RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 039682
(107 letters)
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 105 bits (264), Expect = 1e-30
Identities = 52/100 (52%), Positives = 72/100 (72%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK P+S+ +PK +PDP+ +LWLKV+ E+RQ+G T MIF IPY+IS++S I+T
Sbjct: 115 AKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIIT 174
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRFDNKK 100
L EGD+ILTG+P+GVGPVK + AGI GL+ + F +K
Sbjct: 175 LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEK 214
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 86.5 bits (213), Expect = 4e-23
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 15 PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQG 74
PK A+PDP+N L V+ E+RQQG+T D+IF +P+LI+++S MTL GD+I TG+P+G
Sbjct: 126 PKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKG 185
Query: 75 VGPVKAGQKTTAGIAGL 91
+ V G + + G+
Sbjct: 186 LSDVVPGDEVVVEVEGV 202
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 86.1 bits (212), Expect = 2e-22
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 1 AKGQDTFTPISSVLPKSAVPD-----PYNFELWLKVDREIRQQGSTKDMIFKIPYLISHI 55
+KG DTF PIS+++ + F + V+ ++RQ G T M+ + ++ HI
Sbjct: 140 SKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHI 199
Query: 56 SSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL--LVVRFDNKKRRRPG 105
S++++L GD+ILTG+P GVG +K G + + +V + + RPG
Sbjct: 200 STMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPG 251
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 79.1 bits (194), Expect = 4e-20
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 4 QDTFTPISSVLPKSA-VPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLF 62
D P+S +P + DP N L L V+ E RQQG+T DMI KI LI+++S TL
Sbjct: 125 FDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLK 184
Query: 63 EGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
GDV+LTG+P GVGP+++G + T G
Sbjct: 185 AGDVVLTGTPDGVGPLQSGDELTVTFDGH 213
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 66.9 bits (162), Expect = 1e-15
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 20 PDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79
+ N ++ +++ +T D+ L+S +S TL GD IL G+PQ ++
Sbjct: 125 SNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQ 184
Query: 80 AGQKTTAGIAGLLVVR 95
G + G +
Sbjct: 185 PGDRVRVLAEGFPPLE 200
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 65.1 bits (158), Expect = 1e-14
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 30/133 (22%)
Query: 1 AKGQDTFTPISSVLP-----------------------KSAVPDPYNFELWL------KV 31
G+ T IS + + P ++ L +
Sbjct: 132 FLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMS 191
Query: 32 DREIRQQGSTKDMIFKIPYLISHISS-IMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90
+ + K M + + ++H S L GD++ +G+ G P G G
Sbjct: 192 QAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKG 251
Query: 91 LLVVRFDNKKRRR 103
+ + R
Sbjct: 252 TKAIDVGQGQTRT 264
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 62.7 bits (151), Expect = 1e-13
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 3 GQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM--- 59
I + A D N + + + E G + + ++ M
Sbjct: 159 ASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASL 218
Query: 60 --TLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL--LVVRF 96
L GD+ILTG+ + V AG + A I G+ + F
Sbjct: 219 GEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATF 259
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 25.3 bits (54), Expect = 1.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 4 QDTFTPISSVLPKSAVPDPYNFE 26
D +++V+ +S D +E
Sbjct: 13 ADLAAELAAVVTESVDEDYLLYE 35
>d2ghvc1 d.318.1.1 (C:320-502) Spike protein S1 {SARS coronavirus
[TaxId: 227859]}
Length = 183
Score = 24.1 bits (52), Expect = 4.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 9 PISSVLPKSAVPDPYNFE 26
P V + P Y +E
Sbjct: 5 PFGEVFNATKFPSVYAWE 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,394
Number of extensions: 15159
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 11
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)