BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039683
(983 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 1493 bits (3866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/876 (80%), Positives = 788/876 (89%)
Query: 108 TTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGK 167
TT+KRVF FGKG+SEGNK MK LLGGKGANLAEM++IGLSVPPG T+STEACQ+YQ G
Sbjct: 1 TTKKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGC 60
Query: 168 KXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEV 227
MGA LGDP +PLLLSVRSGAA+SMPGMMDTVLNLGLNDEV
Sbjct: 61 ALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEV 120
Query: 228 AAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDL 287
AAGLA K G RFAYDS+RRFLDMFG+VVM IP SLFEEKLEHMKE+KG+K DTDL+ASDL
Sbjct: 121 AAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEHMKESKGLKNDTDLTASDL 180
Query: 288 KELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAV 347
KELV QYK VY+ KGE FPSDPKKQL+L+V AVF+SW+SPRA KYRSINQITGL+GTAV
Sbjct: 181 KELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAV 240
Query: 348 NIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSY 407
N+QCMVFGNMGNTSGTGVLFTRNP+TGE KLYGEFL+NAQGEDVVAGIRTPEDL+ MK+
Sbjct: 241 NVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNL 300
Query: 408 MPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEG 467
MP+AY ELVENC ILE HYK+M DIEFTVQENRLWMLQCR+GKRTGK+AVKIAVDMVNEG
Sbjct: 301 MPQAYDELVENCNILESHYKEMQDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEG 360
Query: 468 LVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPASPGAAVGQVVFSAEDAEAW 527
LV+ R+A+KMVEP HLDQLLHPQFE+PSAYKD+V+ATGLPASPGAAVGQVVF+AEDAEAW
Sbjct: 361 LVEPRSAIKMVEPGHLDQLLHPQFENPSAYKDQVIATGLPASPGAAVGQVVFTAEDAEAW 420
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H+QGK+AILVR ETSPED+GGMHAA GILT RGGMTSHAAVVARGWGKCCVSGCS IRVN
Sbjct: 421 HSQGKAAILVRAETSPEDVGGMHAAVGILTERGGMTSHAAVVARGWGKCCVSGCSGIRVN 480
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
D EK + +G V+ EG+WLSLNGSTGEVILGKQPL+PPA+SGDL FM+W D++R+LKV+
Sbjct: 481 DAEKLVTIGGHVLREGEWLSLNGSTGEVILGKQPLSPPALSGDLGTFMAWVDDVRKLKVL 540
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVR+MIMA T E R+ ALD LLP
Sbjct: 541 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDRLLP 600
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEG++E IV+EL ETG ++++ +RIEK
Sbjct: 601 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEK 660
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELG 827
LSEVNPMLGFRGCRLGISYPELTEMQ RAIF+AA++M+N +VFPEIMVPLVGTPQELG
Sbjct: 661 LSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELG 720
Query: 828 HQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTF 887
HQ++LIR VA KVF+ +G ++ YKVGTMIEIPRAALVADEIA++AEFFSFGTNDLTQMTF
Sbjct: 721 HQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTF 780
Query: 888 GYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHG 947
GYSRDDVGKF+PVYL++GILQ DPFEVLDQ+GVG+L+K ATERGR ARP+LKVGICGEHG
Sbjct: 781 GYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHG 840
Query: 948 GEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 983
GEPSSVAFFA+AGLDYVSCSPFRVPIARLAAAQV V
Sbjct: 841 GEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV 876
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/867 (55%), Positives = 624/867 (71%), Gaps = 12/867 (1%)
Query: 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXX 170
K V+ F EGN M++LLGGKG NLAEM+ +G+ +P G T++TEAC EY +GK+
Sbjct: 2 KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQIT 57
Query: 171 XXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAG 230
G GD PLL+SVRSGA SMPGMMDT+LNLGLND G
Sbjct: 58 QEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEG 117
Query: 231 LAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKE 289
A+K G RFAYDSYRRF+ M+ DVVM +P S FE+ ++ MKE KGV DTDL+A DLKE
Sbjct: 118 FAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKE 177
Query: 290 LVKQYKNVYIET-KGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348
L +++K VY E GEEFP +PK QL +VKAVF SWD+PRAI YR +N I G GTAVN
Sbjct: 178 LAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVN 237
Query: 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYM 408
+Q MVFGN G TSGTGV FTRNPSTGE +YGE+LINAQGEDVVAG+RTP+ + +++ M
Sbjct: 238 VQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDM 297
Query: 409 PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGL 468
P+ YK+ ++ LE+H++DM D+EFT++E +L+ LQ R+GKRT AA++IA D+V+EG+
Sbjct: 298 PDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGM 357
Query: 469 VDTRAAVKMVEPQHLDQLLHPQFEDPSAYK-DKVVATGLPASPGAAVGQVVFSAEDAEAW 527
+ AV +E + LDQLLHP F +P+A K +V+ + LPASPGAA G+V F+A++A+A
Sbjct: 358 ITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAA 416
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H +G+ ILVR ETSPEDI GMHAA GILT RGGMTSHAAVVARG G CCVSGC +I++N
Sbjct: 417 HEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKIN 476
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
+ K+ +G +EGD++SL+GSTG++ G ++SG E M WAD+ R LKV
Sbjct: 477 EEAKTFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVR 536
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
NADTP+D L A GA+GIGLCRTEHMFF +D RI +RKMI++ + E R+ AL+ L+P
Sbjct: 537 TNADTPEDTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNELIP 595
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
+Q+ DF+ +++A++G P+T+R LDPPLHEF+P + EQ EL G++ EV +++++
Sbjct: 596 FQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQA--ELAKNMGLTLAEVKAKVDE 653
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHR-FKVFPEIMVPLVGTPQEL 826
L E NPM+G RGCRL ++YPE+ +MQ RA+ +AA+ + + PEIM+PLVG +EL
Sbjct: 654 LHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKEL 713
Query: 827 GHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMT 886
++ VA +V E GS + Y +GTMIEIPRAAL AD IA+EAEFFSFGTNDLTQMT
Sbjct: 714 KFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMT 773
Query: 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946
FG+SRDD GKFL Y I +SDPF LDQ GVGQL+++A ++GR RP LK GICGEH
Sbjct: 774 FGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEH 833
Query: 947 GGEPSSVAFFAEAGLDYVSCSPFRVPI 973
GG+PSSV F + GL+YVSCSPFRVPI
Sbjct: 834 GGDPSSVEFCHKVGLNYVSCSPFRVPI 860
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/867 (55%), Positives = 623/867 (71%), Gaps = 12/867 (1%)
Query: 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXX 170
K V+ F EGN M++LLGGKG NLAEM+ +G+ +P G T++TEAC EY +GK+
Sbjct: 2 KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQIT 57
Query: 171 XXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAG 230
G GD PLL+SVRSGA SMPGMMDT+LNLGLND G
Sbjct: 58 QEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEG 117
Query: 231 LAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKE 289
A+K G RFAYDSYRRF+ M+ DVVM +P S FE+ ++ MKE KGV DTDL+A DLKE
Sbjct: 118 FAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKE 177
Query: 290 LVKQYKNVYIET-KGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348
L +++K VY E GEEFP +PK QL +VKAVF SWD+PRAI YR +N I G GTAVN
Sbjct: 178 LAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVN 237
Query: 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYM 408
+Q MVFGN G TSGTGV FTRNPSTGE +YGE+LINAQGEDVVAG+RTP+ + +++ M
Sbjct: 238 VQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDM 297
Query: 409 PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGL 468
P+ YK+ ++ LE+H++DM D+EFT++E +L+ LQ R+GKRT AA++IA D+V+EG+
Sbjct: 298 PDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGM 357
Query: 469 VDTRAAVKMVEPQHLDQLLHPQFEDPSAYK-DKVVATGLPASPGAAVGQVVFSAEDAEAW 527
+ AV +E + LDQLLHP F +P+A K +V+ + LPASPGAA G+V F+A++A+A
Sbjct: 358 ITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAA 416
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H +G+ ILVR ETSPEDI GMHAA GILT RGGM SHAAVVARG G CCVSGC +I++N
Sbjct: 417 HEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMASHAAVVARGMGTCCVSGCGEIKIN 476
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
+ K+ +G +EGD++SL+GSTG++ G ++SG E M WAD+ R LKV
Sbjct: 477 EEAKTFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVR 536
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
NADTP+D L A GA+GIGLCRTEHMFF +D RI +RKMI++ + E R+ AL+ L+P
Sbjct: 537 TNADTPEDTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNELIP 595
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
+Q+ DF+ +++A++G P+T+R LDPPLHEF+P + EQ EL G++ EV +++++
Sbjct: 596 FQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQA--ELAKNMGLTLAEVKAKVDE 653
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHR-FKVFPEIMVPLVGTPQEL 826
L E NPM+G RGCRL ++YPE+ +MQ RA+ +AA+ + + PEIM+PLVG +EL
Sbjct: 654 LHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKEL 713
Query: 827 GHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMT 886
++ VA +V E GS + Y +GTMIEIPRAAL AD IA+EAEFFSFGTNDLTQMT
Sbjct: 714 KFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMT 773
Query: 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946
FG+SRDD GKFL Y I +SDPF LDQ GVGQL+++A ++GR RP LK GICGEH
Sbjct: 774 FGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEH 833
Query: 947 GGEPSSVAFFAEAGLDYVSCSPFRVPI 973
GG+PSSV F + GL+YVSCSPFRVPI
Sbjct: 834 GGDPSSVEFCHKVGLNYVSCSPFRVPI 860
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/867 (55%), Positives = 623/867 (71%), Gaps = 12/867 (1%)
Query: 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXX 170
K V+ F EGN M++LLGGKG NLAEM+ +G+ +P G T++TEAC EY +GK+
Sbjct: 3 KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQIT 58
Query: 171 XXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAG 230
G GD PLL+SVRS A SMPGMMDT+LNLGLND G
Sbjct: 59 QEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSAARASMPGMMDTILNLGLNDVAVEG 118
Query: 231 LAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKE 289
A+K G RFAYDSYRRF+ M+ DVVM +P S FE+ ++ MKE KGV DTDL+A DLKE
Sbjct: 119 FAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKE 178
Query: 290 LVKQYKNVYIET-KGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348
L +++K VY E GEEFP +PK QL +VKAVF SWD+PRAI YR +N I G GTAVN
Sbjct: 179 LAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVN 238
Query: 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYM 408
+Q MVFGN G TSGTGV FTRNPSTGE +YGE+LINAQGEDVVAG+RTP+ + +++ M
Sbjct: 239 VQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDM 298
Query: 409 PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGL 468
P+ YK+ ++ LE+H++DM D+EFT++E +L+ LQ R+GKRT AA++IA D+V+EG+
Sbjct: 299 PDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGM 358
Query: 469 VDTRAAVKMVEPQHLDQLLHPQFEDPSAYK-DKVVATGLPASPGAAVGQVVFSAEDAEAW 527
+ AV +E + LDQLLHP F +P+A K +V+ + LPASPGAA G+V F+A++A+A
Sbjct: 359 ITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAA 417
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H +G+ ILVR ETSPEDI GMHAA GILT RGGMTSHAAVVARG G CCVSGC +I++N
Sbjct: 418 HEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKIN 477
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
+ K+ +G +EGD++SL+GSTG++ G ++SG E M WAD+ R LKV
Sbjct: 478 EEAKTFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVR 537
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
NADTP+D L A GA+GIGLCRTEHMFF +D RI +RKMI++ + E R+ AL+ L+P
Sbjct: 538 TNADTPEDTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNELIP 596
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
+Q+ DF+ +++A++G P+T+R LDPPLHEF+P + EQ EL G++ EV +++++
Sbjct: 597 FQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQA--ELAKNMGLTLAEVKAKVDE 654
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHR-FKVFPEIMVPLVGTPQEL 826
L E NPM+G RGCRL ++YPE+ +MQ RA+ +AA+ + + PEIM+PLVG +EL
Sbjct: 655 LHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKEL 714
Query: 827 GHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMT 886
++ VA +V E GS + Y +GTMIEIPRAAL AD IA+EAEFFSFGTNDLTQMT
Sbjct: 715 KFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMT 774
Query: 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946
FG+SRDD GKFL Y I +SDPF LDQ GVGQL+++A ++GR RP LK GICGEH
Sbjct: 775 FGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEH 834
Query: 947 GGEPSSVAFFAEAGLDYVSCSPFRVPI 973
GG+PSSV F + GL+YVSCSPFRVPI
Sbjct: 835 GGDPSSVEFCHKVGLNYVSCSPFRVPI 861
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/867 (55%), Positives = 623/867 (71%), Gaps = 12/867 (1%)
Query: 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXX 170
K V+ F EGN M++LLGG G NLAEM+ +G+ +P G T++TEAC EY +GK+
Sbjct: 2 KWVYKF----EEGNASMRNLLGGAGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQIT 57
Query: 171 XXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAG 230
G GD PLL+SVRSGA SMPGMMDT+LNLGLND G
Sbjct: 58 QEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEG 117
Query: 231 LAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKE 289
A+K G RFAYDSYRRF+ M+ DVVM +P S FE+ ++ MKE KGV DTDL+A DLKE
Sbjct: 118 FAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKE 177
Query: 290 LVKQYKNVYIET-KGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348
L +++K VY E GEEFP +PK QL +VKAVF SWD+PRAI YR +N I G GTAVN
Sbjct: 178 LAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVN 237
Query: 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYM 408
+Q MVFGN G TSGTGV FTRNPSTGE +YGE+LINAQGEDVVAG+RTP+ + +++ M
Sbjct: 238 VQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDM 297
Query: 409 PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGL 468
P+ YK+ ++ LE+H++DM D+EFT++E +L+ LQ R+GKRT AA++IA D+V+EG+
Sbjct: 298 PDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGM 357
Query: 469 VDTRAAVKMVEPQHLDQLLHPQFEDPSAYK-DKVVATGLPASPGAAVGQVVFSAEDAEAW 527
+ AV +E + LDQLLHP F +P+A K +V+ + LPASPGAA G+V F+A++A+A
Sbjct: 358 ITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAA 416
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H +G+ ILVR ETSPEDI GMHAA GILT RGGMTSHAAVVARG G CCVSGC +I++N
Sbjct: 417 HEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKIN 476
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
+ K+ +G +EGD++SL+GSTG++ G ++SG E M WAD+ R LKV
Sbjct: 477 EEAKTFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVR 536
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
NADTP+D L A GA+GIGLCRTEHMFF +D RI +RKMI++ + E R+ AL+ L+P
Sbjct: 537 TNADTPEDTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNELIP 595
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
+Q+ DF+ +++A++G P+T+R LDPPLHEF+P + EQ EL G++ EV +++++
Sbjct: 596 FQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQA--ELAKNMGLTLAEVKAKVDE 653
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHR-FKVFPEIMVPLVGTPQEL 826
L E NPM+G RGCRL ++YPE+ +MQ RA+ +AA+ + + PEIM+PLVG +EL
Sbjct: 654 LHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKEL 713
Query: 827 GHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMT 886
++ VA +V E GS + Y +GTMIEIPRAAL AD IA+EAEFFSFGTNDLTQMT
Sbjct: 714 KFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMT 773
Query: 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946
FG+SRDD GKFL Y I +SDPF LDQ GVGQL+++A ++GR RP LK GICGEH
Sbjct: 774 FGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEH 833
Query: 947 GGEPSSVAFFAEAGLDYVSCSPFRVPI 973
GG+PSSV F + GL+YVSCSPFRVPI
Sbjct: 834 GGDPSSVEFCHKVGLNYVSCSPFRVPI 860
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/867 (55%), Positives = 622/867 (71%), Gaps = 12/867 (1%)
Query: 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXX 170
K V+ F EGN M++LLGGKG NLAEM+ +G+ +P G T++TEAC EY +GK+
Sbjct: 2 KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQIT 57
Query: 171 XXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAG 230
G GD PLL+SVRS A SMPGMMDT+LNLGLND G
Sbjct: 58 QEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSAARASMPGMMDTILNLGLNDVAVEG 117
Query: 231 LAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKE 289
A+K G RFAYDSYRRF+ M+ DVVM +P S FE+ ++ MKE KGV DTDL+A DLKE
Sbjct: 118 FAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKE 177
Query: 290 LVKQYKNVYIET-KGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348
L +++K VY E GEEFP +PK QL +VKAVF SWD+PRAI YR +N I G GTAVN
Sbjct: 178 LAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVN 237
Query: 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYM 408
+Q MVFGN G TSGTGV FTRNPSTGE +YGE+LINAQGEDVVAG+RTP+ + +++ M
Sbjct: 238 VQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDM 297
Query: 409 PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGL 468
P+ YK+ ++ LE+H++DM D+EFT++E +L+ LQ +GKRT AA++IA D+V+EG+
Sbjct: 298 PDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTANGKRTAPAALQIACDLVDEGM 357
Query: 469 VDTRAAVKMVEPQHLDQLLHPQFEDPSAYK-DKVVATGLPASPGAAVGQVVFSAEDAEAW 527
+ AV +E + LDQLLHP F +P+A K +V+ + LPASPGAA G+V F+A++A+A
Sbjct: 358 ITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAA 416
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H +G+ ILVR ETSPEDI GMHAA GILT RGGMTSHAAVVARG G CCVSGC +I++N
Sbjct: 417 HEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKIN 476
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
+ K+ +G +EGD++SL+GSTG++ G ++SG E M WAD+ R LKV
Sbjct: 477 EEAKTFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVR 536
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
NADTP+D L A GA+GIGLCRTEHMFF +D RI +RKMI++ + E R+ AL+ L+P
Sbjct: 537 TNADTPEDTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNELIP 595
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
+Q+ DF+ +++A++G P+T+R LDPPLHEF+P + EQ EL G++ EV +++++
Sbjct: 596 FQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQA--ELAKNMGLTLAEVKAKVDE 653
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHR-FKVFPEIMVPLVGTPQEL 826
L E NPM+G RGCRL ++YPE+ +MQ RA+ +AA+ + + PEIM+PLVG +EL
Sbjct: 654 LHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKEL 713
Query: 827 GHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMT 886
++ VA +V E GS + Y +GTMIEIPRAAL AD IA+EAEFFSFGTNDLTQMT
Sbjct: 714 KFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMT 773
Query: 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946
FG+SRDD GKFL Y I +SDPF LDQ GVGQL+++A ++GR RP LK GICGEH
Sbjct: 774 FGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEH 833
Query: 947 GGEPSSVAFFAEAGLDYVSCSPFRVPI 973
GG+PSSV F + GL+YVSCSPFRVPI
Sbjct: 834 GGDPSSVEFCHKVGLNYVSCSPFRVPI 860
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/867 (55%), Positives = 621/867 (71%), Gaps = 12/867 (1%)
Query: 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXX 170
K V+ F EGN M++LLGGKG NLAEM+ +G+ +P G T++TEAC EY +GK+
Sbjct: 3 KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQIT 58
Query: 171 XXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAG 230
G GD PLL+SVRSGA SMPGMMDT+LNLGLND G
Sbjct: 59 QEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEG 118
Query: 231 LAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKE 289
A+K G RFAYDSYRRF+ M+ DVVM +P S FE+ ++ MKE KGV DTDL+A DLKE
Sbjct: 119 FAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKE 178
Query: 290 LVKQYKNVYIET-KGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348
L +++K VY E GEEFP +PK QL +VKAVF SWD+P AI YR +N I G GTAVN
Sbjct: 179 LAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPEAIVYRRMNDIPGDWGTAVN 238
Query: 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYM 408
+Q MVFGN G TSGTGV FTRNP TGE +YG +LINAQGEDVVAG+RTP+ + +++ M
Sbjct: 239 VQTMVFGNKGETSGTGVAFTRNPDTGEKGIYGRYLINAQGEDVVAGVRTPQPITQLENDM 298
Query: 409 PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGL 468
P+ YK+ ++ LE+H++DM D+EFT++E +L+ LQ R+GKRT AA++IA D+V+EG+
Sbjct: 299 PDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGM 358
Query: 469 VDTRAAVKMVEPQHLDQLLHPQFEDPSAYK-DKVVATGLPASPGAAVGQVVFSAEDAEAW 527
+ AV +E + LDQLLHP F +P+A K +V+ + LPASPGAA G+V F+A++A+A
Sbjct: 359 ITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGSALPASPGAAAGKVYFTADEAKAA 417
Query: 528 HAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587
H +G+ ILVR ETSPEDI GMHAA GILT RGGMTSHAAVVARG G CCVSGC +I++N
Sbjct: 418 HEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKIN 477
Query: 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
+ K+ +G +EGD++SL+GSTG++ G ++SG E M WAD+ R LKV
Sbjct: 478 EEAKTFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVR 537
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
NADTP+D L A GA+GIGLCRTEHMFF +D RI +RKMI++ + E R+ AL+ L+P
Sbjct: 538 TNADTPEDTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNELIP 596
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
+Q+ DF+ +++A++G P+T+R LDPPLHEF+P + EQ EL G++ EV +++++
Sbjct: 597 FQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQA--ELAKNMGLTLAEVKAKVDE 654
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHR-FKVFPEIMVPLVGTPQEL 826
L E NPM+G RGCRL ++YPE+ +MQ RA+ +AA+ + + PEIM+PLVG +EL
Sbjct: 655 LHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKEL 714
Query: 827 GHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMT 886
++ VA +V E GS + Y +GTMIEIPRAAL AD IA+EAEFFSFGTNDLTQMT
Sbjct: 715 KFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMT 774
Query: 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946
FG+SRDD GKFL Y I +SDPF LDQ GVGQL+++A ++GR RP LK GICGEH
Sbjct: 775 FGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEH 834
Query: 947 GGEPSSVAFFAEAGLDYVSCSPFRVPI 973
GG+PSSV F + GL+YVSCSPFRVPI
Sbjct: 835 GGDPSSVEFCHKVGLNYVSCSPFRVPI 861
>pdb|2X0S|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/905 (54%), Positives = 613/905 (67%), Gaps = 39/905 (4%)
Query: 108 TTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGK 167
+K V+ FG G ++GNK MK LLGGKGANLAEM +G+ VPPG TI+TEAC+ YQ+ +
Sbjct: 2 VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQET-E 60
Query: 168 KXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEV 227
MGA GDP+ PLL SVRSGAA SMPGMMDTVLNLGLN
Sbjct: 61 TIPQEVADQVRENVSRVEKEMGAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVT 120
Query: 228 AAGLAEKCGG--RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSAS 285
+ RF YDSYRRF+ M+ D+VM + FEE L MKE +G K DTDL+AS
Sbjct: 121 VDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEALSRMKERRGTKFDTDLTAS 180
Query: 286 DLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGT 345
DLKEL Y ++ G FP DP QL ++KAVF SW +PRA YR +N ITGL GT
Sbjct: 181 DLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGT 240
Query: 346 AVNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLN--- 402
AVN+Q MVFGN+ + S TGV F+R+PSTGEN +GE+L+NAQGEDVVAGIRTP+ +N
Sbjct: 241 AVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSL 300
Query: 403 --------------------TMKSYMPEAYKELVENCEILERHYKDMMDIEFTVQENRLW 442
+M+ MPE Y+ L + + LE HY+DM D+EFTVQ+ RLW
Sbjct: 301 SLRWAKAHGVGEEERRKRYPSMEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLW 360
Query: 443 MLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVV 502
+LQCR+GKRT AAV+IA+DMVNEGL+ AV ++P +D L+HP E + +K +
Sbjct: 361 LLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQVDHLMHPNLEPGAEKANKPI 420
Query: 503 ATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGM 562
GL ASPGAAVGQVVF AE A+ W +GK I+VR ETSPED+ GM AA GILTARGGM
Sbjct: 421 GRGLAASPGAAVGQVVFDAESAKEWSGRGKKVIMVRLETSPEDLAGMDAACGILTARGGM 480
Query: 563 TSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPL 622
TSHAAVVARG GKCCVSGC D+ + KS + V EGD+++++GS G + GK L
Sbjct: 481 TSHAAVVARGMGKCCVSGCGDMVIRG--KSFKLNGSVFREGDYITIDGSKGLIYAGKLKL 538
Query: 623 APPAMSGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDER 682
P + G + + W E++RL V NADTP DA AR+ GA+G+GLCRTEHMFF R
Sbjct: 539 RSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGS-R 597
Query: 683 IKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGD 742
I +R+MI+A + RKAALD LLP QR+DF GI RAM GLPVTIRLLDPPLHEF+P
Sbjct: 598 INFIREMILADSASGRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDA 657
Query: 743 LEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAV 802
Q EL + GM ++V +R+ L E+NPMLG RGCRLGI+YPE+ MQVRAI +AA+
Sbjct: 658 AAQF--ELAQKLGMPAEKVRNRVNALHELNPMLGHRGCRLGITYPEIYNMQVRAIIEAAI 715
Query: 803 SMSNHRFKVFPEIMVPLVGTPQELGHQISLIR----NVATKVFSEMGSSLDYKVGTMIEI 858
++S V PEIMVPLVG +EL SLIR A V ++ G + Y VGTMIE+
Sbjct: 716 AVSEEGSSVIPEIMVPLVGKKEEL----SLIREEVVKTAEAVITKSGKRVHYTVGTMIEV 771
Query: 859 PRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQK 918
PRAA+ AD IA++A+FFSFGTNDLTQM G+SRDD G FL Y + GI DPF+ +DQ+
Sbjct: 772 PRAAVTADSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQE 831
Query: 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAA 978
G+G+L++IA +GR +P LK+GICGEHGG+P+++ F + GLDYVSCSPFRVP+A +AA
Sbjct: 832 GIGELVRIAVTKGRRVKPMLKMGICGEHGGDPATIGFCHKVGLDYVSCSPFRVPVAIVAA 891
Query: 979 AQVAV 983
A ++
Sbjct: 892 AHASI 896
>pdb|2FM4|A Chain A, Nmr Structure Of The Phosphoryl Carrier Domain Of Pyruvate
Phosphate Dikinase
Length = 128
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 94/119 (78%)
Query: 500 KVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTAR 559
+V+ + LPASPGAA G+V F+A++A+A H +G+ ILVR ETSPEDI GMHAA GILT R
Sbjct: 7 EVIGSALPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVR 66
Query: 560 GGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILG 618
GGMTSHAAVVARG G CCVSGC +I++N+ K+ +G +EGD++SL+GSTG++ G
Sbjct: 67 GGMTSHAAVVARGMGTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISLDGSTGKIYKG 125
>pdb|2HRO|A Chain A, Structure Of The Full-Lenght Enzyme I Of The Pts System
From Staphylococcus Carnosus
Length = 573
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/462 (26%), Positives = 194/462 (41%), Gaps = 99/462 (21%)
Query: 532 KSAILVRTETSPEDIGGMHA--AAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDN 589
+S +++ + +P D ++ G +T GG TSH+A+++R V G I
Sbjct: 155 ESVVIIGNDLTPSDTAQLNKEYVQGFVTNIGGRTSHSAIMSRSLEIPAVVGTKSITEE-- 212
Query: 590 EKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLK---- 645
+ GD + ++G TG+V++ E F E+++L+
Sbjct: 213 ----------VEAGDTIVVDGMTGDVLINPSDEVIAEYQEKRENFFKDKQELQKLRDAES 262
Query: 646 ---------VMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPE 696
+ AN TP+D NGA+GIGL RTE ++ D+ M E
Sbjct: 263 VTADGHHVELAANIGTPNDLPGVIENGAEGIGLYRTEFLYMGRDQ---------MPTEEE 313
Query: 697 QRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGM 756
Q +A ++ + AM G V +R LD + LP DL +
Sbjct: 314 QFEA------------YKAVLEAMKGKRVVVRTLDIGGDKELPYLDLPE----------- 350
Query: 757 SEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIM 816
E+NP LG+R RL + PE+ Q+RA+ +A+V + IM
Sbjct: 351 -------------EMNPFLGYRAIRLCLDQPEIFRPQLRALLRASVFGKLN-------IM 390
Query: 817 VPLVGTPQELGHQISLIRNVATKVFSE-MGSSLDYKVGTMIEIPRAALVADEIAKEAEFF 875
P+V T QE +L+ + +E + D ++G M+EIP A +AD AKE +FF
Sbjct: 391 FPMVATIQEFRDAKALLEEERANLKNEGYEVADDIELGIMVEIPSTAALADIFAKEVDFF 450
Query: 876 SFGTNDLTQMTFGYSR--DDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRA 933
S GTNDL Q T R + V YL + P+ + V Q+I+ + G+
Sbjct: 451 SIGTNDLIQYTMAADRMSERVS-----YLYQ------PYNPAILRLVKQVIEASHAEGKW 499
Query: 934 ARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIAR 975
G+CGE G+ +++ GLD S S + AR
Sbjct: 500 ------TGMCGEMAGDQTAIPLLLGLGLDEFSMSATSILKAR 535
>pdb|2XZ9|A Chain A, Crystal Structure From The Phosphoenolpyruvate-Binding
Domain Of Enzyme I In Complex With Pyruvate From The
Thermoanaerobacter Tengcongensis Pep-Sugar
Phosphotransferase System (Pts)
pdb|2XZ9|B Chain B, Crystal Structure From The Phosphoenolpyruvate-Binding
Domain Of Enzyme I In Complex With Pyruvate From The
Thermoanaerobacter Tengcongensis Pep-Sugar
Phosphotransferase System (Pts)
Length = 324
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 149/336 (44%), Gaps = 76/336 (22%)
Query: 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAA 701
+++ + AN TP D +A NGA+G+GL RTE ++ +
Sbjct: 18 KKVMLAANIGTPKDVASALANGAEGVGLFRTEFLYMDRNS-------------------- 57
Query: 702 LDLLLPYQRSDFEG---IFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSE 758
LP + FE + M G PVTIR LD + LP D+ +
Sbjct: 58 ----LPSEEEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPK------------- 100
Query: 759 DEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVP 818
E+NP LG+R RL + P++ + Q+RAI +A+ + +IM P
Sbjct: 101 -----------EMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGN-------VQIMYP 142
Query: 819 LVGTPQELGHQISLIRNVATKVFSEMGSSLD--YKVGTMIEIPRAALVADEIAKEAEFFS 876
++ + +E+ S++ V ++ E G D KVG M+EIP AA+ AD +AKE +FFS
Sbjct: 143 MISSVEEVRKANSILEEVKAELDRE-GVKYDKEIKVGIMVEIPSAAVTADILAKEVDFFS 201
Query: 877 FGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936
GTNDLTQ T R + + + Y PF + V +I A + G+ A
Sbjct: 202 IGTNDLTQYTLAVDR--MNEHVKEYYQ-------PFHPAILRLVKMVIDAAHKEGKFA-- 250
Query: 937 SLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVP 972
+CGE G+P + GLD S S +P
Sbjct: 251 ----AMCGEMAGDPLAAVILLGLGLDEFSMSATSIP 282
>pdb|2XZ7|A Chain A, Crystal Structure Of The Phosphoenolpyruvate-Binding
Domain Of Enzyme I In Complex With Phosphoenolpyruvate
From The Thermoanaerobacter Tengcongensis Pep-Sugar
Phosphotransferase System (Pts)
Length = 325
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 149/336 (44%), Gaps = 76/336 (22%)
Query: 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAA 701
+++ + AN TP D +A NGA+G+GL RTE ++ +
Sbjct: 19 KKVMLAANIGTPKDVASALANGAEGVGLFRTEFLYMDRNS-------------------- 58
Query: 702 LDLLLPYQRSDFEG---IFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSE 758
LP + FE + M G PVTIR LD + LP D+ +
Sbjct: 59 ----LPSEEEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPK------------- 101
Query: 759 DEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVP 818
E+NP LG+R RL + P++ + Q+RAI +A+ + +IM P
Sbjct: 102 -----------EMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGN-------VQIMYP 143
Query: 819 LVGTPQELGHQISLIRNVATKVFSEMGSSLD--YKVGTMIEIPRAALVADEIAKEAEFFS 876
++ + +E+ S++ V ++ E G D KVG M+EIP AA+ AD +AKE +FFS
Sbjct: 144 MISSVEEVRKANSILEEVKAELDRE-GVKYDKEIKVGIMVEIPSAAVTADILAKEVDFFS 202
Query: 877 FGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936
GTNDLTQ T R + + + Y PF + V +I A + G+ A
Sbjct: 203 IGTNDLTQYTLAVDR--MNEHVKEYYQ-------PFHPAILRLVKMVIDAAHKEGKFA-- 251
Query: 937 SLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVP 972
+CGE G+P + GLD S S +P
Sbjct: 252 ----AMCGEMAGDPLAAVILLGLGLDEFSMSATSIP 283
>pdb|2WQD|A Chain A, Crystal Structure Of Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System In
The Dephosphorylated State
Length = 572
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 120/462 (25%), Positives = 195/462 (42%), Gaps = 99/462 (21%)
Query: 532 KSAILVRTETSPEDIGGMHA--AAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDN 589
+S ++V + +P D ++ G T GG TS +A+++R + G I
Sbjct: 156 ESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSASAIMSRSLEIPAIVGTKSIT---- 211
Query: 590 EKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLK---- 645
+ + GDM+I ++G G+VI+ A E + + E+++L+
Sbjct: 212 -QEVKQGDMII-------VDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADT 263
Query: 646 ---------VMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPE 696
+ AN TP+D NGAQGIGL RTE ++ D+ M E
Sbjct: 264 VTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQ---------MPTEEE 314
Query: 697 QRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGM 756
Q +A ++ + AM G V +R LD +
Sbjct: 315 QFEA------------YKEVLEAMGGKRVVVRTLD------------------------I 338
Query: 757 SEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIM 816
D+ S + E+NP LG+R RL ++ ++ Q+RA+ +A+V + IM
Sbjct: 339 GGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRALLRASVYGKLN-------IM 391
Query: 817 VPLVGTPQELGHQISLIRNVATKVFSE-MGSSLDYKVGTMIEIPRAALVADEIAKEAEFF 875
P+V T E +++ + +E S D ++G M+EIP A +AD AKE +FF
Sbjct: 392 FPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFF 451
Query: 876 SFGTNDLTQMTFGYSR--DDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRA 933
S GTNDL Q T R + V YL + P+ + V Q+I+ + + G+
Sbjct: 452 SIGTNDLIQYTLAADRMSERVS-----YLYQ------PYNPSILRLVKQVIEASHKEGKW 500
Query: 934 ARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIAR 975
G+CGE G+ +++ GLD S S + AR
Sbjct: 501 T------GMCGEMAGDETAIPLLLGLGLDEFSMSATSILKAR 536
>pdb|2BG5|A Chain A, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
pdb|2BG5|B Chain B, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
pdb|2BG5|C Chain C, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
pdb|2BG5|D Chain D, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
Length = 324
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 92/335 (27%), Positives = 142/335 (42%), Gaps = 74/335 (22%)
Query: 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAA 701
+++ + AN TP D +A NGA+G+GL RTE ++ +
Sbjct: 18 KKVXLAANIGTPKDVASALANGAEGVGLFRTEFLYXDRNS-------------------- 57
Query: 702 LDLLLPYQRSDFEG---IFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSE 758
LP + FE + G PVTIR LD +
Sbjct: 58 ----LPSEEEQFEAYKEVVEKXGGRPVTIRTLD------------------------IGG 89
Query: 759 DEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVP 818
D+ ++ E NP LG+R RL + P++ + Q+RAI +A+ + +I P
Sbjct: 90 DKELPYLDXPKEXNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGN-------VQIXYP 142
Query: 819 LVGTPQELGHQISLIRNVATKVFSE-MGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSF 877
+ + +E+ S++ V ++ E + + KVG +EIP AA+ AD +AKE +FFS
Sbjct: 143 XISSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIXVEIPSAAVTADILAKEVDFFSI 202
Query: 878 GTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPS 937
GTNDLTQ T R + + + Y PF + V +I A + G+ A
Sbjct: 203 GTNDLTQYTLAVDRXN--EHVKEYYQ-------PFHPAILRLVKXVIDAAHKEGKFA--- 250
Query: 938 LKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVP 972
CGE G+P + GLD S S +P
Sbjct: 251 ---AXCGEXAGDPLAAVILLGLGLDEFSXSATSIP 282
>pdb|2KX9|A Chain A, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2KX9|B Chain B, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2XDF|A Chain A, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2XDF|B Chain B, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/459 (24%), Positives = 179/459 (38%), Gaps = 105/459 (22%)
Query: 535 ILVRTETSPEDIG--GMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKS 592
ILV + +P + + G +T GG TSH +++AR + G +
Sbjct: 157 ILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQ----- 211
Query: 593 IVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLK------- 645
+ D+L L+ +V + M E S E+ +LK
Sbjct: 212 -------VKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITL 264
Query: 646 ------VMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRK 699
V AN T D A NGA+G+GL RTE +F D T E++
Sbjct: 265 DGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFLFMDRD----------ALPTEEEQF 314
Query: 700 AALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSED 759
AA ++ + A V +R +D + LP + +
Sbjct: 315 AA-----------YKAVAEACGSQAVIVRTMDIGGDKELPYMNFPK-------------- 349
Query: 760 EVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPL 819
E NP LG+R R+ + E+ Q+RAI +A+ + R IM P+
Sbjct: 350 ----------EENPFLGWRAIRIAMDRREILRDQLRAILRAS-AFGKLR------IMFPM 392
Query: 820 VGTPQE---LGHQISLIRNVATKVFSEMGSSLD--YKVGTMIEIPRAALVADEIAKEAEF 874
+ + +E L +I + + + + G + D ++G M+E P AA +A +AKE +F
Sbjct: 393 IISVEEVRALRKEIEIYK----QELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDF 448
Query: 875 FSFGTNDLTQMTFGYSR-DDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRA 933
FS GTNDLTQ T R +D+ L +S +L + Q+I + G+
Sbjct: 449 FSIGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNL----------IKQVIDASHAEGKW 498
Query: 934 ARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVP 972
G+CGE G+ + GLD S S +P
Sbjct: 499 ------TGMCGELAGDERATLLLLGMGLDEFSMSAISIP 531
>pdb|2L5H|A Chain A, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2L5H|B Chain B, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 178/459 (38%), Gaps = 105/459 (22%)
Query: 535 ILVRTETSPEDIG--GMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKS 592
ILV + +P + + G +T GG TS +++AR + G +
Sbjct: 157 ILVAADLTPSETAQLNLKKVLGFITDAGGRTSQTSIMARSLELPAIVGTGSVTSQ----- 211
Query: 593 IVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLK------- 645
+ D+L L+ +V + M E S E+ +LK
Sbjct: 212 -------VKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITL 264
Query: 646 ------VMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRK 699
V AN T D A NGA+G+GL RTE +F D T E++
Sbjct: 265 DGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFLFMDRD----------ALPTEEEQF 314
Query: 700 AALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSED 759
AA ++ + A V +R +D + LP + +
Sbjct: 315 AA-----------YKAVAEACGSQAVIVRTMDIGGDKELPYMNFPK-------------- 349
Query: 760 EVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPL 819
E NP LG+R R+ + E+ Q+RAI +A+ + R IM P+
Sbjct: 350 ----------EENPFLGWRAIRIAMDRREILRDQLRAILRAS-AFGKLR------IMFPM 392
Query: 820 VGTPQE---LGHQISLIRNVATKVFSEMGSSLD--YKVGTMIEIPRAALVADEIAKEAEF 874
+ + +E L +I + + + + G + D ++G M+E P AA +A +AKE +F
Sbjct: 393 IISVEEVRALRKEIEIYK----QELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDF 448
Query: 875 FSFGTNDLTQMTFGYSR-DDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRA 933
FS GTNDLTQ T R +D+ L +S +L + Q+I + G+
Sbjct: 449 FSIGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNL----------IKQVIDASHAEGKW 498
Query: 934 ARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVP 972
G+CGE G+ + GLD S S +P
Sbjct: 499 ------TGMCGELAGDERATLLLLGMGLDEFSMSAISIP 531
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 144/617 (23%), Positives = 238/617 (38%), Gaps = 135/617 (21%)
Query: 382 FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCEILERHYKDMMDIEFTVQ--EN 439
F A+ V + PE+ S E EL +E+HY MDIE+ +
Sbjct: 267 FTDKAEAGKSVTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDG 326
Query: 440 RLWMLQCR-----SGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDP 494
+L++LQ R S + + + A++ L + RA
Sbjct: 327 KLYILQARPETVKSQEEGNRNLRRFAINGDKTVLCEGRAI-------------------- 366
Query: 495 SAYKDKVVATGLPASPGAAVGQ-VVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAA 553
G VGQ V +DA + +LV T P+ M A+
Sbjct: 367 ----------------GQKVGQGKVRLIKDASEMDSVEAGDVLVTDMTDPDWEPVMKRAS 410
Query: 554 GILTARGGMTSHAAVVARGWGKCCVSGCSD-IRVNDNEKSIVVGDMVISEGDWLS----- 607
I+T RGG T HAA++AR G V GC + + N + + V +EGD
Sbjct: 411 AIVTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQEVTVS---CAEGDTGFIYAGL 467
Query: 608 LNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGI 667
L+ +V L P AP +KVM N P+ A + N ++GI
Sbjct: 468 LDVQITDVALDNMPKAP-------------------VKVMMNVGNPELAFSFANLPSEGI 508
Query: 668 GLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFE---GIFRAMDGLP 724
GL R E + + + I + P+ LL + + D E I R + G
Sbjct: 509 GLARMEFI----------INRQI-GIHPKA-------LLEFDKQDDELKAEITRRIAGYA 550
Query: 725 VTIRLLDPPLHE--------FLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLG 776
+ + E P + IV ++ + V + + E NPMLG
Sbjct: 551 SPVDFYVDKIAEGVATLAASVYPR---KTIVRMSDFKSNEYANLVGGNVYEPHEENPMLG 607
Query: 777 FRGC--RLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIR 834
FRG + ++ + ++ +A+ + M EIM+P V T LG ++++
Sbjct: 608 FRGAARYVADNFKDCFALECKALKRVRDEMGLTNV----EIMIPFVRT---LGEAEAVVK 660
Query: 835 NVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDV 894
+ + L ++ M E+P A++A++ + + FS G+ND+TQ+T G RD
Sbjct: 661 ALKENGLERGKNGL--RLIMMCELPSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRD-- 716
Query: 895 GKFLPVYLSKGILQSDPFEVLDQK--GVGQLIKIATERGRAARPSLKVGICGEH-GGEPS 951
G++ E D++ V ++ +A R + + VGICG+ P
Sbjct: 717 ---------SGLVS----ESFDERNPAVKVMLHLAISACR--KQNKYVGICGQGPSDHPD 761
Query: 952 SVAFFAEAGLDYVSCSP 968
+ E G++ VS +P
Sbjct: 762 FAKWLVEEGIESVSLNP 778
>pdb|2HWG|A Chain A, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
pdb|2HWG|B Chain B, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
Length = 575
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 111/448 (24%), Positives = 176/448 (39%), Gaps = 83/448 (18%)
Query: 535 ILVRTETSPEDIG--GMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKS 592
ILV + +P + + G +T GG TS ++ AR + G +
Sbjct: 157 ILVAADLTPSETAQLNLKKVLGFITDAGGRTSXTSIXARSLELPAIVGTGSVTSQVKNDD 216
Query: 593 IVVGDMVISEGDWLSLNGSTGEVI-----LGKQPLAPPAMSGDLEIFMSWADEIRRLKVM 647
++ D V + + +N T EVI + +Q + A L+ + + +++V
Sbjct: 217 YLILDAV---NNQVYVN-PTNEVIDKXRAVQEQVASEKAELAKLKDLPAITLDGHQVEVC 272
Query: 648 ANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707
AN T D A NGA+G+GL RTE +F D T E++ AA
Sbjct: 273 ANIGTVRDVEGAERNGAEGVGLYRTEFLFXDRD----------ALPTEEEQFAA------ 316
Query: 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEK 767
++ + A V +R D + LP + +
Sbjct: 317 -----YKAVAEACGSQAVIVRTXDIGGDKELPYXNFPK---------------------- 349
Query: 768 LSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELG 827
E NP LG+R R+ E+ Q+RAI +A+ + R FP I+ V + L
Sbjct: 350 --EENPFLGWRAIRIAXDRREILRDQLRAILRAS-AFGKLRIX-FPXIIS--VEEVRALR 403
Query: 828 HQISLIRNVATKVFSEMGSSLD--YKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQM 885
+I + + + + G + D ++G +E P AA +A +AKE +FFS GTNDLTQ
Sbjct: 404 KEIEIYK----QELRDEGKAFDESIEIGVXVETPAAATIARHLAKEVDFFSIGTNDLTQY 459
Query: 886 TFGYSR-DDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICG 944
T R +D L S +L + Q+I + G+ G CG
Sbjct: 460 TLAVDRGNDXISHLYQPXSPSVLNL----------IKQVIDASHAEGKW------TGXCG 503
Query: 945 EHGGEPSSVAFFAEAGLDYVSCSPFRVP 972
E G+ + GLD S S +P
Sbjct: 504 ELAGDERATLLLLGXGLDEFSXSAISIP 531
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From
Bacillus Stearothermophilus
Length = 587
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 512 AAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVAR 571
+A G+ V + EA ILV T + + + AA I+T GG+TSHAAVV
Sbjct: 488 SAFGKAVVAKTAEEARQKMVDGGILVTVSTDADMMPAIEKAAAIITEEGGLTSHAAVVGL 547
Query: 572 GWGKCCVSGCSD 583
G + G +
Sbjct: 548 SLGIPVIVGVEN 559
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 201 LSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPH 260
V S A+S G+ V+NLGL E A ++ G FA DV +
Sbjct: 317 FGVYSPVALSKYGIDVPVMNLGLGVERLAMIS----GNFA------------DVREMVYP 360
Query: 261 SLFEEKLEHMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKA 320
+E KL A VKLD ++ +L K+ ++ K D K +L+++
Sbjct: 361 QFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK------DLKSPCELAIEK 414
Query: 321 VFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYG 380
F + + +K + G +I ++ GN G F G + +
Sbjct: 415 TFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESF-----DGVKEEFK 469
Query: 381 EFLINAQGEDVVAGIR 396
+FL + E V GIR
Sbjct: 470 DFLEKGKSEGVATGIR 485
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 201 LSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPH 260
V S A+S G+ V+NLGL E A ++ G FA DV +
Sbjct: 317 FGVYSPVALSKYGIDVPVMNLGLGVERLAMIS----GNFA------------DVREMVYP 360
Query: 261 SLFEEKLEHMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKA 320
+E KL A VKLD ++ +L K+ ++ K D K +L+++
Sbjct: 361 QFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK------DLKSPCELAIEK 414
Query: 321 VFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYG 380
F + + +K + G +I ++ GN G F G + +
Sbjct: 415 TFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESF-----DGVKEEFK 469
Query: 381 EFLINAQGEDVVAGIR 396
+FL + E V GIR
Sbjct: 470 DFLEKGKSEGVATGIR 485
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 201 LSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPH 260
V S A+S G+ V+NLGL E A ++ G FA DV +
Sbjct: 317 FGVYSPVALSKYGIDVPVMNLGLGVERLAMIS----GNFA------------DVREMVYP 360
Query: 261 SLFEEKLEHMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKA 320
+E KL A VKLD ++ +L K+ ++ K D K +L+++
Sbjct: 361 QFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK------DLKSPCELAIEK 414
Query: 321 VFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYG 380
F + + +K + G +I ++ GN G F G + +
Sbjct: 415 TFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESF-----DGVKEEFK 469
Query: 381 EFLINAQGEDVVAGIR 396
+FL + E V GIR
Sbjct: 470 DFLEKGKSEGVATGIR 485
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 201 LSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPH 260
V S A+S G+ V+NLGL E A ++ G FA DV +
Sbjct: 317 FGVYSPVALSKYGIDVPVMNLGLGVERLAMIS----GNFA------------DVREMVYP 360
Query: 261 SLFEEKLEHMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKA 320
+E KL A VKLD ++ +L K+ ++ K D K +L+++
Sbjct: 361 QFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK------DLKSPCELAIEK 414
Query: 321 VFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYG 380
F + + +K + G +I ++ GN G F G + +
Sbjct: 415 TFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESF-----DGVKEEFK 469
Query: 381 EFLINAQGEDVVAGIR 396
+FL + E V GIR
Sbjct: 470 DFLEKGKSEGVATGIR 485
>pdb|3BH1|A Chain A, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|B Chain B, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|C Chain C, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|D Chain D, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
Length = 507
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 255 VMGIPHSLFEEKLEHMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQL 314
++G S+ L+H+ G+ L + + E ++ K V++ + +D + +
Sbjct: 381 LLGCSSSMLLNALKHLA---GIDDAIHLLSPESIEPIQTLKTVHLGSSNPRLHTD-EVLI 436
Query: 315 QLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNM--GNTSGTGVLFTRNPS 372
LSV A DS ++++Q+ L+G V+ + G++ G GVL T +P
Sbjct: 437 ALSVSAATDSN------AQKALDQLKNLRGCDVHT-TTILGSVDEGIFRNLGVLVTSDPK 489
Query: 373 TGENKLY 379
+NKLY
Sbjct: 490 FQKNKLY 496
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 67 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXH 126
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 127 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 158
>pdb|3CQN|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQN|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQR|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
pdb|3CQR|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
Length = 185
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 704 LLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFS 763
L+ + SDF G + GL T D LHEF EGD ++V ++ + F+
Sbjct: 14 LVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGD-NKLVGNISWRIKTLDSGFFT 72
Query: 764 R 764
R
Sbjct: 73 R 73
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 67 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 127 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 158
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 75 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 134
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 135 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 166
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 67 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 127 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 158
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 66 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 126 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 157
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 86 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 145
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 146 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 177
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 367 FTRNPSTGENKLYGE------FLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCE 420
FTR+ TG +YGE F++ G +++ + N + ++ A E ++
Sbjct: 67 FTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 421 ILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAV 461
++ K+ M+I ++ R G R GK + KI +
Sbjct: 127 VVFGKVKEGMNIVEAME---------RFGSRNGKTSKKITI 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,167,502
Number of Sequences: 62578
Number of extensions: 1185045
Number of successful extensions: 3264
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3166
Number of HSP's gapped (non-prelim): 46
length of query: 983
length of database: 14,973,337
effective HSP length: 108
effective length of query: 875
effective length of database: 8,214,913
effective search space: 7188048875
effective search space used: 7188048875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)