Query 039682
Match_columns 107
No_of_seqs 102 out of 1139
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r6o_A 2-hydroxyhepta-2,4-dien 100.0 8.5E-33 2.9E-37 207.4 12.9 103 1-103 213-323 (329)
2 1saw_A Hypothetical protein FL 100.0 1.1E-32 3.8E-37 197.5 12.5 102 1-102 123-224 (225)
3 3s52_A Putative fumarylacetoac 100.0 2.3E-33 7.7E-38 200.8 8.1 97 1-98 124-220 (221)
4 3rr6_A Putative uncharacterize 100.0 1.5E-32 5.1E-37 201.1 10.4 99 1-101 165-263 (265)
5 3l53_A Putative fumarylacetoac 100.0 2.8E-32 9.4E-37 195.6 11.4 99 1-99 120-222 (224)
6 4dbf_A 2-hydroxyhepta-2,4-dien 100.0 1.9E-32 6.5E-37 202.5 9.9 100 1-100 183-287 (288)
7 1wzo_A HPCE; structural genomi 100.0 6.2E-32 2.1E-36 195.8 11.6 100 1-100 145-244 (246)
8 2dfu_A Probable 2-hydroxyhepta 100.0 2.2E-31 7.4E-36 194.8 12.0 101 1-103 161-261 (264)
9 2q18_X 2-keto-3-deoxy-D-arabin 100.0 3.4E-30 1.2E-34 190.7 11.1 102 1-102 181-290 (293)
10 1gtt_A 4-hydroxyphenylacetate 100.0 3.1E-30 1.1E-34 199.2 10.6 102 1-102 324-426 (429)
11 1nkq_A Hypothetical 28.8 kDa p 100.0 1.1E-29 3.9E-34 185.3 9.3 99 1-99 141-244 (259)
12 1gtt_A 4-hydroxyphenylacetate 100.0 5.7E-29 1.9E-33 192.1 11.7 98 1-101 109-206 (429)
13 2wqt_A 2-keto-4-pentenoate hyd 100.0 2.2E-28 7.7E-33 179.2 9.6 101 1-102 150-264 (270)
14 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 99.9 7.6E-28 2.6E-32 176.0 8.6 97 2-99 165-267 (267)
15 3lzk_A Fumarylacetoacetate hyd 99.9 2E-26 6.9E-31 174.6 8.2 97 7-103 214-358 (359)
16 1hyo_A Fumarylacetoacetate hyd 99.9 4.3E-23 1.5E-27 159.1 7.6 100 1-102 254-418 (421)
17 2kl0_A Putative thiamin biosyn 84.2 0.34 1.2E-05 28.1 1.1 54 27-86 1-58 (73)
18 1tyg_B YJBS; alpha beta barrel 82.9 1.7 5.8E-05 26.1 3.8 59 24-86 18-80 (87)
19 2k5p_A THis protein, thiamine- 77.9 1.2 4.1E-05 26.1 1.9 58 27-86 1-62 (78)
20 2cu3_A Unknown function protei 77.3 4.1 0.00014 22.4 4.0 52 29-86 2-57 (64)
21 1f0z_A THis protein; ubiquitin 69.7 1.1 3.7E-05 25.0 0.3 26 27-56 1-26 (66)
22 2k6w_A Putative uncharacterize 54.0 38 0.0013 21.2 5.6 44 58-102 66-119 (120)
23 1ryj_A Unknown; beta/alpha pro 51.3 7.7 0.00026 21.7 1.7 53 26-86 4-63 (70)
24 2jv2_A Putative uncharacterize 45.6 32 0.0011 20.2 3.9 24 48-71 29-52 (83)
25 2if6_A Hypothetical protein YI 43.9 11 0.00039 24.9 1.9 14 60-73 4-17 (186)
26 1eik_A RNA polymerase subunit 39.8 11 0.00038 22.1 1.1 12 56-67 46-57 (77)
27 1hmj_A RPB5, protein (subunit 37.3 12 0.00041 22.0 1.0 13 56-68 44-56 (78)
28 1gxc_A CHK2, CDS1, serine/thre 36.3 15 0.0005 23.6 1.4 16 58-73 117-132 (149)
29 2f9h_A PTS system, IIA compone 36.0 42 0.0014 21.4 3.5 60 27-88 59-126 (129)
30 4ayb_H DNA-directed RNA polyme 33.7 11 0.00038 22.4 0.4 12 56-67 52-63 (84)
31 1jb3_A Agrin; neuromuscular ju 31.7 12 0.00041 24.2 0.4 21 61-81 10-30 (131)
32 1xkp_B Chaperone protein SYCN; 31.3 1E+02 0.0035 19.6 4.8 37 48-97 4-40 (124)
33 3mb8_A Purine nucleoside phosp 31.0 63 0.0022 22.9 4.2 55 27-86 55-113 (279)
34 3phc_A Purine nucleoside phosp 30.7 70 0.0024 22.6 4.4 54 28-86 52-109 (275)
35 4fln_A Protease DO-like 2, chl 29.9 46 0.0016 26.2 3.5 42 61-102 294-356 (539)
36 2h2b_A Tight junction protein 27.4 47 0.0016 19.3 2.6 11 59-69 54-64 (107)
37 3hx1_A SLR1951 protein; P74513 27.2 54 0.0019 20.4 3.0 15 59-73 94-108 (131)
38 2i6v_A General secretion pathw 27.0 26 0.00089 19.9 1.3 31 59-89 35-75 (87)
39 2hnf_A Repressor protein CI101 25.5 1.2E+02 0.0041 18.5 4.5 29 59-90 62-90 (133)
40 2l66_A SSO7C4, transcriptional 25.3 54 0.0019 17.1 2.3 15 78-92 26-40 (53)
41 1o91_A Collagen alpha 1(VIII) 24.6 54 0.0018 21.7 2.7 48 23-89 106-153 (178)
42 1umu_A UMUD'; induced mutagene 24.4 1.2E+02 0.004 18.0 5.0 28 60-90 41-68 (116)
43 2k52_A Uncharacterized protein 24.4 77 0.0026 17.7 3.1 26 76-101 44-73 (80)
44 2kjp_A Uncharacterized protein 24.3 56 0.0019 18.8 2.5 42 60-101 17-69 (91)
45 1gr3_A Collagen X; extracellul 24.0 57 0.0019 21.2 2.7 47 24-89 89-135 (160)
46 1u1z_A (3R)-hydroxymyristoyl-[ 24.0 1.1E+02 0.0037 19.6 4.1 24 77-100 120-149 (168)
47 3d6x_A (3R)-hydroxymyristoyl-[ 23.9 1.2E+02 0.0039 18.6 4.1 24 77-100 100-129 (146)
48 2eaq_A LIM domain only protein 23.8 31 0.0011 19.4 1.2 10 60-69 45-54 (90)
49 2i4s_A General secretion pathw 23.5 32 0.0011 20.2 1.3 30 60-89 54-93 (105)
50 1je0_A MTAP;, 5'-methylthioade 23.5 1E+02 0.0035 20.6 4.1 27 61-87 79-106 (236)
51 3qpb_A Uridine phosphorylase; 23.3 1E+02 0.0035 21.8 4.1 26 61-86 110-136 (282)
52 4h4g_A (3R)-hydroxymyristoyl-[ 23.2 1.2E+02 0.004 19.5 4.1 24 77-100 110-139 (160)
53 1z6b_A Pffabz, fatty acid synt 23.2 1.1E+02 0.0036 19.1 3.9 13 77-89 106-118 (154)
54 2yt7_A Amyloid beta A4 precurs 23.1 65 0.0022 18.6 2.7 11 59-69 54-64 (101)
55 2j58_A WZA, outer membrane lip 22.8 80 0.0027 23.2 3.6 39 26-72 192-232 (359)
56 4i83_A 3-hydroxyacyl-[acyl-car 22.6 1.4E+02 0.0048 18.7 4.4 25 76-100 105-135 (152)
57 2pa1_A PDZ and LIM domain prot 22.4 36 0.0012 19.0 1.3 11 59-69 42-52 (87)
58 2qcp_X Cation efflux system pr 22.3 50 0.0017 19.0 1.9 16 76-91 52-67 (80)
59 2pkt_A PDZ and LIM domain prot 22.1 35 0.0012 19.2 1.2 11 59-69 43-53 (91)
60 2l55_A SILB,silver efflux prot 22.0 51 0.0017 19.1 1.9 16 75-90 45-60 (82)
61 2kv8_A RGS12, regulator of G-p 22.0 61 0.0021 17.8 2.3 8 61-68 41-48 (83)
62 1mfg_A ERB-B2 interacting prot 21.9 90 0.0031 17.5 3.1 10 60-69 51-60 (95)
63 4egx_A Kinesin-like protein KI 21.7 55 0.0019 21.8 2.3 13 59-71 153-165 (184)
64 4ejq_A Kinesin-like protein KI 21.7 54 0.0018 21.1 2.2 11 60-70 124-134 (154)
65 2gll_A FABZ, (3R)-hydroxymyris 21.6 1.3E+02 0.0044 19.4 4.1 24 77-100 124-153 (171)
66 3esi_A Uncharacterized protein 21.6 96 0.0033 19.5 3.3 25 77-101 77-104 (129)
67 1m5z_A GRIP, AMPA receptor int 21.3 37 0.0013 19.1 1.2 10 60-69 49-58 (91)
68 2vb2_X Copper protein, cation 21.1 54 0.0018 19.2 1.9 16 76-91 60-75 (88)
69 3tee_A Flagella basal BODY P-r 21.1 33 0.0011 23.6 1.1 33 59-91 122-154 (219)
70 3eei_A 5-methylthioadenosine n 21.0 35 0.0012 22.9 1.2 27 61-87 69-96 (233)
71 2dls_A PDZ-rhogef, RHO guanine 20.7 85 0.0029 17.7 2.8 11 59-69 45-55 (93)
72 3i18_A LMO2051 protein; alpha- 20.7 56 0.0019 18.9 2.0 40 60-99 23-73 (100)
73 1yfb_A Transition state regula 20.7 63 0.0021 17.5 2.0 13 78-90 36-48 (59)
74 1kca_A Repressor protein CI; g 20.5 1.3E+02 0.0044 17.8 3.7 29 59-90 31-59 (109)
75 3lnn_A Membrane fusion protein 20.3 48 0.0017 23.6 1.9 25 59-86 332-356 (359)
76 1vb7_A PDZ and LIM domain 2; P 20.3 42 0.0014 19.1 1.3 10 60-69 47-56 (94)
77 2rcz_A Tight junction protein 20.3 43 0.0015 18.1 1.3 9 61-69 40-48 (81)
78 2kl1_A YLBL protein; structure 20.1 65 0.0022 18.5 2.2 42 60-101 21-73 (94)
79 2q9v_A Membrane-associated gua 20.1 43 0.0015 18.7 1.3 9 61-69 46-54 (90)
No 1
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=100.00 E-value=8.5e-33 Score=207.38 Aligned_cols=103 Identities=31% Similarity=0.487 Sum_probs=98.3
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCe---
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVG--- 76 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~--- 76 (107)
+|+||++|++|||+ +++++.|+.++.+++++||+++|++++++|+|++.++|+|+|++++|+|||||+||||.|++
T Consensus 213 aK~fd~~~plGP~ivt~del~d~~~l~l~l~vNGe~~q~g~t~dMif~~~~lIa~lS~~~tL~pGDvI~TGTp~GvG~~~ 292 (329)
T 3r6o_A 213 GKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVSATIALRAGDIILTGTPGGCGFQF 292 (329)
T ss_dssp HHCSTTSEEBCSCEEECTTCSSCCCCEEEEEETTEEEEEEEGGGCSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCGGGS
T ss_pred ccCcCcCcccCCeEcChhhcCChhhcEEEEEECCEEEEecCHHHhcCCHHHHHHHHHcCCCcCCCCEEEcCCccccCCCC
Confidence 59999999999997 78888899999999999999999999999999999999999999999999999999999998
Q ss_pred ----eCCCCCEEEEEECceeEEEEEEEeccC
Q 039682 77 ----PVKAGQKTTAGIAGLLVVRFDNKKRRR 103 (107)
Q Consensus 77 ----~l~~Gd~v~~~i~g~G~l~~~v~~~~~ 103 (107)
++++||+|+++|+|+|+++|+|.....
T Consensus 293 ~p~~~l~~GD~V~~ei~glG~l~n~V~~~~~ 323 (329)
T 3r6o_A 293 DPPRYLRPGDVIEAHSAKLGKMRLPVHDEKP 323 (329)
T ss_dssp SSCCCCCTTCEEEEEETTTEEEEEEEEECCC
T ss_pred CCCccCCCCCEEEEEEcCceEEEEEEEeCCC
Confidence 899999999999999999999987643
No 2
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=100.00 E-value=1.1e-32 Score=197.50 Aligned_cols=102 Identities=51% Similarity=0.901 Sum_probs=97.8
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
||+||++||+|||++.+++.|+.++++++++||+++|++++++|+|+|.++|+|+|++++|+|||+|+||||.|++++++
T Consensus 123 aK~~d~~~plGp~v~~~~~~d~~~l~l~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~tL~~GDvI~TGTp~Gvg~l~~ 202 (225)
T 1saw_A 123 AKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKE 202 (225)
T ss_dssp HHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECT
T ss_pred eecCCCCEecCCcccHHHcCCCceeEEEEEECCEEEEEEcHHHcCCCHHHHHHHHhCCCCcCCCCEEEcCCCCCceeCCC
Confidence 59999999999999878777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEecc
Q 039682 81 GQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
||+++++|+|+|+++|+|.+.|
T Consensus 203 Gd~v~~~i~glG~l~~~v~~~~ 224 (225)
T 1saw_A 203 NDEIEAGIHGLVSMTFKVEKPE 224 (225)
T ss_dssp TCEEEEEETTTEEEEEEEECCC
T ss_pred CCEEEEEECCcEEEEEEEEEee
Confidence 9999999999999999998643
No 3
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=100.00 E-value=2.3e-33 Score=200.79 Aligned_cols=97 Identities=42% Similarity=0.594 Sum_probs=93.3
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||++|++|||++.+++.|+.++++++++||+++|++++++|+|+|.++|+|+|++++|+|||||+||||.|++++++
T Consensus 124 aK~~d~~~plGp~i~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~l~~ 203 (221)
T 3s52_A 124 AKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQS 203 (221)
T ss_dssp HHSSTTCEEECCBEEHHHHCCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCBCTTCEEECCCCSCCEEECT
T ss_pred eecCCCCccccCceehhhcCCccceEEEEEECCEEEEEEcHHHccCCHHHHHHHHhCCCCcCCCCEEEeCCCCcceecCC
Confidence 59999999999999767677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEE
Q 039682 81 GQKTTAGIAGLLVVRFDN 98 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v 98 (107)
||+|+++|+|+| ++++|
T Consensus 204 GD~v~~~i~glG-l~~~v 220 (221)
T 3s52_A 204 GDMLKIMLNGKT-VNTRI 220 (221)
T ss_dssp TCEEEEEETTEE-EEEEB
T ss_pred CCEEEEEEeCeE-EEEEE
Confidence 999999999999 99886
No 4
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=99.98 E-value=1.5e-32 Score=201.11 Aligned_cols=99 Identities=33% Similarity=0.647 Sum_probs=94.3
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||++|++|||+..+ + |+.++++++++||+++|++++++|+|++.++|+|+|++++|+|||||+||||.|++++++
T Consensus 165 aK~fd~~~plGP~ivt~-~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lIa~lS~~~tL~pGDvI~TGTp~Gvg~l~~ 242 (265)
T 3rr6_A 165 AKGHDTFCPLGPWIVTD-L-DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVD 242 (265)
T ss_dssp HHHSTTCEEEEEEEESS-C-CGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCBCTTCEEECCCCSCCEECCT
T ss_pred ecccCCCcccCCcCcCC-C-CcccCEEEEEECCEEEEEECHHhhcCCHHHHHHHHhcCCCcCCCCEEEeCCCCCceeCCC
Confidence 59999999999998644 4 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEec
Q 039682 81 GQKTTAGIAGLLVVRFDNKKR 101 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~ 101 (107)
||+|+++|+|+|+++|+|..+
T Consensus 243 GD~v~v~i~giG~l~n~v~~~ 263 (265)
T 3rr6_A 243 GDTVSVTIEGIGTLSNPVVRK 263 (265)
T ss_dssp TCEEEEEETTTEEEEEEEECC
T ss_pred CCEEEEEECCcEEEEEEEEeC
Confidence 999999999999999999764
No 5
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=99.98 E-value=2.8e-32 Score=195.56 Aligned_cols=99 Identities=33% Similarity=0.537 Sum_probs=93.1
Q ss_pred CCcCCCCcccCccccCC--CCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeC
Q 039682 1 AKGQDTFTPISSVLPKS--AVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPV 78 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~--~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l 78 (107)
+|+||++|++|||++.+ ++.|+.++++++++||+++|++++++|+|++.++|+|+|++++|+|||||+||||.|++++
T Consensus 120 aK~fd~~~plGp~v~~~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~l 199 (224)
T 3l53_A 120 AKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPL 199 (224)
T ss_dssp HHSSTTSEEECCBBCCCCSSGGGGGGEEEEEEETTEEEEEEEGGGCSSCHHHHHHHHHHHSCBCTTCEEECCCCSCCEEC
T ss_pred eeccCCCcccCCcEeCchhhcCChhccEEEEEECCEEEEEEcHHHhcCCHHHHHHHHHCCCCcCCCCEEEcCCCCCCEEc
Confidence 59999999999998877 7778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEC--ceeEEEEEEE
Q 039682 79 KAGQKTTAGIA--GLLVVRFDNK 99 (107)
Q Consensus 79 ~~Gd~v~~~i~--g~G~l~~~v~ 99 (107)
++||+|+++|+ |+|.++++.+
T Consensus 200 ~~GD~v~~~i~~lG~~~~~~~~~ 222 (224)
T 3l53_A 200 EVGDSLSAKLSLEDNVLLTCDGV 222 (224)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEEEECCCcccEEEEEE
Confidence 99999999999 7777776654
No 6
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=99.98 E-value=1.9e-32 Score=202.47 Aligned_cols=100 Identities=31% Similarity=0.458 Sum_probs=94.2
Q ss_pred CCcCCCCcccCccccCC-CCCCCcceEEEEEECC----EEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCC
Q 039682 1 AKGQDTFTPISSVLPKS-AVPDPYNFELWLKVDR----EIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGV 75 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~-~~~~~~~~~~~l~vnG----~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~ 75 (107)
+|+||++||+|||+..+ +..|+.++++++++|| +++|++++++|+|++.++|+|+|++++|+|||||+||||.|+
T Consensus 183 aK~fd~~~plGP~ivt~~~~~d~~~l~i~~~vNG~~~~e~~Q~~~t~~mi~~~~~lIa~lS~~~tL~pGDvI~TGTP~Gv 262 (288)
T 4dbf_A 183 AKGIDTFGPIGPWIETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFITASMTLLPGDVIATGSPAGT 262 (288)
T ss_dssp HHHSTTCEEEEEEEECCGGGSCTTSCEEEEEEEETTEEEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCC
T ss_pred cccCCCCceeCCccccccccCCccccEEEEEEcCCcceEEEEecCHHHhcCCHHHHHHHHhCCCCcCCCCEEEcCCCCCC
Confidence 59999999999998533 3348899999999999 999999999999999999999999999999999999999999
Q ss_pred eeCCCCCEEEEEECceeEEEEEEEe
Q 039682 76 GPVKAGQKTTAGIAGLLVVRFDNKK 100 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~g~G~l~~~v~~ 100 (107)
+++++||+|+++|+|+|+++|+|.+
T Consensus 263 g~l~~GD~v~v~iegiG~L~n~v~~ 287 (288)
T 4dbf_A 263 EAMVDGDYIEIEIPGIGKLGNPVVD 287 (288)
T ss_dssp CBCCTTCEEEEEETTTEEEEEEEEE
T ss_pred eecCCCCEEEEEECCcEEEEEEEEe
Confidence 9999999999999999999999975
No 7
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=99.97 E-value=6.2e-32 Score=195.76 Aligned_cols=100 Identities=37% Similarity=0.573 Sum_probs=96.1
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||++|++|||+..+++.|+.++++++++||+++|++++++|+|+|.++|+|+|++++|+|||+|+||||.|++++++
T Consensus 145 ~K~~d~~~~lGp~i~~~~i~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL~pGDvI~TGTp~gvg~l~~ 224 (246)
T 1wzo_A 145 AKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGISQVRP 224 (246)
T ss_dssp HHCSTTCEEEEEEEECSCCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCCCSCEECT
T ss_pred eccCCCCEEECCcCcHHHcCCCcccEEEEEECCEEEEeeCHHHhCCCHHHHHHHHhCCCCcCCCCEEEeCCCCCceECCC
Confidence 49999999999997777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEe
Q 039682 81 GQKTTAGIAGLLVVRFDNKK 100 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~ 100 (107)
||+|+++|+|+|+++|+|..
T Consensus 225 GD~v~~~i~glG~l~~~v~~ 244 (246)
T 1wzo_A 225 GDVMRLEIEGLGALENPIEE 244 (246)
T ss_dssp TCEEEEEETTSCEEEEEEEE
T ss_pred CCEEEEEEcCcEEEEEEEEe
Confidence 99999999999999999975
No 8
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=99.97 E-value=2.2e-31 Score=194.85 Aligned_cols=101 Identities=32% Similarity=0.509 Sum_probs=95.6
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||++|++|||+.. ++ |+.++.+++++||+.+|++++++|+|++.++|+|+|++++|+|||+|+||||.|++++++
T Consensus 161 aK~~d~~~plGp~i~~-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL~pGDvI~TGTp~Gvg~l~~ 238 (264)
T 2dfu_A 161 AKSADKFLPLGPWLET-DL-NPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRP 238 (264)
T ss_dssp HHCSTTCEEEEEEEES-SC-CTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCCT
T ss_pred eecCCCCEEECCcCcc-cc-CCCccEEEEEECCEEEEEecHHHhhcCHHHHHHHHhcCCCcCCCCEEEeCCCCCccccCC
Confidence 5999999999999865 45 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEeccC
Q 039682 81 GQKTTAGIAGLLVVRFDNKKRRR 103 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~~~ 103 (107)
||+|+++|+|+|+++|+|..+++
T Consensus 239 GD~v~~~i~glG~l~~~v~~~~~ 261 (264)
T 2dfu_A 239 GDRLEVAVEGVGTLFTLIGPKEE 261 (264)
T ss_dssp TCEEEEEETTTEEEEEEEEEECC
T ss_pred CCEEEEEEeCcEEEEEEEEecCc
Confidence 99999999999999999987543
No 9
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=99.97 E-value=3.4e-30 Score=190.71 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=95.1
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEE--CCEEEEee--ccchhccCHHHHHHHHHcCCccCCCCEEecCC---C
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKV--DREIRQQG--STKDMIFKIPYLISHISSIMTLFEGDVILTGS---P 72 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~v--nG~~~~~~--~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt---~ 72 (107)
+|+||++|++|||+ +++++.|+.++.+++++ ||+.+|++ ++++|+|++.+||+|+|++++|+|||||+||| |
T Consensus 181 aK~~d~~~plGP~ivt~dei~d~~~l~i~l~v~~NGe~~q~g~~~t~~mi~~~~~li~~ls~~~tL~pGDvI~TGTg~~p 260 (293)
T 2q18_X 181 SKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVP 260 (293)
T ss_dssp HHCSTTCEEEEEEEECGGGCSCTTSCEEEEEEEETTEEEEEEEEEGGGBCSCHHHHHHHHHTTCCCCTTEEEECCCSCCC
T ss_pred cccCCCCEEECCcEeCHHHcCCcceeEEEEEEEECCEEEEECCCCHHHhccCHHHHHHHHHcCCCCCCCCEEECCCCCCC
Confidence 59999999999997 56677788999999988 99999998 69999999999999999999999999999999 9
Q ss_pred CCCeeCCCCCEEEEEECceeEEEEEEEecc
Q 039682 73 QGVGPVKAGQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 73 ~g~~~l~~Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
.++.++++||+|+++|+|+|+++|+|..++
T Consensus 261 ~~~~~l~~GD~v~~~i~glG~l~n~v~~~~ 290 (293)
T 2q18_X 261 GRDKGLKDEDIVEITISNIGTLITPVKKRR 290 (293)
T ss_dssp CTTCCCCTTCEEEEEETTTEEEEEEEEECC
T ss_pred CCCcccCCCCEEEEEEcCcEEEEEEEEeee
Confidence 999999999999999999999999998653
No 10
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.96 E-value=3.1e-30 Score=199.16 Aligned_cols=102 Identities=39% Similarity=0.658 Sum_probs=97.2
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||++|++|||+ +++++.|+.++++++++||+++|++++++|+|+|.++|+|+|++++|+|||+|+||||.|+++++
T Consensus 324 ~K~~d~~~~lGp~iv~~~~~~d~~~l~i~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~tL~~GDvI~TGTp~gvg~l~ 403 (429)
T 1gtt_A 324 VKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVV 403 (429)
T ss_dssp HHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCC
T ss_pred cccCCCCEEECCcccCHHHcCCCccceEEEEECCEEEEEeCHHHcCCCHHHHHHHHhCCCCcCCCCEEEcCCCCCCeECC
Confidence 58999999999996 67777789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEEEecc
Q 039682 80 AGQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
+||+|+++|+|+|+++++|..+.
T Consensus 404 ~GD~v~~~i~glG~l~~~v~~~~ 426 (429)
T 1gtt_A 404 PGDEVVVEVEGVGRLVNRIVSEE 426 (429)
T ss_dssp TTCEEEEEETTTEEEEEEEEEHH
T ss_pred CCCEEEEEEcCcEEEEEEEEecC
Confidence 99999999999999999998653
No 11
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=99.96 E-value=1.1e-29 Score=185.33 Aligned_cols=99 Identities=32% Similarity=0.534 Sum_probs=91.1
Q ss_pred CCcCCCCcccCccccCCCCCCC-----cceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDP-----YNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGV 75 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~-----~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~ 75 (107)
||+||++|++|||+..+++.++ .++.+++++||+++|++++++|+|++.+||+|+|++++|+|||||+||||.|+
T Consensus 141 aK~~d~~~p~Gp~V~~~~~~d~~~dl~~~l~l~l~vNGe~~q~g~t~~m~~~~~~Lia~lS~~~tL~pGDvI~TGTp~Gv 220 (259)
T 1nkq_A 141 SKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGV 220 (259)
T ss_dssp HHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCC
T ss_pred eeccCcCCCcceEEECccccCcccccccceEEEEEECCEEEEEEcHHHcCCCHHHHHHHHhCCCCcCCCCEEEeCCCCCc
Confidence 5999999999999866655566 88999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCEEEEEECceeEEEEEEE
Q 039682 76 GPVKAGQKTTAGIAGLLVVRFDNK 99 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~g~G~l~~~v~ 99 (107)
+++++||+|+++|+|+|.+.+++.
T Consensus 221 g~l~~GD~v~~~i~glG~~~~~~~ 244 (259)
T 1nkq_A 221 GELKPGDRVHCELLQNNDNIVDMN 244 (259)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEE
T ss_pred EecCCCCEEEEEEEcCCceeEEEE
Confidence 999999999999999996555554
No 12
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.96 E-value=5.7e-29 Score=192.15 Aligned_cols=98 Identities=24% Similarity=0.349 Sum_probs=93.8
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||++|++||| +++.|+.++.+++++||+++|++++++|+|++.++|+|+|++++|+|||+|+||||.|++++++
T Consensus 109 aK~fd~~~~lGp~---~~~~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~li~~ls~~~tL~~GDvI~TGTp~g~~~l~~ 185 (429)
T 1gtt_A 109 AKCRDGFCPIGET---VALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQP 185 (429)
T ss_dssp HHCSTTCEEBCCC---BCCSCCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCEECT
T ss_pred cCCCCCCEEECCh---hhcCCccccEEEEEECCEEEEeCCHHHhcCCHHHHHHHHhcCCCcCCCCEEEEeccCcceecCC
Confidence 5999999999999 5566889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEec
Q 039682 81 GQKTTAGIAGLLVVRFDNKKR 101 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~ 101 (107)
||+|+++|+|+|.++++|...
T Consensus 186 GD~v~~~i~glG~l~~~v~~~ 206 (429)
T 1gtt_A 186 GDRVRVLAEGFPPLENPVVDE 206 (429)
T ss_dssp TCEEEEEETTSCCEEEEEEEG
T ss_pred CCEEEEEECCcceeEEEEEec
Confidence 999999999999999999865
No 13
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=99.95 E-value=2.2e-28 Score=179.16 Aligned_cols=101 Identities=21% Similarity=0.162 Sum_probs=93.5
Q ss_pred CCcCCCCc--------ccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHc-----CCccCCCCE
Q 039682 1 AKGQDTFT--------PISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISS-----IMTLFEGDV 66 (107)
Q Consensus 1 ~K~~d~~~--------~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~-----~~~L~~Gdv 66 (107)
+|+||++| ++|||+ +++++ |+.++.+++++||+++|++++++|+|+|.++|+|+|+ +++|+||||
T Consensus 150 ~k~~d~~aDn~s~~~~~lGp~~v~~~~~-d~~~l~i~l~vNGe~~q~g~~~~ml~~p~~~v~~ls~~l~~~g~tL~~Gdv 228 (270)
T 2wqt_A 150 IQFVDTVADNASCGVYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDI 228 (270)
T ss_dssp CCHHHHHHTGGGCCEEEECBCCBCSTTC-CCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCE
T ss_pred CChhcEEccCccCCCEeECcCcCCcccC-ChhhCeEEEEECCEEEEEEchhhccCCHHHHHHHHHHHHHhcCCCcCCCCE
Confidence 47888888 999996 66766 8999999999999999999999999999999999997 799999999
Q ss_pred EecCCCCCCeeCCCCCEEEEEECceeEEEEEEEecc
Q 039682 67 ILTGSPQGVGPVKAGQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 67 I~TGt~~g~~~l~~Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
|+||||.++.++++||+|+++|+|+|+++++|..++
T Consensus 229 I~TGT~~g~~~l~~GD~v~~~i~glG~l~~~v~~~~ 264 (270)
T 2wqt_A 229 ILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSSAA 264 (270)
T ss_dssp EEEEESSCCEECCTTCEEEEEETTTEEEEEEECC--
T ss_pred EEcCCCCCCeeCCCCCEEEEEEcCCceEEEEEEeCc
Confidence 999999999999999999999999999999998654
No 14
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=99.95 E-value=7.6e-28 Score=176.04 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=89.7
Q ss_pred CcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHc-----CCccCCCCEEecCCCCCC
Q 039682 2 KGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISS-----IMTLFEGDVILTGSPQGV 75 (107)
Q Consensus 2 K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~-----~~~L~~GdvI~TGt~~g~ 75 (107)
++|++++++|||+ +++++ |+.++.+++++||+++|++++++|+++|.++|+|+|+ +++|+|||||+||||.++
T Consensus 165 ~~~~~~~~lGp~~v~~~~~-d~~~l~~~l~vNGe~~q~g~t~~ml~~p~~~i~~ls~~l~~~g~tL~~GDvI~TGT~~g~ 243 (267)
T 2eb4_A 165 NAANAGVILGGRPIKPDEL-DLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRP 243 (267)
T ss_dssp GGGEEEEEECSCCBCTTSS-CGGGCEEEEEETTEEEEEEEGGGTTTSTTHHHHHHHHHHGGGTCCBCTTCEEECCCSSCC
T ss_pred ccccccEEECCCcCCcccC-ChhhCeEEEEECCEEEEEecHHhcccCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCC
Confidence 3678899999986 66665 8999999999999999999999999999999999986 469999999999999999
Q ss_pred eeCCCCCEEEEEECceeEEEEEEE
Q 039682 76 GPVKAGQKTTAGIAGLLVVRFDNK 99 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~g~G~l~~~v~ 99 (107)
.++++||+|+++|+|+|++++++.
T Consensus 244 ~~l~~GD~v~~~i~glG~l~~~~~ 267 (267)
T 2eb4_A 244 VPARKGDTFHVDYGNMGSISCRFV 267 (267)
T ss_dssp EECCTTCEEEEECGGGCEEEEEEC
T ss_pred EECCCCCEEEEEEcCCCeEEEEEC
Confidence 999999999999999999999873
No 15
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=99.93 E-value=2e-26 Score=174.56 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=88.6
Q ss_pred CcccCccc-cCCCCCCC-----cceEEEEEECCEEEEeec-cchhccCHHHHHHHHHcCCccCCCCEEecCCCCCC----
Q 039682 7 FTPISSVL-PKSAVPDP-----YNFELWLKVDREIRQQGS-TKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGV---- 75 (107)
Q Consensus 7 ~~~~Gp~i-~~~~~~~~-----~~~~~~l~vnG~~~~~~~-~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~---- 75 (107)
++++|||+ +++++.++ .++++++++||+++|+++ +++|+|+++++|+|+|++++|+|||||+||||.|+
T Consensus 214 ~~~~gP~iVt~del~~~~~~~~~~L~l~~~vNGe~~q~~~~t~~Mif~~~~lIa~lS~~~tL~pGDvI~TGTpsGv~~~~ 293 (359)
T 3lzk_A 214 SSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIVHAARTRPLSAGTIIGSGTVSNKLEGG 293 (359)
T ss_dssp CCEECSCEECHHHHGGGBCSSCBCSBEEEEETTEEEECCBTTSSCSSCHHHHHHHHTTTSCBCTTEEEECCSCCCCBTTB
T ss_pred ccccCCccccHHHcCccccCCccceEEEEEECCEEEEcCcCcccccCCHHHHHHHHhCCCCcCCCCEEEcCCcCCCCccc
Confidence 69999995 66666554 689999999999999999 99999999999999999999999999999999988
Q ss_pred -------------------------------eeCCCCCEEEEEECc------eeEEEEEEEeccC
Q 039682 76 -------------------------------GPVKAGQKTTAGIAG------LLVVRFDNKKRRR 103 (107)
Q Consensus 76 -------------------------------~~l~~Gd~v~~~i~g------~G~l~~~v~~~~~ 103 (107)
.+|++||+|++++.+ +|+++++|....+
T Consensus 294 ~~~~~~~~~~G~~~l~E~~~~~~~~~g~~~~~fL~~GD~V~i~~~~~~g~~~~G~l~n~V~~~~~ 358 (359)
T 3lzk_A 294 PGRPVSEGGAGYSCIAELRMIETIEGGAPKTQFLKFGDVVRIEMKDRTGHSIFGAIEQKVGKYER 358 (359)
T ss_dssp CCCCGGGTSCBCSSHHHHHHHHHHHHSSCCSCCBCTTCEEEEEEBCTTSCBSSCCEEEEEEECCC
T ss_pred ccccccccccccccchhhhhhhhhccCCCCCCcCCCCCEEEEEEEcCCCcccccceEEEEEeCCC
Confidence 279999999999999 9999999987553
No 16
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=99.88 E-value=4.3e-23 Score=159.07 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCcCCCCcccCccc-cCCCCC--------------------CCc--ceEEEEEEC------CEEEEeeccchhccCHHHH
Q 039682 1 AKGQDTFTPISSVL-PKSAVP--------------------DPY--NFELWLKVD------REIRQQGSTKDMIFKIPYL 51 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~--------------------~~~--~~~~~l~vn------G~~~~~~~~~~m~~~~~~l 51 (107)
+|+||++ +|||+ +.+++. ++. ++.+++++| |+++|++++++|+|++.++
T Consensus 254 aK~f~t~--iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~~~~~~l 331 (421)
T 1hyo_A 254 GKSFGTT--ISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQ 331 (421)
T ss_dssp HHHTCEE--ECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHH
T ss_pred ccCcCCC--CCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhcCCHHHH
Confidence 5899997 99997 444332 222 688999999 9999999999999999999
Q ss_pred HHHHH-cCCccCCCCEEecCCCCCCe---------------------------eCCCCCEEEEEEC--------ceeEEE
Q 039682 52 ISHIS-SIMTLFEGDVILTGSPQGVG---------------------------PVKAGQKTTAGIA--------GLLVVR 95 (107)
Q Consensus 52 i~~ls-~~~~L~~GdvI~TGt~~g~~---------------------------~l~~Gd~v~~~i~--------g~G~l~ 95 (107)
|+|++ ++++|+|||||+||||.|++ +|++||+|++++. |+|+++
T Consensus 332 Ia~lss~g~tL~pGDlI~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~~~g~~igfG~~~ 411 (421)
T 1hyo_A 332 LTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCA 411 (421)
T ss_dssp HHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred HHHHHHCCCccCCCCEEEcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCccCCCCCEEEEEEEECCCCceeeeeeeE
Confidence 99995 89999999999999999874 4899999999998 899999
Q ss_pred EEEEecc
Q 039682 96 FDNKKRR 102 (107)
Q Consensus 96 ~~v~~~~ 102 (107)
++|....
T Consensus 412 ~~V~~a~ 418 (421)
T 1hyo_A 412 GKVLPAL 418 (421)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9998654
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.21 E-value=0.34 Score=28.09 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=29.8
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHHc---CCc-cCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHISS---IMT-LFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~---~~~-L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
|++++||+.+.- .. .++.+|++.+.- ... ..=|.+|--..+ .-..|+.||+|++
T Consensus 1 M~I~vNG~~~e~-~~----~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~-~~~~L~dGD~veI 58 (73)
T 2kl0_A 1 MLVTINGEQREV-QS----ASVAALMTELDCTGGHFAVALNYDVVPRGKW-DETPVTAGDEIEI 58 (73)
T ss_dssp CCEEETTEEECC-CC----SBHHHHHHHTTCCSSSCEEEESSSEECHHHH-TTCBCCTTCEEEE
T ss_pred CEEEECCEEEEc-CC----CcHHHHHHHcCCCCCcEEEEECCEECChHHc-CcccCCCCCEEEE
Confidence 457899997764 21 468888887741 111 112222222211 1125888888876
No 18
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=82.89 E-value=1.7 Score=26.07 Aligned_cols=59 Identities=8% Similarity=-0.055 Sum_probs=30.7
Q ss_pred ceEEEEEECCEEEEeeccchhccCHHHHHHHHHc---CCccC-CCCEEecCCCCCCeeCCCCCEEEE
Q 039682 24 NFELWLKVDREIRQQGSTKDMIFKIPYLISHISS---IMTLF-EGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 24 ~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~---~~~L~-~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
...|++++||+.+.-... ..++.+|++++.. ...+. -|.+|--..+. -..|++||+|++
T Consensus 18 ~~~M~I~vNGe~~el~~~---~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~-~~~L~dGD~Vei 80 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKWKKD---TGTIQDLLASYQLENKIVIVERNKEIIGKERYH-EVELCDRDVIEI 80 (87)
T ss_dssp ----CEEETTEEECCSSS---CCBHHHHHHHTTCTTSCCEEEETTEEECGGGTT-TSBCCSSSEEEE
T ss_pred CcceEEEECCEEEECCCC---CCcHHHHHHHhCCCCCCEEEEECCEECChhhcC-CcCCCCCCEEEE
Confidence 456789999998764221 1267888888741 11111 22222111111 135899999986
No 19
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=77.89 E-value=1.2 Score=26.09 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=29.2
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHHcC----CccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHISSI----MTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~----~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
|++++||+.+.-... ---++.+||+.+.-. ..+.--.-|..=.--.-..|+.||+|++
T Consensus 1 M~I~vNGe~~e~~~~--~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 1 MNLTVNGKPSTVDGA--ESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp CEEEETTEEEECSSC--SCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEE
T ss_pred CEEEECCEEEEcCCC--CCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEE
Confidence 468999998763200 013678888877421 1111111111111001125888888876
No 20
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=77.28 E-value=4.1 Score=22.44 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=29.0
Q ss_pred EEECCEEEEeeccchhccCHHHHHHHHHc---CC-ccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 29 LKVDREIRQQGSTKDMIFKIPYLISHISS---IM-TLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 29 l~vnG~~~~~~~~~~m~~~~~~li~~ls~---~~-~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
+++||+.+.- .. .++.+|++++.. .. -..-|.+|---.. .-..+++||+|++
T Consensus 2 i~vNg~~~~~-~~----~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~-~~~~L~dgD~v~i 57 (64)
T 2cu3_A 2 VWLNGEPRPL-EG----KTLKEVLEEMGVELKGVAVLLNEEAFLGLEV-PDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEECC-TT----CCHHHHHHHHTBCGGGEEEEETTEEEEGGGC-CCCCCCTTCEEEE
T ss_pred EEECCEEEEc-CC----CcHHHHHHHcCCCCCcEEEEECCEECCcccc-CCcCCCCCCEEEE
Confidence 6899998864 22 378888888851 11 1122233322111 1125889998876
No 21
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=69.69 E-value=1.1 Score=25.02 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=17.9
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHH
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHIS 56 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls 56 (107)
|++++||+.+.-... .++.++++++.
T Consensus 1 m~i~vNg~~~~~~~~----~tv~~ll~~l~ 26 (66)
T 1f0z_A 1 MQILFNDQAMQCAAG----QTVHELLEQLD 26 (66)
T ss_dssp CCEEESSCEECCCTT----CCHHHHHHHHT
T ss_pred CEEEECCEEEEcCCC----CcHHHHHHHcC
Confidence 357899987763322 36888888884
No 22
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=53.96 E-value=38 Score=21.17 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCccCCCCEEecCCCCCCe--------eCCCCCEEEE--EECceeEEEEEEEecc
Q 039682 58 IMTLFEGDVILTGSPQGVG--------PVKAGQKTTA--GIAGLLVVRFDNKKRR 102 (107)
Q Consensus 58 ~~~L~~GdvI~TGt~~g~~--------~l~~Gd~v~~--~i~g~G~l~~~v~~~~ 102 (107)
.+.+.||.-+.- .|.|.+ ++++||+|.+ .|++=|.+++.+....
T Consensus 66 ~i~ipag~~v~l-~PGG~HvML~gl~~~l~~G~~v~ltL~Fe~~~~v~v~~~V~~ 119 (120)
T 2k6w_A 66 FLEVPPKGRVEL-KPGGYHFMLLGLKRPLKAGEEVELDLLFAGGKVLKVVLPVEA 119 (120)
T ss_dssp CEEECTTCEEEE-CTTTEEEEEEEESSCBCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred cEeECCCCEEec-cCCceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 456777766544 355544 5899997766 5667778877776543
No 23
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=51.27 E-value=7.7 Score=21.72 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=28.7
Q ss_pred EEEEEECCEE----EEeeccchhccCHHHHHHHHHcCCccCCCCE--EecCCCC-CCeeCCCCCEEEE
Q 039682 26 ELWLKVDREI----RQQGSTKDMIFKIPYLISHISSIMTLFEGDV--ILTGSPQ-GVGPVKAGQKTTA 86 (107)
Q Consensus 26 ~~~l~vnG~~----~~~~~~~~m~~~~~~li~~ls~~~~L~~Gdv--I~TGt~~-g~~~l~~Gd~v~~ 86 (107)
.|++++||+. +.-.. -.++.+|+.++. +.+..+ ..=|... .-..+++||+|++
T Consensus 4 ~m~i~vNg~~~~~~~~~~~----~~tv~~Ll~~l~----~~~~~v~vavN~~~v~~~~~L~~gD~V~i 63 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGA----PRRIKDVLGELE----IPIETVVVKKNGQIVIDEEEIFDGDIIEV 63 (70)
T ss_dssp CEEEEEEETTEEEEEEESS----CCBHHHHHHHTT----CCTTTEEEEETTEECCTTSBCCTTCEEEE
T ss_pred eEEEEEeCccCceeEECCC----CCcHHHHHHHhC----CCCCCEEEEECCEECCCcccCCCCCEEEE
Confidence 3788999986 43211 137888888874 111111 1111110 0116899998876
No 24
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=45.65 E-value=32 Score=20.15 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCccCCCCEEecCC
Q 039682 48 IPYLISHISSIMTLFEGDVILTGS 71 (107)
Q Consensus 48 ~~~li~~ls~~~~L~~GdvI~TGt 71 (107)
+.+.|...-.+..+..||+|....
T Consensus 29 ~~~~lk~~L~grPV~~GD~I~i~~ 52 (83)
T 2jv2_A 29 FVDVIRIKLQGKTVRTGDVIGISI 52 (83)
T ss_dssp HHHHHHHHHTTSEECTTCEEEEEE
T ss_pred HHHHHHHHHCCCCccCCCEEEEee
Confidence 344554445667777777776533
No 25
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=43.93 E-value=11 Score=24.93 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=12.1
Q ss_pred ccCCCCEEecCCCC
Q 039682 60 TLFEGDVILTGSPQ 73 (107)
Q Consensus 60 ~L~~GdvI~TGt~~ 73 (107)
.|++||+|++.+..
T Consensus 4 ~l~~GDlvf~~~~~ 17 (186)
T 2if6_A 4 QPQTGDIIFQISRS 17 (186)
T ss_dssp CCCTTCEEEECCCS
T ss_pred cCCCCCEEEEEcCC
Confidence 69999999998864
No 26
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=39.82 E-value=11 Score=22.10 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=9.6
Q ss_pred HcCCccCCCCEE
Q 039682 56 SSIMTLFEGDVI 67 (107)
Q Consensus 56 s~~~~L~~GdvI 67 (107)
++++.+++||||
T Consensus 46 ar~~G~k~GdVv 57 (77)
T 1eik_A 46 AKAIGAKRGDIV 57 (77)
T ss_dssp HHGGGCCTTCEE
T ss_pred hHHhCCCCCCEE
Confidence 467888888887
No 27
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=37.29 E-value=12 Score=22.01 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=10.4
Q ss_pred HcCCccCCCCEEe
Q 039682 56 SSIMTLFEGDVIL 68 (107)
Q Consensus 56 s~~~~L~~GdvI~ 68 (107)
++++.+++||||=
T Consensus 44 ar~~G~k~GdVvk 56 (78)
T 1hmj_A 44 IQEIGAKEGDVVR 56 (78)
T ss_pred hHHhCCCCCCEEE
Confidence 4788899999874
No 28
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=36.26 E-value=15 Score=23.63 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=10.2
Q ss_pred CCccCCCCEEecCCCC
Q 039682 58 IMTLFEGDVILTGSPQ 73 (107)
Q Consensus 58 ~~~L~~GdvI~TGt~~ 73 (107)
...|+.||+|.-|.+.
T Consensus 117 ~~~L~~GD~I~lG~~~ 132 (149)
T 1gxc_A 117 RRPLNNNSEIALSLSR 132 (149)
T ss_dssp EEECCTTEEEEESSTT
T ss_pred eEECCCCCEEEECCCC
Confidence 3567777777776653
No 29
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=35.97 E-value=42 Score=21.41 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHH---cC-----CccCCCCEEecCCCCCCeeCCCCCEEEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHIS---SI-----MTLFEGDVILTGSPQGVGPVKAGQKTTAGI 88 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~-----~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i 88 (107)
=++.++++...-.-.+++..+=.+-+-|++ .+ ..-.||.|-+.|.. +..++.|+.+++.+
T Consensus 59 d~l~i~~~~Y~ItaVG~~A~~NL~~LGHiTl~Fdg~~~~~~~~lPG~I~v~~~~--~p~i~~G~~I~i~~ 126 (129)
T 2f9h_A 59 DHLKIGDTNYTITKVGSFANSNLQSIAHSTLIFADAPTDEDDVIRNGVYLTPHQ--LPKITIGTTIDYLV 126 (129)
T ss_dssp CEEEETTEEEEEEEECTTHHHHHHHHCCEEEECSCCCSSGGGSCTTEEEEESCS--CCCCCTTCEEEEEC
T ss_pred CEEEECCEEEEEEEEhHHHHHHHHhcCCEEEEECCCCCCCcCCcCCEEEECCCC--CCccCCCCEEEEEE
Confidence 467888887776666666655555555665 22 34689999999864 44589999998873
No 30
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=33.68 E-value=11 Score=22.40 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.1
Q ss_pred HcCCccCCCCEE
Q 039682 56 SSIMTLFEGDVI 67 (107)
Q Consensus 56 s~~~~L~~GdvI 67 (107)
++++.+++||||
T Consensus 52 a~~~g~k~GdVv 63 (84)
T 4ayb_H 52 ARSINAKPGDII 63 (84)
T ss_dssp HHHHTCCTTCEE
T ss_pred HHhhCCCCCCEE
Confidence 456788888886
No 31
>1jb3_A Agrin; neuromuscular junction, interaction coiled-DOIL proteins with globular proteins, OB-fold, TIMP, cell adhesion; 1.60A {Gallus gallus} SCOP: b.40.3.2 PDB: 1pxu_A 1jc7_A 3i70_A
Probab=31.70 E-value=12 Score=24.18 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=16.7
Q ss_pred cCCCCEEecCCCCCCeeCCCC
Q 039682 61 LFEGDVILTGSPQGVGPVKAG 81 (107)
Q Consensus 61 L~~GdvI~TGt~~g~~~l~~G 81 (107)
.+--|||+|||..+.-.+++.
T Consensus 10 ~e~AdVVltgtV~~i~~~~~~ 30 (131)
T 1jb3_A 10 EEEANVVLTGTVEEIMNVDPV 30 (131)
T ss_dssp HHTCSEEEEEEEEEEEEEETT
T ss_pred HHhCCEEEEEEEEeeeccCCC
Confidence 345699999999888777776
No 32
>1xkp_B Chaperone protein SYCN; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=31.30 E-value=1e+02 Score=19.57 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCccCCCCEEecCCCCCCeeCCCCCEEEEEECceeEEEEE
Q 039682 48 IPYLISHISSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRFD 97 (107)
Q Consensus 48 ~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g~G~l~~~ 97 (107)
+...|+...+.+.+...| .++..|..++++.|++.+.
T Consensus 4 I~~~i~~F~r~mG~~~~~-------------~~~gliqLd~E~sGtL~iE 40 (124)
T 1xkp_B 4 IEPIISHFCQDLGVPTSS-------------PLSPLIQLEMAQSGTLQLE 40 (124)
T ss_dssp THHHHHHHHHHTTCCCCS-------------SCCSEEEEEETTTEEEEEE
T ss_pred hHHHHHHHHHHcCCCCCC-------------CCCceEEEEeccCceEEEe
Confidence 345666777777777655 3566788999999988776
No 33
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii}
Probab=30.95 E-value=63 Score=22.94 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=33.8
Q ss_pred EEEEECCEEEEeeccchhccCHH--HHHHHHHcCCccCCCCEEecCCCCCCee--CCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIP--YLISHISSIMTLFEGDVILTGSPQGVGP--VKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~--~li~~ls~~~~L~~GdvI~TGt~~g~~~--l~~Gd~v~~ 86 (107)
.+-+++|+.+.--+++ ++.+. -.+..|.+ +.+--+|.+||+.+..+ +++||-|-.
T Consensus 55 ytG~~~G~~V~v~~~G--iG~psaai~~~eLi~---~gv~~iIriGtaGgL~~~~l~~GDiVI~ 113 (279)
T 3mb8_A 55 FRVVYDSQPITVISHG--IGCPGTSIAIEELAY---LGAKVIIRAGTCGSLKPKTLKQGDVCVT 113 (279)
T ss_dssp EEEEETTEEEEEEECC--SSHHHHHHHHHHHHH---TTCCEEEEEEEEEESCTTTSCTTCEEEE
T ss_pred EEEEECCEEEEEEECC--CCHHHHHHHHHHHHH---CCCCEEEEeecccCcCcccCCCCCEEEe
Confidence 4456788754433332 22222 22223332 57789999999988874 899997754
No 34
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A*
Probab=30.70 E-value=70 Score=22.61 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=33.0
Q ss_pred EEEECCEEEEeeccchhccCHH--HHHHHHHcCCccCCCCEEecCCCCCCee--CCCCCEEEE
Q 039682 28 WLKVDREIRQQGSTKDMIFKIP--YLISHISSIMTLFEGDVILTGSPQGVGP--VKAGQKTTA 86 (107)
Q Consensus 28 ~l~vnG~~~~~~~~~~m~~~~~--~li~~ls~~~~L~~GdvI~TGt~~g~~~--l~~Gd~v~~ 86 (107)
+-+++|+.+.--+++ ++.+. -.+..|.+ +.+--+|.+||+.+..+ +++||-|-.
T Consensus 52 tG~~~G~~V~v~~~G--iG~psaai~~~eL~~---~gv~~iI~~GtaGgL~~~~i~~GDiVI~ 109 (275)
T 3phc_A 52 ECHYKGQKFLCVSHG--VGSAGCAVCFEELCQ---NGAKVIIRAGSCGSLQPDLIKRGDICIC 109 (275)
T ss_dssp EEEETTEEEEEEECC--SSHHHHHHHHHHHHT---TTCCEEEEEEEEEESCTTTCCTTCEEEE
T ss_pred EEEECCEEEEEEECC--CChHHHHHHHHHHHH---CCCCEEEEeeeecCcccccCCCCcEEEE
Confidence 346677754433332 22222 22223333 57789999999988874 899997754
No 35
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=29.91 E-value=46 Score=26.17 Aligned_cols=42 Identities=29% Similarity=0.280 Sum_probs=25.3
Q ss_pred cCCCCEEec--CCCCC------------------CeeCCCCCEEEEEECcee-EEEEEEEecc
Q 039682 61 LFEGDVILT--GSPQG------------------VGPVKAGQKTTAGIAGLL-VVRFDNKKRR 102 (107)
Q Consensus 61 L~~GdvI~T--Gt~~g------------------~~~l~~Gd~v~~~i~g~G-~l~~~v~~~~ 102 (107)
|++||||+. |.+-. +...++||+|++++-.=| ..++.|+-.+
T Consensus 294 l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl~~ 356 (539)
T 4fln_A 294 LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRP 356 (539)
T ss_dssp CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEECBC
T ss_pred ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 889999876 33221 112578999998885322 3555555443
No 36
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=27.37 E-value=47 Score=19.28 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=8.2
Q ss_pred CccCCCCEEec
Q 039682 59 MTLFEGDVILT 69 (107)
Q Consensus 59 ~~L~~GdvI~T 69 (107)
..|++||+|+.
T Consensus 54 agl~~GD~I~~ 64 (107)
T 2h2b_A 54 GQLQENDRVAM 64 (107)
T ss_dssp TTBCTTCEEEE
T ss_pred hCCCCCCEEEE
Confidence 46888888875
No 37
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=27.22 E-value=54 Score=20.43 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=10.5
Q ss_pred CccCCCCEEecCCCC
Q 039682 59 MTLFEGDVILTGSPQ 73 (107)
Q Consensus 59 ~~L~~GdvI~TGt~~ 73 (107)
..|+.||+|.-|...
T Consensus 94 ~~L~~GD~I~iG~~~ 108 (131)
T 3hx1_A 94 HIIQTGDEIVMGPQV 108 (131)
T ss_dssp EECCTTCEEECSTTC
T ss_pred EECCCCCEEEECCEE
Confidence 567777777777643
No 38
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=27.00 E-value=26 Score=19.86 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=20.0
Q ss_pred CccCCCCEEec--CCCCC-C-------eeCCCCCEEEEEEC
Q 039682 59 MTLFEGDVILT--GSPQG-V-------GPVKAGQKTTAGIA 89 (107)
Q Consensus 59 ~~L~~GdvI~T--Gt~~g-~-------~~l~~Gd~v~~~i~ 89 (107)
..|++||+|+. |.+.. . ...++|+.+++++.
T Consensus 35 aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~ 75 (87)
T 2i6v_A 35 IGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75 (87)
T ss_dssp TTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEE
T ss_pred CCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 37999999985 32211 0 12457888888774
No 39
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=25.48 E-value=1.2e+02 Score=18.49 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.1
Q ss_pred CccCCCCEEecCCCCCCeeCCCCCEEEEEECc
Q 039682 59 MTLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90 (107)
Q Consensus 59 ~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g 90 (107)
-+++.||+|+-=.- ..++.||.|-+.+++
T Consensus 62 p~i~~Gd~v~vd~~---~~~~~Gdivv~~~~~ 90 (133)
T 2hnf_A 62 TSFPDGMLILVDPE---QAVEPGDFCIARLGG 90 (133)
T ss_dssp CCCCTTCEEEEETT---SCCCTTSEEEEEETT
T ss_pred CccCCCCEEEEccC---CCCCCCCEEEEEECC
Confidence 57999999986542 257899999999987
No 40
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=25.25 E-value=54 Score=17.08 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.3
Q ss_pred CCCCCEEEEEECcee
Q 039682 78 VKAGQKTTAGIAGLL 92 (107)
Q Consensus 78 l~~Gd~v~~~i~g~G 92 (107)
+++||.+++.+++=+
T Consensus 26 i~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 26 IKEGDLVKVTFDESE 40 (53)
T ss_dssp CCTTCEEEEEECSSS
T ss_pred cCCCCEEEEEEECCE
Confidence 789999999987643
No 41
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=24.62 E-value=54 Score=21.75 Aligned_cols=48 Identities=15% Similarity=-0.069 Sum_probs=28.5
Q ss_pred cceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCCCCEEEEEEC
Q 039682 23 YNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIA 89 (107)
Q Consensus 23 ~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~ 89 (107)
..+.+.|..||+.+........-. .-| ..++ ..+..|+.||+|.+++.
T Consensus 106 ~~~~v~L~~Ng~~i~~~~~~~~~~----------------~~~-~~S~--s~vL~L~~GD~Vwl~l~ 153 (178)
T 1o91_A 106 GNVWVALFKNNEPMMYTYDEYKKG----------------FLD-QASG--SAVLLLRPGDQVFLQMP 153 (178)
T ss_dssp EEEEEEEEETTEEEEEEEECCBTT----------------BCE-EEEE--EEEEEECTTCEEEEECC
T ss_pred ceEEEEEEECCEEEEEEEcccCCC----------------cce-EEeE--EEEEEECCCCEEEEEEe
Confidence 356788999998766543221100 001 1222 35667899999988885
No 42
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=24.44 E-value=1.2e+02 Score=17.99 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=22.2
Q ss_pred ccCCCCEEecCCCCCCeeCCCCCEEEEEECc
Q 039682 60 TLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90 (107)
Q Consensus 60 ~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g 90 (107)
+++.||+|+-=... .++.||.+-+.++|
T Consensus 41 ~i~~Gd~v~vd~~~---~~~~gdivv~~~~~ 68 (116)
T 1umu_A 41 GISDGDLLIVDSAI---TASHGDIVIAAVDG 68 (116)
T ss_dssp TCCTTCEEEEETTS---CCCTTCEEEEEETT
T ss_pred CCCCCCEEEEEcCC---CCCCCCEEEEEECC
Confidence 69999999864422 47899999888887
No 43
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=24.40 E-value=77 Score=17.67 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=18.9
Q ss_pred eeCCCCCEEEEEECce----eEEEEEEEec
Q 039682 76 GPVKAGQKTTAGIAGL----LVVRFDNKKR 101 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~g~----G~l~~~v~~~ 101 (107)
-.++.||+|++.+-.+ |.+++.++..
T Consensus 44 ~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 44 ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 3589999999887654 6677776543
No 44
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=24.35 E-value=56 Score=18.80 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=25.2
Q ss_pred ccCCCCEEec--CCCCCCe--------eCCCCCEEEEEECcee-EEEEEEEec
Q 039682 60 TLFEGDVILT--GSPQGVG--------PVKAGQKTTAGIAGLL-VVRFDNKKR 101 (107)
Q Consensus 60 ~L~~GdvI~T--Gt~~g~~--------~l~~Gd~v~~~i~g~G-~l~~~v~~~ 101 (107)
.|++||+|+. |.+..-. ..++|+.+++++..=| ..++.+...
T Consensus 17 GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 69 (91)
T 2kjp_A 17 KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLK 69 (91)
T ss_dssp CCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECC
T ss_pred cCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 6999999985 4432110 1347999999886433 344455443
No 45
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=24.05 E-value=57 Score=21.20 Aligned_cols=47 Identities=6% Similarity=-0.074 Sum_probs=28.8
Q ss_pred ceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCCCCEEEEEEC
Q 039682 24 NFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIA 89 (107)
Q Consensus 24 ~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~ 89 (107)
.+.+.|..||+.+........ .+. .-+.|-..+..|+.||+|.+++.
T Consensus 89 ~~~v~L~~Ng~~i~~~~~~~~------------------~~~-~~~~S~s~vL~L~~GD~Vwv~~~ 135 (160)
T 1gr3_A 89 HVWVGLYKNGTPVMYTYDEYT------------------KGY-LDQASGSAIIDLTENDQVWLQLP 135 (160)
T ss_dssp EEEEEEEETTEEEEEEEECCB------------------TTB-CEEEEEEEEEEECTTCEEEEECC
T ss_pred eEEEEEEECCEEEEEEeeccC------------------CCc-ccEEeEEEEEEECCCCEEEEEEe
Confidence 567889999987765543211 010 11222235668999999998885
No 46
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=23.97 E-value=1.1e+02 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=16.5
Q ss_pred eCCCCCEEEEEEC------ceeEEEEEEEe
Q 039682 77 PVKAGQKTTAGIA------GLLVVRFDNKK 100 (107)
Q Consensus 77 ~l~~Gd~v~~~i~------g~G~l~~~v~~ 100 (107)
++.|||+++++++ ++..++..+..
T Consensus 120 pV~pGD~L~~~v~v~~~~~g~~~~~~~~~v 149 (168)
T 1u1z_A 120 PVLPGDQLQLHAKFISVKRSIWKFDCHATV 149 (168)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEEEeCCEEEEEEEEEE
Confidence 5899999877653 45566665554
No 47
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=23.90 E-value=1.2e+02 Score=18.61 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=16.1
Q ss_pred eCCCCCEEEEEEC------ceeEEEEEEEe
Q 039682 77 PVKAGQKTTAGIA------GLLVVRFDNKK 100 (107)
Q Consensus 77 ~l~~Gd~v~~~i~------g~G~l~~~v~~ 100 (107)
++.|||++++++. ++..++..+..
T Consensus 100 pV~pGd~l~~~~~v~~~~~~~~~~~~~~~~ 129 (146)
T 3d6x_A 100 PVRPGDRLDYEMSVVKNRGNMWIFKGQAFV 129 (146)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEEE
Confidence 6899998877654 45555655543
No 48
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=23.75 E-value=31 Score=19.39 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=9.0
Q ss_pred ccCCCCEEec
Q 039682 60 TLFEGDVILT 69 (107)
Q Consensus 60 ~L~~GdvI~T 69 (107)
.|++||+|+.
T Consensus 45 Gl~~GD~I~~ 54 (90)
T 2eaq_A 45 QLQVDDEIIA 54 (90)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999986
No 49
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=23.52 E-value=32 Score=20.23 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=19.9
Q ss_pred ccCCCCEEec--CCCC----CC----eeCCCCCEEEEEEC
Q 039682 60 TLFEGDVILT--GSPQ----GV----GPVKAGQKTTAGIA 89 (107)
Q Consensus 60 ~L~~GdvI~T--Gt~~----g~----~~l~~Gd~v~~~i~ 89 (107)
.|++||+|+. |.+. .+ ..+.+|+.+.+++.
T Consensus 54 Gl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~ 93 (105)
T 2i4s_A 54 GLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 93 (105)
T ss_dssp TCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEE
Confidence 7999999985 3221 11 12468898888874
No 50
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A
Probab=23.51 E-value=1e+02 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.9
Q ss_pred cCCCCEEecCCCCCCee-CCCCCEEEEE
Q 039682 61 LFEGDVILTGSPQGVGP-VKAGQKTTAG 87 (107)
Q Consensus 61 L~~GdvI~TGt~~g~~~-l~~Gd~v~~~ 87 (107)
+.+--+|.+|++.+..+ +++||.|-.+
T Consensus 79 ~~~~~iI~~G~aGgl~~~~~~GDvvi~~ 106 (236)
T 1je0_A 79 LGANVFIRYGTTGALVPYINLGEYIIVT 106 (236)
T ss_dssp TTCCEEEEEEEEEECSTTCCTTCEEEEE
T ss_pred cCCCEEEEEeccccCCCCCCCCCEEEEh
Confidence 56778999999988864 8999987653
No 51
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6}
Probab=23.26 E-value=1e+02 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.5
Q ss_pred cCCCCEEecCCCCCCee-CCCCCEEEE
Q 039682 61 LFEGDVILTGSPQGVGP-VKAGQKTTA 86 (107)
Q Consensus 61 L~~GdvI~TGt~~g~~~-l~~Gd~v~~ 86 (107)
+.+--+|.+|++.+..+ +++||.|-.
T Consensus 110 ~g~~~iI~~G~aGgl~~~~~~GDvVi~ 136 (282)
T 3qpb_A 110 CGADTFIRVGTCGGIELDVKGGDIVIA 136 (282)
T ss_dssp TTCCEEEEEEEEEECSTTCCTTCEEEE
T ss_pred cCCCEEEEeeeeecCCCCCCCCcEEEe
Confidence 57888999999988864 899997754
No 52
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=23.21 E-value=1.2e+02 Score=19.52 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=16.6
Q ss_pred eCCCCCEEEEEEC------ceeEEEEEEEe
Q 039682 77 PVKAGQKTTAGIA------GLLVVRFDNKK 100 (107)
Q Consensus 77 ~l~~Gd~v~~~i~------g~G~l~~~v~~ 100 (107)
++.|||++++++. +++.++..+..
T Consensus 110 ~V~PGd~L~i~v~~~~~~~~~~~~~~~~~v 139 (160)
T 4h4g_A 110 VVEPGDQLILNVTFERYIRGIWKFKAVAEV 139 (160)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEEE
Confidence 5899999888763 56666655544
No 53
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=23.16 E-value=1.1e+02 Score=19.10 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.3
Q ss_pred eCCCCCEEEEEEC
Q 039682 77 PVKAGQKTTAGIA 89 (107)
Q Consensus 77 ~l~~Gd~v~~~i~ 89 (107)
++.|||++++++.
T Consensus 106 pV~pGd~l~~~~~ 118 (154)
T 1z6b_A 106 PVLPGDTLTMQAN 118 (154)
T ss_dssp CCCTTCEEEEEEE
T ss_pred ccCCCCEEEEEEE
Confidence 6899999887653
No 54
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=23.12 E-value=65 Score=18.58 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=7.2
Q ss_pred CccCCCCEEec
Q 039682 59 MTLFEGDVILT 69 (107)
Q Consensus 59 ~~L~~GdvI~T 69 (107)
..|++||+|+.
T Consensus 54 ggl~~GD~I~~ 64 (101)
T 2yt7_A 54 GALSIGDRLTA 64 (101)
T ss_dssp SSCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 35777777764
No 55
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=22.82 E-value=80 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=27.6
Q ss_pred EEEEEECCEEEEeeccchhccCHHHHHHH--HHcCCccCCCCEEecCCC
Q 039682 26 ELWLKVDREIRQQGSTKDMIFKIPYLISH--ISSIMTLFEGDVILTGSP 72 (107)
Q Consensus 26 ~~~l~vnG~~~~~~~~~~m~~~~~~li~~--ls~~~~L~~GdvI~TGt~ 72 (107)
.+.+..+|+.. ..++..++.. .+....|++||+|.--.-
T Consensus 192 ~V~l~R~g~~~--------~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~ 232 (359)
T 2j58_A 192 NVVLTHNGKDT--------KISLYALMQKGDLTQNHLLYHGDILFIPSN 232 (359)
T ss_dssp CEEEEETTEEE--------EECHHHHHTTCBGGGCCBCCTTCEEEECBG
T ss_pred eEEEEECCeEE--------EEEHHHHhhcCCcccceeccCCCeEEEeec
Confidence 46677788652 4566666653 367899999999998764
No 56
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=22.56 E-value=1.4e+02 Score=18.66 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=17.3
Q ss_pred eeCCCCCEEEEEEC------ceeEEEEEEEe
Q 039682 76 GPVKAGQKTTAGIA------GLLVVRFDNKK 100 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~------g~G~l~~~v~~ 100 (107)
.++.|||+++++++ ++..++..+..
T Consensus 105 ~pV~PGd~L~i~~~v~~~~~~~~~~~~~~~v 135 (152)
T 4i83_A 105 RQVIPGDQLVFEVELLTSRRGIGKFNAVAKV 135 (152)
T ss_dssp SCCCTTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cccCCCCEEEEEEEEEEeeCCEEEEEEEEEE
Confidence 36899999888764 56666666553
No 57
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=22.43 E-value=36 Score=19.01 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=9.3
Q ss_pred CccCCCCEEec
Q 039682 59 MTLFEGDVILT 69 (107)
Q Consensus 59 ~~L~~GdvI~T 69 (107)
..|++||+|+.
T Consensus 42 aGL~~GD~I~~ 52 (87)
T 2pa1_A 42 ADLRPGDIIVA 52 (87)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 46999999985
No 58
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.30 E-value=50 Score=18.99 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.8
Q ss_pred eeCCCCCEEEEEECce
Q 039682 76 GPVKAGQKTTAGIAGL 91 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~g~ 91 (107)
..+++||+|++++..-
T Consensus 52 ~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEe
Confidence 3589999999998643
No 59
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=22.09 E-value=35 Score=19.24 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=9.3
Q ss_pred CccCCCCEEec
Q 039682 59 MTLFEGDVILT 69 (107)
Q Consensus 59 ~~L~~GdvI~T 69 (107)
..|++||+|+.
T Consensus 43 aGl~~GD~I~~ 53 (91)
T 2pkt_A 43 ANLCIGDVITA 53 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 36999999985
No 60
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=22.05 E-value=51 Score=19.10 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.0
Q ss_pred CeeCCCCCEEEEEECc
Q 039682 75 VGPVKAGQKTTAGIAG 90 (107)
Q Consensus 75 ~~~l~~Gd~v~~~i~g 90 (107)
...+++||+|++++..
T Consensus 45 l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRL 60 (82)
T ss_dssp CSSCSTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 4458999999999873
No 61
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=22.04 E-value=61 Score=17.76 Aligned_cols=8 Identities=63% Similarity=0.775 Sum_probs=3.8
Q ss_pred cCCCCEEe
Q 039682 61 LFEGDVIL 68 (107)
Q Consensus 61 L~~GdvI~ 68 (107)
|++||+|+
T Consensus 41 l~~GD~I~ 48 (83)
T 2kv8_A 41 LRAGDQIL 48 (83)
T ss_dssp CCTTCEEE
T ss_pred CCCCCEEE
Confidence 44444444
No 62
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=21.88 E-value=90 Score=17.53 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=6.3
Q ss_pred ccCCCCEEec
Q 039682 60 TLFEGDVILT 69 (107)
Q Consensus 60 ~L~~GdvI~T 69 (107)
.|++||+|+.
T Consensus 51 gL~~GD~I~~ 60 (95)
T 1mfg_A 51 LLQPGDKIIQ 60 (95)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5666666653
No 63
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=21.73 E-value=55 Score=21.82 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=7.7
Q ss_pred CccCCCCEEecCC
Q 039682 59 MTLFEGDVILTGS 71 (107)
Q Consensus 59 ~~L~~GdvI~TGt 71 (107)
..|+.||.|.-|.
T Consensus 153 ~~L~~GDrI~lG~ 165 (184)
T 4egx_A 153 SILRSGNRIIMGK 165 (184)
T ss_dssp EECCTTCEEEETT
T ss_pred EEcCCCCEEEECC
Confidence 3566666666664
No 64
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=21.66 E-value=54 Score=21.07 Aligned_cols=11 Identities=36% Similarity=0.607 Sum_probs=6.1
Q ss_pred ccCCCCEEecC
Q 039682 60 TLFEGDVILTG 70 (107)
Q Consensus 60 ~L~~GdvI~TG 70 (107)
.|+.||+|.-|
T Consensus 124 ~L~~GD~I~~G 134 (154)
T 4ejq_A 124 ILRSGNRIIMG 134 (154)
T ss_dssp ECCTTCEEEET
T ss_pred ECCCCCEEEEC
Confidence 45555555555
No 65
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=21.65 E-value=1.3e+02 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=16.3
Q ss_pred eCCCCCEEEEEEC------ceeEEEEEEEe
Q 039682 77 PVKAGQKTTAGIA------GLLVVRFDNKK 100 (107)
Q Consensus 77 ~l~~Gd~v~~~i~------g~G~l~~~v~~ 100 (107)
++.|||++++++. ++..++..+..
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~v 153 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQV 153 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEEE
Confidence 6899999877654 45556655543
No 66
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=21.61 E-value=96 Score=19.50 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=17.1
Q ss_pred eCCCCCEEEEEEC---ceeEEEEEEEec
Q 039682 77 PVKAGQKTTAGIA---GLLVVRFDNKKR 101 (107)
Q Consensus 77 ~l~~Gd~v~~~i~---g~G~l~~~v~~~ 101 (107)
++.|||+++++++ .-+.+.+++...
T Consensus 77 ~V~PGD~l~l~v~~~~~~~~l~F~~~~~ 104 (129)
T 3esi_A 77 PILPGKTLRLVLIWHAGKQSLTFSYSIL 104 (129)
T ss_dssp CCCTTCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEecCCcEEEEEEeC
Confidence 5899999988765 234566665543
No 67
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=21.33 E-value=37 Score=19.08 Aligned_cols=10 Identities=30% Similarity=0.155 Sum_probs=8.8
Q ss_pred ccCCCCEEec
Q 039682 60 TLFEGDVILT 69 (107)
Q Consensus 60 ~L~~GdvI~T 69 (107)
.|++||+|+.
T Consensus 49 Gl~~GD~I~~ 58 (91)
T 1m5z_A 49 GLKPYDRLLQ 58 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999985
No 68
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=21.10 E-value=54 Score=19.23 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.9
Q ss_pred eeCCCCCEEEEEECce
Q 039682 76 GPVKAGQKTTAGIAGL 91 (107)
Q Consensus 76 ~~l~~Gd~v~~~i~g~ 91 (107)
..+++||+|++++...
T Consensus 60 ~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEe
Confidence 3589999999998643
No 69
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=21.07 E-value=33 Score=23.65 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=22.4
Q ss_pred CccCCCCEEecCCCCCCeeCCCCCEEEEEECce
Q 039682 59 MTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91 (107)
Q Consensus 59 ~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g~ 91 (107)
..|.+|++|...--.....++.||.|.+.+.+=
T Consensus 122 r~l~~Gq~i~~~~L~~~~lV~rG~~V~i~~~~~ 154 (219)
T 3tee_A 122 RDLAPGQPVQLTMIRQAWRVKAGQRVQVIANGE 154 (219)
T ss_dssp SCBCTTCBCBGGGEEECCSBCTTCEEEEEEECS
T ss_pred cccCCCCccCHHHcccccEEcCCCEEEEEEecC
Confidence 556667666655444444589999999888643
No 70
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=21.04 E-value=35 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=21.8
Q ss_pred cCCCCEEecCCCCCCee-CCCCCEEEEE
Q 039682 61 LFEGDVILTGSPQGVGP-VKAGQKTTAG 87 (107)
Q Consensus 61 L~~GdvI~TGt~~g~~~-l~~Gd~v~~~ 87 (107)
+.+--+|.+|++.+..+ +++||.|-.+
T Consensus 69 ~~~~~iI~~G~aG~l~~~~~~GDvvv~~ 96 (233)
T 3eei_A 69 FAADCVINTGSAGGLGKGLKVGDVVIGT 96 (233)
T ss_dssp HCCSEEEECCEEEECSTTCCTTCEEEEE
T ss_pred CCCCEEEEEEEeecCCCCCccccEEEEc
Confidence 46778999999988874 8999988653
No 71
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=20.73 E-value=85 Score=17.68 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=7.3
Q ss_pred CccCCCCEEec
Q 039682 59 MTLFEGDVILT 69 (107)
Q Consensus 59 ~~L~~GdvI~T 69 (107)
..|++||+|+.
T Consensus 45 aGL~~GD~I~~ 55 (93)
T 2dls_A 45 AGVKEGDRIIK 55 (93)
T ss_dssp TTCCSSCEEEE
T ss_pred cCCCCCCEEEE
Confidence 34777777764
No 72
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=20.72 E-value=56 Score=18.93 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=24.2
Q ss_pred ccCCCCEEec--CCCCCCe--------eCCCCCEEEEEECcee-EEEEEEE
Q 039682 60 TLFEGDVILT--GSPQGVG--------PVKAGQKTTAGIAGLL-VVRFDNK 99 (107)
Q Consensus 60 ~L~~GdvI~T--Gt~~g~~--------~l~~Gd~v~~~i~g~G-~l~~~v~ 99 (107)
.|++||+|+. |.+..-. ...+|+.+++++..-| ..++.+.
T Consensus 23 GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~ 73 (100)
T 3i18_A 23 VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIK 73 (100)
T ss_dssp TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence 7999999986 3332110 1468999998886333 2344443
No 73
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=20.69 E-value=63 Score=17.54 Aligned_cols=13 Identities=0% Similarity=-0.028 Sum_probs=11.6
Q ss_pred CCCCCEEEEEECc
Q 039682 78 VKAGQKTTAGIAG 90 (107)
Q Consensus 78 l~~Gd~v~~~i~g 90 (107)
+++||.+++..++
T Consensus 36 i~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 36 IAEKDALEIYVDD 48 (59)
T ss_dssp CCTTCEEEEEEET
T ss_pred CCCCCEEEEEEEC
Confidence 7899999998876
No 74
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=20.45 E-value=1.3e+02 Score=17.81 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CccCCCCEEecCCCCCCeeCCCCCEEEEEECc
Q 039682 59 MTLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90 (107)
Q Consensus 59 ~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g 90 (107)
-+++.||+|+-=.. ..++.||.+-+.+++
T Consensus 31 p~i~~Gd~v~Vd~~---~~~~~Gdivv~~~~~ 59 (109)
T 1kca_A 31 PSFPDGMLILVDPE---QAVEPGDFCIARLGG 59 (109)
T ss_dssp SCCCTTCEEEEETT---SCCCTTCEEEEECST
T ss_pred CeeCCCCEEEEecC---CcCCCCCEEEEEECC
Confidence 47899999987432 147889988888876
No 75
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=20.33 E-value=48 Score=23.62 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=12.9
Q ss_pred CccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 59 MTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 59 ~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
-.|.+||.|.+- |...+++|++|++
T Consensus 332 ~GL~~Gd~VV~~---g~~~l~dG~~V~v 356 (359)
T 3lnn_A 332 SGLSAGDRVVVK---EGVLLNDPDLLEV 356 (359)
T ss_dssp SSCCTTCEEECC---CCTTTCC------
T ss_pred cCCCCCCEEEEc---CCcccCCCCEEEe
Confidence 368888876653 3446888888875
No 76
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.33 E-value=42 Score=19.11 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=8.8
Q ss_pred ccCCCCEEec
Q 039682 60 TLFEGDVILT 69 (107)
Q Consensus 60 ~L~~GdvI~T 69 (107)
.|++||+|+.
T Consensus 47 GL~~GD~I~~ 56 (94)
T 1vb7_A 47 DLRPGDIIVA 56 (94)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 77
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=20.31 E-value=43 Score=18.08 Aligned_cols=9 Identities=56% Similarity=0.951 Sum_probs=8.3
Q ss_pred cCCCCEEec
Q 039682 61 LFEGDVILT 69 (107)
Q Consensus 61 L~~GdvI~T 69 (107)
|++||+|+.
T Consensus 40 l~~GD~I~~ 48 (81)
T 2rcz_A 40 IQEGDVVLK 48 (81)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999986
No 78
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=20.13 E-value=65 Score=18.48 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=26.0
Q ss_pred ccCCCCEEec--CCCCCC-e-------eCCCCCEEEEEECcee-EEEEEEEec
Q 039682 60 TLFEGDVILT--GSPQGV-G-------PVKAGQKTTAGIAGLL-VVRFDNKKR 101 (107)
Q Consensus 60 ~L~~GdvI~T--Gt~~g~-~-------~l~~Gd~v~~~i~g~G-~l~~~v~~~ 101 (107)
.|++||+|+. |.+..- . ..++|+.+++.+..=| ..++.+...
T Consensus 21 GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 73 (94)
T 2kl1_A 21 RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLK 73 (94)
T ss_dssp TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 6999999986 443211 1 1358999999886333 345555443
No 79
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=20.13 E-value=43 Score=18.75 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=8.1
Q ss_pred cCCCCEEec
Q 039682 61 LFEGDVILT 69 (107)
Q Consensus 61 L~~GdvI~T 69 (107)
|++||+|+.
T Consensus 46 L~~GD~I~~ 54 (90)
T 2q9v_A 46 LRSGDELIS 54 (90)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
Done!