BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039682
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 72/100 (72%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK P+S+ +PK +PDP+ +LWLKV+ E+RQ+G T MIF IPY+IS++S I+T
Sbjct: 123 AKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIIT 182
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRFDNKK 100
L EGD+ILTG+P+GVGPVK + AGI GL+ + F +K
Sbjct: 183 LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEK 222
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 2 KGQDTFTP-ISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
K +D TP +S+++PK A+PDP+N L V+ E+RQQG+T D+IF +P+LI+++S MT
Sbjct: 325 KSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT 384
Query: 61 LFEGDVILTGSPQGV 75
L GD+I TG+P+G+
Sbjct: 385 LNPGDMIATGTPKGL 399
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK +D F PI + S V N ++ +++ +T D+ L+S +S T
Sbjct: 109 AKCRDGFCPIGETVALSNVD---NLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFAT 165
Query: 61 LFEGDVILTGSPQGVGPVKAGQK 83
L GD IL G+PQ ++ G +
Sbjct: 166 LNPGDAILLGTPQARVEIQPGDR 188
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 AKGQDTFTPISSVLPKSAVP-DPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM 59
AK D P+S +P + DP N L L V+ E RQQG+T D I KI LI++ S
Sbjct: 123 AKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADXIHKIVPLIAYXSKFF 182
Query: 60 TLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90
TL GDV+LTG+P GVGP+++G + T G
Sbjct: 183 TLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 213
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK D PIS +P + D +L L ++ EIRQQG+T+D I I LIS+ S T
Sbjct: 124 AKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDXITPIIPLISYXSRFFT 183
Query: 61 LFEGDVILTGSPQGVGPVKAG 81
L GD++LTG+PQGVGP ++G
Sbjct: 184 LRAGDIVLTGTPQGVGPXQSG 204
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLK--VDREIRQQGSTKDMIFKIPYLISHISSI 58
AKG+DTF P+ L V DP + LWL+ V+ E+RQ+G T M++ + L+ IS
Sbjct: 145 AKGRDTFLPLGPFLVVEEVEDPQD--LWLRAYVNGELRQEGHTSRMLYSVAELLEFISEF 202
Query: 59 MTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
MTL DV+LTG+P+G+ V+ G I GL
Sbjct: 203 MTLEPYDVLLTGTPKGISQVRPGDVMRLEIEGL 235
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AKG DTF P+ + DP + EL +V+ ++Q T MI + ++ IS++MT
Sbjct: 168 AKGHDTFCPVGPWIVTDV--DPADLELRTEVNGAVKQHARTSLMIHDVGAIVEWISAVMT 225
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L GD+ILTG+P GVGP++ G + I G+
Sbjct: 226 LLPGDLILTGTPAGVGPIEDGDTVSITIEGI 256
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AKG DTF P+ + DP + E+ +V+ ++RQ+ T ++ + ++ +S++MT
Sbjct: 165 AKGHDTFCPLGPWIVTDL--DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMT 222
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L GDVILTG+P+GVGP+ G + I G+
Sbjct: 223 LLPGDVILTGTPEGVGPIVDGDTVSVTIEGI 253
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLK--VDREIRQQGSTKDMIFKIPYLISHISSI 58
AK D F P+ L P + W++ V+ +RQ+G T MIF + ++S+IS+
Sbjct: 161 AKSADKFLPLGPWLETDLNPQ----DTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTF 216
Query: 59 MTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
MTL DV+LTG+P+GVG ++ G + + G+
Sbjct: 217 MTLEPLDVVLTGTPEGVGALRPGDRLEVAVEGV 249
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 1 AKGQDTFTPISSVLP-------KSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLIS 53
+KG DTF PIS+++ KS + D F + V+ ++RQ G T + + ++
Sbjct: 141 SKGFDTFXPISAIVSREKFSSYKSNLQDI--FRVKCSVNGQLRQDGGTNLXLHPLHKILQ 198
Query: 54 HISSIMTLFEGDVILTGSPQGVGPVKAGQK 83
HIS+ ++L GD+ILTG+P GVG +K G +
Sbjct: 199 HISTXISLEPGDIILTGTPAGVGELKPGDR 228
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 27 LWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKAGQKTTA 86
L L+ + + +QQGS+ + +F I LI+H S +L GDVILTG+P GVGP++ G +A
Sbjct: 148 LTLEKNGQFQQQGSSAEXLFPILPLIAHXSEHFSLQPGDVILTGTPAGVGPLEVGDSLSA 207
Query: 87 GIA 89
++
Sbjct: 208 KLS 210
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 2 KGQDTFTPISSVLPKSAVPDPYN-FELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
KG TF P L + + F+ L+++ E+RQ GST DM ++ +S+ +
Sbjct: 214 KGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVSATIA 273
Query: 61 LFEGDVILTGSPQGVG 76
L GD+ILTG+P G G
Sbjct: 274 LRAGDIILTGTPGGCG 289
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 AKGQDTFTPISSVLP---KSAVPDPYNFELWLKVDRE--IRQQGSTKDMIFKIPYLISHI 55
AKG DTF PI + S D + L D E ++Q ++ MI K+ +I I
Sbjct: 183 AKGIDTFGPIGPWIETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFI 242
Query: 56 SSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
++ MTL GDVI TGSP G + G I G+
Sbjct: 243 TASMTLLPGDVIATGSPAGTEAMVDGDYIEIEIPGI 278
>pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|B Chain B, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|C Chain C, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|D Chain D, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
Length = 250
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 63 EGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVR 95
+G I+TG+ QG+G V A T G +L+ R
Sbjct: 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIAR 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,257,803
Number of Sequences: 62578
Number of extensions: 118892
Number of successful extensions: 230
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 15
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)