Query 039679
Match_columns 230
No_of_seqs 208 out of 387
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tma_A Methyltransferase; thum 98.5 9.7E-08 3.3E-12 85.7 5.6 96 73-202 259-354 (354)
2 3lpm_A Putative methyltransfer 98.3 2.2E-07 7.4E-12 79.6 3.7 137 47-202 74-219 (259)
3 2ozv_A Hypothetical protein AT 98.1 1.7E-06 5.9E-11 74.5 3.5 98 88-203 114-213 (260)
4 3evz_A Methyltransferase; NYSG 97.9 6E-06 2.1E-10 68.4 4.3 101 88-205 122-223 (230)
5 3tm4_A TRNA (guanine N2-)-meth 97.9 3E-06 1E-10 77.0 2.5 121 46-203 244-369 (373)
6 3khk_A Type I restriction-modi 97.8 2.2E-05 7.6E-10 75.2 5.5 108 48-163 286-398 (544)
7 3lkd_A Type I restriction-modi 97.7 4.5E-05 1.5E-09 73.1 6.6 105 46-163 251-361 (542)
8 1boo_A Protein (N-4 cytosine-s 97.6 3.1E-05 1.1E-09 69.1 4.2 55 88-162 32-86 (323)
9 2zig_A TTHA0409, putative modi 97.5 6.1E-05 2.1E-09 66.2 4.7 60 88-162 39-99 (297)
10 3ldg_A Putative uncharacterize 97.5 8.2E-05 2.8E-09 68.3 5.1 112 46-199 259-374 (384)
11 2okc_A Type I restriction enzy 97.5 6.6E-05 2.3E-09 69.5 4.5 96 45-163 210-310 (445)
12 2ih2_A Modification methylase 97.4 9.8E-05 3.4E-09 66.7 4.9 110 88-203 97-212 (421)
13 1eg2_A Modification methylase 97.4 0.00013 4.3E-09 65.4 5.4 51 89-162 58-108 (319)
14 3s1s_A Restriction endonucleas 97.4 3.1E-05 1.1E-09 77.5 0.4 72 88-164 398-469 (878)
15 4dzr_A Protein-(glutamine-N5) 97.3 0.00013 4.6E-09 58.7 3.6 99 88-200 100-204 (215)
16 1g60_A Adenine-specific methyl 97.3 0.00013 4.5E-09 62.8 3.7 76 88-184 22-97 (260)
17 3k0b_A Predicted N6-adenine-sp 97.3 0.00011 3.7E-09 67.6 3.3 82 48-161 266-351 (393)
18 3v97_A Ribosomal RNA large sub 97.3 0.00086 2.9E-08 66.0 9.5 116 48-201 259-380 (703)
19 2f8l_A Hypothetical protein LM 97.2 0.00013 4.3E-09 65.1 2.8 95 49-163 163-259 (344)
20 3m6w_A RRNA methylase; rRNA me 97.2 5.6E-05 1.9E-09 71.2 -0.1 83 88-182 169-255 (464)
21 2ar0_A M.ecoki, type I restric 97.2 0.00031 1.1E-08 67.1 4.8 56 88-163 260-315 (541)
22 2b9e_A NOL1/NOP2/SUN domain fa 97.1 0.00011 3.8E-09 65.4 1.0 84 88-182 173-261 (309)
23 3ldu_A Putative methylase; str 97.1 0.00046 1.6E-08 63.1 5.0 113 48-200 260-376 (385)
24 1o9g_A RRNA methyltransferase; 97.0 0.00082 2.8E-08 56.6 5.2 47 89-161 168-214 (250)
25 3ufb_A Type I restriction-modi 96.9 0.00028 9.7E-09 67.2 2.0 16 88-103 301-316 (530)
26 1sqg_A SUN protein, FMU protei 96.8 0.00019 6.7E-09 66.0 0.3 83 88-182 314-400 (429)
27 2yxl_A PH0851 protein, 450AA l 96.8 0.00014 4.9E-09 67.5 -0.6 83 88-182 329-415 (450)
28 1nv8_A HEMK protein; class I a 96.8 0.002 6.8E-08 56.2 6.6 53 141-201 229-282 (284)
29 2b3t_A Protein methyltransfera 96.8 0.00069 2.4E-08 58.1 3.4 95 88-197 175-272 (276)
30 3ajd_A Putative methyltransfer 96.7 6.3E-05 2.1E-09 65.1 -3.8 48 136-183 187-238 (274)
31 2b78_A Hypothetical protein SM 96.4 0.0023 7.8E-08 58.2 4.3 47 89-161 285-332 (385)
32 3p9n_A Possible methyltransfer 96.4 0.0049 1.7E-07 49.3 5.8 43 88-163 112-156 (189)
33 2frx_A Hypothetical protein YE 96.3 0.0018 6.1E-08 61.0 3.1 64 88-163 186-249 (479)
34 2igt_A SAM dependent methyltra 96.2 0.0044 1.5E-07 55.4 4.8 51 88-163 224-275 (332)
35 2qm3_A Predicted methyltransfe 96.0 0.0045 1.5E-07 55.8 4.2 50 72-158 225-275 (373)
36 4dcm_A Ribosomal RNA large sub 95.9 0.0054 1.9E-07 55.7 4.3 47 88-163 291-337 (375)
37 1ws6_A Methyltransferase; stru 95.9 0.0079 2.7E-07 46.5 4.4 41 89-163 110-150 (171)
38 2as0_A Hypothetical protein PH 95.7 0.0077 2.6E-07 54.5 4.2 50 88-162 288-337 (396)
39 1wxx_A TT1595, hypothetical pr 95.6 0.0075 2.6E-07 54.5 3.8 50 88-162 278-327 (382)
40 3m4x_A NOL1/NOP2/SUN family pr 95.5 0.0032 1.1E-07 59.1 1.1 63 88-162 174-236 (456)
41 3q87_B N6 adenine specific DNA 95.5 0.018 6.1E-07 45.7 5.3 95 73-199 66-160 (170)
42 2ift_A Putative methylase HI07 95.4 0.013 4.3E-07 47.9 4.3 17 147-163 150-166 (201)
43 2fhp_A Methylase, putative; al 95.4 0.0088 3E-07 47.0 3.2 43 88-163 115-157 (187)
44 3v97_A Ribosomal RNA large sub 95.4 0.011 3.7E-07 58.2 4.3 52 88-162 608-659 (703)
45 4fzv_A Putative methyltransfer 95.4 0.0043 1.5E-07 56.5 1.3 34 134-167 258-291 (359)
46 2frn_A Hypothetical protein PH 95.3 0.01 3.4E-07 51.2 3.4 75 47-163 150-228 (278)
47 2esr_A Methyltransferase; stru 95.3 0.011 3.8E-07 46.4 3.4 42 89-163 100-141 (177)
48 4dmg_A Putative uncharacterize 95.3 0.012 4.1E-07 53.9 4.0 49 89-162 280-328 (393)
49 3dmg_A Probable ribosomal RNA 95.2 0.014 4.6E-07 53.2 4.2 84 48-163 258-343 (381)
50 3g89_A Ribosomal RNA small sub 95.0 0.025 8.7E-07 48.1 5.0 65 140-204 164-231 (249)
51 1dus_A MJ0882; hypothetical pr 95.0 0.022 7.6E-07 44.5 4.3 43 88-163 118-160 (194)
52 3dou_A Ribosomal RNA large sub 94.9 0.015 5.1E-07 47.4 3.1 26 135-160 114-139 (191)
53 3c0k_A UPF0064 protein YCCW; P 94.9 0.015 5.2E-07 52.6 3.4 48 88-160 292-339 (396)
54 2fpo_A Methylase YHHF; structu 94.8 0.031 1.1E-06 45.5 4.8 43 88-163 121-163 (202)
55 2pjd_A Ribosomal RNA small sub 94.7 0.024 8.1E-07 50.3 4.2 47 88-163 260-306 (343)
56 1ixk_A Methyltransferase; open 94.7 0.0094 3.2E-07 52.5 1.5 26 135-160 221-246 (315)
57 3eey_A Putative rRNA methylase 94.4 0.03 1E-06 44.6 3.7 65 138-205 117-191 (197)
58 1ej0_A FTSJ; methyltransferase 93.9 0.04 1.4E-06 42.0 3.5 27 137-163 113-139 (180)
59 3cgg_A SAM-dependent methyltra 93.8 0.096 3.3E-06 40.8 5.6 78 73-184 94-173 (195)
60 3orh_A Guanidinoacetate N-meth 93.5 0.029 9.9E-07 47.0 2.0 22 139-160 149-170 (236)
61 2xyq_A Putative 2'-O-methyl tr 93.4 0.023 7.8E-07 50.1 1.4 27 137-163 148-174 (290)
62 2oo3_A Protein involved in cat 93.0 0.12 4E-06 45.7 5.2 46 89-166 159-204 (283)
63 2yx1_A Hypothetical protein MJ 92.5 0.061 2.1E-06 47.7 2.8 38 88-163 257-294 (336)
64 1yub_A Ermam, rRNA methyltrans 92.5 0.011 3.7E-07 49.8 -2.0 66 72-164 79-149 (245)
65 2h00_A Methyltransferase 10 do 92.4 0.13 4.4E-06 42.8 4.6 65 134-199 186-250 (254)
66 1ve3_A Hypothetical protein PH 92.2 0.072 2.5E-06 43.0 2.6 56 73-163 90-145 (227)
67 2qfm_A Spermine synthase; sper 92.0 0.13 4.3E-06 47.0 4.2 27 136-162 290-316 (364)
68 3grz_A L11 mtase, ribosomal pr 91.9 0.021 7.3E-07 45.9 -0.8 59 139-201 138-196 (205)
69 3a27_A TYW2, uncharacterized p 91.9 0.062 2.1E-06 46.1 2.0 74 46-163 146-222 (272)
70 1iy9_A Spermidine synthase; ro 91.8 0.12 4.2E-06 44.4 3.8 21 140-160 169-189 (275)
71 1wy7_A Hypothetical protein PH 91.3 0.06 2.1E-06 43.2 1.3 15 89-103 112-126 (207)
72 2nyu_A Putative ribosomal RNA 91.3 0.13 4.4E-06 40.7 3.2 27 136-162 121-147 (196)
73 2pxx_A Uncharacterized protein 91.1 0.12 4.1E-06 41.1 2.9 106 73-205 94-201 (215)
74 1yb2_A Hypothetical protein TA 90.8 0.084 2.9E-06 44.9 1.7 45 141-185 192-236 (275)
75 2pwy_A TRNA (adenine-N(1)-)-me 90.6 0.052 1.8E-06 44.9 0.2 45 141-185 179-223 (258)
76 3adn_A Spermidine synthase; am 90.5 0.19 6.5E-06 43.9 3.8 23 140-162 178-200 (294)
77 1zx0_A Guanidinoacetate N-meth 90.3 0.16 5.4E-06 41.9 2.9 25 138-162 148-172 (236)
78 1l3i_A Precorrin-6Y methyltran 90.3 0.08 2.8E-06 41.1 1.1 42 140-181 114-155 (192)
79 3e05_A Precorrin-6Y C5,15-meth 90.2 0.36 1.2E-05 38.6 5.0 39 140-178 122-160 (204)
80 3mti_A RRNA methylase; SAM-dep 90.0 0.18 6.1E-06 39.6 2.9 25 138-162 113-137 (185)
81 2plw_A Ribosomal RNA methyltra 89.9 0.23 7.9E-06 39.4 3.6 26 137-162 131-156 (201)
82 3mb5_A SAM-dependent methyltra 89.7 0.16 5.3E-06 42.2 2.4 23 142-164 176-198 (255)
83 2pt6_A Spermidine synthase; tr 89.4 0.19 6.6E-06 44.3 3.0 22 140-161 210-231 (321)
84 1mjf_A Spermidine synthase; sp 89.4 0.21 7.1E-06 43.0 3.1 23 140-162 173-195 (281)
85 3e23_A Uncharacterized protein 89.4 0.27 9.2E-06 39.4 3.6 69 138-206 119-205 (211)
86 2nxc_A L11 mtase, ribosomal pr 89.4 0.089 3.1E-06 44.5 0.7 53 139-194 197-249 (254)
87 1o54_A SAM-dependent O-methylt 89.2 0.17 5.9E-06 42.8 2.4 22 142-163 195-216 (277)
88 1jsx_A Glucose-inhibited divis 89.0 0.44 1.5E-05 37.9 4.6 61 139-202 144-205 (207)
89 3bwc_A Spermidine synthase; SA 88.8 0.18 6.3E-06 43.9 2.3 23 140-162 190-212 (304)
90 3id6_C Fibrillarin-like rRNA/T 88.7 0.18 6E-06 42.9 2.1 22 141-162 162-183 (232)
91 1inl_A Spermidine synthase; be 88.7 0.18 6E-06 43.9 2.1 22 140-161 185-206 (296)
92 2avd_A Catechol-O-methyltransf 88.5 0.3 1E-05 39.6 3.3 20 140-159 159-178 (229)
93 3tr6_A O-methyltransferase; ce 88.0 0.31 1.1E-05 39.4 3.1 20 140-159 154-173 (225)
94 2ipx_A RRNA 2'-O-methyltransfe 87.9 0.35 1.2E-05 39.7 3.4 44 140-183 162-214 (233)
95 3dr5_A Putative O-methyltransf 87.8 0.36 1.2E-05 40.0 3.4 19 140-158 143-161 (221)
96 2fyt_A Protein arginine N-meth 87.8 0.39 1.3E-05 42.5 3.8 50 73-157 118-168 (340)
97 1g8a_A Fibrillarin-like PRE-rR 87.7 0.36 1.2E-05 39.2 3.3 23 141-163 159-181 (227)
98 3gdh_A Trimethylguanosine synt 87.3 0.89 3E-05 37.1 5.6 16 88-103 143-158 (241)
99 3duw_A OMT, O-methyltransferas 87.1 0.62 2.1E-05 37.6 4.4 23 140-162 147-169 (223)
100 1i9g_A Hypothetical protein RV 87.0 0.2 6.7E-06 42.1 1.3 22 142-163 185-206 (280)
101 1nt2_A Fibrillarin-like PRE-rR 86.8 0.33 1.1E-05 39.8 2.6 24 140-163 141-164 (210)
102 2o07_A Spermidine synthase; st 86.8 0.29 9.9E-06 42.8 2.3 22 140-161 189-210 (304)
103 2p8j_A S-adenosylmethionine-de 86.7 0.65 2.2E-05 36.7 4.3 26 139-164 107-132 (209)
104 3ntv_A MW1564 protein; rossman 86.6 0.43 1.5E-05 39.3 3.2 20 139-158 155-174 (232)
105 2yvl_A TRMI protein, hypotheti 86.5 0.52 1.8E-05 38.5 3.7 22 142-163 172-193 (248)
106 3hm2_A Precorrin-6Y C5,15-meth 86.5 0.18 6.1E-06 39.0 0.8 44 141-184 108-151 (178)
107 3axs_A Probable N(2),N(2)-dime 86.4 0.33 1.1E-05 44.5 2.6 74 47-159 79-157 (392)
108 2b2c_A Spermidine synthase; be 86.2 0.36 1.2E-05 42.6 2.6 21 140-160 202-222 (314)
109 3bt7_A TRNA (uracil-5-)-methyl 86.1 0.32 1.1E-05 43.5 2.3 12 89-100 295-306 (369)
110 2gpy_A O-methyltransferase; st 86.1 0.34 1.2E-05 39.6 2.3 20 140-159 140-159 (233)
111 2i7c_A Spermidine synthase; tr 85.9 0.37 1.3E-05 41.5 2.5 22 140-161 172-193 (283)
112 1xj5_A Spermidine synthase 1; 85.8 0.4 1.4E-05 42.7 2.8 21 140-160 215-235 (334)
113 1uir_A Polyamine aminopropyltr 85.7 0.39 1.3E-05 42.0 2.6 22 140-161 175-196 (314)
114 3kkz_A Uncharacterized protein 85.7 1.1 3.9E-05 37.1 5.5 55 72-164 100-154 (267)
115 2gs9_A Hypothetical protein TT 85.7 0.82 2.8E-05 36.4 4.4 25 140-164 112-136 (211)
116 1xdz_A Methyltransferase GIDB; 85.6 0.51 1.7E-05 39.0 3.2 66 139-204 153-221 (240)
117 2zfu_A Nucleomethylin, cerebra 85.1 1.5 5E-05 35.0 5.7 62 140-205 131-194 (215)
118 3tfw_A Putative O-methyltransf 85.0 0.87 3E-05 38.0 4.4 20 140-159 150-169 (248)
119 1yzh_A TRNA (guanine-N(7)-)-me 84.9 0.52 1.8E-05 38.0 2.8 23 139-161 135-157 (214)
120 1i1n_A Protein-L-isoaspartate 84.5 0.24 8.2E-06 40.2 0.6 20 144-163 166-185 (226)
121 1fbn_A MJ fibrillarin homologu 84.4 1.4 4.8E-05 36.0 5.3 62 139-202 157-228 (230)
122 2kw5_A SLR1183 protein; struct 84.1 1.1 3.7E-05 35.4 4.4 26 139-164 110-135 (202)
123 1g6q_1 HnRNP arginine N-methyl 84.1 0.46 1.6E-05 41.6 2.3 50 73-157 92-142 (328)
124 3gjy_A Spermidine synthase; AP 84.0 0.78 2.7E-05 40.8 3.8 23 140-162 180-202 (317)
125 3r3h_A O-methyltransferase, SA 83.7 0.57 2E-05 39.2 2.7 19 140-158 150-168 (242)
126 3m70_A Tellurite resistance pr 83.6 1.4 4.6E-05 37.1 5.0 57 73-165 172-228 (286)
127 3f4k_A Putative methyltransfer 83.5 1.3 4.3E-05 36.3 4.7 25 140-164 130-154 (257)
128 1ri5_A MRNA capping enzyme; me 83.0 1.1 3.8E-05 37.3 4.2 25 139-163 153-177 (298)
129 1sui_A Caffeoyl-COA O-methyltr 83.0 1.1 3.7E-05 37.6 4.1 19 140-158 170-188 (247)
130 3dlc_A Putative S-adenosyl-L-m 82.6 0.97 3.3E-05 35.7 3.5 22 140-161 128-149 (219)
131 2dul_A N(2),N(2)-dimethylguano 82.2 0.81 2.8E-05 41.4 3.2 19 141-159 145-163 (378)
132 2xvm_A Tellurite resistance pr 82.0 1.6 5.4E-05 34.0 4.5 26 139-164 115-140 (199)
133 1nkv_A Hypothetical protein YJ 81.8 1.5 5.2E-05 35.8 4.6 25 140-164 120-144 (256)
134 3c3p_A Methyltransferase; NP_9 81.2 0.98 3.3E-05 36.2 3.1 19 140-158 140-158 (210)
135 4df3_A Fibrillarin-like rRNA/T 80.9 1.2 4E-05 37.8 3.6 23 140-162 162-184 (233)
136 3bkw_A MLL3908 protein, S-aden 80.8 1 3.5E-05 36.4 3.1 24 140-163 124-147 (243)
137 3sm3_A SAM-dependent methyltra 80.7 1.3 4.3E-05 35.5 3.6 23 140-162 121-143 (235)
138 3dxy_A TRNA (guanine-N(7)-)-me 80.5 1.6 5.4E-05 35.9 4.2 22 140-161 130-151 (218)
139 3dtn_A Putative methyltransfer 80.5 2.3 7.8E-05 34.3 5.1 24 140-163 128-151 (234)
140 3cbg_A O-methyltransferase; cy 79.8 1.2 4.2E-05 36.6 3.3 20 140-159 162-181 (232)
141 2hnk_A SAM-dependent O-methylt 79.5 1.4 4.6E-05 36.2 3.5 21 140-160 161-181 (239)
142 3h2b_A SAM-dependent methyltra 79.2 0.88 3E-05 36.0 2.1 63 139-203 120-197 (203)
143 3c3y_A Pfomt, O-methyltransfer 79.0 1.3 4.3E-05 36.8 3.1 20 140-159 161-180 (237)
144 3ujc_A Phosphoethanolamine N-m 79.0 1.6 5.4E-05 35.7 3.7 27 139-165 138-164 (266)
145 3k6r_A Putative transferase PH 78.5 0.88 3E-05 39.6 2.1 67 50-158 153-223 (278)
146 3r0q_C Probable protein argini 78.2 0.7 2.4E-05 41.4 1.4 19 139-157 148-166 (376)
147 3dh0_A SAM dependent methyltra 77.8 2.3 7.9E-05 33.8 4.3 59 140-202 123-193 (219)
148 2b25_A Hypothetical protein; s 77.7 1.2 4E-05 38.8 2.7 22 142-163 201-222 (336)
149 3o4f_A Spermidine synthase; am 77.4 2.4 8.2E-05 37.3 4.6 23 141-163 179-201 (294)
150 3bus_A REBM, methyltransferase 77.3 2.8 9.6E-05 34.6 4.8 25 140-164 146-170 (273)
151 1ne2_A Hypothetical protein TA 77.2 2.3 8E-05 33.5 4.1 15 88-102 109-123 (200)
152 3ocj_A Putative exported prote 77.2 0.91 3.1E-05 38.8 1.8 56 72-162 174-229 (305)
153 2h1r_A Dimethyladenosine trans 76.8 2.2 7.6E-05 36.8 4.2 27 72-103 94-120 (299)
154 3q7e_A Protein arginine N-meth 76.5 1.6 5.4E-05 38.5 3.2 76 45-157 91-170 (349)
155 3p2e_A 16S rRNA methylase; met 76.4 0.93 3.2E-05 37.5 1.6 22 140-161 119-140 (225)
156 4fsd_A Arsenic methyltransfera 76.4 1.8 6.3E-05 38.5 3.6 25 140-164 183-207 (383)
157 3njr_A Precorrin-6Y methylase; 76.3 2.6 9E-05 33.9 4.3 43 142-184 136-178 (204)
158 2pbf_A Protein-L-isoaspartate 76.3 1 3.4E-05 36.4 1.7 19 144-162 177-195 (227)
159 3l8d_A Methyltransferase; stru 76.0 2.1 7.1E-05 34.6 3.6 24 140-163 133-156 (242)
160 3gu3_A Methyltransferase; alph 75.1 2.4 8.1E-05 35.8 3.8 23 140-162 106-128 (284)
161 1xxl_A YCGJ protein; structura 74.9 2.8 9.5E-05 34.2 4.1 24 140-163 104-127 (239)
162 3pfg_A N-methyltransferase; N, 74.9 2.6 9E-05 34.7 4.0 22 138-159 129-150 (263)
163 2yqz_A Hypothetical protein TT 74.4 2.7 9.2E-05 34.2 3.9 24 140-163 121-144 (263)
164 3u81_A Catechol O-methyltransf 73.9 2.2 7.4E-05 34.5 3.2 18 141-159 152-169 (221)
165 1vlm_A SAM-dependent methyltra 73.8 3.2 0.00011 33.3 4.2 24 140-163 119-142 (219)
166 3ckk_A TRNA (guanine-N(7)-)-me 73.6 2.3 7.9E-05 35.4 3.3 23 140-162 148-170 (235)
167 1wg8_A Predicted S-adenosylmet 73.4 1.6 5.5E-05 38.4 2.3 24 137-160 210-233 (285)
168 2p41_A Type II methyltransfera 72.7 4.4 0.00015 35.3 5.0 21 141-161 172-192 (305)
169 1af7_A Chemotaxis receptor met 72.7 3.5 0.00012 35.5 4.4 22 137-158 229-250 (274)
170 3mgg_A Methyltransferase; NYSG 72.6 2.5 8.4E-05 35.1 3.3 23 140-162 122-144 (276)
171 2yxd_A Probable cobalt-precorr 72.3 1.9 6.4E-05 32.9 2.3 43 140-184 113-155 (183)
172 3tka_A Ribosomal RNA small sub 71.9 1.8 6.1E-05 39.2 2.3 24 137-160 251-274 (347)
173 2vdv_E TRNA (guanine-N(7)-)-me 70.3 3 0.0001 34.4 3.2 22 140-161 153-174 (246)
174 3bzb_A Uncharacterized protein 69.9 4.3 0.00015 34.4 4.2 45 139-183 179-234 (281)
175 1vbf_A 231AA long hypothetical 69.7 1.6 5.6E-05 35.2 1.5 19 145-163 150-168 (231)
176 2fca_A TRNA (guanine-N(7)-)-me 69.1 7 0.00024 31.5 5.2 22 140-161 133-154 (213)
177 2yxe_A Protein-L-isoaspartate 69.1 1.7 5.7E-05 34.7 1.4 20 144-163 161-180 (215)
178 3ll7_A Putative methyltransfer 68.8 1.2 4.1E-05 41.0 0.5 15 88-102 162-176 (410)
179 2oxt_A Nucleoside-2'-O-methylt 68.7 4.6 0.00016 34.4 4.2 18 142-159 165-184 (265)
180 3lbf_A Protein-L-isoaspartate 68.5 3.3 0.00011 32.7 3.1 18 145-162 159-176 (210)
181 2cmg_A Spermidine synthase; tr 68.2 2.7 9.3E-05 35.8 2.6 20 142-161 153-172 (262)
182 1m6y_A S-adenosyl-methyltransf 67.9 2.6 9E-05 36.9 2.5 24 137-160 222-245 (301)
183 2ld4_A Anamorsin; methyltransf 67.9 2.6 8.8E-05 32.6 2.2 25 140-164 81-105 (176)
184 2wa2_A Non-structural protein 67.4 4.9 0.00017 34.5 4.1 18 142-159 173-192 (276)
185 1qam_A ERMC' methyltransferase 66.4 2.3 7.8E-05 35.5 1.7 20 144-163 130-149 (244)
186 1zq9_A Probable dimethyladenos 65.4 1.8 6.3E-05 37.1 1.0 28 72-104 81-108 (285)
187 3ege_A Putative methyltransfer 64.7 7.2 0.00025 32.2 4.6 23 140-163 111-133 (261)
188 3b3j_A Histone-arginine methyl 64.6 3.1 0.0001 38.8 2.4 17 141-157 244-260 (480)
189 3dli_A Methyltransferase; PSI- 62.8 5.2 0.00018 32.4 3.3 26 139-164 119-144 (240)
190 4hg2_A Methyltransferase type 62.2 3.3 0.00011 35.1 2.0 23 140-162 115-137 (257)
191 2jjq_A Uncharacterized RNA met 61.6 6.2 0.00021 36.1 3.8 11 89-99 353-363 (425)
192 3sso_A Methyltransferase; macr 60.4 6.5 0.00022 36.4 3.7 20 140-159 304-323 (419)
193 3thr_A Glycine N-methyltransfe 60.3 5.3 0.00018 33.3 2.9 27 137-163 152-178 (293)
194 1r18_A Protein-L-isoaspartate( 59.2 3.8 0.00013 33.1 1.8 19 144-162 178-196 (227)
195 2p7i_A Hypothetical protein; p 58.8 5 0.00017 32.0 2.4 24 140-163 120-144 (250)
196 2aot_A HMT, histamine N-methyl 58.1 5.8 0.0002 33.4 2.8 24 140-163 152-175 (292)
197 2y1w_A Histone-arginine methyl 57.2 5.5 0.00019 34.9 2.6 18 141-158 136-153 (348)
198 3bkx_A SAM-dependent methyltra 56.8 12 0.00041 30.7 4.5 23 141-163 140-162 (275)
199 3vc1_A Geranyl diphosphate 2-C 56.5 6.8 0.00023 33.3 3.0 28 139-166 200-227 (312)
200 2a14_A Indolethylamine N-methy 56.4 4.8 0.00016 33.5 2.0 24 139-162 176-199 (263)
201 3m33_A Uncharacterized protein 56.4 3 0.0001 33.8 0.6 16 142-157 124-139 (226)
202 3hem_A Cyclopropane-fatty-acyl 56.3 9.4 0.00032 32.1 3.9 27 138-164 161-187 (302)
203 2oyr_A UPF0341 protein YHIQ; a 55.7 4.7 0.00016 34.5 1.8 15 89-103 164-178 (258)
204 2p35_A Trans-aconitate 2-methy 55.6 6.7 0.00023 31.8 2.7 24 140-163 112-135 (259)
205 3c6k_A Spermine synthase; sper 55.4 7.4 0.00025 35.5 3.2 21 139-159 310-330 (381)
206 1kpg_A CFA synthase;, cyclopro 55.2 9.6 0.00033 31.6 3.7 26 139-164 147-172 (287)
207 3hnr_A Probable methyltransfer 54.9 9.8 0.00034 30.0 3.5 24 140-163 125-148 (220)
208 2fk8_A Methoxy mycolic acid sy 54.4 9.9 0.00034 32.2 3.7 27 139-165 173-199 (318)
209 3ofk_A Nodulation protein S; N 54.4 7.9 0.00027 30.5 2.9 26 138-163 132-157 (216)
210 3iv6_A Putative Zn-dependent a 54.3 14 0.00047 31.5 4.6 22 140-162 129-150 (261)
211 1uwv_A 23S rRNA (uracil-5-)-me 53.9 4.7 0.00016 36.7 1.6 12 89-100 356-367 (433)
212 2g72_A Phenylethanolamine N-me 53.4 6.2 0.00021 33.1 2.2 65 139-203 194-280 (289)
213 2qy6_A UPF0209 protein YFCK; s 53.2 8 0.00027 32.9 2.9 21 140-160 193-213 (257)
214 3d2l_A SAM-dependent methyltra 52.8 8.6 0.00029 30.7 2.9 25 139-163 116-140 (243)
215 3g5l_A Putative S-adenosylmeth 52.8 7.1 0.00024 31.7 2.4 25 139-163 124-148 (253)
216 1dl5_A Protein-L-isoaspartate 52.7 4.7 0.00016 34.7 1.3 19 145-163 160-178 (317)
217 2ex4_A Adrenal gland protein A 52.2 8.7 0.0003 31.1 2.9 25 139-163 164-188 (241)
218 2avn_A Ubiquinone/menaquinone 51.8 7.6 0.00026 31.9 2.5 25 139-163 131-155 (260)
219 1y8c_A S-adenosylmethionine-de 51.1 10 0.00035 30.2 3.1 25 139-163 121-145 (246)
220 3i9f_A Putative type 11 methyl 51.0 10 0.00035 28.6 2.9 25 140-164 92-116 (170)
221 3ou2_A SAM-dependent methyltra 50.8 8.2 0.00028 30.2 2.4 26 138-163 124-149 (218)
222 2vdw_A Vaccinia virus capping 50.8 7.6 0.00026 33.5 2.4 24 140-163 149-172 (302)
223 2o57_A Putative sarcosine dime 50.7 9.2 0.00032 31.9 2.9 27 139-165 166-192 (297)
224 3g2m_A PCZA361.24; SAM-depende 50.4 9 0.00031 32.2 2.8 27 138-164 168-194 (299)
225 1jg1_A PIMT;, protein-L-isoasp 50.1 5.7 0.00019 32.3 1.4 18 145-162 174-191 (235)
226 1vl5_A Unknown conserved prote 49.7 11 0.00036 30.9 3.0 24 140-163 120-143 (260)
227 3e8s_A Putative SAM dependent 49.5 8.1 0.00028 30.3 2.2 24 140-163 132-155 (227)
228 3cc8_A Putative methyltransfer 49.3 8.3 0.00028 30.3 2.2 24 140-163 110-133 (230)
229 2r6z_A UPF0341 protein in RSP 48.8 6.5 0.00022 33.3 1.6 15 88-102 160-174 (258)
230 4htf_A S-adenosylmethionine-de 48.8 8.9 0.00031 31.8 2.5 24 140-163 153-176 (285)
231 2i62_A Nicotinamide N-methyltr 48.6 9.6 0.00033 30.9 2.6 25 138-162 176-200 (265)
232 3ccf_A Cyclopropane-fatty-acyl 47.6 9.4 0.00032 31.7 2.4 24 140-163 134-157 (279)
233 1m6e_X S-adenosyl-L-methionnin 46.8 17 0.00058 32.7 4.1 29 138-166 187-215 (359)
234 1xtp_A LMAJ004091AAA; SGPP, st 46.3 10 0.00035 30.5 2.4 26 138-163 175-200 (254)
235 3mq2_A 16S rRNA methyltransfer 46.1 14 0.00049 29.2 3.2 23 140-162 120-142 (218)
236 1wzn_A SAM-dependent methyltra 45.4 13 0.00044 30.0 2.9 25 138-162 123-147 (252)
237 3g5t_A Trans-aconitate 3-methy 44.9 9.4 0.00032 32.1 2.0 23 139-161 128-150 (299)
238 3bgv_A MRNA CAP guanine-N7 met 44.9 12 0.00039 31.8 2.6 25 139-163 134-158 (313)
239 3b5i_A S-adenosyl-L-methionine 44.4 13 0.00044 33.6 2.9 27 139-165 204-230 (374)
240 1x5s_A Cold-inducible RNA-bind 44.1 74 0.0025 21.7 7.0 55 8-62 18-72 (102)
241 4gek_A TRNA (CMO5U34)-methyltr 43.9 13 0.00044 31.3 2.7 23 140-162 158-180 (261)
242 2bm8_A Cephalosporin hydroxyla 43.8 14 0.00048 30.4 2.9 21 139-159 165-186 (236)
243 3ggd_A SAM-dependent methyltra 41.0 16 0.00055 29.4 2.8 24 139-162 142-165 (245)
244 3bxo_A N,N-dimethyltransferase 40.8 13 0.00046 29.4 2.3 26 138-163 119-144 (239)
245 1p91_A Ribosomal RNA large sub 40.8 12 0.00041 30.7 2.0 22 143-164 161-182 (269)
246 3opn_A Putative hemolysin; str 40.3 13 0.00044 30.8 2.1 64 140-203 117-203 (232)
247 3lcc_A Putative methyl chlorid 40.3 16 0.00054 29.3 2.6 25 139-163 150-174 (235)
248 3gru_A Dimethyladenosine trans 39.8 8 0.00027 33.6 0.8 30 72-104 100-129 (295)
249 1pjz_A Thiopurine S-methyltran 39.7 18 0.00062 28.7 2.9 22 139-160 119-140 (203)
250 1x5t_A Splicing factor 3B subu 39.7 85 0.0029 21.1 6.5 54 9-62 12-66 (96)
251 3g07_A 7SK snRNA methylphospha 39.2 14 0.00048 31.2 2.2 66 138-203 198-288 (292)
252 2dnz_A Probable RNA-binding pr 38.7 79 0.0027 21.2 5.9 54 9-62 12-65 (95)
253 3uwp_A Histone-lysine N-methyl 38.1 29 0.00098 32.2 4.3 22 143-164 271-292 (438)
254 1yf3_A DNA adenine methylase; 38.1 11 0.00037 32.1 1.3 11 91-101 166-176 (259)
255 2qe6_A Uncharacterized protein 37.9 23 0.0008 29.8 3.4 25 139-163 175-199 (274)
256 2cqb_A Peptidyl-prolyl CIS-tra 37.8 95 0.0033 21.2 6.4 53 10-62 20-72 (102)
257 2efj_A 3,7-dimethylxanthine me 37.6 18 0.00062 32.8 2.8 28 139-166 204-231 (384)
258 2mss_A Protein (musashi1); RNA 37.5 80 0.0027 20.2 6.2 52 10-61 7-58 (75)
259 4e2x_A TCAB9; kijanose, tetron 36.7 17 0.00057 32.2 2.4 24 139-162 187-210 (416)
260 2dpm_A M.dpnii 1, protein (ade 36.6 12 0.00041 32.3 1.4 11 91-101 189-199 (284)
261 3fpf_A Mtnas, putative unchara 36.5 19 0.00066 31.5 2.7 22 140-161 202-223 (298)
262 2g1p_A DNA adenine methylase; 36.5 12 0.0004 32.2 1.3 10 91-100 176-185 (278)
263 1iqt_A AUF1, heterogeneous nuc 36.3 83 0.0028 20.0 5.5 52 11-62 8-59 (75)
264 2x1f_A MRNA 3'-END-processing 36.2 99 0.0034 20.9 6.1 53 10-62 10-62 (96)
265 2gb4_A Thiopurine S-methyltran 35.6 16 0.00055 30.5 2.0 21 139-159 170-190 (252)
266 3lst_A CALO1 methyltransferase 34.3 32 0.0011 29.6 3.8 25 139-163 265-289 (348)
267 2px2_A Genome polyprotein [con 33.9 31 0.001 30.0 3.5 21 142-163 164-184 (269)
268 1whw_A Hypothetical protein ri 33.6 1.1E+02 0.0038 20.7 6.2 54 9-62 15-68 (99)
269 3jwh_A HEN1; methyltransferase 33.5 26 0.00088 27.6 2.8 22 138-159 119-140 (217)
270 1x19_A CRTF-related protein; m 32.5 42 0.0014 28.9 4.3 26 137-162 272-297 (359)
271 3dp7_A SAM-dependent methyltra 31.8 40 0.0014 29.3 4.1 27 137-163 264-290 (363)
272 3hp7_A Hemolysin, putative; st 31.7 21 0.00072 31.0 2.1 63 140-202 165-250 (291)
273 3i53_A O-methyltransferase; CO 31.6 36 0.0012 28.9 3.6 26 138-163 252-277 (332)
274 1uaw_A Mouse-musashi-1; RNP-ty 31.5 84 0.0029 20.1 4.8 52 11-62 9-60 (77)
275 2e5h_A Zinc finger CCHC-type a 31.5 78 0.0027 21.2 4.8 53 10-62 24-76 (94)
276 1x5u_A Splicing factor 3B subu 31.3 99 0.0034 21.2 5.5 55 8-62 21-75 (105)
277 2dgs_A DAZ-associated protein 30.6 1E+02 0.0035 20.9 5.4 53 9-61 17-69 (99)
278 1s7i_A Hypothetical protein PA 30.4 21 0.00073 27.0 1.7 23 44-66 85-107 (124)
279 3kr9_A SAM-dependent methyltra 29.5 40 0.0014 28.0 3.5 61 137-199 96-156 (225)
280 3mdf_A Peptidyl-prolyl CIS-tra 29.4 89 0.003 20.4 4.7 54 9-62 14-67 (85)
281 2cqd_A RNA-binding region cont 29.2 1.1E+02 0.0037 21.5 5.5 52 10-61 25-76 (116)
282 1x4h_A RNA-binding protein 28; 29.1 1.4E+02 0.0048 20.5 6.1 55 8-62 21-75 (111)
283 2cpe_A RNA-binding protein EWS 28.7 1.5E+02 0.005 20.6 6.2 53 10-62 23-83 (113)
284 2cqc_A Arginine/serine-rich sp 28.4 75 0.0026 21.3 4.3 54 9-62 22-75 (95)
285 4hc4_A Protein arginine N-meth 28.4 37 0.0013 30.5 3.3 26 138-163 167-198 (376)
286 1x4e_A RNA binding motif, sing 28.3 71 0.0024 21.0 4.1 54 9-62 12-65 (85)
287 3reo_A (ISO)eugenol O-methyltr 28.2 41 0.0014 29.4 3.4 24 138-161 278-301 (368)
288 3gwz_A MMCR; methyltransferase 28.0 60 0.0021 28.2 4.5 25 139-163 286-310 (369)
289 2dnm_A SRP46 splicing factor; 27.9 80 0.0027 21.7 4.4 55 8-62 19-73 (103)
290 2cph_A RNA binding motif prote 27.8 1.5E+02 0.005 20.3 6.3 55 8-62 21-76 (107)
291 3bs9_A Nucleolysin TIA-1 isofo 27.6 89 0.003 20.5 4.5 55 8-62 12-66 (87)
292 3mcz_A O-methyltransferase; ad 27.6 43 0.0015 28.6 3.4 26 138-163 265-290 (352)
293 3jwg_A HEN1, methyltransferase 27.5 40 0.0014 26.4 3.0 23 139-162 120-142 (219)
294 2cpz_A CUG triplet repeat RNA- 27.4 98 0.0034 21.7 4.9 54 9-62 32-85 (115)
295 2ip2_A Probable phenazine-spec 27.4 57 0.0019 27.6 4.2 25 138-162 250-274 (334)
296 2div_A TRNA selenocysteine ass 26.8 1.1E+02 0.0037 20.7 4.9 53 9-61 16-69 (99)
297 3ex7_B RNA-binding protein 8A; 26.7 1.3E+02 0.0046 21.3 5.7 57 6-62 26-82 (126)
298 3p9c_A Caffeic acid O-methyltr 26.7 45 0.0015 29.1 3.4 25 138-162 276-300 (364)
299 2r3s_A Uncharacterized protein 25.9 43 0.0015 28.2 3.1 27 137-163 248-274 (335)
300 2fy1_A RNA-binding motif prote 25.8 1.7E+02 0.0058 20.8 6.1 52 10-62 15-66 (116)
301 2kxn_B Transformer-2 protein h 25.6 1.4E+02 0.0049 21.8 5.7 53 10-62 54-106 (129)
302 1oo0_B CG8781-PA, drosophila Y 25.5 1.7E+02 0.0057 20.2 6.1 55 8-62 32-86 (110)
303 2dgp_A Bruno-like 4, RNA bindi 24.6 1.7E+02 0.0058 19.9 7.0 54 9-62 20-73 (106)
304 2ku7_A MLL1 PHD3-CYP33 RRM chi 23.9 2E+02 0.0068 20.5 6.2 53 10-62 71-123 (140)
305 2lxi_A RNA-binding protein 10; 23.5 1.8E+02 0.006 19.7 7.3 53 10-62 9-62 (91)
306 3md1_A Nuclear and cytoplasmic 23.3 1.2E+02 0.004 19.6 4.4 53 10-62 9-61 (83)
307 1p27_B RNA-binding protein 8A; 22.9 1.1E+02 0.0038 21.0 4.4 56 7-62 28-83 (106)
308 3evf_A RNA-directed RNA polyme 22.2 42 0.0014 29.2 2.2 18 141-158 164-182 (277)
309 1whv_A Poly(A)-specific ribonu 21.7 1.4E+02 0.0047 22.1 4.7 42 12-61 25-66 (100)
310 1x4b_A Heterogeneous nuclear r 21.5 1.7E+02 0.0057 20.5 5.2 51 11-61 36-86 (116)
311 2lea_A Serine/arginine-rich sp 21.5 1.2E+02 0.0042 22.3 4.6 53 9-61 54-106 (135)
312 2khc_A Testis-specific RNP-typ 21.2 89 0.003 22.0 3.6 55 8-62 46-100 (118)
313 1qzz_A RDMB, aclacinomycin-10- 21.1 49 0.0017 28.5 2.5 23 139-161 266-288 (374)
314 1fp1_D Isoliquiritigenin 2'-O- 20.9 57 0.0019 28.3 2.9 24 139-162 285-308 (372)
315 1h2v_Z 20 kDa nuclear CAP bind 20.9 1E+02 0.0036 23.0 4.1 54 9-62 46-99 (156)
316 2dgo_A Cytotoxic granule-assoc 20.9 1.1E+02 0.0039 21.3 4.1 57 6-62 19-75 (115)
317 1v66_A Protein inhibitor of ac 20.8 48 0.0016 22.7 1.8 25 6-30 6-30 (65)
318 2la6_A RNA-binding protein FUS 20.7 1.4E+02 0.0048 20.2 4.5 57 6-62 17-81 (99)
319 1tw3_A COMT, carminomycin 4-O- 20.5 59 0.002 27.8 2.9 24 139-162 267-290 (360)
320 2rs2_A Musashi-1, RNA-binding 20.5 1.9E+02 0.0064 20.2 5.3 52 11-62 34-85 (109)
321 2cqp_A RNA-binding protein 12; 20.3 99 0.0034 20.9 3.6 54 9-62 22-75 (98)
322 3p5t_L Cleavage and polyadenyl 20.0 1.4E+02 0.0047 20.0 4.3 54 9-62 8-63 (90)
323 2ywk_A Putative RNA-binding pr 20.0 1.2E+02 0.0041 20.3 4.0 53 9-62 23-75 (95)
No 1
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.50 E-value=9.7e-08 Score=85.70 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=64.8
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
...|....+... +.||.||||||||.|-+.. -.+.+++..+++.+.++|++
T Consensus 259 ~~~D~~~~~~~~---~~~D~Ii~npPyg~r~~~~--------------------------~~~~~~~~~~~~~~~~~Lkp 309 (354)
T 3tma_A 259 LRADARHLPRFF---PEVDRILANPPHGLRLGRK--------------------------EGLFHLYWDFLRGALALLPP 309 (354)
T ss_dssp EECCGGGGGGTC---CCCSEEEECCCSCC----C--------------------------HHHHHHHHHHHHHHHHTSCT
T ss_pred EeCChhhCcccc---CCCCEEEECCCCcCccCCc--------------------------ccHHHHHHHHHHHHHHhcCC
Confidence 444555433332 2589999999999976542 14677889999999999999
Q ss_pred CCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEEEEc
Q 039679 153 GGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVKI 202 (230)
Q Consensus 153 gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K~ 202 (230)
||+++++.|... . ...+.. .||+.... ....+++..+.+++++|.
T Consensus 310 gG~l~i~t~~~~--~-~~~~~~-~g~~~~~~-~~l~~g~l~~~i~vl~rl 354 (354)
T 3tma_A 310 GGRVALLTLRPA--L-LKRALP-PGFALRHA-RVVEQGGVYPRVFVLEKL 354 (354)
T ss_dssp TCEEEEEESCHH--H-HHHHCC-TTEEEEEE-EECCBTTBCCEEEEEEEC
T ss_pred CcEEEEEeCCHH--H-HHHHhh-cCcEEEEE-EEEEeCCEEEEEEEEEcC
Confidence 999999977431 1 112233 68887654 344577888889998873
No 2
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.34 E-value=2.2e-07 Score=79.56 Aligned_cols=137 Identities=18% Similarity=0.107 Sum_probs=75.8
Q ss_pred EEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCC--CCCCcccccceeEeCCCCcccccc-cccccccCCCCCCC
Q 039679 47 HFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPP--WRPGLKEVFDAIICDPPYGVRASG-RKLLKGVLDPYTVP 119 (230)
Q Consensus 47 ~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p--~r~~l~e~~DaIvtDPPYGiRa~~-rk~~~~~~~~~~~~ 119 (230)
-++-++-+..+...+++.+-.. +- .++..|....+ +.. +.||+|||||||....+. .+....
T Consensus 74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~---~~fD~Ii~npPy~~~~~~~~~~~~~-------- 142 (259)
T 3lpm_A 74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPK---ERADIVTCNPPYFATPDTSLKNTNE-------- 142 (259)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCT---TCEEEEEECCCC---------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhcc---CCccEEEECCCCCCCccccCCCCch--------
Confidence 3444444555666666655432 10 13445554432 222 489999999999664221 111000
Q ss_pred CCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeE-EEecCCc-eeEEEE
Q 039679 120 DDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASS-EQILSSR-YSRVLL 197 (230)
Q Consensus 120 ~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~-~Q~~~~k-~sR~Li 197 (230)
. -....+....-+.++++.+.++|++||+++++.|...... ........||.+.... ++...++ ..|.|+
T Consensus 143 --~-----~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~ 214 (259)
T 3lpm_A 143 --H-----FRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLD-IIDIMRKYRLEPKRIQFVHPRSDREANTVLV 214 (259)
T ss_dssp -----------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHH-HHHHHHHTTEEEEEEEEEESSTTSCCSEEEE
T ss_pred --H-----HHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHH-HHHHHHHCCCceEEEEEeecCCCCCcEEEEE
Confidence 0 0122345556678999999999999999999987654332 1223334588888766 6665555 678889
Q ss_pred EEEEc
Q 039679 198 TMVKI 202 (230)
Q Consensus 198 t~~K~ 202 (230)
...|.
T Consensus 215 ~~~k~ 219 (259)
T 3lpm_A 215 EGIKD 219 (259)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 88885
No 3
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.07 E-value=1.7e-06 Score=74.46 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=54.7
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|||||||....+.+.. . . .+ ....+.....+.++++.+.++|++||+++++.|......
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~-~----~------~~-----~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 177 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTP-D----A------LK-----AEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE 177 (260)
T ss_dssp TCEEEEEECCCC-------------------------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHH
T ss_pred CCcCEEEECCCCcCCCCCCCc-C----H------HH-----HHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHH
Confidence 379999999999876422110 0 0 00 001112222367899999999999999999998764322
Q ss_pred CCCCccccCCceeEeeE-EEecCCc-eeEEEEEEEEcC
Q 039679 168 TRNPFPEHLCFKLVASS-EQILSSR-YSRVLLTMVKIG 203 (230)
Q Consensus 168 ~~~~lp~h~gl~li~~~-~Q~~~~k-~sR~Lit~~K~~ 203 (230)
....+. . .|..+... +....++ ..|.|+...|..
T Consensus 178 ~~~~l~-~-~~~~~~i~~v~~~~~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 178 IIAACG-S-RFGGLEITLIHPRPGEDAVRMLVTAIKGS 213 (260)
T ss_dssp HHHHHT-T-TEEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred HHHHHH-h-cCCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence 111222 2 36655544 4444444 788899998854
No 4
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.94 E-value=6e-06 Score=68.45 Aligned_cols=101 Identities=22% Similarity=0.154 Sum_probs=57.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|+|||||..........+ . .... ...+.+ +.+..+++.+.++|++||++++.+|...+..
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~--~----------~~~~--~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 186 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTE--R----------EAIG--GGKYGE-EFSVKLLEEAFDHLNPGGKVALYLPDKEKLL 186 (230)
T ss_dssp SCEEEEEECCCCC-----------------------------CCSSSC-HHHHHHHHHHGGGEEEEEEEEEEEESCHHHH
T ss_pred CceeEEEECCCCcCCccccccCh--h----------hhhc--cCccch-HHHHHHHHHHHHHhCCCeEEEEEecccHhHH
Confidence 48999999999976544211000 0 0000 011233 4568899999999999999999998643111
Q ss_pred -CCCCccccCCceeEeeEEEecCCceeEEEEEEEEcCCC
Q 039679 168 -TRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVKIGLY 205 (230)
Q Consensus 168 -~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K~~~~ 205 (230)
.....-...||.+.. ++...+...++++.++|.++.
T Consensus 187 ~~~~~~l~~~g~~~~~--~~~~~g~~~~~~l~f~~~~~~ 223 (230)
T 3evz_A 187 NVIKERGIKLGYSVKD--IKFKVGTRWRHSLIFFKGISE 223 (230)
T ss_dssp HHHHHHHHHTTCEEEE--EEECCCC-CEEEEEEECCC--
T ss_pred HHHHHHHHHcCCceEE--EEecCCCeEEEEEEEeccccc
Confidence 111233455886554 355566677788999886653
No 5
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.93 E-value=3e-06 Score=76.97 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=71.8
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-H---HHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-A---YWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I---~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
+.-+++ +..+.+++++.+-.. + ......|....+... +.||.||||||||.|.+...
T Consensus 244 v~g~Di--s~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~---~~fD~Ii~npPyg~r~~~~~-------------- 304 (373)
T 3tm4_A 244 IIGIEK--YRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV---DSVDFAISNLPYGLKIGKKS-------------- 304 (373)
T ss_dssp EEEEES--CHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC---SCEEEEEEECCCC------C--------------
T ss_pred EEEEeC--CHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc---CCcCEEEECCCCCcccCcch--------------
Confidence 444454 445556666554332 2 013455666555433 37999999999999876521
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCc-eeEEEEEEE
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSR-YSRVLLTMV 200 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k-~sR~Lit~~ 200 (230)
.+.+++..+++.+.++| ||+++|+.+... . ....-...||++..... ..+++ .+|.+.+..
T Consensus 305 ------------~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~--~-~~~~~~~~G~~~~~~~~-~~nG~l~~~~~~~~~ 366 (373)
T 3tm4_A 305 ------------MIPDLYMKFFNELAKVL--EKRGVFITTEKK--A-IEEAIAENGFEIIHHRV-IGHGGLMVHLYVVKL 366 (373)
T ss_dssp ------------CHHHHHHHHHHHHHHHE--EEEEEEEESCHH--H-HHHHHHHTTEEEEEEEE-EEETTEEEEEEEEEE
T ss_pred ------------hHHHHHHHHHHHHHHHc--CCeEEEEECCHH--H-HHHHHHHcCCEEEEEEE-EEcCCEEEEEEeccC
Confidence 36778899999999988 899999977432 1 11222355888876543 33444 677666655
Q ss_pred EcC
Q 039679 201 KIG 203 (230)
Q Consensus 201 K~~ 203 (230)
+.+
T Consensus 367 ~~~ 369 (373)
T 3tm4_A 367 EHH 369 (373)
T ss_dssp TTC
T ss_pred ccC
Confidence 543
No 6
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.76 E-value=2.2e-05 Score=75.17 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=58.5
Q ss_pred EEecCCHHHHHHHHHHHHHHH-HHH---HHhhcCCCCCCCCCcccccceeEeCCCCccccccccccc-ccCCCCCCCCCC
Q 039679 48 FVNLPSEDIARSIANRIWITN-AYW---FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLK-GVLDPYTVPDDK 122 (230)
Q Consensus 48 vV~lp~e~~a~~l~~Rsil~~-I~~---ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~-~~~~~~~~~~~~ 122 (230)
+.-.+-+..+..+++..++.+ +-. +...|.-..++... +.||.|||+||||.+........ ..+..++.+. .
T Consensus 286 i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~--~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~-~ 362 (544)
T 3khk_A 286 VYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPD--LRADFVMTNPPFNMKDWWHEKLADDPRWTINTNG-E 362 (544)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTT--CCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC---
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccccc--ccccEEEECCCcCCccccchhhhhhhhhhcCccc-c
Confidence 444444556777777776666 310 13333333333222 37999999999998643321100 0000000000 0
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 123 RVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 123 ~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
....+|++....+ .+++.+.++|++|||+++++|..
T Consensus 363 ~~~~~~~~~~~~~-----~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 363 KRILTPPTGNANF-----AWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp CEECCCCTTCTHH-----HHHHHHHHTEEEEEEEEEEEETH
T ss_pred cccccCCCcchhH-----HHHHHHHHHhccCceEEEEecch
Confidence 0011444433222 48889999999999999999964
No 7
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.70 E-value=4.5e-05 Score=73.10 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=61.8
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH----HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY----WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPD 120 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~----~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~ 120 (230)
++=+++ +..+..+++..++.+ +- .+...|.-...|.....+.||+||++||||.+.+...... ..+ .
T Consensus 251 i~G~Ei--d~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~--~d~----r 322 (542)
T 3lkd_A 251 YFGQEL--NTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFM--DDP----R 322 (542)
T ss_dssp EEEEES--CHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGG--GST----T
T ss_pred EEEEEC--cHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhh--hhh----h
Confidence 444444 566788888887777 52 1344555555443222248999999999996543321100 000 0
Q ss_pred CCccCCCCCCCCcchHHHHHHHHHHHhhccc-cCCEEEEEEeec
Q 039679 121 DKRVGHIPSTAPYCLSECVHDLLDLAGRILV-MGGRLVYFYPVL 163 (230)
Q Consensus 121 ~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~-~gGRLvf~lP~~ 163 (230)
...-+.+|++..-.+ .++..+.++|+ +|||+++++|..
T Consensus 323 f~~~G~~~~~s~~~~-----~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 323 FSPFGKLAPKSKADF-----AFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp TGGGSSCCCTTCCHH-----HHHHHHHHTBCTTTCEEEEEEETH
T ss_pred hhhhhhcCCCchhhH-----HHHHHHHHHhCCCceeEEEEecch
Confidence 000111444432222 48899999999 999999999975
No 8
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=97.64 E-value=3.1e-05 Score=69.13 Aligned_cols=55 Identities=13% Similarity=0.258 Sum_probs=39.5
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.|+|||||+...+.. +. ....-+..+.+.+.|..+.++|++||.++++..-
T Consensus 32 ~svDlI~tDPPY~~~~~~~---------y~-----------~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 32 ESISLVMTSPPFALQRKKE---------YG-----------NLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SCEEEEEECCCCSSSCSCS---------SC-----------SCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCeeEEEECCCCCCCcccc---------cC-----------CcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 3799999999999753210 00 0112245667888999999999999999998653
No 9
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.55 E-value=6.1e-05 Score=66.16 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=36.8
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcc-hHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYC-LSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~-~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.|||||||.......... .... ....|+ ..+.+.+++..|.++|++||.++++.+-
T Consensus 39 ~s~DlIvtdPPY~~~~~y~~~~----------~~~~-----~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 39 ASVHLVVTSPPYWTLKRYEDTP----------GQLG-----HIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp TCEEEEEECCCCCCCC-----------------CCH-----HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceeEEEECCCCCCccccCCCh----------hhhc-----ccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4899999999997532111000 0000 000121 3345677889999999999999998763
No 10
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.50 E-value=8.2e-05 Score=68.27 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=65.3
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
++-+| .+..|.+++++.+-.. +- .+...|....+.. +.||.||||||||.|-|.+.
T Consensus 259 v~GvD--id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPYG~rl~~~~-------------- 318 (384)
T 3ldg_A 259 ISGFD--FDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPYGERLLDDK-------------- 318 (384)
T ss_dssp EEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCCTTTTSCHH--------------
T ss_pred EEEEE--CCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCchhhccCCHH--------------
Confidence 44445 4566777777766443 21 1344555554432 27899999999999866431
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
++.+++..+-+...+ -+||++.++.|.. .+..+-|++- .......||.+-=+|+.|
T Consensus 319 ------------~l~~ly~~lg~~lk~--~~g~~~~iit~~~-------~l~~~~g~~~-~~~~~l~nG~l~~~~~~~ 374 (384)
T 3ldg_A 319 ------------AVDILYNEMGETFAP--LKTWSQFILTNDT-------DFEQKFGRKA-DKKRKLYNGSLKVDLYQF 374 (384)
T ss_dssp ------------HHHHHHHHHHHHHTT--CTTSEEEEEESCT-------THHHHHTSCC-SEEEEEEETTEEEEEEEE
T ss_pred ------------HHHHHHHHHHHHHhh--CCCcEEEEEECCH-------HHHHHhCCCc-cceeEEecCCEEEEEEEE
Confidence 356677776666655 4699999986621 2334445442 223445555543334444
No 11
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=97.50 E-value=6.6e-05 Score=69.52 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=56.5
Q ss_pred CEEEEecCCHHHHHHHHHHHHHHH-HH----HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCC
Q 039679 45 PFHFVNLPSEDIARSIANRIWITN-AY----WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVP 119 (230)
Q Consensus 45 pf~vV~lp~e~~a~~l~~Rsil~~-I~----~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~ 119 (230)
.++=+++ +..+..+++..+..+ +- .+.+.|....++. +.||+||++||||......+.
T Consensus 210 ~i~G~Ei--~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~~~~~~----------- 272 (445)
T 2okc_A 210 ALHGVDN--TPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSVD----------- 272 (445)
T ss_dssp TEEEEES--CHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCCC-----------
T ss_pred EEEEEeC--CHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc----CCcCEEEECCCCCCcccccch-----------
Confidence 3555555 344666776666555 31 1233343333332 279999999999986554211
Q ss_pred CCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 120 DDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 120 ~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+.++..++ ......+++.+.++|++|||+++++|..
T Consensus 273 -~~~~~~~~~~-----~~~~~~fl~~~~~~Lk~gG~~a~V~p~~ 310 (445)
T 2okc_A 273 -INRPDFYVET-----KNNQLNFLQHMMLMLKTGGRAAVVLPDN 310 (445)
T ss_dssp -CCCTTSSSCC-----SCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred -hhHhhcCCCC-----cchHHHHHHHHHHHhccCCEEEEEECCc
Confidence 0111111111 1123468899999999999999999964
No 12
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.45 E-value=9.8e-05 Score=66.71 Aligned_cols=110 Identities=23% Similarity=0.244 Sum_probs=57.1
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCC-CCCcchHHHHHHHHHHHhhccccCCEEEEEEeecc--
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPS-TAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR-- 164 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~-~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~-- 164 (230)
+.||.|||+|||+........... ...+.+..+-+. ....+-.+++..+++.+.++|++||++++++|...
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~ 170 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIH------VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV 170 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBC------CCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT
T ss_pred CCCCEEEECcCccCcccccccccc------cCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhc
Confidence 479999999999976542110000 000000000000 00011245677899999999999999999999752
Q ss_pred CCCC--CCCccccCCceeEeeEEEecCCc-eeEEEEEEEEcC
Q 039679 165 EDST--RNPFPEHLCFKLVASSEQILSSR-YSRVLLTMVKIG 203 (230)
Q Consensus 165 ~~~~--~~~lp~h~gl~li~~~~Q~~~~k-~sR~Lit~~K~~ 203 (230)
.... ..+.-...|+..+....+.+.+. ..+.++.++|..
T Consensus 171 ~~~~~~lr~~l~~~~~~~i~~l~~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 171 LEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp CGGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred CccHHHHHHHHHhcCCeEEEECCCCCCCCCccEEEEEEEeCC
Confidence 1110 11111223442222222334332 678888887754
No 13
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=97.44 E-value=0.00013 Score=65.38 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=38.2
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.||.|+|||||+...+.-+ ..-+..+.+...|..+.++|++||.++++...
T Consensus 58 svDlI~tDPPY~~~~d~~~-----------------------~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 58 SVQLIICDPPYNIMLADWD-----------------------DHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp CEEEEEECCCSBCCGGGGG-----------------------TCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CcCEEEECCCCCCCCCCcc-----------------------CHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 7999999999998521100 01245667888899999999999999888653
No 14
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.35 E-value=3.1e-05 Score=77.54 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=42.8
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+.||.|||+||||................. ......| ...++..+++..+++.|.++|++|||++|++|...
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~----~g~p~~p-~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKII----QLTGNRP-QTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHH----HHHSSCC-SSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhh----hhccccc-cccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 479999999999864332110000000000 0000011 12223345778899999999999999999999753
No 15
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.31 E-value=0.00013 Score=58.70 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=50.1
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCC---CCcchHHHHHHHHHHHhhccccCCE-EEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPST---APYCLSECVHDLLDLAGRILVMGGR-LVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~---~~y~~~~~~~dLL~~Aa~~L~~gGR-Lvf~lP~~ 163 (230)
+.||+|+|||||............. ..|-|.. ....-.+.+..+++.+.++|++||+ +++..|..
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 168 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSV-----------RDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN 168 (215)
T ss_dssp CCBSEEEECCCCCC-----------------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS
T ss_pred CcccEEEECCCCCCCccccccChhh-----------hccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc
Confidence 4899999999997655432211100 0000100 0111235668899999999999999 66666643
Q ss_pred cCCCCCCCccc--cCCceeEeeEEEecCCceeEEEEEEE
Q 039679 164 REDSTRNPFPE--HLCFKLVASSEQILSSRYSRVLLTMV 200 (230)
Q Consensus 164 ~~~~~~~~lp~--h~gl~li~~~~Q~~~~k~sR~Lit~~ 200 (230)
..+. ...+-. ..||..+. ..+...+ ..|.++...
T Consensus 169 ~~~~-~~~~l~~~~~gf~~~~-~~~~~~~-~~r~~~~~~ 204 (215)
T 4dzr_A 169 QADE-VARLFAPWRERGFRVR-KVKDLRG-IDRVIAVTR 204 (215)
T ss_dssp CHHH-HHHHTGGGGGGTEECC-EEECTTS-CEEEEEEEE
T ss_pred cHHH-HHHHHHHhhcCCceEE-EEEecCC-CEEEEEEEE
Confidence 2222 122333 45776554 3444543 355444433
No 16
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.31 E-value=0.00013 Score=62.81 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=46.5
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|+|||||+..... - . ++ ...-+..+.+.++|..+.++|++||.++++.-......
T Consensus 22 ~~vdlI~~DPPY~~~~~~--~-----d----------~~---~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~ 81 (260)
T 1g60_A 22 KSVQLAVIDPPYNLSKAD--W-----D----------SF---DSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAF 81 (260)
T ss_dssp TCEEEEEECCCCSSCSSG--G-----G----------CC---SSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHH
T ss_pred cccCEEEECCCCCCCccc--c-----c----------cc---CCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHH
Confidence 379999999999863110 0 0 00 01123456788899999999999999988742221111
Q ss_pred CCCCccccCCceeEeeE
Q 039679 168 TRNPFPEHLCFKLVASS 184 (230)
Q Consensus 168 ~~~~lp~h~gl~li~~~ 184 (230)
...+....||.++...
T Consensus 82 -~~~~~~~~gf~~~~~i 97 (260)
T 1g60_A 82 -ICQYLVSKGMIFQNWI 97 (260)
T ss_dssp -HHHHHHHTTCEEEEEE
T ss_pred -HHHHHHhhccceeEEE
Confidence 1112234578777665
No 17
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.30 E-value=0.00011 Score=67.56 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=53.0
Q ss_pred EEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCc
Q 039679 48 FVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKR 123 (230)
Q Consensus 48 vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~ 123 (230)
++-++.+..|..++++.+-.. +- .+...|....+.. +.||.||||||||.|.+.+.
T Consensus 266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPYg~rl~~~~---------------- 325 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPYGERLEDEE---------------- 325 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCCCCSHHHHH----------------
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCCccccCCch----------------
Confidence 444444666777777766443 21 1344555544332 37999999999999976532
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEe
Q 039679 124 VGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 124 ~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.+.+++..|-+.... -+||++.++.+
T Consensus 326 ----------~l~~ly~~lg~~lk~--~~g~~~~iit~ 351 (393)
T 3k0b_A 326 ----------AVRQLYREMGIVYKR--MPTWSVYVLTS 351 (393)
T ss_dssp ----------HHHHHHHHHHHHHHT--CTTCEEEEEEC
T ss_pred ----------hHHHHHHHHHHHHhc--CCCCEEEEEEC
Confidence 366677777666665 46999998855
No 18
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.27 E-value=0.00086 Score=65.96 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=67.9
Q ss_pred EEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCC--CCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 48 FVNLPSEDIARSIANRIWITN-AY---WFAKADNNLP--PWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 48 vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~--p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
++-.+-+..|.+++++.+... +- .+...|.... |... +.||.||||||||.|-|.+.
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~---~~~d~Iv~NPPYG~Rlg~~~-------------- 321 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPK---GPYGTVLSNPPYGERLDSEP-------------- 321 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTT---CCCCEEEECCCCCC---CCH--------------
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccccc---CCCCEEEeCCCccccccchh--------------
Confidence 334444666777777776554 31 1344455432 2222 26899999999999876532
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEEEE
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVK 201 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K 201 (230)
.+.+++..|-+ ..+.+.+||+++++.|.. .+..+-|++. .......||.+-=+|+.|+-
T Consensus 322 ------------~l~~ly~~l~~-~lk~~~~g~~~~ilt~~~-------~l~~~~glk~-~k~~~l~nG~l~~~~~~y~~ 380 (703)
T 3v97_A 322 ------------ALIALHSLLGR-IMKNQFGGWNLSLFSASP-------DLLSCLQLRA-DKQYKAKNGPLDCVQKNYHV 380 (703)
T ss_dssp ------------HHHHHHHHHHH-HHHHHCTTCEEEEEESCH-------HHHHTTCCCE-EEEEEEEETTEEEEEEEEEC
T ss_pred ------------HHHHHHHHHHH-HHHhhCCCCeEEEEeCCH-------HHHHHhCCCc-ccceeeecCCEEEEEEEEEe
Confidence 35666776544 344456899999996632 2445556663 34466667775555777764
No 19
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.22 E-value=0.00013 Score=65.07 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=54.1
Q ss_pred EecCCHHHHHHHHHHHHHHH-HH-HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCC
Q 039679 49 VNLPSEDIARSIANRIWITN-AY-WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGH 126 (230)
Q Consensus 49 V~lp~e~~a~~l~~Rsil~~-I~-~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ 126 (230)
+-.+-+..+..+++..+..+ +- .+...|... +.. .+.||.||++||||.-...... . .|
T Consensus 163 ~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~---~~~fD~Ii~NPPfg~~~~~~~~-----~----------~~ 223 (344)
T 2f8l_A 163 SGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLL---VDPVDVVISDLPVGYYPDDENA-----K----------TF 223 (344)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCC---CCCEEEEEEECCCSEESCHHHH-----T----------TS
T ss_pred EEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccc---cCCccEEEECCCCCCcCchhhh-----h----------hc
Confidence 33333555667777666554 21 123333322 222 2379999999999863221100 0 00
Q ss_pred CCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 127 IPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 127 ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
-| ..+.+.......+++.+.++|++||+++|++|..
T Consensus 224 ~~-~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 224 EL-CREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp TT-CCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred cc-cCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 01 0111233344568999999999999999999864
No 20
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.17 E-value=5.6e-05 Score=71.20 Aligned_cols=83 Identities=27% Similarity=0.319 Sum_probs=47.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|++||||.--...++. +... .+..+...-.+.++..++|+.|.++|++||+|+|---+...+.
T Consensus 169 ~~FD~Il~D~PcSg~G~~rr~------pd~~------~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eE 236 (464)
T 3m6w_A 169 TYFHRVLLDAPCSGEGMFRKD------REAA------RHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEE 236 (464)
T ss_dssp SCEEEEEEECCCCCGGGTTTC------TTSG------GGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGG
T ss_pred ccCCEEEECCCcCCccccccC------hHHh------hhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhc
Confidence 479999999999421111211 1000 0000111224566778999999999999999998643332222
Q ss_pred CC----CCccccCCceeEe
Q 039679 168 TR----NPFPEHLCFKLVA 182 (230)
Q Consensus 168 ~~----~~lp~h~gl~li~ 182 (230)
.+ .-+..|++|+++.
T Consensus 237 ne~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 237 NEGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp THHHHHHHHHHCTTEEEEC
T ss_pred CHHHHHHHHHHCCCcEEEe
Confidence 22 2334577777764
No 21
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.15 E-value=0.00031 Score=67.09 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=38.5
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||+||++||||...... . +.++-.++. .....+++.+.++|++|||++|++|..
T Consensus 260 ~~fD~Vv~NPPf~~~~~~~-~--------------~~~~~~~~~-----~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 260 PKAHIVATNPPFGSAAGTN-I--------------TRTFVHPTS-----NKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp CCEEEEEECCCCTTCSSCC-C--------------CSCCSSCCS-----CHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cCCeEEEECCCcccccchh-h--------------HhhcCCCCC-----chHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 3799999999999865542 0 011111111 112357899999999999999999965
No 22
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.09 E-value=0.00011 Score=65.40 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=47.2
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEE----EEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVY----FYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf----~lP~~ 163 (230)
+.||.|++||||.--...++. ++. .......+.....+..+..++|+.|.++|+ ||+||| +.|..
T Consensus 173 ~~fD~Vl~D~PcSg~G~~~r~------pd~----~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~E 241 (309)
T 2b9e_A 173 HEVHYILLDPSCSGSGMPSRQ------LEE----PGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEE 241 (309)
T ss_dssp TTEEEEEECCCCCC----------------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGG
T ss_pred CCCCEEEEcCCcCCCCCCccC------CCh----hhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHH
Confidence 369999999999421111211 000 000001112234577778899999999987 999998 45544
Q ss_pred cCCCCCCCccccCC-ceeEe
Q 039679 164 REDSTRNPFPEHLC-FKLVA 182 (230)
Q Consensus 164 ~~~~~~~~lp~h~g-l~li~ 182 (230)
+++....-+..|++ |+++.
T Consensus 242 ne~~v~~~l~~~~~~~~~~~ 261 (309)
T 2b9e_A 242 NEDVVRDALQQNPGAFRLAP 261 (309)
T ss_dssp THHHHHHHHTTSTTTEEECC
T ss_pred hHHHHHHHHHhCCCcEEEec
Confidence 43332234567888 87764
No 23
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.08 E-value=0.00046 Score=63.10 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=66.5
Q ss_pred EEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCc
Q 039679 48 FVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKR 123 (230)
Q Consensus 48 vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~ 123 (230)
++-.+.+..|..++++.+-.. +- .....|....+.. +.||.||||||||.|-+.+.
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPyg~rl~~~~---------------- 319 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPYGERLEDKD---------------- 319 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCCCCSHHHHH----------------
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCCcCccCCHH----------------
Confidence 444444666778887776554 31 1244555543332 37899999999999876532
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEEE
Q 039679 124 VGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMV 200 (230)
Q Consensus 124 ~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~ 200 (230)
++.+++..+-+.... -+||++.++.+.. .+..+-|++. .....-.|+.+-=+|+.|.
T Consensus 320 ----------~l~~ly~~lg~~lk~--~~g~~~~iit~~~-------~l~~~~g~~~-~~~~~l~nG~l~~~~~~~~ 376 (385)
T 3ldu_A 320 ----------SVKQLYKELGYAFRK--LKNWSYYLITSYE-------DFEYEFGQKA-DKKRKLYNGMLKTNFFQYP 376 (385)
T ss_dssp ----------HHHHHHHHHHHHHHT--SBSCEEEEEESCT-------THHHHHTSCC-SEEEEEEETTEEEEEEEEC
T ss_pred ----------HHHHHHHHHHHHHhh--CCCCEEEEEECCH-------HHHHhhCCCc-ccceEEecCCEEEEEEEEE
Confidence 356677776655554 4699998885521 2334445542 2334555666544455554
No 24
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=96.96 E-value=0.00082 Score=56.57 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=36.0
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEe
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.||.|||+|||+....... -.-.+.+..+++.+.++|++||+|++ .+
T Consensus 168 ~fD~Iv~npp~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~LkpgG~l~~-~~ 214 (250)
T 1o9g_A 168 APDVVLTDLPYGERTHWEG-------------------------QVPGQPVAGLLRSLASALPAHAVIAV-TD 214 (250)
T ss_dssp CCSEEEEECCGGGSSSSSS-------------------------CCCHHHHHHHHHHHHHHSCTTCEEEE-EE
T ss_pred CceEEEeCCCeeccccccc-------------------------cccccHHHHHHHHHHHhcCCCcEEEE-eC
Confidence 7999999999987443210 02345678899999999999999998 44
No 25
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.90 E-value=0.00028 Score=67.21 Aligned_cols=16 Identities=31% Similarity=0.794 Sum_probs=13.6
Q ss_pred cccceeEeCCCCcccc
Q 039679 88 EVFDAIICDPPYGVRA 103 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa 103 (230)
..||.||++||||...
T Consensus 301 ~~fD~Il~NPPf~~~~ 316 (530)
T 3ufb_A 301 DRVDVILTNPPFGGEE 316 (530)
T ss_dssp GCBSEEEECCCSSCBC
T ss_pred ccceEEEecCCCCccc
Confidence 4799999999999653
No 26
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.83 E-value=0.00019 Score=66.05 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=50.0
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|++||||.--...++..... + ...+...-.+.++...+|+.+.++|++||+|+|.-.+...+.
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~---~---------~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~e 381 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIK---W---------LRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE 381 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHH---H---------HCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGG
T ss_pred CCCCEEEEeCCCCcccccCCCcchh---h---------cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh
Confidence 3799999999996432222210000 0 000011224556678999999999999999999754332222
Q ss_pred CC----CCccccCCceeEe
Q 039679 168 TR----NPFPEHLCFKLVA 182 (230)
Q Consensus 168 ~~----~~lp~h~gl~li~ 182 (230)
.+ .-+..|++|.++.
T Consensus 382 ne~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 382 NSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp THHHHHHHHHHCTTCEECS
T ss_pred HHHHHHHHHHhCCCCEEeC
Confidence 12 2355788998876
No 27
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.00014 Score=67.49 Aligned_cols=83 Identities=27% Similarity=0.298 Sum_probs=48.8
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
+.||.|++|||+.--...++. ++... ...+..-..+.++...+|+.+.++|++||+|+|.-.+...+.
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~------pd~~~------~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~e 396 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKN------PELRW------RLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEE 396 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTS------TTHHH------HCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGG
T ss_pred CCCCEEEEcCCCCCCeeeccC------hhhhh------hCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 379999999999432222211 00000 000111223455567899999999999999999755543222
Q ss_pred CC----CCccccCCceeEe
Q 039679 168 TR----NPFPEHLCFKLVA 182 (230)
Q Consensus 168 ~~----~~lp~h~gl~li~ 182 (230)
.+ .-+..|++|.++.
T Consensus 397 ne~~v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 397 NEKNIRWFLNVHPEFKLVP 415 (450)
T ss_dssp THHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHHHHhCCCCEEee
Confidence 22 2345688888765
No 28
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.82 E-value=0.002 Score=56.15 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=32.8
Q ss_pred HHHHHHh-hccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEEEE
Q 039679 141 DLLDLAG-RILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVK 201 (230)
Q Consensus 141 dLL~~Aa-~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K 201 (230)
+++.... +.|++||++++-.+....+.....+..+ ...+.+++ ..|.++...|
T Consensus 229 ~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~-------~~~~D~~g-~~R~~~~~~k 282 (284)
T 1nv8_A 229 DFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT-------VFLKDSAG-KYRFLLLNRR 282 (284)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC-------EEEECTTS-SEEEEEEECC
T ss_pred HHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC-------CeecccCC-CceEEEEEEc
Confidence 4666667 8999999999987654332222222222 66788874 4676665544
No 29
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.79 E-value=0.00069 Score=58.08 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=55.1
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcc---hHHHHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYC---LSECVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~---~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+.||.||++|||.-.... .... ....|.|..+-+. -.+.+..+++.+.++|++||++++..+...
T Consensus 175 ~~fD~Iv~npPy~~~~~~-~l~~-----------~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 242 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDP-HLQQ-----------GDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ 242 (276)
T ss_dssp CCEEEEEECCCCBCTTCH-HHHS-----------SGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC
T ss_pred CCccEEEECCCCCCcccc-ccCh-----------hhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchH
Confidence 479999999999754331 1100 0011333333221 124678899999999999999999866543
Q ss_pred CCCCCCCccccCCceeEeeEEEecCCceeEEEE
Q 039679 165 EDSTRNPFPEHLCFKLVASSEQILSSRYSRVLL 197 (230)
Q Consensus 165 ~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Li 197 (230)
.+.. ..+-...||..+. ..+.++ +..|.++
T Consensus 243 ~~~~-~~~l~~~Gf~~v~-~~~d~~-g~~r~~~ 272 (276)
T 2b3t_A 243 GEAV-RQAFILAGYHDVE-TCRDYG-DNERVTL 272 (276)
T ss_dssp HHHH-HHHHHHTTCTTCC-EEECTT-SSEEEEE
T ss_pred HHHH-HHHHHHCCCcEEE-EEecCC-CCCcEEE
Confidence 2221 1223345887653 455665 3456443
No 30
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=96.71 E-value=6.3e-05 Score=65.07 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCC----CccccCCceeEee
Q 039679 136 SECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRN----PFPEHLCFKLVAS 183 (230)
Q Consensus 136 ~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~----~lp~h~gl~li~~ 183 (230)
.+....+|+.|.++|++||+|+|.-.+...+..+. -+..|++|+++..
T Consensus 187 ~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 187 SLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp GTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEecC
Confidence 34567899999999999999999766554333221 2346888888754
No 31
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.41 E-value=0.0023 Score=58.22 Aligned_cols=47 Identities=26% Similarity=0.368 Sum_probs=33.9
Q ss_pred ccceeEeCCCC-cccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEe
Q 039679 89 VFDAIICDPPY-GVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 89 ~~DaIvtDPPY-GiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.||.||+|||| +...+. -....+.+.+++..|.++|+|||.|++-..
T Consensus 285 ~fD~Ii~DPP~~~~~~~~--------------------------~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 285 TYDIIIIDPPSFARNKKE--------------------------VFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp CEEEEEECCCCC-----C--------------------------CCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCCCCCCChhh--------------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 79999999999 432111 113556678899999999999999977643
No 32
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.39 E-value=0.0049 Score=49.33 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=32.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhh--ccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGR--ILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~--~L~~gGRLvf~lP~~ 163 (230)
+.||.|++||||+... +.+..++..+.+ +|+|||++++-.+..
T Consensus 112 ~~fD~i~~~~p~~~~~---------------------------------~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 112 SPVDLVLADPPYNVDS---------------------------------ADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp SCCSEEEECCCTTSCH---------------------------------HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCccEEEECCCCCcch---------------------------------hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 4899999999998621 124556777777 999999999987654
No 33
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.30 E-value=0.0018 Score=60.97 Aligned_cols=64 Identities=31% Similarity=0.374 Sum_probs=38.8
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|++||||.--...++. ++.. .+..+.....+.++..++|..|.++|++||+|||.--+.
T Consensus 186 ~~fD~Il~D~PcSg~G~~~~~------pd~~------~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 186 EMFDAILLDAPCSGEGVVRKD------PDAL------KNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp TCEEEEEEECCCCCGGGGGTC------TTSS------SSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccCCEEEECCCcCCcccccCC------HHHH------hhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 479999999999421111211 1000 000001122455667899999999999999999964443
No 34
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=96.19 E-value=0.0044 Score=55.40 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=36.5
Q ss_pred cccceeEeCCCC-cccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPY-GVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPY-GiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.||+|||| |..... .-+...+.+.+++..+.++|++||.+++.....
T Consensus 224 ~~fD~Ii~dPP~~~~~~~~-------------------------~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 224 STYDIILTDPPKFGRGTHG-------------------------EVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp CCBSEEEECCCSEEECTTC-------------------------CEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CCceEEEECCccccCCchH-------------------------HHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 379999999995 653111 012345567889999999999999977665543
No 35
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=96.04 E-value=0.0045 Score=55.76 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=34.4
Q ss_pred HHhhcCCC-CCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 039679 72 FAKADNNL-PPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRIL 150 (230)
Q Consensus 72 ll~~D~t~-~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L 150 (230)
.+.+|... -|.. ..+.||.||+||||+... +..++..+.++|
T Consensus 225 ~~~~D~~~~l~~~--~~~~fD~Vi~~~p~~~~~-----------------------------------~~~~l~~~~~~L 267 (373)
T 2qm3_A 225 IFTFDLRKPLPDY--ALHKFDTFITDPPETLEA-----------------------------------IRAFVGRGIATL 267 (373)
T ss_dssp EECCCTTSCCCTT--TSSCBSEEEECCCSSHHH-----------------------------------HHHHHHHHHHTB
T ss_pred EEEChhhhhchhh--ccCCccEEEECCCCchHH-----------------------------------HHHHHHHHHHHc
Confidence 34566655 2221 123799999999998630 256888999999
Q ss_pred ccCCEEEE
Q 039679 151 VMGGRLVY 158 (230)
Q Consensus 151 ~~gGRLvf 158 (230)
++|||+++
T Consensus 268 kpgG~~~~ 275 (373)
T 2qm3_A 268 KGPRCAGY 275 (373)
T ss_dssp CSTTCEEE
T ss_pred ccCCeEEE
Confidence 99997633
No 36
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=95.94 E-value=0.0054 Score=55.67 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=32.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|+|||||....... ......++..+.++|++||+++++.+..
T Consensus 291 ~~fD~Ii~nppfh~~~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALT-----------------------------DNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp TCEEEEEECCCC------------------------------------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred CCeeEEEECCCcccCcccC-----------------------------HHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 3899999999997622110 0123578999999999999999987654
No 37
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=95.86 E-value=0.0079 Score=46.50 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=29.8
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.||.|++||||+ +. ..+++..+.+ .++|++||++++-.+..
T Consensus 110 ~~D~i~~~~~~~---~~-----------------------------~~~~~~~~~~--~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 110 RFTVAFMAPPYA---MD-----------------------------LAALFGELLA--SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CEEEEEECCCTT---SC-----------------------------TTHHHHHHHH--HTCEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCc---hh-----------------------------HHHHHHHHHh--hcccCCCcEEEEEeCCc
Confidence 699999999998 11 1123444444 69999999999887754
No 38
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=95.69 E-value=0.0077 Score=54.53 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=36.5
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.||+||||..+.... -.....-+.+++..+.++|++||+|++.-..
T Consensus 288 ~~fD~Vi~dpP~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 288 EKFDIVVLDPPAFVQHEKD-------------------------LKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCEEEEEECCCCSCSSGGG-------------------------HHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCCHHH-------------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3799999999986532210 1123355678999999999999999988554
No 39
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=95.62 E-value=0.0075 Score=54.46 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=36.7
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.||+||||-.+... .-......+.+++..+.++|++||+|++.-..
T Consensus 278 ~~fD~Ii~dpP~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 278 ERFDLVVLDPPAFAKGKK-------------------------DVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCEEEEEECCCCSCCSTT-------------------------SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECCCCCCCChh-------------------------HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 379999999998442111 01234556788999999999999999888554
No 40
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.53 E-value=0.0032 Score=59.06 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.|++|||+.--...++...... ...+...-.+.++..++|+.|.++|++||+|+|--=+
T Consensus 174 ~~FD~Il~DaPCSg~G~~rr~p~~~~------------~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEGMFRKDPNAIK------------EWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp TCEEEEEEECCCCCGGGTTTCHHHHH------------HCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred ccCCEEEECCCCCCccccccCHHHhh------------hcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 47999999999742111121100000 0000112245667779999999999999999986433
No 41
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.51 E-value=0.018 Score=45.67 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=51.6
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
+.+|... ++.. +.||+|+|+|||........ +.. .-...+++. ...+.| +
T Consensus 66 ~~~d~~~-~~~~---~~fD~i~~n~~~~~~~~~~~------------------~~~---~~~~~~~~~----~~~~~l-p 115 (170)
T 3q87_B 66 VRADLLC-SINQ---ESVDVVVFNPPYVPDTDDPI------------------IGG---GYLGREVID----RFVDAV-T 115 (170)
T ss_dssp EECSTTT-TBCG---GGCSEEEECCCCBTTCCCTT------------------TBC---CGGGCHHHH----HHHHHC-C
T ss_pred EECChhh-hccc---CCCCEEEECCCCccCCcccc------------------ccC---CcchHHHHH----HHHhhC-C
Confidence 4555554 4433 48999999999986332210 000 001122333 333444 9
Q ss_pred CCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 153 GGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 153 gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
||++++..+..........+-...||..+........ .-|.....
T Consensus 116 gG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 116 VGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp SSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred CCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 9999998876543321223445668888776655543 44544433
No 42
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=95.44 E-value=0.013 Score=47.86 Aligned_cols=17 Identities=6% Similarity=-0.269 Sum_probs=14.4
Q ss_pred hhccccCCEEEEEEeec
Q 039679 147 GRILVMGGRLVYFYPVL 163 (230)
Q Consensus 147 a~~L~~gGRLvf~lP~~ 163 (230)
.++|+|||++++..+..
T Consensus 150 ~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 150 NNWLKPNALIYVETEKD 166 (201)
T ss_dssp TTCEEEEEEEEEEEESS
T ss_pred cCccCCCcEEEEEECCC
Confidence 78899999999887654
No 43
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=95.43 E-value=0.0088 Score=47.04 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=30.6
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|++||||+... ..+.+..+ .+.++|++||++++..|..
T Consensus 115 ~~fD~i~~~~~~~~~~-------------------------------~~~~~~~l--~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 115 LQFDLVLLDPPYAKQE-------------------------------IVSQLEKM--LERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CCEEEEEECCCGGGCC-------------------------------HHHHHHHH--HHTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEECCCCCchh-------------------------------HHHHHHHH--HHhcccCCCCEEEEEeCCc
Confidence 3799999999997311 12223333 2489999999999988765
No 44
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=95.39 E-value=0.011 Score=58.17 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=37.7
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.||.||+||||-.+.... ...+.....+.+++..|.++|+|||+|++-...
T Consensus 608 ~~fD~Ii~DPP~f~~~~~~-----------------------~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 608 EQFDLIFIDPPTFSNSKRM-----------------------EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCEEEEEECCCSBC------------------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCccEEEECCccccCCccc-----------------------hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4799999999985432210 012356678899999999999999999977554
No 45
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.37 E-value=0.0043 Score=56.46 Aligned_cols=34 Identities=24% Similarity=0.099 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHhhccccCCEEEEEEeeccCCC
Q 039679 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDS 167 (230)
Q Consensus 134 ~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~ 167 (230)
.+..+-..||+.|.++|+|||+|||--=+...++
T Consensus 258 ~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~E 291 (359)
T 4fzv_A 258 ILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQ 291 (359)
T ss_dssp THHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhh
Confidence 3566778999999999999999999844443333
No 46
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=95.29 E-value=0.01 Score=51.22 Aligned_cols=75 Identities=16% Similarity=0.083 Sum_probs=49.7
Q ss_pred EEEecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCC
Q 039679 47 HFVNLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDK 122 (230)
Q Consensus 47 ~vV~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~ 122 (230)
-++-++-...|.+.+++.+-.. +- ..+.+|....+. .+.||.|++|||++.
T Consensus 150 ~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~Vi~~~p~~~--------------------- 204 (278)
T 2frn_A 150 KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRILMGYVVRT--------------------- 204 (278)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEEEECCCSSG---------------------
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccEEEECCchhH---------------------
Confidence 3555554555666666654432 21 134556655443 248999999999765
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 123 RVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 123 ~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.++|++||++++.-...
T Consensus 205 -----------------~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 205 -----------------HEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp -----------------GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -----------------HHHHHHHHHHCCCCeEEEEEEeec
Confidence 125778899999999999987664
No 47
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=95.29 E-value=0.011 Score=46.41 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=30.0
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.||+|++||||+.. ...+++..+.+ .++|++||++++..+..
T Consensus 100 ~fD~i~~~~~~~~~-------------------------------~~~~~~~~l~~--~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAKE-------------------------------TIVATIEALAA--KNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHHH-------------------------------HHHHHHHHHHH--TTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCcc-------------------------------hHHHHHHHHHh--CCCcCCCcEEEEEECCc
Confidence 69999999999631 11233444433 69999999999987764
No 48
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=95.27 E-value=0.012 Score=53.88 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=35.0
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.||.||+||||=.+.. +. -......+.+++..|.++|++||+|++.--.
T Consensus 280 ~fD~Ii~dpP~f~~~~--~~-----------------------~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 280 PFHHVLLDPPTLVKRP--EE-----------------------LPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CEEEEEECCCCCCSSG--GG-----------------------HHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCEEEECCCcCCCCH--HH-----------------------HHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 4999999999832111 00 1234556788999999999999999977443
No 49
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=95.24 E-value=0.014 Score=53.24 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=51.9
Q ss_pred EEecCCHHHHHHHHHHHHHHH-H-HHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccC
Q 039679 48 FVNLPSEDIARSIANRIWITN-A-YWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVG 125 (230)
Q Consensus 48 vV~lp~e~~a~~l~~Rsil~~-I-~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~ 125 (230)
++-++-+..+...+++.+-.. + ...+..|....+... +.||.|||||||..-..
T Consensus 258 V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~---~~fD~Ii~npp~~~~~~--------------------- 313 (381)
T 3dmg_A 258 VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE---ARFDIIVTNPPFHVGGA--------------------- 313 (381)
T ss_dssp EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTT---CCEEEEEECCCCCTTCS---------------------
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccC---CCeEEEEECCchhhccc---------------------
Confidence 333333455666666554322 1 013455655544432 38999999999964110
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 126 HIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 126 ~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+....++..+.++|++||+++++.+..
T Consensus 314 --------~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 314 --------VILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp --------SCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred --------ccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 012356788999999999999999986543
No 50
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=95.00 E-value=0.025 Score=48.05 Aligned_cols=65 Identities=23% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCCC--CccccCCceeEeeEEEecCC-ceeEEEEEEEEcCC
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTRN--PFPEHLCFKLVASSEQILSS-RYSRVLLTMVKIGL 204 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~--~lp~h~gl~li~~~~Q~~~~-k~sR~Lit~~K~~~ 204 (230)
.++++.+.++|++||+++++-.....+.... .....-|++++....-.+.+ .-.|.|+.++|..+
T Consensus 164 ~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~ 231 (249)
T 3g89_A 164 CVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAP 231 (249)
T ss_dssp HHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCC
Confidence 6789999999999999998864322111111 11123488888776334443 36899999999654
No 51
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=95.00 E-value=0.022 Score=44.52 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=34.6
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||+|+++|||.. + .+....+++.+.++|++||++++..|..
T Consensus 118 ~~~D~v~~~~~~~~--~-------------------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 118 RKYNKIITNPPIRA--G-------------------------------KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp SCEEEEEECCCSTT--C-------------------------------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CCceEEEECCCccc--c-------------------------------hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 37999999999863 0 1134678899999999999999998875
No 52
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=94.89 E-value=0.015 Score=47.45 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEE
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
..++....|+.|.++|+|||++++-+
T Consensus 114 ~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 114 SYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 34567889999999999999998654
No 53
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=94.86 E-value=0.015 Score=52.60 Aligned_cols=48 Identities=33% Similarity=0.380 Sum_probs=33.9
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEE
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+.||.||+||||..+... . -.....-+.+++..+.++|++||.+++.-
T Consensus 292 ~~fD~Ii~dpP~~~~~~~--~-----------------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 292 EKFDVIVMDPPKFVENKS--Q-----------------------LMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp CCEEEEEECCSSTTTCSS--S-----------------------SSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCChh--H-----------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 379999999998653221 0 01122346788899999999999998764
No 54
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=94.78 E-value=0.031 Score=45.52 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=29.0
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|++||||.. + ...+++..+.+ .++|++||++++.....
T Consensus 121 ~~fD~V~~~~p~~~--~-----------------------------~~~~~l~~l~~--~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 121 TPHNIVFVDPPFRR--G-----------------------------LLEETINLLED--NGWLADEALIYVESEVE 163 (202)
T ss_dssp CCEEEEEECCSSST--T-----------------------------THHHHHHHHHH--TTCEEEEEEEEEEEEGG
T ss_pred CCCCEEEECCCCCC--C-----------------------------cHHHHHHHHHh--cCccCCCcEEEEEECCC
Confidence 37999999999962 1 01223333322 46799999999887654
No 55
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=94.71 E-value=0.024 Score=50.27 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=35.3
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|||+|||.- +.+ .-.+....++..+.++|+|||+++++.+..
T Consensus 260 ~~fD~Iv~~~~~~~--g~~---------------------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 260 GRFDMIISNPPFHD--GMQ---------------------------TSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SCEEEEEECCCCCS--SSH---------------------------HHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CCeeEEEECCCccc--Ccc---------------------------CCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 48999999999853 100 012345788999999999999999987754
No 56
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=94.69 E-value=0.0094 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.292 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhhccccCCEEEEEE
Q 039679 135 LSECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 135 ~~~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+.++...+|+.+.++|++||+|+|.-
T Consensus 221 ~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 221 CQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 44556799999999999999999953
No 57
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=94.38 E-value=0.03 Score=44.63 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeeccCCCCC---------CCccccCCceeEeeEEEecCCc-eeEEEEEEEEcCCC
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLREDSTR---------NPFPEHLCFKLVASSEQILSSR-YSRVLLTMVKIGLY 205 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~---------~~lp~h~gl~li~~~~Q~~~~k-~sR~Lit~~K~~~~ 205 (230)
....++..+.++|++||++++........... ..++ ..+|.++. .+.++.. -.-.++..+|.++.
T Consensus 117 ~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~~--~~~~~~~~~pp~~~~~~~~~~~ 191 (197)
T 3eey_A 117 TTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD-QKKFIVQR--TDFINQANCPPILVCIEKISEG 191 (197)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSC-TTTEEEEE--EEETTCCSCCCEEEEEEECCSS
T ss_pred cHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCC-CCcEEEEE--EEeccCccCCCeEEEEEEcccc
Confidence 34568999999999999999886443211100 1122 23566654 4555542 34456666766653
No 58
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=93.94 E-value=0.04 Score=42.01 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
++...+++.+.++|++||++++..+..
T Consensus 113 ~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 113 YLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 345788999999999999999987754
No 59
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=93.81 E-value=0.096 Score=40.80 Aligned_cols=78 Identities=17% Similarity=0.008 Sum_probs=48.6
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
...|....++.. +.||.|++.|+.--- --.+-...+|+.+.++|++
T Consensus 94 ~~~d~~~~~~~~---~~~D~i~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~l~~ 139 (195)
T 3cgg_A 94 VVGDLSVDQISE---TDFDLIVSAGNVMGF-------------------------------LAEDGREPALANIHRALGA 139 (195)
T ss_dssp EECCTTTSCCCC---CCEEEEEECCCCGGG-------------------------------SCHHHHHHHHHHHHHHEEE
T ss_pred EEcccccCCCCC---CceeEEEECCcHHhh-------------------------------cChHHHHHHHHHHHHHhCC
Confidence 455666655543 379999998643210 0012246788999999999
Q ss_pred CCEEEEEEeeccCCCC--CCCccccCCceeEeeE
Q 039679 153 GGRLVYFYPVLREDST--RNPFPEHLCFKLVASS 184 (230)
Q Consensus 153 gGRLvf~lP~~~~~~~--~~~lp~h~gl~li~~~ 184 (230)
||++++..|....... ...+-...||.++...
T Consensus 140 ~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 140 DGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp EEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence 9999998886532110 1122335588887654
No 60
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=93.45 E-value=0.029 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHHHHHHhhccccCCEEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
...+++.+.++|+|||+|+|+-
T Consensus 149 ~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 149 FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HHHHHHTHHHHEEEEEEEEECC
T ss_pred hhhhhhhhhheeCCCCEEEEEe
Confidence 3567889999999999999973
No 61
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=93.44 E-value=0.023 Score=50.11 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+++..++..+.++|++||++++-.+..
T Consensus 148 ~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 148 GFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 345789999999999999999975543
No 62
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=92.99 E-value=0.12 Score=45.72 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=31.2
Q ss_pred ccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeeccCC
Q 039679 89 VFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLRED 166 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~ 166 (230)
.||.|..||||+... ....++..+. .+..+.++|.++.|+|.-...
T Consensus 159 ~fdLVfiDPPYe~k~------------------------------~~~~vl~~L~--~~~~r~~~Gi~v~WYPi~~~~ 204 (283)
T 2oo3_A 159 KRGLIFIDPSYERKE------------------------------EYKEIPYAIK--NAYSKFSTGLYCVWYPVVNKA 204 (283)
T ss_dssp SCEEEEECCCCCSTT------------------------------HHHHHHHHHH--HHHHHCTTSEEEEEEEESSHH
T ss_pred CccEEEECCCCCCCc------------------------------HHHHHHHHHH--HhCccCCCeEEEEEEeccchH
Confidence 589999999999721 1222332222 344678899999999987543
No 63
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=92.48 E-value=0.061 Score=47.70 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=30.3
Q ss_pred cccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 88 EVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.||.|++||||... ++++.+.++|++||.+++.--..
T Consensus 257 ~~fD~Vi~dpP~~~~--------------------------------------~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 257 VKGNRVIMNLPKFAH--------------------------------------KFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCEEEEEECCTTTGG--------------------------------------GGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCCcEEEECCcHhHH--------------------------------------HHHHHHHHHcCCCCEEEEEEeec
Confidence 379999999998631 36788899999999998875444
No 64
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=92.46 E-value=0.011 Score=49.81 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=39.2
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCccccccc-ccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHH----HHH
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGR-KLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLL----DLA 146 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~r-k~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL----~~A 146 (230)
++.+|....++..+ +.| .||++|||.+....- .... |.+ . ....+ +.|
T Consensus 79 ~~~~D~~~~~~~~~--~~f-~vv~n~Py~~~~~~~~~~~~---------------~~~----~-----~~~~lm~q~e~a 131 (245)
T 1yub_A 79 LIHQDILQFQFPNK--QRY-KIVGNIPYHLSTQIIKKVVF---------------ESR----A-----SDIYLIVEEGFY 131 (245)
T ss_dssp ECCSCCTTTTCCCS--SEE-EEEEECCSSSCHHHHHHHHH---------------HCC----C-----EEEEEEEESSHH
T ss_pred EEECChhhcCcccC--CCc-EEEEeCCccccHHHHHHHHh---------------CCC----C-----CeEEEEeeHHHH
Confidence 35566666555431 267 899999999853321 0000 000 0 00123 779
Q ss_pred hhccccCCEEEEEEeecc
Q 039679 147 GRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 147 a~~L~~gGRLvf~lP~~~ 164 (230)
.++|++||+|+++.+...
T Consensus 132 ~rll~~~G~l~v~~~~~~ 149 (245)
T 1yub_A 132 KRTLDIHRTLGLLLHTQV 149 (245)
T ss_dssp HHHHCGGGSHHHHTTTTB
T ss_pred HHHhCCCCchhhhheehe
Confidence 999999999998876544
No 65
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=92.41 E-value=0.13 Score=42.82 Aligned_cols=65 Identities=11% Similarity=-0.140 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 134 ~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
+--.++..++..+.++|+++|.+.+-.-..........+-...||.-+....... ++..|+++..
T Consensus 186 G~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~-g~~~~~~~~w 250 (254)
T 2h00_A 186 GELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQ-GRTMRWALAW 250 (254)
T ss_dssp THHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEE-TTEEEEEEEE
T ss_pred CEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEec-CCceEEEEEe
Confidence 4455677778888888999997654322111100011233456888776543332 4567776654
No 66
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=92.16 E-value=0.072 Score=42.99 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=39.0
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
...|....++.. +.||+|+|.++...- ... -...++..+.++|++
T Consensus 90 ~~~d~~~~~~~~---~~~D~v~~~~~~~~~-------------------------------~~~-~~~~~l~~~~~~L~~ 134 (227)
T 1ve3_A 90 IVGDARKLSFED---KTFDYVIFIDSIVHF-------------------------------EPL-ELNQVFKEVRRVLKP 134 (227)
T ss_dssp EECCTTSCCSCT---TCEEEEEEESCGGGC-------------------------------CHH-HHHHHHHHHHHHEEE
T ss_pred EECchhcCCCCC---CcEEEEEEcCchHhC-------------------------------CHH-HHHHHHHHHHHHcCC
Confidence 456666555443 379999999883321 011 135688999999999
Q ss_pred CCEEEEEEeec
Q 039679 153 GGRLVYFYPVL 163 (230)
Q Consensus 153 gGRLvf~lP~~ 163 (230)
||++++..|..
T Consensus 135 gG~l~~~~~~~ 145 (227)
T 1ve3_A 135 SGKFIMYFTDL 145 (227)
T ss_dssp EEEEEEEEECH
T ss_pred CcEEEEEecCh
Confidence 99999998864
No 67
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=91.96 E-value=0.13 Score=47.01 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 136 SECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 136 ~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.+.+..+++.+.++|++||.++..--.
T Consensus 290 ~eFy~~~~~~~~~~L~pgGilv~qs~s 316 (364)
T 2qfm_A 290 WEFLRLILDLSMKVLKQDGKYFTQGNC 316 (364)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 467778888889999999999988543
No 68
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=91.93 E-value=0.021 Score=45.92 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=36.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVK 201 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K 201 (230)
+..+++.+.++|++||++++.-+..........+-...||.++..... +.|.. +++.++
T Consensus 138 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~---~~w~~-~~~~~~ 196 (205)
T 3grz_A 138 LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA---GRWIG-LAISRK 196 (205)
T ss_dssp HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE---TTEEE-EEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc---CCEEE-EEEecc
Confidence 357889999999999999986444332221223444568888764322 34555 555554
No 69
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=91.86 E-value=0.062 Score=46.08 Aligned_cols=74 Identities=22% Similarity=0.071 Sum_probs=43.5
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH-HH--HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCC
Q 039679 46 FHFVNLPSEDIARSIANRIWITN-AY--WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDK 122 (230)
Q Consensus 46 f~vV~lp~e~~a~~l~~Rsil~~-I~--~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~ 122 (230)
..-||+ ...|.+.+++.+-.. += ..+..|....+. .+.||.||+|||+|.
T Consensus 146 V~~vD~--s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~----~~~~D~Vi~d~p~~~--------------------- 198 (272)
T 3a27_A 146 VYAIEK--NPTAYHYLCENIKLNKLNNVIPILADNRDVEL----KDVADRVIMGYVHKT--------------------- 198 (272)
T ss_dssp EEEEEC--CHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC----TTCEEEEEECCCSSG---------------------
T ss_pred EEEEeC--CHHHHHHHHHHHHHcCCCCEEEEECChHHcCc----cCCceEEEECCcccH---------------------
Confidence 344444 444555665554322 10 123444443322 247999999999822
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 123 RVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 123 ~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.+.|++||++++.-...
T Consensus 199 -----------------~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 199 -----------------HKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp -----------------GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -----------------HHHHHHHHHHcCCCCEEEEEEcCc
Confidence 125778889999999997665444
No 70
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=91.77 E-value=0.12 Score=44.44 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=18.1
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.++++.+.++|++||.+++..
T Consensus 169 ~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 169 KGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp THHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEc
Confidence 357888899999999999985
No 71
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=91.34 E-value=0.06 Score=43.17 Aligned_cols=15 Identities=33% Similarity=0.826 Sum_probs=13.2
Q ss_pred ccceeEeCCCCcccc
Q 039679 89 VFDAIICDPPYGVRA 103 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa 103 (230)
.||.|++||||+...
T Consensus 112 ~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 112 RVDIVIMNPPFGSQR 126 (207)
T ss_dssp CCSEEEECCCCSSSS
T ss_pred CCCEEEEcCCCcccc
Confidence 799999999999843
No 72
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=91.28 E-value=0.13 Score=40.66 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhccccCCEEEEEEee
Q 039679 136 SECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 136 ~~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.++...+++.+.++|++||++++....
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 121 ISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 345678899999999999999987553
No 73
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=91.12 E-value=0.12 Score=41.10 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=60.1
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
...|....++..+ .||+|++.++++.-.+... .+ + .....-.+-...+|+.+.++|++
T Consensus 94 ~~~d~~~~~~~~~---~fD~v~~~~~~~~~~~~~~------~~----------~---~~~~~~~~~~~~~l~~~~~~Lkp 151 (215)
T 2pxx_A 94 ETMDVRKLDFPSA---SFDVVLEKGTLDALLAGER------DP----------W---TVSSEGVHTVDQVLSEVSRVLVP 151 (215)
T ss_dssp EECCTTSCCSCSS---CEEEEEEESHHHHHTTTCS------CT----------T---SCCHHHHHHHHHHHHHHHHHEEE
T ss_pred EEcchhcCCCCCC---cccEEEECcchhhhccccc------cc----------c---ccccchhHHHHHHHHHHHHhCcC
Confidence 4566666555543 7999999998865322110 00 0 00111233457889999999999
Q ss_pred CCEEEEEEeeccCCCCCCCccccC--CceeEeeEEEecCCceeEEEEEEEEcCCC
Q 039679 153 GGRLVYFYPVLREDSTRNPFPEHL--CFKLVASSEQILSSRYSRVLLTMVKIGLY 205 (230)
Q Consensus 153 gGRLvf~lP~~~~~~~~~~lp~h~--gl~li~~~~Q~~~~k~sR~Lit~~K~~~~ 205 (230)
||++++..|...... ..+-... +|.+. .+.......-..+++++....
T Consensus 152 gG~li~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 201 (215)
T 2pxx_A 152 GGRFISMTSAAPHFR--TRHYAQAYYGWSLR---HATYGSGFHFHLYLMHKGGKL 201 (215)
T ss_dssp EEEEEEEESCCHHHH--HHHHCCGGGCEEEE---EEEESGGGCEEEEEEEETCCC
T ss_pred CCEEEEEeCCCcHHH--HHHHhccccCcEEE---EEEecCcceEEEEEEEeCCCC
Confidence 999999977542111 0111122 33332 233344455667888887764
No 74
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=90.76 E-value=0.084 Score=44.90 Aligned_cols=45 Identities=7% Similarity=0.127 Sum_probs=30.1
Q ss_pred HHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEE
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSE 185 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~ 185 (230)
.+|+.+.++|++||++++..|...........-...||..+....
T Consensus 192 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 192 NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 468889999999999999998763211111222345888776653
No 75
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=90.59 E-value=0.052 Score=44.95 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEE
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSE 185 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~ 185 (230)
.+++.+.++|++||++++..|...........-...||..+...+
T Consensus 179 ~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 179 KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp GGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence 368889999999999999999763211111112235777665543
No 76
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=90.46 E-value=0.19 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.7
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.++++.+.++|++||.+++....
T Consensus 178 ~~f~~~~~~~LkpgG~lv~~~~s 200 (294)
T 3adn_A 178 SAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCC
Confidence 46788999999999999998643
No 77
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=90.29 E-value=0.16 Score=41.87 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
....++..+.++|+|||+|+|+-++
T Consensus 148 ~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 148 QFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp HHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred hHHHHHHHHHHhcCCCeEEEEEecC
Confidence 3456789999999999999987544
No 78
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=90.27 E-value=0.08 Score=41.15 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeE
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLV 181 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li 181 (230)
..+++.+.++|++||++++..+...........-...||.+.
T Consensus 114 ~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 114 QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 568889999999999999987764332211222334466443
No 79
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=90.22 E-value=0.36 Score=38.58 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCF 178 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl 178 (230)
..+++.+.++|++||++++..+...........-...||
T Consensus 122 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 122 EEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 468999999999999999987765332212223334576
No 80
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=89.99 E-value=0.18 Score=39.58 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.....++.+.++|+|||++++....
T Consensus 113 ~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 113 TTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred hHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3456788999999999999887543
No 81
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=89.93 E-value=0.23 Score=39.38 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEee
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
++...++..+.++|+|||++++-...
T Consensus 131 ~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 131 ELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 45567899999999999999986554
No 82
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=89.69 E-value=0.16 Score=42.17 Aligned_cols=23 Identities=26% Similarity=0.454 Sum_probs=20.0
Q ss_pred HHHHHhhccccCCEEEEEEeecc
Q 039679 142 LLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+++.+.++|++||++++..|...
T Consensus 176 ~l~~~~~~L~~gG~l~~~~~~~~ 198 (255)
T 3mb5_A 176 VVEHAAKALKPGGFFVAYTPCSN 198 (255)
T ss_dssp GHHHHHHHEEEEEEEEEEESSHH
T ss_pred HHHHHHHHcCCCCEEEEEECCHH
Confidence 58888999999999999988653
No 83
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=89.42 E-value=0.19 Score=44.32 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.3
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.+.++|++||.+++...
T Consensus 210 ~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 210 QNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEcC
Confidence 5688899999999999999854
No 84
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=89.40 E-value=0.21 Score=42.99 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=19.4
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.++++.+.++|++||.+++....
T Consensus 173 ~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 173 EEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEcCC
Confidence 46788899999999999998643
No 85
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=89.39 E-value=0.27 Score=39.39 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeeccCCCCC--------------CCccccCC-ceeEeeEE---EecCCceeEEEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLREDSTR--------------NPFPEHLC-FKLVASSE---QILSSRYSRVLLTM 199 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~--------------~~lp~h~g-l~li~~~~---Q~~~~k~sR~Lit~ 199 (230)
-...+|..+.++|++||++++..|........ ..+-...| |.++.... ....+...++|..+
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~ 198 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVS 198 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceEEEEE
Confidence 35678999999999999999998865432211 01223458 99987763 22444468888888
Q ss_pred EEcCCCc
Q 039679 200 VKIGLYT 206 (230)
Q Consensus 200 ~K~~~~~ 206 (230)
.+.+++.
T Consensus 199 ~~~~~~~ 205 (211)
T 3e23_A 199 VRKPELE 205 (211)
T ss_dssp EECCCC-
T ss_pred EecCccc
Confidence 8777654
No 86
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=89.38 E-value=0.089 Score=44.48 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSR 194 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR 194 (230)
+..++..+.++|++||++++.-+...........-...||.++....+ +.|..
T Consensus 197 ~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~---~~W~~ 249 (254)
T 2nxc_A 197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE---GEWVL 249 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE---TTEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc---CCeEE
Confidence 457888999999999999886444322221122334568998876432 34665
No 87
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=89.21 E-value=0.17 Score=42.84 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHHhhccccCCEEEEEEeec
Q 039679 142 LLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+++.+.++|++||++++..|+.
T Consensus 195 ~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 195 YIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp THHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHcCCCCEEEEEeCCH
Confidence 5788899999999999999865
No 88
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=89.04 E-value=0.44 Score=37.91 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCC-ceeEEEEEEEEc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSS-RYSRVLLTMVKI 202 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~-k~sR~Lit~~K~ 202 (230)
+..+++.+.++|++||++++.......+. ...+.. ||.++....=.+.. .-.|+++.++|.
T Consensus 144 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~-~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 144 LNDMVSWCHHLPGEQGRFYALKGQMPEDE-IALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEESSCCHHH-HHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCchHH-HHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 35789999999999999998854332222 112222 88887644112221 246888888874
No 89
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=88.75 E-value=0.18 Score=43.91 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=19.7
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
.++++.+.++|++||++++..+.
T Consensus 190 ~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 190 EAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCcEEEEecCC
Confidence 46788999999999999998653
No 90
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=88.75 E-value=0.18 Score=42.89 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=16.9
Q ss_pred HHHHHHhhccccCCEEEEEEee
Q 039679 141 DLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
-|+..+.+.|++||+|++.++.
T Consensus 162 il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 162 IAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp HHHHHHHHHEEEEEEEEEEEC-
T ss_pred HHHHHHHHhCCCCeEEEEEEcc
Confidence 3556677799999999998754
No 91
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=88.67 E-value=0.18 Score=43.92 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=19.0
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.++++.+.++|++||.+++...
T Consensus 185 ~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 185 EEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp HHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCcEEEEEcc
Confidence 5678899999999999999853
No 92
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=88.47 E-value=0.3 Score=39.59 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.1
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||.+++-
T Consensus 159 ~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 159 SAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEE
Confidence 45788899999999999874
No 93
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=87.99 E-value=0.31 Score=39.38 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=16.9
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||+|++-
T Consensus 154 ~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 154 DLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 45788899999999999873
No 94
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=87.91 E-value=0.35 Score=39.65 Aligned_cols=44 Identities=20% Similarity=-0.002 Sum_probs=28.1
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCC---------CCCccccCCceeEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDST---------RNPFPEHLCFKLVAS 183 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~---------~~~lp~h~gl~li~~ 183 (230)
..++..+.++|+|||++++-.+....+.. +..+-...||+++..
T Consensus 162 ~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 162 RIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQ 214 (233)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 34677899999999999887765311110 012334558888764
No 95
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=87.81 E-value=0.36 Score=39.98 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.5
Q ss_pred HHHHHHHhhccccCCEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf 158 (230)
.++++.+.++|+|||.+++
T Consensus 143 ~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 143 KALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEE
Confidence 4578889999999999987
No 96
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=87.76 E-value=0.39 Score=42.47 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=35.4
Q ss_pred HhhcCCCCCCCCCcccccceeEeCC-CCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDP-PYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILV 151 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDP-PYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~ 151 (230)
+..|....++.. +.||+||+++ +|+..- ...+..+|..+.++|+
T Consensus 118 ~~~d~~~~~~~~---~~~D~Ivs~~~~~~l~~--------------------------------~~~~~~~l~~~~~~Lk 162 (340)
T 2fyt_A 118 IKGKIEEVHLPV---EKVDVIISEWMGYFLLF--------------------------------ESMLDSVLYAKNKYLA 162 (340)
T ss_dssp EESCTTTSCCSC---SCEEEEEECCCBTTBTT--------------------------------TCHHHHHHHHHHHHEE
T ss_pred EEeeHHHhcCCC---CcEEEEEEcCchhhccC--------------------------------HHHHHHHHHHHHhhcC
Confidence 456666555543 3799999998 676411 1134568888899999
Q ss_pred cCCEEE
Q 039679 152 MGGRLV 157 (230)
Q Consensus 152 ~gGRLv 157 (230)
|||+++
T Consensus 163 pgG~li 168 (340)
T 2fyt_A 163 KGGSVY 168 (340)
T ss_dssp EEEEEE
T ss_pred CCcEEE
Confidence 999997
No 97
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=87.68 E-value=0.36 Score=39.24 Aligned_cols=23 Identities=26% Similarity=0.073 Sum_probs=19.2
Q ss_pred HHHHHHhhccccCCEEEEEEeec
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.++..+.++|+|||++++..+..
T Consensus 159 ~~l~~~~~~LkpgG~l~~~~~~~ 181 (227)
T 1g8a_A 159 ILIDNAEVYLKRGGYGMIAVKSR 181 (227)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEGG
T ss_pred HHHHHHHHhcCCCCEEEEEEecC
Confidence 45888999999999999886554
No 98
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=87.34 E-value=0.89 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.5
Q ss_pred cccceeEeCCCCcccc
Q 039679 88 EVFDAIICDPPYGVRA 103 (230)
Q Consensus 88 e~~DaIvtDPPYGiRa 103 (230)
+.||+|++||||+--.
T Consensus 143 ~~~D~v~~~~~~~~~~ 158 (241)
T 3gdh_A 143 LKADVVFLSPPWGGPD 158 (241)
T ss_dssp CCCSEEEECCCCSSGG
T ss_pred CCCCEEEECCCcCCcc
Confidence 4899999999998643
No 99
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=87.06 E-value=0.62 Score=37.62 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=18.1
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+++.+.++|++||.+++-=+.
T Consensus 147 ~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 147 PAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCS
T ss_pred HHHHHHHHHhcCCCcEEEEeCCC
Confidence 46788899999999988874333
No 100
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=87.01 E-value=0.2 Score=42.14 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred HHHHHhhccccCCEEEEEEeec
Q 039679 142 LLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+++.+.++|++||++++..|+.
T Consensus 185 ~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 185 VLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp GHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHhCCCCCEEEEEeCCH
Confidence 5888999999999999999975
No 101
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=86.79 E-value=0.33 Score=39.82 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=20.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.++|+|||++++.++..
T Consensus 141 ~~~l~~~~r~LkpgG~l~i~~~~~ 164 (210)
T 1nt2_A 141 EILKANAEFFLKEKGEVVIMVKAR 164 (210)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred HHHHHHHHHHhCCCCEEEEEEecC
Confidence 346888999999999999998754
No 102
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=86.76 E-value=0.29 Score=42.84 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=18.6
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.++++.+.++|++||.+++-..
T Consensus 189 ~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 189 ESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp CHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCCeEEEEecC
Confidence 4678889999999999998753
No 103
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=86.66 E-value=0.65 Score=36.74 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeecc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
...+++.+.++|+|||++++..+...
T Consensus 107 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 107 VKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 46788999999999999999887653
No 104
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=86.57 E-value=0.43 Score=39.32 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHHHhhccccCCEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf 158 (230)
+.++++.+.++|++||+|++
T Consensus 155 ~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 155 SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp HHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEE
Confidence 35688999999999999987
No 105
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=86.50 E-value=0.52 Score=38.49 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.3
Q ss_pred HHHHHhhccccCCEEEEEEeec
Q 039679 142 LLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+++.+.++|++||++++..|..
T Consensus 172 ~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 172 YLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp GHHHHHHHBCTTCEEEEEESSH
T ss_pred HHHHHHHHcCCCCEEEEEeCCH
Confidence 4778889999999999999964
No 106
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=86.50 E-value=0.18 Score=38.96 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=27.5
Q ss_pred HHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeE
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASS 184 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~ 184 (230)
.+++.+.++|++||++++..+...+.......-...|+.+....
T Consensus 108 ~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 108 GVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp THHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEE
Confidence 37889999999999999876654332211222233356665544
No 107
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=86.35 E-value=0.33 Score=44.45 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=42.5
Q ss_pred EEEecCCHHHHHHHHHHHHHHH-H----HHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCC
Q 039679 47 HFVNLPSEDIARSIANRIWITN-A----YWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDD 121 (230)
Q Consensus 47 ~vV~lp~e~~a~~l~~Rsil~~-I----~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~ 121 (230)
.|+-++.+..|.+++++.+-.- + ...+..|...- .+....+.||.|++|| ||.
T Consensus 79 ~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~-l~~~~~~~fD~V~lDP-~g~-------------------- 136 (392)
T 3axs_A 79 KAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF-LRKEWGFGFDYVDLDP-FGT-------------------- 136 (392)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-HHSCCSSCEEEEEECC-SSC--------------------
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH-HHHhhCCCCcEEEECC-CcC--------------------
Confidence 3455555666888888876533 1 10111121100 0000123799999999 642
Q ss_pred CccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEEEE
Q 039679 122 KRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 122 ~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..++++.|.++|++||.|.+-
T Consensus 137 -----------------~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 137 -----------------PVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp -----------------CHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------HHHHHHHHHHHhCCCCEEEEE
Confidence 035788999999999976554
No 108
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=86.19 E-value=0.36 Score=42.59 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.1
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
..+++.+.++|++||.+++-.
T Consensus 202 ~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 202 QSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp --HHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHhhcCCCeEEEEEC
Confidence 568889999999999999864
No 109
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=86.10 E-value=0.32 Score=43.46 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=11.0
Q ss_pred ccceeEeCCCCc
Q 039679 89 VFDAIICDPPYG 100 (230)
Q Consensus 89 ~~DaIvtDPPYG 100 (230)
.||.||.||||.
T Consensus 295 ~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 295 QCETIFVDPPRS 306 (369)
T ss_dssp CEEEEEECCCTT
T ss_pred CCCEEEECcCcc
Confidence 699999999985
No 110
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=86.08 E-value=0.34 Score=39.60 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.4
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||++++-
T Consensus 140 ~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 140 RRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp HHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEE
Confidence 56788999999999999874
No 111
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=85.89 E-value=0.37 Score=41.49 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.0
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.+.++|++||.+++...
T Consensus 172 ~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 172 QNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp HHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCcEEEEECC
Confidence 5688899999999999998854
No 112
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=85.76 E-value=0.4 Score=42.66 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.4
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
..+++.+.++|++||.|++-.
T Consensus 215 ~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 215 KPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEec
Confidence 578899999999999999863
No 113
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=85.73 E-value=0.39 Score=42.03 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.+.++|++||.+++...
T Consensus 175 ~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 175 VEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEcc
Confidence 5688899999999999999853
No 114
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=85.69 E-value=1.1 Score=37.11 Aligned_cols=55 Identities=18% Similarity=0.002 Sum_probs=39.0
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILV 151 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~ 151 (230)
....|....++.. +.||+|+|..+...- + ...+++.+.++|+
T Consensus 100 ~~~~d~~~~~~~~---~~fD~i~~~~~~~~~-------------------------------~----~~~~l~~~~~~Lk 141 (267)
T 3kkz_A 100 GIVGSMDDLPFRN---EELDLIWSEGAIYNI-------------------------------G----FERGLNEWRKYLK 141 (267)
T ss_dssp EEECCTTSCCCCT---TCEEEEEESSCGGGT-------------------------------C----HHHHHHHHGGGEE
T ss_pred EEEcChhhCCCCC---CCEEEEEEcCCceec-------------------------------C----HHHHHHHHHHHcC
Confidence 3556666656544 389999987554320 0 2568899999999
Q ss_pred cCCEEEEEEeecc
Q 039679 152 MGGRLVYFYPVLR 164 (230)
Q Consensus 152 ~gGRLvf~lP~~~ 164 (230)
|||++++.-|+..
T Consensus 142 pgG~l~~~~~~~~ 154 (267)
T 3kkz_A 142 KGGYLAVSECSWF 154 (267)
T ss_dssp EEEEEEEEEEEES
T ss_pred CCCEEEEEEeeec
Confidence 9999999887643
No 115
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=85.66 E-value=0.82 Score=36.36 Aligned_cols=25 Identities=32% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+|..+.++|++||++++..|...
T Consensus 112 ~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 112 ERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHcCCCCEEEEEecCCc
Confidence 5688899999999999999988653
No 116
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=85.62 E-value=0.51 Score=38.96 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCCC--CCccccCCceeEeeEEEecCC-ceeEEEEEEEEcCC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDSTR--NPFPEHLCFKLVASSEQILSS-RYSRVLLTMVKIGL 204 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~--~~lp~h~gl~li~~~~Q~~~~-k~sR~Lit~~K~~~ 204 (230)
+..+++.+.++|++||+++++--....+... ...-...||.++....-.+.. .-.|.+++++|...
T Consensus 153 ~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~ 221 (240)
T 1xdz_A 153 LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKN 221 (240)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCC
Confidence 4678999999999999998873221111100 012234588888765333443 35788999998754
No 117
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=85.07 E-value=1.5 Score=35.02 Aligned_cols=62 Identities=27% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCC--CCCCccccCCceeEeeEEEecCCceeEEEEEEEEcCCC
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDS--TRNPFPEHLCFKLVASSEQILSSRYSRVLLTMVKIGLY 205 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~--~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K~~~~ 205 (230)
..+|+.+.++|++||++++.-+...... ....+-...||.++... ... -...++..+|..+.
T Consensus 131 ~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~--~~~~~~~~~k~~~~ 194 (215)
T 2zfu_A 131 RDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD--LTN--SHFFLFDFQKTGPP 194 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE--CCS--TTCEEEEEEECSSC
T ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe--cCC--CeEEEEEEEecCcc
Confidence 5678889999999999999765442111 01133346699887632 222 23356777776543
No 118
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=84.99 E-value=0.87 Score=37.97 Aligned_cols=20 Identities=20% Similarity=-0.023 Sum_probs=16.8
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|+|||.|++-
T Consensus 150 ~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 150 PHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp HHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEe
Confidence 34788889999999999874
No 119
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=84.85 E-value=0.52 Score=38.03 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.5
Q ss_pred HHHHHHHHhhccccCCEEEEEEe
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
...+++.+.++|++||++++..+
T Consensus 135 ~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 135 YKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp SHHHHHHHHHHSCTTCEEEEEES
T ss_pred CHHHHHHHHHHcCCCcEEEEEeC
Confidence 46789999999999999988743
No 120
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=84.51 E-value=0.24 Score=40.21 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.7
Q ss_pred HHHhhccccCCEEEEEEeec
Q 039679 144 DLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 144 ~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.+.++|++||+|++..++.
T Consensus 166 ~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 166 QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp HHHHHTEEEEEEEEEEESCT
T ss_pred HHHHHhcCCCcEEEEEEecC
Confidence 56789999999999987754
No 121
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=84.37 E-value=1.4 Score=36.00 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCC---------CCCccccCCceeEeeEEEecCC-ceeEEEEEEEEc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDST---------RNPFPEHLCFKLVASSEQILSS-RYSRVLLTMVKI 202 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~---------~~~lp~h~gl~li~~~~Q~~~~-k~sR~Lit~~K~ 202 (230)
...++..+.++|+|||++++.+........ +..+-...||.++... .+.. .+...+++.+|.
T Consensus 157 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~~~--~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 157 AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV--DIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE--ECTTTSTTEEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEEEE--ccCCCccceEEEEEEeC
Confidence 356789999999999999886433211110 0011123477776543 3322 245667777664
No 122
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=84.05 E-value=1.1 Score=35.35 Aligned_cols=26 Identities=15% Similarity=-0.035 Sum_probs=22.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEeecc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
...+|..+.++|++||++++..+...
T Consensus 110 ~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 46788999999999999999987654
No 123
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=84.05 E-value=0.46 Score=41.64 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=33.6
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCC-CcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPP-YGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILV 151 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPP-YGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~ 151 (230)
+..|....++.. +.||+|||+++ |+.. . .+.+..++..+.++|+
T Consensus 92 ~~~d~~~~~~~~---~~~D~Ivs~~~~~~l~-~-------------------------------~~~~~~~l~~~~~~Lk 136 (328)
T 1g6q_1 92 LRGKLEDVHLPF---PKVDIIISEWMGYFLL-Y-------------------------------ESMMDTVLYARDHYLV 136 (328)
T ss_dssp EESCTTTSCCSS---SCEEEEEECCCBTTBS-T-------------------------------TCCHHHHHHHHHHHEE
T ss_pred EECchhhccCCC---CcccEEEEeCchhhcc-c-------------------------------HHHHHHHHHHHHhhcC
Confidence 556666555443 37999999988 3320 0 0124567888899999
Q ss_pred cCCEEE
Q 039679 152 MGGRLV 157 (230)
Q Consensus 152 ~gGRLv 157 (230)
|||+++
T Consensus 137 pgG~li 142 (328)
T 1g6q_1 137 EGGLIF 142 (328)
T ss_dssp EEEEEE
T ss_pred CCeEEE
Confidence 999986
No 124
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=84.02 E-value=0.78 Score=40.82 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+++.+.++|++||.+++....
T Consensus 180 ~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 180 VEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEecC
Confidence 46888999999999999999763
No 125
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=83.72 E-value=0.57 Score=39.23 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHHHHHhhccccCCEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf 158 (230)
..+++.+.++|+|||.|++
T Consensus 150 ~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 150 LNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEE
Confidence 3478888999999999987
No 126
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=83.59 E-value=1.4 Score=37.06 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=38.7
Q ss_pred HhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 039679 73 AKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVM 152 (230)
Q Consensus 73 l~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~ 152 (230)
...|....++ . +.||+|+|..+..--. .+.+..++..+.++|++
T Consensus 172 ~~~d~~~~~~-~---~~fD~i~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~Lkp 215 (286)
T 3m70_A 172 ALYDINAANI-Q---ENYDFIVSTVVFMFLN--------------------------------RERVPSIIKNMKEHTNV 215 (286)
T ss_dssp EECCGGGCCC-C---SCEEEEEECSSGGGSC--------------------------------GGGHHHHHHHHHHTEEE
T ss_pred EEeccccccc-c---CCccEEEEccchhhCC--------------------------------HHHHHHHHHHHHHhcCC
Confidence 4556655554 2 3899999988654200 01245688999999999
Q ss_pred CCEEEEEEeeccC
Q 039679 153 GGRLVYFYPVLRE 165 (230)
Q Consensus 153 gGRLvf~lP~~~~ 165 (230)
||+++++.+...+
T Consensus 216 gG~l~i~~~~~~~ 228 (286)
T 3m70_A 216 GGYNLIVAAMSTD 228 (286)
T ss_dssp EEEEEEEEEBCCS
T ss_pred CcEEEEEEecCCC
Confidence 9999888765543
No 127
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=83.51 E-value=1.3 Score=36.30 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=21.4
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+|..+.++|+|||++++.-|...
T Consensus 130 ~~~l~~~~~~L~pgG~l~~~~~~~~ 154 (257)
T 3f4k_A 130 ERGMNEWSKYLKKGGFIAVSEASWF 154 (257)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHcCCCcEEEEEEeecc
Confidence 5688999999999999999887643
No 128
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=82.99 E-value=1.1 Score=37.34 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.++|+|||++++..|..
T Consensus 153 ~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 153 LDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCH
Confidence 5678999999999999999998874
No 129
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=82.96 E-value=1.1 Score=37.60 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHhhccccCCEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf 158 (230)
..+++.+.++|++||.+++
T Consensus 170 ~~~l~~~~~~LkpGG~lv~ 188 (247)
T 1sui_A 170 LNYHKRLIDLVKVGGVIGY 188 (247)
T ss_dssp HHHHHHHHHHBCTTCCEEE
T ss_pred HHHHHHHHHhCCCCeEEEE
Confidence 4678888999999999986
No 130
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=82.63 E-value=0.97 Score=35.66 Aligned_cols=22 Identities=23% Similarity=0.058 Sum_probs=18.7
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+|..+.++|+|||++++.-+
T Consensus 128 ~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 128 ATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEEec
Confidence 4688899999999999998743
No 131
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=82.21 E-value=0.81 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.160 Sum_probs=15.7
Q ss_pred HHHHHHhhccccCCEEEEE
Q 039679 141 DLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~ 159 (230)
++|+.|.++|++||.+++-
T Consensus 145 ~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 145 EFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 6788999999999976553
No 132
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=82.02 E-value=1.6 Score=34.00 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=21.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeecc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
...+++.+.++|++||+++++-+...
T Consensus 115 ~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (199)
T 2xvm_A 115 IPGLIANMQRCTKPGGYNLIVAAMDT 140 (199)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEEBCC
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeecc
Confidence 35688899999999999988766543
No 133
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=81.85 E-value=1.5 Score=35.79 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+|..+.++|+|||++++.-|...
T Consensus 120 ~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (256)
T 1nkv_A 120 AGAEELLAQSLKPGGIMLIGEPYWR 144 (256)
T ss_dssp HHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHcCCCeEEEEecCccc
Confidence 5678899999999999999887654
No 134
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=81.19 E-value=0.98 Score=36.19 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.9
Q ss_pred HHHHHHHhhccccCCEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf 158 (230)
..+++.+.++|++||++++
T Consensus 140 ~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 140 ADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp HHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEE
Confidence 5678899999999999987
No 135
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=80.92 E-value=1.2 Score=37.85 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.8
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...+..+.+.|+|||++++....
T Consensus 162 ~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 162 AIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHhccCCCEEEEEEec
Confidence 34688899999999999887643
No 136
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=80.78 E-value=1 Score=36.41 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|+.+.++|++||++++..|..
T Consensus 124 ~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 124 ARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HHHHHHHHHhcCcCcEEEEEeCCc
Confidence 468889999999999999987653
No 137
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=80.70 E-value=1.3 Score=35.48 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=19.9
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+|+.+.++|++||++++.-+.
T Consensus 121 ~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 121 SRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEEECC
Confidence 46889999999999999998663
No 138
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=80.54 E-value=1.6 Score=35.91 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.++++|+|||++.+.-.
T Consensus 130 ~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 130 VPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHcCCCcEEEEEeC
Confidence 4589999999999999988743
No 139
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=80.48 E-value=2.3 Score=34.26 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+|||++++.-+..
T Consensus 128 ~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 128 KELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred HHHHHHHHHhcCCCcEEEEEEecC
Confidence 468899999999999999876654
No 140
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=79.82 E-value=1.2 Score=36.62 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||.+++-
T Consensus 162 ~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 162 PRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp HHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEe
Confidence 45788899999999999884
No 141
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=79.51 E-value=1.4 Score=36.22 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=17.5
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.++++.+.++|++||++++--
T Consensus 161 ~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 161 PNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 357888999999999998753
No 142
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=79.22 E-value=0.88 Score=35.96 Aligned_cols=63 Identities=14% Similarity=-0.018 Sum_probs=40.9
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCCC---------------CCCccccCCceeEeeEEEecCCceeEEEEEEEEcC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDST---------------RNPFPEHLCFKLVASSEQILSSRYSRVLLTMVKIG 203 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~---------------~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K~~ 203 (230)
...+|+.+.++|++||++++..|....... ...+-...||.++......- .....|.+..+.+
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~~~~ 197 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEASLE 197 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEECC-
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhhhhh
Confidence 356888999999999999998876543110 01222355888887654433 6777777666544
No 143
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=78.98 E-value=1.3 Score=36.78 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.1
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
..+++.+.++|++||.+++-
T Consensus 161 ~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 161 IKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEe
Confidence 56788899999999999873
No 144
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=78.98 E-value=1.6 Score=35.69 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=22.7
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
...+|..+.++|+|||++++.-|....
T Consensus 138 ~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 138 KNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred HHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 467889999999999999999876543
No 145
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=78.50 E-value=0.88 Score=39.62 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=39.5
Q ss_pred ecCCHHHHHHHHHHHHHHH-HH---HHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccC
Q 039679 50 NLPSEDIARSIANRIWITN-AY---WFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVG 125 (230)
Q Consensus 50 ~lp~e~~a~~l~~Rsil~~-I~---~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~ 125 (230)
-.+.+..|.+.+++.+-.. +- ..+..|...-+- .+.||.||.|||++..
T Consensus 153 avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~----~~~~D~Vi~~~p~~~~----------------------- 205 (278)
T 3k6r_A 153 AIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRILMGYVVRTH----------------------- 205 (278)
T ss_dssp EECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEEEECCCSSGG-----------------------
T ss_pred EEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc----ccCCCEEEECCCCcHH-----------------------
Confidence 3333344555555554332 11 134455543321 2489999999997641
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhccccCCEEEE
Q 039679 126 HIPSTAPYCLSECVHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 126 ~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLvf 158 (230)
.+|..|.++|++||.|.+
T Consensus 206 ---------------~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 206 ---------------EFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp ---------------GGHHHHHHHEEEEEEEEE
T ss_pred ---------------HHHHHHHHHcCCCCEEEE
Confidence 146678889999999855
No 146
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=78.19 E-value=0.7 Score=41.37 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.2
Q ss_pred HHHHHHHHhhccccCCEEE
Q 039679 139 VHDLLDLAGRILVMGGRLV 157 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLv 157 (230)
+..++..+.++|+|||.++
T Consensus 148 ~~~~l~~~~~~LkpgG~li 166 (376)
T 3r0q_C 148 FDSVISARDRWLKPTGVMY 166 (376)
T ss_dssp HHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCeEEE
Confidence 4668888899999999984
No 147
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=77.80 E-value=2.3 Score=33.80 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=36.0
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCC------------CCccccCCceeEeeEEEecCCceeEEEEEEEEc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTR------------NPFPEHLCFKLVASSEQILSSRYSRVLLTMVKI 202 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~------------~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~~K~ 202 (230)
..+|+.+.++|++||++++.-+...+.... ..+-...||.++.... +.. ....++.+|.
T Consensus 123 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~--~~~~~~~~k~ 193 (219)
T 3dh0_A 123 LKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE--VGK--YCFGVYAMIV 193 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE--ETT--TEEEEEEECC
T ss_pred HHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe--eCC--ceEEEEEEec
Confidence 568889999999999999986654332111 1222345888887632 222 3344555553
No 148
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=77.68 E-value=1.2 Score=38.79 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.5
Q ss_pred HHHHHhhccccCCEEEEEEeec
Q 039679 142 LLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
++..+.++|++||+|++..|..
T Consensus 201 ~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 201 TLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp THHHHGGGEEEEEEEEEEESSH
T ss_pred HHHHHHHhcCCCcEEEEEeCCH
Confidence 5788999999999999988865
No 149
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=77.36 E-value=2.4 Score=37.33 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=19.6
Q ss_pred HHHHHHhhccccCCEEEEEEeec
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+++.+.+.|++||.+|.+....
T Consensus 179 eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 179 AFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEecCCc
Confidence 47888999999999999996653
No 150
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=77.29 E-value=2.8 Score=34.58 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+|..+.++|+|||++++.-+...
T Consensus 146 ~~~l~~~~~~L~pgG~l~i~~~~~~ 170 (273)
T 3bus_A 146 GRALREMARVLRPGGTVAIADFVLL 170 (273)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHcCCCeEEEEEEeecc
Confidence 5688999999999999999887653
No 151
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=77.21 E-value=2.3 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=11.0
Q ss_pred cccceeEeCCCCccc
Q 039679 88 EVFDAIICDPPYGVR 102 (230)
Q Consensus 88 e~~DaIvtDPPYGiR 102 (230)
+.||.||+||||+..
T Consensus 109 ~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 109 GKYDTWIMNPPFGSV 123 (200)
T ss_dssp CCEEEEEECCCC---
T ss_pred CCeeEEEECCCchhc
Confidence 379999999999874
No 152
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=77.20 E-value=0.91 Score=38.82 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=37.6
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILV 151 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~ 151 (230)
....|....++. +.||+|+|..++--- |. .+....++..+.++|+
T Consensus 174 ~~~~d~~~~~~~----~~fD~v~~~~~~~~~-------------------------~~------~~~~~~~l~~~~~~Lk 218 (305)
T 3ocj_A 174 LHRQDAWKLDTR----EGYDLLTSNGLNIYE-------------------------PD------DARVTELYRRFWQALK 218 (305)
T ss_dssp EEECCGGGCCCC----SCEEEEECCSSGGGC-------------------------CC------HHHHHHHHHHHHHHEE
T ss_pred EEECchhcCCcc----CCeEEEEECChhhhc-------------------------CC------HHHHHHHHHHHHHhcC
Confidence 355666666654 389999997655320 00 1224468999999999
Q ss_pred cCCEEEEEEee
Q 039679 152 MGGRLVYFYPV 162 (230)
Q Consensus 152 ~gGRLvf~lP~ 162 (230)
|||++++....
T Consensus 219 pgG~l~i~~~~ 229 (305)
T 3ocj_A 219 PGGALVTSFLT 229 (305)
T ss_dssp EEEEEEEECCC
T ss_pred CCeEEEEEecC
Confidence 99999986543
No 153
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=76.76 E-value=2.2 Score=36.84 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=16.8
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCcccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRA 103 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa 103 (230)
++..|....++ +.||.||+||||.+-.
T Consensus 94 ~~~~D~~~~~~-----~~~D~Vv~n~py~~~~ 120 (299)
T 2h1r_A 94 VYEGDAIKTVF-----PKFDVCTANIPYKISS 120 (299)
T ss_dssp C----CCSSCC-----CCCSEEEEECCGGGHH
T ss_pred EEECchhhCCc-----ccCCEEEEcCCccccc
Confidence 35566665544 2689999999998743
No 154
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=76.48 E-value=1.6 Score=38.55 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=44.5
Q ss_pred CEEEEecCCHHHHHHHHHHHHHHH-H---HHHHhhcCCCCCCCCCcccccceeEeCCCCcccccccccccccCCCCCCCC
Q 039679 45 PFHFVNLPSEDIARSIANRIWITN-A---YWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPD 120 (230)
Q Consensus 45 pf~vV~lp~e~~a~~l~~Rsil~~-I---~~ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~~rk~~~~~~~~~~~~~ 120 (230)
...-|++. + +...+++.+-.. + ...+.+|....++.. +.||+||++++.-.-..
T Consensus 91 ~v~gvD~s--~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~Iis~~~~~~l~~---------------- 148 (349)
T 3q7e_A 91 KVIGIECS--S-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDIIISEWMGYCLFY---------------- 148 (349)
T ss_dssp EEEEEECS--T-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEEEECCCBBTBTB----------------
T ss_pred EEEEECcH--H-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCC---CceEEEEEccccccccC----------------
Confidence 45666663 3 444444433221 1 114566766666553 38999999985222000
Q ss_pred CCccCCCCCCCCcchHHHHHHHHHHHhhccccCCEEE
Q 039679 121 DKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLV 157 (230)
Q Consensus 121 ~~~~~~ip~~~~y~~~~~~~dLL~~Aa~~L~~gGRLv 157 (230)
.+.+..++..+.++|+|||+++
T Consensus 149 ---------------~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 149 ---------------ESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp ---------------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------chhHHHHHHHHHHhCCCCCEEc
Confidence 0124568888899999999983
No 155
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=76.44 E-value=0.93 Score=37.51 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=18.4
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.++|..++++|+|||++++...
T Consensus 119 ~~~l~~~~r~LkpGG~l~i~~~ 140 (225)
T 3p2e_A 119 RDILSNVADLAKKEAHFEFVTT 140 (225)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEEe
Confidence 3578899999999999999543
No 156
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=76.42 E-value=1.8 Score=38.48 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.0
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+|..+.++|+|||+|++.-+...
T Consensus 183 ~~~l~~~~r~LkpgG~l~i~~~~~~ 207 (383)
T 4fsd_A 183 LALFKEIHRVLRDGGELYFSDVYAD 207 (383)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHcCCCCEEEEEEeccc
Confidence 5788999999999999998766543
No 157
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=76.33 E-value=2.6 Score=33.93 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=27.7
Q ss_pred HHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeE
Q 039679 142 LLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASS 184 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~ 184 (230)
+++.+.++|++||++++..++..........-...|+.++...
T Consensus 136 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 136 LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEEE
Confidence 7889999999999999987765332211122223356665543
No 158
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=76.28 E-value=1 Score=36.44 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.6
Q ss_pred HHHhhccccCCEEEEEEee
Q 039679 144 DLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 144 ~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.+.++|++||++++.+|.
T Consensus 177 ~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 177 EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEEEcc
Confidence 5668899999999999886
No 159
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=75.99 E-value=2.1 Score=34.56 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=20.5
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|++||++++..+..
T Consensus 133 ~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 133 LRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHhCCCeEEEEEEcCC
Confidence 467899999999999999987654
No 160
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=75.05 E-value=2.4 Score=35.76 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..++..+.++|+|||++++.-|.
T Consensus 106 ~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 106 ETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEEEecc
Confidence 47889999999999999998876
No 161
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=74.91 E-value=2.8 Score=34.21 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+|||++++.-+..
T Consensus 104 ~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 104 RKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred HHHHHHHHHHcCCCcEEEEEEcCC
Confidence 567889999999999999986654
No 162
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=74.85 E-value=2.6 Score=34.70 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhccccCCEEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
-...+|..+.++|+|||++++-
T Consensus 129 ~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 129 ELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 3467889999999999999884
No 163
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=74.40 E-value=2.7 Score=34.24 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..++..+.++|+|||++++..+..
T Consensus 121 ~~~l~~~~~~L~pgG~l~~~~~~~ 144 (263)
T 2yqz_A 121 PKVLAEAIRVLKPGGALLEGWDQA 144 (263)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCcEEEEEecCC
Confidence 567889999999999999886554
No 164
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=73.91 E-value=2.2 Score=34.53 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=14.0
Q ss_pred HHHHHHhhccccCCEEEEE
Q 039679 141 DLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~ 159 (230)
++++.+ ++|+|||++++-
T Consensus 152 ~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 152 LLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp HHHHHT-TCCCTTCEEEES
T ss_pred HHHHhc-cccCCCeEEEEe
Confidence 456556 999999999763
No 165
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=73.78 E-value=3.2 Score=33.26 Aligned_cols=24 Identities=33% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|++||++++..|..
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCC
Confidence 468888999999999999987754
No 166
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=73.55 E-value=2.3 Score=35.35 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.9
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+|+.++++|++||+|++..+.
T Consensus 148 ~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 148 PTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESC
T ss_pred HHHHHHHHHHCCCCCEEEEEeCC
Confidence 56899999999999999998553
No 167
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=73.38 E-value=1.6 Score=38.43 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhccccCCEEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+.+..+|..|..+|+||||||++-
T Consensus 210 ~~L~~~L~~a~~~L~~gGrl~vis 233 (285)
T 1wg8_A 210 NALKEFLEQAAEVLAPGGRLVVIA 233 (285)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEe
Confidence 456788999999999999999883
No 168
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=72.71 E-value=4.4 Score=35.29 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=17.4
Q ss_pred HHHHHHhhccccCCEEEEEEe
Q 039679 141 DLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..|..+.++|+|||++++=++
T Consensus 172 ~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 172 RVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp HHHHHHHHHCCTTCEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEEeC
Confidence 478889999999999887544
No 169
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=72.68 E-value=3.5 Score=35.49 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhccccCCEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf 158 (230)
+....++....+.|+|||.|++
T Consensus 229 ~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 229 TTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEE
Confidence 3457899999999999999965
No 170
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=72.64 E-value=2.5 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+|..+.++|+|||++++.-|.
T Consensus 122 ~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 122 EEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEEEcC
Confidence 36788999999999999998764
No 171
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=72.28 E-value=1.9 Score=32.91 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=25.6
Q ss_pred HHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeE
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASS 184 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~ 184 (230)
.++++.+.++ +||++++..|...........-...|+.+....
T Consensus 113 ~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 113 EKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp HHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEE
Confidence 4567777777 999999998765432212223334466655443
No 172
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=71.91 E-value=1.8 Score=39.18 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccccCCEEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+.+..+|..|..+|++|||||++-
T Consensus 251 ~~L~~~L~~a~~~L~~gGRl~VIS 274 (347)
T 3tka_A 251 EEIEQALKSSLNVLAPGGRLSIIS 274 (347)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 456778999999999999999983
No 173
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=70.27 E-value=3 Score=34.39 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.1
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..++..+.++|++||+|++...
T Consensus 153 ~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 153 NTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHcCCCCEEEEEec
Confidence 5789999999999999998743
No 174
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=69.92 E-value=4.3 Score=34.43 Aligned_cols=45 Identities=9% Similarity=-0.103 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccc---c--CCEEEEEEeeccCC-----CCCCCccccCC-ceeEee
Q 039679 139 VHDLLDLAGRILV---M--GGRLVYFYPVLRED-----STRNPFPEHLC-FKLVAS 183 (230)
Q Consensus 139 ~~dLL~~Aa~~L~---~--gGRLvf~lP~~~~~-----~~~~~lp~h~g-l~li~~ 183 (230)
...++..+.++|+ + ||++++++-..... ..........| |.+...
T Consensus 179 ~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 179 HDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence 3568888899999 9 99987765443211 11112334458 887765
No 175
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=69.68 E-value=1.6 Score=35.15 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=16.0
Q ss_pred HHhhccccCCEEEEEEeec
Q 039679 145 LAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 145 ~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+.++|++||++++..|..
T Consensus 150 ~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 150 KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp HHHHTEEEEEEEEEEECSS
T ss_pred HHHHHcCCCcEEEEEEcCC
Confidence 4678999999999997754
No 176
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=69.13 E-value=7 Score=31.50 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
.++|+.++++|+|||++++..+
T Consensus 133 ~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 133 SHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp HHHHHHHHHHHTTSCEEEEEES
T ss_pred HHHHHHHHHHcCCCCEEEEEeC
Confidence 6789999999999999998853
No 177
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=69.09 E-value=1.7 Score=34.68 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHhhccccCCEEEEEEeec
Q 039679 144 DLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 144 ~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.+.++|++||++++..|..
T Consensus 161 ~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 161 EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp HHHHHTEEEEEEEEEEESSS
T ss_pred HHHHHHcCCCcEEEEEECCC
Confidence 36789999999999997754
No 178
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=68.80 E-value=1.2 Score=41.01 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=11.7
Q ss_pred cccceeEeCCCCccc
Q 039679 88 EVFDAIICDPPYGVR 102 (230)
Q Consensus 88 e~~DaIvtDPPYGiR 102 (230)
+.||.|++||||.--
T Consensus 162 ~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 162 FHPDYIYVDPARRSG 176 (410)
T ss_dssp HCCSEEEECCEEC--
T ss_pred CCceEEEECCCCcCC
Confidence 379999999999763
No 179
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=68.70 E-value=4.6 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHHhhccccCC--EEEEE
Q 039679 142 LLDLAGRILVMGG--RLVYF 159 (230)
Q Consensus 142 LL~~Aa~~L~~gG--RLvf~ 159 (230)
.|+.+.++|+||| ++++-
T Consensus 165 ~L~~~~r~LkpGG~~~fv~k 184 (265)
T 2oxt_A 165 ILELLEKWKVKNPSADFVVK 184 (265)
T ss_dssp HHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHhccCCCeEEEEE
Confidence 7899999999999 77763
No 180
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=68.54 E-value=3.3 Score=32.74 Aligned_cols=18 Identities=28% Similarity=0.019 Sum_probs=15.7
Q ss_pred HHhhccccCCEEEEEEee
Q 039679 145 LAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 145 ~Aa~~L~~gGRLvf~lP~ 162 (230)
.+.++|++||++++.+|.
T Consensus 159 ~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 159 ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp HHHHTEEEEEEEEEEECS
T ss_pred HHHHhcccCcEEEEEEcC
Confidence 367899999999999886
No 181
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=68.22 E-value=2.7 Score=35.78 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHHHhhccccCCEEEEEEe
Q 039679 142 LLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP 161 (230)
+++.+.++|+|||.+++...
T Consensus 153 ~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 153 RIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp HHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEcC
Confidence 78899999999999999754
No 182
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=67.95 E-value=2.6 Score=36.86 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhccccCCEEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
+.+...|..|..+|++||||+++-
T Consensus 222 ~~l~~~l~~~~~~l~~ggr~~vis 245 (301)
T 1m6y_A 222 ENLKEFLKKAEDLLNPGGRIVVIS 245 (301)
T ss_dssp HHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEe
Confidence 456788999999999999999984
No 183
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=67.91 E-value=2.6 Score=32.57 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=21.6
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+|..+.++|+|||++++.-|...
T Consensus 81 ~~~l~~~~r~LkpgG~l~~~~~~~~ 105 (176)
T 2ld4_A 81 AEILAEIARILRPGGCLFLKEPVET 105 (176)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEEccccc
Confidence 5689999999999999999877653
No 184
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=67.41 E-value=4.9 Score=34.48 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=16.0
Q ss_pred HHHHHhhccccCC--EEEEE
Q 039679 142 LLDLAGRILVMGG--RLVYF 159 (230)
Q Consensus 142 LL~~Aa~~L~~gG--RLvf~ 159 (230)
.|+.+.++|+||| ++++-
T Consensus 173 ~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 173 VLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp HHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHhccCCCcEEEEE
Confidence 7889999999999 88874
No 185
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=66.36 E-value=2.3 Score=35.55 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=15.1
Q ss_pred HHHhhccccCCEEEEEEeec
Q 039679 144 DLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 144 ~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+.|.++|++||+|+++....
T Consensus 130 e~a~rll~~~G~l~v~~~~~ 149 (244)
T 1qam_A 130 GFAKRLLNTKRSLALFLMAE 149 (244)
T ss_dssp HHHHHHTCTTSHHHHHHTTT
T ss_pred HHHHHHhcCCcchhHHhhhh
Confidence 56888999999887765543
No 186
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=65.44 E-value=1.8 Score=37.05 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCccccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~ 104 (230)
++.+|....++. .||.||+++||.+-..
T Consensus 81 ~~~~D~~~~~~~-----~fD~vv~nlpy~~~~~ 108 (285)
T 1zq9_A 81 VLVGDVLKTDLP-----FFDTCVANLPYQISSP 108 (285)
T ss_dssp EEESCTTTSCCC-----CCSEEEEECCGGGHHH
T ss_pred EEEcceecccch-----hhcEEEEecCcccchH
Confidence 355666655442 5899999999988543
No 187
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=64.75 E-value=7.2 Score=32.17 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+ ||++++.-+..
T Consensus 111 ~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 111 EKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp HHHHHHHHHHBC-SSCEEEEEECG
T ss_pred HHHHHHHHHHhC-CcEEEEEEcCC
Confidence 578899999999 99998887754
No 188
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=64.57 E-value=3.1 Score=38.76 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.8
Q ss_pred HHHHHHhhccccCCEEE
Q 039679 141 DLLDLAGRILVMGGRLV 157 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLv 157 (230)
+.+..+.++|++||+++
T Consensus 244 ~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 244 ESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp HHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEE
Confidence 34557889999999996
No 189
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=62.78 E-value=5.2 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHHHhhccccCCEEEEEEeecc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+..++..+.++|+|||++++-.|...
T Consensus 119 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 119 LFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp HHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 46788999999999999999988653
No 190
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=62.21 E-value=3.3 Score=35.05 Aligned_cols=23 Identities=9% Similarity=-0.068 Sum_probs=19.2
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..++..++++|+|||+|++|-..
T Consensus 115 ~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 115 DRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEEEECC
Confidence 35788899999999999998643
No 191
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=61.63 E-value=6.2 Score=36.06 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=10.2
Q ss_pred ccceeEeCCCC
Q 039679 89 VFDAIICDPPY 99 (230)
Q Consensus 89 ~~DaIvtDPPY 99 (230)
.||+||+||||
T Consensus 353 ~fD~Vv~dPPr 363 (425)
T 2jjq_A 353 GFDTVIVDPPR 363 (425)
T ss_dssp TCSEEEECCCT
T ss_pred CCCEEEEcCCc
Confidence 68999999996
No 192
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=60.42 E-value=6.5 Score=36.39 Aligned_cols=20 Identities=15% Similarity=-0.052 Sum_probs=17.4
Q ss_pred HHHHHHHhhccccCCEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~ 159 (230)
...|+.+.++|+|||++++-
T Consensus 304 ~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 304 RTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEE
Confidence 56788999999999999883
No 193
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=60.29 E-value=5.3 Score=33.30 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+....+|+.+.++|+|||++++..|..
T Consensus 152 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 152 SEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 345678999999999999999998864
No 194
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=59.20 E-value=3.8 Score=33.07 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=15.3
Q ss_pred HHHhhccccCCEEEEEEee
Q 039679 144 DLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 144 ~~Aa~~L~~gGRLvf~lP~ 162 (230)
+.+.++|++||+|++-++.
T Consensus 178 ~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 178 TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHHHHTEEEEEEEEEEESC
T ss_pred HHHHHHhcCCCEEEEEEec
Confidence 5678899999999887653
No 195
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=58.84 E-value=5 Score=32.02 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHh-hccccCCEEEEEEeec
Q 039679 140 HDLLDLAG-RILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa-~~L~~gGRLvf~lP~~ 163 (230)
..+|..+. ++|+|||++++..|..
T Consensus 120 ~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 120 VALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 46888999 9999999999998865
No 196
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=58.11 E-value=5.8 Score=33.41 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=20.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...|..+.++|+|||++++..+..
T Consensus 152 ~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 152 PATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHcCCCcEEEEEEecC
Confidence 567889999999999999987653
No 197
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=57.17 E-value=5.5 Score=34.92 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHhhccccCCEEEE
Q 039679 141 DLLDLAGRILVMGGRLVY 158 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf 158 (230)
+.+..+.++|++||++++
T Consensus 136 ~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 136 ESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp HHHHHGGGGEEEEEEEES
T ss_pred HHHHHHHhhcCCCeEEEE
Confidence 455678899999999963
No 198
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=56.83 E-value=12 Score=30.65 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=17.7
Q ss_pred HHHHHHhhccccCCEEEEEEeec
Q 039679 141 DLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 141 dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+++....++++||++++.-+..
T Consensus 140 ~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 140 ALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECS
T ss_pred HHHHHHHHHhCCCCEEEEEEecC
Confidence 36778888888899998875543
No 199
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=56.48 E-value=6.8 Score=33.34 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.0
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLRED 166 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~ 166 (230)
...+|+.+.++|+|||++++.-|...+.
T Consensus 200 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 227 (312)
T 3vc1_A 200 LHDLFSEHSRFLKVGGRYVTITGCWNPR 227 (312)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEcccccc
Confidence 5778999999999999999998876543
No 200
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=56.38 E-value=4.8 Score=33.54 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+..+|....++|+|||+|++.-+.
T Consensus 176 ~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 176 YRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHcCCCcEEEEEEee
Confidence 356788899999999999998654
No 201
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=56.38 E-value=3 Score=33.81 Aligned_cols=16 Identities=0% Similarity=0.009 Sum_probs=14.1
Q ss_pred HHHHHhhccccCCEEE
Q 039679 142 LLDLAGRILVMGGRLV 157 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLv 157 (230)
+|..+.++|+|||+++
T Consensus 124 ~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 124 VILRLPELAAPDAHFL 139 (226)
T ss_dssp GGGGHHHHEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEE
Confidence 5677889999999998
No 202
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=56.34 E-value=9.4 Score=32.12 Aligned_cols=27 Identities=7% Similarity=0.045 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
-+..++..+.++|+|||++++.-++..
T Consensus 161 ~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 161 RYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 356789999999999999999877654
No 203
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=55.67 E-value=4.7 Score=34.49 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.8
Q ss_pred ccceeEeCCCCcccc
Q 039679 89 VFDAIICDPPYGVRA 103 (230)
Q Consensus 89 ~~DaIvtDPPYGiRa 103 (230)
.||+|++||||.-+.
T Consensus 164 ~fDvV~lDP~y~~~~ 178 (258)
T 2oyr_A 164 RPQVVYLDPMFPHKQ 178 (258)
T ss_dssp CCSEEEECCCCCCCC
T ss_pred cCCEEEEcCCCCCcc
Confidence 699999999997653
No 204
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=55.62 E-value=6.7 Score=31.79 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|++||++++..|..
T Consensus 112 ~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 112 LAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC
Confidence 468889999999999999998854
No 205
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=55.41 E-value=7.4 Score=35.52 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.9
Q ss_pred HHHHHHHHhhccccCCEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
...+++.+.+.|++||.+|.-
T Consensus 310 t~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 310 LRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEe
Confidence 467889999999999999754
No 206
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=55.18 E-value=9.6 Score=31.61 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHhhccccCCEEEEEEeecc
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
...+|+.+.++|+|||++++..|...
T Consensus 147 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 147 YDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 46788899999999999999887753
No 207
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=54.86 E-value=9.8 Score=30.00 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.4
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+|||++++..|..
T Consensus 125 ~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 125 NVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECB
T ss_pred HHHHHHHHHhcCCCCEEEEEeccc
Confidence 457899999999999999987654
No 208
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=54.44 E-value=9.9 Score=32.17 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
...+++.+.++|+|||++++..|...+
T Consensus 173 ~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 173 YDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 467888999999999999998887543
No 209
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=54.43 E-value=7.9 Score=30.53 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+..+|..+.++|++||++++..|..
T Consensus 132 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 132 QMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 34678999999999999999977654
No 210
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=54.33 E-value=14 Score=31.53 Aligned_cols=22 Identities=5% Similarity=-0.198 Sum_probs=17.6
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...+....++| |||++++-++.
T Consensus 129 ~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 129 RRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HHHHHHHHHhC-cCcEEEEEecc
Confidence 45677777889 99999988775
No 211
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=53.90 E-value=4.7 Score=36.67 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=11.2
Q ss_pred ccceeEeCCCCc
Q 039679 89 VFDAIICDPPYG 100 (230)
Q Consensus 89 ~~DaIvtDPPYG 100 (230)
.||+||+||||.
T Consensus 356 ~fD~Vv~dPPr~ 367 (433)
T 1uwv_A 356 GFDKVLLDPARA 367 (433)
T ss_dssp CCSEEEECCCTT
T ss_pred CCCEEEECCCCc
Confidence 799999999996
No 212
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=53.39 E-value=6.2 Score=33.06 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=40.5
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCCC------------CC---CCccccCCceeEeeEEEe----cCC---ceeEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLREDS------------TR---NPFPEHLCFKLVASSEQI----LSS---RYSRVL 196 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~------------~~---~~lp~h~gl~li~~~~Q~----~~~---k~sR~L 196 (230)
...+|..+.++|+|||+|++.-......+ .. ..+-...||.++...... +.. .+.|.+
T Consensus 194 ~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (289)
T 2g72_A 194 FQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVF 273 (289)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEE
Confidence 46788999999999999998632211000 00 012234599998877555 222 367888
Q ss_pred EEEEEcC
Q 039679 197 LTMVKIG 203 (230)
Q Consensus 197 it~~K~~ 203 (230)
+.+.|..
T Consensus 274 ~~~~~~~ 280 (289)
T 2g72_A 274 FAWAQKV 280 (289)
T ss_dssp EEEEEEC
T ss_pred EEEEecc
Confidence 8887643
No 213
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=53.24 E-value=8 Score=32.90 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.3
Q ss_pred HHHHHHHhhccccCCEEEEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~l 160 (230)
.++++..+++|++||+|+.|-
T Consensus 193 ~~~l~~l~~~L~pGG~l~tys 213 (257)
T 2qy6_A 193 QNLFNAMARLARPGGTLATFT 213 (257)
T ss_dssp HHHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHcCCCcEEEEEe
Confidence 468999999999999999763
No 214
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=52.83 E-value=8.6 Score=30.72 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.2
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|+.+.++|+|||++++-+|..
T Consensus 116 ~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 116 VKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 4678899999999999999877754
No 215
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=52.82 E-value=7.1 Score=31.72 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.++|++||++++-.|..
T Consensus 124 ~~~~l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 124 FDDICKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 3578899999999999999987754
No 216
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=52.68 E-value=4.7 Score=34.74 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.2
Q ss_pred HHhhccccCCEEEEEEeec
Q 039679 145 LAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 145 ~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+.++|+|||++++-.++.
T Consensus 160 ~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 160 TWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp HHHHHEEEEEEEEEEBCBG
T ss_pred HHHHhcCCCcEEEEEECCC
Confidence 5567999999999886654
No 217
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=52.20 E-value=8.7 Score=31.05 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+..+|..+.++|++||++++.-|..
T Consensus 164 ~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 164 LAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHhcCCCeEEEEEEccC
Confidence 4678999999999999999976654
No 218
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=51.78 E-value=7.6 Score=31.93 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.++|+|||++++..|..
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 4568889999999999999988764
No 219
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=51.10 E-value=10 Score=30.17 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.++|++||++++-+|..
T Consensus 121 ~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 121 LKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCH
Confidence 4678899999999999999877754
No 220
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=50.95 E-value=10 Score=28.63 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.0
Q ss_pred HHHHHHHhhccccCCEEEEEEeecc
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
..+++.+.++|++||++++.-+...
T Consensus 92 ~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 92 QHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 5788899999999999999866543
No 221
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=50.80 E-value=8.2 Score=30.21 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.+..+|..+.++|++||++++..+..
T Consensus 124 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 124 RFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 45778999999999999999987754
No 222
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=50.77 E-value=7.6 Score=33.49 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=21.3
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..++++|+|||++++-.|..
T Consensus 149 ~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 149 ATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCH
Confidence 578999999999999999988853
No 223
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=50.71 E-value=9.2 Score=31.90 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=22.7
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
...+|..+.++|+|||++++.-|...+
T Consensus 166 ~~~~l~~~~~~LkpgG~l~~~~~~~~~ 192 (297)
T 2o57_A 166 KLKVFQECARVLKPRGVMAITDPMKED 192 (297)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 367889999999999999999886543
No 224
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=50.40 E-value=9 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeecc
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
-...+|..+.++|+|||+|++-.|...
T Consensus 168 ~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 168 DRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 456789999999999999999887654
No 225
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=50.07 E-value=5.7 Score=32.28 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHhhccccCCEEEEEEee
Q 039679 145 LAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 145 ~Aa~~L~~gGRLvf~lP~ 162 (230)
.+.++|++||++++-.|.
T Consensus 174 ~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 174 PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp HHHHTEEEEEEEEEEECS
T ss_pred HHHHhcCCCcEEEEEEec
Confidence 467899999999988764
No 226
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=49.68 E-value=11 Score=30.87 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.2
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+|||++++..+..
T Consensus 120 ~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 120 ASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCCEEEEEEcCC
Confidence 468889999999999999976654
No 227
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=49.47 E-value=8.1 Score=30.30 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|++||++++..|..
T Consensus 132 ~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 132 IELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHHHHHhCCCeEEEEEecCc
Confidence 367889999999999999987754
No 228
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=49.28 E-value=8.3 Score=30.31 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=21.2
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|+.+.++|++||++++..|..
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCc
Confidence 478899999999999999998864
No 229
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=48.82 E-value=6.5 Score=33.31 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=11.0
Q ss_pred cccceeEeCCCCccc
Q 039679 88 EVFDAIICDPPYGVR 102 (230)
Q Consensus 88 e~~DaIvtDPPYGiR 102 (230)
+.||+|++||||.-+
T Consensus 160 ~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 160 GKPDIVYLDPMYPER 174 (258)
T ss_dssp CCCSEEEECCCC---
T ss_pred CCccEEEECCCCCCc
Confidence 379999999999765
No 230
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=48.81 E-value=8.9 Score=31.85 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+|||++++..|..
T Consensus 153 ~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 153 RSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHHcCCCeEEEEEEeCC
Confidence 568899999999999999988743
No 231
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=48.59 E-value=9.6 Score=30.86 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
-...+|..+.++|+|||+|++..+.
T Consensus 176 ~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 176 AYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHhhCCCCcEEEEEecC
Confidence 3567888999999999999987654
No 232
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=47.58 E-value=9.4 Score=31.67 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.7
Q ss_pred HHHHHHHhhccccCCEEEEEEeec
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
..+|..+.++|+|||++++..|..
T Consensus 134 ~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 134 EAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred HHHHHHHHHhcCCCcEEEEEecCC
Confidence 467889999999999999988864
No 233
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=46.82 E-value=17 Score=32.66 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeeccCC
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLRED 166 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~ 166 (230)
=+..+|..-++-|+||||+|+.++...+.
T Consensus 187 D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~ 215 (359)
T 1m6e_X 187 DHALFLRCRAQEVVPGGRMVLTILGRRSE 215 (359)
T ss_dssp HHHHHHHHHHHHBCTTCEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34556888899999999999999876543
No 234
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=46.34 E-value=10 Score=30.55 Aligned_cols=26 Identities=8% Similarity=0.053 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
-...+|..+.++|+|||++++..|..
T Consensus 175 ~~~~~l~~~~~~LkpgG~l~i~~~~~ 200 (254)
T 1xtp_A 175 DFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 35678899999999999999987643
No 235
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=46.14 E-value=14 Score=29.16 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=19.5
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+|..+.++|+|||++++-+..
T Consensus 120 ~~~l~~~~~~LkpgG~l~~~~~~ 142 (218)
T 3mq2_A 120 PEMLRGMAAVCRPGASFLVALNL 142 (218)
T ss_dssp SHHHHHHHHTEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHcCCCcEEEEEecc
Confidence 56788999999999999986654
No 236
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=45.38 E-value=13 Score=30.02 Aligned_cols=25 Identities=20% Similarity=0.358 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
-...+|..+.++|+|||++++-+|.
T Consensus 123 ~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 123 DLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4567889999999999999987775
No 237
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=44.91 E-value=9.4 Score=32.08 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=19.2
Q ss_pred HHHHHHHHhhccccCCEEEEEEe
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
...+++.+.++|+|||+|++|..
T Consensus 128 ~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 128 FEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEec
Confidence 35788999999999999998543
No 238
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=44.88 E-value=12 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.++|+|||++++..|..
T Consensus 134 ~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 134 ADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCh
Confidence 4678999999999999999998854
No 239
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=44.39 E-value=13 Score=33.61 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=22.1
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLRE 165 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~ 165 (230)
+..+|..-++.|+||||+|+-++...+
T Consensus 204 ~~~fL~~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 204 LAEFLRARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 344688889999999999999996643
No 240
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.14 E-value=74 Score=21.75 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=37.1
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 18 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 1x5s_A 18 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 72 (102)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3445567788999999999864344433222223356799999999998877654
No 241
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=43.95 E-value=13 Score=31.29 Aligned_cols=23 Identities=35% Similarity=0.249 Sum_probs=19.4
Q ss_pred HHHHHHHhhccccCCEEEEEEee
Q 039679 140 HDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
..+|..+.++|+|||+|++.=+.
T Consensus 158 ~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 158 QALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hHHHHHHHHHcCCCcEEEEEecc
Confidence 56899999999999999886443
No 242
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=43.83 E-value=14 Score=30.40 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=16.9
Q ss_pred HHHHHHHHhh-ccccCCEEEEE
Q 039679 139 VHDLLDLAGR-ILVMGGRLVYF 159 (230)
Q Consensus 139 ~~dLL~~Aa~-~L~~gGRLvf~ 159 (230)
+..+|..+.+ +|++||+|++-
T Consensus 165 ~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 165 TFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEC
T ss_pred HHHHHHHHHHhhCCCCCEEEEE
Confidence 3457778886 99999999884
No 243
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=40.96 E-value=16 Score=29.35 Aligned_cols=24 Identities=13% Similarity=-0.140 Sum_probs=19.8
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...++..+.++|+|||++++.-+.
T Consensus 142 ~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 142 RELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 357888999999999998887554
No 244
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=40.82 E-value=13 Score=29.44 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
-...+|..+.++|+|||++++-.+..
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 119 ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 35678899999999999998865443
No 245
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=40.75 E-value=12 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.2
Q ss_pred HHHHhhccccCCEEEEEEeecc
Q 039679 143 LDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 143 L~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
+..+.++|+|||++++..|...
T Consensus 161 l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 161 AEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp HHHHHHHEEEEEEEEEEEECTT
T ss_pred HHHHHHhcCCCcEEEEEEcCHH
Confidence 6788999999999999988753
No 246
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=40.33 E-value=13 Score=30.75 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHhhccccCCEEEEEEe-eccCCCC--------------------CCCccccCCceeEeeEEEecCCc--eeEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP-VLREDST--------------------RNPFPEHLCFKLVASSEQILSSR--YSRVL 196 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP-~~~~~~~--------------------~~~lp~h~gl~li~~~~Q~~~~k--~sR~L 196 (230)
..+|..+.++|+|||+++++.- ....... ...+....||.++.....+..+. --..|
T Consensus 117 ~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l 196 (232)
T 3opn_A 117 DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFL 196 (232)
T ss_dssp GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEE
T ss_pred HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHH
Confidence 5688999999999999998641 1110000 00122345999988877776543 34456
Q ss_pred EEEEEcC
Q 039679 197 LTMVKIG 203 (230)
Q Consensus 197 it~~K~~ 203 (230)
+-++|..
T Consensus 197 ~~~~~~~ 203 (232)
T 3opn_A 197 VHLLKDG 203 (232)
T ss_dssp EEEEESS
T ss_pred HHHhhcc
Confidence 6677743
No 247
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=40.28 E-value=16 Score=29.26 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=20.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+++.+.++|+|||++++.....
T Consensus 150 ~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 150 RPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHCCCCcEEEEEEecc
Confidence 4578899999999999998875543
No 248
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=39.84 E-value=8 Score=33.65 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=22.7
Q ss_pred HHhhcCCCCCCCCCcccccceeEeCCCCccccc
Q 039679 72 FAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104 (230)
Q Consensus 72 ll~~D~t~~p~r~~l~e~~DaIvtDPPYGiRa~ 104 (230)
++.+|....+|... .||+||+++||.+...
T Consensus 100 vi~gD~l~~~~~~~---~fD~Iv~NlPy~is~p 129 (295)
T 3gru_A 100 IIWGDALKVDLNKL---DFNKVVANLPYQISSP 129 (295)
T ss_dssp EEESCTTTSCGGGS---CCSEEEEECCGGGHHH
T ss_pred EEECchhhCCcccC---CccEEEEeCcccccHH
Confidence 45677776666553 6999999999998654
No 249
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=39.74 E-value=18 Score=28.66 Aligned_cols=22 Identities=0% Similarity=-0.090 Sum_probs=17.4
Q ss_pred HHHHHHHHhhccccCCEEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYFY 160 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~l 160 (230)
...+++.+.++|+|||++.++.
T Consensus 119 ~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 119 RERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HHHHHHHHHHHSCSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEE
Confidence 4567899999999999955543
No 250
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.68 E-value=85 Score=21.12 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=35.9
Q ss_pred hhccCCCHHHHHHHHHHcCCCccc-cccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDAL-EWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~-~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++ .+..........+|..|++.+.++|.+.++
T Consensus 12 nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 12 NLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 334566778899999888863333 322221233357899999999998877543
No 251
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=39.18 E-value=14 Score=31.18 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeeccC-------------CC--------CCCCcccc--CCceeEeeE--EEecCCce
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVLRE-------------DS--------TRNPFPEH--LCFKLVASS--EQILSSRY 192 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~~~-------------~~--------~~~~lp~h--~gl~li~~~--~Q~~~~k~ 192 (230)
-+..++..+.++|+|||+|++--+.... .+ ....+-.. .||..+... .+.....|
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~ 277 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGF 277 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC----------
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCc
Confidence 4567899999999999999874321110 00 00011123 699766554 23334569
Q ss_pred eEEEEEEEEcC
Q 039679 193 SRVLLTMVKIG 203 (230)
Q Consensus 193 sR~Lit~~K~~ 203 (230)
.|.++.++|.+
T Consensus 278 ~r~i~~~~k~~ 288 (292)
T 3g07_A 278 QRPVYLFHKAR 288 (292)
T ss_dssp -CCCEEEECCC
T ss_pred cceEEEEEcCC
Confidence 99999999864
No 252
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.66 E-value=79 Score=21.22 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=35.3
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 12 nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 12 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp SCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 334566778888888888753334333222223356799999999998877654
No 253
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=38.14 E-value=29 Score=32.23 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=15.6
Q ss_pred HHHHhhccccCCEEEEEEeecc
Q 039679 143 LDLAGRILVMGGRLVYFYPVLR 164 (230)
Q Consensus 143 L~~Aa~~L~~gGRLvf~lP~~~ 164 (230)
|....+.|+||||++..=+...
T Consensus 271 L~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 271 LKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHHTTSCTTCEEEESSCSSC
T ss_pred HHHHHHcCCCCcEEEEeecccC
Confidence 3455689999999987644443
No 254
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=38.11 E-value=11 Score=32.05 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=9.1
Q ss_pred ceeEeCCCCcc
Q 039679 91 DAIICDPPYGV 101 (230)
Q Consensus 91 DaIvtDPPYGi 101 (230)
|.|-|||||=.
T Consensus 166 ~fvY~DPPY~~ 176 (259)
T 1yf3_A 166 DFVYVDPPYLI 176 (259)
T ss_dssp EEEEECCCCTT
T ss_pred eEEEECCCCCC
Confidence 67999999943
No 255
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=37.90 E-value=23 Score=29.78 Aligned_cols=25 Identities=20% Similarity=0.075 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.+.|+|||+|++..+..
T Consensus 175 ~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 175 VDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred HHHHHHHHHHhCCCCcEEEEEEecC
Confidence 4578999999999999999887664
No 256
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.82 E-value=95 Score=21.16 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=35.1
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 20 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34556678888888888753344332222223357899999999998877654
No 257
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=37.61 E-value=18 Score=32.80 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHHHHHHHhhccccCCEEEEEEeeccCC
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVLRED 166 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~~~~ 166 (230)
+..+|..-++-|+||||+|+-++.....
T Consensus 204 ~~~FL~~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 204 FTTFLRIHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHHHHHHHhccCCeEEEEEecCCCc
Confidence 3456888899999999999999876443
No 258
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=37.47 E-value=80 Score=20.19 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=34.8
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.+
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 3456677888888888886334433222222335689999999999887654
No 259
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=36.67 E-value=17 Score=32.18 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...+|..+.++|+|||++++-.|.
T Consensus 187 ~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 187 VQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 467889999999999999999885
No 260
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=36.62 E-value=12 Score=32.30 Aligned_cols=11 Identities=45% Similarity=0.769 Sum_probs=9.3
Q ss_pred ceeEeCCCCcc
Q 039679 91 DAIICDPPYGV 101 (230)
Q Consensus 91 DaIvtDPPYGi 101 (230)
|.|-|||||=.
T Consensus 189 ~fvY~DPPY~~ 199 (284)
T 2dpm_A 189 DFVYFDPPYIP 199 (284)
T ss_dssp CEEEECCCCCC
T ss_pred CEEEeCCCccc
Confidence 67999999954
No 261
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=36.53 E-value=19 Score=31.52 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=18.9
Q ss_pred HHHHHHHhhccccCCEEEEEEe
Q 039679 140 HDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
..+++.+.++|+|||+|++-..
T Consensus 202 ~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 202 RRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp HHHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEEcC
Confidence 5688999999999999998753
No 262
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=36.48 E-value=12 Score=32.24 Aligned_cols=10 Identities=50% Similarity=1.421 Sum_probs=8.6
Q ss_pred ceeEeCCCCc
Q 039679 91 DAIICDPPYG 100 (230)
Q Consensus 91 DaIvtDPPYG 100 (230)
|.|-|||||=
T Consensus 176 ~fvY~DPPY~ 185 (278)
T 2g1p_A 176 SVVYCDPPYA 185 (278)
T ss_dssp EEEEECCSCC
T ss_pred CEEEeCCccc
Confidence 6699999994
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=36.32 E-value=83 Score=20.05 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=34.8
Q ss_pred ccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 11 LLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 11 h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 8 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 8 SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 3456678899999888864444432222223357899999999998877553
No 264
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=36.16 E-value=99 Score=20.90 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=35.2
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 34566778899998888853333332222223357899999999998877654
No 265
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=35.63 E-value=16 Score=30.54 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=17.4
Q ss_pred HHHHHHHHhhccccCCEEEEE
Q 039679 139 VHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
...++..++++|+|||+++++
T Consensus 170 ~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 170 HDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp HHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEE
Confidence 356788999999999999654
No 266
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=34.34 E-value=32 Score=29.63 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.6
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|..+.+.|+|||+|++.=+..
T Consensus 265 ~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 265 SVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 3678999999999999998865543
No 267
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=33.89 E-value=31 Score=30.03 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=15.4
Q ss_pred HHHHHhhccccCCEEEEEEeec
Q 039679 142 LLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 142 LL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
.|++|.++|++||. .|+.=+.
T Consensus 164 aL~~A~~~Lk~gG~-~FvvKVF 184 (269)
T 2px2_A 164 ILEMVSDWLSRGPK-EFCIKIL 184 (269)
T ss_dssp HHHHHHHHHTTCCS-EEEEEES
T ss_pred HHHHHHHHhhcCCc-EEEEEEC
Confidence 68999999999993 3333343
No 268
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.62 E-value=1.1e+02 Score=20.68 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=35.6
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 15 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 15 NLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 344567778899999888853333332222223356899999999998876543
No 269
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=33.53 E-value=26 Score=27.58 Aligned_cols=22 Identities=5% Similarity=-0.254 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccccCCEEEEE
Q 039679 138 CVHDLLDLAGRILVMGGRLVYF 159 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~ 159 (230)
-+..+|+.+.++|++||.+++.
T Consensus 119 ~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 119 RLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp HHHHHHHHHHTTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEc
Confidence 3567899999999999966544
No 270
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=32.49 E-value=42 Score=28.89 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEee
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+....+|+.+.+.|+|||++++.-+.
T Consensus 272 ~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 272 QLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 45678899999999999999877644
No 271
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=31.77 E-value=40 Score=29.28 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+-...+|..+.+.|+|||+|++.=+..
T Consensus 264 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 264 EEVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 344578999999999999998865544
No 272
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=31.66 E-value=21 Score=31.03 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=39.0
Q ss_pred HHHHHHHhhccccCCEEEEE-EeeccCCCCC-----C---------------CccccCCceeEeeEEEecCCc--eeEEE
Q 039679 140 HDLLDLAGRILVMGGRLVYF-YPVLREDSTR-----N---------------PFPEHLCFKLVASSEQILSSR--YSRVL 196 (230)
Q Consensus 140 ~dLL~~Aa~~L~~gGRLvf~-lP~~~~~~~~-----~---------------~lp~h~gl~li~~~~Q~~~~k--~sR~L 196 (230)
...|....++|+|||+++++ -|-....... . ......||.+.....-+..+. -.=.|
T Consensus 165 ~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l 244 (291)
T 3hp7_A 165 NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFL 244 (291)
T ss_dssp GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEE
T ss_pred HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHH
Confidence 56788899999999999886 3322211100 0 112245999998888888665 22235
Q ss_pred EEEEEc
Q 039679 197 LTMVKI 202 (230)
Q Consensus 197 it~~K~ 202 (230)
+-++|.
T Consensus 245 ~~~~~~ 250 (291)
T 3hp7_A 245 AHLEKT 250 (291)
T ss_dssp EEEEEC
T ss_pred HHhhhc
Confidence 555663
No 273
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=31.62 E-value=36 Score=28.94 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
-...+|..+.+.|+|||+|++.-+..
T Consensus 252 ~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 252 SAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 35678999999999999998875543
No 274
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.48 E-value=84 Score=20.07 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=33.8
Q ss_pred ccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 11 LLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 11 h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 9 p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 60 (77)
T 1uaw_A 9 SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60 (77)
T ss_dssp CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHH
Confidence 3455667888888878753334332222223357899999999998877654
No 275
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.47 E-value=78 Score=21.21 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=34.2
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 24 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 24 LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 34566677888887777753333332222223356899999999998887654
No 276
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.32 E-value=99 Score=21.19 Aligned_cols=55 Identities=15% Similarity=-0.023 Sum_probs=36.0
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 21 GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHH
Confidence 3345567788899999888863334332221223356799999999998877553
No 277
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.61 E-value=1e+02 Score=20.93 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=34.6
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
.-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.+
T Consensus 17 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 17 GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp SCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH
Confidence 33456677788888887775333333222222335789999999999887765
No 278
>1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, pseudomon aeruginosa, MCSG, PSI; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9
Probab=30.37 E-value=21 Score=26.97 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.0
Q ss_pred CCEEEEecCCHHHHHHHHHHHHH
Q 039679 44 SPFHFVNLPSEDIARSIANRIWI 66 (230)
Q Consensus 44 ~pf~vV~lp~e~~a~~l~~Rsil 66 (230)
.+|++|+.+|.+.|..+++|.-.
T Consensus 85 gG~~iie~~s~deA~e~A~~~P~ 107 (124)
T 1s7i_A 85 GGFYLIEARDLNQALQIAAKIPP 107 (124)
T ss_dssp EEEEEEEESSHHHHHHHHTTCGG
T ss_pred eeEEEEEeCCHHHHHHHHHhCCc
Confidence 37999999999999999988643
No 279
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=29.46 E-value=40 Score=28.02 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeeccCCCCCCCccccCCceeEeeEEEecCCceeEEEEEE
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTM 199 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~~~~~~~~~lp~h~gl~li~~~~Q~~~~k~sR~Lit~ 199 (230)
+++.++|+.+...|+++|+|++ =|.. +.+.-...-...||.++....=.=.+++...|.+-
T Consensus 96 ~~i~~Il~~~~~~L~~~~~lVl-q~~~-~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 96 RLIARILEEGLGKLANVERLIL-QPNN-REDDLRIWLQDHGFQIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp HHHHHHHHHTGGGCTTCCEEEE-EESS-CHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEE-ECCC-CHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 4678899999999999999876 5653 22211122234499999876333335677766543
No 280
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=29.38 E-value=89 Score=20.40 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=35.6
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 14 nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 14 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 334566678899888888853334332111223357899999999998887654
No 281
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.22 E-value=1.1e+02 Score=21.51 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=34.5
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.+
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 25 LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 3456677888888888885333433322222345679999999999887654
No 282
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.08 E-value=1.4e+02 Score=20.52 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=35.7
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 21 RNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHH
Confidence 3344567778899888888852233322111222357899999999998876554
No 283
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.73 E-value=1.5e+02 Score=20.60 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=34.2
Q ss_pred hccCCCHHHHHHHHHHcCCCc--------cccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVND--------ALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~--------~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+....+|..+..-+|.-. .+.+..........+|..|++.+.++|.+.++
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 23 LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 345667788888888887532 23322211223346799999999998877554
No 284
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.44 E-value=75 Score=21.28 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=35.2
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 22 nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 75 (95)
T 2cqc_A 22 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 75 (95)
T ss_dssp SCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHH
Confidence 344566778899999888853333332111112345799999999998887655
No 285
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=28.38 E-value=37 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccccCCEE------EEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRL------VYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRL------vf~lP~~ 163 (230)
++..++....++|+|||++ +|+.|..
T Consensus 167 ~l~~~l~a~~r~Lkp~G~~iP~~atly~apie 198 (376)
T 4hc4_A 167 MLSSVLHARTKWLKEGGLLLPASAELFIVPIS 198 (376)
T ss_dssp SHHHHHHHHHHHEEEEEEEESCEEEEEEEEEC
T ss_pred hhhhHHHHHHhhCCCCceECCccceEEEEEec
Confidence 4677888889999999997 4666765
No 286
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.33 E-value=71 Score=21.02 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=33.9
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 12 nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 12 GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp SCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 334556667777777777642233322222223357899999999998887654
No 287
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=28.16 E-value=41 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhccccCCEEEEEEe
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
-...+|..+.+.|+|||+|++.=+
T Consensus 278 ~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 278 HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 345789999999999999988643
No 288
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=28.02 E-value=60 Score=28.21 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=20.9
Q ss_pred HHHHHHHHhhccccCCEEEEEEeec
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
...+|+.+.+.|+|||+|++.-+..
T Consensus 286 ~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 286 VVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 4578999999999999998876554
No 289
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.90 E-value=80 Score=21.67 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=35.5
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 19 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 19 DNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 3445567778888888888853333332222223356899999999988876543
No 290
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.84 E-value=1.5e+02 Score=20.28 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=35.9
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCC-CCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLP-KHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~-~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+..-.+|..+..-+|--.++.+... .......+|..|++.+.++|.+.++
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 76 (107)
T 2cph_A 21 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 76 (107)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHH
T ss_pred eCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHH
Confidence 334456777889999988885323332211 1123357899999999998877554
No 291
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=27.64 E-value=89 Score=20.50 Aligned_cols=55 Identities=9% Similarity=-0.048 Sum_probs=36.1
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 12 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 66 (87)
T 3bs9_A 12 GDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 66 (87)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 3344567778899998888863333332111222346799999999998887655
No 292
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=27.63 E-value=43 Score=28.60 Aligned_cols=26 Identities=15% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhccccCCEEEEEEeec
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
-...+|..+.+.|+|||++++.-+..
T Consensus 265 ~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (352)
T 3mcz_A 265 EAREVIGHAAGLVKPGGALLILTMTM 290 (352)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 45789999999999999998875543
No 293
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=27.49 E-value=40 Score=26.40 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=17.6
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
+..+|+.+.++|+|||.+ +..|.
T Consensus 120 ~~~~l~~~~~~LkpgG~~-i~~~~ 142 (219)
T 3jwg_A 120 LQAFEKVLFEFTRPQTVI-VSTPN 142 (219)
T ss_dssp HHHHHHHHHTTTCCSEEE-EEEEB
T ss_pred HHHHHHHHHHhhCCCEEE-EEccc
Confidence 567899999999999955 44444
No 294
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=27.39 E-value=98 Score=21.73 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=35.2
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 32 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 32 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp SCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHH
Confidence 344566778899998888853344332222122245699999999998887654
No 295
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=27.39 E-value=57 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
-...+|..+.+.|+|||+|++.-+.
T Consensus 250 ~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 250 ASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4468899999999999999888544
No 296
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.84 E-value=1.1e+02 Score=20.74 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=35.0
Q ss_pred hhccCCCHHHHHHHHHHcCCCc-cccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVND-ALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~-~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
.-..+..-.+|..+..-+|--. ++.+..........+|..|++.+.++|.+.+
T Consensus 16 nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 16 DLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp SCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHH
Confidence 3445677889999999998533 4433222222234579999999999887654
No 297
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=26.69 E-value=1.3e+02 Score=21.29 Aligned_cols=57 Identities=7% Similarity=0.041 Sum_probs=36.9
Q ss_pred ehhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 6 VFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 6 ~fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
+...-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 26 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 334445566778899998888853334332222223347899999999998876554
No 298
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=26.65 E-value=45 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhccccCCEEEEEEee
Q 039679 138 CVHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 138 ~~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
-...+|..+.+.|+|||+|++.=..
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3457899999999999999886433
No 299
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=25.89 E-value=43 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhccccCCEEEEEEeec
Q 039679 137 ECVHDLLDLAGRILVMGGRLVYFYPVL 163 (230)
Q Consensus 137 ~~~~dLL~~Aa~~L~~gGRLvf~lP~~ 163 (230)
+-...+|+.+.++|+|||++++.-+..
T Consensus 248 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 248 ATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 345688999999999999999886654
No 300
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=25.77 E-value=1.7e+02 Score=20.77 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=35.2
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+.--.+|..+..-+|--.++.+.... .....+|..|++.+.++|.+.++
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 15 LNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHH
Confidence 34456778899999888863344433222 23356899999999998876543
No 301
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=25.64 E-value=1.4e+02 Score=21.79 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=34.9
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 54 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 54 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 34456677888888888853344332222223457899999999998887654
No 302
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=25.52 E-value=1.7e+02 Score=20.18 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=35.8
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 32 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 32 TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3344566678899988888853333332221223346899999999998877654
No 303
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=24.61 E-value=1.7e+02 Score=19.94 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=35.9
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 20 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 20 QIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp SCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 344566778999999999853344332222223357899999999998876544
No 304
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=23.90 E-value=2e+02 Score=20.53 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=35.6
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+..-.+|..+..-+|--.++.+..........+|-.|++.+.++|.+.++
T Consensus 71 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 71 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34556778899888888863344332222223467899999999998877654
No 305
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=23.51 E-value=1.8e+02 Score=19.69 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=35.0
Q ss_pred hccCCCHHHHHHHHHHcCC-CccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGV-NDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi-~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
=..+.--.+|..+..-+|. -.++.+..........+|..|++.+.++|.+.++
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 3445666789999999984 2233332222234467899999999998876543
No 306
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=23.26 E-value=1.2e+02 Score=19.63 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=33.5
Q ss_pred hccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 10 RLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 10 ~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 34455667788888777753333322121223346899999999998887654
No 307
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=22.92 E-value=1.1e+02 Score=20.97 Aligned_cols=56 Identities=7% Similarity=0.041 Sum_probs=36.2
Q ss_pred hhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 7 FFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 7 fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
...-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 28 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 28 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 33444566778899999888863333322111222346899999999998876554
No 308
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=22.17 E-value=42 Score=29.21 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=16.1
Q ss_pred HHHHHHhhccccC-CEEEE
Q 039679 141 DLLDLAGRILVMG-GRLVY 158 (230)
Q Consensus 141 dLL~~Aa~~L~~g-GRLvf 158 (230)
+||++|.++|++| |.+|+
T Consensus 164 ~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 164 RVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp HHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHhCCCCCeEEE
Confidence 5699999999999 98876
No 309
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=21.70 E-value=1.4e+02 Score=22.08 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=30.2
Q ss_pred cCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 12 LDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 12 ~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
.+++..+|+.|-.-+| .+.++|+ ++--..|-+-+.+.|+.++
T Consensus 25 ~ewKt~DI~~lFs~fg-gv~I~Wi-------dDTsAlvvf~~~~~a~~al 66 (100)
T 1whv_A 25 KEWKTSDLYQLFSAFG-NIQISWI-------DDTSAFVSLSQPEQVQIAV 66 (100)
T ss_dssp TTCCHHHHHHHHTTTC-SCCCEEE-------ETTEEEEECSCHHHHHHHH
T ss_pred hhhhhHHHHHHhhccC-CEEEEEE-------cCCeEEEEecCHHHHHHHH
Confidence 5788999999999998 6799997 2233445565777775443
No 310
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.47 E-value=1.7e+02 Score=20.47 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=33.2
Q ss_pred ccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 11 LLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 11 h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.+
T Consensus 36 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 36 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHH
Confidence 445667788888888875334433322222335689999999999887654
No 311
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=21.46 E-value=1.2e+02 Score=22.33 Aligned_cols=53 Identities=9% Similarity=0.052 Sum_probs=35.3
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIA 61 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~ 61 (230)
.-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.+
T Consensus 54 nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 54 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp CCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 34456677889999988885334443322222345779999999999887653
No 312
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=21.18 E-value=89 Score=22.02 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=35.4
Q ss_pred hhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 8 FHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 8 s~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 46 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 46 YHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp ECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3345566778888888877742233332222223457899999999998877654
No 313
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=21.06 E-value=49 Score=28.46 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.5
Q ss_pred HHHHHHHHhhccccCCEEEEEEe
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYP 161 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP 161 (230)
...+|..+.++|+|||++++.-+
T Consensus 266 ~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 266 ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEEec
Confidence 35789999999999999988655
No 314
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=20.92 E-value=57 Score=28.32 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...+|..+.+.|+|||++++.=+.
T Consensus 285 ~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 285 CIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEec
Confidence 347899999999999999887433
No 315
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=20.90 E-value=1e+02 Score=22.96 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=35.5
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+.--.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 46 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 46 NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 344566778899999888863334332111122245799999999998887654
No 316
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=20.87 E-value=1.1e+02 Score=21.32 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=36.1
Q ss_pred ehhhhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 6 VFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 6 ~fs~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
+...-..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 333445567778899999888863333332111122245799999999998876543
No 317
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.81 E-value=48 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.3
Q ss_pred ehhhhccCCCHHHHHHHHHHcCCCc
Q 039679 6 VFFHRLLDYRKPEVESLAYLFGVND 30 (230)
Q Consensus 6 ~fs~~h~~fr~~El~sl~~l~gi~~ 30 (230)
.+.+=-..||.+||+-|+.-+|.+-
T Consensus 6 el~~Mv~sfRVsELq~LLg~~gr~K 30 (65)
T 1v66_A 6 ELKQMVMSLRVSELQVLLGYAGRNK 30 (65)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCCC
Confidence 4455567899999999999999953
No 318
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=20.66 E-value=1.4e+02 Score=20.23 Aligned_cols=57 Identities=7% Similarity=-0.059 Sum_probs=35.8
Q ss_pred ehhhhccCCCHHHHHHHHHHcCCCcc--------ccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 6 VFFHRLLDYRKPEVESLAYLFGVNDA--------LEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 6 ~fs~~h~~fr~~El~sl~~l~gi~~~--------~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
+...-..+..-.||..+..-+|.-.+ +.+..........+|..|++.+.++|.+.++
T Consensus 17 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 17 FVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp EEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 33444556777888888888885322 3322111222346799999999998876654
No 319
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=20.50 E-value=59 Score=27.82 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.2
Q ss_pred HHHHHHHHhhccccCCEEEEEEee
Q 039679 139 VHDLLDLAGRILVMGGRLVYFYPV 162 (230)
Q Consensus 139 ~~dLL~~Aa~~L~~gGRLvf~lP~ 162 (230)
...+|..+.++|+|||++++.-+.
T Consensus 267 ~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 267 AVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEe
Confidence 357899999999999999987554
No 320
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=20.47 E-value=1.9e+02 Score=20.22 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=34.2
Q ss_pred ccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 11 LLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 11 h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
..+..-.+|..+..-+|--.++.+..........+|..|++.+.++|.+.++
T Consensus 34 p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 34 SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4556677888888888763333332222223357899999999998887654
No 321
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.29 E-value=99 Score=20.90 Aligned_cols=54 Identities=13% Similarity=-0.011 Sum_probs=33.4
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|.-.++.+..........+|..|++.+.++|.+.++
T Consensus 22 nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 75 (98)
T 2cqp_A 22 NMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 75 (98)
T ss_dssp SCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 334566677888887777753222222111222246899999999998887654
No 322
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=20.02 E-value=1.4e+02 Score=19.98 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=33.1
Q ss_pred hhccCCCHHHHHHHHHHcC--CCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFG--VNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~g--i~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+| --.++.+..........+|..|++.+.++|.+.++
T Consensus 8 nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 8 NLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp SCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 3345566788999999998 21233322111222346799999999998876543
No 323
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=20.02 E-value=1.2e+02 Score=20.27 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=34.9
Q ss_pred hhccCCCHHHHHHHHHHcCCCccccccCCCCCCCCCCEEEEecCCHHHHHHHHH
Q 039679 9 HRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62 (230)
Q Consensus 9 ~~h~~fr~~El~sl~~l~gi~~~~~~~~~~~~~~~~pf~vV~lp~e~~a~~l~~ 62 (230)
.-..+..-.+|..+..-+|--.++.+..... ....+|..|++.+.++|.+.++
T Consensus 23 nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 23 NLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp CCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHH
Confidence 3445667788999988888533333221111 2346799999999998887654
Done!