RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039682
(107 letters)
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 149 bits (378), Expect = 5e-47
Identities = 52/101 (51%), Positives = 72/101 (71%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK P+S+ +PK +PDP+ +LWLKV+ E+RQ+G T MIF IPY+IS++S I+T
Sbjct: 123 AKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIIT 182
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRFDNKKR 101
L EGD+ILTG+P+GVGPVK + AGI GL+ + F +K
Sbjct: 183 LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKP 223
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 145 bits (369), Expect = 9e-46
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK D PIS +P + D +L L ++ EIRQQG+T+DMI I LIS++S T
Sbjct: 124 AKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFT 183
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L GD++LTG+PQGVGP+++G + G
Sbjct: 184 LRAGDIVLTGTPQGVGPMQSGDMLKIMLNGK 214
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 144 bits (366), Expect = 7e-45
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYN-----FELWLKVDREIRQQGSTKDMIFKIPYLISHI 55
+KG DTF PIS+++ + + F + V+ ++RQ G T M+ + ++ HI
Sbjct: 141 SKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHI 200
Query: 56 SSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL--LVVRFDNKKRRRPG 105
S++++L GD+ILTG+P GVG +K G + + +V + + RPG
Sbjct: 201 STMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPG 252
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 141 bits (359), Expect = 4e-44
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 1 AKGQDTFTPISSVLPKSAV--PDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSI 58
AK D P++ + + + L L+ + + +QQGS+ +M+F I LI+H+S
Sbjct: 120 AKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEH 179
Query: 59 MTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL--LVVRFD 97
+L GDVILTG+P GVGP++ G +A ++ +++ D
Sbjct: 180 FSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCD 220
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 129 bits (328), Expect = 2e-39
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AKG+DTF P+ L V DP + L V+ E+RQ+G T M++ + L+ IS MT
Sbjct: 145 AKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMT 204
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L DV+LTG+P+G+ V+ G I GL
Sbjct: 205 LEPYDVLLTGTPKGISQVRPGDVMRLEIEGL 235
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 129 bits (327), Expect = 1e-37
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM 59
K +D TP+ S + PK A+PDP+N L V+ E+RQQG+T D+IF +P+LI+++S M
Sbjct: 324 VKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFM 383
Query: 60 TLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
TL GD+I TG+P+G+ V G + + G+
Sbjct: 384 TLNPGDMIATGTPKGLSDVVPGDEVVVEVEGV 415
Score = 123 bits (311), Expect = 3e-35
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK +D F PI A+ + N ++ +++ +T D+ L+S +S T
Sbjct: 109 AKCRDGFCPIG---ETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFAT 165
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRFDN 98
L GD IL G+PQ ++ G + G +
Sbjct: 166 LNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPV 203
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 123 bits (312), Expect = 1e-36
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK D F P+ L +P + + V+ +RQ+G T MIF + ++S+IS+ MT
Sbjct: 161 AKSADKFLPLGPWLE--TDLNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMT 218
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L DV+LTG+P+GVG ++ G + + G+
Sbjct: 219 LEPLDVVLTGTPEGVGALRPGDRLEVAVEGV 249
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 121 bits (307), Expect = 7e-36
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AKG DTF P+ + DP + E+ +V+ ++RQ+ T ++ + ++ +S++MT
Sbjct: 165 AKGHDTFCPLGPWIVTD--LDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMT 222
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L GDVILTG+P+GVGP+ G + I G+
Sbjct: 223 LLPGDVILTGTPEGVGPIVDGDTVSVTIEGI 253
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 115 bits (291), Expect = 6e-33
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 2 KGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
KG TF P L + F+ L+++ E+RQ GST DM ++ +S+ +
Sbjct: 214 KGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVSATIA 273
Query: 61 LFEGDVILTGSPQGVG-----PV--KAGQKTTAGIAGL 91
L GD+ILTG+P G G P + G A A L
Sbjct: 274 LRAGDIILTGTPGGCGFQFDPPRYLRPGDVIEAHSAKL 311
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 108 bits (272), Expect = 1e-30
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIR----QQGSTKDMIFKIPYLISHI 55
+K V+ + +PY+ ++ LK+ RE R +T M KI I ++
Sbjct: 181 SKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYL 240
Query: 56 SSIMTLFEGDVILTGSPQGVG---PVKAGQKTTAGIAGL 91
+ +G ++ TG+ G +K I+ +
Sbjct: 241 IRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNI 279
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 74.2 bits (182), Expect = 3e-17
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 1 AKGQDTFTPISSVLP-KSAVPDPYNF-----ELWLKVDREIRQQGST-KDMIFKIPYLIS 53
+K F+P V + + ++ L + ++ E + + DM F P LI
Sbjct: 211 SKPSSAFSP---VAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIV 267
Query: 54 HISSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90
H + L G +I +G+ G+ + G AG
Sbjct: 268 HAARTRPLSAGTIIGSGTVSNKLEGGPGRPVSEGGAG 304
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 59.0 bits (142), Expect = 9e-12
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 1 AKGQDTFTPISSVL---------------------PKSAVPDPYNFELWLKV-------- 31
G+ T IS + P PY F++ L V
Sbjct: 252 FLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMS 311
Query: 32 DREIRQQGSTKDMIFKIPYLISHISS-IMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90
+ + K M + + ++H S L GD++ +G+ G P G G
Sbjct: 312 QAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKG 371
Query: 91 LLVVRFDNKKRRRP 104
+ + R
Sbjct: 372 TKAIDVGQGQTRTF 385
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic
hydrocarbons catabolism; 2.80A {Escherichia coli} PDB:
1sv6_A
Length = 270
Score = 38.6 bits (90), Expect = 1e-04
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 21 DPYNFELWLKVDREIRQQGSTK----DMIFKIPYLISHISSI-MTLFEGDVILTGSPQGV 75
D N + + + E G + +L ++S+ L GD+ILTG+ +
Sbjct: 178 DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPM 237
Query: 76 GPVKAGQKTTAGIAGL--LVVRF 96
V AG + A I G+ + F
Sbjct: 238 VAVNAGDRFEAHIEGIGSVAATF 260
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia
coli} PDB: 2eb5_A 2eb6_A
Length = 267
Score = 38.2 bits (89), Expect = 1e-04
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 21 DPYNFELWLKVDREIRQQGSTK----DMIFKIPYLISHISSI-MTLFEGDVILTGSPQGV 75
D + + I + G + +L + ++ + L G +IL GS
Sbjct: 184 DLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRP 243
Query: 76 GPVKAGQKTTAGIAGL--LVVRF 96
P + G + + RF
Sbjct: 244 VPARKGDTFHVDYGNMGSISCRF 266
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain,
structural protein; 3.00A {Mus musculus} SCOP:
a.118.8.7
Length = 530
Score = 27.1 bits (59), Expect = 1.3
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 21 DPYNFELWLKVDREIRQQ 38
+PY+ + W + RE + Q
Sbjct: 9 NPYDLDAWSILIREAQNQ 26
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.3
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 39/124 (31%)
Query: 1 AKGQDTFTPISSVLPKS---------AVPDP------YNFELWLKVDREIRQQGSTKDMI 45
+ + + P +S+ P VP P E +V + + S
Sbjct: 308 VRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSISNLTQE---QVQDYVNKTNSHLPAG 363
Query: 46 FKIPYLISHISSIMTLFEGD--VILTGSPQG-VGPVKAGQKTTAGIAGLLVVRFDNKKRR 102
++ IS L G ++++G PQ G +K A +GL + R
Sbjct: 364 KQV-----EIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGL-------DQSR 406
Query: 103 RPGS 106
P S
Sbjct: 407 IPFS 410
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 26.5 bits (57), Expect = 2.2
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 21 DPYNFELWLKVDREIRQQGSTKD 43
P + L++K+ + K
Sbjct: 62 QPTDIFLYVKLLKHHVSLKQWKQ 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,603,865
Number of extensions: 84221
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 21
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)