Query 039679
Match_columns 230
No_of_seqs 208 out of 387
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2671 Putative RNA methylase 100.0 1.9E-56 4.2E-61 403.7 10.1 217 1-226 1-418 (421)
2 COG1041 Predicted DNA modifica 99.9 2.2E-25 4.9E-30 203.4 12.0 161 1-201 1-346 (347)
3 TIGR01177 conserved hypothetic 99.9 2E-23 4.3E-28 190.1 10.3 94 74-199 236-329 (329)
4 COG4123 Predicted O-methyltran 98.9 9.4E-10 2E-14 97.3 4.6 141 44-204 69-215 (248)
5 PF01170 UPF0020: Putative RNA 98.6 3.9E-08 8.5E-13 82.7 3.0 85 46-163 64-152 (179)
6 PF13659 Methyltransf_26: Meth 98.3 5.1E-07 1.1E-11 69.0 4.2 49 88-162 69-117 (117)
7 PRK13699 putative methylase; P 98.0 5.3E-06 1.2E-10 72.4 4.5 77 88-184 19-95 (227)
8 PRK11524 putative methyltransf 97.8 2.2E-05 4.8E-10 70.4 4.7 57 88-162 26-82 (284)
9 PF01555 N6_N4_Mtase: DNA meth 97.8 1.1E-05 2.4E-10 67.7 2.5 98 90-205 1-114 (231)
10 PF07669 Eco57I: Eco57I restri 97.6 7.3E-05 1.6E-09 57.8 4.2 53 89-163 2-54 (106)
11 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00036 7.9E-09 57.8 5.2 84 88-184 81-164 (179)
12 PF05175 MTS: Methyltransferas 97.3 0.00048 1E-08 57.0 5.1 84 46-164 58-144 (170)
13 TIGR03533 L3_gln_methyl protei 97.2 0.00044 9.6E-09 62.2 4.8 97 50-162 150-253 (284)
14 PF02384 N6_Mtase: N-6 DNA Met 97.2 0.00052 1.1E-08 61.7 5.0 96 53-163 85-186 (311)
15 PRK14967 putative methyltransf 97.2 0.00075 1.6E-08 58.1 5.8 63 88-163 100-162 (223)
16 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.00056 1.2E-08 68.8 5.4 88 46-161 257-348 (702)
17 TIGR03534 RF_mod_PrmC protein- 97.1 0.00034 7.4E-09 60.2 2.7 95 88-196 153-250 (251)
18 PRK09328 N5-glutamine S-adenos 97.1 0.00076 1.6E-08 59.1 4.9 96 88-197 174-272 (275)
19 COG0116 Predicted N6-adenine-s 97.0 0.00077 1.7E-08 63.3 4.6 83 50-161 259-345 (381)
20 TIGR03704 PrmC_rel_meth putati 96.9 0.0011 2.3E-08 58.7 4.0 102 49-163 114-219 (251)
21 PRK14968 putative methyltransf 96.9 0.0022 4.8E-08 52.5 5.6 87 89-188 90-176 (188)
22 PRK11805 N5-glutamine S-adenos 96.9 0.0012 2.6E-08 60.1 4.3 61 89-161 201-264 (307)
23 PHA03412 putative methyltransf 96.8 0.0021 4.6E-08 56.9 5.4 88 45-165 78-165 (241)
24 PRK10901 16S rRNA methyltransf 96.7 0.0011 2.4E-08 62.7 3.3 48 135-182 347-398 (427)
25 PRK14903 16S rRNA methyltransf 96.7 0.00088 1.9E-08 63.7 2.4 83 88-182 306-392 (431)
26 TIGR02987 met_A_Alw26 type II 96.7 0.0019 4.1E-08 62.6 4.5 31 134-164 169-200 (524)
27 PRK14966 unknown domain/N5-glu 96.5 0.0023 5.1E-08 60.9 3.8 127 54-197 284-415 (423)
28 COG2890 HemK Methylase of poly 96.4 0.0095 2E-07 53.7 6.6 139 7-160 84-238 (280)
29 PRK14901 16S rRNA methyltransf 96.3 0.0012 2.6E-08 62.7 0.7 48 135-182 359-410 (434)
30 PRK14902 16S rRNA methyltransf 96.2 0.0013 2.8E-08 62.5 0.3 50 134-183 353-406 (444)
31 TIGR00446 nop2p NOL1/NOP2/sun 96.2 0.004 8.7E-08 55.3 3.3 48 134-181 173-224 (264)
32 TIGR00536 hemK_fam HemK family 96.2 0.0074 1.6E-07 54.0 5.0 95 89-198 182-280 (284)
33 PRK14904 16S rRNA methyltransf 96.2 0.0019 4.1E-08 61.5 1.1 48 135-182 352-403 (445)
34 TIGR00563 rsmB ribosomal RNA s 96.1 0.0062 1.3E-07 57.6 4.5 82 88-181 308-393 (426)
35 PF01861 DUF43: Protein of unk 96.1 0.0063 1.4E-07 54.0 3.9 32 72-105 96-127 (243)
36 PRK15001 SAM-dependent 23S rib 96.0 0.0095 2.1E-07 56.0 5.0 43 89-160 298-340 (378)
37 PRK09489 rsmC 16S ribosomal RN 96.0 0.018 4E-07 53.3 6.7 47 88-163 260-306 (342)
38 PRK15128 23S rRNA m(5)C1962 me 96.0 0.0076 1.7E-07 56.9 4.3 47 88-159 292-338 (396)
39 PRK01544 bifunctional N5-gluta 95.8 0.012 2.7E-07 57.1 4.7 90 89-191 206-298 (506)
40 COG0144 Sun tRNA and rRNA cyto 95.3 0.009 1.9E-07 55.6 1.9 83 89-183 229-315 (355)
41 COG2813 RsmC 16S RNA G1207 met 95.0 0.042 9.2E-07 50.2 5.1 44 87-159 222-265 (300)
42 PHA03411 putative methyltransf 94.9 0.033 7.1E-07 50.5 4.3 93 45-160 90-183 (279)
43 PRK11783 rlmL 23S rRNA m(2)G24 94.8 0.038 8.3E-07 55.7 5.0 49 88-159 607-655 (702)
44 COG1743 Adenine-specific DNA m 94.2 0.073 1.6E-06 54.1 5.1 50 134-183 562-614 (875)
45 PRK11727 23S rRNA mA1618 methy 94.1 0.022 4.9E-07 52.4 1.3 34 145-181 232-265 (321)
46 COG0286 HsdM Type I restrictio 93.6 0.19 4E-06 48.8 6.7 101 54-164 223-330 (489)
47 PF10237 N6-adenineMlase: Prob 93.5 0.12 2.5E-06 43.2 4.5 23 83-105 80-102 (162)
48 PRK00107 gidB 16S rRNA methylt 93.2 0.12 2.6E-06 43.9 4.1 62 139-201 124-186 (187)
49 COG2226 UbiE Methylase involve 92.6 0.11 2.5E-06 45.9 3.3 51 72-159 105-155 (238)
50 COG2521 Predicted archaeal met 92.6 0.11 2.4E-06 46.3 3.2 40 88-158 204-243 (287)
51 PF10672 Methyltrans_SAM: S-ad 92.2 0.16 3.4E-06 46.2 3.8 44 88-159 194-237 (286)
52 PRK11188 rrmJ 23S rRNA methylt 92.0 0.21 4.5E-06 42.8 4.1 25 138-162 143-167 (209)
53 PRK11933 yebU rRNA (cytosine-C 91.3 0.14 3.1E-06 49.5 2.6 64 88-163 182-245 (470)
54 TIGR00438 rrmJ cell division p 90.4 0.5 1.1E-05 39.3 4.8 26 137-162 123-148 (188)
55 PRK08287 cobalt-precorrin-6Y C 90.1 0.56 1.2E-05 38.9 4.9 45 140-184 111-155 (187)
56 COG1092 Predicted SAM-dependen 90.1 0.46 9.9E-06 45.1 4.8 47 88-159 289-335 (393)
57 TIGR00497 hsdM type I restrict 89.9 0.61 1.3E-05 45.2 5.6 66 89-164 293-359 (501)
58 PRK00811 spermidine synthase; 89.8 0.43 9.4E-06 42.8 4.2 22 140-161 171-192 (283)
59 PLN02672 methionine S-methyltr 89.6 0.62 1.3E-05 49.5 5.7 93 89-183 203-301 (1082)
60 COG0863 DNA modification methy 88.0 0.61 1.3E-05 41.1 3.9 87 89-184 35-122 (302)
61 PF03602 Cons_hypoth95: Conser 87.9 0.98 2.1E-05 38.1 4.8 58 88-183 113-171 (183)
62 TIGR00417 speE spermidine synt 87.6 0.73 1.6E-05 40.9 4.1 22 140-161 166-187 (270)
63 PF01209 Ubie_methyltran: ubiE 87.3 0.47 1E-05 41.5 2.7 74 46-159 75-152 (233)
64 PLN02232 ubiquinone biosynthes 86.9 0.7 1.5E-05 37.7 3.3 50 73-159 31-80 (160)
65 PF05063 MT-A70: MT-A70 ; Int 86.9 0.61 1.3E-05 38.8 3.0 76 90-184 1-76 (176)
66 KOG2904 Predicted methyltransf 86.7 1.1 2.5E-05 40.9 4.7 63 87-160 220-285 (328)
67 cd02440 AdoMet_MTases S-adenos 86.7 0.9 2E-05 31.6 3.4 39 88-159 65-103 (107)
68 TIGR00138 gidB 16S rRNA methyl 86.6 0.73 1.6E-05 38.6 3.4 57 140-199 122-180 (181)
69 PRK01581 speE spermidine synth 86.3 0.88 1.9E-05 42.9 4.0 20 140-159 248-267 (374)
70 PF01189 Nol1_Nop2_Fmu: NOL1/N 86.3 0.36 7.8E-06 43.5 1.4 52 133-184 188-247 (283)
71 PRK03612 spermidine synthase; 85.5 0.98 2.1E-05 44.1 4.1 21 140-160 395-415 (521)
72 COG1568 Predicted methyltransf 85.1 0.28 6.1E-06 44.8 0.2 30 72-102 205-234 (354)
73 KOG3420 Predicted RNA methylas 84.5 1.2 2.6E-05 37.3 3.5 60 43-105 69-130 (185)
74 TIGR02469 CbiT precorrin-6Y C5 84.1 1.6 3.6E-05 32.6 4.0 20 140-159 102-121 (124)
75 PLN02233 ubiquinone biosynthes 81.6 2 4.3E-05 38.0 4.1 21 140-160 162-182 (261)
76 PRK10909 rsmD 16S rRNA m(2)G96 81.4 0.79 1.7E-05 39.3 1.4 52 47-100 78-132 (199)
77 PF08241 Methyltransf_11: Meth 80.7 1.1 2.4E-05 31.7 1.8 21 138-158 75-95 (95)
78 TIGR00095 RNA methyltransferas 79.6 2.9 6.3E-05 35.3 4.3 13 89-101 121-133 (189)
79 KOG2198 tRNA cytosine-5-methyl 79.2 2.2 4.9E-05 40.1 3.7 60 88-159 235-295 (375)
80 PLN02490 MPBQ/MSBQ methyltrans 79.2 2.6 5.6E-05 39.2 4.1 63 141-205 196-284 (340)
81 TIGR01712 phage_N6A_met phage 78.9 3.7 8E-05 34.6 4.6 10 92-101 64-73 (166)
82 TIGR02752 MenG_heptapren 2-hep 77.7 3.2 6.9E-05 35.2 4.0 22 140-161 131-152 (231)
83 KOG3350 Uncharacterized conser 75.8 1.2 2.7E-05 38.2 0.9 35 73-107 118-153 (217)
84 PRK10258 biotin biosynthesis p 75.6 3.2 6.9E-05 35.9 3.5 24 140-163 120-143 (251)
85 COG1553 DsrE Uncharacterized c 73.4 2.4 5.2E-05 34.1 2.0 16 142-157 20-35 (126)
86 TIGR00006 S-adenosyl-methyltra 72.9 3.5 7.7E-05 37.8 3.2 25 137-161 217-241 (305)
87 PRK00121 trmB tRNA (guanine-N( 72.0 7.1 0.00015 33.0 4.7 25 139-163 135-159 (202)
88 COG0275 Predicted S-adenosylme 70.3 4.5 9.7E-05 37.3 3.2 27 137-163 221-247 (314)
89 COG0742 N6-adenine-specific me 70.0 8.3 0.00018 33.0 4.6 54 44-100 67-125 (187)
90 PRK00050 16S rRNA m(4)C1402 me 69.6 4.6 0.0001 36.9 3.2 24 137-160 213-236 (296)
91 PRK11873 arsM arsenite S-adeno 68.6 8.2 0.00018 33.8 4.5 20 140-159 163-182 (272)
92 PRK11088 rrmA 23S rRNA methylt 68.1 5.3 0.00011 35.2 3.2 21 143-163 164-184 (272)
93 PLN02366 spermidine synthase 68.0 6.7 0.00015 35.9 3.9 19 140-158 186-204 (308)
94 PF09445 Methyltransf_15: RNA 67.4 3.5 7.5E-05 34.5 1.7 57 90-167 70-126 (163)
95 PF01795 Methyltransf_5: MraW 66.3 4.4 9.6E-05 37.3 2.3 25 137-161 218-242 (310)
96 smart00138 MeTrc Methyltransfe 65.3 10 0.00022 33.7 4.4 21 139-159 221-241 (264)
97 COG2263 Predicted RNA methylas 65.3 4.8 0.0001 34.8 2.2 53 44-102 67-121 (198)
98 PLN02244 tocopherol O-methyltr 64.2 14 0.00031 33.9 5.3 22 140-161 203-224 (340)
99 PRK04457 spermidine synthase; 64.1 10 0.00022 33.6 4.2 21 140-160 157-177 (262)
100 KOG2356 Transcriptional activa 63.7 6.4 0.00014 36.4 2.8 50 88-160 183-233 (366)
101 PRK13944 protein-L-isoaspartat 63.7 10 0.00022 32.1 4.0 14 146-159 159-172 (205)
102 PRK00517 prmA ribosomal protei 63.4 9.4 0.0002 33.3 3.8 57 137-196 190-246 (250)
103 COG2519 GCD14 tRNA(1-methylade 63.0 5.7 0.00012 35.7 2.3 25 140-164 175-199 (256)
104 TIGR02072 BioC biotin biosynth 62.3 9.1 0.0002 31.9 3.4 24 140-163 115-138 (240)
105 TIGR00091 tRNA (guanine-N(7)-) 61.4 2.9 6.2E-05 35.1 0.2 43 140-182 112-155 (194)
106 PF10354 DUF2431: Domain of un 60.0 12 0.00026 31.1 3.7 49 135-184 100-151 (166)
107 TIGR00080 pimt protein-L-isoas 59.4 11 0.00024 31.9 3.4 14 146-159 163-176 (215)
108 PF12847 Methyltransf_18: Meth 59.1 9 0.0002 28.2 2.6 23 137-159 88-110 (112)
109 PRK04266 fibrillarin; Provisio 59.0 9.8 0.00021 33.1 3.1 24 140-163 156-179 (226)
110 PRK06922 hypothetical protein; 58.7 10 0.00022 38.6 3.5 23 138-160 515-537 (677)
111 PF08242 Methyltransf_12: Meth 58.3 8 0.00017 28.1 2.1 20 137-156 80-99 (99)
112 PF13489 Methyltransf_23: Meth 56.9 10 0.00022 29.5 2.6 25 139-163 94-118 (161)
113 PLN02336 phosphoethanolamine N 56.5 11 0.00023 36.0 3.1 21 139-159 121-141 (475)
114 PF01564 Spermine_synth: Sperm 56.4 15 0.00033 32.3 3.9 24 140-163 171-194 (246)
115 smart00650 rADc Ribosomal RNA 55.8 5.8 0.00013 32.3 1.1 28 72-102 63-90 (169)
116 PLN02336 phosphoethanolamine N 55.5 22 0.00047 33.9 5.1 24 140-163 349-372 (475)
117 PRK07402 precorrin-6B methylas 55.1 13 0.00028 30.9 3.2 25 139-163 121-145 (196)
118 COG2242 CobL Precorrin-6B meth 54.7 11 0.00023 32.4 2.6 25 139-163 114-138 (187)
119 PLN02781 Probable caffeoyl-CoA 54.4 15 0.00033 31.9 3.6 20 139-158 157-176 (234)
120 COG3254 Uncharacterized conser 54.3 40 0.00088 26.3 5.4 50 15-68 25-76 (105)
121 PF08704 GCD14: tRNA methyltra 53.0 6.6 0.00014 34.9 1.1 23 142-164 127-150 (247)
122 PF05869 Dam: DNA N-6-adenine- 53.0 19 0.00041 30.5 3.8 25 139-163 108-132 (181)
123 PLN02823 spermine synthase 52.1 21 0.00045 33.1 4.2 20 141-160 200-220 (336)
124 PRK00377 cbiT cobalt-precorrin 50.3 18 0.00038 30.3 3.2 25 139-163 124-148 (198)
125 PRK13168 rumA 23S rRNA m(5)U19 48.5 9.7 0.00021 36.2 1.5 12 89-100 367-378 (443)
126 PRK00312 pcm protein-L-isoaspa 48.0 24 0.00052 29.6 3.7 17 145-161 160-176 (212)
127 KOG1122 tRNA and rRNA cytosine 47.6 7.8 0.00017 37.3 0.7 50 135-184 346-399 (460)
128 PRK00536 speE spermidine synth 47.3 25 0.00053 31.6 3.8 12 88-99 138-149 (262)
129 TIGR00308 TRM1 tRNA(guanine-26 46.6 25 0.00053 33.1 3.8 19 141-159 128-146 (374)
130 PRK14103 trans-aconitate 2-met 46.1 18 0.00038 31.4 2.7 23 140-162 106-128 (255)
131 PRK03522 rumB 23S rRNA methylu 45.4 12 0.00027 33.8 1.6 14 89-105 240-253 (315)
132 PTZ00098 phosphoethanolamine N 44.6 24 0.00051 31.1 3.2 24 140-163 136-159 (263)
133 PRK12335 tellurite resistance 43.1 46 0.001 29.6 4.9 27 138-164 201-227 (287)
134 PRK04338 N(2),N(2)-dimethylgua 42.8 32 0.00069 32.4 4.0 50 46-101 84-136 (382)
135 PF08734 GYD: GYD domain; Int 42.0 49 0.0011 24.7 4.2 45 13-61 19-64 (91)
136 PRK11036 putative S-adenosyl-L 41.8 25 0.00055 30.5 3.0 23 140-162 129-151 (255)
137 PF11599 AviRa: RRNA methyltra 41.5 56 0.0012 29.1 4.9 50 89-166 168-217 (246)
138 TIGR00477 tehB tellurite resis 40.9 29 0.00063 29.0 3.1 22 138-159 111-132 (195)
139 TIGR02085 meth_trns_rumB 23S r 40.8 14 0.00031 34.4 1.4 11 89-99 300-310 (374)
140 PF06080 DUF938: Protein of un 40.0 35 0.00076 29.6 3.5 30 136-165 117-146 (204)
141 PF02353 CMAS: Mycolic acid cy 40.0 22 0.00049 31.8 2.4 19 139-157 145-163 (273)
142 KOG1540 Ubiquinone biosynthesi 39.7 27 0.00059 31.8 2.8 20 140-159 194-213 (296)
143 TIGR01934 MenG_MenH_UbiE ubiqu 39.1 30 0.00064 28.5 2.9 22 140-161 123-144 (223)
144 PLN02476 O-methyltransferase 38.6 37 0.0008 30.8 3.5 20 139-158 207-226 (278)
145 TIGR02716 C20_methyl_CrtF C-20 37.7 36 0.00078 30.4 3.4 24 137-160 231-254 (306)
146 smart00828 PKS_MT Methyltransf 37.5 30 0.00065 29.0 2.7 23 140-162 84-106 (224)
147 PRK08317 hypothetical protein; 36.2 33 0.00072 28.4 2.7 23 140-162 104-126 (241)
148 PRK11207 tellurite resistance 35.9 57 0.0012 27.2 4.2 23 138-160 112-134 (197)
149 TIGR00452 methyltransferase, p 35.7 49 0.0011 30.3 4.0 24 140-163 205-228 (314)
150 PF01234 NNMT_PNMT_TEMT: NNMT/ 35.4 31 0.00068 30.9 2.5 25 137-161 176-200 (256)
151 PRK01683 trans-aconitate 2-met 35.0 37 0.0008 29.2 2.9 24 140-163 110-133 (258)
152 PF04378 RsmJ: Ribosomal RNA s 34.4 74 0.0016 28.3 4.7 28 135-164 141-168 (245)
153 PF01728 FtsJ: FtsJ-like methy 33.7 49 0.0011 26.9 3.3 28 133-160 112-139 (181)
154 KOG4300 Predicted methyltransf 33.1 33 0.00071 30.5 2.2 87 43-167 96-188 (252)
155 KOG3157 Proline synthetase co- 32.0 41 0.0009 29.6 2.6 36 192-229 31-66 (244)
156 PRK15451 tRNA cmo(5)U34 methyl 31.5 43 0.00093 29.0 2.8 22 139-160 143-164 (247)
157 COG0338 Dam Site-specific DNA 31.2 25 0.00054 31.8 1.2 11 91-101 176-186 (274)
158 PF06962 rRNA_methylase: Putat 30.4 31 0.00067 28.2 1.5 25 140-164 72-97 (140)
159 PRK05031 tRNA (uracil-5-)-meth 29.4 28 0.00062 32.3 1.3 14 89-105 288-301 (362)
160 TIGR00406 prmA ribosomal prote 29.3 54 0.0012 29.3 3.0 27 136-162 235-261 (288)
161 PRK15068 tRNA mo(5)U34 methylt 28.4 82 0.0018 28.8 4.1 21 140-160 206-226 (322)
162 smart00362 RRM_2 RNA recogniti 27.9 1.6E+02 0.0035 18.5 5.9 55 6-62 3-57 (72)
163 COG2894 MinD Septum formation 27.6 24 0.00052 31.6 0.5 19 88-106 112-130 (272)
164 PF14026 DUF4242: Protein of u 27.1 69 0.0015 23.2 2.7 25 42-66 45-69 (77)
165 COG0357 GidB Predicted S-adeno 26.9 37 0.00081 29.6 1.5 66 138-203 146-214 (215)
166 PRK05134 bifunctional 3-demeth 26.7 66 0.0014 27.1 3.0 22 140-161 131-152 (233)
167 PF05401 NodS: Nodulation prot 26.0 52 0.0011 28.5 2.3 23 137-159 123-145 (201)
168 PRK11705 cyclopropane fatty ac 25.6 77 0.0017 29.8 3.5 25 139-163 246-270 (383)
169 TIGR02143 trmA_only tRNA (urac 25.5 39 0.00085 31.3 1.5 14 89-105 279-292 (353)
170 COG0220 Predicted S-adenosylme 25.5 43 0.00093 29.4 1.7 26 140-167 144-169 (227)
171 PRK14121 tRNA (guanine-N(7)-)- 25.2 62 0.0013 30.8 2.8 27 139-167 214-240 (390)
172 PF03269 DUF268: Caenorhabditi 25.1 67 0.0015 27.3 2.6 41 144-184 95-144 (177)
173 PF00076 RRM_1: RNA recognitio 25.1 1.3E+02 0.0028 19.6 3.7 52 11-63 7-58 (70)
174 PF02086 MethyltransfD12: D12 24.9 33 0.00072 29.4 0.9 16 90-105 178-193 (260)
175 TIGR00740 methyltransferase, p 24.9 75 0.0016 27.1 3.1 24 139-162 140-163 (239)
176 PRK10148 hypothetical protein; 24.9 62 0.0013 26.1 2.4 53 44-105 86-138 (147)
177 PF06859 Bin3: Bicoid-interact 24.8 61 0.0013 25.5 2.2 22 137-158 21-42 (110)
178 KOG1270 Methyltransferases [Co 24.7 53 0.0011 29.9 2.1 20 139-158 174-193 (282)
179 PF03291 Pox_MCEL: mRNA cappin 24.5 72 0.0016 29.5 3.0 30 134-163 160-189 (331)
180 PRK00216 ubiE ubiquinone/menaq 24.4 72 0.0016 26.5 2.8 22 140-161 138-159 (239)
181 PRK13943 protein-L-isoaspartat 23.9 1.1E+02 0.0023 28.2 4.0 17 146-162 166-182 (322)
182 TIGR00571 dam DNA adenine meth 23.4 43 0.00093 29.6 1.3 11 91-101 174-184 (266)
183 PF14259 RRM_6: RNA recognitio 23.1 86 0.0019 20.9 2.6 50 13-63 9-58 (70)
184 PF12949 HeH: HeH/LEM domain; 23.1 58 0.0013 20.3 1.5 19 13-31 3-21 (35)
185 PRK10904 DNA adenine methylase 23.0 44 0.00096 29.7 1.3 12 91-102 176-187 (271)
186 PF05148 Methyltransf_8: Hypot 22.6 60 0.0013 28.5 2.0 62 139-204 137-200 (219)
187 PLN02396 hexaprenyldihydroxybe 22.4 79 0.0017 29.1 2.9 22 140-161 215-236 (322)
188 PRK14896 ksgA 16S ribosomal RN 22.1 46 0.001 29.2 1.2 25 73-102 80-104 (258)
189 PF02527 GidB: rRNA small subu 22.0 72 0.0016 26.9 2.3 22 139-160 127-148 (184)
190 PF02390 Methyltransf_4: Putat 21.9 60 0.0013 27.5 1.8 41 140-182 113-157 (195)
191 PTZ00338 dimethyladenosine tra 21.8 48 0.001 30.0 1.3 29 72-105 89-117 (294)
192 PF00107 ADH_zinc_N: Zinc-bind 21.5 65 0.0014 24.2 1.8 20 140-159 69-88 (130)
193 PF10298 WhiA_N: WhiA N-termin 21.3 1.1E+02 0.0025 22.1 3.0 39 15-62 4-42 (86)
194 cd00590 RRM RRM (RNA recogniti 20.7 2.3E+02 0.005 17.8 5.8 56 7-63 4-59 (74)
195 TIGR02625 YiiL_rotase L-rhamno 20.6 1.3E+02 0.0028 23.1 3.2 55 9-68 18-73 (102)
No 1
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-56 Score=403.69 Aligned_cols=217 Identities=39% Similarity=0.597 Sum_probs=188.5
Q ss_pred CceeeehhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHHHHHHHH-HH---------
Q 039679 1 MWYLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANRIWITN-AY--------- 70 (230)
Q Consensus 1 m~Yl~~fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~Rsil~~-I~--------- 70 (230)
|+||++|||+|.+||+||+||||+|||+.++.+ ++++-.+|||+|+++|+++|+.+++|||++| ||
T Consensus 1 ~~yLl~~~q~hl~Fr~pE~eala~lF~~~i~~s----q~~~t~~PF~iv~~~s~~~Ar~~~kRSIl~kgiyEl~~~g~s~ 76 (421)
T KOG2671|consen 1 LPYLLIFAQSHLDFRLPELEALASLFGLQIDES----QKLHTTSPFFIVEFESEEIARNLIKRSILVKGIYELWGEGTSY 76 (421)
T ss_pred CcEEEEEehhhhccchHHHHHHHHHHhhhhhhh----hhhcCCCceEEEEeCchHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 689999999999999999999999999977653 3367789999999999999999999999999 97
Q ss_pred --------------------------------------------------------------------------------
Q 039679 71 -------------------------------------------------------------------------------- 70 (230)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (230)
T Consensus 77 ~elh~~i~n~p~~~~~~f~~~dssfki~fetfgk~~t~~e~~~~I~~f~ylpfeG~Vnlk~Pq~~f~viE~y~~~pn~~p 156 (421)
T KOG2671|consen 77 DELHESIQNYPEAQILPFFKSDSSFKIRFETFGKKLTQDEQVEIIESFDYLPFEGPVNLKNPQHVFFVIEEYELDPNVGP 156 (421)
T ss_pred HHHHHHHHhCCcccccchhccCceeEEEEEEecccccHHHHHHHhhhheeccccceeccCCCceEEEEEEeeccCCCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 039679 71 -------------------------------------------------------------------------------- 70 (230)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (230)
T Consensus 157 ~~p~~IyFGr~ig~g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGt 236 (421)
T KOG2671|consen 157 EEPKKIYFGRLIGEGQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGT 236 (421)
T ss_pred CCcceeeehhhhccchHhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeecc
Confidence
Q ss_pred -----------------H--------------HHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCC
Q 039679 71 -----------------W--------------FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVP 119 (230)
Q Consensus 71 -----------------~--------------ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~ 119 (230)
| ++++|++++|||+++ .|||||||||||||||+||.+++.... +..
T Consensus 237 DIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~--~fDaIvcDPPYGVRe~~rk~~~k~~~r-~~~ 313 (421)
T KOG2671|consen 237 DIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL--KFDAIVCDPPYGVREGARKTGKKKSVR-TTE 313 (421)
T ss_pred ccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc--eeeEEEeCCCcchhhhhhhhcccCccc-Ccc
Confidence 0 799999999999987 999999999999999999987653322 334
Q ss_pred CCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 120 DDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 120 ~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
++.+.+|+|++.+|++.+|+.|||.++++.|+.|||||||+|+..+++.+.++|.||++.|+.+|+|.++ +|+|+|+||
T Consensus 314 ~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~~e~~~~~~~P~h~~lsl~~ns~q~~~-~~srrllt~ 392 (421)
T KOG2671|consen 314 ESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTITEEYGEDDIPSHPYLSLIYNSEQPFT-HWSRRLLTY 392 (421)
T ss_pred cccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCchhhccCcccCCCCcchhhhhhhccccc-hhhhhheee
Confidence 4788999999999999999999999999999999999999999999998999999999999999999999 999999999
Q ss_pred EEcCCCcHHHHHHHHhhhhHhHHhhhh
Q 039679 200 VKIGLYTEEIAETARRNHLEFRENHLK 226 (230)
Q Consensus 200 ~K~~~~~~~~~~~~~~~~~~fr~~~~~ 226 (230)
+|..++........-+..++ |++||+
T Consensus 393 ~k~~~~~~~~S~~~v~~~~~-r~~~~~ 418 (421)
T KOG2671|consen 393 QKLPRYSDSKSLNLVPKINN-RTRYFN 418 (421)
T ss_pred eeccccCcccccccCCchhh-cchhhh
Confidence 99998743222111112223 777765
No 2
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.2e-25 Score=203.44 Aligned_cols=161 Identities=25% Similarity=0.302 Sum_probs=138.6
Q ss_pred CceeeehhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHHHHHHHH-HH---------
Q 039679 1 MWYLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANRIWITN-AY--------- 70 (230)
Q Consensus 1 m~Yl~~fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~Rsil~~-I~--------- 70 (230)
|.|+++++|+|++|+++||+|||++++..+.+. ...+||.++++.+.+++....+|+.+++ |+
T Consensus 1 ~~~~~~l~g~h~el~~~El~al~~~~~l~~~~~-------~~~d~~~~~~v~~~~d~~~~~~~~~~~~~i~~~~g~g~~~ 73 (347)
T COG1041 1 MEYYLELLGEHPELSLAELKALADIENLGFRVS-------EERDPFSYVEVASIEDAYKWFRRSGLTKKIGEIIGEGDKV 73 (347)
T ss_pred CceeeeeccCCccCCHHHHHHHHHHhccceeEE-------eccCceeEEEEccchHHHHHHHHhhhccceEEEEecCchh
Confidence 889999999999999999999999999977663 2245999999999999999999999999 73
Q ss_pred --------------------------------------------------------------------------------
Q 039679 71 -------------------------------------------------------------------------------- 70 (230)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (230)
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~le~~~~~~~~~~~~~v~~~~p~~v~r~~~~~~~~~~ 153 (347)
T COG1041 74 RDHADINEFTVLVLGEAVDWSEYKFEEEKGRVRIRRKEQDVDKGLEKAIGGAIPSEGLRVSLSKPDEVVRVVVTEDKVYL 153 (347)
T ss_pred hhhhhhhhhhhhhhhhhcChhhhhhhccccceEEEEEecccccchhHHhhccchhcCceeecCCcceEEEeeeeCCEEEE
Confidence
Q ss_pred ---------------------------------------------------------------------------H----
Q 039679 71 ---------------------------------------------------------------------------W---- 71 (230)
Q Consensus 71 ---------------------------------------------------------------------------~---- 71 (230)
|
T Consensus 154 G~~~~~~dr~~~~~r~~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~ 233 (347)
T COG1041 154 GLTVRERDRKAFEKRDPEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVR 233 (347)
T ss_pred EEEEEecChHHHhhcCcccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHh
Confidence 0
Q ss_pred ---------------HHhh-cCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcch
Q 039679 72 ---------------FAKA-DNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCL 135 (230)
Q Consensus 72 ---------------ll~~-D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~ 135 (230)
++.. |+++.|++.+ .||||+||||||++++.++. .+
T Consensus 234 gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~---~vdaIatDPPYGrst~~~~~-------------------------~l 285 (347)
T COG1041 234 GAKINLEYYGIEDYPVLKVLDATNLPLRDN---SVDAIATDPPYGRSTKIKGE-------------------------GL 285 (347)
T ss_pred hhhhhhhhhCcCceeEEEecccccCCCCCC---ccceEEecCCCCcccccccc-------------------------cH
Confidence 2333 9999999886 79999999999999988542 38
Q ss_pred HHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEEEE
Q 039679 136 SECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVK 201 (230)
Q Consensus 136 ~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K 201 (230)
++|+.+.|+.|.++|++||++|||.|.. ...-....||+++..+.|..|++++|.+.++++
T Consensus 286 ~~Ly~~~le~~~evLk~gG~~vf~~p~~-----~~~~~~~~~f~v~~~~~~~~H~sLtR~i~v~~~ 346 (347)
T COG1041 286 DELYEEALESASEVLKPGGRIVFAAPRD-----PRHELEELGFKVLGRFTMRVHGSLTRVIYVVRK 346 (347)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEecCCc-----chhhHhhcCceEEEEEEEeecCceEEEEEEEec
Confidence 9999999999999999999999999922 222234569999999999999999999999876
No 3
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.89 E-value=2e-23 Score=190.06 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=75.1
Q ss_pred hhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccC
Q 039679 74 KADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMG 153 (230)
Q Consensus 74 ~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~g 153 (230)
.+|.++.|++. +.||+||||||||+|.+.+. ....+++.++|+.+.++|++|
T Consensus 236 ~~D~~~l~~~~---~~~D~Iv~dPPyg~~~~~~~-------------------------~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 236 RGDATKLPLSS---ESVDAIATDPPYGRSTTAAG-------------------------DGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred ecchhcCCccc---CCCCEEEECCCCcCcccccC-------------------------CchHHHHHHHHHHHHHHccCC
Confidence 45666556554 38999999999999876531 135678899999999999999
Q ss_pred CEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 154 GRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 154 GRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
|++++++|+..+ ...+....|| ++..+.|.+|++++|+++++
T Consensus 288 G~lv~~~~~~~~---~~~~~~~~g~-i~~~~~~~~h~sl~r~i~v~ 329 (329)
T TIGR01177 288 GWIVYAVPTRID---LESLAEDAFR-VVKRFEVRVHRSLTRHIYVA 329 (329)
T ss_pred cEEEEEEcCCCC---HHHHHhhcCc-chheeeeeeecceEEEEEeC
Confidence 999999997532 2245567799 99999999999999999874
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.92 E-value=9.4e-10 Score=97.35 Aligned_cols=141 Identities=23% Similarity=0.203 Sum_probs=100.8
Q ss_pred CCEEEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCC
Q 039679 44 SPFHFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVP 119 (230)
Q Consensus 44 ~pf~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~ 119 (230)
.++.-||+ ++.+-..|+|++-.- .- .+++.|+++-.-... ...||.|||+|||=-....+.. ++
T Consensus 69 a~I~~VEi--q~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NPPyf~~~~~~~~-----~~---- 136 (248)
T COG4123 69 AKIVGVEI--QEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-FASFDLIICNPPYFKQGSRLNE-----NP---- 136 (248)
T ss_pred CcEEEEEe--CHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-ccccCEEEeCCCCCCCccccCc-----Ch----
Confidence 56667776 555777888887553 22 157778776432221 1279999999999764333110 00
Q ss_pred CCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeE-EEecCCc-eeEEEE
Q 039679 120 DDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASS-EQILSSR-YSRVLL 197 (230)
Q Consensus 120 ~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~-~Q~~~~k-~sR~Li 197 (230)
....+.|...-.+.+++..|+++|++||+++|++|..+..+ ...+....+|.+...| +++..++ ..|.|+
T Consensus 137 -------~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~e-i~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv 208 (248)
T COG4123 137 -------LRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAE-IIELLKSYNLEPKRIQFVYPKIGKAANRVLV 208 (248)
T ss_pred -------hhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHH-HHHHHHhcCCCceEEEEecCCCCCcceEEEE
Confidence 11134667777799999999999999999999999887655 3455666789999999 9999888 899999
Q ss_pred EEEEcCC
Q 039679 198 TMVKIGL 204 (230)
Q Consensus 198 t~~K~~~ 204 (230)
+..|...
T Consensus 209 ~~~k~~~ 215 (248)
T COG4123 209 EAIKGGK 215 (248)
T ss_pred EEecCCC
Confidence 9998765
No 5
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.55 E-value=3.9e-08 Score=82.71 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=55.7
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
++-++. +..+...++..+-.- +- .....|.+..+.+.+ .+|+||||||||+|.+.++
T Consensus 64 ~~g~Di--~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~---~~d~IvtnPPyG~r~~~~~-------------- 124 (179)
T PF01170_consen 64 IIGSDI--DPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG---SVDAIVTNPPYGRRLGSKK-------------- 124 (179)
T ss_dssp EEEEES--SHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS---BSCEEEEE--STTSHCHHH--------------
T ss_pred EEecCC--CHHHHHHHHHHHHhcccCCceEEEecchhhcccccC---CCCEEEECcchhhhccCHH--------------
Confidence 455554 444555555543221 11 134557776664443 8999999999999999743
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+..+++.++++.++++|++ +.+++++..
T Consensus 125 ------------~~~~ly~~~~~~~~~~l~~--~~v~l~~~~ 152 (179)
T PF01170_consen 125 ------------DLEKLYRQFLRELKRVLKP--RAVFLTTSN 152 (179)
T ss_dssp ------------HHHHHHHHHHHHHHCHSTT--CEEEEEESC
T ss_pred ------------HHHHHHHHHHHHHHHHCCC--CEEEEEECC
Confidence 3578999999999999996 889998854
No 6
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.34 E-value=5.1e-07 Score=69.00 Aligned_cols=49 Identities=37% Similarity=0.690 Sum_probs=35.0
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.|||||||+.+.+.+... .+.+..+++.+.++|++||++++++|.
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAAL--------------------------RRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp T-EEEEEE--STTSBTT----G--------------------------GCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ceeEEEEECCCCccccccchhh--------------------------HHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 3899999999999775543211 116778999999999999999999883
No 7
>PRK13699 putative methylase; Provisional
Probab=98.03 E-value=5.3e-06 Score=72.44 Aligned_cols=77 Identities=26% Similarity=0.221 Sum_probs=46.4
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.+|+|||||||++ +.+.. .+... ......+.+...+..+.++|++||.++.+........
T Consensus 19 ~SVDLIiTDPPY~i--~~~~~-~~~~~----------------~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~ 79 (227)
T PRK13699 19 NAVDFILTDPPYLV--GFRDR-QGRTI----------------AGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDR 79 (227)
T ss_pred cccceEEeCCCccc--ccccC-CCccc----------------ccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHH
Confidence 48999999999997 22110 00000 0112446678889999999999999987644321111
Q ss_pred CCCCccccCCceeEeeE
Q 039679 168 TRNPFPEHLCFKLVASS 184 (230)
Q Consensus 168 ~~~~lp~h~gl~li~~~ 184 (230)
........||.+...+
T Consensus 80 -~~~al~~~GF~l~~~I 95 (227)
T PRK13699 80 -FMAAWKNAGFSVVGHL 95 (227)
T ss_pred -HHHHHHHCCCEEeeEE
Confidence 1122345588876655
No 8
>PRK11524 putative methyltransferase; Provisional
Probab=97.82 E-value=2.2e-05 Score=70.40 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=37.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||+||||||||+..+. ... .. . ...-...+.+.+++..+.++|++||.++++...
T Consensus 26 ~siDlIitDPPY~~~~~~--~~~--~~----------~----~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 26 ESVDLIFADPPYNIGKNF--DGL--IE----------A----WKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CcccEEEECCCccccccc--ccc--cc----------c----ccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 489999999999972111 000 00 0 000124456789999999999999999887554
No 9
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.81 E-value=1.1e-05 Score=67.69 Aligned_cols=98 Identities=20% Similarity=0.117 Sum_probs=55.3
Q ss_pred cceeEeCCCCcccccc---cccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCC
Q 039679 90 FDAIICDPPYGVRASG---RKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLRED 166 (230)
Q Consensus 90 ~DaIvtDPPYGiRa~~---rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~ 166 (230)
+|+||||||||+-... ...+. . ...-+..+.+..++..+.++|++||.++++..-....
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~--~----------------~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~ 62 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGD--N----------------KNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIA 62 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCH--C----------------CHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEEC
T ss_pred CCEEEECCCCCCCCCcchhhhccC--C----------------CCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhh
Confidence 6999999999996552 10000 0 0122457778899999999999999998887654322
Q ss_pred C-CCCCccccCC-ceeEeeEEEecCC--------c---eeEEEEEEEEcCCC
Q 039679 167 S-TRNPFPEHLC-FKLVASSEQILSS--------R---YSRVLLTMVKIGLY 205 (230)
Q Consensus 167 ~-~~~~lp~h~g-l~li~~~~Q~~~~--------k---~sR~Lit~~K~~~~ 205 (230)
. ....+-...| |.++...+-...+ + .+=.++.+.|....
T Consensus 63 ~~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~il~~~K~~~~ 114 (231)
T PF01555_consen 63 GFLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKRFSNSHEYILVFSKDKKK 114 (231)
T ss_dssp THHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS-B--EEEEEEEESSTT-
T ss_pred HHHHHHHHHHhhhhheeccceeEecCccccccccccccchhhhhcccccccc
Confidence 1 1122333446 8888766333220 1 45567888886655
No 10
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.61 E-value=7.3e-05 Score=57.76 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=39.2
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.||+||.+|||+......+.... ...-.+++.-+++.|.++| +|.++|+.|..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~--------------------~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~ 54 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK--------------------KKKKSDLYILFIEKSLNLL--NGYLSFITPNS 54 (106)
T ss_pred CcCEEEECCCChhhccccchhhc--------------------ccccCcHHHHHHHHHHHHh--CCeEEEEeChH
Confidence 48999999999987654321100 0014567888999999999 99999999964
No 11
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.32 E-value=0.00036 Score=57.81 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=51.2
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|+++|||.--.+..+... ..+..... ...-.+++.+++..+.++|++||++++..+...+..
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~ 147 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGD------------WLDVAIDG-GKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEP 147 (179)
T ss_pred CcccEEEECCCCCCCcchhcccc------------hhhhhhhc-CCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChH
Confidence 37999999999975433221100 00000000 112246689999999999999999999988776433
Q ss_pred CCCCccccCCceeEeeE
Q 039679 168 TRNPFPEHLCFKLVASS 184 (230)
Q Consensus 168 ~~~~lp~h~gl~li~~~ 184 (230)
.....-...||.+....
T Consensus 148 ~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVA 164 (179)
T ss_pred HHHHHHHhCCCeEEEEE
Confidence 22333345577666543
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.25 E-value=0.00048 Score=56.99 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=52.9
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH--HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY--WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDK 122 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~--~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~ 122 (230)
...||+ +..|..++++.+-.. +- .++.+|..... . .+.||.|||+||+.. +
T Consensus 58 v~~vDi--~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~---~~~fD~Iv~NPP~~~--~------------------ 111 (170)
T PF05175_consen 58 VTAVDI--NPDALELAKRNAERNGLENVEVVQSDLFEAL-P---DGKFDLIVSNPPFHA--G------------------ 111 (170)
T ss_dssp EEEEES--BHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-C---TTCEEEEEE---SBT--T------------------
T ss_pred EEEEcC--CHHHHHHHHHHHHhcCccccccccccccccc-c---ccceeEEEEccchhc--c------------------
Confidence 455554 566888888877665 21 12334443322 1 248999999999321 1
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 123 RVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 123 ~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+-.+++.++++.|.++|++||+|.++.....
T Consensus 112 ---------~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 112 ---------GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp ---------SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred ---------cccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 112345789999999999999999999877543
No 13
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.21 E-value=0.00044 Score=62.15 Aligned_cols=97 Identities=20% Similarity=0.093 Sum_probs=54.5
Q ss_pred ecCCHHHHHHHHHHHHHHH-H---HHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccC
Q 039679 50 NLPSEDIARSIANRIWITN-A---YWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVG 125 (230)
Q Consensus 50 ~lp~e~~a~~l~~Rsil~~-I---~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~ 125 (230)
-++-+..|..++++.+-.. + ...+..|... ++.. +.||.|||||||..........+ + -.
T Consensus 150 avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~---~~fD~Iv~NPPy~~~~~~~~l~~----------~--~~ 213 (284)
T TIGR03533 150 AVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPG---RKYDLIVSNPPYVDAEDMADLPA----------E--YH 213 (284)
T ss_pred EEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCC---CCccEEEECCCCCCccchhhCCH----------h--hh
Confidence 3333455666666655432 1 0123344322 2222 27999999999986544321100 0 01
Q ss_pred CCCCCCC---cchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 126 HIPSTAP---YCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 126 ~ip~~~~---y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
|-|..+- -+=.+.+..++..|.++|++||++++-+..
T Consensus 214 ~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 214 HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 2222111 122367899999999999999999987764
No 14
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.19 E-value=0.00052 Score=61.67 Aligned_cols=96 Identities=22% Similarity=0.252 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHH-HHH----HHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCcc-CC
Q 039679 53 SEDIARSIANRIWITN-AYW----FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRV-GH 126 (230)
Q Consensus 53 ~e~~a~~l~~Rsil~~-I~~----ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~-~~ 126 (230)
-+..+..+++-.++.+ +-. ....|.-..+... ..+.||.|||+||||..+-...... . ..+- ..
T Consensus 85 i~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~--~-------~~~~~~~ 154 (311)
T PF02384_consen 85 IDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELE--K-------DERFKKY 154 (311)
T ss_dssp S-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGC--T-------TCCCTTC
T ss_pred CcHHHHHHHHhhhhhhccccccccccccccccccccc-cccccccccCCCCcccccccccccc--c-------ccccccc
Confidence 3566777776665556 432 1122222222211 1248999999999999732111100 0 0000 11
Q ss_pred CCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 127 IPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 127 ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
++++ .-.+.. ++..+.+.|++|||+++++|..
T Consensus 155 ~~~~---~~~~~~--Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 155 FPPK---SNAEYA--FIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp SSST---TEHHHH--HHHHHHHTEEEEEEEEEEEEHH
T ss_pred CCCc---cchhhh--hHHHHHhhcccccceeEEecch
Confidence 2222 222332 7889999999999999999974
No 15
>PRK14967 putative methyltransferase; Provisional
Probab=97.18 E-value=0.00075 Score=58.08 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=40.8
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||+||+||||-.......... . .+.+--..++-.+.+.+++..|.++|++||++++..+..
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSR---G----------PARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCeeEEEECCCCCCCCccccccc---C----------hhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 38999999999965432210000 0 000001123445678999999999999999999887765
No 16
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.15 E-value=0.00056 Score=68.82 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=59.4
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
.-++-.+-+..|..++++.+... +- .+...|.+..+.... .+.+|.||||||||.|.|...
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-~~~~d~IvtNPPYg~r~~~~~-------------- 321 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-KGPTGLVISNPPYGERLGEEP-------------- 321 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-cCCCCEEEECCCCcCccCchH--------------
Confidence 34555655777888888888766 42 234556655432211 136899999999999887531
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEe
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.+.+++.+|-+...+.+ +|++++++-+
T Consensus 322 ------------~l~~lY~~lg~~lk~~~-~g~~~~llt~ 348 (702)
T PRK11783 322 ------------ALIALYSQLGRRLKQQF-GGWNAALFSS 348 (702)
T ss_pred ------------HHHHHHHHHHHHHHHhC-CCCeEEEEeC
Confidence 46778888777665554 8999988855
No 17
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.08 E-value=0.00034 Score=60.24 Aligned_cols=95 Identities=24% Similarity=0.209 Sum_probs=53.7
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCC---CCCcchHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPS---TAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~---~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+.||.|||||||.-........+... .|-|. .....-.+.+..++..+.++|++||++++......
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~-----------~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~ 221 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVR-----------FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQ 221 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhh-----------hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccH
Confidence 47999999999985433321111000 00011 01223345677899999999999999988765432
Q ss_pred CCCCCCCccccCCceeEeeEEEecCCceeEEE
Q 039679 165 EDSTRNPFPEHLCFKLVASSEQILSSRYSRVL 196 (230)
Q Consensus 165 ~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~L 196 (230)
.+. ...+-...||.-+. ..+.+. +..|.+
T Consensus 222 ~~~-~~~~l~~~gf~~v~-~~~d~~-~~~r~~ 250 (251)
T TIGR03534 222 GEA-VRALFEAAGFADVE-TRKDLA-GKDRVV 250 (251)
T ss_pred HHH-HHHHHHhCCCCceE-EEeCCC-CCcCee
Confidence 222 12333456887664 355554 345543
No 18
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.07 E-value=0.00076 Score=59.13 Aligned_cols=96 Identities=24% Similarity=0.235 Sum_probs=53.4
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCC---CcchHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTA---PYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~---~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+.||.|||||||..........+. ...|-|..+ ...-.+.+..++..+.++|++||++++-.....
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~-----------v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~ 242 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPE-----------VRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ 242 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCch-----------hhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH
Confidence 479999999999764432211110 001222222 123457888999999999999999988543221
Q ss_pred CCCCCCCccccCCceeEeeEEEecCCceeEEEE
Q 039679 165 EDSTRNPFPEHLCFKLVASSEQILSSRYSRVLL 197 (230)
Q Consensus 165 ~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Li 197 (230)
.+. ...+-...||.-+.. .+.+++ -.|.++
T Consensus 243 ~~~-~~~~l~~~gf~~v~~-~~d~~~-~~r~~~ 272 (275)
T PRK09328 243 GEA-VRALLAAAGFADVET-RKDLAG-RDRVVL 272 (275)
T ss_pred HHH-HHHHHHhCCCceeEE-ecCCCC-CceEEE
Confidence 111 112223457763333 456654 355444
No 19
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.00077 Score=63.26 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=54.4
Q ss_pred ecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccC
Q 039679 50 NLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVG 125 (230)
Q Consensus 50 ~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~ 125 (230)
-.+.|.-+.+.|+..+..= +- +....|.+.-+ ... +.+|.|||+||||.|-|.++
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~--~~~-~~~gvvI~NPPYGeRlg~~~------------------ 317 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK--EPL-EEYGVVISNPPYGERLGSEA------------------ 317 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC--CCC-CcCCEEEeCCCcchhcCChh------------------
Confidence 3434444555555544433 22 22444555321 111 37899999999999988742
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEe
Q 039679 126 HIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 126 ~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.+..||..+.+.+.+.+.-.++.+|.-+
T Consensus 318 --------~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 318 --------LVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred --------hHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 3566999999999999998899988844
No 20
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.87 E-value=0.0011 Score=58.65 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=55.8
Q ss_pred EecCCHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCC
Q 039679 49 VNLPSEDIARSIANRIWITN-AYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHI 127 (230)
Q Consensus 49 V~lp~e~~a~~l~~Rsil~~-I~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~i 127 (230)
+-++.+..|.+++++.+-.. + ..+..|... .+.....+.||.||+||||=-........+. ...|-
T Consensus 114 ~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~-~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e-----------~~~~e 180 (251)
T TIGR03704 114 HAADIDPAAVRCARRNLADAGG-TVHEGDLYD-ALPTALRGRVDILAANAPYVPTDAIALMPPE-----------ARDHE 180 (251)
T ss_pred EEEECCHHHHHHHHHHHHHcCC-EEEEeechh-hcchhcCCCEeEEEECCCCCCchhhhcCCHH-----------HHhCC
Confidence 33334555667777665322 1 123344432 1111122469999999999432222111110 00111
Q ss_pred CCCC---CcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 128 PSTA---PYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 128 p~~~---~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
|... .-+-.+++.+++..|.++|++||++++.....
T Consensus 181 p~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 181 PRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred CHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 1111 11346789999999999999999999887644
No 21
>PRK14968 putative methyltransferase; Provisional
Probab=96.86 E-value=0.0022 Score=52.53 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=51.3
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDST 168 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~ 168 (230)
.||+|+++|||.......+... . ...... ..-.-.+.+.++++.+.++|++||+++++.|...+...
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~-----~-----~~~~~~---~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~ 156 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDD-----W-----LNYALS---GGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDE 156 (188)
T ss_pred CceEEEECCCcCCCCchhhhhh-----h-----hhhhhc---cCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHH
Confidence 6999999999976443211000 0 000000 00011356789999999999999999999987643332
Q ss_pred CCCccccCCceeEeeEEEec
Q 039679 169 RNPFPEHLCFKLVASSEQIL 188 (230)
Q Consensus 169 ~~~lp~h~gl~li~~~~Q~~ 188 (230)
....-...||+++......+
T Consensus 157 l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 157 VLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred HHHHHHHCCCeeeeeeeccc
Confidence 22334455887765444333
No 22
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.86 E-value=0.0012 Score=60.10 Aligned_cols=61 Identities=26% Similarity=0.256 Sum_probs=39.4
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcc---hHHHHHHHHHHHhhccccCCEEEEEEe
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYC---LSECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~---~~~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.||.|||||||-.......... +. .|-|..+-++ =.+++.+++..|.++|++||++++-+.
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~----------~~--~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPA----------EY--RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccEEEECCCCCCccchhhcCH----------hh--ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7999999999976543211100 00 1223222111 126889999999999999999988644
No 23
>PHA03412 putative methyltransferase; Provisional
Probab=96.82 E-value=0.0021 Score=56.93 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=53.5
Q ss_pred CEEEEecCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCcc
Q 039679 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRV 124 (230)
Q Consensus 45 pf~vV~lp~e~~a~~l~~Rsil~~I~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~ 124 (230)
.+.-||+ +..|..++++.+- ++- ...+|....++. +.||.|||+|||+.......
T Consensus 78 ~V~aVEI--D~~Al~~Ar~n~~-~~~-~~~~D~~~~~~~----~~FDlIIsNPPY~~~~~~d~----------------- 132 (241)
T PHA03412 78 EIVCVEL--NHTYYKLGKRIVP-EAT-WINADALTTEFD----TLFDMAISNPPFGKIKTSDF----------------- 132 (241)
T ss_pred EEEEEEC--CHHHHHHHHhhcc-CCE-EEEcchhccccc----CCccEEEECCCCCCcccccc-----------------
Confidence 3555665 4556777776531 111 245666554432 38999999999998442110
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 125 GHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 125 ~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
+..|.=..+...|+..|.++++ .|.+ +||....
T Consensus 133 -----~ar~~g~~~~~~li~~A~~Ll~-~G~~--ILP~~~~ 165 (241)
T PHA03412 133 -----KGKYTGAEFEYKVIERASQIAR-QGTF--IIPQMSA 165 (241)
T ss_pred -----CCcccccHHHHHHHHHHHHHcC-CCEE--EeCcccc
Confidence 1123334567789999999555 5554 8997654
No 24
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.74 E-value=0.0011 Score=62.73 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEEe----eccCCCCCCCccccCCceeEe
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFYP----VLREDSTRNPFPEHLCFKLVA 182 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~lP----~~~~~~~~~~lp~h~gl~li~ 182 (230)
+.++..++|..|.++|++||+++|.-- ..+++....-+.+|+++.++.
T Consensus 347 l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 347 LAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 456788999999999999999997753 332222222344688888765
No 25
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.72 E-value=0.00088 Score=63.73 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=51.6
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||+|++|||+---...++. ++. .-+.++.....+.++..++|..|+++|++||+|||--=+...+.
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~------p~~------~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE 373 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNH------PEV------LRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEE 373 (431)
T ss_pred ccCCEEEECCCCCCCccccCC------hHH------HHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh
Confidence 479999999999421111211 100 00111222335667789999999999999999999765554343
Q ss_pred CCC----CccccCCceeEe
Q 039679 168 TRN----PFPEHLCFKLVA 182 (230)
Q Consensus 168 ~~~----~lp~h~gl~li~ 182 (230)
.+. -+..||++.++.
T Consensus 374 ne~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 374 NTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred CHHHHHHHHHhCCCcEEec
Confidence 332 233589998765
No 26
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.68 E-value=0.0019 Score=62.59 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=24.4
Q ss_pred chHHHHHHHH-HHHhhccccCCEEEEEEeecc
Q 039679 134 CLSECVHDLL-DLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 134 ~~~~~~~dLL-~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+...++..++ +.|.++|++||+++|++|...
T Consensus 169 g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~ 200 (524)
T TIGR02987 169 GVGTEYSRVFEEISLEIANKNGYVSIISPASW 200 (524)
T ss_pred CcccHHHHHHHHHHHHhcCCCCEEEEEEChHH
Confidence 4445666554 789999999999999999754
No 27
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.51 E-value=0.0023 Score=60.87 Aligned_cols=127 Identities=23% Similarity=0.158 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHH-H-HHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCC
Q 039679 54 EDIARSIANRIWITN-A-YWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTA 131 (230)
Q Consensus 54 e~~a~~l~~Rsil~~-I-~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~ 131 (230)
+..|.+++++.+-.. + ...+..|.....+.. .+.||.|||||||--.... ...... ..|=|..+
T Consensus 284 S~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~--~~~FDLIVSNPPYI~~~e~-~l~~~~-----------v~~EP~~A 349 (423)
T PRK14966 284 SPPALETARKNAADLGARVEFAHGSWFDTDMPS--EGKWDIIVSNPPYIENGDK-HLLQGD-----------LRFEPQIA 349 (423)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEcchhcccccc--CCCccEEEECCCCCCcchh-hhcchh-----------hhcCHHHH
Confidence 445666666654322 1 012444544332221 1369999999999754321 110000 01112211
Q ss_pred Cc---chHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEE
Q 039679 132 PY---CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLL 197 (230)
Q Consensus 132 ~y---~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Li 197 (230)
=+ +=.+++..+++.|.++|++||++++-......+... .+-...||..+.. .+.++++ -|.++
T Consensus 350 L~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~-~ll~~~Gf~~v~v-~kDl~G~-dR~v~ 415 (423)
T PRK14966 350 LTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVR-GVLAENGFSGVET-LPDLAGL-DRVTL 415 (423)
T ss_pred hhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHH-HHHHHCCCcEEEE-EEcCCCC-cEEEE
Confidence 11 123568899999999999999998776543333222 2333457775543 6888754 66555
No 28
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0095 Score=53.66 Aligned_cols=139 Identities=20% Similarity=0.084 Sum_probs=70.3
Q ss_pred hhhhccCCCHHHHHHHHHHcC--CCccc-cccCCCCC--------CCCCCE-EEEecCCHHHHHHHHHHHHHHH-HHHHH
Q 039679 7 FFHRLLDYRKPEVESLAYLFG--VNDAL-EWKLPKHH--------HPDSPF-HFVNLPSEDIARSIANRIWITN-AYWFA 73 (230)
Q Consensus 7 fs~~h~~fr~~El~sl~~l~g--i~~~~-~~~~~~~~--------~~~~pf-~vV~lp~e~~a~~l~~Rsil~~-I~~ll 73 (230)
.+.++.-.|++|-+-|++... ....- .+...-.. -...|- -|+-.+-..+|.++|++.+-.. + .
T Consensus 84 ~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~ 160 (280)
T COG2890 84 KVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---V 160 (280)
T ss_pred eeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---c
Confidence 345677788888888887733 21100 00000000 001121 2222332345777777766555 2 0
Q ss_pred hhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCC---CcchHHHHHHHHHHHhhcc
Q 039679 74 KADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTA---PYCLSECVHDLLDLAGRIL 150 (230)
Q Consensus 74 ~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~---~y~~~~~~~dLL~~Aa~~L 150 (230)
..-.-...|=..+++.||.|||+|||=-.+ .....++. -.|=|..+ .-+=.+++..+++.|...|
T Consensus 161 ~~~~~~~dlf~~~~~~fDlIVsNPPYip~~-~~~~~~~~-----------~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 161 RVLVVQSDLFEPLRGKFDLIVSNPPYIPAE-DPELLPEV-----------VRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred cEEEEeeecccccCCceeEEEeCCCCCCCc-ccccChhh-----------hccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 000111244445556899999999996544 11110000 00111100 0022358999999999999
Q ss_pred ccCCEEEEEE
Q 039679 151 VMGGRLVYFY 160 (230)
Q Consensus 151 ~~gGRLvf~l 160 (230)
++||-+.+-.
T Consensus 229 ~~~g~l~le~ 238 (280)
T COG2890 229 KPGGVLILEI 238 (280)
T ss_pred CCCcEEEEEE
Confidence 9999887653
No 29
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.33 E-value=0.0012 Score=62.66 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEE----eeccCCCCCCCccccCCceeEe
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFY----PVLREDSTRNPFPEHLCFKLVA 182 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~l----P~~~~~~~~~~lp~h~gl~li~ 182 (230)
+..+..++|+.|+++|++||+|||.- |..+++....-+..||+|.+..
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~ 410 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEP 410 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecC
Confidence 45557899999999999999998763 3332222222445688888653
No 30
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.23 E-value=0.0013 Score=62.52 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCC----CCccccCCceeEee
Q 039679 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTR----NPFPEHLCFKLVAS 183 (230)
Q Consensus 134 ~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~----~~lp~h~gl~li~~ 183 (230)
.+..+..++|+.|.++|++||+|||.--+...+..+ .-+..|++|+++..
T Consensus 353 ~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 353 SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecc
Confidence 345567889999999999999999864443222212 13445777777653
No 31
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.21 E-value=0.004 Score=55.26 Aligned_cols=48 Identities=23% Similarity=0.154 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCC----CccccCCceeE
Q 039679 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRN----PFPEHLCFKLV 181 (230)
Q Consensus 134 ~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~----~lp~h~gl~li 181 (230)
.+.....++|+.|+++|++||+|||---+...++.+. -+-.|+++.++
T Consensus 173 ~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~ 224 (264)
T TIGR00446 173 EISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEE 224 (264)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEe
Confidence 4556778899999999999999998855444332221 23346676544
No 32
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.20 E-value=0.0074 Score=54.02 Aligned_cols=95 Identities=22% Similarity=0.183 Sum_probs=54.3
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCC---cchHHHHHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAP---YCLSECVHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~---y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
.||.||+||||--..... ..+ ....|-|..+- -+=.+.+..++..|.++|++||.++|=......
T Consensus 182 ~fDlIvsNPPyi~~~~~~-~~~-----------~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLA-DLP-----------NVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred CccEEEECCCCCCcchhh-cCC-----------cccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 699999999995432211 000 00112232211 112358899999999999999999876554322
Q ss_pred CCCCCCccc-cCCceeEeeEEEecCCceeEEEEE
Q 039679 166 DSTRNPFPE-HLCFKLVASSEQILSSRYSRVLLT 198 (230)
Q Consensus 166 ~~~~~~lp~-h~gl~li~~~~Q~~~~k~sR~Lit 198 (230)
+. ...+.. ..||.-+. +.+.+++ ..|.++.
T Consensus 250 ~~-~~~~~~~~~~~~~~~-~~~D~~g-~~R~~~~ 280 (284)
T TIGR00536 250 KS-LKELLRIKFTWYDVE-NGRDLNG-KERVVLG 280 (284)
T ss_pred HH-HHHHHHhcCCCceeE-EecCCCC-CceEEEE
Confidence 22 123333 34665443 3677774 4676654
No 33
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.17 E-value=0.0019 Score=61.52 Aligned_cols=48 Identities=27% Similarity=0.314 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCC----CCccccCCceeEe
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTR----NPFPEHLCFKLVA 182 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~----~~lp~h~gl~li~ 182 (230)
+.++...+|..|+++|++||+|+|---+...++++ .-+..|+++.++.
T Consensus 352 l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 352 LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEec
Confidence 44566789999999999999999986554433322 2234688877654
No 34
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.15 E-value=0.0062 Score=57.64 Aligned_cols=82 Identities=26% Similarity=0.266 Sum_probs=50.2
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|++|||+----..++. +.... ..-+..-..+..+...+|+.|+++|++||+|||..-+...+.
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~------p~~~~------~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRH------PDIKW------LRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred cccCEEEEcCCCCCCcccccC------cchhh------cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 379999999997542222211 10000 000011235667788999999999999999999866554333
Q ss_pred CCC----CccccCCceeE
Q 039679 168 TRN----PFPEHLCFKLV 181 (230)
Q Consensus 168 ~~~----~lp~h~gl~li 181 (230)
.+. -+..||++.+.
T Consensus 376 ne~~v~~~l~~~~~~~~~ 393 (426)
T TIGR00563 376 NSEQIKAFLQEHPDFPFE 393 (426)
T ss_pred CHHHHHHHHHhCCCCeec
Confidence 332 34568888654
No 35
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.09 E-value=0.0063 Score=53.95 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=15.4
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCcccccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASG 105 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~ 105 (230)
..++|..+ |+...+.+.||.++|||||++ +|.
T Consensus 96 ~~~~DlR~-~LP~~~~~~fD~f~TDPPyT~-~G~ 127 (243)
T PF01861_consen 96 AVHYDLRD-PLPEELRGKFDVFFTDPPYTP-EGL 127 (243)
T ss_dssp EE---TTS----TTTSS-BSEEEE---SSH-HHH
T ss_pred EEEecccc-cCCHHHhcCCCEEEeCCCCCH-HHH
Confidence 45666654 333445569999999999999 444
No 36
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.02 E-value=0.0095 Score=56.01 Aligned_cols=43 Identities=23% Similarity=0.518 Sum_probs=32.9
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEE
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.||.|||+|||-.-... -.++...++..|.++|++||+|.++.
T Consensus 298 ~fDlIlsNPPfh~~~~~-----------------------------~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHAL-----------------------------TDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccC-----------------------------CHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 79999999999751100 11345778999999999999998883
No 37
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.00 E-value=0.018 Score=53.28 Aligned_cols=47 Identities=28% Similarity=0.355 Sum_probs=35.7
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|||+|||.. +.. .-.+...+++..|.++|++||+|.++....
T Consensus 260 ~~fDlIvsNPPFH~--g~~---------------------------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 260 GRFDMIISNPPFHD--GIQ---------------------------TSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred CCccEEEECCCccC--Ccc---------------------------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 47999999999963 110 012456889999999999999999986543
No 38
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.00 E-value=0.0076 Score=56.89 Aligned_cols=47 Identities=34% Similarity=0.396 Sum_probs=34.0
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+.||.||+||||-.+.. +. -.....-+.+++..|.++|++||.|++.
T Consensus 292 ~~fDlVilDPP~f~~~k--~~-----------------------l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 292 EKFDVIVMDPPKFVENK--SQ-----------------------LMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCCEEEECCCCCCCCh--HH-----------------------HHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 37999999999965321 10 0112223788999999999999999875
No 39
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.76 E-value=0.012 Score=57.11 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=49.7
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCC---cchHHHHHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAP---YCLSECVHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~---y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
.||.|||+|||--......... ...+|-|..+- .+=.+.+..+++.|.++|++||++++-.-....
T Consensus 206 ~fDlIvsNPPYi~~~~~~~l~~-----------~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~ 274 (506)
T PRK01544 206 KFDFIVSNPPYISHSEKSEMAI-----------ETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE 274 (506)
T ss_pred CccEEEECCCCCCchhhhhcCc-----------hhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH
Confidence 7999999999986433211100 01122233221 223457899999999999999998764322111
Q ss_pred CCCCCCccccCCceeEeeEEEecCCc
Q 039679 166 DSTRNPFPEHLCFKLVASSEQILSSR 191 (230)
Q Consensus 166 ~~~~~~lp~h~gl~li~~~~Q~~~~k 191 (230)
+. -..+-...||..+. +.+.++++
T Consensus 275 ~~-v~~~~~~~g~~~~~-~~~D~~g~ 298 (506)
T PRK01544 275 EA-VTQIFLDHGYNIES-VYKDLQGH 298 (506)
T ss_pred HH-HHHHHHhcCCCceE-EEecCCCC
Confidence 11 11222334665443 35666654
No 40
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.009 Score=55.56 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=52.2
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDST 168 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~ 168 (230)
.||.|+.|||=--.-..||.... ... . -+..-..+..+-..||+.|.++|++||+|||--=+...+..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~------~~~-~-----~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN 296 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDV------KWR-R-----TPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN 296 (355)
T ss_pred cCcEEEECCCCCCCcccccCccc------ccc-C-----CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence 59999999996544334432111 000 0 01123457888899999999999999999997433332322
Q ss_pred C----CCccccCCceeEee
Q 039679 169 R----NPFPEHLCFKLVAS 183 (230)
Q Consensus 169 ~----~~lp~h~gl~li~~ 183 (230)
+ .-+.+|++++++..
T Consensus 297 E~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 297 EEVVERFLERHPDFELEPV 315 (355)
T ss_pred HHHHHHHHHhCCCceeecc
Confidence 2 24556888877764
No 41
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.042 Score=50.18 Aligned_cols=44 Identities=30% Similarity=0.513 Sum_probs=34.0
Q ss_pred ccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 87 KEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 87 ~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
.+.||+|||+||.- +|.. -..++-+.++..|+++|++||+|=++
T Consensus 222 ~~kfd~IisNPPfh--~G~~---------------------------v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 222 EGKFDLIISNPPFH--AGKA---------------------------VVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred cccccEEEeCCCcc--CCcc---------------------------hhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 34899999999974 4432 12345678999999999999999666
No 42
>PHA03411 putative methyltransferase; Provisional
Probab=94.93 E-value=0.033 Score=50.45 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=51.3
Q ss_pred CEEEEecCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCcc
Q 039679 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRV 124 (230)
Q Consensus 45 pf~vV~lp~e~~a~~l~~Rsil~~I~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~ 124 (230)
.+.-||+ +..+.+++++.. .++- .+.+|...... . +.||+||+||||+.+...+.... ..+
T Consensus 90 ~V~gVDi--sp~al~~Ar~n~-~~v~-~v~~D~~e~~~-~---~kFDlIIsNPPF~~l~~~d~~~~---~~~-------- 150 (279)
T PHA03411 90 KIVCVEL--NPEFARIGKRLL-PEAE-WITSDVFEFES-N---EKFDVVISNPPFGKINTTDTKDV---FEY-------- 150 (279)
T ss_pred EEEEEEC--CHHHHHHHHHhC-cCCE-EEECchhhhcc-c---CCCcEEEEcCCccccCchhhhhh---hhh--------
Confidence 3445555 334555555531 1111 24455543321 1 37999999999998644321100 000
Q ss_pred CCCCCCCCcchHHH-HHHHHHHHhhccccCCEEEEEE
Q 039679 125 GHIPSTAPYCLSEC-VHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 125 ~~ip~~~~y~~~~~-~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
....++..-+ +.+++.-.+.+|+++|++-|.+
T Consensus 151 ----~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 151 ----TGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred ----ccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 0012233334 5788999999999999776663
No 43
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.84 E-value=0.038 Score=55.74 Aligned_cols=49 Identities=29% Similarity=0.452 Sum_probs=34.2
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+.||.||+||||=... ++. .. ..+...-+.+|+..|.++|++||.|++-
T Consensus 607 ~~fDlIilDPP~f~~~--~~~-~~--------------------~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 607 EQFDLIFIDPPTFSNS--KRM-ED--------------------SFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCcCEEEECCCCCCCC--Ccc-ch--------------------hhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4799999999997531 110 00 0123345788999999999999998665
No 44
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.073 Score=54.13 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCC--Cc-cccCCceeEee
Q 039679 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRN--PF-PEHLCFKLVAS 183 (230)
Q Consensus 134 ~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~--~l-p~h~gl~li~~ 183 (230)
.+..++..+++..+.+|+++|+||-.++....+.=.. .. =...||.+...
T Consensus 562 ~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~ 614 (875)
T COG1743 562 EFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRA 614 (875)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecc
Confidence 4788899999999999999999999999876553111 11 23456666554
No 45
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=94.10 E-value=0.022 Score=52.42 Aligned_cols=34 Identities=12% Similarity=0.352 Sum_probs=23.0
Q ss_pred HHhhccccCCEEEEEEeeccCCCCCCCccccCCceeE
Q 039679 145 LAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLV 181 (230)
Q Consensus 145 ~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li 181 (230)
.+++++.+||.+.|+.|...+. ..+....||++.
T Consensus 232 ~~~EL~~~GGe~~fi~~mi~eS---~~~~~~~gwfts 265 (321)
T PRK11727 232 QQAELWCEGGEVAFIKRMIEES---KAFAKQVLWFTS 265 (321)
T ss_pred hhhheeeCCcEeeeehHhhHHH---HHHHhhCcEEEE
Confidence 5678888999999999876543 234445555443
No 46
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.63 E-value=0.19 Score=48.82 Aligned_cols=101 Identities=22% Similarity=0.196 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHH-HHH---HHhhcCCCCCCCC--CcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCC-
Q 039679 54 EDIARSIANRIWITN-AYW---FAKADNNLPPWRP--GLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGH- 126 (230)
Q Consensus 54 e~~a~~l~~Rsil~~-I~~---ll~~D~t~~p~r~--~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~- 126 (230)
...-.+|++=-++.| |-+ ..+.|.-.+|+.. ...+.||.||+.|||+.-.-...... .. .......+
T Consensus 223 ~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~--~~----~~~~~~~~~ 296 (489)
T COG0286 223 NDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLE--SE----QDERFFFYG 296 (489)
T ss_pred CHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCcccccccccc--cc----ccccccccC
Confidence 444566777777777 642 4555555677763 23468999999999983222211100 00 00011111
Q ss_pred CCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 127 IPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 127 ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
.|++++-. ...+++.....|++|||..+++|.-.
T Consensus 297 ~~~~~~~~----~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 297 VFPTKNSA----DLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred CCCCCCch----HHHHHHHHHHhcCCCceEEEEecCCc
Confidence 12222221 14577888899999999999999653
No 47
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.50 E-value=0.12 Score=43.22 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=16.7
Q ss_pred CCCcccccceeEeCCCCcccccc
Q 039679 83 RPGLKEVFDAIICDPPYGVRASG 105 (230)
Q Consensus 83 r~~l~e~~DaIvtDPPYGiRa~~ 105 (230)
...+++.||.||+||||-..+-.
T Consensus 80 ~~~l~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred hhhcCCCceEEEECCCCCCHHHH
Confidence 33456799999999999554443
No 48
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=93.19 E-value=0.12 Score=43.88 Aligned_cols=62 Identities=26% Similarity=0.269 Sum_probs=48.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCc-eeEEEEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSR-YSRVLLTMVK 201 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k-~sR~Lit~~K 201 (230)
+.++++.+.++|++||+++++.+...... ...++..-||.+....+-++.+- --|+|+..+|
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALKGRDPEEE-IAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCChHHH-HHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 36788999999999999999977643332 33566677999999998888765 5788888776
No 49
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.58 E-value=0.11 Score=45.88 Aligned_cols=51 Identities=29% Similarity=0.514 Sum_probs=42.1
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILV 151 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~ 151 (230)
.+.+|..+.||.++ .||++.+. ||.|.-.. .+..|..+.|+|+
T Consensus 105 fv~~dAe~LPf~D~---sFD~vt~~--fglrnv~d--------------------------------~~~aL~E~~RVlK 147 (238)
T COG2226 105 FVVGDAENLPFPDN---SFDAVTIS--FGLRNVTD--------------------------------IDKALKEMYRVLK 147 (238)
T ss_pred EEEechhhCCCCCC---ccCEEEee--ehhhcCCC--------------------------------HHHHHHHHHHhhc
Confidence 37899999999987 99999986 78765542 2567999999999
Q ss_pred cCCEEEEE
Q 039679 152 MGGRLVYF 159 (230)
Q Consensus 152 ~gGRLvf~ 159 (230)
||||+++.
T Consensus 148 pgG~~~vl 155 (238)
T COG2226 148 PGGRLLVL 155 (238)
T ss_pred CCeEEEEE
Confidence 99999776
No 50
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=92.57 E-value=0.11 Score=46.31 Aligned_cols=40 Identities=45% Similarity=0.529 Sum_probs=28.5
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf 158 (230)
+.||+||-|||==-.||- -|+. .|-....++|++||||.=
T Consensus 204 ~sfDaIiHDPPRfS~Age--------------------------LYse-----efY~El~RiLkrgGrlFH 243 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGE--------------------------LYSE-----EFYRELYRILKRGGRLFH 243 (287)
T ss_pred cccceEeeCCCccchhhh--------------------------HhHH-----HHHHHHHHHcCcCCcEEE
Confidence 479999999995554441 2332 355667799999999943
No 51
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=92.23 E-value=0.16 Score=46.18 Aligned_cols=44 Identities=34% Similarity=0.412 Sum_probs=30.4
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+.||.||+|||==. | . ...+..-+.+|+..|.++|++||.|++-
T Consensus 194 ~~fD~IIlDPPsF~----k-~-----------------------~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 194 GRFDLIILDPPSFA----K-S-----------------------KFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp T-EEEEEE--SSEE----S-S-----------------------TCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCEEEECCCCCC----C-C-----------------------HHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999322 1 0 1234556789999999999999998655
No 52
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=91.99 E-value=0.21 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+..++|+.+.++|++||++++-...
T Consensus 143 ~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 143 LVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 4578999999999999999996443
No 53
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.30 E-value=0.14 Score=49.52 Aligned_cols=64 Identities=30% Similarity=0.379 Sum_probs=40.0
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|+.|+|=-=--..||. +... ...-+...-.+..+-..+|+.|+++|++||+|||--=|.
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~------p~~~------~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKD------PDAL------KNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhcCeEEEcCCCCCCcccccC------HHHh------hhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 479999999995321111221 1000 000011123577888999999999999999999975443
No 54
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.40 E-value=0.5 Score=39.29 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEee
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+...++++.+.++|++||++++..+.
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 35678899999999999999986544
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=90.13 E-value=0.56 Score=38.92 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeE
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASS 184 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~ 184 (230)
.++++.+.++|++||++++-.+...+......+....||..+...
T Consensus 111 ~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 111 TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 567888999999999998865433222212234445577666543
No 56
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=90.07 E-value=0.46 Score=45.07 Aligned_cols=47 Identities=43% Similarity=0.526 Sum_probs=35.7
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+.||.||.|||==.|-.. .-++...=+.+|+..|.++|+|||.+++.
T Consensus 289 ~~fDlIilDPPsF~r~k~-------------------------~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 289 EKFDLIILDPPSFARSKK-------------------------QEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred CcccEEEECCcccccCcc-------------------------cchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 389999999993332111 12456666899999999999999999887
No 57
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.85 E-value=0.61 Score=45.18 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.9
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCC-CCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGH-IPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~-ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
.||.|+++||||..-+.-......... .--..| +|++..-++. ++..+...|.+|||...++|.-.
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d-----~~~~~~~l~~~~~~~~a-----fi~h~~~~L~~gG~~aiI~~~gv 359 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDV-----RFKDAGTLAPNSKADLA-----FVLHALYVLGQEGTAAIVCFPGI 359 (501)
T ss_pred cCCEEeecCCccccccccccccccccc-----chhcccCCCCCchhhHH-----HHHHHHHhcCCCCeEEEEecCCc
Confidence 489999999999643211000000000 000122 3555444333 55667778999999999999654
No 58
>PRK00811 spermidine synthase; Provisional
Probab=89.84 E-value=0.43 Score=42.83 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.+.++|++||.++++..
T Consensus 171 ~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 171 KEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred HHHHHHHHHhcCCCcEEEEeCC
Confidence 5678889999999999998744
No 59
>PLN02672 methionine S-methyltransferase
Probab=89.57 E-value=0.62 Score=49.46 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=47.6
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCC---CCccCCCCCCCC---cchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPD---DKRVGHIPSTAP---YCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~---~~~~~~ip~~~~---y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.||.||++|||=-..-.....+...+. -|+ +..+.+.+-... -+=.+++..++..|.++|++||.+.|=+=.
T Consensus 203 ~fDlIVSNPPYI~~~e~~~l~~eV~~~--ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 203 ELDRIVGCIPQILNPNPEAMSKLVTEN--ASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred ceEEEEECCCcCCCcchhhcChhhhhc--cccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 599999999995443222111111000 010 011123333221 123468999999999999999987654221
Q ss_pred ccCCCCCCCccccCCceeEee
Q 039679 163 LREDSTRNPFPEHLCFKLVAS 183 (230)
Q Consensus 163 ~~~~~~~~~lp~h~gl~li~~ 183 (230)
.-++.....+-...||+.+..
T Consensus 281 ~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 281 RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred cHHHHHHHHHHHHCCCCeeEE
Confidence 111111101334567776544
No 60
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.00 E-value=0.61 Score=41.06 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=50.7
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHH-HHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSEC-VHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~-~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
.+|.|+|||||..-.+.++.+...... .... +.. ...+...- +.+.+..+.++|+++|-+....+......
T Consensus 35 svDli~tdppy~~~~~~~~~~~~~~~~-~~~~----~~~---~~~~~~~~~~~~~~~~~~rvl~~~~~~~v~~~~~~~~~ 106 (302)
T COG0863 35 SVDLIFTDPPYNNVKAGRKLGFLKRWL-DAWD----GWD---SRGIYLKFILLQWLAEQKRVLKPGGSLYVIDPFSNLAR 106 (302)
T ss_pred ceeEEEcCCCccccccccccccccccc-hhhh----hhh---hHHHHHHHHHHHHHHHhhheecCCCEEEEECCchhhhH
Confidence 789999999999866543221110000 0000 000 01112233 67788899999999999988888644333
Q ss_pred CCCCccccCCceeEeeE
Q 039679 168 TRNPFPEHLCFKLVASS 184 (230)
Q Consensus 168 ~~~~lp~h~gl~li~~~ 184 (230)
........||..+...
T Consensus 107 -~~~~~~~~gf~~~~~i 122 (302)
T COG0863 107 -IEDIAKKLGFEILGKI 122 (302)
T ss_pred -HHHHHHhCCCeEeeeE
Confidence 2233344788887665
No 61
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=87.85 E-value=0.98 Score=38.11 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=32.6
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|..||||..... ..+++..|.+ ..+|.++|-+++=.+.. +
T Consensus 113 ~~fDiIflDPPY~~~~~------------------------------~~~~l~~l~~--~~~l~~~~~ii~E~~~~--~- 157 (183)
T PF03602_consen 113 EKFDIIFLDPPYAKGLY------------------------------YEELLELLAE--NNLLNEDGLIIIEHSKK--E- 157 (183)
T ss_dssp S-EEEEEE--STTSCHH------------------------------HHHHHHHHHH--TTSEEEEEEEEEEEETT--S-
T ss_pred CCceEEEECCCcccchH------------------------------HHHHHHHHHH--CCCCCCCEEEEEEecCC--C-
Confidence 48999999999987221 2333443332 48999999776654432 1
Q ss_pred CCCCccc-cCCceeEee
Q 039679 168 TRNPFPE-HLCFKLVAS 183 (230)
Q Consensus 168 ~~~~lp~-h~gl~li~~ 183 (230)
.++. .++|.++..
T Consensus 158 ---~~~~~~~~~~~~~~ 171 (183)
T PF03602_consen 158 ---DLPESPGNWELIKE 171 (183)
T ss_dssp ---SS-SEETTEEEEEE
T ss_pred ---CCccCCCCEEEEEE
Confidence 2333 456877754
No 62
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.57 E-value=0.73 Score=40.92 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.6
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.++++.++++|++||.+++..+
T Consensus 166 ~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 166 KEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred HHHHHHHHHHhCCCcEEEEcCC
Confidence 5678889999999999998843
No 63
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=87.34 E-value=0.47 Score=41.55 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=43.6
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH----HHHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN----AYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~----I~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
...|++ |++ ..+++++.+-.. |- .+.+|....|++++ .||+|.|= ||+|.-..
T Consensus 75 v~~vD~-s~~-ML~~a~~k~~~~~~~~i~-~v~~da~~lp~~d~---sfD~v~~~--fglrn~~d--------------- 131 (233)
T PF01209_consen 75 VVGVDI-SPG-MLEVARKKLKREGLQNIE-FVQGDAEDLPFPDN---SFDAVTCS--FGLRNFPD--------------- 131 (233)
T ss_dssp EEEEES--HH-HHHHHHHHHHHTT--SEE-EEE-BTTB--S-TT----EEEEEEE--S-GGG-SS---------------
T ss_pred EEEecC-CHH-HHHHHHHHHHhhCCCCee-EEEcCHHHhcCCCC---ceeEEEHH--hhHHhhCC---------------
Confidence 444454 333 555555443322 21 47789999999875 89999983 67764331
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
....|..+.++|+|||+++++
T Consensus 132 -----------------~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 132 -----------------RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------HHHHHHHHHHHcCCCeEEEEe
Confidence 234688999999999999876
No 64
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=86.94 E-value=0.7 Score=37.73 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=36.0
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
+.+|....|+..+ .||+|++. ||.+.-. + ....|+.+.++|+|
T Consensus 31 ~~~d~~~lp~~~~---~fD~v~~~--~~l~~~~-------------------------------d-~~~~l~ei~rvLkp 73 (160)
T PLN02232 31 IEGDAIDLPFDDC---EFDAVTMG--YGLRNVV-------------------------------D-RLRAMKEMYRVLKP 73 (160)
T ss_pred EEechhhCCCCCC---CeeEEEec--chhhcCC-------------------------------C-HHHHHHHHHHHcCc
Confidence 5667777776554 89999983 5553211 0 24578899999999
Q ss_pred CCEEEEE
Q 039679 153 GGRLVYF 159 (230)
Q Consensus 153 gGRLvf~ 159 (230)
||++++.
T Consensus 74 GG~l~i~ 80 (160)
T PLN02232 74 GSRVSIL 80 (160)
T ss_pred CeEEEEE
Confidence 9999887
No 65
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=86.92 E-value=0.61 Score=38.84 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=42.8
Q ss_pred cceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCC
Q 039679 90 FDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTR 169 (230)
Q Consensus 90 ~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~ 169 (230)
||.|+.|||.=.+...++.+ ...|++. .+..++. +| -..+++.+||-+.+|..........
T Consensus 1 fdvI~~DPPW~~~~~~~~~~-------------~~~~Y~t---m~~~~i~-~L--pv~~l~~~~~~lflWvTn~~~~~~~ 61 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGG-------------AEAHYPT---MSLDEIK-SL--PVPQLAAPGALLFLWVTNSQLPEAK 61 (176)
T ss_pred CCEEEEeCCCCCcCcccccc-------------cccCCCc---cCHHHHH-hC--CHHHhCCCCcEEEEEeccchhhHHH
Confidence 79999999999877665431 1112111 1222222 22 2456777888999996543322211
Q ss_pred CCccccCCceeEeeE
Q 039679 170 NPFPEHLCFKLVASS 184 (230)
Q Consensus 170 ~~lp~h~gl~li~~~ 184 (230)
..+-.+=||+.++.-
T Consensus 62 ~~l~~~WGf~~~~~~ 76 (176)
T PF05063_consen 62 LELFPAWGFEYVTEW 76 (176)
T ss_pred HHHHHhCCCEEEEEE
Confidence 334445578877664
No 66
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=86.68 E-value=1.1 Score=40.88 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=37.9
Q ss_pred ccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCC---CCCcchHHHHHHHHHHHhhccccCCEEEEEE
Q 039679 87 KEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPS---TAPYCLSECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 87 ~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~---~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.+..|.|||+|||=.-.-.+..... +. .|-|. -..-+-.+.+..+...|.++|.+||.+.|=+
T Consensus 220 ~~~~dllvsNPPYI~~dD~~~l~~e-V~----------~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 220 EGKIDLLVSNPPYIRKDDNRQLKPE-VR----------LYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cCceeEEecCCCcccccchhhcCch-he----------ecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 3588999999999654333211110 00 01111 0112334677788899999999999876653
No 67
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=86.68 E-value=0.9 Score=31.58 Aligned_cols=39 Identities=44% Similarity=0.582 Sum_probs=30.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+.+|.|++++|++.- .+....++..+.++|++||.+++.
T Consensus 65 ~~~d~i~~~~~~~~~---------------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 65 ESFDVIISDPPLHHL---------------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CceEEEEEccceeeh---------------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 378999999997752 234567888888999999999876
No 68
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=86.63 E-value=0.73 Score=38.64 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=32.9
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCCC--CccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTRN--PFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~--~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
.++++.+.++|++||+++++........... +.....|++.+..-.-++ ..|.++.+
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG---PDRHLVIL 180 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC---CceEEEEE
Confidence 4677888999999999999866443222110 112234666665433222 35665543
No 69
>PRK01581 speE spermidine synthase; Validated
Probab=86.33 E-value=0.88 Score=42.90 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.1
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
.++++.+.+.|++||.+|.+
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 57889999999999999887
No 70
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=86.27 E-value=0.36 Score=43.46 Aligned_cols=52 Identities=33% Similarity=0.421 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHhhcc----ccCCEEEEEEeeccCCCCC----CCccccCCceeEeeE
Q 039679 133 YCLSECVHDLLDLAGRIL----VMGGRLVYFYPVLREDSTR----NPFPEHLCFKLVASS 184 (230)
Q Consensus 133 y~~~~~~~dLL~~Aa~~L----~~gGRLvf~lP~~~~~~~~----~~lp~h~gl~li~~~ 184 (230)
-.+..+-..+|+.|++++ ++||+|||--=+...++.+ .-+.+|+.++++...
T Consensus 188 ~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283)
T PF01189_consen 188 EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIP 247 (283)
T ss_dssp HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCE
T ss_pred chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 357888899999999999 9999999985443333322 245568888887654
No 71
>PRK03612 spermidine synthase; Provisional
Probab=85.47 E-value=0.98 Score=44.11 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=17.9
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.++++.+.++|++||.+++..
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEec
Confidence 567888999999999998864
No 72
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.15 E-value=0.28 Score=44.79 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=23.0
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVR 102 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiR 102 (230)
.+..|.+ +|+...+++.||.+||||||-+-
T Consensus 205 ~~~~Dlr-~plpe~~~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 205 AFVFDLR-NPLPEDLKRKFDVFITDPPETIK 234 (354)
T ss_pred heeehhc-ccChHHHHhhCCeeecCchhhHH
Confidence 5666665 46667777899999999999763
No 73
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.47 E-value=1.2 Score=37.29 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCCEEEEecCCHHHHHHHHHHHHHHH-HH-HHHhhcCCCCCCCCCcccccceeEeCCCCcccccc
Q 039679 43 DSPFHFVNLPSEDIARSIANRIWITN-AY-WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASG 105 (230)
Q Consensus 43 ~~pf~vV~lp~e~~a~~l~~Rsil~~-I~-~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~ 105 (230)
.++=.+|.++=++.|..|.+|.+..- |- .++.+|.....+.. +.||..|-|||+|-|-.+
T Consensus 69 ~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~---g~fDtaviNppFGTk~~~ 130 (185)
T KOG3420|consen 69 PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKG---GIFDTAVINPPFGTKKKG 130 (185)
T ss_pred CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccC---CeEeeEEecCCCCccccc
Confidence 44556666666788999999999887 43 47888888766554 399999999999986544
No 74
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=84.13 E-value=1.6 Score=32.60 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.8
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||++++-
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 57899999999999998764
No 75
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=81.57 E-value=2 Score=37.99 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
..+|..+.++|+|||++++.-
T Consensus 162 ~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 162 LKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHHHHHHcCcCcEEEEEE
Confidence 567899999999999998873
No 76
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=81.37 E-value=0.79 Score=39.27 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=25.8
Q ss_pred EEEecCCHHHHHHHHHHHHHHH-HH--HHHhhcCCCCCCCCCcccccceeEeCCCCc
Q 039679 47 HFVNLPSEDIARSIANRIWITN-AY--WFAKADNNLPPWRPGLKEVFDAIICDPPYG 100 (230)
Q Consensus 47 ~vV~lp~e~~a~~l~~Rsil~~-I~--~ll~~D~t~~p~r~~l~e~~DaIvtDPPYG 100 (230)
.++-++.+..|..++++.+-.. +- .++..|.... +.. ..+.||.|++||||.
T Consensus 78 ~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~~-~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 78 GATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LAQ-PGTPHNVVFVDPPFR 132 (199)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hhh-cCCCceEEEECCCCC
Confidence 3444555566666776664322 20 0112222110 100 113699999999993
No 77
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.73 E-value=1.1 Score=31.67 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhccccCCEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf 158 (230)
-...+++.+.++|+|||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 356789999999999999986
No 78
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=79.60 E-value=2.9 Score=35.29 Aligned_cols=13 Identities=31% Similarity=0.444 Sum_probs=11.5
Q ss_pred ccceeEeCCCCcc
Q 039679 89 VFDAIICDPPYGV 101 (230)
Q Consensus 89 ~~DaIvtDPPYGi 101 (230)
.+|.|+.||||+.
T Consensus 121 ~~dvv~~DPPy~~ 133 (189)
T TIGR00095 121 FDNVIYLDPPFFN 133 (189)
T ss_pred CceEEEECcCCCC
Confidence 5899999999974
No 79
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=79.20 E-value=2.2 Score=40.14 Aligned_cols=60 Identities=28% Similarity=0.322 Sum_probs=40.1
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCC-CcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTA-PYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~-~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..||=|.||=|=--=-..|+...-...-+. +. .+.|-.+-..||..+.++|++||+|||-
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~------------~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 235 LKFDRVLVDVPCSGDGTLRKNPNIWKEGWK------------TQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred hhcceeEEecccCCCcccccCchHhhhhhh------------hhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 389999999886443222332110000000 12 3678888899999999999999999997
No 80
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=79.16 E-value=2.6 Score=39.23 Aligned_cols=63 Identities=22% Similarity=0.166 Sum_probs=38.2
Q ss_pred HHHHHHhhccccCCEEEEEEeeccCC-------------CC---CCCccccCCceeEeeEEEecCCceeE----------
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVLRED-------------ST---RNPFPEHLCFKLVASSEQILSSRYSR---------- 194 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~~~~-------------~~---~~~lp~h~gl~li~~~~Q~~~~k~sR---------- 194 (230)
..|+.+.++|++||++++.-|...+. .. ...+-+..||..+.. +.+...|-|
T Consensus 196 ~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i--~~i~~~~~~~~~~~~~~~~ 273 (340)
T PLN02490 196 RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL--KRIGPKWYRGVRRHGLIMG 273 (340)
T ss_pred HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE--EEcChhhccccccccceee
Confidence 47899999999999998875542110 00 012333568988764 444444433
Q ss_pred EEEEEEEcCCC
Q 039679 195 VLLTMVKIGLY 205 (230)
Q Consensus 195 ~Lit~~K~~~~ 205 (230)
.-|+..|....
T Consensus 274 ~~v~~~k~~~~ 284 (340)
T PLN02490 274 CSVTGVKPASG 284 (340)
T ss_pred EEEEEeccccC
Confidence 45677775544
No 81
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=78.91 E-value=3.7 Score=34.56 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=9.0
Q ss_pred eeEeCCCCcc
Q 039679 92 AIICDPPYGV 101 (230)
Q Consensus 92 aIvtDPPYGi 101 (230)
+|-|+||||.
T Consensus 64 ~vf~NPPYS~ 73 (166)
T TIGR01712 64 AVWLNPPYSR 73 (166)
T ss_pred eEEecCCCCc
Confidence 7999999984
No 82
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=77.69 E-value=3.2 Score=35.21 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+|+.+.++|++||++++.-+
T Consensus 131 ~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 131 MQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred HHHHHHHHHHcCcCeEEEEEEC
Confidence 4678899999999999987644
No 83
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.75 E-value=1.2 Score=38.20 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=23.5
Q ss_pred HhhcCCCCC-CCCCcccccceeEeCCCCcccccccc
Q 039679 73 AKADNNLPP-WRPGLKEVFDAIICDPPYGVRASGRK 107 (230)
Q Consensus 73 l~~D~t~~p-~r~~l~e~~DaIvtDPPYGiRa~~rk 107 (230)
++-|-+.+- +...+++.||.||.||||=--+...|
T Consensus 118 vfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~K 153 (217)
T KOG3350|consen 118 VFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAK 153 (217)
T ss_pred EEeccCCCCCCHHHHHhcccEEEeCCccccchhhhh
Confidence 334444432 44456778999999999987775543
No 84
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=75.58 E-value=3.2 Score=35.88 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|++||+++|..+..
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCC
Confidence 467888899999999999986653
No 85
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=73.42 E-value=2.4 Score=34.07 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=12.7
Q ss_pred HHHHHhhccccCCEEE
Q 039679 142 LLDLAGRILVMGGRLV 157 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLv 157 (230)
-+.+|..+|+.||.+|
T Consensus 20 A~~fA~all~~gh~~v 35 (126)
T COG1553 20 ALRFAEALLEQGHELV 35 (126)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 4678888888888874
No 86
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=72.89 E-value=3.5 Score=37.83 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEe
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
+.+..+|+.|..+|++||||+++-=
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISf 241 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISF 241 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3567889999999999999998833
No 87
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=71.97 E-value=7.1 Score=32.97 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++|+.+.++|+|||++++..+..
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 4678999999999999999986544
No 88
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=70.27 E-value=4.5 Score=37.30 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+-+...|..|-.+|++|||||++-=..
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 456788999999999999999985444
No 89
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=70.01 E-value=8.3 Score=33.05 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=28.1
Q ss_pred CCEEEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCC-CCcccccceeEeCCCCc
Q 039679 44 SPFHFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWR-PGLKEVFDAIICDPPYG 100 (230)
Q Consensus 44 ~pf~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r-~~l~e~~DaIvtDPPYG 100 (230)
+....||. +..|.+++++.+=.= .- .+++.|+. .-++ .+.++.||.|--||||+
T Consensus 67 ~~~~~vE~--~~~a~~~l~~N~~~l~~~~~~~~~~~da~-~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 67 ARVVFVEK--DRKAVKILKENLKALGLEGEARVLRNDAL-RALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ceEEEEec--CHHHHHHHHHHHHHhCCccceEEEeecHH-HHHHhcCCCCcccEEEeCCCCc
Confidence 44555664 455666665552111 10 13445555 1111 11223599999999999
No 90
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=69.65 E-value=4.6 Score=36.86 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhccccCCEEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+.+..+|..|..+|++||||+++-
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~vis 236 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVIS 236 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEe
Confidence 346788999999999999999883
No 91
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=68.55 E-value=8.2 Score=33.75 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=17.5
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||++++.
T Consensus 163 ~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 163 ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 45788999999999999885
No 92
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=68.09 E-value=5.3 Score=35.24 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHhhccccCCEEEEEEeec
Q 039679 143 LDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 143 L~~Aa~~L~~gGRLvf~lP~~ 163 (230)
++...++|+|||+++++.|..
T Consensus 164 ~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 164 AEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred HHHHHhhccCCCEEEEEeCCC
Confidence 345678999999999998864
No 93
>PLN02366 spermidine synthase
Probab=68.01 E-value=6.7 Score=35.89 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.6
Q ss_pred HHHHHHHhhccccCCEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf 158 (230)
.++++.+.++|++||.+|.
T Consensus 186 ~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 186 KPFFESVARALRPGGVVCT 204 (308)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 5678899999999999975
No 94
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=67.37 E-value=3.5 Score=34.50 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=25.8
Q ss_pred cceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 90 FDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 90 ~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+|+|..|||+|=..=.+... .. . .. .-.|+++.+++.. +.++ ...+++.||-..+-.
T Consensus 70 ~D~vFlSPPWGGp~Y~~~~~------fd----L-~~---~~~p~~~~~l~~~----~~~~---t~nv~l~LPRn~dl~ 126 (163)
T PF09445_consen 70 FDVVFLSPPWGGPSYSKKDV------FD----L-EK---SMQPFNLEDLLKA----ARKI---TPNVVLFLPRNSDLN 126 (163)
T ss_dssp -SEEEE---BSSGGGGGSSS------B-----T-TT---SSSS--HHHHHHH----HHHH----S-EEEEEETTB-HH
T ss_pred ccEEEECCCCCCccccccCc------cC----H-HH---ccCCCCHHHHHHH----HHhh---CCCEEEEeCCCCCHH
Confidence 79999999999533332110 00 0 00 1245666655554 3332 367899999876544
No 95
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=66.25 E-value=4.4 Score=37.31 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEe
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
+-+..+|..|..+|++||||+++-=
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISF 242 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISF 242 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 4567889999999999999999843
No 96
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=65.32 E-value=10 Score=33.66 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHHhhccccCCEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
...++....++|+|||.|++=
T Consensus 221 ~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 221 QRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHHHHHhCCCeEEEEE
Confidence 456889999999999999753
No 97
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.26 E-value=4.8 Score=34.79 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCEEEEecCCHHHHHHHHHHHHHHH--HHHHHhhcCCCCCCCCCcccccceeEeCCCCccc
Q 039679 44 SPFHFVNLPSEDIARSIANRIWITN--AYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVR 102 (230)
Q Consensus 44 ~pf~vV~lp~e~~a~~l~~Rsil~~--I~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiR 102 (230)
.+.-|+-.+-|..|..++++.+--- =...+.+|++.-. +-+|-+|+|||+|.+
T Consensus 67 Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~ 121 (198)
T COG2263 67 GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC------CccceEEECCCCccc
Confidence 3444544444556777777666521 0114666666543 267899999999998
No 98
>PLN02244 tocopherol O-methyltransferase
Probab=64.20 E-value=14 Score=33.86 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..++..+.++|+|||++++.-.
T Consensus 203 ~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 203 RKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHHHcCCCcEEEEEEe
Confidence 3578888999999999988644
No 99
>PRK04457 spermidine synthase; Provisional
Probab=64.14 E-value=10 Score=33.61 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.++++.+.++|++||.+++-+
T Consensus 157 ~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEc
Confidence 678999999999999999853
No 100
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=63.72 E-value=6.4 Score=36.36 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=32.6
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHH-HhhccccCCEEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL-AGRILVMGGRLVYFY 160 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~-Aa~~L~~gGRLvf~l 160 (230)
..+|.||-|||+-...-.| +..|++..-+.+|++. ..+++.+.|-++||.
T Consensus 183 llpdlIIiDPPW~NKSVkR-----------------------s~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~Wc 233 (366)
T KOG2356|consen 183 LLPDLIIIDPPWFNKSVKR-----------------------SRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWC 233 (366)
T ss_pred hcCCeEEeCCCCCCccccc-----------------------ccceecccchhhhhcCCchhhcCCCceEEEEE
Confidence 3679999999998722222 2356665555555543 345677888899994
No 101
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=63.70 E-value=10 Score=32.07 Aligned_cols=14 Identities=43% Similarity=0.280 Sum_probs=11.0
Q ss_pred HhhccccCCEEEEE
Q 039679 146 AGRILVMGGRLVYF 159 (230)
Q Consensus 146 Aa~~L~~gGRLvf~ 159 (230)
..+.|++||+|++-
T Consensus 159 l~~~L~~gG~lvi~ 172 (205)
T PRK13944 159 LVRQLKDGGVLVIP 172 (205)
T ss_pred HHHhcCcCcEEEEE
Confidence 45789999999664
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=63.44 E-value=9.4 Score=33.29 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVL 196 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~L 196 (230)
+.+..++..+.++|++||++++--................||.++....+ +.|...+
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~---~~W~~~~ 246 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER---GEWVALV 246 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe---CCEEEEE
Confidence 55678899999999999999886333222211112334558888765432 3466543
No 103
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=62.95 E-value=5.7 Score=35.68 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.4
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
.+.|+.+.+.|++||++|+..|+.+
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 3578899999999999999999985
No 104
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=62.34 E-value=9.1 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|++||++++..|..
T Consensus 115 ~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 115 SQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCc
Confidence 457889999999999999887654
No 105
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=61.41 E-value=2.9 Score=35.09 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc-CCCCCCCccccCCceeEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR-EDSTRNPFPEHLCFKLVA 182 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~-~~~~~~~lp~h~gl~li~ 182 (230)
..++..++++|++||++.|...... .+.....+..++||..+.
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecc
Confidence 6789999999999999988855432 111123455677777654
No 106
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=60.01 E-value=12 Score=31.10 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEEeeccCCC---CCCCccccCCceeEeeE
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLREDS---TRNPFPEHLCFKLVASS 184 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~---~~~~lp~h~gl~li~~~ 184 (230)
-.+++.+++..|.++|+++|++.+-+-.... + ....++.+.||.|+...
T Consensus 100 nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-y~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 100 NRELLRGFFKSASQLLKPDGEIHVTLKDGQP-YDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-CccccHHHHHHhcCCEEEEEe
Confidence 4679999999999999999999887765432 2 23477888898887764
No 107
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=59.39 E-value=11 Score=31.95 Aligned_cols=14 Identities=36% Similarity=0.159 Sum_probs=11.2
Q ss_pred HhhccccCCEEEEE
Q 039679 146 AGRILVMGGRLVYF 159 (230)
Q Consensus 146 Aa~~L~~gGRLvf~ 159 (230)
..+.|++||+|++.
T Consensus 163 ~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 163 LIDQLKEGGILVMP 176 (215)
T ss_pred HHHhcCcCcEEEEE
Confidence 45679999998864
No 108
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=59.07 E-value=9 Score=28.17 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhccccCCEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+-...+|+.+.++|+|||++++-
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEE
Confidence 45677899999999999999874
No 109
>PRK04266 fibrillarin; Provisional
Probab=59.03 E-value=9.8 Score=33.13 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=20.1
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|+.+.++|+|||++++.+|..
T Consensus 156 ~~~L~~~~r~LKpGG~lvI~v~~~ 179 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLLAIKAR 179 (226)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecc
Confidence 346889999999999999987753
No 110
>PRK06922 hypothetical protein; Provisional
Probab=58.70 E-value=10 Score=38.56 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhccccCCEEEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
-+..+|..+.++|+|||++++.=
T Consensus 515 dl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 515 VIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEe
Confidence 45677889999999999998863
No 111
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=58.29 E-value=8 Score=28.10 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhccccCCEE
Q 039679 137 ECVHDLLDLAGRILVMGGRL 156 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRL 156 (230)
+-...++..+.++|+|||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 34568899999999999986
No 112
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=56.92 E-value=10 Score=29.52 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.3
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|+...++|+|||++++..|..
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 5678899999999999999999975
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=56.48 E-value=11 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHHHHHHHhhccccCCEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+..++..+.++|++||++++.
T Consensus 121 ~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 121 VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 467899999999999999885
No 114
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=56.39 E-value=15 Score=32.29 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.++++.++++|++||-++.+.+..
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEET
T ss_pred HHHHHHHHhhcCCCcEEEEEccCc
Confidence 468899999999999999998544
No 115
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=55.80 E-value=5.8 Score=32.30 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVR 102 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiR 102 (230)
++..|....++... .+|.|++||||.+.
T Consensus 63 ii~~D~~~~~~~~~---~~d~vi~n~Py~~~ 90 (169)
T smart00650 63 VIHGDALKFDLPKL---QPYKVVGNLPYNIS 90 (169)
T ss_pred EEECchhcCCcccc---CCCEEEECCCcccH
Confidence 35566655554432 58999999999873
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=55.49 E-value=22 Score=33.86 Aligned_cols=24 Identities=17% Similarity=0.049 Sum_probs=19.8
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.++|+|||++++--+..
T Consensus 349 ~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 349 PALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred HHHHHHHHHHcCCCeEEEEEEecc
Confidence 467889999999999998876543
No 117
>PRK07402 precorrin-6B methylase; Provisional
Probab=55.08 E-value=13 Score=30.90 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.7
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.++++.+.++|++||++++..+..
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeecH
Confidence 4678899999999999999998765
No 118
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=54.71 E-value=11 Score=32.37 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=20.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+..+|+.+...|++|||||.=.=+-
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 5778999999999999998754443
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=54.44 E-value=15 Score=31.89 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHHHHHHhhccccCCEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf 158 (230)
+.++++.+.++|++||.+++
T Consensus 157 y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 157 YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHHHhcCCCeEEEE
Confidence 35678888999999999885
No 120
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=40 Score=26.29 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHcCC-CccccccCCCCCCCCCCEEEEecC-CHHHHHHHHHHHHHHH
Q 039679 15 RKPEVESLAYLFGV-NDALEWKLPKHHHPDSPFHFVNLP-SEDIARSIANRIWITN 68 (230)
Q Consensus 15 r~~El~sl~~l~gi-~~~~~~~~~~~~~~~~pf~vV~lp-~e~~a~~l~~Rsil~~ 68 (230)
..||+.+++.-.|| +|++= . +....-=|-+++-. .+.+..+++++-++-|
T Consensus 25 vWPE~~a~lk~agi~nYSIf-L---de~~n~lFgy~E~~d~~a~m~~~a~~ev~qk 76 (105)
T COG3254 25 VWPELLALLKEAGIRNYSIF-L---DEEENLLFGYWEYEDFEADMAKMAETEVCQK 76 (105)
T ss_pred ccHHHHHHHHHcCCceeEEE-e---cCCcccEEEEEEEcChHHHHHHHhCCHHHHH
Confidence 57999999999999 44441 1 01113447777877 5668889999999998
No 121
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=53.03 E-value=6.6 Score=34.90 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.4
Q ss_pred HHHHHhhcc-ccCCEEEEEEeecc
Q 039679 142 LLDLAGRIL-VMGGRLVYFYPVLR 164 (230)
Q Consensus 142 LL~~Aa~~L-~~gGRLvf~lP~~~ 164 (230)
-+..|.+.| ++||++|++.|+.+
T Consensus 127 ~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 127 AIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp GHHHHHHHE-EEEEEEEEEESSHH
T ss_pred HHHHHHHHHhcCCceEEEECCCHH
Confidence 477888999 99999999999985
No 122
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=53.02 E-value=19 Score=30.52 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+++.++.|..+.=..|||.|+.|..
T Consensus 108 ~~~~~~~a~~I~fi~GRl~F~~p~~ 132 (181)
T PF05869_consen 108 FEDALENADEIRFIRGRLKFINPVT 132 (181)
T ss_pred HHHHHhcCCEEEEecCceeeccCCC
Confidence 4455667887777789999999944
No 123
>PLN02823 spermine synthase
Probab=52.05 E-value=21 Score=33.13 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHH-HHhhccccCCEEEEEE
Q 039679 141 DLLD-LAGRILVMGGRLVYFY 160 (230)
Q Consensus 141 dLL~-~Aa~~L~~gGRLvf~l 160 (230)
++++ .+.+.|++||-++...
T Consensus 200 eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 200 SFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred HHHHHHHHHhcCCCcEEEEec
Confidence 4666 7789999999988764
No 124
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=50.31 E-value=18 Score=30.27 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.++++.+.++|++||++++-.++.
T Consensus 124 ~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 124 LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 3567889999999999998755544
No 125
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=48.53 E-value=9.7 Score=36.24 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=11.0
Q ss_pred ccceeEeCCCCc
Q 039679 89 VFDAIICDPPYG 100 (230)
Q Consensus 89 ~~DaIvtDPPYG 100 (230)
.||+||+||||.
T Consensus 367 ~fD~Vi~dPPr~ 378 (443)
T PRK13168 367 GFDKVLLDPPRA 378 (443)
T ss_pred CCCEEEECcCCc
Confidence 699999999995
No 126
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=48.03 E-value=24 Score=29.63 Aligned_cols=17 Identities=29% Similarity=0.032 Sum_probs=13.1
Q ss_pred HHhhccccCCEEEEEEe
Q 039679 145 LAGRILVMGGRLVYFYP 161 (230)
Q Consensus 145 ~Aa~~L~~gGRLvf~lP 161 (230)
...+.|++||++++-..
T Consensus 160 ~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 160 ALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHhcCCCcEEEEEEc
Confidence 34578999999987654
No 127
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=47.57 E-value=7.8 Score=37.33 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCC----CccccCCceeEeeE
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRN----PFPEHLCFKLVASS 184 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~----~lp~h~gl~li~~~ 184 (230)
+.-+-..||..|-+++++||.|||--=+...+..+. .+-++|+++|+-..
T Consensus 346 ~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~ 399 (460)
T KOG1122|consen 346 YAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTG 399 (460)
T ss_pred hHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEecccc
Confidence 445678999999999999999999643333222232 44567888887665
No 128
>PRK00536 speE spermidine synthase; Provisional
Probab=47.30 E-value=25 Score=31.59 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=9.5
Q ss_pred cccceeEeCCCC
Q 039679 88 EVFDAIICDPPY 99 (230)
Q Consensus 88 e~~DaIvtDPPY 99 (230)
+.||.||+|-.|
T Consensus 138 ~~fDVIIvDs~~ 149 (262)
T PRK00536 138 KKYDLIICLQEP 149 (262)
T ss_pred CcCCEEEEcCCC
Confidence 589999999443
No 129
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=46.56 E-value=25 Score=33.14 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=15.2
Q ss_pred HHHHHHhhccccCCEEEEE
Q 039679 141 DLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~ 159 (230)
.+++.|.+.++.||-|.+-
T Consensus 128 ~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 128 PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHHHHHhcccCCEEEEE
Confidence 4788888889988888665
No 130
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=46.09 E-value=18 Score=31.43 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=19.3
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..++..+.++|+|||++++.+|.
T Consensus 106 ~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 106 ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCC
Confidence 45788889999999999987764
No 131
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=45.44 E-value=12 Score=33.81 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=11.6
Q ss_pred ccceeEeCCCCcccccc
Q 039679 89 VFDAIICDPPYGVRASG 105 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~ 105 (230)
.||+||+||| |+|.
T Consensus 240 ~~D~Vv~dPP---r~G~ 253 (315)
T PRK03522 240 VPDLVLVNPP---RRGI 253 (315)
T ss_pred CCeEEEECCC---CCCc
Confidence 6899999999 5554
No 132
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=44.59 E-value=24 Score=31.15 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=20.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.++|+|||++++.-+..
T Consensus 136 ~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 136 KKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred HHHHHHHHHHcCCCcEEEEEEecc
Confidence 568899999999999999876644
No 133
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=43.14 E-value=46 Score=29.57 Aligned_cols=27 Identities=7% Similarity=0.002 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
-..+++..+.++|++||++.++.+...
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v~~~~~ 227 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIVCAMDT 227 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 456789999999999999877766543
No 134
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=42.76 E-value=32 Score=32.43 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=25.8
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH--HHHhhcCCCCCCCCCcccccceeEeCCCCcc
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY--WFAKADNNLPPWRPGLKEVFDAIICDPPYGV 101 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~--~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGi 101 (230)
.+.+|+ +..|.+++++.+-.. +- .....|...- +.. .+.||.|+.||| |.
T Consensus 84 V~a~Di--n~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l~~--~~~fD~V~lDP~-Gs 136 (382)
T PRK04338 84 VTLNDI--NPDAVELIKKNLELNGLENEKVFNKDANAL-LHE--ERKFDVVDIDPF-GS 136 (382)
T ss_pred EEEEeC--CHHHHHHHHHHHHHhCCCceEEEhhhHHHH-Hhh--cCCCCEEEECCC-CC
Confidence 444454 556777777776433 21 1122222110 110 136999999997 43
No 135
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=42.04 E-value=49 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHcCCCcccc-ccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 13 DYRKPEVESLAYLFGVNDALE-WKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 13 ~fr~~El~sl~~l~gi~~~~~-~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
.=|...+.++++-.|..+.-. |. --+++-..+++.|+++.|.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t----~G~yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWT----LGEYDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEe----cCCCCEEEEEEcCCHHHHHHHH
Confidence 347788999999999954211 22 2337788999999999776554
No 136
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=41.80 E-value=25 Score=30.48 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..++..+.++|+|||++++..+.
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 129 KSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHHHHHHHHcCCCeEEEEEEEC
Confidence 35788999999999999876443
No 137
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=41.53 E-value=56 Score=29.09 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=27.1
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLRED 166 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~ 166 (230)
..|.||||=|||-..+=...+ -.+=+.++|+.-+.+| |++-+|.+ +..+.
T Consensus 168 ~~diViTDlPYG~~t~W~g~~-------------------------~~~p~~~ml~~l~~vL-p~~sVV~v--~~k~~ 217 (246)
T PF11599_consen 168 TPDIVITDLPYGEMTSWQGEG-------------------------SGGPVAQMLNSLAPVL-PERSVVAV--SDKGR 217 (246)
T ss_dssp --SEEEEE--CCCSSSTTS----------------------------HHHHHHHHHHHHCCS--TT-EEEE--EESSS
T ss_pred CCCEEEecCCCcccccccCCC-------------------------CCCcHHHHHHHHHhhC-CCCcEEEE--ecCCc
Confidence 369999999999866542211 1122467788888999 55544444 55444
No 138
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=40.93 E-value=29 Score=28.98 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhccccCCEEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
....+++.+.++|+|||++.++
T Consensus 111 ~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 111 RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 3467899999999999995443
No 139
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=40.85 E-value=14 Score=34.36 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=10.0
Q ss_pred ccceeEeCCCC
Q 039679 89 VFDAIICDPPY 99 (230)
Q Consensus 89 ~~DaIvtDPPY 99 (230)
.||.||.||||
T Consensus 300 ~~D~vi~DPPr 310 (374)
T TIGR02085 300 APELVLVNPPR 310 (374)
T ss_pred CCCEEEECCCC
Confidence 58999999996
No 140
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=40.01 E-value=35 Score=29.61 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 136 SECVHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 136 ~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
-++...|+..|+++|++||.|+.-=|...+
T Consensus 117 ~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 117 WSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 456689999999999999999999997764
No 141
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=39.98 E-value=22 Score=31.80 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=17.4
Q ss_pred HHHHHHHHhhccccCCEEE
Q 039679 139 VHDLLDLAGRILVMGGRLV 157 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLv 157 (230)
+..+++.+.++|+|||+++
T Consensus 145 ~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 145 YPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp HHHHHHHHHHHSETTEEEE
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 5788999999999999996
No 142
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=39.72 E-value=27 Score=31.77 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+.-|+.|-++||||||+..+
T Consensus 194 ~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 194 QKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 45689999999999998543
No 143
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=39.13 E-value=30 Score=28.54 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.+.++|++||++++.-.
T Consensus 123 ~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 123 QKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred HHHHHHHHHHcCCCcEEEEEEe
Confidence 4678999999999999987643
No 144
>PLN02476 O-methyltransferase
Probab=38.58 E-value=37 Score=30.76 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=16.2
Q ss_pred HHHHHHHHhhccccCCEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf 158 (230)
+.+.++.+.++|++||.+++
T Consensus 207 Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 207 YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 46678888899999999864
No 145
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=37.65 E-value=36 Score=30.36 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhccccCCEEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+....+|..+.+.|+||||+++.=
T Consensus 231 ~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 344668999999999999998873
No 146
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=37.46 E-value=30 Score=29.03 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+++.+.++|+|||++++.-+.
T Consensus 84 ~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 84 MDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHHHHHHHcCCCCEEEEEEcc
Confidence 46888999999999999887553
No 147
>PRK08317 hypothetical protein; Provisional
Probab=36.20 E-value=33 Score=28.36 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.3
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..++..+.++|++||++++.-|.
T Consensus 104 ~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 104 ARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred HHHHHHHHHHhcCCcEEEEEecC
Confidence 45788889999999999987664
No 148
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=35.89 E-value=57 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhccccCCEEEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
....+++.++++|+|||++.++.
T Consensus 112 ~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 112 TIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEE
Confidence 35678999999999999965543
No 149
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=35.67 E-value=49 Score=30.33 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+.|..++++|++||+|++-....
T Consensus 205 ~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 205 LEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HHHHHHHHHhcCCCCEEEEEEEEe
Confidence 467899999999999999865443
No 150
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=35.35 E-value=31 Score=30.86 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEe
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
+.+...+....++|+|||.|++.-=
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4578889999999999999988744
No 151
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=35.00 E-value=37 Score=29.24 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.++|++||++++-.|..
T Consensus 110 ~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 110 LELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEECCCC
Confidence 457888899999999999987653
No 152
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=34.39 E-value=74 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
...+...|.+.-.+. ++|-.++|+|.-.
T Consensus 141 y~~v~~~l~~a~kR~--~~G~~~iWYPi~~ 168 (245)
T PF04378_consen 141 YQRVVDALAKALKRW--PTGVYAIWYPIKD 168 (245)
T ss_dssp HHHHHHHHHHHHHH---TTSEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhc--CCcEEEEEeeccc
Confidence 344444444333333 4699999999864
No 153
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=33.74 E-value=49 Score=26.90 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHHHhhccccCCEEEEEE
Q 039679 133 YCLSECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 133 y~~~~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+...++...-|.+|.++|++||.++.-+
T Consensus 112 ~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 112 FISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 3444666666779999999999887764
No 154
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=33.08 E-value=33 Score=30.46 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=49.7
Q ss_pred CCCEEEEe-cCCHHHHHHHHHHHHHHHHH---H-HHhhcCCCCC-CCCCcccccceeEeCCCCcccccccccccccCCCC
Q 039679 43 DSPFHFVN-LPSEDIARSIANRIWITNAY---W-FAKADNNLPP-WRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPY 116 (230)
Q Consensus 43 ~~pf~vV~-lp~e~~a~~l~~Rsil~~I~---~-ll~~D~t~~p-~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~ 116 (230)
.+|.+-|. ++..+..++++..|+--+-+ . .++++..+-| +.++ ++|+|||-- +.
T Consensus 96 ~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~---s~DtVV~Tl--vL--------------- 155 (252)
T KOG4300|consen 96 WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADG---SYDTVVCTL--VL--------------- 155 (252)
T ss_pred CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccC---CeeeEEEEE--EE---------------
Confidence 44655554 55555677777666654411 1 3455555544 3332 777777621 11
Q ss_pred CCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 117 TVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 117 ~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
.|..+.. .-|+.-.++|+||||+-||=-.. +++
T Consensus 156 ----------------CSve~~~-k~L~e~~rlLRpgG~iifiEHva-~~y 188 (252)
T KOG4300|consen 156 ----------------CSVEDPV-KQLNEVRRLLRPGGRIIFIEHVA-GEY 188 (252)
T ss_pred ----------------eccCCHH-HHHHHHHHhcCCCcEEEEEeccc-ccc
Confidence 1222222 35778899999999999985554 444
No 155
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=31.99 E-value=41 Score=29.65 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=28.3
Q ss_pred eeEEEEEEEEcCCCcHHHHHHHHhhhhHhHHhhhhhhc
Q 039679 192 YSRVLLTMVKIGLYTEEIAETARRNHLEFRENHLKWLE 229 (230)
Q Consensus 192 ~sR~Lit~~K~~~~~~~~~~~~~~~~~~fr~~~~~~~~ 229 (230)
..| |+..+|++| .+.+.+.+..++++|=|||.+=++
T Consensus 31 ~~r-lvaVSKtKP-a~~i~~~Y~~GqR~FGENYVQEl~ 66 (244)
T KOG3157|consen 31 AVR-LVAVSKTKP-ASLIIEAYDAGQRHFGENYVQELI 66 (244)
T ss_pred ceE-EEEeecCCc-HHHHHHHHHcCcChhhHHHHHHHH
Confidence 455 888999987 445556678899999999998654
No 156
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=31.54 E-value=43 Score=29.02 Aligned_cols=22 Identities=36% Similarity=0.238 Sum_probs=19.1
Q ss_pred HHHHHHHHhhccccCCEEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
...+++...+.|+|||++++.=
T Consensus 143 ~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 143 RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 3578999999999999998873
No 157
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=31.18 E-value=25 Score=31.82 Aligned_cols=11 Identities=55% Similarity=1.144 Sum_probs=9.5
Q ss_pred ceeEeCCCCcc
Q 039679 91 DAIICDPPYGV 101 (230)
Q Consensus 91 DaIvtDPPYGi 101 (230)
|.|-|||||=.
T Consensus 176 dfvY~DPPY~~ 186 (274)
T COG0338 176 DFVYCDPPYLP 186 (274)
T ss_pred cEEEeCCCCCc
Confidence 67999999965
No 158
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=30.35 E-value=31 Score=28.18 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=17.6
Q ss_pred HHHHHHHhhccccCCEEEEE-Eeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYF-YPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~-lP~~~ 164 (230)
-.-|+.|.++|++||+++++ +|-+.
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 34578899999999999554 55444
No 159
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=29.42 E-value=28 Score=32.28 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.6
Q ss_pred ccceeEeCCCCcccccc
Q 039679 89 VFDAIICDPPYGVRASG 105 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~ 105 (230)
.||.||-|||| +|.
T Consensus 288 ~~D~v~lDPPR---~G~ 301 (362)
T PRK05031 288 NFSTIFVDPPR---AGL 301 (362)
T ss_pred CCCEEEECCCC---CCC
Confidence 48999999995 565
No 160
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=29.26 E-value=54 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 136 SECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 136 ~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.+.+..++..+.++|++||++++--..
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 456678899999999999999886543
No 161
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=28.40 E-value=82 Score=28.77 Aligned_cols=21 Identities=38% Similarity=0.311 Sum_probs=18.0
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.++|..+.+.|++||++++--
T Consensus 206 ~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 206 LDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred HHHHHHHHHhcCCCcEEEEEE
Confidence 567899999999999998753
No 162
>smart00362 RRM_2 RNA recognition motif.
Probab=27.88 E-value=1.6e+02 Score=18.46 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=36.6
Q ss_pred ehhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 6 VFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 6 ~fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
+...-+.+....||..++.-+|--..+.+. .......++..|++.+.+.|.+.++
T Consensus 3 ~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~--~~~~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFSKFGPIESVKIP--KDTGKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred EEcCCCCcCCHHHHHHHHHhcCCEEEEEEe--cCCCCCCceEEEEeCCHHHHHHHHH
Confidence 344556677889999999988852233222 1112346899999998888877654
No 163
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=27.58 E-value=24 Score=31.60 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.8
Q ss_pred cccceeEeCCCCccccccc
Q 039679 88 EVFDAIICDPPYGVRASGR 106 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~r 106 (230)
..||.||||-|=||-.|.+
T Consensus 112 ~~fDyIi~DsPAGIE~G~~ 130 (272)
T COG2894 112 MDFDYIIIDSPAGIEQGFK 130 (272)
T ss_pred cCCCEEEecCcchHHHHHH
Confidence 4799999999999988874
No 164
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=27.08 E-value=69 Score=23.20 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCCCEEEEecCCHHHHHHHHHHHHH
Q 039679 42 PDSPFHFVNLPSEDIARSIANRIWI 66 (230)
Q Consensus 42 ~~~pf~vV~lp~e~~a~~l~~Rsil 66 (230)
...-||+.+.||++.+++.++|..+
T Consensus 45 ~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 45 DGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred CCeEEEEEECCCHHHHHHHHHHcCC
Confidence 3567999999999999999998643
No 165
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=26.85 E-value=37 Score=29.62 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhccccCCEEEEEE-eeccCCCCCCCcc-ccCCceeEeeEEEecCCc-eeEEEEEEEEcC
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFY-PVLREDSTRNPFP-EHLCFKLVASSEQILSSR-YSRVLLTMVKIG 203 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~l-P~~~~~~~~~~lp-~h~gl~li~~~~Q~~~~k-~sR~Lit~~K~~ 203 (230)
=+.+|++.+..+|++||+++++. ....++..+.+.+ ...++.++......+... -.|.|+...|.+
T Consensus 146 ~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 146 SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence 36789999999999999976443 3333333222222 123556666655555433 458888887754
No 166
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=26.70 E-value=66 Score=27.14 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=18.9
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.++|+.+.++|++||++++-.|
T Consensus 131 ~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 131 ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred HHHHHHHHHHcCCCcEEEEEec
Confidence 4678999999999999988765
No 167
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=26.04 E-value=52 Score=28.54 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhccccCCEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
+-+..++......|+|||.||+=
T Consensus 123 ~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 123 EDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEE
Confidence 56788899999999999999986
No 168
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=25.63 E-value=77 Score=29.75 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=20.9
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.++++.+.++|+|||++++...+.
T Consensus 246 ~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 246 YRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccC
Confidence 4678999999999999998875543
No 169
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=25.47 E-value=39 Score=31.29 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=11.8
Q ss_pred ccceeEeCCCCcccccc
Q 039679 89 VFDAIICDPPYGVRASG 105 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~ 105 (230)
.||.|+.||| |+|.
T Consensus 279 ~~d~v~lDPP---R~G~ 292 (353)
T TIGR02143 279 NCSTIFVDPP---RAGL 292 (353)
T ss_pred CCCEEEECCC---CCCC
Confidence 3799999999 6776
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=25.46 E-value=43 Score=29.36 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
.++|+..++.|++||.|.|- |..+++
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~a--TD~~~y 169 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFA--TDNEEY 169 (227)
T ss_pred HHHHHHHHHHccCCCEEEEE--ecCHHH
Confidence 57899999999999999888 776666
No 171
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=25.20 E-value=62 Score=30.82 Aligned_cols=27 Identities=33% Similarity=0.256 Sum_probs=22.5
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
..++|+.++++|++||++.+. |...++
T Consensus 214 ~~~fL~e~~RvLkpGG~l~l~--TD~~~y 240 (390)
T PRK14121 214 SEDFLNEALRVLKPGGTLELR--TDSELY 240 (390)
T ss_pred HHHHHHHHHHHcCCCcEEEEE--EECHHH
Confidence 578999999999999999886 655444
No 172
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=25.06 E-value=67 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHHhhccccCCEEEEEEeeccCCCCC--------CCccc-cCCceeEeeE
Q 039679 144 DLAGRILVMGGRLVYFYPVLREDSTR--------NPFPE-HLCFKLVASS 184 (230)
Q Consensus 144 ~~Aa~~L~~gGRLvf~lP~~~~~~~~--------~~lp~-h~gl~li~~~ 184 (230)
....++|++||+|-+-+|.-.+.-.. ..+|. -+||+.|...
T Consensus 95 ~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 95 AKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred HHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 46779999999999999986432211 11221 3488888763
No 173
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=25.05 E-value=1.3e+02 Score=19.55 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=36.6
Q ss_pred ccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHHH
Q 039679 11 LLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANR 63 (230)
Q Consensus 11 h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~R 63 (230)
..+.-..||..+..-+|.-..+.... +.......+.+|+..+.++|.+.++.
T Consensus 7 p~~~t~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 7 PPDVTEEELRDFFSQFGKIESIKVMR-NSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp TTTSSHHHHHHHHHTTSTEEEEEEEE-ETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhhhcccccccc-cccccccceEEEEEcCHHHHHHHHHH
Confidence 45667789999999998743333221 12334678999999999999887653
No 174
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=24.95 E-value=33 Score=29.35 Aligned_cols=16 Identities=31% Similarity=0.438 Sum_probs=6.7
Q ss_pred cceeEeCCCCcccccc
Q 039679 90 FDAIICDPPYGVRASG 105 (230)
Q Consensus 90 ~DaIvtDPPYGiRa~~ 105 (230)
-|.|-+||||-.+.+.
T Consensus 178 ~d~vYlDPPY~~~~~~ 193 (260)
T PF02086_consen 178 NDFVYLDPPYYSTQYS 193 (260)
T ss_dssp E-EEEE--S-TT----
T ss_pred CeEEEEcCccccccCc
Confidence 4789999999775544
No 175
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=24.93 E-value=75 Score=27.12 Aligned_cols=24 Identities=25% Similarity=-0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...+++.+.++|+|||++++.=|.
T Consensus 140 ~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 140 RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecc
Confidence 357899999999999999887544
No 176
>PRK10148 hypothetical protein; Provisional
Probab=24.87 E-value=62 Score=26.06 Aligned_cols=53 Identities=8% Similarity=-0.037 Sum_probs=30.1
Q ss_pred CCEEEEecCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccceeEeCCCCcccccc
Q 039679 44 SPFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASG 105 (230)
Q Consensus 44 ~pf~vV~lp~e~~a~~l~~Rsil~~I~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~ 105 (230)
+-.+.|+.++.+.++++-+++.--= .+.......+|-. .-+.|+|| |||+=..
T Consensus 86 ~~~l~l~~~d~ee~~~~~~aLa~gg---~v~mpl~~~~wg~-----~~g~v~D~-fGi~W~l 138 (147)
T PRK10148 86 GFTLVLDTQDVEEGKRWFDNLAANG---KIEMAWQETFWAH-----GFGKVTDK-FGVPWMI 138 (147)
T ss_pred eEEEEEECCCHHHHHHHHHHhhCCC---EEEecchhcchhh-----ccEEEECC-CCCEEEE
Confidence 4466778878887777666432100 1222223334432 35899998 9996443
No 177
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=24.80 E-value=61 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccccCCEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf 158 (230)
+=+..++.....+|+|||+|++
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEE
Confidence 3466788899999999999865
No 178
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=24.70 E-value=53 Score=29.93 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.2
Q ss_pred HHHHHHHHhhccccCCEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf 158 (230)
.+++++...++|+|||+|..
T Consensus 174 p~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 174 PQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred HHHHHHHHHHHhCCCCceEe
Confidence 56789999999999999954
No 179
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=24.48 E-value=72 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 134 ~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+-.+....+|..++.+|+|||++..-.|-.
T Consensus 160 ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 160 ESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 347788899999999999999998888854
No 180
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=24.41 E-value=72 Score=26.49 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+|..+.++|++||++++.-.
T Consensus 138 ~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 138 DKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred HHHHHHHHHhccCCcEEEEEEe
Confidence 4578888999999999987643
No 181
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=23.94 E-value=1.1e+02 Score=28.24 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=12.9
Q ss_pred HhhccccCCEEEEEEee
Q 039679 146 AGRILVMGGRLVYFYPV 162 (230)
Q Consensus 146 Aa~~L~~gGRLvf~lP~ 162 (230)
..+.|++||++++....
T Consensus 166 ~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 166 WFTQLKEGGRVIVPINL 182 (322)
T ss_pred HHHhcCCCCEEEEEeCC
Confidence 45689999999876543
No 182
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=23.41 E-value=43 Score=29.65 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=9.3
Q ss_pred ceeEeCCCCcc
Q 039679 91 DAIICDPPYGV 101 (230)
Q Consensus 91 DaIvtDPPYGi 101 (230)
|.|=|||||-.
T Consensus 174 dfvYlDPPY~~ 184 (266)
T TIGR00571 174 SFVYCDPPYLP 184 (266)
T ss_pred CEEEECCCCCC
Confidence 67999999964
No 183
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=23.10 E-value=86 Score=20.89 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHHH
Q 039679 13 DYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANR 63 (230)
Q Consensus 13 ~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~R 63 (230)
+....+|..+..-+|.-..+.+..... ...+.+..|++.+.++|.+.++.
T Consensus 9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 9 STTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp T--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHH
Confidence 344556666666666322333321111 33578999999999999988765
No 184
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.09 E-value=58 Score=20.32 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHcCCCcc
Q 039679 13 DYRKPEVESLAYLFGVNDA 31 (230)
Q Consensus 13 ~fr~~El~sl~~l~gi~~~ 31 (230)
+.+.+||.+++.-.||+|.
T Consensus 3 sltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp T--SHHHHHHHHHHT---S
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 5688999999999999774
No 185
>PRK10904 DNA adenine methylase; Provisional
Probab=22.97 E-value=44 Score=29.73 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=9.7
Q ss_pred ceeEeCCCCccc
Q 039679 91 DAIICDPPYGVR 102 (230)
Q Consensus 91 DaIvtDPPYGiR 102 (230)
|.|=|||||=..
T Consensus 176 ~fvYlDPPY~~~ 187 (271)
T PRK10904 176 SVVYCDPPYAPL 187 (271)
T ss_pred cEEEECCCCCCC
Confidence 679999999653
No 186
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=22.63 E-value=60 Score=28.55 Aligned_cols=62 Identities=27% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCC--CCCccccCCceeEeeEEEecCCceeEEEEEEEEcCC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDST--RNPFPEHLCFKLVASSEQILSSRYSRVLLTMVKIGL 204 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~--~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K~~~ 204 (230)
+.|.|..|.|+|++||.|-..=-+.+=+.. +...-..-||++...-.+ .+ .=.++.+.|...
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~---n~-~F~~f~F~K~~~ 200 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES---NK-HFVLFEFKKIRK 200 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-----ST-TEEEEEEEE-SS
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC---CC-eEEEEEEEEcCc
Confidence 678999999999999999777554432221 223344669999875322 22 334667777664
No 187
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=22.44 E-value=79 Score=29.07 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=18.4
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+|...+++|+|||++++-.+
T Consensus 215 ~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 215 AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHHHHHHHHHcCCCcEEEEEEC
Confidence 4688889999999999987644
No 188
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=22.06 E-value=46 Score=29.15 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=18.3
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVR 102 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiR 102 (230)
+.+|....++. .||.||++|||.+.
T Consensus 80 i~~D~~~~~~~-----~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 80 IEGDALKVDLP-----EFNKVVSNLPYQIS 104 (258)
T ss_pred EEeccccCCch-----hceEEEEcCCcccC
Confidence 55666655543 46999999999984
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=22.00 E-value=72 Score=26.94 Aligned_cols=22 Identities=41% Similarity=0.683 Sum_probs=19.2
Q ss_pred HHHHHHHHhhccccCCEEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+..+++.+..+|++||++.++=
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEc
Confidence 4679999999999999998773
No 190
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=21.90 E-value=60 Score=27.45 Aligned_cols=41 Identities=29% Similarity=0.495 Sum_probs=29.2
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCC---CCccc-cCCceeEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTR---NPFPE-HLCFKLVA 182 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~---~~lp~-h~gl~li~ 182 (230)
.++|+..+++|++||++.|. |...++.+ ..+.. +++|..+.
T Consensus 113 ~~fl~~~~~~L~~gG~l~~~--TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 113 PEFLELLARVLKPGGELYFA--TDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEE--ES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred chHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 56899999999999999888 76655532 24445 67777765
No 191
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.76 E-value=48 Score=30.02 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCcccccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASG 105 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~ 105 (230)
++..|.....+ +.||.||+++||.|....
T Consensus 89 ii~~Dal~~~~-----~~~d~VvaNlPY~Istpi 117 (294)
T PTZ00338 89 VIEGDALKTEF-----PYFDVCVANVPYQISSPL 117 (294)
T ss_pred EEECCHhhhcc-----cccCEEEecCCcccCcHH
Confidence 34555544333 257999999999997655
No 192
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.54 E-value=65 Score=24.19 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=17.6
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
.+.++.+.++|++||+++++
T Consensus 69 ~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEEE
Confidence 35788899999999999988
No 193
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=21.30 E-value=1.1e+02 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 15 RKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 15 r~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
++|||-|++.+-|- ..+ ....-.+.++.+|...||++.+
T Consensus 4 ~~AELaAlir~~G~-l~~--------~~~~~~l~~~ten~~vARri~~ 42 (86)
T PF10298_consen 4 RIAELAALIRFSGS-LSI--------SNGRISLEISTENAAVARRIYS 42 (86)
T ss_dssp HHHHHHHHHHHHEE-ECT--------TTTEEEE--EES-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCE-EEE--------ECCEEEEEEEeCCHHHHHHHHH
Confidence 68999999999985 211 1234455667778888887754
No 194
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=20.68 E-value=2.3e+02 Score=17.77 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=35.1
Q ss_pred hhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHHH
Q 039679 7 FFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANR 63 (230)
Q Consensus 7 fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~R 63 (230)
.+.-+.+-...+|...+.-+|--..+.+..... ....++..|++.+.+.|....++
T Consensus 4 i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~ 59 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEA 59 (74)
T ss_pred EeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHH
Confidence 344455566788888888877433333221111 12478999999999988776653
No 195
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=20.56 E-value=1.3e+02 Score=23.15 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.0
Q ss_pred hhccCCCHHHHHHHHHHcCC-CccccccCCCCCCCCCCEEEEecCCHHHHHHHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGV-NDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANRIWITN 68 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi-~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~Rsil~~ 68 (230)
+.|-. -.|||.+.+.-.|| ++++ |..+++ ..=|.+++..++.+..++++-.+..+
T Consensus 18 ~~H~~-vWPEv~~~L~~~Gi~~ysI-fl~~~~---~~LF~~~E~~d~~~~~~~a~~~~~~~ 73 (102)
T TIGR02625 18 KRHNE-IWPELKEVLKSHGAHNYSI-FLDKQR---NLLFAYVEIEDEERWNAIAETDICQK 73 (102)
T ss_pred HHHHc-cCHHHHHHHHHCCCeEEEE-EEECCC---CeEEEEEEECchhcHHHhhCCHHHHH
Confidence 34443 47999999999999 4443 432222 45688999877767777777777777
Done!