Query 039683
Match_columns 983
No_of_seqs 390 out of 2493
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09279 pyruvate phosphate di 100.0 2E-195 4E-200 1764.4 85.7 869 110-983 3-872 (879)
2 TIGR01828 pyru_phos_dikin pyru 100.0 5E-180 1E-184 1636.6 84.6 855 110-973 1-856 (856)
3 TIGR01418 PEP_synth phosphoeno 100.0 3E-126 6E-131 1164.1 63.0 707 112-981 1-780 (782)
4 PRK06464 phosphoenolpyruvate s 100.0 3E-126 7E-131 1162.2 59.3 705 110-981 4-787 (795)
5 COG0574 PpsA Phosphoenolpyruva 100.0 2E-102 5E-107 950.8 42.9 693 111-982 3-738 (740)
6 COG1080 PtsA Phosphoenolpyruva 100.0 6E-101 1E-105 877.8 31.2 456 417-981 69-541 (574)
7 PRK05878 pyruvate phosphate di 100.0 3.7E-93 8.1E-98 831.3 46.9 484 109-653 5-491 (530)
8 PRK11061 fused phosphoenolpyru 100.0 9.1E-92 2E-96 856.5 37.1 454 417-981 237-706 (748)
9 PRK11177 phosphoenolpyruvate-p 100.0 1.5E-90 3.3E-95 820.6 36.8 456 417-981 68-540 (575)
10 TIGR01417 PTS_I_fam phosphoeno 100.0 1.4E-87 3E-92 796.8 36.5 456 417-981 67-539 (565)
11 COG3605 PtsP Signal transducti 100.0 4.5E-81 9.8E-86 700.9 29.1 451 417-977 244-710 (756)
12 PF02896 PEP-utilizers_C: PEP- 100.0 1.4E-70 2.9E-75 600.9 22.3 278 636-981 12-292 (293)
13 PRK06241 phosphoenolpyruvate s 100.0 3.8E-53 8.2E-58 526.4 32.5 272 110-450 2-312 (871)
14 PF01326 PPDK_N: Pyruvate phos 100.0 2.3E-45 4.9E-50 413.1 18.6 278 127-468 2-324 (327)
15 PRK05849 hypothetical protein; 100.0 1.4E-41 3.1E-46 411.6 25.9 178 274-476 56-241 (783)
16 PRK11377 dihydroxyacetone kina 99.8 2.3E-21 5.1E-26 225.8 8.8 160 417-618 311-472 (473)
17 COG3848 Phosphohistidine swive 99.8 4.4E-19 9.6E-24 160.9 6.8 108 502-621 2-109 (111)
18 PF00391 PEP-utilizers: PEP-ut 99.7 2.1E-17 4.6E-22 148.6 6.0 73 529-613 7-80 (80)
19 PRK08296 hypothetical protein; 99.7 8.2E-17 1.8E-21 191.6 9.1 100 503-617 500-601 (603)
20 PRK06354 pyruvate kinase; Prov 99.7 9.2E-17 2E-21 191.6 8.5 109 500-621 480-588 (590)
21 PRK05865 hypothetical protein; 99.6 9.2E-16 2E-20 189.6 11.7 104 502-619 735-838 (854)
22 TIGR03239 GarL 2-dehydro-3-deo 99.6 7.4E-14 1.6E-18 151.5 21.9 141 812-980 85-243 (249)
23 PRK10558 alpha-dehydro-beta-de 99.6 2.2E-13 4.8E-18 148.4 22.6 142 812-981 92-251 (256)
24 PRK10128 2-keto-3-deoxy-L-rham 99.5 3E-13 6.5E-18 147.7 19.1 140 813-980 92-250 (267)
25 COG3836 HpcH 2,4-dihydroxyhept 99.5 1.7E-13 3.7E-18 142.8 15.7 141 813-981 91-250 (255)
26 TIGR02311 HpaI 2,4-dihydroxyhe 99.5 2.7E-12 5.9E-17 139.5 21.2 138 813-981 86-245 (249)
27 PF03328 HpcH_HpaI: HpcH/HpaI 99.2 7E-10 1.5E-14 118.7 16.5 122 812-967 85-212 (221)
28 TIGR01588 citE citrate lyase, 99.0 7.1E-08 1.5E-12 107.4 22.5 135 813-977 87-232 (288)
29 TIGR01064 pyruv_kin pyruvate k 98.5 1E-06 2.2E-11 104.4 14.8 118 813-970 186-314 (473)
30 PRK05826 pyruvate kinase; Prov 98.5 6.3E-07 1.4E-11 105.4 11.3 136 787-969 169-315 (465)
31 PLN02623 pyruvate kinase 98.4 2.4E-06 5.1E-11 101.9 14.6 144 777-970 266-420 (581)
32 PRK03955 hypothetical protein; 98.1 3E-06 6.6E-11 82.9 4.3 48 553-617 80-128 (131)
33 PTZ00300 pyruvate kinase; Prov 98.0 4.3E-05 9.2E-10 89.7 13.4 143 777-969 135-288 (454)
34 cd00288 Pyruvate_Kinase Pyruva 98.0 4.3E-05 9.4E-10 90.4 11.8 116 813-969 189-315 (480)
35 cd00727 malate_synt_A Malate s 97.9 0.00067 1.5E-08 80.3 20.9 149 813-978 186-357 (511)
36 cd00480 malate_synt Malate syn 97.9 0.00022 4.8E-09 85.0 16.3 153 812-979 185-358 (511)
37 TIGR01344 malate_syn_A malate 97.8 0.00035 7.6E-09 82.6 15.2 151 813-979 187-359 (511)
38 COG2301 CitE Citrate lyase bet 97.7 0.00028 6.1E-09 77.9 12.8 159 777-977 56-224 (283)
39 PRK09255 malate synthase; Vali 97.7 0.00054 1.2E-08 81.5 15.0 148 813-977 207-377 (531)
40 PRK09206 pyruvate kinase; Prov 97.5 0.00044 9.6E-09 81.6 11.3 144 777-969 160-314 (470)
41 PRK06354 pyruvate kinase; Prov 97.5 0.00061 1.3E-08 82.7 11.9 117 813-969 193-320 (590)
42 PRK06247 pyruvate kinase; Prov 97.5 0.00076 1.7E-08 79.6 12.3 113 813-969 188-311 (476)
43 PLN02626 malate synthase 97.0 0.011 2.4E-07 70.3 14.6 150 813-979 213-385 (551)
44 PF00224 PK: Pyruvate kinase, 96.8 0.016 3.6E-07 66.5 14.5 134 786-967 171-315 (348)
45 PRK08187 pyruvate kinase; Vali 96.8 0.004 8.7E-08 74.1 9.7 116 814-968 327-458 (493)
46 PRK06739 pyruvate kinase; Vali 96.3 0.042 9.2E-07 62.9 12.8 117 813-969 180-307 (352)
47 PTZ00066 pyruvate kinase; Prov 95.9 0.064 1.4E-06 64.2 12.2 121 777-946 197-317 (513)
48 PLN02762 pyruvate kinase compl 95.4 0.16 3.4E-06 61.0 13.0 95 813-946 218-312 (509)
49 PLN02765 pyruvate kinase 94.7 0.29 6.2E-06 58.9 12.7 142 777-967 194-346 (526)
50 PLN02461 Probable pyruvate kin 94.4 0.33 7.2E-06 58.3 12.1 135 787-968 189-334 (511)
51 PRK14725 pyruvate kinase; Prov 93.5 0.39 8.5E-06 58.4 10.6 116 814-969 447-576 (608)
52 PF05524 PEP-utilisers_N: PEP- 93.2 0.015 3.2E-07 56.7 -1.6 57 418-479 66-122 (123)
53 PF01274 Malate_synthase: Mala 87.7 2 4.4E-05 51.9 9.1 150 812-977 204-375 (526)
54 cd00728 malate_synt_G Malate s 84.1 2.3 4.9E-05 52.0 7.0 78 810-891 380-462 (712)
55 TIGR01345 malate_syn_G malate 84.0 2.5 5.3E-05 51.8 7.3 67 810-880 385-452 (721)
56 PRK02999 malate synthase G; Pr 81.3 6.8 0.00015 48.2 9.5 66 811-880 389-455 (726)
57 COG2225 AceB Malate synthase [ 79.4 4.3 9.4E-05 48.5 7.0 55 813-871 220-275 (545)
58 COG0469 PykF Pyruvate kinase [ 76.7 14 0.00031 44.2 10.3 94 813-946 190-283 (477)
59 PF14010 PEPcase_2: Phosphoeno 64.9 40 0.00086 40.6 10.4 152 787-967 95-279 (491)
60 PF08262 Lem_TRP: Leucophaea m 62.9 3.6 7.8E-05 22.6 0.6 9 773-781 2-10 (10)
61 KOG2323 Pyruvate kinase [Carbo 60.1 28 0.0006 41.9 7.9 143 776-969 181-335 (501)
62 cd00429 RPE Ribulose-5-phospha 45.7 2.4E+02 0.0053 29.3 11.8 94 849-971 105-198 (211)
63 TIGR01163 rpe ribulose-phospha 44.6 2.4E+02 0.0052 29.4 11.5 92 850-970 105-196 (210)
64 COG0574 PpsA Phosphoenolpyruva 42.8 6.7 0.00015 49.8 -0.7 27 552-579 695-721 (740)
65 cd02810 DHOD_DHPD_FMN Dihydroo 40.9 1.2E+02 0.0025 33.8 8.9 49 919-971 228-276 (289)
66 PRK08883 ribulose-phosphate 3- 38.1 4.3E+02 0.0094 28.5 12.3 133 780-969 63-197 (220)
67 cd00954 NAL N-Acetylneuraminic 37.2 1.6E+02 0.0035 32.9 9.2 62 643-733 70-137 (288)
68 PRK05848 nicotinate-nucleotide 35.8 1.5E+02 0.0032 33.3 8.5 45 918-968 214-258 (273)
69 PRK05437 isopentenyl pyrophosp 35.7 3.4E+02 0.0073 31.5 11.7 44 919-968 173-218 (352)
70 COG1786 Swiveling domain assoc 35.4 22 0.00047 35.0 1.6 48 553-616 80-128 (131)
71 TIGR02087 LEUD_arch 3-isopropy 34.3 35 0.00075 35.0 3.0 59 559-617 59-123 (154)
72 TIGR02090 LEU1_arch isopropylm 34.0 8.1E+02 0.018 28.5 15.0 114 812-968 38-162 (363)
73 PRK08245 hypothetical protein; 31.4 2.3E+02 0.005 31.0 9.0 88 527-618 82-186 (240)
74 cd03174 DRE_TIM_metallolyase D 30.9 5E+02 0.011 28.1 11.7 49 919-969 112-168 (265)
75 PRK12487 ribonuclease activity 30.7 2.5E+02 0.0054 29.1 8.5 87 527-617 52-154 (163)
76 PRK06201 hypothetical protein; 29.8 2.8E+02 0.006 30.1 9.2 87 527-617 74-176 (221)
77 TIGR02998 RraA_entero regulato 29.7 2.5E+02 0.0054 29.1 8.3 87 527-617 52-154 (161)
78 cd04506 SGNH_hydrolase_YpmR_li 27.8 84 0.0018 32.6 4.7 27 919-945 103-129 (204)
79 TIGR01305 GMP_reduct_1 guanosi 27.7 1.2E+02 0.0025 35.1 6.0 51 604-667 123-175 (343)
80 cd01828 sialate_O-acetylestera 27.0 71 0.0015 32.1 3.9 11 873-883 52-62 (169)
81 PRK05581 ribulose-phosphate 3- 26.8 7.2E+02 0.015 26.1 11.7 94 849-971 109-202 (220)
82 cd04740 DHOD_1B_like Dihydroor 26.5 4.7E+02 0.01 29.1 10.7 47 919-971 218-264 (296)
83 TIGR01859 fruc_bis_ald_ fructo 26.4 9.6E+02 0.021 27.0 14.4 127 792-967 27-173 (282)
84 PRK00439 leuD 3-isopropylmalat 26.4 57 0.0012 33.7 3.0 21 598-618 107-127 (163)
85 cd01820 PAF_acetylesterase_lik 26.3 74 0.0016 33.6 4.0 29 919-947 110-138 (214)
86 PLN02821 1-hydroxy-2-methyl-2- 26.0 1E+02 0.0023 36.8 5.4 47 919-966 119-165 (460)
87 COG2352 Ppc Phosphoenolpyruvat 25.9 3E+02 0.0064 35.5 9.3 183 744-957 415-622 (910)
88 COG0329 DapA Dihydrodipicolina 25.1 2.8E+02 0.006 31.4 8.5 92 600-728 35-136 (299)
89 PRK12360 4-hydroxy-3-methylbut 24.5 1.2E+02 0.0026 34.1 5.4 45 919-964 14-58 (281)
90 PRK07259 dihydroorotate dehydr 23.9 4.4E+02 0.0095 29.5 9.9 46 919-970 221-266 (301)
91 PRK09262 hypothetical protein; 23.6 3.8E+02 0.0082 29.2 8.8 87 527-617 72-174 (225)
92 TIGR02798 ligK_PcmE 4-carboxy- 23.2 3E+02 0.0064 30.0 7.8 88 527-618 70-173 (222)
93 PRK06843 inosine 5-monophospha 22.6 1.5E+02 0.0033 35.1 5.9 52 604-668 167-220 (404)
94 PRK13371 4-hydroxy-3-methylbut 22.6 1.3E+02 0.0029 35.2 5.4 46 919-965 51-96 (387)
95 PTZ00398 phosphoenolpyruvate c 22.4 1.6E+03 0.035 29.9 15.5 131 786-942 524-661 (974)
96 PF01729 QRPTase_C: Quinolinat 22.1 1.5E+02 0.0033 30.8 5.2 45 918-968 112-156 (169)
97 cd00952 CHBPH_aldolase Trans-o 21.9 3.1E+02 0.0068 31.1 8.2 93 604-733 44-144 (309)
98 TIGR02313 HpaI-NOT-DapA 2,4-di 21.6 3.2E+02 0.007 30.7 8.1 89 604-728 36-133 (294)
99 PRK07807 inosine 5-monophospha 21.6 1.4E+02 0.003 36.3 5.4 53 603-668 240-294 (479)
100 PRK07428 nicotinate-nucleotide 21.5 4.1E+02 0.009 30.1 8.9 45 918-968 228-272 (288)
101 PRK09389 (R)-citramalate synth 21.2 1.5E+03 0.033 27.5 14.6 114 812-967 40-163 (488)
102 PRK06096 molybdenum transport 21.2 4.4E+02 0.0096 29.8 9.0 45 918-968 221-265 (284)
103 TIGR00262 trpA tryptophan synt 20.9 1.1E+03 0.025 25.9 18.3 187 730-974 43-234 (256)
104 cd01830 XynE_like SGNH_hydrola 20.9 1.3E+02 0.0027 31.5 4.5 25 918-944 102-126 (204)
105 PRK13533 7-cyano-7-deazaguanin 20.8 1.2E+03 0.027 28.3 13.2 123 813-968 122-248 (487)
106 PRK00112 tgt queuine tRNA-ribo 20.5 3E+02 0.0065 32.2 7.7 46 919-969 225-270 (366)
107 TIGR01334 modD putative molybd 20.4 4.5E+02 0.0098 29.6 8.8 45 918-968 220-264 (277)
No 1
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=1.9e-195 Score=1764.41 Aligned_cols=869 Identities=66% Similarity=1.060 Sum_probs=838.9
Q ss_pred cceEEEccCCCccCCccCccccCHHHHhHHHHHhCCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHHhc
Q 039683 110 EKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKEMG 189 (983)
Q Consensus 110 ~~~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~~~ 189 (983)
.++|++|++++.+++..+..++||||+||++|.++|+||||||+|||++|++|+++++.+|+++|++|.+.++.+|..+|
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~~~g 82 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTNLGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEELTG 82 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHHCCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHHHhC
Confidence 47999998887888999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCC-chhHHHHHHHHhhccCcccccCcchHHHHHH
Q 039683 190 ALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLE 268 (983)
Q Consensus 190 ~~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~-~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l~ 268 (983)
+.||++.+|||+|||||+++||||||+||+|.||||+++.+|++.+|+ +||||+||||+++||+++++|+++.|++.++
T Consensus 83 ~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~~~~ 162 (879)
T PRK09279 83 KKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEEILE 162 (879)
T ss_pred cccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHhhcCccccCCCChhhHHHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCCCCCceEE
Q 039683 269 HMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348 (983)
Q Consensus 269 ~~~~~~~vavrSs~~~ED~~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~~~~maV~ 348 (983)
+++...++..+++++++||.++...|+.+|...+|.+||+||++||..||++||+||||+||+.||+.+|++++.+|||+
T Consensus 163 ~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~~g~AV~ 242 (879)
T PRK09279 163 ELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFPQDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPEDWGTAVN 242 (879)
T ss_pred HHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcccCceEE
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999998999999
Q ss_pred EEEcccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhhhhcchHHHHHHHHHHHHHHHHhcc
Q 039683 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCEILERHYKD 428 (983)
Q Consensus 349 VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~~~~~p~~~~~La~~a~ilE~~~~~ 428 (983)
||+||+||+++.++|||+||+||.||+++.+|+|+++|+||+||+|.++|+.+..++...|+.+++|++++..||.||+.
T Consensus 243 VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~~~Ge~l~~aqGedVVsG~~tp~~~~~l~~~~p~~~~~L~~~~~~LE~~f~~ 322 (879)
T PRK09279 243 VQAMVFGNMGEDSGTGVAFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPQPIPSLEEAMPEVYAELVDIAKKLEKHYRD 322 (879)
T ss_pred EEeccccCCCCCcceEEEEeCCCCCCCCceeEEEecCCCChhhhcCccCcchhHHHhhcChHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999877778899999999999999999999
Q ss_pred ccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcccchhhhhcCCCC
Q 039683 429 MMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPA 508 (983)
Q Consensus 429 ~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vl~~G~~~ 508 (983)
||||||+++++++||||+||.++++.+|++++++++.+|+++.++++.++.+.++++++||.+.... ...++++|+++
T Consensus 323 pqDIEftie~g~L~iLQtRp~krt~~aavriavd~~~eg~i~~~ea~~rv~p~~l~~ll~p~~~~~~--~~~~l~~G~~a 400 (879)
T PRK09279 323 MQDIEFTIERGKLYMLQTRNGKRTAKAAVKIAVDMVEEGLITKEEAVLRVEPEQLDQLLHPTFDPKA--LKDVIAKGLPA 400 (879)
T ss_pred CeeeEEEEECCEEEEEEeCCcccchHHHHHHHHHHHhccCCCHHHHhhcCCHHHHHHhcccccCccc--ccccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999986432 23588999999
Q ss_pred CCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEeccCcccccc
Q 039683 509 SPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVND 588 (983)
Q Consensus 509 s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~ 588 (983)
|||+++|+|+++.++++.+.+.++++|||+++++|+|+..|+++.||||+.||.|||+|||||+||||||+||+++.+|.
T Consensus 401 spGaa~G~v~~~~~~a~~~~~~~~~~ILV~~et~P~di~~m~~a~GIvT~~GG~TSHAAIVAR~lGiP~VvG~~~~~id~ 480 (879)
T PRK09279 401 SPGAATGKIVFTADEAEALAARGEKVILVRPETSPEDIHGMHAAEGILTARGGMTSHAAVVARGMGKPCVVGAGALRIDE 480 (879)
T ss_pred CCCeEEEEEEEChHHHHHhhccCCCEEEEECCCCHHHHhhhhHeeEEEEeCCCccchHHHHHHHcCCCEEeccCcceEec
Confidence 99999999999988888777788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHHHHHHHhhhhhceEEEecCCChHhHHHHHHcCCCccc
Q 039683 589 NEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGIG 668 (983)
Q Consensus 589 ~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~v~aNi~~p~d~~~a~~~ga~GIG 668 (983)
..|++++++..+++||+|||||++|.||.|+.+...+.+...+..++.|.+..++++|++|+++|+|++.|+++||+|||
T Consensus 481 ~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~~~~~~~~~~~~~~~l~~~ad~~~~~~V~aNa~~p~da~~a~~~GA~GIG 560 (879)
T PRK09279 481 KAKTFTVGGGTLKEGDVITIDGSTGEVYLGEVPTVEPELSGDFATLMEWADEIRRLGVRANADTPEDARTAREFGAEGIG 560 (879)
T ss_pred ccCEEEECCEEecCCCEEEEECCCCEEEECCchhhhhhhHHHHHHHHhhccCceEEEEEEcCCCHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999999999988777777888899999988899999999999999999999999999
Q ss_pred cchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcCCCcEEEEecCCCCCCCCCCCchHHHHH
Q 039683 669 LCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVN 748 (983)
Q Consensus 669 L~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~~~pVtiR~lD~~~~eflp~~~~~~~~~ 748 (983)
|||||||||..+ ++|.+|+||++.++++|+++|++|+++|+++|++|+++|.|+||||||||+|+|||||+. ++.++
T Consensus 561 L~RTE~mf~~~~-r~~~~~~mi~~~~eeer~~al~~l~~~Q~~~f~~i~~am~g~pVtIRlLD~plheflp~~--~~~~~ 637 (879)
T PRK09279 561 LCRTEHMFFGED-RIPAVREMILADDEEERRAALAKLLPMQREDFKGIFEAMDGLPVTIRLLDPPLHEFLPHT--EEEIE 637 (879)
T ss_pred ehhccHhHhcCC-CCCchHHHhhcCCHHHHHHHHHHhhhhHHHHHHHHHHHhCCCEEEEEeccCcccccCCcc--HHHHH
Confidence 999999999987 899999999999999999999999999999999999999999999999999999999994 67889
Q ss_pred HHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHH
Q 039683 749 ELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGH 828 (983)
Q Consensus 749 ~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~ 828 (983)
+++++.|.+.||+.+++..++|.||||||||||+++.||+||++|+|||+||+..+.++|..++++||||||++++|++.
T Consensus 638 ~~a~~~g~~~~k~~~~~~~~~E~NPmLG~RG~Rl~l~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~ 717 (879)
T PRK09279 638 ELAEALGLSLEELKARVEALHEFNPMLGHRGCRLGITYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKL 717 (879)
T ss_pred HHHHHcCCCHHHHHHHhcCCCCCCCccccchhhcccCChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888887899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCC
Q 039683 829 QISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQ 908 (983)
Q Consensus 829 ~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~ 908 (983)
+++.++++++++..+.|.+.++++|+|||+|+|++.+|+||+++||||||||||||||||+||+|.++|++.|+++||++
T Consensus 718 ~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~ 797 (879)
T PRK09279 718 VKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALTADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILE 797 (879)
T ss_pred HHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHhHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCccc
Confidence 99999999998887778877899999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCchHHHHHHhhhhcC
Q 039683 909 SDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 983 (983)
Q Consensus 909 ~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~i~~~r~a~a~~~~ 983 (983)
+||||.+|+|+|++||++++++|+++|+|++|||||||++||.++++|+++|+|+|||||++||.+|+|+||+++
T Consensus 798 ~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICGE~ggdp~~i~~l~~lGld~vS~sP~~Vp~arlaaaqa~~ 872 (879)
T PRK09279 798 EDPFESLDQEGVGELVEIAVERGRATRPDLKLGICGEHGGDPASIEFCHKVGLDYVSCSPYRVPIARLAAAQAAL 872 (879)
T ss_pred CCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECCCCccCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988999999999999999999999999999999999999999999999974
No 2
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=5.2e-180 Score=1636.64 Aligned_cols=855 Identities=65% Similarity=1.090 Sum_probs=806.8
Q ss_pred cceEEEccCCCccCCccCccccCHHHHhHHHHHhCCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHHhc
Q 039683 110 EKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKEMG 189 (983)
Q Consensus 110 ~~~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~~~ 189 (983)
+++|++| ++....+..++|||++||++|.+.|+||||||||||++|+.|+++++++|+++|++|.+.++.+++.+|
T Consensus 1 ~~~v~~~----~~~~~~~~~~~GgK~a~L~em~~~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g 76 (856)
T TIGR01828 1 KKRVYAF----GEGNASMKNLLGGKGANLAEMTKLGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTG 76 (856)
T ss_pred CCeEEEC----CCCCchhhhhcCHHHHhHHHHHhCCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhC
Confidence 3699999 677788899999999999999999999999999999999999999888999999999999999999999
Q ss_pred cccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCC-chhHHHHHHHHhhccCcccccCcchHHHHHH
Q 039683 190 ALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKLE 268 (983)
Q Consensus 190 ~~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~-~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l~ 268 (983)
+.||++++|+++++||++++||||||++|+|.|||++++++|++.+|+ +||||+|+||+++||.++++|+++.|+..++
T Consensus 77 ~~fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~ 156 (856)
T TIGR01828 77 KKFGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILE 156 (856)
T ss_pred cccCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred HHHhhcCccccCCCChhhHHHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCCCCCceEE
Q 039683 269 HMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVN 348 (983)
Q Consensus 269 ~~~~~~~vavrSs~~~ED~~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~~~~maV~ 348 (983)
+++.+.++..++.++.|||..++..|+..|...+|.+||++|++||..||++||+||||+||+.||+++|++++.+|||+
T Consensus 157 ~~~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~~~~aV~ 236 (856)
T TIGR01828 157 AMKEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPEDWGTAVN 236 (856)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcccCcEEE
Confidence 99999999999999999998876666666656679999999999999999999999999999999999999988999999
Q ss_pred EEEcccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhhhhcchHHHHHHHHHHHHHHHHhcc
Q 039683 349 IQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCEILERHYKD 428 (983)
Q Consensus 349 VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~~~~~p~~~~~La~~a~ilE~~~~~ 428 (983)
||+||+||+++.++|||+||+||.||+++.+|+|+++|+|++||+|.++|+.|...+...|+.+++|++++..||.||+.
T Consensus 237 VQ~MV~g~~~~~s~SGV~FTrdP~tg~~~~~g~~~i~a~ge~vVsG~~tp~~~~~~~~~~p~~~~~L~~~a~~lE~~fg~ 316 (856)
T TIGR01828 237 IQSMVFGNMGETSGTGVAFTRNPSTGEKGLFGEFLINAQGEDVVAGIRTPQPITAMEADMPDVYKELLDIAEKLEGHYRD 316 (856)
T ss_pred EEEeecCCCCCCceeEEEEeCCCCCCCCcceEEEEEcCCCchhcccccCcHHHHHhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998889999999999999999999999888778899999999999999999999
Q ss_pred ccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcccchhhhhcCCCC
Q 039683 429 MMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPA 508 (983)
Q Consensus 429 ~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vl~~G~~~ 508 (983)
||||||+++++++||||+||.++++.++++++++++.+|+++.++++.++++.+++++++|.+.... ...++.+|+++
T Consensus 317 pqDIEfai~~g~L~iLQ~RP~krt~~aa~~~a~d~~~eg~i~~~ea~~~v~~~~l~~~l~~~~~~~~--~~~~l~~G~~a 394 (856)
T TIGR01828 317 MQDIEFTIERGKLYMLQTRNGKRTAKAAVRIAVDMVKEGLITEEEAIMRVEPKSLDQLLHPRFDPSA--LKTVLAKGLPA 394 (856)
T ss_pred cccceEEEECCEEEEEEeecCCCchHHHHHHHHHHHhccCCCHHHHHhccCHHHHHHhccccccccc--ccceeecCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999886432 22578999999
Q ss_pred CCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEeccCcccccc
Q 039683 509 SPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVND 588 (983)
Q Consensus 509 s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~ 588 (983)
|+|+++|+|++..+++..+.+.++++|||+++++|+|+..|+++.||||+.||.|||+||+||++|||||+||.++++|.
T Consensus 395 spG~a~G~v~~~~~~a~~~~~~~~~~ILV~~~t~P~d~~~~~~a~Givt~~GG~tSHaAivAR~lgiP~VvG~~~~~id~ 474 (856)
T TIGR01828 395 SPGAATGKIVFSAEDAVELAEKGKKVILVREETSPEDIEGMHVAEGILTARGGMTSHAAVVARGMGKCCVSGCEELKINE 474 (856)
T ss_pred CCCeEEEEEEEchHHHHHHhhcCCCEEEEECCCCHHHHhhhhhheEEEEccCCCcchHHHHHHHcCCCEEEccccccccc
Confidence 99999999999987777666678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHHHHHHHhhhhhceEEEecCCChHhHHHHHHcCCCccc
Q 039683 589 NEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGIG 668 (983)
Q Consensus 589 ~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~v~aNi~~p~d~~~a~~~ga~GIG 668 (983)
.++++++++..+++||+|||||++|.||.|+.+...+.+...+..+..|.+..++++|++|+++|+|++.+.++||+|||
T Consensus 475 ~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~~~~~~~~~~~~~~~l~~~~~~~~~i~v~aN~~~~~da~~a~~~Ga~GIG 554 (856)
T TIGR01828 475 EAKTFTIGGRVFHEGDIISIDGSTGEIYLGEIPLIEPSVSGDFETIMDWADKIRKLKVRANADTPEDALTARKFGAEGIG 554 (856)
T ss_pred ccceeeeCCeEecCCCEEEEECCCCEEEECCCccchHHHHHHHHHHHhhhcCCceEEEEEcCCCHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999999999887777766777888898888999999999999999999999999999
Q ss_pred cchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcCCCcEEEEecCCCCCCCCCCCchHHHHH
Q 039683 669 LCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVN 748 (983)
Q Consensus 669 L~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~~~pVtiR~lD~~~~eflp~~~~~~~~~ 748 (983)
||||||||++.+ ++|.++.|++++++++|+++|++|.++|+++|++|+++|.|+||||||||+|+|||||+. ++.++
T Consensus 555 L~RTE~mf~~~~-~~p~~~~~i~a~~eeer~~~l~~l~~~q~~~~~~i~~~~~~~pVtiR~lD~pl~eflp~~--~~~~~ 631 (856)
T TIGR01828 555 LCRTEHMFFGAE-RIPAVRKMILADSEEERQKALNKLLPFQKEDFKGLFKAMEGLPVTIRLLDPPLHEFLPHT--EELQK 631 (856)
T ss_pred ehhCchhhhcCC-CCcchhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccCccccccCCch--hhHhH
Confidence 999999999987 899999999999999999999999999999999999999999999999999999999994 56777
Q ss_pred HHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHH
Q 039683 749 ELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGH 828 (983)
Q Consensus 749 ~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~ 828 (983)
++..+++.+..++++.+..++|.||||||||||++|.||++|++|+|||+||+..+.++|...+++||||||++++|+++
T Consensus 632 ~~g~dk~~~~~~~~~~~~~~~E~NP~LG~RGiRl~l~~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~ 711 (856)
T TIGR01828 632 ELAEDMGLTLAEILKRVEELHEVNPMLGHRGCRLGITYPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKI 711 (856)
T ss_pred HhhhhcCCchhhhhhhccCCCCCCCccccchhhhccCChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHH
Confidence 77766665555566667778999999999999999999999999999999999988777876689999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCC
Q 039683 829 QISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQ 908 (983)
Q Consensus 829 ~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~ 908 (983)
+++.++++.+++..+.|.++++++|+|||||+|++.+|+|++++||||||||||||||||+||+|..+|...|.++||++
T Consensus 712 ~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~ 791 (856)
T TIGR01828 712 LKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILE 791 (856)
T ss_pred HHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCccc
Confidence 99999999988876667777799999999999999999999999999999999999999999999877899999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCchHH
Q 039683 909 SDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPI 973 (983)
Q Consensus 909 ~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~i~~ 973 (983)
.|||+.+|+|+|+++|++++++|+++|+|++||||||+++||..+++|+++|+|+|||+|..||+
T Consensus 792 ~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE~a~dp~~i~~l~~~Gi~~~S~sp~~vp~ 856 (856)
T TIGR01828 792 KDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGEHGGDPSSIEFCHKIGLNYVSCSPYRVPI 856 (856)
T ss_pred CCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCCCcCCHHHHHHHHHCCCCEEEEChhhccC
Confidence 99999999999999999999999988899999999999999999999999999999999999874
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=2.8e-126 Score=1164.13 Aligned_cols=707 Identities=29% Similarity=0.408 Sum_probs=575.3
Q ss_pred eEEEccCCCccCCccCccccCHHHHhHHHHHh----CCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHH
Q 039683 112 RVFTFGKGRSEGNKGMKSLLGGKGANLAEMST----IGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKE 187 (983)
Q Consensus 112 ~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~----~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~ 187 (983)
||+|| ++....+...+|||++||++|.+ .|+|||||||||+++|++|++. +++.++|.+.++.++.
T Consensus 1 ~~~~l----~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~-----~~l~~~i~~~l~~~~~- 70 (782)
T TIGR01418 1 LILWL----EEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEE-----NGIAQKIRDLLEELDV- 70 (782)
T ss_pred Ceeeh----hhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHh-----CChHHHHHHHHHhcCc-
Confidence 58899 78888999999999999999998 8999999999999999999997 4778888766654421
Q ss_pred hccccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCCchhHHHHHHHHhhccCcccccCcchHHHHH
Q 039683 188 MGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPHSLFEEKL 267 (983)
Q Consensus 188 ~~~~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l 267 (983)
+++..+...+. .++++|++.++|+++.++|. ++|.++...+|.
T Consensus 71 --------~~~~~l~~~~~------~ir~~i~~~~lP~~l~~~l~---------~a~~~l~~~~g~-------------- 113 (782)
T TIGR01418 71 --------EDSEALAAASA------EIRELILNTPFPPDLEEAIR---------EAYDKLSEDYGK-------------- 113 (782)
T ss_pred --------CCHHHHHHHHH------HHHHHHHcCCCCHHHHHHHH---------HHHHHhhhhcCC--------------
Confidence 12222333332 39999999999999999985 233333222221
Q ss_pred HHHHhhcCccccCCCChhhH--HHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCC-CCC
Q 039683 268 EHMKEAKGVKLDTDLSASDL--KELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITG-LKG 344 (983)
Q Consensus 268 ~~~~~~~~vavrSs~~~ED~--~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~-~~~ 344 (983)
....++||||++.||+ .+|||+|.| ++++.|. ++|..|||+||+|+||+||+.||+++|+++ ..+
T Consensus 114 ----~~~~vaVRSSa~~ED~~~~SfAGq~~s-~l~v~~~-------~~l~~aik~v~aS~~~~rA~~Yr~~~g~~~~~~~ 181 (782)
T TIGR01418 114 ----EEADVAVRSSATAEDLPDASFAGQQET-YLNVTGE-------EEVLEHVKKCWASLFTDRAISYRVSQGFDHEKVA 181 (782)
T ss_pred ----cCceEEEECCCCCCCCCCCCcccceee-eecCCCH-------HHHHHHHHHHHHccCCHHHHHHHHHcCCChhhhC
Confidence 0236899999999997 468999996 5688775 899999999999999999999999999997 689
Q ss_pred ceEEEEEcccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhhhh------------------
Q 039683 345 TAVNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKS------------------ 406 (983)
Q Consensus 345 maV~VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~~~------------------ 406 (983)
|||+||+||.+++ ..|||+||+||.+|+++.+....+.|+||.+|+|.++||+|.+.+.
T Consensus 182 maVlVQ~mv~~~~---~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v~pD~~~v~r~~~~~~~~~i~~~~~~~k~ 258 (782)
T TIGR01418 182 IAVGVQKMVRSDL---GSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAVTPDEYVVFKPTLEQGKKAILERTLGSKK 258 (782)
T ss_pred eeEEEEEcccCCC---CceeEEEecCCCCCCCCeEEEEEccCCCcccccCCcCCeEEEEecccccccccceeeeeccccc
Confidence 9999999997652 2899999999999987432223446899999999999999864220
Q ss_pred ---------------------------cc-hHHHHHHHHHHHHHHHHhccccCcccccc--cCcEEEEEeecccccHHHH
Q 039683 407 ---------------------------YM-PEAYKELVENCEILERHYKDMMDIEFTVQ--ENRLWMLQCRSGKRTGKAA 456 (983)
Q Consensus 407 ---------------------------~~-p~~~~~La~~a~ilE~~~~~~qDiEf~~~--~~~l~ILQ~Rp~~~~a~~A 456 (983)
++ ++++++|++++..+|.||+.||||||+++ ++++||||+||++......
T Consensus 259 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~~l~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPit~~~~~~ 338 (782)
T TIGR01418 259 IKMVYDPDGGNVETKIVEVPEEERDAFSLSDEEILELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPETVQSRKK 338 (782)
T ss_pred eEEEEccCCCCcceEEEeCCHHHhhccCCCHHHHHHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeeccccccccc
Confidence 11 35789999999999999999999999998 8899999999986432110
Q ss_pred HHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcccchhhhhcCCCCCCCcEEEEEE--cChhHHHHHHhcCCCe
Q 039683 457 VKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPASPGAAVGQVV--FSAEDAEAWHAQGKSA 534 (983)
Q Consensus 457 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vl~~G~~~s~G~a~G~v~--~~~~~~~~~~~~~~~~ 534 (983)
- ....+. +... ...++.+|+++++|.++|+|+ ++.++ +...+++.
T Consensus 339 ~--------------~~~~~~-----------~~~~-----~~~~l~~G~~~~~G~~~G~v~v~~~~~d---~~~~~~g~ 385 (782)
T TIGR01418 339 K--------------EAVEER-----------YELK-----GGKVLVTGRAAGPGIASGKVKVIFDLKE---MDKFEEGD 385 (782)
T ss_pred h--------------hhhhhh-----------cccc-----ccceeecCcccCCCceEEEEEEeCCHHH---HHhcCCCe
Confidence 0 000000 0000 124678999999999999965 44433 45678999
Q ss_pred EEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEeccCccccccCCceEEeccEEeeCCCEEEEECCc--
Q 039683 535 ILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGST-- 612 (983)
Q Consensus 535 ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~-- 612 (983)
|||+++++|+|++.|++++||||+.||.|||+||+||++|||+|+|+.+++ ..+++|+.|||||++
T Consensus 386 ILV~~~~~p~~~~~l~~~~giVte~Gg~tSH~AivAR~lgIPavvg~~~~~------------~~l~~G~~v~vDg~~~~ 453 (782)
T TIGR01418 386 ILVTDMTDPDWEPAMKRASAIVTNEGGMTCHAAIVARELGIPAVVGTGDAT------------KTLKDGMEVTVDCAEGD 453 (782)
T ss_pred EEEECCCCHHHHHHhHhheEEEEcCCCCccHHHHHHHhcCCCEEEcccchh------------hcccCCCEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999987 789999999999999
Q ss_pred -cEEEEcCCCCCCCCccchHHHHHHHhhhhhceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhh
Q 039683 613 -GEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIM 691 (983)
Q Consensus 613 -G~V~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~ 691 (983)
|.||.|+.+.. ......+....++++|++|+++|+|+..+.++||+|||||||||||++.....| ..++.
T Consensus 454 ~G~v~~~~~~~~-------~~~~~~~~~~~~~~~l~~Ni~~~~~~~~~~~~ga~GiGL~RtE~l~~~~~~~~p--~~~~~ 524 (782)
T TIGR01418 454 TGYVYAGKLEHE-------VKEVELSNMPVTATKIYMNVGNPEVAFRFAALPNDGVGLARIEFIILNWIGKHP--LALID 524 (782)
T ss_pred CcEEEeCCcHHH-------HHHHhhccCCCceEEEEecCCCHHHHHHHHhCCCceEEEccchhhhhcccccCh--hhhhh
Confidence 99999986321 111112222246899999999999999999999999999999999998521233 33455
Q ss_pred cCCHHHHHHHH-------HhhchhHHHHHHHHHHHcCCCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhh
Q 039683 692 AVTPEQRKAAL-------DLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSR 764 (983)
Q Consensus 692 ~~~ee~~~~~l-------~~l~~~q~~~y~~i~~a~~~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~ 764 (983)
.|+|+++.+.+ +....+|++.|++++++|.|+||||||||+++|||++ ..|+++.
T Consensus 525 ~p~e~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~pV~iRtlD~~~dk~~~-------------~~ggdk~----- 586 (782)
T TIGR01418 525 DDDLESVEKEELTAGGPRDFFVDKLAEGIAKVAAAFYPKPVIVRTSDFKSNEYRN-------------LIGGEEY----- 586 (782)
T ss_pred CCCHHHHHHhhccccchhHHHHHHHHHHHHHHHHHcCCCeEEEEcCCCCccchhh-------------hhCCCcc-----
Confidence 67776543221 1223568999999999999999999999999999843 3575531
Q ss_pred hhccccCCCCCCCccccccCCC--hHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q 039683 765 IEKLSEVNPMLGFRGCRLGISY--PELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFS 842 (983)
Q Consensus 765 ~~~~~E~NP~LG~RGiR~~l~~--p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~ 842 (983)
.++|.||||||||||++|.+ |++|++|+|||+||..+. |. .+++||+|||+|++|++++++.+++
T Consensus 587 --~~~E~NP~LG~RGir~~l~~~~~~lf~~qlraI~ral~d~---G~-~~~~Im~PmV~s~eE~~~~~~~~~~------- 653 (782)
T TIGR01418 587 --EPDEENPMLGWRGASRYYSESYEEAFRLECRAIKRVREEM---GL-TNVEVMIPFVRTPEEGKRALEIMAE------- 653 (782)
T ss_pred --CCCCCCcccccchhhhhcccccHHHHHHHHHHHHHHHHhc---CC-CCeEEEecCCCCHHHHHHHHHHHHH-------
Confidence 46899999999999999976 999999999999997432 32 3689999999999999999977643
Q ss_pred HcCCCC---CceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHH
Q 039683 843 EMGSSL---DYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKG 919 (983)
Q Consensus 843 ~~g~~~---~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~a 919 (983)
.|... ++++|+|||||+|++++|+|++++|||||||||||||+||+||+|. ++... ++|+| |+
T Consensus 654 -~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~-~~~~~--------~~~~h----Pa 719 (782)
T TIGR01418 654 -EGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSG-LVAHL--------FDERN----PA 719 (782)
T ss_pred -hCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCch-hhccc--------CCCCC----HH
Confidence 23322 3899999999999999999999999999999999999999999997 44433 47777 79
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEcCCCCC-ChHHHHHHHHcCCCEEecCCCchHHHHHHhhhh
Q 039683 920 VGQLIKIATERGRAARPSLKVGICGEHGG-EPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 920 V~~lI~~~~~~a~~~~~g~~v~iCGe~a~-~p~~~~~l~~lG~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
|.++|++++++|++ +||++|+|||+++ +|..+++|+++|+++|||+++.++.+|.++++.
T Consensus 720 V~~~i~~vi~~a~~--~g~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d~~~~~k~~i~~~ 780 (782)
T TIGR01418 720 VLRLIEMAIKAAKE--HGKKVGICGQAPSDYPEVVEFLVEEGIDSISLNPDAVLRTRLQVAEV 780 (782)
T ss_pred HHHHHHHHHHHHHh--cCCeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcchHHHHHHHHHHh
Confidence 99999999999997 6999999999998 999999999999999999999999999999875
No 4
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=3.4e-126 Score=1162.16 Aligned_cols=705 Identities=27% Similarity=0.386 Sum_probs=574.9
Q ss_pred cceEEEccCCCccCCccCccccCHHHHhHHHHHh----CCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHH
Q 039683 110 EKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMST----IGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVE 185 (983)
Q Consensus 110 ~~~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~----~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le 185 (983)
.++++|| ++....+...+|||++||++|.+ .|+|||+|||||+++|++|++. +++.+.|.+.++.++
T Consensus 4 ~~~i~~l----~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~-----~~l~~~i~~~l~~~~ 74 (795)
T PRK06464 4 MKYVLWF----EELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQ-----TGLNEKIYELLDGLD 74 (795)
T ss_pred Cceeeeh----hHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHh-----CChHHHHHHHHhhcC
Confidence 4699999 78889999999999999999999 8999999999999999999998 478888877776552
Q ss_pred HHhccccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCCchhHHHHHHHHhhccCcccccCcchHHH
Q 039683 186 KEMGALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPHSLFEE 265 (983)
Q Consensus 186 ~~~~~~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~~~a~d~~~rl~~~~g~~~~~v~~~~f~~ 265 (983)
. ..+..+...+. .++++|++.++|+++.++|. ++|+++...+|
T Consensus 75 ~---------~d~~~l~~~~~------~ir~~i~~~~~P~~l~~~l~---------~a~~~l~~~~g------------- 117 (795)
T PRK06464 75 V---------DDVDALAKAGA------QIRQLIIDTPFPPDLEQEIR---------EAYAKLSAGYG------------- 117 (795)
T ss_pred c---------CCHHHHHHHHH------HHHHHHHcCCCCHHHHHHHH---------HHHHHHhcccC-------------
Confidence 1 12222222332 49999999999999999985 23333321111
Q ss_pred HHHHHHhhcCccccCCCChhhH--HHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCC-C
Q 039683 266 KLEHMKEAKGVKLDTDLSASDL--KELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITG-L 342 (983)
Q Consensus 266 ~l~~~~~~~~vavrSs~~~ED~--~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~-~ 342 (983)
...++||||++.||+ .+|||+|.| ++++.|. ++|..|||+||+|+||+||+.||+++|+++ +
T Consensus 118 -------~~~vaVRSSa~~ED~~~~SfAGq~~t-~l~v~~~-------~~l~~AIk~v~aS~~~~rA~~YR~~~gi~~~~ 182 (795)
T PRK06464 118 -------EASVAVRSSATAEDLPDASFAGQQET-FLNVRGI-------DDVLEAVKECFASLFTDRAISYRVHQGFDHFK 182 (795)
T ss_pred -------CceEEEECCCcccCCCCCCCCCccce-ecCCCCH-------HHHHHHHHHHHHccCCHHHHHHHHHcCCCchh
Confidence 246899999999997 478999997 5688775 899999999999999999999999999997 6
Q ss_pred CCceEEEEEcccCCCCCccceEEEEecCCCCCCcc-eeeEEEEeccccceecccccccchhhhhh---------------
Q 039683 343 KGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGENK-LYGEFLINAQGEDVVAGIRTPEDLNTMKS--------------- 406 (983)
Q Consensus 343 ~~maV~VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~-~~ge~~i~~~Ge~vVsG~~~pd~~~~~~~--------------- 406 (983)
.+|||+||+||.++. ..|||+||+||.||++. ++.+ ...|+||.+|+|.++||+|.+.+.
T Consensus 183 ~~mAVlVQ~Mv~a~~---~~SGV~fT~dP~~g~~~~~~I~-a~~GlGe~vVsG~v~pd~~~v~~~~~~~~~~~i~~~~i~ 258 (795)
T PRK06464 183 VALSAGVQKMVRSDL---AASGVMFTLDTESGFRDVVFIT-ASWGLGEMVVQGAVNPDEFYVHKPTLKAGKPAIVRRTLG 258 (795)
T ss_pred cceeEEEEEccCCCc---CceEEEEecCCCCCCCCeEEEE-EccCCCcccccCCccCeEEEEecccccccccceeeeecc
Confidence 899999999998742 38999999999999754 3333 345899999999999999864221
Q ss_pred -------------------cc-----------hHHHHHHHHHHHHHHHHhccccCccccccc--CcEEEEEeecccccHH
Q 039683 407 -------------------YM-----------PEAYKELVENCEILERHYKDMMDIEFTVQE--NRLWMLQCRSGKRTGK 454 (983)
Q Consensus 407 -------------------~~-----------p~~~~~La~~a~ilE~~~~~~qDiEf~~~~--~~l~ILQ~Rp~~~~a~ 454 (983)
.+ ++++++|++++..+|.||+.||||||++++ +++||||+||++....
T Consensus 259 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit~~~~ 338 (795)
T PRK06464 259 SKKIKMVYDDGGEHGVKTVDVPEEERNRFSLTDEEVLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPETVKSR 338 (795)
T ss_pred ccceeeeeccCCCCceeEEeCCHHHhhccCCCHHHHHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccccccc
Confidence 01 347899999999999999999999999986 9999999999874322
Q ss_pred HHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcccchhhhhcCCCCCCCcEEEEEE--cChhHHHHHHhcCC
Q 039683 455 AAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPASPGAAVGQVV--FSAEDAEAWHAQGK 532 (983)
Q Consensus 455 ~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vl~~G~~~s~G~a~G~v~--~~~~~~~~~~~~~~ 532 (983)
.+ +..... +... ....++.+|+++++|.++|+++ ++.++ +.+.++
T Consensus 339 ~~---------------~~~~~~-----------~~~~----~~~~~l~~G~~~~~G~~~G~v~v~~~~~~---~~~~~~ 385 (795)
T PRK06464 339 KE---------------ANVLER-----------YKLK----GQGKVLVEGRAIGPGIGSGKVRVILDISE---MDKVQP 385 (795)
T ss_pred cc---------------hhhhhc-----------cCcc----ccCceeeeCcccCCCceeeEEEEeCCHHH---HHhcCC
Confidence 11 000000 0000 0124678999999999999975 44333 345678
Q ss_pred CeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEeccCccccccCCceEEeccEEeeCCCEEEE---E
Q 039683 533 SAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSL---N 609 (983)
Q Consensus 533 ~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~Vtl---D 609 (983)
+.|||+++++|+|+..+.++.||||+.||.|||+||+||++|||+|+|+++++ ..+++|+.||| |
T Consensus 386 g~ILV~~~~~p~~~~~l~~~~givt~~Gg~tSH~AilAR~lgIPavvg~~~~~------------~~l~~G~~v~v~~~D 453 (795)
T PRK06464 386 GDVLVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGTGNAT------------EVLKDGQEVTVSCAE 453 (795)
T ss_pred CeEEEECCCCHHHHHHHHhheEEEEcCCCCcchHHHHHHHcCCCEEEccCccc------------ceecCCCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999877 78999999999 9
Q ss_pred CCccEEEEcCCCCCCCCccchHHHHHHHhhhhhceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHH
Q 039683 610 GSTGEVILGKQPLAPPAMSGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKM 689 (983)
Q Consensus 610 g~~G~V~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~ 689 (983)
|++|.||.||.+..... ...... ..++++|++|+++|+|++.+.++||+|||||||||||++.....|. ..+
T Consensus 454 g~~G~v~~~~~~~~~~~-----~~~~~~--~g~~~~l~aNi~~~~~~~~a~~~ga~GiGL~RtE~l~~~~~~~~~~-~~~ 525 (795)
T PRK06464 454 GDTGYVYEGLLEFEVEE-----VSLEEM--PETPTKIMMNVGNPERAFDFAALPNDGVGLARLEFIINNMIGVHPL-ALL 525 (795)
T ss_pred CCCcEEEeCCchhhhhh-----hhhhcC--CCcceEEEEcCCCHHHHHHHHhcCCCeEeehhhhHHHhhhcccchh-hhh
Confidence 99999999998642211 011111 1478999999999999999999999999999999999984211121 111
Q ss_pred hh--cCCHHHHHHHHHhhc-----------hhHHHHHHHHHHHcCCCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCC
Q 039683 690 IM--AVTPEQRKAALDLLL-----------PYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGM 756 (983)
Q Consensus 690 ~~--~~~ee~~~~~l~~l~-----------~~q~~~y~~i~~a~~~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~ 756 (983)
.. .|+| ++++|++++ ..|++.|++++++|.|+||||||||+++||| +.+.|+
T Consensus 526 ~~~~~p~e--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~iRtlD~~~~~~-------------~~l~Gg 590 (795)
T PRK06464 526 EFDQQDAD--LKAEIEELTAGYASPEEFYVDKLAEGIATVAAAFYPKPVIVRLSDFKSNEY-------------ANLIGG 590 (795)
T ss_pred cccCCcHH--HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCCchhhh-------------HHhccC
Confidence 11 1343 345566654 4578999999999999999999999999886 456786
Q ss_pred ChhhhhhhhhccccCCCCCCCccccccCCCh--HHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHH
Q 039683 757 SEDEVFSRIEKLSEVNPMLGFRGCRLGISYP--ELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIR 834 (983)
Q Consensus 757 ~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p--~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~ 834 (983)
|+. .++|.||||||||||+++.+| ++|++|+|||+||.... |. .+++||+|||++++|++++++.++
T Consensus 591 dk~-------~~~E~NP~LG~RGiR~~l~~p~~~lf~~qlraI~rald~~---G~-~~~~ImvPmV~s~eEa~~~~~~~~ 659 (795)
T PRK06464 591 ERY-------EPEEENPMLGFRGASRYLSESFREAFALECEAIKRVREEM---GL-TNVEVMIPFVRTVEEAEKVIELLA 659 (795)
T ss_pred CcC-------CCCCCCCccccchhhhcccCchHHHHHHHHHHHHHHHHhc---CC-CCeEEEecCCCCHHHHHHHHHHHH
Confidence 541 468999999999999999999 99999999999996532 32 468999999999999999998765
Q ss_pred HHHHHHHHHcCCCC---CceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCC
Q 039683 835 NVATKVFSEMGSSL---DYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDP 911 (983)
Q Consensus 835 ~~~~~~~~~~g~~~---~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p 911 (983)
+ .|... ++++|+|||||+|++++|+|++++||||||||||+||+||+||+|. .+... ++|
T Consensus 660 ~--------~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq~~lg~dR~n~-~v~~~--------~~~ 722 (795)
T PRK06464 660 E--------NGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQLTLGLDRDSG-LVAHL--------FDE 722 (795)
T ss_pred H--------hCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHHHHhCcCCCch-hhhhc--------cCC
Confidence 3 23322 5899999999999999999999999999999999999999999997 33333 477
Q ss_pred cccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCC-hHHHHHHHHcCCCEEecCCCchHHHHHHhhhh
Q 039683 912 FEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGE-PSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 912 ~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~-p~~~~~l~~lG~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
+| |+|+++|++++++|++ +||++++|||++++ |..+++|+++|+++|||+|+.++.+|.++++.
T Consensus 723 ~h----Pav~~ai~~vi~aa~~--~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d~~~~~k~~i~~~ 787 (795)
T PRK06464 723 RN----PAVKKLISMAIKAAKK--AGKYVGICGQAPSDHPDFAEWLVEEGIDSISLNPDAVVDTWLAVAEV 787 (795)
T ss_pred CC----HHHHHHHHHHHHHHHH--cCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcchhHHHHHHHHHHh
Confidence 77 7999999999999997 69999999999999 99999999999999999999999999999875
No 5
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-102 Score=950.79 Aligned_cols=693 Identities=34% Similarity=0.473 Sum_probs=566.4
Q ss_pred ceEEEccCCCccCCccCccccCHHHHhHHHHHhCCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHHhcc
Q 039683 111 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKEMGA 190 (983)
Q Consensus 111 ~~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~~~~ 190 (983)
.++.+| .+.+..+..++|||++||++|.++|+|||||||||+++|+.|++.+ ++.+.+.+.+..++
T Consensus 3 ~~~~~~----~e~~~~~~~lvGgKga~L~Em~~~Gl~VP~GF~itt~a~~~f~~~~-----~~~~~~~~~l~~~~----- 68 (740)
T COG0574 3 NLILWL----DEVKLEDVGLVGGKGASLGEMLKMGLPVPPGFAITSEAYRYFLKEN-----GLADKILKILSALD----- 68 (740)
T ss_pred ccccch----hhcCcchhhhcCCccCCHHHHHhCCCCCCCeEEEeHHHHHHHHhcc-----chHHHHHHHhcCCC-----
Confidence 478888 7888999999999999999999999999999999999999999873 66677766555331
Q ss_pred ccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCCchhHHHHHHHHhhccCcccccCcchHHHHHHHH
Q 039683 191 LLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHM 270 (983)
Q Consensus 191 ~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l~~~ 270 (983)
.+ ++.++++.+..+++ .++..++|+++.+++. ++|..+ ..++.
T Consensus 69 -----~~-~~~~l~~~~~~~~~----~i~~~~~p~~l~~ei~---------~al~~~-~~~~~----------------- 111 (740)
T COG0574 69 -----LN-DNVELEFRSELIRP----LIMPTPLPEDLSAEIA---------EALEEL-TGYGD----------------- 111 (740)
T ss_pred -----cc-hhHHHHHHHHHHHh----hhccCCCChHHHHHHH---------HHHHHh-ccccc-----------------
Confidence 12 33466776655455 4555555555555553 223222 11110
Q ss_pred HhhcCccccCCCChhhH--HHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCC-CCCceE
Q 039683 271 KEAKGVKLDTDLSASDL--KELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITG-LKGTAV 347 (983)
Q Consensus 271 ~~~~~vavrSs~~~ED~--~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~-~~~maV 347 (983)
....+++|||+++||+ .+|+||+. +|+|+.|. ++++.+++.||+||||+||+.||.++|+++ .++|||
T Consensus 112 -~~~~~avrss~taedL~~~sFagq~~-t~lni~~~-------e~l~~~i~~~~aSl~~~RAi~Yr~~~~~~~~~~~laV 182 (740)
T COG0574 112 -SDADVAVRSSATAEDLPGASFAGQQE-TYLNVDGI-------EDLLEAIKKCWASLFVDRAIAYRYHNGIDHSELGLAV 182 (740)
T ss_pred -cceeEEEeeccccccCCccccccccc-ccCCcCCH-------HHHHHHHHHHHHhhcchhHHHHHHHcCCcchhhceEE
Confidence 1357999999999998 56999876 45566554 999999999999999999999999999998 599999
Q ss_pred EEEEcccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhhh-----hc---------------
Q 039683 348 NIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMK-----SY--------------- 407 (983)
Q Consensus 348 ~VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~~-----~~--------------- 407 (983)
+||.||+++++ .|||+||+||.||+++.++++..+|+||++|+|.++||.|.+.+ ..
T Consensus 183 ~VQ~MV~~~~~---~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~vtpd~~~~~k~~~~~~~~~~~~~~~i~~~~~~ 259 (740)
T COG0574 183 VVQKMVFSDLG---ESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQVTPDEYYVSKDTLVEKALPSKLIKLIYDADKL 259 (740)
T ss_pred EEeeeeccCCC---ceeEEEecCCccCCcceEEEEccccCccceEEEEEcCceEEEeccchhhhhhhHHHHHHHHHhhcc
Confidence 99999999875 89999999999999988888999999999999999999987433 11
Q ss_pred ---------ch-----------HHHHHHHHHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhh
Q 039683 408 ---------MP-----------EAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEG 467 (983)
Q Consensus 408 ---------~p-----------~~~~~La~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~ 467 (983)
++ ..+.++++++..+|.||+.|||+||+.++ +.|+||+||++..-.
T Consensus 260 e~~~~~~~ev~~~~~~~~~l~~~~i~~la~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~t~~~~------------- 325 (740)
T COG0574 260 EGHRARIEEIEDEFTDAFSLSDEEIKRLAKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPETVLSL------------- 325 (740)
T ss_pred cceeeeeccCChHHhhhhhccHHHHHHHHHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCcccccc-------------
Confidence 11 25689999999999999999999999998 889999999863210
Q ss_pred hcchHHHhhccChHhhhhhcCCCCCCCcccchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHh
Q 039683 468 LVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIG 547 (983)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~ 547 (983)
.++.... ...+..|.++++|+++|++.+..+..+. .+..++.|||+..++|+|++
T Consensus 326 -------------------~~~~~~~-----~~~~~~g~ga~~g~~~G~v~~~~d~~e~-~~~~~g~iLv~~~t~pd~~~ 380 (740)
T COG0574 326 -------------------LHPVEDR-----GRALLKGIGASPGIASGRVKIILDVSEM-EKLEHGDILVTPMTDPDWVP 380 (740)
T ss_pred -------------------ccccccc-----ccceeeeeeccCCceeEEEEEEecHHHh-cccccCceEEeecCCHHHhh
Confidence 1111100 1234467779999999998766544333 45568899999999999999
Q ss_pred hhhhhceEEEccCCccchHHHhhcccCceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCc
Q 039683 548 GMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAM 627 (983)
Q Consensus 548 ~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~ 627 (983)
.|+.+.||||.+||+|||+||+||++|+|||||+..++. ....+++|+.+++||.+|.||.|......+.
T Consensus 381 ~m~~a~~Ivt~~Gg~tshaaivaRe~g~Pavvg~~~~~~---------~~~~~~~~~i~~~dG~~g~v~~g~~~~~~~~- 450 (740)
T COG0574 381 LMKVAGAIVTDRGGMTSHAAIVARELGIPAVVGTGSATK---------ILKTLKDGTIVTLDGITGAVYAGRLLEEEET- 450 (740)
T ss_pred hhhhccceEEcCCCccccchhhhhhcCCCeEEcCchhhh---------hhhhcccceEEEecCcceeEeccchhhhhhh-
Confidence 999999999999999999999999999999999999873 2246799999999999999999965433222
Q ss_pred cchHHHHHHHhhhhhceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhch
Q 039683 628 SGDLEIFMSWADEIRRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLP 707 (983)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~ 707 (983)
+..|....+..+|+.|+++|++++.+. ++++||||+|||||++... +++..+.|++....++ .+.+
T Consensus 451 ------~~~~~~~~~~~~v~~n~~~p~~a~~~~-~~a~gigl~r~e~~~~~~~-~~~~~~~~~l~~~~~~------~~~~ 516 (740)
T COG0574 451 ------LELSALPITTTKVRMNLGNPEDAEEAA-FGADGIGLARTEHMILSEI-RIHPMALMELDKLKED------FYVD 516 (740)
T ss_pred ------hhhcccccchhHHHhcCCCHHHHHhhh-ccccchhhhhHHHHhhhcc-ccCcceeehhccccHH------HHHH
Confidence 444555667889999999999999999 7799999999999999876 5655666666444332 5667
Q ss_pred hHHHHHHHHHHHcCCCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCCh
Q 039683 708 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYP 787 (983)
Q Consensus 708 ~q~~~y~~i~~a~~~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p 787 (983)
.|.+.+..++++|.++||+||++|+++||+ .++ .... ++|.||||||| ...+||
T Consensus 517 ~~~e~i~~~~~~~~~~pv~irl~d~~~~E~----------------~~~------~~~~-~~e~npmlG~R---~~~~y~ 570 (740)
T COG0574 517 KLAEGIALIAKAFYPKPVVVRLSDFKLNEL----------------KGG------EEYE-PKEENPMLGFR---GASRYP 570 (740)
T ss_pred HHHhhHHHHHHHhcCCCEEEEcCCCCcchh----------------hhc------cccc-ccccCchhhhh---cccccc
Confidence 789999999999999999999999998862 121 1223 78999999999 567899
Q ss_pred HHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHH
Q 039683 788 ELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADE 867 (983)
Q Consensus 788 ~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ 867 (983)
+++.+|++||..++....+++...++.+|+|++.+.+|..+.. ... . ...+... +++|+|||+|++++.+++
T Consensus 571 e~~~~~~~~i~~~a~~~~~~~~~~~~~~mip~~~~~~e~~~~~-~~~--~----~~~~~~~-~~~~~m~e~P~~~~~~~e 642 (740)
T COG0574 571 EIYYREAFALECRAIKLVEEMGLTNVEIMIPFVRTEEEREKVI-ILE--E----GLKRGKN-YKVGQMIELPSAALLADE 642 (740)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCcEEEccccccHHHHHHHH-HHh--h----hhcccce-EEEEEEeecchHHhhhHh
Confidence 9999999999999988776677788999999999999998877 443 1 1222334 899999999999999999
Q ss_pred HHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCC
Q 039683 868 IAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHG 947 (983)
Q Consensus 868 ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a 947 (983)
|++.+||||||||||||+++|+||+|. . .+..+ |+|.++|.++++.|+.+ ++.+||||+++
T Consensus 643 ~~~~~d~~S~gtndltq~tlg~~rd~~-----~--------~~~~~----~~v~~li~~a~~~~~~~--~~~~~icG~~~ 703 (740)
T COG0574 643 IAEYFDGFSIGSNDLTQLTLGLDRDSE-----L--------FDERD----PAVLKLIIIAIKAADSG--GLLVGICGQAP 703 (740)
T ss_pred HHhhcccceecccccccceeeeecccc-----c--------ccccc----ccHHHHHHHHHhccccc--CcEEEEeccCC
Confidence 999999999999999999999999985 1 23434 69999999999999984 79999999999
Q ss_pred CChHHHHHHHHcCCCEEecCCCchHHHHHHhhhhc
Q 039683 948 GEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVA 982 (983)
Q Consensus 948 ~~p~~~~~l~~lG~~~~Sv~p~~i~~~r~a~a~~~ 982 (983)
++|+.+.++.+.|+++||++|+.++.+++++||.-
T Consensus 704 ~~p~~a~~~~e~Gi~~Vs~np~~v~~~~~~ia~~~ 738 (740)
T COG0574 704 SDPHGAIFLVELGIDSVSLNPDSVLKAGLAVAQDE 738 (740)
T ss_pred CCcHHHHHHHHcCCCeEecCchhhhhhHHHHHHhc
Confidence 99999999999999999999999999999999863
No 6
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-101 Score=877.84 Aligned_cols=456 Identities=31% Similarity=0.482 Sum_probs=400.9
Q ss_pred HHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcc
Q 039683 417 ENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSA 496 (983)
Q Consensus 417 ~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 496 (983)
+.+.||+.|..++.|+||..+.... ++..+.++++|++.+.+.++..|..++++|+++|..|++|+.+
T Consensus 69 ~~~aIf~aH~~ll~D~~L~~~~~~~----I~~~~~~A~~A~~~~~~~~~~~~~~~~d~yl~eRa~DirDv~~-------- 136 (574)
T COG1080 69 EKAAIFEAHLMLLEDPELTEEAEEL----IRQGKVSAEYALKEVIEEFAAQFEALDDEYLKERAADIRDVGK-------- 136 (574)
T ss_pred hhHHHHHHHHHHhcCHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------
Confidence 4558999999999999998764332 3677799999999999999999999999999999999999974
Q ss_pred cchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhh--hhceEEEccCCccchHHHhhcccC
Q 039683 497 YKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMH--AAAGILTARGGMTSHAAVVARGWG 574 (983)
Q Consensus 497 ~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~--~a~GiVt~~Gg~tSHaAIvAR~lg 574 (983)
+++..-.+. . .. ++....+++|||+++++|||+..++ .+.||||+.||.|||+||+||++|
T Consensus 137 ---Rvl~~L~g~-~-------~~------~~~~~~~~~IlvA~dLtPSdta~l~~~~v~Gfvt~~GG~TSHtAImARsl~ 199 (574)
T COG1080 137 ---RVLRHLLGQ-E-------IP------DLGAIDEEVILVAEDLTPSDTAQLDKKYVKGFVTDIGGRTSHTAILARSLG 199 (574)
T ss_pred ---HHHHHHcCC-C-------CC------CcccCCCCeEEEECCCCHHHHhhcCHhhceeeEecCCCcccHHHHHHHhcC
Confidence 444332211 0 00 1223457899999999999999997 489999999999999999999999
Q ss_pred ceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHH-------HHHHHhh------hh
Q 039683 575 KCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLE-------IFMSWAD------EI 641 (983)
Q Consensus 575 IP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~-------~~~~~~~------~~ 641 (983)
||+|||+++.+ ..+++|+.|+|||.+|.|+.+|++.....|..... ++..+.+ +.
T Consensus 200 IPavVg~~~~~------------~~v~~g~~viiDg~~G~vi~nP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~a~T~DG 267 (574)
T COG1080 200 IPAVVGLGAAT------------LAVKDGDTLILDGINGEVIVNPDEAVLQEYRAKQAAYAAEKAELAQLKDLPARTRDG 267 (574)
T ss_pred CCeeecCcHHh------------hcccCCCEEEEECCCCeEEECcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCC
Confidence 99999999987 67899999999999999999999866655542211 1111211 23
Q ss_pred hceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcC
Q 039683 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMD 721 (983)
Q Consensus 642 ~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~ 721 (983)
+++.|.+||++|.|++.+.++||+|||||||||+||+++ .+| ||+| |++.|++++++|+
T Consensus 268 ~~vev~ANIg~~~d~~~a~~~GaegVGLfRTEFLfm~r~-~~P---------~EeE-----------Q~~aY~~vlea~~ 326 (574)
T COG1080 268 HRVEVAANIGTPKDAEGAFANGAEGVGLFRTEFLFMDRD-ALP---------DEEE-----------QFEAYKAVLEAMG 326 (574)
T ss_pred ceEEEEecCCCHHHHHHHHhcCCceeehhHHHHHHhcCC-CCC---------ChHH-----------HHHHHHHHHHHcC
Confidence 679999999999999999999999999999999999997 555 8886 9999999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHH
Q 039683 722 GLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAA 801 (983)
Q Consensus 722 ~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa 801 (983)
|+||||||+|+|+ ||.++|+..|+|.||||||||||+++.+|++|++|||||+||+
T Consensus 327 g~pviiRTlDiGG------------------------DK~lpyl~lp~E~NPfLG~RaIRl~l~~~~if~tQLRAilRAS 382 (574)
T COG1080 327 GKPVIIRTLDIGG------------------------DKPLPYLNLPKEENPFLGYRAIRLSLERPEIFRTQLRAILRAS 382 (574)
T ss_pred CCceEEEecccCC------------------------CCcCCCCCCccccCchhhhHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999999999973 5678889999999999999999999999999999999999997
Q ss_pred HHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--CceEEEEEecHHHHHHHHHHHhhCCEEEEcc
Q 039683 802 VSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL--DYKVGTMIEIPRAALVADEIAKEAEFFSFGT 879 (983)
Q Consensus 802 ~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~--~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGt 879 (983)
. .++++||||||++++|++++++.++++..+++ ..|..+ .+++|+|||+|+|+++++.|++++|||||||
T Consensus 383 ~-------~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr-~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIGT 454 (574)
T COG1080 383 A-------HGNLRIMFPMIASLEEIRWAKALLEEAKQELR-AEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIGT 454 (574)
T ss_pred c-------cCCeEEEEeccccHHHHHHHHHHHHHHHHHHH-hcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeecc
Confidence 6 36799999999999999999999999988887 456666 6999999999999999999999999999999
Q ss_pred hhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHc
Q 039683 880 NDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEA 959 (983)
Q Consensus 880 NDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~l 959 (983)
|||||||||+||+|+ ++++.| ||+| |+|++||+++++.+++ +|||||+|||++|||..++.|++|
T Consensus 455 NDLtQYtLA~DR~n~-~vs~ly--------~pl~----PAVLrlI~~vi~~ah~--~gkwvgmCGElAgD~~a~plLlGl 519 (574)
T COG1080 455 NDLTQYTLAVDRGNA-KVSHLY--------DPLH----PAVLRLIKQVIDAAHR--HGKWVGMCGELAGDPAATPLLLGL 519 (574)
T ss_pred cHHHHHHHHHhcCCh-hhhhhc--------CCCC----HHHHHHHHHHHHHHHH--cCCeeeechhhccChhhHHHHHhc
Confidence 999999999999998 666665 8888 7999999999999997 699999999999999999999999
Q ss_pred CCCEEecCCCchHHHHHHhhhh
Q 039683 960 GLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 960 G~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
|+|+|||++.+|+.+|..+++.
T Consensus 520 GldElSms~~si~~vK~~i~~l 541 (574)
T COG1080 520 GLDELSMSAPSIPAVKARIRKL 541 (574)
T ss_pred CcchhccCchhHHHHHHHHHhc
Confidence 9999999999999999988775
No 7
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=3.7e-93 Score=831.28 Aligned_cols=484 Identities=42% Similarity=0.705 Sum_probs=448.7
Q ss_pred CcceEEEccCCCccCCccCccccCHHHHhHHHHHhCCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHHh
Q 039683 109 TEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKEM 188 (983)
Q Consensus 109 ~~~~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~~ 188 (983)
..+||++| ++....+..++|||++||++|+++|+||||||||||++|++|+++++.+|+++|++|.+.++.++..+
T Consensus 5 ~~~~v~~l----~~~~~~~~~~lGgK~a~L~em~~~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 5 LENAVVLL----DGGANQPRELLGGKGHGIDMMRRLGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred cCceEEEC----CCCChhhhhccCHHHHhHHHHHHCCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 56799999 67778889999999999999999999999999999999999999988899999999999999999999
Q ss_pred ccccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCC-chhHHHHHHHHhhccCcccccCcchHHHHH
Q 039683 189 GALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGG-RFAYDSYRRFLDMFGDVVMGIPHSLFEEKL 267 (983)
Q Consensus 189 ~~~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~-~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l 267 (983)
++.||++.+|++++|||+++.||||||++|+|.++|++++++|++.+|+ +||||+|+||+++|+
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~--------------- 145 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYR--------------- 145 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHH---------------
Confidence 9999999899999999999999999999999999999999999999997 999999988766654
Q ss_pred HHHHhhcCccccCCCChhhHHHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCCCCCceE
Q 039683 268 EHMKEAKGVKLDTDLSASDLKELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAV 347 (983)
Q Consensus 268 ~~~~~~~~vavrSs~~~ED~~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~~~~maV 347 (983)
+++ + .|.+||+||++||..||++||+||||+||+.||+++|++++.+|||
T Consensus 146 ----------------------------~vv-~-~~~~~p~dp~~qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~~mAV 195 (530)
T PRK05878 146 ----------------------------RIV-G-SGSPPPDDPYEQLRAAIEAVFASWNSPRAVAYRRHHGLDDDGGTAV 195 (530)
T ss_pred ----------------------------HHh-c-cCCCCCCChHHHHHHHHHHHHHHcCCHHHHHHHHHcCCCcccCcEE
Confidence 332 2 3788999999999999999999999999999999999998789999
Q ss_pred EEEEcccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhhhhcchHHHHHHHHHHHHHHHHhc
Q 039683 348 NIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTMKSYMPEAYKELVENCEILERHYK 427 (983)
Q Consensus 348 ~VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~~~~~p~~~~~La~~a~ilE~~~~ 427 (983)
+||+||+||+++.++|||+||+||.||+++.+++|.++|+||+||+|.++|+.|..+++..|+.+++|++++..||.||+
T Consensus 196 ~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~vVsG~~~p~~~~~~~~~~p~~~~eL~~~a~~LE~~fg 275 (530)
T PRK05878 196 VVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDVVSGLVDVAPITALRDEQPAVYDELMAAARTLERLGR 275 (530)
T ss_pred EEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHHhcCCcCCcchhhhcccCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999888999999999999999999999998888789999999999999999999
Q ss_pred cccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcccchhhhhcCCC
Q 039683 428 DMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLP 507 (983)
Q Consensus 428 ~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vl~~G~~ 507 (983)
.||||||+++++++||||+||.++++.++++++++++.+|.++.+++..++.+.+++++++|.+.........++.+|++
T Consensus 276 ~pqDIEfai~~g~L~iLQaRp~~r~~~aa~~~a~d~~~eG~i~~~ea~~~v~~~~~~~~l~p~~~~~~~~~~~~l~~G~~ 355 (530)
T PRK05878 276 DVQDIEFTVESGKLWLLQTRSAKRSAQAAVRLALQLHDEGLIDDAEALRRVTPTHVETLLRPSLQPEARLAAPLLAKGLP 355 (530)
T ss_pred CceeEEEEEECCEEEEEEeeccccccHHHHHHHHHHHhccCCCHHHHhhccCHHHHhhhcccccCcccccccceeccCee
Confidence 99999999999999999999999999999999999999999999999999999999999999876432112357899999
Q ss_pred CCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEeccCccccc
Q 039683 508 ASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVN 587 (983)
Q Consensus 508 ~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~ 587 (983)
+|+|+++|+|+++.++..++.+++++.|||+++++|+|+..|++++||||+.||.|||+||+||++|||||+|+.+..
T Consensus 356 as~G~a~G~V~~~~~~~~~~~~~~~g~ILV~~~t~P~~~~~~~~a~GIVte~Gg~tSHaAivARelgiP~VvG~~~~~-- 433 (530)
T PRK05878 356 ACPGVVSGTAYTDVDEALDAADRGEPVILVRDHTRPDDVHGMLAAQGIVTEVGGATSHAAVVSRELGRVAVVGCGAGV-- 433 (530)
T ss_pred ccCceEEEEEEECHHHHHHHhhccCCEEEEECCCCHHHHhhhHhheEEEEccCCccchHHHHHHHcCCCEEEcccchh--
Confidence 999999999999888777777788999999999999999999999999999999999999999999999999998766
Q ss_pred cCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCc--cchHHHHHHHhhhhhceEEEecCCCh
Q 039683 588 DNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAM--SGDLEIFMSWADEIRRLKVMANADTP 653 (983)
Q Consensus 588 ~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~--~~~~~~~~~~~~~~~~i~v~aNi~~p 653 (983)
..+++|++|||||++|.||.|..+...+.. +..++.++.|.+..+.++|++|.++|
T Consensus 434 ----------~~~~~G~~VtvDg~~G~V~~G~~~~~~~~~~~~~~~~~l~~~ad~i~~L~l~~n~d~~ 491 (530)
T PRK05878 434 ----------AAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRISPLRAHASGDYP 491 (530)
T ss_pred ----------hccCCCCEEEEECCCCEEEeCcccCcCccccCCHHHHHHHHHHHHcCCCeeEeCCCCC
Confidence 567899999999999999999987765543 24688899999999999999999988
No 8
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=100.00 E-value=9.1e-92 Score=856.48 Aligned_cols=454 Identities=24% Similarity=0.353 Sum_probs=390.6
Q ss_pred HHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcc
Q 039683 417 ENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSA 496 (983)
Q Consensus 417 ~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 496 (983)
+.+.+|+.|..+++|.+|..+..+. ++... +++|||+.+++.+.+.|.+++|+|++.|..|+.|+.+
T Consensus 237 ~~a~If~ah~~mL~D~~l~~~v~~~----I~~~~-~Ae~Av~~~~~~~~~~f~~~dd~ylreRa~Di~Dv~~-------- 303 (748)
T PRK11061 237 ETAAIFDLYSHLLNDPRLRRELFAE----VDKGS-VAEWAVKQVIEKFAEQFAALSDNYLRERAGDLRALGQ-------- 303 (748)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH----HHCCC-CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--------
Confidence 4578999999999999998774332 24555 8999999999999999999999999999999999874
Q ss_pred cchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhh--hhceEEEccCCccchHHHhhcccC
Q 039683 497 YKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMH--AAAGILTARGGMTSHAAVVARGWG 574 (983)
Q Consensus 497 ~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~--~a~GiVt~~Gg~tSHaAIvAR~lg 574 (983)
+++..-.+..+. ....+++.|||+++++|+++..++ ++.||||+.||.|||+||+||++|
T Consensus 304 ---Rvl~~L~g~~~~---------------~~~~~~~~Ilva~~l~ps~~~~l~~~~i~Givt~~Gg~tSH~aIlAr~lg 365 (748)
T PRK11061 304 ---RLLFHLDDSEQG---------------PNAWPERFILVADELTATLLAELPQDRLAGVVVRDGAANSHAAILVRALG 365 (748)
T ss_pred ---HHHHHhCCCCcc---------------cccCCCCEEEEECCCCHHHHHhhhhhheEEEEECCCCCccHHHHHHHHcC
Confidence 444332211110 112467899999999999999997 689999999999999999999999
Q ss_pred ceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHHHHHHH-------------hhhh
Q 039683 575 KCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSW-------------ADEI 641 (983)
Q Consensus 575 IP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~~-------------~~~~ 641 (983)
||+|+|++.. ..+.+|+.|+|||++|.||.+|.+.+...|.......... ..+.
T Consensus 366 IP~vvg~~~~-------------~~~~~G~~vilDg~~G~v~vnP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~dg 432 (748)
T PRK11061 366 IPTVMGADIQ-------------PSLLHQRLLIVDGYRGELLVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSG 432 (748)
T ss_pred CCEEEcCcch-------------hhccCCCEEEEECCCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCC
Confidence 9999999732 2356799999999999999999886655554322111111 0122
Q ss_pred hceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcC
Q 039683 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMD 721 (983)
Q Consensus 642 ~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~ 721 (983)
++++|++|+++|+|+..+.++||+||||||||||||.++ ++| +|+| |++.|++++++|+
T Consensus 433 ~~i~l~~Ni~~~~d~~~~~~~ga~GvGL~RtEfl~~~~~-~~P---------~e~e-----------Q~~~y~~~~~~~~ 491 (748)
T PRK11061 433 ERIKVMLNAGLSAEHEEKLGSRVDGVGLYRTEIPFMLQS-GFP---------SEEE-----------QVAQYQGMLQMFP 491 (748)
T ss_pred CeeeEEEecCCHHHHHHHHhCCCCeEecccchhhhccCC-CCC---------CHHH-----------HHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999987 566 8775 9999999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHH
Q 039683 722 GLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAA 801 (983)
Q Consensus 722 ~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa 801 (983)
|+||||||||+|+| |.++|+.. +|.||||||||||++|.||++|++|+|||+||+
T Consensus 492 ~~pv~iRtlDiGgD------------------------K~~~~~~~-~E~NP~lG~RgiR~~l~~~~~f~~QlrAilra~ 546 (748)
T PRK11061 492 DKPVTLRTLDIGAD------------------------KQLPYMPI-SEENPCLGWRGIRITLDQPEIFLIQVRAMLRAN 546 (748)
T ss_pred CCeEEEECCCCCcC------------------------CCCCCCCC-CCCCcccccchhhccccCHHHHHHHHHHHHHHH
Confidence 99999999999755 44555554 499999999999999999999999999999997
Q ss_pred HHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhhCCEEEEcch
Q 039683 802 VSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKEAEFFSFGTN 880 (983)
Q Consensus 802 ~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtN 880 (983)
.. .++++||||||++++|++++++.+++++.++..+.|.++ .+++|+|||||+|++++|+|++++||||||||
T Consensus 547 ~~------~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtN 620 (748)
T PRK11061 547 AA------TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTN 620 (748)
T ss_pred hh------CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECcc
Confidence 52 268999999999999999999999999998875667776 58999999999999999999999999999999
Q ss_pred hhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcC
Q 039683 881 DLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAG 960 (983)
Q Consensus 881 DLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG 960 (983)
|||||+||+||+|+ .+.+.| +|+| |+|+++|++++++|++ +||||+||||||+||..+++|++||
T Consensus 621 DL~Qy~la~DR~n~-~v~~~~--------~~~~----Pavlr~i~~~~~~a~~--~g~~v~vCGe~a~dp~~~~~L~glG 685 (748)
T PRK11061 621 DLTQYLLAVDRNNT-RVASLY--------DSLH----PAMLRALKMIADEAEQ--HGLPVSLCGEMAGDPMGALLLIGLG 685 (748)
T ss_pred HHHHHHHHhcCCCh-HHHhhc--------CCCC----HHHHHHHHHHHHHHhh--CcCEEEEcCCcccCHHHHHHHHHCC
Confidence 99999999999998 566554 8888 7999999999999987 6999999999999999999999999
Q ss_pred CCEEecCCCchHHHHHHhhhh
Q 039683 961 LDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 961 ~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
+|.|||+|..++.+|..+.+.
T Consensus 686 i~~lS~~~~~i~~~k~~i~~~ 706 (748)
T PRK11061 686 YRHLSMNGRSVARVKYLLRHI 706 (748)
T ss_pred CcEEccChHHHHHHHHHHHhC
Confidence 999999999999999988764
No 9
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=100.00 E-value=1.5e-90 Score=820.57 Aligned_cols=456 Identities=26% Similarity=0.379 Sum_probs=393.1
Q ss_pred HHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcc
Q 039683 417 ENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSA 496 (983)
Q Consensus 417 ~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 496 (983)
+.+.||+.|..+++|.+|..+..+. ++....+++|||+.+++.+.+.|.+++|+|+++|..|+.++.+
T Consensus 68 e~a~If~ah~~lL~D~~l~~~v~~~----I~~~~~~Ae~Av~~~~~~~~~~f~~~dd~YlreRa~DI~Dv~~-------- 135 (575)
T PRK11177 68 EKEAIFEGHIMLLEDEELEQEIIAL----IKDKHMTADAAAHSVIEGQAKALEELDDEYLKERAADVRDIGK-------- 135 (575)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--------
Confidence 4568999999999999998764332 3556679999999999999999999999999999999999874
Q ss_pred cchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhh--hhceEEEccCCccchHHHhhcccC
Q 039683 497 YKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMH--AAAGILTARGGMTSHAAVVARGWG 574 (983)
Q Consensus 497 ~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~--~a~GiVt~~Gg~tSHaAIvAR~lg 574 (983)
+++..-.+... . .+...+++.|||+++++|+|+..++ ++.||||+.||.|||+||+||++|
T Consensus 136 ---Rll~~L~g~~~--------~------~~~~~~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg~tSH~AIlAr~lg 198 (575)
T PRK11177 136 ---RLLKNILGLKI--------I------DLSAIQEEVILVAADLTPSETAQLNLKKVLGFITDIGGRTSHTSIMARSLE 198 (575)
T ss_pred ---HHHHHhcCCCC--------c------chhhCCCCeEEEecCCCHHHHhhhhhhheeEEEEcCCCcccHHHHHHHHcC
Confidence 34432211100 0 1123568899999999999998865 699999999999999999999999
Q ss_pred ceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHHH-------HHHHhh------hh
Q 039683 575 KCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEI-------FMSWAD------EI 641 (983)
Q Consensus 575 IP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~-------~~~~~~------~~ 641 (983)
||+|+|++++. ..+++|+.|+|||++|.||.+|.+.+...|...... ...+.+ ++
T Consensus 199 IPavvg~~~~~------------~~~~~G~~vilDg~~G~v~~~P~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~T~DG 266 (575)
T PRK11177 199 LPAIVGTGNIT------------KQVKNGDYLILDAVNNQIYVNPTNEVIEELKAVQEQYASEKAELAKLKDLPAITLDG 266 (575)
T ss_pred CCEEEcChhHH------------hhccCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 99999999876 678999999999999999999988665545322111 111111 23
Q ss_pred hceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcC
Q 039683 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMD 721 (983)
Q Consensus 642 ~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~ 721 (983)
++|+|++|++.++|+..+.+.||+||||||||||||+++ ++| +||+ |++.|++++++|+
T Consensus 267 ~~i~l~aNi~~~~~~~~a~~~ga~GvGL~RtEfl~l~~~-~~P---------~eee-----------q~~~y~~i~~~~~ 325 (575)
T PRK11177 267 HQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFLFMDRD-ALP---------TEEE-----------QFQAYKAVAEAMG 325 (575)
T ss_pred CEEEEEEcCCCHHHHHHHHhCCCceehHhhchHhhhCCC-CCC---------CHHH-----------HHHHHHHHHHHcC
Confidence 679999999999999999999999999999999999987 566 8875 9999999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHH
Q 039683 722 GLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAA 801 (983)
Q Consensus 722 ~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa 801 (983)
|+||||||||+|+| |.++|+..++|.||+|||||||++|.+|++|++|||||+||+
T Consensus 326 ~~~v~iRtlDiGgD------------------------K~~~~~~~~~E~NP~LG~RgiR~~l~~~~~f~~QlrAilra~ 381 (575)
T PRK11177 326 SQAVIVRTMDIGGD------------------------KELPYMNLPKEENPFLGWRAIRIAMDRKEILHDQLRAILRAS 381 (575)
T ss_pred CCeEEEECcCCCcc------------------------cccccCCCCCCCCcccccchhhhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999754 556666678899999999999999999999999999999996
Q ss_pred HHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--CceEEEEEecHHHHHHHHHHHhhCCEEEEcc
Q 039683 802 VSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL--DYKVGTMIEIPRAALVADEIAKEAEFFSFGT 879 (983)
Q Consensus 802 ~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~--~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGt 879 (983)
. .++++||||||++++|++++++.++++..++. +++.++ .+++|+|||||+|++++|+|++.+|||||||
T Consensus 382 ~-------~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~vDf~sIGt 453 (575)
T PRK11177 382 A-------FGKLRIMFPMIISVEEVRELKAEIEILKQELR-DEGKAFDESIEIGVMVETPAAAVIARHLAKEVDFFSIGT 453 (575)
T ss_pred c-------CCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHH-HhccccCCCcEEEEEEeCHHHHHhHHHHHhhCCEEEECc
Confidence 5 36899999999999999999999999887765 556654 5899999999999999999999999999999
Q ss_pred hhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHc
Q 039683 880 NDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEA 959 (983)
Q Consensus 880 NDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~l 959 (983)
|||+||+||+||+|+ ++... ++|+| |+|+++|++++++|++ +|||||+|||+|+||.++++|++|
T Consensus 454 nDL~qy~la~dr~n~-~v~~~--------~~~~h----Pav~~~i~~v~~~a~~--~g~~v~vCGe~A~dp~~~~lLlgl 518 (575)
T PRK11177 454 NDLTQYTLAVDRGNE-LISHL--------YNPMS----PSVLNLIKQVIDASHA--EGKWTGMCGELAGDERATLLLLGM 518 (575)
T ss_pred HHHHHHHHHhccCCc-hhhcc--------CCCCC----HHHHHHHHHHHHHHHh--cCCeEEEeCCCCCCHHHHHHHHHC
Confidence 999999999999997 44433 47887 7999999999999997 699999999999999999999999
Q ss_pred CCCEEecCCCchHHHHHHhhhh
Q 039683 960 GLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 960 G~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
|+|+|||+|..++.+|..+.+.
T Consensus 519 Gi~~lSm~p~~i~~vk~~i~~~ 540 (575)
T PRK11177 519 GLDEFSMSAISIPRIKKIIRNT 540 (575)
T ss_pred CCCeEEECHHHHHHHHHHHHhC
Confidence 9999999999999999987654
No 10
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=100.00 E-value=1.4e-87 Score=796.81 Aligned_cols=456 Identities=27% Similarity=0.411 Sum_probs=391.2
Q ss_pred HHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcc
Q 039683 417 ENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSA 496 (983)
Q Consensus 417 ~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 496 (983)
+.+.||+.|..+++|.+|..+..+. ++....+++|||+.+++.+.+.|..++|+|+++|..|+.|+.+
T Consensus 67 ~~a~If~ah~~mL~D~~l~~~v~~~----I~~~~~~Ae~Av~~~~~~~~~~f~~~dd~YlreRa~Di~Dv~~-------- 134 (565)
T TIGR01417 67 EKAAIFEAHILILEDPELTEEVIEL----IKKDHKNAEFAAHEVFEGQAKSLEEMDDEYLKERAADIRDIGN-------- 134 (565)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--------
Confidence 4568999999999999998764332 3666689999999999999999999999999999999999874
Q ss_pred cchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhh--hhceEEEccCCccchHHHhhcccC
Q 039683 497 YKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMH--AAAGILTARGGMTSHAAVVARGWG 574 (983)
Q Consensus 497 ~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~--~a~GiVt~~Gg~tSHaAIvAR~lg 574 (983)
+++..-.+... . .....+++.|||+++++|+++..|+ ++.||||+.||.|||+||+||++|
T Consensus 135 ---Rll~~L~g~~~-----------~---~~~~~~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg~tSH~aIlAR~lg 197 (565)
T TIGR01417 135 ---RLLGHLLGVKI-----------S---DLSEIQDEVILVAEDLTPSETAQLNLKYVKGFLTDAGGKTSHTAIMARSLE 197 (565)
T ss_pred ---HHHHHhcCCCc-----------c---chhcCCCCeEEEecCCCHHHHHHhhhhheeEEEEccCCCcchHHHHHHHcC
Confidence 44432211110 0 0123568899999999999999876 499999999999999999999999
Q ss_pred ceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHHHH-------HHH------hhhh
Q 039683 575 KCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEIF-------MSW------ADEI 641 (983)
Q Consensus 575 IP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~-------~~~------~~~~ 641 (983)
||+|+|+++.. ..+++|+.|+|||++|.||.+|.+.+...|....... ..+ ..+.
T Consensus 198 IP~vvg~~~~~------------~~~~~G~~v~vDg~~G~v~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~dg 265 (565)
T TIGR01417 198 IPAIVGTKSVT------------SQVKNGDTVIIDGVKGIVIFNPSSETIDKYEAKQEAVSSEKAELAKLKDKPAITLDG 265 (565)
T ss_pred CCEEEcchhHH------------hhCCCCCEEEEECCCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCCC
Confidence 99999999876 6789999999999999999999876554443221111 111 1134
Q ss_pred hceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcC
Q 039683 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMD 721 (983)
Q Consensus 642 ~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~ 721 (983)
++++|++|+++++|++.+..+||+||||||||||||..+ ++| +|++ |++.|++++++|.
T Consensus 266 ~~i~v~aNi~~~~d~~~~~~~ga~GiGL~RtEfl~l~~~-~~P---------~e~e-----------q~~~y~~i~~~~~ 324 (565)
T TIGR01417 266 HQVELAANIGTVDDVEGAERNGGEGIGLFRTEFLYMSRD-QLP---------TEEE-----------QFAAYKTVLEAME 324 (565)
T ss_pred ceEEEEecCCCHHHHHHHHhCCCCEEEeeechHhhhCCC-CCC---------CHHH-----------HHHHHHHHHHHhC
Confidence 679999999999999999999999999999999999886 555 8775 9999999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHH
Q 039683 722 GLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAA 801 (983)
Q Consensus 722 ~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa 801 (983)
|+||||||||+|+| |.++++..++|.||+|||||||++|.+|++|++|+|||+||+
T Consensus 325 ~~pv~iRtlDig~D------------------------K~~~~~~~~~E~NP~LG~RgiR~~l~~~~lf~~QlrAI~ra~ 380 (565)
T TIGR01417 325 SDAVIVRTLDIGGD------------------------KELPYLNFPKEENPFLGYRAIRLALEREEILRTQLRAILRAS 380 (565)
T ss_pred CCceEEECCCCCCc------------------------ccccccCCCCCCCccccchhhhhcccCHHHHHHHHHHHHHHH
Confidence 99999999999754 555566667899999999999999999999999999999997
Q ss_pred HHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--CceEEEEEecHHHHHHHHHHHhhCCEEEEcc
Q 039683 802 VSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL--DYKVGTMIEIPRAALVADEIAKEAEFFSFGT 879 (983)
Q Consensus 802 ~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~--~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGt 879 (983)
. .++++||||||++++|++++++.++++..++. +++.+. .+++|+|||||+|++++++|++++|||||||
T Consensus 381 ~-------~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~-~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGt 452 (565)
T TIGR01417 381 A-------YGKLRIMFPMVATVEEIRAVKQELEEEKQELN-DEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGT 452 (565)
T ss_pred h-------cCCCeEEecCCCCHHHHHHHHHHHHHHHHHHH-HhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEEECh
Confidence 5 35799999999999999999999999876654 455554 5899999999999999999999999999999
Q ss_pred hhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHc
Q 039683 880 NDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEA 959 (983)
Q Consensus 880 NDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~l 959 (983)
|||+||+||+||+|. ++... ++|+| |+|.++|++++++|++ +||+|++|||++++|..+++|+++
T Consensus 453 nDLsqy~la~dR~n~-~l~~~--------~~~~h----PaV~~~i~~vi~~a~~--~g~~v~vCGe~a~~p~~~~~l~~~ 517 (565)
T TIGR01417 453 NDLTQYTLAVDRGND-LISNL--------YQPYN----PAVLRLIKLVIDAAKA--EGIWVGMCGEMAGDERAIPLLLGL 517 (565)
T ss_pred hHHHHHHHhhcccch-hhhcc--------cCCCC----HHHHHHHHHHHHHHHH--cCCeEEEeCCcCCCHHHHHHHHHC
Confidence 999999999999997 33333 47777 7999999999999997 599999999999999999999999
Q ss_pred CCCEEecCCCchHHHHHHhhhh
Q 039683 960 GLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 960 G~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
|+++|||+|..++.+|.++.+.
T Consensus 518 G~~~lsv~~~~i~~~k~~i~~~ 539 (565)
T TIGR01417 518 GLRELSMSASSILRIKMIIRKL 539 (565)
T ss_pred CCCEEEEChHhHHHHHHHHHhc
Confidence 9999999999999999988775
No 11
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-81 Score=700.88 Aligned_cols=451 Identities=28% Similarity=0.380 Sum_probs=385.9
Q ss_pred HHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcc
Q 039683 417 ENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSA 496 (983)
Q Consensus 417 ~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 496 (983)
+...+||.|..++.|--|.-+-.. |+|. ..+|+||++.+.+.+...|..+.|+|+++|..|++++.+
T Consensus 244 E~~av~d~Y~m~~~D~~~~r~l~~----aIr~-G~~Ae~Ave~V~s~~~ar~~~ltD~YLRER~~D~~dL~~-------- 310 (756)
T COG3605 244 EHRAVFDLYRMFLHDRGWRRELEE----AIRK-GLTAEAAVEQVQSEFAARFARLTDPYLRERASDLRDLGQ-------- 310 (756)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHH----HHhc-CchHHHHHHHHHHHHHHHHHhccCHHHHHHHhhHHHHHH--------
Confidence 567788999999999999765222 2354 368999999999999999999999999999999999874
Q ss_pred cchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhh--hhceEEEccCCccchHHHhhcccC
Q 039683 497 YKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMH--AAAGILTARGGMTSHAAVVARGWG 574 (983)
Q Consensus 497 ~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~--~a~GiVt~~Gg~tSHaAIvAR~lg 574 (983)
+++..-...-.+ -.+.|++.|||+++++|.++..++ +..|+|.+.|+.|||++|+||.||
T Consensus 311 ---RLL~~L~~~~~~---------------~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGaanSH~aIvaRAmG 372 (756)
T COG3605 311 ---RLLRHLDGAEQG---------------ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGAANSHAAIVARAMG 372 (756)
T ss_pred ---HHHHHhcCcccc---------------hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCcccchHHHHHHhcC
Confidence 344333321110 124678999999999999999986 589999999999999999999999
Q ss_pred ceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCCCCCCCccchHHH-------HHHH------hhhh
Q 039683 575 KCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQPLAPPAMSGDLEI-------FMSW------ADEI 641 (983)
Q Consensus 575 IP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~-------~~~~------~~~~ 641 (983)
||||.|..++. ....+|+.++|||++|+||..|.+....+|.+.... +... .+++
T Consensus 373 IP~V~~a~~i~------------~~~~n~~~~IVDG~~gev~l~P~~dl~~aY~~~v~~~~e~s~~~~~lr~~p~~tkdG 440 (756)
T COG3605 373 IPTVMGAAGIV------------PSVLNGDALIVDGYRGEVHLRPEPDLVRAYQELVREEAELSRLARDLRNLPAITKDG 440 (756)
T ss_pred CceeccccCcc------------hhhhcCCcEEEECCcceEEeCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 99999987776 456899999999999999999988766666432111 1111 1123
Q ss_pred hceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcC
Q 039683 642 RRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMD 721 (983)
Q Consensus 642 ~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~ 721 (983)
.++.++.|.+-.-|...+.+.|||||||||||+-||-.+ ++| ++|| |.+.|+.++++++
T Consensus 441 ~ri~l~mNAGL~~D~~~l~e~gadGIGLyRTEi~FM~as-~fP---------~~Ee-----------Q~a~Yr~vL~~~~ 499 (756)
T COG3605 441 ERIKLLMNAGLSVDLPQLLESGADGIGLYRTEIQFMLAS-GFP---------SEEE-----------QEAQYRGVLQAAN 499 (756)
T ss_pred ceeeeeecCCcccccHHHhhCCCcceeeeehhhHHHHhc-cCC---------chHH-----------HHHHHHHHHHhcC
Confidence 679999999999999999999999999999999999776 677 6765 8899999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHH
Q 039683 722 GLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAA 801 (983)
Q Consensus 722 ~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa 801 (983)
|+|||+||||+| +||+++|++ -+|+||+|||||||+.|.+|+||.+|+||++||+
T Consensus 500 ~kpVT~RTLDIG------------------------gDK~LpY~~-i~EeNP~LGWR~IR~tLDrP~i~~~Q~RAmLrAs 554 (756)
T COG3605 500 GKPVTFRTLDIG------------------------GDKVLPYMP-ISEENPALGWRGIRLTLDRPEIFRIQVRAMLRAS 554 (756)
T ss_pred CCCeeEEeeccC------------------------CCcccCCCc-ccccCccccceeeEeecCChhHHHHHHHHHHHhh
Confidence 999999999996 467888887 7899999999999999999999999999999996
Q ss_pred HHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCceEEEEEecHHHHHHHHHHHhhCCEEEEcch
Q 039683 802 VSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGS-SLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTN 880 (983)
Q Consensus 802 ~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~-~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtN 880 (983)
.. .+|++||+|||+.++|+++++++++....++.+..+. +..+++|+|+|+|+.+++.+++++.+||+|+|||
T Consensus 555 ~g------~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtN 628 (756)
T COG3605 555 AG------TGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTN 628 (756)
T ss_pred CC------CcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecch
Confidence 42 4689999999999999999999998776666533323 2368999999999999999999999999999999
Q ss_pred hhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcC
Q 039683 881 DLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAG 960 (983)
Q Consensus 881 DLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG 960 (983)
|||||+||+||+|+ .+++.| |+.| |++++++++++++|.+ +|+||++||||+++|..+-.|+++|
T Consensus 629 DL~QyllAvDR~N~-RVad~y--------D~L~----pa~LraLk~I~~a~~~--~~~pVtlCGEMAg~Pl~A~~LigLG 693 (756)
T COG3605 629 DLTQYLLAVDRNNT-RVADRY--------DSLH----PAFLRALKQIVRAAER--HGTPVTLCGEMAGDPLSAMALIGLG 693 (756)
T ss_pred HHHHHHHHHhcCCc-hhhhhh--------cccC----HHHHHHHHHHHHHHHh--cCCCeeehhhhcCChHHHHHHHhcC
Confidence 99999999999998 677776 5666 6999999999999986 6999999999999999999999999
Q ss_pred CCEEecCCCchHHHHHH
Q 039683 961 LDYVSCSPFRVPIARLA 977 (983)
Q Consensus 961 ~~~~Sv~p~~i~~~r~a 977 (983)
||++||+|..|+-+|.-
T Consensus 694 frslSMn~~~v~~VK~m 710 (756)
T COG3605 694 FRSLSMNPRSVGPVKYL 710 (756)
T ss_pred cCccccCccccccHHHH
Confidence 99999999999888753
No 12
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=100.00 E-value=1.4e-70 Score=600.94 Aligned_cols=278 Identities=38% Similarity=0.575 Sum_probs=238.4
Q ss_pred HHhhhhhceEEEecCCChHhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHH
Q 039683 636 SWADEIRRLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEG 715 (983)
Q Consensus 636 ~~~~~~~~i~v~aNi~~p~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~ 715 (983)
.+..+.++++|++|+++++|++.+.++||||||||||||||++.+ ++| ++++ |++.|++
T Consensus 12 ~~t~dg~~i~l~aNi~~~~d~~~~~~~gadGIGL~RtEfl~l~~~-~~p---------~e~e-----------q~~~y~~ 70 (293)
T PF02896_consen 12 ARTKDGTRIKLMANIGSPEDAEKALELGADGIGLFRTEFLFLNRG-RPP---------SEEE-----------QYEIYRK 70 (293)
T ss_dssp HBHTTS-BSEEEEEESSGHHHHHHHHTT-SSEEEEECHHHHSSSS-SHH---------HHHH-----------HHHHHHH
T ss_pred hhhCCCCEEEEEEeCCCHHHHHHHHhcCCccccchhhhhhhhcCC-CCc---------hHHH-----------HHHHHHH
Confidence 345566889999999999999999999999999999999999987 676 5654 9999999
Q ss_pred HHHHcCCCcEEEEecCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhh-hccccCCCCCCCccccccCCChHHHHHHH
Q 039683 716 IFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRI-EKLSEVNPMLGFRGCRLGISYPELTEMQV 794 (983)
Q Consensus 716 i~~a~~~~pVtiR~lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~-~~~~E~NP~LG~RGiR~~l~~p~i~~~Ql 794 (983)
++++|+|+||||||||+|+||++|. + ..++|.||+|||||||++|.+|++|++|+
T Consensus 71 i~~~~~~~pV~iRtlD~g~dK~l~~------------------------~~~~~~E~NP~LG~RGiR~~l~~p~~f~~Ql 126 (293)
T PF02896_consen 71 IAEAMGGKPVTIRTLDIGGDKPLPY------------------------LSREPKEENPALGLRGIRRSLAHPELFRTQL 126 (293)
T ss_dssp HHHHTTTSEEEEE---SBCCCGSCS------------------------SHHCH--SSGGGSSBTHHHHHHSHHHHHHHH
T ss_pred HHHHhccCcEEEEecCCCCCccCCc------------------------ccccccccccccccccccccccchhhHHHHH
Confidence 9999999999999999988776665 3 45789999999999999999999999999
Q ss_pred HHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--CceEEEEEecHHHHHHHHHHHhhC
Q 039683 795 RAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL--DYKVGTMIEIPRAALVADEIAKEA 872 (983)
Q Consensus 795 rAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~--~~~vg~MIEtP~a~~~a~~ia~~~ 872 (983)
|||+||+.. +|++||+|||++++|++++++.++++++++.. .|.+. .+++|+|||||++++.+++|++++
T Consensus 127 rAilra~~~-------g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~-~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 127 RAILRAAAE-------GNLRIMFPMVSTVEEVREAKEILEEVKEELRE-EGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHH-------SEEEEEESS--SHHHHHHHHHHHHHHHHHHHH-HTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred HHHHHHHhh-------cCCEEEecCCCcHHHHHHHHHHHHHHHHHHHH-hccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 999999873 58999999999999999999999999888763 44443 689999999999999999999999
Q ss_pred CEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHH
Q 039683 873 EFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSS 952 (983)
Q Consensus 873 Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~ 952 (983)
|||||||||||||+||+||+|. .+... +||+| |+|+++|++++++|++ .||||+||||++++|..
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~-~v~~~--------~d~~~----Pavl~li~~vi~~a~~--~g~~vsvCGe~a~~p~~ 263 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNA-RVAYL--------YDPLH----PAVLRLIKQVIDAAHK--AGKPVSVCGEMASDPEA 263 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCC-TCGGG--------S-TTS----HHHHHHHHHHHHHHHH--TT-EEEEESGGGGSHHH
T ss_pred CEEEEChhHHHHHHhhcCCCCc-chhhh--------cCcch----HHHHHHHHHHHHHHhh--cCcEEEEecCCCCCHHH
Confidence 9999999999999999999998 44444 48888 7999999999999998 59999999999999999
Q ss_pred HHHHHHcCCCEEecCCCchHHHHHHhhhh
Q 039683 953 VAFFAEAGLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 953 ~~~l~~lG~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
+++|+++|+++|||+|+.|+.+|.+++|.
T Consensus 264 ~~~Ll~lGi~~lSv~p~~i~~vk~~i~~~ 292 (293)
T PF02896_consen 264 IPLLLGLGIRSLSVSPDSIPRVKKAIRRV 292 (293)
T ss_dssp HHHHHHHT-SEEEE-GGGHHHHHHHHHCC
T ss_pred HHHHHHcCCCEEEECHHHHHHHHHHHHhc
Confidence 99999999999999999999999999875
No 13
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=3.8e-53 Score=526.39 Aligned_cols=272 Identities=25% Similarity=0.424 Sum_probs=224.5
Q ss_pred cceEEEccCCCccCCccCccccCHHHHhHHHHHhCCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHHhc
Q 039683 110 EKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKEMG 189 (983)
Q Consensus 110 ~~~v~~~~~~~~~~~~~~~~lvGgKaanL~~L~~~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~~~ 189 (983)
+++|++| .+....+.+.+||||+||++|.+.|+|||+|||||+++|+.|++.+ ++.+.+.+.+..+..
T Consensus 2 ~~~v~~l----~~~~~~~~~~vGgKa~~L~~L~~~G~~VP~gfvi~~~~~~~~l~~~-----~~~~~i~~~l~~~~~--- 69 (871)
T PRK06241 2 SSYVLDF----QEIDKTQLPLVGGKGANLGELSRAGIPVPEGFCVTTEAYKKFLEQN-----EEFDALLDQLSALKL--- 69 (871)
T ss_pred CceEEEh----hhcCcccccccChHHHHHHHHHHCCCCCCCeEEecHHHHHHHHHhC-----CcHHHHHHHHhcCCC---
Confidence 3599999 6888888999999999999999999999999999999999999873 556666665554321
Q ss_pred cccCCCCCccchhhcccccccchhHHHHHhcCCCcHHHHHHHHHhcCCchhHHHHHHHHhhccCcccccCcchHHHHHHH
Q 039683 190 ALLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEH 269 (983)
Q Consensus 190 ~~~g~~~~plllsvrs~a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l~~ 269 (983)
..+..+...+. .+++.|++.++|+++.++|. ++|.. +|
T Consensus 70 ------~~~~~~~~~~~------~ir~~i~~~~~p~~l~~~l~---------~a~~~----~~----------------- 107 (871)
T PRK06241 70 ------EDREQIGEISA------KIREVIEAIEIPEDIVEAIA---------AALSK----FG----------------- 107 (871)
T ss_pred ------CCHHHHHHHHH------HHHHHHHcCCCCHHHHHHHH---------HHHHH----hC-----------------
Confidence 11222222222 48999999999999999985 12221 12
Q ss_pred HHhhcCccccCCCChhhHH--HHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCC-CCCce
Q 039683 270 MKEAKGVKLDTDLSASDLK--ELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITG-LKGTA 346 (983)
Q Consensus 270 ~~~~~~vavrSs~~~ED~~--~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~-~~~ma 346 (983)
....++||||++.||+. +|||||.| ++||.|. +++.+|||+||+|+||+||+.||+++|+++ +.+||
T Consensus 108 --~~~~~aVRSSa~~ED~~~~SfAGq~~t-~l~v~~~-------~~~~~ai~~~waS~~~~ra~~Yr~~~g~~~~~~~ma 177 (871)
T PRK06241 108 --EDHAYAVRSSATAEDLPTASFAGQQDT-YLNVIGK-------DAILQHIRKCWASLFTERAVIYRIQNGFDHRKVYMS 177 (871)
T ss_pred --CCCeEEEeCCCCccCCCCCCCcccccc-ccCCCCH-------HHHHHHHHHHHHhccCHHHHHHHHHcCCCchhcceE
Confidence 12468999999999984 68999996 4688876 899999999999999999999999999998 68999
Q ss_pred EEEEEcccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhh-----------h----------
Q 039683 347 VNIQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTM-----------K---------- 405 (983)
Q Consensus 347 V~VQ~MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~-----------~---------- 405 (983)
|+||+||+++ .|||+||+||.||+++.+....+.|+||+||+|.++||+|.+. |
T Consensus 178 V~vQ~mv~~~-----~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v~pd~~~v~~~~i~~~~i~~k~~~~~~~~~g 252 (871)
T PRK06241 178 VVVQKMVFPE-----ASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLVSADTYKVREGKIIDKTIATKKLAIYALKEG 252 (871)
T ss_pred EEEEeccccc-----cceEEEecCCCCCCCCEEEEEEecCCChhhhcCccCCeEEEEeCCceEEEeccccceEEEecCCC
Confidence 9999999764 7999999999999876544445668999999999999998642 0
Q ss_pred --------------hcc-hHHHHHHHHHHHHHHHHhccccCcccccccCcEEEEEeeccc
Q 039683 406 --------------SYM-PEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGK 450 (983)
Q Consensus 406 --------------~~~-p~~~~~La~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~ 450 (983)
.++ ++++.+|++++..+|.||+.||||||+++++++||||+||++
T Consensus 253 g~~~~~~~~~~~~~~~L~~~~~~~L~~l~~~ie~~~g~pqDIEw~~~~~~l~ilQaRPit 312 (871)
T PRK06241 253 GTETKEIEPEQQKSQTLTDEQILELARLGRKIEAHFGCPQDIEWCLADGTFYILQSRPIT 312 (871)
T ss_pred ceEEEECCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEEEECCEEEEEEcCCcc
Confidence 122 357899999999999999999999999999999999999975
No 14
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=2.3e-45 Score=413.09 Aligned_cols=278 Identities=35% Similarity=0.487 Sum_probs=198.6
Q ss_pred CccccCHHHHhHHHHHhCCCCCCCcEEeCHHHHHHHHHhCcCCchhHHHHHHHHHHHHHHHhccccCCCCCccchhhccc
Q 039683 127 MKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKLSEGLWEEVLEGLETVEKEMGALLGDPSKPLLLSVRSG 206 (983)
Q Consensus 127 ~~~lvGgKaanL~~L~~~GlpVP~GFvITt~a~~~fl~~~~~lp~~l~~~i~~~l~~le~~~~~~~g~~~~plllsvrs~ 206 (983)
|.+++||||+||++|.+.|+|||+|||||+++|++|++. +++++.+...++.+. .+.+..
T Consensus 2 d~~~vGgKa~~L~~L~~~g~~VP~gfvIt~~~~~~~l~~-----~~l~~~i~~~~~~~~---------------~~~~~~ 61 (327)
T PF01326_consen 2 DASLVGGKAANLAELRRAGVPVPPGFVITTDAFQEFLES-----NGLREEIEQLLEPLD---------------LSDRED 61 (327)
T ss_dssp GHHHHHHHHHHHHHHHHTT-S---EEEE-HHHHHHHHTT-----CCHHHHHHHHHHBE----------------EEEEEE
T ss_pred ChHHCCHHHHHHHHHHHCCCCCCcEEEecHHHHHHHHHc-----CChHHHHHHHHhhhc---------------cccHHH
Confidence 445689999999999999999999999999999999987 468888876665221 222222
Q ss_pred ccccchhHHHHHhcCCCcHHHHHHHHHhcCCchhHHHHHHHHhhccCcccccCcchHHHHHHHHHhhcCccccCCCChhh
Q 039683 207 AAISMPGMMDTVLNLGLNDEVAAGLAEKCGGRFAYDSYRRFLDMFGDVVMGIPHSLFEEKLEHMKEAKGVKLDTDLSASD 286 (983)
Q Consensus 207 a~~s~pg~~~~Il~~~lp~e~~~~l~~~~g~~~a~d~~~rl~~~~g~~~~~v~~~~f~~~l~~~~~~~~vavrSs~~~ED 286 (983)
.......|+++|++.++|+++.++|.+ .+..|.. ....++||||++.||
T Consensus 62 ~~~~~~~i~~~i~~~~lp~~~~~~l~~---------~~~~~~~----------------------~~~~~aVRSSa~~ED 110 (327)
T PF01326_consen 62 LQAISKEIRELILSAPLPEELVEELEA---------ALEELGQ----------------------RDQPLAVRSSATSED 110 (327)
T ss_dssp CSSHHTTCCHEEEEET--HHHHHHHHH---------HHTHHHH----------------------HHHHCCCEECE-HHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH---------Hhccccc----------------------ccceEEEeccccccc
Confidence 223345699999999999999999852 2222111 024689999999999
Q ss_pred H--HHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCC-CCCceEEEEEcccCCCCCccce
Q 039683 287 L--KELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITG-LKGTAVNIQCMVFGNMGNTSGT 363 (983)
Q Consensus 287 ~--~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~-~~~maV~VQ~MV~g~~~~~~~s 363 (983)
+ .+|||+|.|+ +++.+. ++|..||++||+|+|++||+.||+++|+++ +.+|||+||+||.+ ..|
T Consensus 111 ~~~~sfAG~~~s~-l~v~~~-------~~l~~Aik~v~aS~f~~ra~~yr~~~g~~~~~~~maVlVQ~mv~~-----~~s 177 (327)
T PF01326_consen 111 GAEASFAGQYDSV-LNVPGE-------EELLEAIKQVWASLFSPRALAYRRRRGIPDEDVGMAVLVQPMVDA-----EAS 177 (327)
T ss_dssp HH-HHHHHHHHHH-HHHHSH-------HHHHHHHHHHHHHTTSHHHHHHHHHTT-TTS---EEEEEEE---T-----TEE
T ss_pred cchHHHHHHHHHH-hCCChH-------HHHHHHHHHHHhCcCCHHHHHHHHhcCCChhHhCceeEEEEEecC-----cce
Confidence 8 5799999977 577764 899999999999999999999999999998 68999999999966 589
Q ss_pred EEEEecCCCCCCcceeeEE-EEeccccceecccccccchhhhhh------------------------------------
Q 039683 364 GVLFTRNPSTGENKLYGEF-LINAQGEDVVAGIRTPEDLNTMKS------------------------------------ 406 (983)
Q Consensus 364 GV~fT~nP~tg~~~~~ge~-~i~~~Ge~vVsG~~~pd~~~~~~~------------------------------------ 406 (983)
||+||+||.||++...+.+ .+.|+||++|+|.++||.|.+.+.
T Consensus 178 GV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~~~d~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 257 (327)
T PF01326_consen 178 GVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEVTPDSFIVSRSDPRIREREIGQKSVQLVPDEGGGLEEVDVPEERQDS 257 (327)
T ss_dssp EEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS--EECCC--EHHHHHEEE----HCCCCCCCTTTEECCCHHHHCHCH
T ss_pred eEEEeeCCCCCCCCcceEEEEccCCCcccccCCCCCcEEEEEcCCcchhhhhcCCceEEEEEcCCCceEEEeCchhhhhh
Confidence 9999999999998752333 677999999999999999964210
Q ss_pred -c-chHHHHHHHHHHHHHHHHhccccCcccccccCcEEEEEeeccccc---HHHHHHHHHHHHHhhh
Q 039683 407 -Y-MPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRT---GKAAVKIAVDMVNEGL 468 (983)
Q Consensus 407 -~-~p~~~~~La~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~---a~~Av~~a~~~~~~~~ 468 (983)
. .++.+++|++++..+|.||+.||||||+++.+++||||+||++.. ...+.+++.+.-.+++
T Consensus 258 ~~l~~~~~~~L~~l~~~le~~~g~p~DIEw~~~~~~l~iLQaRPi~~~~~~~~~~~~~~~~~~~~~~ 324 (327)
T PF01326_consen 258 PSLSDEQLQQLAELARKLEEHFGRPQDIEWAIDGGQLYILQARPITTLPRKSESAVKIAADRRKEGL 324 (327)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTS-EEEEEEEETTEEEEEEEEE-------HHHHHHHHHHHHHTTS
T ss_pred hhcCHHHHHHHHHHHHHHHHHcCCCeEEEEEEECCEEEEEEeccccccCccchhhHHHhhhcccccc
Confidence 1 135789999999999999999999999999999999999998533 3344455544444443
No 15
>PRK05849 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=411.64 Aligned_cols=178 Identities=19% Similarity=0.264 Sum_probs=154.4
Q ss_pred cCccccCCCChhhH--HHHHHHHHhhhhcccCCCCCCChHHHHHHHHHHHHhcCCChhHHHHHHHcCCCCCCCceEEEEE
Q 039683 274 KGVKLDTDLSASDL--KELVKQYKNVYIETKGEEFPSDPKKQLQLSVKAVFDSWDSPRAIKYRSINQITGLKGTAVNIQC 351 (983)
Q Consensus 274 ~~vavrSs~~~ED~--~~~ag~y~s~~l~v~G~~~p~d~~~~l~~Aik~v~aS~~s~rA~~YR~~~g~~~~~~maV~VQ~ 351 (983)
..++||||++.||+ .+|||||.|++ |+ |.++.++|..||++||+||++ + ..|+|+||+
T Consensus 56 ~~laVRSSa~~ED~~~~S~AGq~~S~l-nV-----~~~~~~~L~~AI~~V~aS~~~-----------~---~~~aVlVQ~ 115 (783)
T PRK05849 56 DKLIVRSSSRSEDSSSSSNAGAFLSIL-NV-----NADSKDQLLKAIEKVIASYGT-----------S---KDDEILVQP 115 (783)
T ss_pred CeEEEECCCcccCCCcCccccCceeEe-cC-----CCCcHHHHHHHHHHHHHhhCC-----------C---CCCeEEEEe
Confidence 46899999999997 57899999775 44 566888999999999999887 2 348999999
Q ss_pred cccCCCCCccceEEEEecCCCCCCcceeeEEEEeccccceecccccccchhhh----hhcchHHHHHHHHHHHHHHHHhc
Q 039683 352 MVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLNTM----KSYMPEAYKELVENCEILERHYK 427 (983)
Q Consensus 352 MV~g~~~~~~~sGV~fT~nP~tg~~~~~ge~~i~~~Ge~vVsG~~~pd~~~~~----~~~~p~~~~~La~~a~ilE~~~~ 427 (983)
||++ .++|||+||+||.||+++.+++|.++|+|++||+|.++|+.+... ....|+.+++|++++..||.||+
T Consensus 116 MV~~----~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg 191 (783)
T PRK05849 116 MLED----IVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFG 191 (783)
T ss_pred CccC----CCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcC
Confidence 9973 468999999999999999899999999999999999998877643 23457899999999999999997
Q ss_pred c-ccCccccc-ccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhh
Q 039683 428 D-MMDIEFTV-QENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVK 476 (983)
Q Consensus 428 ~-~qDiEf~~-~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~ 476 (983)
. ||||||++ +++++||||+||++.++. +++++++++.++++..++.+.
T Consensus 192 ~dpqDIEfaid~~g~L~lLQ~RPi~~~~~-~~r~~~~~v~e~l~~~~~ai~ 241 (783)
T PRK05849 192 CDFLDIEFAIDEKEELYILQVRPITVPEK-WNAEFLSLVAQALERIYKKFE 241 (783)
T ss_pred CCCeeeEEEEccCCEEEEEEccCCCccch-hHHHHHHhHHHHHhhHHHHHH
Confidence 5 99999999 689999999999999888 899999999999977654444
No 16
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=99.84 E-value=2.3e-21 Score=225.81 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=134.0
Q ss_pred HHHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccChHhhhhhcCCCCCCCcc
Q 039683 417 ENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVEPQHLDQLLHPQFEDPSA 496 (983)
Q Consensus 417 ~~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 496 (983)
+.+.||+.|..+++|.+|..+..+. ++....+++|||+.+++.+.+.|..++++|++.|..|++|+.+
T Consensus 311 ~~a~If~ah~~lL~D~~l~~~v~~~----I~~~~~~Ae~A~~~~~~~~~~~f~~ldd~YLreRa~DI~DV~~-------- 378 (473)
T PRK11377 311 DIAAIFSGHHTLLDDPELLAAASER----LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLH-------- 378 (473)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--------
Confidence 3567999999999999998764332 3556679999999999999999999999999999999999974
Q ss_pred cchhhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhh--hhceEEEccCCccchHHHhhcccC
Q 039683 497 YKDKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMH--AAAGILTARGGMTSHAAVVARGWG 574 (983)
Q Consensus 497 ~~~~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~--~a~GiVt~~Gg~tSHaAIvAR~lg 574 (983)
+++..-.+..+. ....++++|||+++++|+++..|+ ++.||||+.||.|||+||+||+||
T Consensus 379 ---RvL~~L~g~~~~---------------~~~~~~~~ILVA~dLtPSd~a~Ld~~~V~Givt~~GG~TSHtAILARslg 440 (473)
T PRK11377 379 ---RTLVHLTQTKEE---------------LPQFNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPLSHSAIIARELG 440 (473)
T ss_pred ---HHHHHhcCCCCC---------------ccCCCCCEEEEECCCCHHHHHhcCHhHeEEEEECCCCcccHHHHHHHHcC
Confidence 444332211110 012457899999999999999997 489999999999999999999999
Q ss_pred ceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEc
Q 039683 575 KCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILG 618 (983)
Q Consensus 575 IP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g 618 (983)
||+|+|+++.. ..+++|+.|+|||++|.||.+
T Consensus 441 IPaVvg~~~~~------------~~~~~G~~vilDG~~G~v~v~ 472 (473)
T PRK11377 441 IGWICQQGEKL------------YAIQPEETLTLDVKTQRLNRQ 472 (473)
T ss_pred CCEEEcchhhH------------hhccCCCEEEEECCCCEEEeC
Confidence 99999998876 678999999999999999975
No 17
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=99.77 E-value=4.4e-19 Score=160.86 Aligned_cols=108 Identities=29% Similarity=0.418 Sum_probs=95.4
Q ss_pred hhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEecc
Q 039683 502 VATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGC 581 (983)
Q Consensus 502 l~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv 581 (983)
+++|.+...|.++|+++......+...++.++.|||++.++.+.++.|.++.|||||+||.|||+||+++++|||+|+|+
T Consensus 2 l~~GqgIg~gsv~G~~~vA~~~~~~~~k~~~g~iLv~~std~d~v~~~eKa~aiItee~glTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 2 LAKGQGIGRGSVSGRAVVADSGKEAEQKFEEGVILVTPSTDADFVPALEKAAAIITEEGGLTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred cccceeecccceeeEEEEccCHhHhhCCcccCcEEEeccCChhhHHHHHhhheeEeccCCccccceeeEeecCCcEEEEe
Confidence 46788888999999977554333333347789999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCC
Q 039683 582 SDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQP 621 (983)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~ 621 (983)
.+++ ..+++|+.||||+.+|.||.|...
T Consensus 82 ~~at------------~~i~dG~~vTvD~~rG~VY~g~~~ 109 (111)
T COG3848 82 KKAT------------QLIRDGAIVTVDAQRGVVYEGAAS 109 (111)
T ss_pred cchh------------hhccCCCEEEEecccceEEecccC
Confidence 9988 789999999999999999999753
No 18
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=99.69 E-value=2.1e-17 Score=148.61 Aligned_cols=73 Identities=40% Similarity=0.716 Sum_probs=65.0
Q ss_pred hcCCCeEEEecCCCcchHh-hhhhhceEEEccCCccchHHHhhcccCceEEeccCccccccCCceEEeccEEeeCCCEEE
Q 039683 529 AQGKSAILVRTETSPEDIG-GMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLS 607 (983)
Q Consensus 529 ~~~~~~ILV~~~~~P~~~~-~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~Vt 607 (983)
+.+++.|||+++++|+|+. .+.+++||||+.||.|||+||+||++|||+|+|+++.. ..+++|++|+
T Consensus 7 ~~~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~~~~------------~~i~~g~~v~ 74 (80)
T PF00391_consen 7 KLPEGVILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVGDAT------------EAIKDGDWVT 74 (80)
T ss_dssp CTTSTEEEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTTTHH------------HHSCTTEEEE
T ss_pred cCCCCEEEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEeeccHh------------hccCCCCEEE
Confidence 4567799999999999999 77889999999999999999999999999999999776 6789999999
Q ss_pred EECCcc
Q 039683 608 LNGSTG 613 (983)
Q Consensus 608 lDg~~G 613 (983)
|||++|
T Consensus 75 lDg~~G 80 (80)
T PF00391_consen 75 LDGNSG 80 (80)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 999987
No 19
>PRK08296 hypothetical protein; Provisional
Probab=99.67 E-value=8.2e-17 Score=191.61 Aligned_cols=100 Identities=32% Similarity=0.434 Sum_probs=90.5
Q ss_pred hcCCCCCCCcEEEEEE--cChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEec
Q 039683 503 ATGLPASPGAAVGQVV--FSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSG 580 (983)
Q Consensus 503 ~~G~~~s~G~a~G~v~--~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvG 580 (983)
.+|+++|+|.++|+|+ .+.++ +...++|.|||+++++|+|++.+.+++||||+.||.+||+||+||++|||||||
T Consensus 500 l~G~~~s~G~v~G~vrvv~~~~~---~~~~~~g~ILV~~~tdP~~~~~~~~~~GiVte~Gg~~SHaAIvARe~GIPaVvg 576 (603)
T PRK08296 500 LKGFAASPGVVEGPARVIRSADE---LSEVQEGEILVCPVTSPSWAPIFAKIKATVTDIGGVMSHAAIVCREYGLPAVVG 576 (603)
T ss_pred eEeeecCCCeEEEEEEEeCCHHH---HHhccCceEEEeCCCCHHHHHHHHHheEEEEecCCCcchHHHHHHHcCCCEEEc
Confidence 5899999999999974 44333 345678899999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 581 CSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 581 v~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
+.+++ ..+++|+.|+|||++|.|++
T Consensus 577 v~~at------------~~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 577 TGNAT------------KRIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred CccHh------------hhcCCCCEEEEECCCCEEEE
Confidence 99887 78999999999999999975
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=99.66 E-value=9.2e-17 Score=191.56 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=98.3
Q ss_pred hhhhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEe
Q 039683 500 KVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVS 579 (983)
Q Consensus 500 ~vl~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~Vv 579 (983)
.++.+|.++++|+++|++++.... .++...+++.|||+++++|+|++.++++.||||+.||.|||+||+||++|||||+
T Consensus 480 ~vL~~G~~as~G~~~G~v~~~~~~-~~~~~~~~~~ILV~~~~~P~~~~~~~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVv 558 (590)
T PRK06354 480 AVVAKGQGIGRKSVSGKARVAKTA-AEVAKVNEGDILVTPSTDADMIPAIEKAAAIITEEGGLTSHAAVVGLRLGIPVIV 558 (590)
T ss_pred ccchhccccccccccceEEEeCCh-HhhccCCCCeEEEeCCCCHHHHHhHHhcEEEEEecCCCcchHHHHHHhcCCCEEE
Confidence 467799999999999999875432 3355678899999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCceEEeccEEeeCCCEEEEECCccEEEEcCCC
Q 039683 580 GCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGKQP 621 (983)
Q Consensus 580 Gv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~~~ 621 (983)
|+.+++ ..+++|++|+|||++|.||.|..+
T Consensus 559 g~~~~~------------~~l~~G~~v~vDg~~G~V~~G~~~ 588 (590)
T PRK06354 559 GVKNAT------------SLIKDGQIITVDAARGVVYSGHAS 588 (590)
T ss_pred eccchh------------hccCCCCEEEEECCCCEEEeceec
Confidence 999887 779999999999999999999754
No 21
>PRK05865 hypothetical protein; Provisional
Probab=99.62 E-value=9.2e-16 Score=189.62 Aligned_cols=104 Identities=29% Similarity=0.383 Sum_probs=93.6
Q ss_pred hhcCCCCCCCcEEEEEEcChhHHHHHHhcCCCeEEEecCCCcchHhhhhhhceEEEccCCccchHHHhhcccCceEEecc
Q 039683 502 VATGLPASPGAAVGQVVFSAEDAEAWHAQGKSAILVRTETSPEDIGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGC 581 (983)
Q Consensus 502 l~~G~~~s~G~a~G~v~~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~l~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv 581 (983)
..+|+++|+|.++|+++.... ++....++|.|||+++++|+|++.+.+++||||+.||.+||+||+||++|||||+|+
T Consensus 735 ~L~G~~~s~G~v~G~vrvv~~--~~~~~~~~g~ILVa~~tdp~~~~~~~~a~giVte~Gg~~SH~AIvARe~gIPaVvgv 812 (854)
T PRK05865 735 TLRGVGVCGGRVRGRVRIVRP--ETIDDLQPGEILVAEVTDVGYTAAFCYAAAVVTELGGPMSHAAVVAREFGFPCVVDA 812 (854)
T ss_pred cceeeeccCCccEEEEEEecH--HHhhhcCCCeEEEeCCCCHHHHHHHHHheEEEeccCCCccHHHHHHHHcCCCEEEcc
Confidence 358999999999999865432 333456789999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCceEEeccEEeeCCCEEEEECCccEEEEcC
Q 039683 582 SDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVILGK 619 (983)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~g~ 619 (983)
.+++ +.+++|++|+|||++|.||.-.
T Consensus 813 ~~at------------~~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 813 QGAT------------RFLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred ccHh------------hcCCCCCEEEEECCCcEEEEec
Confidence 9987 7899999999999999999864
No 22
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.60 E-value=7.4e-14 Score=151.48 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=112.3
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHH-------H-HHcCC--------CCCceEEEEEecHHHHHHHHHHHhh--CC
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKV-------F-SEMGS--------SLDYKVGTMIEIPRAALVADEIAKE--AE 873 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~-------~-~~~g~--------~~~~~vg~MIEtP~a~~~a~~ia~~--~D 873 (983)
-.+||+|||+|++|++++++.+++.-... + ..+|. ..++.+.+|||||.++.++++|++. +|
T Consensus 85 a~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd 164 (249)
T TIGR03239 85 FYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVD 164 (249)
T ss_pred CCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCC
Confidence 35899999999999999998886530000 0 01110 1157899999999999999999987 99
Q ss_pred EEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHH
Q 039683 874 FFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSV 953 (983)
Q Consensus 874 f~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~ 953 (983)
+++||+|||++.+ |.. .++.+ |.+..++.+++.+|++ +||++|+ .+.+++.+
T Consensus 165 ~l~iG~~DLs~sl-G~~------------------~~~~~----~~v~~a~~~v~~aa~a--~G~~~g~---~~~~~~~~ 216 (249)
T TIGR03239 165 GIFVGPSDLAAAL-GHL------------------GNPNH----PDVQKAIRHIFDRAAA--HGKPCGI---LAPVEADA 216 (249)
T ss_pred EEEEChHHHHHHc-CCC------------------CCCCC----HHHHHHHHHHHHHHHH--cCCCEEE---cCCCHHHH
Confidence 9999999999755 221 23444 6899999999999998 6999998 55899999
Q ss_pred HHHHHcCCCEEecCCCchHHHHHHhhh
Q 039683 954 AFFAEAGLDYVSCSPFRVPIARLAAAQ 980 (983)
Q Consensus 954 ~~l~~lG~~~~Sv~p~~i~~~r~a~a~ 980 (983)
..+++.|+++++++.|...+...+.++
T Consensus 217 ~~~~~~G~~~~~~~~D~~~l~~~~~~~ 243 (249)
T TIGR03239 217 RRYLEWGATFVAVGSDLGVFRSATQAL 243 (249)
T ss_pred HHHHHcCCCEEEEhHHHHHHHHHHHHH
Confidence 999999999999999999887666544
No 23
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.57 E-value=2.2e-13 Score=148.38 Aligned_cols=142 Identities=19% Similarity=0.201 Sum_probs=112.7
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHHH--------HHcCC--------CCCceEEEEEecHHHHHHHHHHHhh--CC
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKVF--------SEMGS--------SLDYKVGTMIEIPRAALVADEIAKE--AE 873 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~--------~~~g~--------~~~~~vg~MIEtP~a~~~a~~ia~~--~D 873 (983)
-.+||+|||+|++|++++++.+++.=...+ ..+|. ..++.+.+|||||.++.++++|++. +|
T Consensus 92 a~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd 171 (256)
T PRK10558 92 FYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDAIAATEGVD 171 (256)
T ss_pred CCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHHHhCCCCCc
Confidence 358999999999999999988875310000 00110 1157899999999999999999987 99
Q ss_pred EEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHH
Q 039683 874 FFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSV 953 (983)
Q Consensus 874 f~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~ 953 (983)
+++||+|||++.+ |.. .++.+ |.+..++.+++.+|++ +||++|+| +.+++.+
T Consensus 172 ~l~iG~~DLs~sl-G~~------------------~~~~~----~~v~~a~~~v~~aa~~--~G~~~g~~---~~~~~~~ 223 (256)
T PRK10558 172 GIFVGPSDLAAAL-GHL------------------GNASH----PDVQKAIQHIFARAKA--HGKPSGIL---APVEADA 223 (256)
T ss_pred EEEECHHHHHHHc-CCC------------------CCCCC----HHHHHHHHHHHHHHHH--cCCceEEc---CCCHHHH
Confidence 9999999999755 221 23444 5899999999999997 69999984 5789999
Q ss_pred HHHHHcCCCEEecCCCchHHHHHHhhhh
Q 039683 954 AFFAEAGLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 954 ~~l~~lG~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
..++++|+++++++.|...+.+.+.++.
T Consensus 224 ~~~~~~G~~~v~~~~D~~~l~~~~~~~~ 251 (256)
T PRK10558 224 RRYLEWGATFVAVGSDLGVFRSATQALA 251 (256)
T ss_pred HHHHHcCCCEEEEchHHHHHHHHHHHHH
Confidence 9999999999999999998877665543
No 24
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.53 E-value=3e-13 Score=147.73 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=113.6
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHH--------H-HHcCC--------CCCceEEEEEecHHHHHHHHHHHhh--CC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKV--------F-SEMGS--------SLDYKVGTMIEIPRAALVADEIAKE--AE 873 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~--------~-~~~g~--------~~~~~vg~MIEtP~a~~~a~~ia~~--~D 873 (983)
-+||+|||+|++|++++++.+++.-... + ..+|. .-.+.+.+|||||.++.++++|++. +|
T Consensus 92 ~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd 171 (267)
T PRK10128 92 QTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEILDVEGID 171 (267)
T ss_pred CeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCC
Confidence 5899999999999999999987541000 0 01111 1158999999999999999999998 99
Q ss_pred EEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHH
Q 039683 874 FFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSV 953 (983)
Q Consensus 874 f~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~ 953 (983)
+++||+|||++.+ |+. .++.| |.|..+|++++++|++ +||++|+ ++.+|+.+
T Consensus 172 ~i~~G~~Dls~sl-g~~------------------~~~~~----pev~~ai~~v~~a~~~--~Gk~~G~---~~~~~~~a 223 (267)
T PRK10128 172 GVFIGPADLSASL-GYP------------------DNAGH----PEVQRIIETSIRRIRA--AGKAAGF---LAVDPDMA 223 (267)
T ss_pred EEEECHHHHHHHc-CCC------------------CCCCC----HHHHHHHHHHHHHHHH--cCCeEEE---cCCCHHHH
Confidence 9999999999855 331 23334 6999999999999997 6999998 77899999
Q ss_pred HHHHHcCCCEEecCCCchHHHHHHhhh
Q 039683 954 AFFAEAGLDYVSCSPFRVPIARLAAAQ 980 (983)
Q Consensus 954 ~~l~~lG~~~~Sv~p~~i~~~r~a~a~ 980 (983)
.+++++|+++|+++.|...+.+.+.+.
T Consensus 224 ~~~~~~G~~~v~~g~D~~~l~~~~~~~ 250 (267)
T PRK10128 224 QKCLAWGANFVAVGVDTMLYTDALDQR 250 (267)
T ss_pred HHHHHcCCcEEEEChHHHHHHHHHHHH
Confidence 999999999999999998887666544
No 25
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.7e-13 Score=142.80 Aligned_cols=141 Identities=20% Similarity=0.236 Sum_probs=118.8
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHH-------HHHH-H-HHcCC--CC------CceEEEEEecHHHHHHHHHHHhh--CC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNV-------ATKV-F-SEMGS--SL------DYKVGTMIEIPRAALVADEIAKE--AE 873 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~-------~~~~-~-~~~g~--~~------~~~vg~MIEtP~a~~~a~~ia~~--~D 873 (983)
..+++|||+|+||++++++..++. ...+ + +..|. +| ++.+.+||||..++.++|+|++. +|
T Consensus 91 qtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVD 170 (255)
T COG3836 91 QTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVD 170 (255)
T ss_pred ceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCC
Confidence 589999999999999999998754 1000 1 12221 01 58999999999999999999998 99
Q ss_pred EEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHH
Q 039683 874 FFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSV 953 (983)
Q Consensus 874 f~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~ 953 (983)
+++||+.||++.+- .. ++|-| |.|.+.|.+++.+.++ +||..|| ++.+|+.+
T Consensus 171 gvFiGPaDLaas~G-----~~--------------gn~~h----peV~~aI~~~~~~i~a--aGKaagi---l~~~p~~a 222 (255)
T COG3836 171 GVFIGPADLAASLG-----HL--------------GNPGH----PEVQAAIEHIIARIRA--AGKAAGI---LAADPADA 222 (255)
T ss_pred eEEECHHHHHHHcC-----CC--------------CCCCC----HHHHHHHHHHHHHHHh--cCCcccc---ccCCHHHH
Confidence 99999999998652 11 57777 6999999999999987 6999999 99999999
Q ss_pred HHHHHcCCCEEecCCCchHHHHHHhhhh
Q 039683 954 AFFAEAGLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 954 ~~l~~lG~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
..++.+|+++|.+..|...+.+.+.+++
T Consensus 223 ~~yl~lGa~fvavG~D~~l~~~a~~~l~ 250 (255)
T COG3836 223 RRYLALGATFVAVGSDTGLLRRAAEALL 250 (255)
T ss_pred HHHHHhCCeEEEEeccHHHHHHHHHHHH
Confidence 9999999999999999999998887765
No 26
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.48 E-value=2.7e-12 Score=139.54 Aligned_cols=138 Identities=22% Similarity=0.213 Sum_probs=110.9
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCC--------------------CCceEEEEEecHHHHHHHHHHHhh-
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSS--------------------LDYKVGTMIEIPRAALVADEIAKE- 871 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~--------------------~~~~vg~MIEtP~a~~~a~~ia~~- 871 (983)
-+||+|||+|++|++++++.+++.-.. .+|.. ..+.+.+|||||.++.++++|++.
T Consensus 86 ~gIivP~v~s~e~a~~~v~~~~y~P~G---~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~~ 162 (249)
T TIGR02311 86 QTLLVPMIETAEQAEAAVAATRYPPMG---IRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAVE 162 (249)
T ss_pred CEEEecCcCCHHHHHHHHHHcCCCCCC---cCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCCC
Confidence 589999999999999999988743110 11110 036799999999999999999987
Q ss_pred -CCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCCh
Q 039683 872 -AEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEP 950 (983)
Q Consensus 872 -~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p 950 (983)
+|+++||++||++.+ |..+ ++.| |.+...++++.++|++ ++|..|+ .++++
T Consensus 163 gvd~l~~G~~DLs~sl-G~~~------------------~~~~----~~~~~a~~~v~~~~~~--a~~~~Gi---~~~~~ 214 (249)
T TIGR02311 163 GVDGVFIGPADLAASM-GHLG------------------NPSH----PEVQAAIDDAIERIKA--AGKAAGI---LTADP 214 (249)
T ss_pred CCcEEEECHHHHHHhc-CCCC------------------CCCC----hHHHHHHHHHHHHHHH--cCCceee---cCCCH
Confidence 999999999999865 3321 3333 4788888989899887 5899988 67899
Q ss_pred HHHHHHHHcCCCEEecCCCchHHHHHHhhhh
Q 039683 951 SSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 981 (983)
Q Consensus 951 ~~~~~l~~lG~~~~Sv~p~~i~~~r~a~a~~ 981 (983)
+.+..++++|+++++++.|...+.+.+.++.
T Consensus 215 ~~~~~~~~~G~~~~~~~~D~~~l~~~~~~~~ 245 (249)
T TIGR02311 215 KLARQYLKLGALFVAVGVDTTLLARGAEALA 245 (249)
T ss_pred HHHHHHHHcCCCEEEEchHHHHHHHHHHHHH
Confidence 9999999999999999999998877666543
No 27
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.16 E-value=7e-10 Score=118.67 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=90.2
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCC---CCceEEEEEecHHHHHHHHHHHhh--CCEEEEcchhhhhhh
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSS---LDYKVGTMIEIPRAALVADEIAKE--AEFFSFGTNDLTQMT 886 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~---~~~~vg~MIEtP~a~~~a~~ia~~--~Df~sIGtNDLtq~~ 886 (983)
.-+||+|||++++|++++.+.+++.- .|.. -.+.+.+|||||.++.++++|++. +|+++||++||+..+
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~l 158 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAALRYPP------AGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASL 158 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHHSHTT------TCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHT
T ss_pred CCeeeccccCcHHHHHHHHHHHhhcc------cccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhh
Confidence 35899999999999999998876542 1221 158999999999999999999976 999999999999765
Q ss_pred hcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCC-eEEEcCCCCCChHHHHHHHHcCCCEEe
Q 039683 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSL-KVGICGEHGGEPSSVAFFAEAGLDYVS 965 (983)
Q Consensus 887 la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~-~v~iCGe~a~~p~~~~~l~~lG~~~~S 965 (983)
|+.+ ++.+ +.+..++++++.+|++ +|+ +++. ...++.....|...|.+.+.
T Consensus 159 -G~~~------------------~~~~----~~~~~a~~~v~~aa~a--~g~~~i~~---~~~~~~d~~~~~~~~~~~~~ 210 (221)
T PF03328_consen 159 -GIPG------------------QPDH----PEVLEARSKVVLAARA--AGKPAIDG---VFPDFEDAEGLEAEGFRARA 210 (221)
T ss_dssp -TTTT------------------STTS----HHHHHHHHHHHHHHHH--TTEEEEEE---EESSSSHHHHHHHHHHHCCE
T ss_pred -ccCC------------------CCcc----hHHHHHHHHHHHHHHH--cCCCeEEE---eeCCHHHHHHHHHHHHHHHH
Confidence 4422 2333 5888999999999998 588 4444 44577778888887776665
Q ss_pred cC
Q 039683 966 CS 967 (983)
Q Consensus 966 v~ 967 (983)
+.
T Consensus 211 ~G 212 (221)
T PF03328_consen 211 LG 212 (221)
T ss_dssp EE
T ss_pred Hc
Confidence 54
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=98.96 E-value=7.1e-08 Score=107.38 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=98.7
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh---CCEEEEcchhhhhhhhc
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE---AEFFSFGTNDLTQMTFG 888 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~---~Df~sIGtNDLtq~~la 888 (983)
-.||+|||++++|++.+.+.++... ...|.+. .+.+.+|||||.++.++++|+.. +|.++||++||+..+ |
T Consensus 87 ~givlPKv~s~~~v~~~~~~l~~~~----~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G~~Dls~~l-G 161 (288)
T TIGR01588 87 DVVRLPKTDTAEDIHELEKLIERIE----KEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIALGAEDYVTDM-K 161 (288)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHH----HhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeCHHHHHHHc-C
Confidence 4799999999999999988876422 2334433 57899999999999999999943 899999999999765 5
Q ss_pred CcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEE---cCCCCCChH---HHHHHHHcCCC
Q 039683 889 YSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGI---CGEHGGEPS---SVAFFAEAGLD 962 (983)
Q Consensus 889 ~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~i---CGe~a~~p~---~~~~l~~lG~~ 962 (983)
+.+ +|.+ +.+..++.+++.+|++ +|+++ | +-+...... .+..-..+||+
T Consensus 162 ~~~------------------~~~~----~~~~~ar~~iv~aara--ag~~~-id~v~~~~~d~~~l~~~~~~~~~~Gf~ 216 (288)
T TIGR01588 162 TSR------------------SPDG----TELFYARCAILHAARA--AGIAA-FDTVYSDVNNEEGFLAEAQLIKQLGFD 216 (288)
T ss_pred CCc------------------CCCc----hHHHHHHHHHHHHHHH--cCCCc-ccCCccCcCCHHHHHHHHHHHHHcCCC
Confidence 433 2222 3677788888888887 58875 4 222222222 23334689997
Q ss_pred -EEecCCCchHHHHHH
Q 039683 963 -YVSCSPFRVPIARLA 977 (983)
Q Consensus 963 -~~Sv~p~~i~~~r~a 977 (983)
.....|..|+.+..+
T Consensus 217 Gk~~IHP~Qi~~in~~ 232 (288)
T TIGR01588 217 GKSLINPRQIELVHKV 232 (288)
T ss_pred ceeccCHHHHHHHHHh
Confidence 788899999887754
No 29
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=98.52 E-value=1e-06 Score=104.41 Aligned_cols=118 Identities=20% Similarity=0.095 Sum_probs=96.7
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|++|+|+++++++.+++.+.. .+.. .+.+.+|||+|.|+.++++|++.+|++.||.+||+..+
T Consensus 186 d~I~lskV~sa~dv~~l~~~l~~--------~~~~-~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~l------ 250 (473)
T TIGR01064 186 DMVAASFVRTAEDVLEVREVLGE--------KGAK-DVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEI------ 250 (473)
T ss_pred CEEEECCCCCHHHHHHHHHHHHh--------cCCC-CceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhc------
Confidence 47999999999999998876632 2211 47899999999999999999999999999999999644
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCC----CC-------ChHHHHHHHHcCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH----GG-------EPSSVAFFAEAGL 961 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~----a~-------~p~~~~~l~~lG~ 961 (983)
+ + +.+..+.++++.+|++ +||++++..+| .. +...+..++..|+
T Consensus 251 ----------------g---~----~~l~~~~~~ii~aara--ag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~ 305 (473)
T TIGR01064 251 ----------------P---A----EEVPIAQKKMIRKCNR--AGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGT 305 (473)
T ss_pred ----------------C---c----HHHHHHHHHHHHHHHH--cCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCC
Confidence 1 1 3677888899999987 59999996642 12 7788999999999
Q ss_pred CEEecCCCc
Q 039683 962 DYVSCSPFR 970 (983)
Q Consensus 962 ~~~Sv~p~~ 970 (983)
|.+.++.+.
T Consensus 306 d~v~ls~et 314 (473)
T TIGR01064 306 DAVMLSGET 314 (473)
T ss_pred CEEEEcchh
Confidence 999997765
No 30
>PRK05826 pyruvate kinase; Provisional
Probab=98.47 E-value=6.3e-07 Score=105.37 Aligned_cols=136 Identities=26% Similarity=0.192 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHH
Q 039683 787 PELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVAD 866 (983)
Q Consensus 787 p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~ 866 (983)
|-+.+-....|.+|.. .| --.|++|||++++|++++++.+.. .+.+ .+.+.+|||+|.|+.+++
T Consensus 169 p~lte~D~~~i~~ald----~g---~d~I~~sfV~saedv~~l~~~l~~--------~~~~-~~~iiakIEt~eav~nld 232 (465)
T PRK05826 169 PALTEKDKADIKFAAE----QG---VDYIAVSFVRSAEDVEEARRLLRE--------AGCP-HAKIIAKIERAEAVDNID 232 (465)
T ss_pred CCCChhhHHHHHHHHH----CC---CCEEEECCCCCHHHHHHHHHHHHH--------cCCc-CceEEEEEcCHHHHHhHH
Confidence 5455555556666543 23 358999999999999999866532 2321 478999999999999999
Q ss_pred HHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCC
Q 039683 867 EIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946 (983)
Q Consensus 867 ~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~ 946 (983)
+|++.+|++.||..||...+ .. +.|..+.++++++|++ +|||+++..+|
T Consensus 233 eI~~~~DgImIgrgDLg~el----------------------g~-------~~v~~~qk~Ii~~c~~--~gKpvi~ATqm 281 (465)
T PRK05826 233 EIIEASDGIMVARGDLGVEI----------------------PD-------EEVPGLQKKIIRKARE--AGKPVITATQM 281 (465)
T ss_pred HHHHHcCEEEECcchhhhhc----------------------Cc-------HhHHHHHHHHHHHHHH--cCCCEEEECHH
Confidence 99999999999999999744 11 3566788899999987 69999997655
Q ss_pred CC-----------ChHHHHHHHHcCCCEEecCCC
Q 039683 947 GG-----------EPSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 947 a~-----------~p~~~~~l~~lG~~~~Sv~p~ 969 (983)
-. +-..+...+--|.|.+..|.+
T Consensus 282 LeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~E 315 (465)
T PRK05826 282 LESMIENPRPTRAEVSDVANAVLDGTDAVMLSGE 315 (465)
T ss_pred HHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccc
Confidence 31 122334456668888877743
No 31
>PLN02623 pyruvate kinase
Probab=98.43 E-value=2.4e-06 Score=101.85 Aligned_cols=144 Identities=20% Similarity=0.157 Sum_probs=108.7
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 039683 777 FRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI 856 (983)
Q Consensus 777 ~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI 856 (983)
++|..+.+ |-+.+-=.+.|.-+.. +|+ --|-+.||.++++++++++.++. .+. ++.+.+||
T Consensus 266 lpg~~~~l--p~lTekD~~di~f~~~----~~v---D~ialSFVr~a~DV~~~r~~l~~--------~~~--~~~iiakI 326 (581)
T PLN02623 266 VRGKSATL--PSITEKDWEDIKFGVE----NKV---DFYAVSFVKDAQVVHELKDYLKS--------CNA--DIHVIVKI 326 (581)
T ss_pred CCCCcCCC--CCCCHHHHHHHHHHHH----cCC---CEEEECCCCCHHHHHHHHHHHHH--------cCC--cceEEEEE
Confidence 45555433 4444444445433322 232 46999999999999999887633 121 47899999
Q ss_pred ecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCC
Q 039683 857 EIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936 (983)
Q Consensus 857 EtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~ 936 (983)
|++.|+.++++|++.+|++.||.+||+..+ |+ +.|..++++++++|++ +
T Consensus 327 Et~eaVeNldeIl~g~DgImIgrgDLgvel------------------------g~-----~~v~~~qk~Ii~~~~~--~ 375 (581)
T PLN02623 327 ESADSIPNLHSIITASDGAMVARGDLGAEL------------------------PI-----EEVPLLQEEIIRRCRS--M 375 (581)
T ss_pred CCHHHHHhHHHHHHhCCEEEECcchhhhhc------------------------Cc-----HHHHHHHHHHHHHHHH--h
Confidence 999999999999999999999999999643 11 3677889999999987 6
Q ss_pred CCeEEEcCC------CCCCh-----HHHHHHHHcCCCEEecCCCc
Q 039683 937 SLKVGICGE------HGGEP-----SSVAFFAEAGLDYVSCSPFR 970 (983)
Q Consensus 937 g~~v~iCGe------~a~~p-----~~~~~l~~lG~~~~Sv~p~~ 970 (983)
|||+++..+ ....| ..+..++..|++.+.++.+.
T Consensus 376 gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Et 420 (581)
T PLN02623 376 GKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 420 (581)
T ss_pred CCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchh
Confidence 999998552 33577 48999999999999998764
No 32
>PRK03955 hypothetical protein; Reviewed
Probab=98.08 E-value=3e-06 Score=82.90 Aligned_cols=48 Identities=21% Similarity=0.406 Sum_probs=42.1
Q ss_pred ceEEEccCC-ccchHHHhhcccCceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 553 AGILTARGG-MTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 553 ~GiVt~~Gg-~tSHaAIvAR~lgIP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
+|||.++.+ ..+|.||+| |||+|.+.. + +.|++||+|+||+++|.|..
T Consensus 80 ~aiI~~~~~~ils~GaIvA---gIP~V~~~~--~------------~~l~~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 80 KAIINLEAEPIVATGAIIS---GIPLVDKVD--I------------SKLKDGDRVVVDGDEGEVEI 128 (131)
T ss_pred eEEEEecCCceeEeeeeec---CCceEcccc--c------------eecCCCCEEEEeCCCCEEEE
Confidence 666877765 999999999 999999876 3 68999999999999999975
No 33
>PTZ00300 pyruvate kinase; Provisional
Probab=98.03 E-value=4.3e-05 Score=89.67 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=100.8
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 039683 777 FRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI 856 (983)
Q Consensus 777 ~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI 856 (983)
++|+.+.+ |-+-+-..+.|..|.. .|+ -.|.+|||+++++++++++.+.. .|. .+.+.++|
T Consensus 135 lp~~~~~l--~~ltekD~~dI~~ald----~gv---d~I~~SfVrsaeDv~~vr~~l~~--------~~~--~~~IiaKI 195 (454)
T PTZ00300 135 LPGCDVDL--PAVSAKDCADLQFGVE----QGV---DMIFASFIRSAEQVGEVRKALGA--------KGG--DIMIICKI 195 (454)
T ss_pred cCCCccCC--CCCChhhHHHHHHHHH----CCC---CEEEECCCCCHHHHHHHHHHHHh--------cCC--CceEEEEE
Confidence 44554433 4444444556655543 233 47999999999999999987622 232 47899999
Q ss_pred ecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCC
Q 039683 857 EIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936 (983)
Q Consensus 857 EtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~ 936 (983)
|+|.|+.++++|++.+|++.||..||...+ |+ +.|-.+.+++++.|++ +
T Consensus 196 Et~eav~nldeI~~~~DgImVaRGDLgvei------------------------~~-----e~vp~~Qk~Ii~~~~~--~ 244 (454)
T PTZ00300 196 ENHQGVQNIDSIIEESDGIMVARGDLGVEI------------------------PA-----EKVVVAQKILISKCNV--A 244 (454)
T ss_pred CCHHHHHhHHHHHHhCCEEEEecchhhhhc------------------------Ch-----HHHHHHHHHHHHHHHH--c
Confidence 999999999999999999999999999633 11 3666788889999987 5
Q ss_pred CCeEEEcCCCCC-----------ChHHHHHHHHcCCCEEecCCC
Q 039683 937 SLKVGICGEHGG-----------EPSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 937 g~~v~iCGe~a~-----------~p~~~~~l~~lG~~~~Sv~p~ 969 (983)
|||+-+--+|-. +-..+...+--|.|.+..|.+
T Consensus 245 gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~E 288 (454)
T PTZ00300 245 GKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGE 288 (454)
T ss_pred CCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEech
Confidence 999988655531 112333345567777766543
No 34
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=97.96 E-value=4.3e-05 Score=90.43 Aligned_cols=116 Identities=21% Similarity=0.096 Sum_probs=91.0
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|-+.||+++++++.+++.++. .+ ..+.+.+|||++.|+.++++|++.+|++.||..||...+
T Consensus 189 D~ia~SFV~~~~di~~~r~~l~~--------~~--~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~------ 252 (480)
T cd00288 189 DMIFASFVRKASDVLEIREVLGE--------KG--KDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEI------ 252 (480)
T ss_pred CEEEECCCCCHHHHHHHHHHHHh--------cC--CCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhc------
Confidence 47999999999999999987632 22 247899999999999999999999999999999999643
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC-----------ChHHHHHHHHcCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG-----------EPSSVAFFAEAGL 961 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~-----------~p~~~~~l~~lG~ 961 (983)
|+ +.|..+.+++++.|++ +|||+.+..+|-. +-..+...+--|.
T Consensus 253 ------------------g~-----~~v~~~qk~ii~~~~~--~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~ 307 (480)
T cd00288 253 ------------------PA-----EEVFLAQKMLIAKCNL--AGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGT 307 (480)
T ss_pred ------------------Ch-----HHHHHHHHHHHHHHHH--cCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCC
Confidence 11 4788899999999997 6999999776632 1123334455688
Q ss_pred CEEecCCC
Q 039683 962 DYVSCSPF 969 (983)
Q Consensus 962 ~~~Sv~p~ 969 (983)
|.+..|.+
T Consensus 308 D~vmLS~E 315 (480)
T cd00288 308 DCVMLSGE 315 (480)
T ss_pred cEEEEech
Confidence 88777544
No 35
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.93 E-value=0.00067 Score=80.34 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=96.2
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh----CCEEEEcchhhhhhhh
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE----AEFFSFGTNDLTQMTF 887 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~----~Df~sIGtNDLtq~~l 887 (983)
+.|++|++.+++|++.+.+.+..+.. ..|++. .+++++|||||.|++++++|+.. +.++..|.+|++-.+.
T Consensus 186 pyi~LPKves~~Ev~~~~~vf~~~E~----~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli 261 (511)
T cd00727 186 PYFYLPKMESHLEARLWNDVFVFAQD----YLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFI 261 (511)
T ss_pred cEEecCCCCCHHHHHHHHHHHHHHHH----HcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHH
Confidence 49999999999999999888765433 457764 58999999999999999999964 8899999999998875
Q ss_pred cCcCCCccccchhhhccCCCCCCCcccCCHHHHHHH-HHHHHHHhhhcCCCCeEEEcCCCCC-----Ch-----------
Q 039683 888 GYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQL-IKIATERGRAARPSLKVGICGEHGG-----EP----------- 950 (983)
Q Consensus 888 a~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~l-I~~~~~~a~~~~~g~~v~iCGe~a~-----~p----------- 950 (983)
...|...+.+.+.+. .+--..| +... .+.++.+|++ .|+. .|=|-.+- |+
T Consensus 262 ~~~~~~~~~v~pdr~--~v~m~~~--------~l~Ay~~llV~aa~a--~G~~-AIdGm~a~ip~kdd~~~n~~~l~~~r 328 (511)
T cd00727 262 KKFRNHPDFVLPDRA--QVTMTVP--------FMRAYSELLIKTCHR--RGAH-AMGGMAAQIPIKDDPAANEAALAKVR 328 (511)
T ss_pred HhhccCCCccCCccc--ccccchH--------HHHHHHHHHHHHHHH--cCCC-cccchhhcCCcccchhhHHHHHHHHH
Confidence 554332211111110 0000112 3333 4446667776 3654 23242111 22
Q ss_pred HHHHHHHHcCCC-EEecCCCchHHHHHHh
Q 039683 951 SSVAFFAEAGLD-YVSCSPFRVPIARLAA 978 (983)
Q Consensus 951 ~~~~~l~~lG~~-~~Sv~p~~i~~~r~a~ 978 (983)
.....=..+|++ .....|..|+++..+=
T Consensus 329 ~dk~~~~~lGfDGkwviHP~qV~ianevF 357 (511)
T cd00727 329 ADKLREATAGHDGTWVAHPGLVPVAMEVF 357 (511)
T ss_pred HHHHHHHhCCCCcccccCHHHHHHHHHHH
Confidence 111222578998 6667888888876553
No 36
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.90 E-value=0.00022 Score=84.96 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=100.3
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh----CCEEEEcchhhhhhh
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE----AEFFSFGTNDLTQMT 886 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~----~Df~sIGtNDLtq~~ 886 (983)
-+.|++|+|.+++|++.+.+++..+. ...|++. .+++++||||+.|++++++|+.. +.++.+|..|++-.+
T Consensus 185 gpyi~LPKves~~Ev~~~~~~~~~~E----~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sl 260 (511)
T cd00480 185 GPYFYLPKMESPLEARLWNDVFSRAE----DYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSE 260 (511)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHHH----HhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHh
Confidence 37999999999999999998875542 2456765 58999999999999999999976 779999999999888
Q ss_pred hcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeE--EEcCCCC--CCh-----------H
Q 039683 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKV--GICGEHG--GEP-----------S 951 (983)
Q Consensus 887 la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v--~iCGe~a--~~p-----------~ 951 (983)
....++.++...+.+.. .. +..|-+...-+.++.+|++ .|+.. +++.... +|| .
T Consensus 261 i~~~~~~~~~~~pd~~~-----~~----m~~~~l~ay~~~lv~aa~a--~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~ 329 (511)
T cd00480 261 IKTFRNHPDFVLPDRAK-----VT----MTSPFMRAYEKLLVKTCHR--RGAHAMGGMAAQIPIKGDPAANEAAMAKVRA 329 (511)
T ss_pred ccccccCccccCCcccc-----cc----cccHHHHHHHHHHHHHHHH--cCCCccccchhhccccCCcccchhHHHHHHH
Confidence 66665443222222100 00 1112233344457777876 36643 2222222 111 1
Q ss_pred HHHHHHHcCCC-EEecCCCchHHHHHHhh
Q 039683 952 SVAFFAEAGLD-YVSCSPFRVPIARLAAA 979 (983)
Q Consensus 952 ~~~~l~~lG~~-~~Sv~p~~i~~~r~a~a 979 (983)
....=..+|++ .....|..|+.+..+=.
T Consensus 330 dk~~~~~~GfdGkwviHP~qV~~~n~vF~ 358 (511)
T cd00480 330 DKLREAKAGHDGTWVAHPGLAPLAALVFH 358 (511)
T ss_pred HHHHHHhCCCCcccccCHHHHHHHHHHHh
Confidence 22233678998 66678888888876643
No 37
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=97.78 E-value=0.00035 Score=82.58 Aligned_cols=151 Identities=22% Similarity=0.188 Sum_probs=94.9
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh----CCEEEEcchhhhhhhh
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE----AEFFSFGTNDLTQMTF 887 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~----~Df~sIGtNDLtq~~l 887 (983)
..|++|+|.+++|++.+.+.+..+.+ ..|++. .+++++|||||.|++++++|+.. +.++.+|.+|++-.+.
T Consensus 187 p~i~LPKves~~Ev~~~~~vf~~aE~----~lglp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~i 262 (511)
T TIGR01344 187 PYFYLPKLESHQEARLWNDVFHFAQD----FLGLPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFI 262 (511)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHHHH----hcCCCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHH
Confidence 59999999999999999888765433 456664 58999999999999999999964 8899999999995444
Q ss_pred cCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCC-----CChHH----H-----
Q 039683 888 GYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHG-----GEPSS----V----- 953 (983)
Q Consensus 888 a~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a-----~~p~~----~----- 953 (983)
..-|...+...+.+. .+-...||. ....+..+.+||+ .|+. .|=|-.+ .||+. .
T Consensus 263 k~~~~~~~~~~pdr~--~~~m~~~~l-------~Ay~~llV~aara--~G~~-AIdGm~a~ip~k~D~~~n~~al~~vr~ 330 (511)
T TIGR01344 263 KTLRNLPEFVLPDRD--AVTMTKPFL-------NAYSKLLIQTCHR--RGAH-AMGGMAAFIPIKGDPAANEAAMNKVRA 330 (511)
T ss_pred HHHhhCCCCcCCccc--ccccccHHH-------HHHHHHHHHHHHH--cCCC-ccCchhccCCcccChhhHHHHHHHHHH
Confidence 322322211111110 000012322 2224455566776 3542 2224222 15443 2
Q ss_pred --HHHHHcCCC-EEecCCCchHHHHHHhh
Q 039683 954 --AFFAEAGLD-YVSCSPFRVPIARLAAA 979 (983)
Q Consensus 954 --~~l~~lG~~-~~Sv~p~~i~~~r~a~a 979 (983)
..=..+|+| .-...|..|+++..+-.
T Consensus 331 dk~re~~lGfDGkwviHP~qV~ianevF~ 359 (511)
T TIGR01344 331 DKIREAKNGHDGTWVAHPDLVPIAMEVFN 359 (511)
T ss_pred HHHHHHhCCCCccccCCHHHHHHHHHHHH
Confidence 122589998 55667888888766543
No 38
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.00028 Score=77.87 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=102.8
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 039683 777 FRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI 856 (983)
Q Consensus 777 ~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI 856 (983)
+-.+|.-=-+.+....-+.++.+++ .-.||+|+++++.++..+...+..... ..|.+ .+.+||
T Consensus 56 ~~~VRIN~l~t~~g~~Dl~av~~~~----------~d~v~LPK~e~~~~v~~~~~~l~~~~~----~~~~~---~l~a~i 118 (283)
T COG2301 56 EVVVRINGLDTPWGADDLAAVVRSA----------VDGVVLPKVESAADVEELDQLLREAEA----AAGRE---ILIALI 118 (283)
T ss_pred ceEEEecCCCChhhHHHHHHHHhcC----------CCEEEccCcCchHHHHHHHHHhhhhhc----cccch---hhHHhh
Confidence 4556664334555555577777662 348999999999999987766543211 11211 499999
Q ss_pred ecHHHHHHHHHHHhh--C-CEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhh
Q 039683 857 EIPRAALVADEIAKE--A-EFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRA 933 (983)
Q Consensus 857 EtP~a~~~a~~ia~~--~-Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~ 933 (983)
|||.+++++.+|+.. . .++++|.|||+..+ |+.|...+ . +-+.....+++.+|+.
T Consensus 119 ETa~gv~~~~eIA~a~~~l~~l~~Ga~Dl~~~~-g~~~~~~~--------------~-------~~l~~ar~~iv~Aara 176 (283)
T COG2301 119 ETARGVLNAEEIAAASGRLVGLAFGANDLAADL-GARRSPDG--------------T-------DPLRYARAMIVLAARA 176 (283)
T ss_pred hcHHHHhCHHHHhcCccceeeeEecHHHHHHHh-CCCCCCCC--------------c-------chHHHHHHHHHHHHHH
Confidence 999999999999998 3 89999999999644 44443210 0 1344555666666765
Q ss_pred cCCCCeE--EEcCCCCCChHHHH----HHHHcCCC-EEecCCCchHHHHHH
Q 039683 934 ARPSLKV--GICGEHGGEPSSVA----FFAEAGLD-YVSCSPFRVPIARLA 977 (983)
Q Consensus 934 ~~~g~~v--~iCGe~a~~p~~~~----~l~~lG~~-~~Sv~p~~i~~~r~a 977 (983)
+|+.. ++|... .||+... .-..+||+ ..+.+|++|+.+..+
T Consensus 177 --~Gi~a~D~V~~d~-~d~~g~~~e~~~a~~~Gf~GK~~IHP~QI~~vn~a 224 (283)
T COG2301 177 --AGLAAIDGVYTDI-NDPEGFAREAAQAAALGFDGKTCIHPSQIEVVNRA 224 (283)
T ss_pred --cCCCccccccccc-CCHHHHHHHHHHHHHcCCCcccccChhHHHHHHHh
Confidence 36643 234433 3444332 23577876 566778888777654
No 39
>PRK09255 malate synthase; Validated
Probab=97.69 E-value=0.00054 Score=81.46 Aligned_cols=148 Identities=19% Similarity=0.159 Sum_probs=94.5
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh----CCEEEEcchhhhhhhh
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE----AEFFSFGTNDLTQMTF 887 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~----~Df~sIGtNDLtq~~l 887 (983)
+.|++|++.+++|++.+.+.+..+.. ..|++. .+++++|||||.|++++++|+.. +.++..|.+|++-.+.
T Consensus 207 p~i~LPKves~~Ev~~~~~vf~~~E~----~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 207 PYFYLPKLESHLEARLWNDVFVFAED----RLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred cEEeccCCCCHHHHHHHHHHHHHHHH----hcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHH
Confidence 59999999999999999888865533 457764 68999999999999999999965 7899999999996533
Q ss_pred cCcCCCccccchhhhccCCCCCCCcccCCHHHHHHH-HHHHHHHhhhcCCCCeEEEcCCCC--C---ChH----------
Q 039683 888 GYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQL-IKIATERGRAARPSLKVGICGEHG--G---EPS---------- 951 (983)
Q Consensus 888 a~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~l-I~~~~~~a~~~~~g~~v~iCGe~a--~---~p~---------- 951 (983)
..-|...+...+.+. .+--..|| ... .+.++.+|++ +|+. .|=|-.+ . |++
T Consensus 283 k~~~~~~~~~~pdR~--~v~m~~~~--------l~Ay~~llV~aara--~G~~-AIdGm~a~ip~k~D~~~n~~a~~g~r 349 (531)
T PRK09255 283 KTLKNHPDFVLPDRA--QVTMTKPF--------MRAYSRLLIKTCHK--RGAH-AMGGMAAFIPIKNDPEANEAALAKVR 349 (531)
T ss_pred HHhccCCCCcCCccc--ccccchHH--------HHHHHHHHHHHHHH--cCCC-ccCchhhcCCcccChhhhHHHHHHHH
Confidence 222222110111110 00001232 233 4455566776 3653 3324322 1 442
Q ss_pred -HHHHHHHcCCC-EEecCCCchHHHHHH
Q 039683 952 -SVAFFAEAGLD-YVSCSPFRVPIARLA 977 (983)
Q Consensus 952 -~~~~l~~lG~~-~~Sv~p~~i~~~r~a 977 (983)
....=..+|++ .....|..|+++..+
T Consensus 350 ~dk~r~~~lGfDGkwviHP~qV~ianev 377 (531)
T PRK09255 350 ADKEREANDGHDGTWVAHPGLVPTAMEV 377 (531)
T ss_pred HHHHHHHhCCCCcceecCHHHHHHHHHH
Confidence 12223678998 666788888887765
No 40
>PRK09206 pyruvate kinase; Provisional
Probab=97.53 E-value=0.00044 Score=81.60 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=100.6
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 039683 777 FRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI 856 (983)
Q Consensus 777 ~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI 856 (983)
++|..+.+ |-+.+-=.+.|.=+.. +|+ --|-+.||+++++++.+++.+.. .+.. .+.+.+||
T Consensus 160 ~p~~~~~l--p~ltekD~~di~f~~~----~~v---D~ia~SFVr~~~Dv~~~r~~l~~--------~~~~-~~~iiaKI 221 (470)
T PRK09206 160 LPGVSIAL--PALAEKDKQDLIFGCE----QGV---DFVAASFIRKRSDVLEIREHLKA--------HGGE-NIQIISKI 221 (470)
T ss_pred ccCcccCC--CCCCHHHHHHHHHHHH----cCC---CEEEEcCCCCHHHHHHHHHHHHH--------cCCC-CceEEEEE
Confidence 34544433 4444444455533322 333 47999999999999998876532 2211 47899999
Q ss_pred ecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCC
Q 039683 857 EIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936 (983)
Q Consensus 857 EtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~ 936 (983)
|+|.|+.++++|++.+|++.||..||...+ |+ +.|-.+.+++++.|++ +
T Consensus 222 Et~eav~nldeIl~~~DgImVaRGDLgvel------------------------g~-----e~vp~~qk~ii~~~~~--~ 270 (470)
T PRK09206 222 ENQEGLNNFDEILEASDGIMVARGDLGVEI------------------------PV-----EEVIFAQKMMIEKCNR--A 270 (470)
T ss_pred CCHHHHHhHHHHHHhCCEEEECcchhhhhc------------------------CH-----HHHHHHHHHHHHHHHH--c
Confidence 999999999999999999999999999633 11 3666788999999987 5
Q ss_pred CCeEEEcCCCCC-----------ChHHHHHHHHcCCCEEecCCC
Q 039683 937 SLKVGICGEHGG-----------EPSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 937 g~~v~iCGe~a~-----------~p~~~~~l~~lG~~~~Sv~p~ 969 (983)
||||-+--+|-. +-..+.-.+--|.|.+..|.+
T Consensus 271 gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~E 314 (470)
T PRK09206 271 RKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGE 314 (470)
T ss_pred CCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEech
Confidence 999998666532 122344456678888777544
No 41
>PRK06354 pyruvate kinase; Provisional
Probab=97.49 E-value=0.00061 Score=82.67 Aligned_cols=117 Identities=22% Similarity=0.113 Sum_probs=89.2
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|-+.||+++++++++++.+.+ ..+. .+.+.+|||++.|+.++++|++.+|++.||..||...+
T Consensus 193 D~ia~SFVr~~~dv~~~r~~l~~-------~~~~--~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~------ 257 (590)
T PRK06354 193 DWIALSFVRNPSDVLEIRELIEE-------HNGK--HIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEI------ 257 (590)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHH-------hcCC--CceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhccc------
Confidence 47999999999999998876522 1121 47899999999999999999999999999999999533
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC-----------ChHHHHHHHHcCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG-----------EPSSVAFFAEAGL 961 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~-----------~p~~~~~l~~lG~ 961 (983)
|+ +.|-.+.++++++|++ +||||-+--+|-. +-..+...+--|.
T Consensus 258 ------------------g~-----e~v~~~qk~ii~~~~~--~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~ 312 (590)
T PRK06354 258 ------------------PA-----EEVPLLQKRLIKKANR--LGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGT 312 (590)
T ss_pred ------------------Cc-----HHHHHHHHHHHHHHHH--cCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCC
Confidence 11 4677889999999987 5999998555531 1223444566677
Q ss_pred CEEecCCC
Q 039683 962 DYVSCSPF 969 (983)
Q Consensus 962 ~~~Sv~p~ 969 (983)
|.+..|.+
T Consensus 313 DavMLS~E 320 (590)
T PRK06354 313 DAVMLSNE 320 (590)
T ss_pred cEEEeccc
Confidence 77777643
No 42
>PRK06247 pyruvate kinase; Provisional
Probab=97.48 E-value=0.00076 Score=79.61 Aligned_cols=113 Identities=21% Similarity=0.179 Sum_probs=89.3
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|-+.||+++++++.+++.+.+ .+.+.++||++.|+.++++|++.+|++.||..||...+
T Consensus 188 D~ia~SFVr~a~Di~~~r~~l~~-------------~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~------ 248 (476)
T PRK06247 188 DWVALSFVQRPEDVEEVRKIIGG-------------RVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEV------ 248 (476)
T ss_pred CEEEECCCCCHHHHHHHHHHhhh-------------cCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhcccc------
Confidence 47999999999999999987611 37899999999999999999999999999999999522
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC-----------ChHHHHHHHHcCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG-----------EPSSVAFFAEAGL 961 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~-----------~p~~~~~l~~lG~ 961 (983)
|+ +.|-.+.+++++.|++ +|||+-+.-+|-. +-..+.-.+--|.
T Consensus 249 ------------------g~-----~~v~~~qk~ii~~~~~--~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~ 303 (476)
T PRK06247 249 ------------------PL-----EQVPLIQKRIIRAARR--AGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGA 303 (476)
T ss_pred ------------------CH-----HHHHHHHHHHHHHHHH--hCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCC
Confidence 11 3677888999999987 5999999776632 1223444566688
Q ss_pred CEEecCCC
Q 039683 962 DYVSCSPF 969 (983)
Q Consensus 962 ~~~Sv~p~ 969 (983)
|.+..|.+
T Consensus 304 DavMLS~E 311 (476)
T PRK06247 304 DAVMLSAE 311 (476)
T ss_pred cEEEEcch
Confidence 88877743
No 43
>PLN02626 malate synthase
Probab=96.97 E-value=0.011 Score=70.26 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=95.4
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh----CCEEEEcchhhhhhhh
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE----AEFFSFGTNDLTQMTF 887 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~----~Df~sIGtNDLtq~~l 887 (983)
+.|++|++.+++|++.+.+.+..+.. ..|++. .+++++||||+.|++++++|+.+ +-++..|..|+.-.+.
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~----~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~i 288 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEK----MAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFV 288 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHH----HhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHH
Confidence 68999999999999999988765533 457776 58999999999999999999965 7899999999933322
Q ss_pred cCcCCCccccchhhhccCCCCCCCcc-cCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCC-----CChHH----HHH--
Q 039683 888 GYSRDDVGKFLPVYLSKGILQSDPFE-VLDQKGVGQLIKIATERGRAARPSLKVGICGEHG-----GEPSS----VAF-- 955 (983)
Q Consensus 888 a~dR~~~~~~~~~y~~~~i~~~~p~~-~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a-----~~p~~----~~~-- 955 (983)
..=|.....+.+ |..+ .++.+-...-.+..+..|++ .|+. .|=|-.+ .||+. ...
T Consensus 289 k~l~~~~~~vlp----------Dr~~vtM~~~f~rAY~~llV~ach~--rG~~-AIgGM~a~iP~kdd~~~n~~al~~vr 355 (551)
T PLN02626 289 KTFRAHPDRLLP----------DRVQVGMTQHFMKSYVDLLIKTCHK--RGVH-AMGGMAAQIPIKDDPAANEAALALVR 355 (551)
T ss_pred HHhccCCCCCCC----------CccccchhhHHHHHHHHHHHHHHHh--cCCc-ccccccccccCCCChhhhHHHHHHHH
Confidence 221222110010 1111 11223333334456667776 3654 3335333 13433 222
Q ss_pred -----HHHcCCC-EEecCCCchHHHHHHhh
Q 039683 956 -----FAEAGLD-YVSCSPFRVPIARLAAA 979 (983)
Q Consensus 956 -----l~~lG~~-~~Sv~p~~i~~~r~a~a 979 (983)
=..+|++ .....|..|+.++.+-.
T Consensus 356 ~dk~re~~~GfDG~wViHP~~V~~~~evF~ 385 (551)
T PLN02626 356 KDKLREVRAGHDGTWAAHPGLIPLAMEVFD 385 (551)
T ss_pred HHHHHHHhcCCCceeecChhHHHHHHHHHH
Confidence 2578998 66677888888776543
No 44
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=96.85 E-value=0.016 Score=66.50 Aligned_cols=134 Identities=25% Similarity=0.221 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHH
Q 039683 786 YPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVA 865 (983)
Q Consensus 786 ~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a 865 (983)
.|-+.+--.+.|.-|+. +|+ --|.++||+++++++.+++.+. +.| .++++.+-||++.|+.+.
T Consensus 171 lp~LtekD~~di~fa~~----~~v---D~IalSFVrsa~dV~~lr~~l~--------~~~--~~~~iiaKIE~~~~v~nl 233 (348)
T PF00224_consen 171 LPALTEKDKEDIKFAVE----NGV---DFIALSFVRSAEDVKELRKILG--------EKG--KDIKIIAKIETKEAVENL 233 (348)
T ss_dssp S-SS-HHHHHHHHHHHH----TT----SEEEETTE-SHHHHHHHHHHHT--------CTT--TTSEEEEEE-SHHHHHTH
T ss_pred cccCCHHHHHHHHHHHH----cCC---CEEEecCCCchHHHHHHHHHhh--------hcC--cccceeeccccHHHHhhH
Confidence 36666666666644432 232 4799999999999999887652 234 358999999999999999
Q ss_pred HHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCC
Q 039683 866 DEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGE 945 (983)
Q Consensus 866 ~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe 945 (983)
++|++.+|++.|.=.||.--+ |+. .|-.+=++++..|++ .||||.++.+
T Consensus 234 ~eI~~~sDgimiaRGDLg~e~------------------------~~e-----~v~~~Qk~ii~~~~~--~~kpvi~ATq 282 (348)
T PF00224_consen 234 DEILEASDGIMIARGDLGVEI------------------------PFE-----KVPIIQKRIIKKCNA--AGKPVIVATQ 282 (348)
T ss_dssp HHHHHHSSEEEEEHHHHHHHS------------------------TGG-----GHHHHHHHHHHHHHH--HT-EEEEESS
T ss_pred HHHhhhcCeEEEecCCcceee------------------------eHH-----HHHHHHHHHHHHHHH--hCCCeeehhH
Confidence 999999999999999998533 222 344455566677776 4999999998
Q ss_pred CC------CChHH-----HHHHHHcCCCEEecC
Q 039683 946 HG------GEPSS-----VAFFAEAGLDYVSCS 967 (983)
Q Consensus 946 ~a------~~p~~-----~~~l~~lG~~~~Sv~ 967 (983)
+- ..|.. +...+-.|.|.+..|
T Consensus 283 ~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs 315 (348)
T PF00224_consen 283 MLESMIKNPIPTRAEVSDVANAVLDGADAVMLS 315 (348)
T ss_dssp SSGGGGTSSS--HHHHHHHHHHHHHT-SEEEES
T ss_pred hHHHHHhCCCCchHHHhhHHHHHHcCCCEEEec
Confidence 83 23333 333466799999887
No 45
>PRK08187 pyruvate kinase; Validated
Probab=96.84 E-value=0.004 Score=74.08 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=82.2
Q ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCceEEEEEecHHHHHHHHHHHhhCC-----EEEEcchhhhhhh
Q 039683 814 EIMVPLVGTPQELGHQISLIRNVATKVFSEMGS--SLDYKVGTMIEIPRAALVADEIAKEAE-----FFSFGTNDLTQMT 886 (983)
Q Consensus 814 ~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~--~~~~~vg~MIEtP~a~~~a~~ia~~~D-----f~sIGtNDLtq~~ 886 (983)
.|++|||.++++++.+++.+.. .+. ...+.|.++||||.|+.++++|+.++| ++.||..||+--+
T Consensus 327 ~I~lSfV~saeDV~~l~~~L~~--------~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEi 398 (493)
T PRK08187 327 LVGYSFVQSPGDVEALQAALAA--------RRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEI 398 (493)
T ss_pred EEEECCCCCHHHHHHHHHHHHH--------hCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhc
Confidence 6999999999999998887632 121 114789999999999999999998877 9999999998533
Q ss_pred hcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCC---------CChHHHHHHH
Q 039683 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHG---------GEPSSVAFFA 957 (983)
Q Consensus 887 la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a---------~~p~~~~~l~ 957 (983)
++.+ - |.+ =++++.+|++ +|||+.+.-+|- ...+......
T Consensus 399 -g~e~------------------~-------p~~---Qk~II~~cra--agkpvI~ATQmLESM~~~p~PTRAEvtDvAn 447 (493)
T PRK08187 399 -GFER------------------L-------AEM---QEEILWLCEA--AHVPVIWATQVLEGLVKKGLPSRAEMTDAAM 447 (493)
T ss_pred -Cccc------------------C-------hHH---HHHHHHHHHH--hCCCeEEEchhhHhhccCCCCchHHHHHHHh
Confidence 1111 0 232 3445566776 589988765542 3334444445
Q ss_pred HcCCCEEecCC
Q 039683 958 EAGLDYVSCSP 968 (983)
Q Consensus 958 ~lG~~~~Sv~p 968 (983)
.-|.|.|..|.
T Consensus 448 adgaDavMLs~ 458 (493)
T PRK08187 448 AARAECVMLNK 458 (493)
T ss_pred hcCCCEEeecC
Confidence 57888887763
No 46
>PRK06739 pyruvate kinase; Validated
Probab=96.27 E-value=0.042 Score=62.93 Aligned_cols=117 Identities=19% Similarity=0.105 Sum_probs=89.7
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|-+.||+++++++.+++.+++ .|.. .+++.+-||++.|+.+.++|++++|++.|.=-||.--
T Consensus 180 D~ia~SFVr~~~Dv~~~r~~l~~--------~g~~-~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve------- 243 (352)
T PRK06739 180 DFIACSFVRKPSHIKEIRDFIQQ--------YKET-SPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVE------- 243 (352)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH--------cCCC-CCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccc-------
Confidence 48999999999999999887632 2322 4789999999999999999999999999997777731
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC-----------ChHHHHHHHHcCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG-----------EPSSVAFFAEAGL 961 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~-----------~p~~~~~l~~lG~ 961 (983)
=|++ .|-.+=++++..|++ .||||-++-+|-. .-..+...+-.|.
T Consensus 244 -----------------~~~e-----~vp~~Qk~Ii~~c~~--~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~ 299 (352)
T PRK06739 244 -----------------LPYQ-----FIPLLQKMMIQECNR--TNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGT 299 (352)
T ss_pred -----------------cCHH-----HHHHHHHHHHHHHHH--hCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCC
Confidence 2332 555666777888887 5999999877642 2234455678899
Q ss_pred CEEecCCC
Q 039683 962 DYVSCSPF 969 (983)
Q Consensus 962 ~~~Sv~p~ 969 (983)
|.+..|.+
T Consensus 300 D~vMLS~E 307 (352)
T PRK06739 300 NAVMLSAE 307 (352)
T ss_pred cEEEEccc
Confidence 99888744
No 47
>PTZ00066 pyruvate kinase; Provisional
Probab=95.87 E-value=0.064 Score=64.17 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=84.2
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 039683 777 FRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI 856 (983)
Q Consensus 777 ~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI 856 (983)
++|+.+.+ |-+.+-=.+.|++-+.+ +|+ --|-+.||+++++++.+++.+. +.|. ++++.+-|
T Consensus 197 lpg~~~~l--p~ltekD~~dI~~f~~~---~~v---D~IalSFVr~a~DI~~~r~~l~--------~~g~--~~~IiAKI 258 (513)
T PTZ00066 197 LPGVKVEL--PVIGEKDKNDILNFAIP---MGC---DFIALSFVQSADDVRLCRQLLG--------ERGR--HIKIIPKI 258 (513)
T ss_pred cCCCccCC--CCCCHHHHHHHHHHHHh---cCC---CEEEECCCCCHHHHHHHHHHHH--------hCCC--CceEEEEE
Confidence 44554443 44444445665333332 333 3799999999999999998763 2333 47999999
Q ss_pred ecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCC
Q 039683 857 EIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936 (983)
Q Consensus 857 EtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~ 936 (983)
|+|.|+.+.++|++.+|++.|.=-||.-- -|++ .|-.+=|++++.|++ .
T Consensus 259 E~~~av~NldeIl~~sDGIMVARGDLGvE------------------------ip~e-----~vp~~QK~II~~c~~--~ 307 (513)
T PTZ00066 259 ENIEGLINFDEILAESDGIMVARGDLGME------------------------IPPE-----KVFLAQKMMISKCNV--A 307 (513)
T ss_pred CCHHHHHHHHHHHHhcCEEEEEccccccc------------------------cChH-----HcchHHHHHHHHHHH--h
Confidence 99999999999999999999987777631 1322 344455666778876 5
Q ss_pred CCeEEEcCCC
Q 039683 937 SLKVGICGEH 946 (983)
Q Consensus 937 g~~v~iCGe~ 946 (983)
||||-+.-+|
T Consensus 308 gkPVIvATQm 317 (513)
T PTZ00066 308 GKPVITATQM 317 (513)
T ss_pred CCCEEEechh
Confidence 8999875554
No 48
>PLN02762 pyruvate kinase complex alpha subunit
Probab=95.39 E-value=0.16 Score=60.98 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=73.1
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|-+.||+++++++.+++.+. +.|....+++.+-||+|.|+.+.++|++++|++.|-=-||.--
T Consensus 218 D~ia~SFVr~a~Dv~~~r~~l~--------~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvE------- 282 (509)
T PLN02762 218 DFIAVSFVKSAEVIKHLKSYIA--------ARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQ------- 282 (509)
T ss_pred CEEEECCCCCHHHHHHHHHHHH--------HcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccc-------
Confidence 4799999999999999998763 2343225799999999999999999999999999987777631
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~ 946 (983)
-|+ +.|-.+=|+++..|++ .||||-+.-+|
T Consensus 283 -----------------ip~-----e~vp~~QK~II~~c~~--~gKPVIvATQm 312 (509)
T PLN02762 283 -----------------IPL-----EQVPSVQEKIVRLCRQ--LNKPVIVASQL 312 (509)
T ss_pred -----------------cCH-----HHhHHHHHHHHHHHHH--hCCCEEEECch
Confidence 232 2455555677778876 59999874444
No 49
>PLN02765 pyruvate kinase
Probab=94.72 E-value=0.29 Score=58.88 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 039683 777 FRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI 856 (983)
Q Consensus 777 ~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI 856 (983)
++|+++.+ |-+.+--.+.|..-+.+ +|+ -.|-+.||+++++++.+++.+.+ .|.+ .+++.+-|
T Consensus 194 lpg~~~~l--p~ltekD~~di~~f~~~---~~v---D~ia~SFVr~a~DI~~~r~~l~~--------~g~~-~~~IiaKI 256 (526)
T PLN02765 194 VSQVRIDL--PTLSEKDKEVISTWGVP---NKI---DFLSLSYTRHAEDVREAREFLSS--------LGLS-QTQIFAKI 256 (526)
T ss_pred CCCCcCCC--CCCcHhHHHHHHHHHHH---cCC---CEEEECCCCCHHHHHHHHHHHHh--------cCCC-CCcEEEEE
Confidence 34544333 44554445665322222 222 37999999999999999887632 3422 47899999
Q ss_pred ecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCC
Q 039683 857 EIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARP 936 (983)
Q Consensus 857 EtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~ 936 (983)
|+|.|+.+.++|++.+|++.|.=-||.-- -|++ .|-.+=|+++..|++ .
T Consensus 257 E~~~av~nl~eIi~~sDgIMVARGDLGvE------------------------ip~e-----~vp~~QK~iI~~c~~--~ 305 (526)
T PLN02765 257 ENVEGLTHFDEILQEADGIILSRGNLGID------------------------LPPE-----KVFLFQKAALYKCNM--A 305 (526)
T ss_pred CCHHHHHHHHHHHHhcCEEEEecCccccc------------------------cCHH-----HhHHHHHHHHHHHHH--h
Confidence 99999999999999999999987777631 1222 333444566677776 5
Q ss_pred CCeEEEcCCCCC-----------ChHHHHHHHHcCCCEEecC
Q 039683 937 SLKVGICGEHGG-----------EPSSVAFFAEAGLDYVSCS 967 (983)
Q Consensus 937 g~~v~iCGe~a~-----------~p~~~~~l~~lG~~~~Sv~ 967 (983)
||||-+ -+|-. +-..+.-.+--|.|.+..|
T Consensus 306 gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLS 346 (526)
T PLN02765 306 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLG 346 (526)
T ss_pred CCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEec
Confidence 898864 55532 1122233344577777666
No 50
>PLN02461 Probable pyruvate kinase
Probab=94.36 E-value=0.33 Score=58.28 Aligned_cols=135 Identities=21% Similarity=0.161 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHH
Q 039683 787 PELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVAD 866 (983)
Q Consensus 787 p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~ 866 (983)
|.+.+-=.+.|.+-+.+ +| --.|-+.||+++++++.+++.+. +.|. .+++.+=||+|.|+.+.+
T Consensus 189 p~ltekD~~di~~f~~~---~~---vD~ia~SFVr~a~DV~~~r~~l~--------~~~~--~~~IiAKIE~~~av~nl~ 252 (511)
T PLN02461 189 PTLTEKDKEDILQWGVP---NK---IDFIALSFVRKGSDLVEVRKVLG--------EHAK--SILLISKVENQEGLDNFD 252 (511)
T ss_pred CCCCHHHHHHHHHHHhh---cC---CCEEEECCCCCHHHHHHHHHHHH--------hCCC--CCCEEEEECCHHHHHHHH
Confidence 54555555665322222 22 24799999999999999988763 2232 478999999999999999
Q ss_pred HHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCC
Q 039683 867 EIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946 (983)
Q Consensus 867 ~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~ 946 (983)
+|++++|++.|.=-||.-- -|+. .|-.+=+++++.|++ .||||-+..+|
T Consensus 253 eIi~~sDgIMVARGDLGvE------------------------ip~e-----~vp~~Qk~II~~c~~--~gkPVIvATQm 301 (511)
T PLN02461 253 DILAESDAFMVARGDLGME------------------------IPIE-----KIFLAQKMMIYKCNL--AGKPVVTATQM 301 (511)
T ss_pred HHHHhcCEEEEeccccccc------------------------cCHH-----HhHHHHHHHHHHHHH--cCCCeEEeehh
Confidence 9999999999987777631 2332 444555667778887 59999986665
Q ss_pred CC-----------ChHHHHHHHHcCCCEEecCC
Q 039683 947 GG-----------EPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 947 a~-----------~p~~~~~l~~lG~~~~Sv~p 968 (983)
-. +-..+.-.+--|.|.+..|.
T Consensus 302 LeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ 334 (511)
T PLN02461 302 LESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 334 (511)
T ss_pred HHHHhhCCCCchHHHHHHHHHHHhCCcEEEEec
Confidence 32 11233334556888777763
No 51
>PRK14725 pyruvate kinase; Provisional
Probab=93.49 E-value=0.39 Score=58.36 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=86.2
Q ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhC-----CEEEEcchhhhhhhhc
Q 039683 814 EIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEA-----EFFSFGTNDLTQMTFG 888 (983)
Q Consensus 814 ~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~-----Df~sIGtNDLtq~~la 888 (983)
-|-+.||.++++++.+++.+.+ .|.. ++.|.+-||+|.|+.++++|+.++ |++.|.=-||.--
T Consensus 447 ~ValSFVrs~~DV~~lr~~L~~--------~g~~-~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvE--- 514 (608)
T PRK14725 447 IVALSFVRSPEDVRLLLDALEK--------LGAD-DLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVE--- 514 (608)
T ss_pred EEEECCCCCHHHHHHHHHHHHH--------cCCC-CCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccc---
Confidence 6999999999999999987632 2322 478999999999999999999997 9999998888731
Q ss_pred CcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCC---------CChHHHHHHHHc
Q 039683 889 YSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHG---------GEPSSVAFFAEA 959 (983)
Q Consensus 889 ~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a---------~~p~~~~~l~~l 959 (983)
=||. .|-.+=++++..|++ +||||.+.-+|- ...+......+.
T Consensus 515 ---------------------i~~e-----~lp~iQk~Ii~~c~~--~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv 566 (608)
T PRK14725 515 ---------------------VGFE-----RLAEVQEEILWLCEA--AHVPVIWATQVLESLAKKGLPSRAEITDAAMAL 566 (608)
T ss_pred ---------------------cCHH-----HHHHHHHHHHHHHHH--cCCCEEEEcchHhhhccCCCCCchhHHHHHhhh
Confidence 2332 455566677778877 599999876653 233444444555
Q ss_pred CCCEEecCCC
Q 039683 960 GLDYVSCSPF 969 (983)
Q Consensus 960 G~~~~Sv~p~ 969 (983)
|.+.|..|.-
T Consensus 567 gaD~VMLS~G 576 (608)
T PRK14725 567 RAECVMLNKG 576 (608)
T ss_pred cCCEEeecCC
Confidence 8888877633
No 52
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=93.23 E-value=0.015 Score=56.66 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHhccccCcccccccCcEEEEEeecccccHHHHHHHHHHHHHhhhcchHHHhhccC
Q 039683 418 NCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKAAVKIAVDMVNEGLVDTRAAVKMVE 479 (983)
Q Consensus 418 ~a~ilE~~~~~~qDiEf~~~~~~l~ILQ~Rp~~~~a~~Av~~a~~~~~~~~~~~~~~~~~~~ 479 (983)
.+.+|+.|..+++|.+|....... ++... ++++||..+++.+.+.|.+++|+|++.|
T Consensus 66 ~a~If~ah~~~L~D~~l~~~v~~~----I~~~~-~Ae~Av~~~~~~~~~~f~~~~d~ylreR 122 (123)
T PF05524_consen 66 EAAIFEAHLMMLEDPELIDEVEEL----IREGK-NAEYAVQEVIEEYIEQFEAMDDPYLRER 122 (123)
T ss_dssp CTHHHHHHHHHHT-HHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHH----HhccC-CHHHHHHHHHHHHHHHHHhCCCHHHHhh
Confidence 347899999999999998764332 36666 9999999999999999999999998875
No 53
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=87.74 E-value=2 Score=51.87 Aligned_cols=150 Identities=21% Similarity=0.168 Sum_probs=89.9
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh----CCEEEEcchhhhhhh
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE----AEFFSFGTNDLTQMT 886 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~----~Df~sIGtNDLtq~~ 886 (983)
-+-+.+|.+.+.+|++-..+++..+.. .-|++. .+++++||||-.|+++.++|+-+ +-|+--|-=|-+-..
T Consensus 204 gpYfylPKme~~~EA~lwn~vF~~~E~----~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~ 279 (526)
T PF01274_consen 204 GPYFYLPKMESHEEARLWNDVFSFAED----LLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSE 279 (526)
T ss_dssp SEEEEE-S-SSHHHHHHHHHHHHHHHH----HHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHHHH----HhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHH
Confidence 368999999999999999888766543 347766 58999999999999999999987 667888877888776
Q ss_pred hcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC-----Ch----HHHHHH-
Q 039683 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG-----EP----SSVAFF- 956 (983)
Q Consensus 887 la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~-----~p----~~~~~l- 956 (983)
.-.-|.....++|.= ..+ .++.|-+..-.+..++.|+++ |. --+||-.+- || ......
T Consensus 280 Ik~~~~~~~~vlPdR--~~v-------~m~~pfm~aY~~llv~tch~R--ga-~a~gGmaa~ip~~~d~~~~~~a~~~v~ 347 (526)
T PF01274_consen 280 IKTFRNRPDFVLPDR--KQV-------TMTQPFMRAYEDLLVRTCHRR--GA-HAMGGMAAFIPIGKDPWANPDAMAKVR 347 (526)
T ss_dssp HHHTCCGCCBB---G--GGG-------GCGSHHHHHHHHHHHHHHHHT--T--HHHTTCTTTSEEEEEEHHBTTCHHHHH
T ss_pred HHHhhhCCCcccccc--ccc-------cccCHHHHHHHHHHHHHHhhc--CC-ccccCCccccCCCCChhhhHHHHHHHH
Confidence 665555442222210 011 222344445555566777764 32 125664443 22 222222
Q ss_pred ------HHcCCCEEec-CCCchHHHHHH
Q 039683 957 ------AEAGLDYVSC-SPFRVPIARLA 977 (983)
Q Consensus 957 ------~~lG~~~~Sv-~p~~i~~~r~a 977 (983)
...|+|-.-| +|..+++++..
T Consensus 348 ~dK~rE~~~G~dg~WVahP~lv~~~~~~ 375 (526)
T PF01274_consen 348 ADKEREAKAGFDGAWVAHPGLVPLAREH 375 (526)
T ss_dssp HHTHHHHHTT-SEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccChhHHHHHHHH
Confidence 4678885555 45555555543
No 54
>cd00728 malate_synt_G Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=84.13 E-value=2.3 Score=52.01 Aligned_cols=78 Identities=23% Similarity=0.143 Sum_probs=57.2
Q ss_pred ccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhhCCEEEEcch----hhhh
Q 039683 810 KVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKEAEFFSFGTN----DLTQ 884 (983)
Q Consensus 810 ~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtN----DLtq 884 (983)
++.+.|.+|.+.+++|++.+.+++..+.. .-|++. -+++|+|+|+-.+..++++|..++--=++|-| |-|-
T Consensus 380 ~GsiYfykPKmegp~Ea~fwndlF~~~Ed----~LGLp~gTIKa~VmiEe~~asfnl~Eii~elrdrv~fiNtGrwDytf 455 (712)
T cd00728 380 TGSIYIVKPKMHGPEEVAFANELFSRVED----LLGLPQNTIKMGIMDEERRTSVNLKECIRAARDRVVFINTGFLDRTG 455 (712)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHH----HhCCCCCceEEEEEeeccHhhhhHHHHHHHHHhheeecccCchhhhh
Confidence 34579999999999999998888765533 347776 58999999999999999999988333334445 5544
Q ss_pred hhhcCcC
Q 039683 885 MTFGYSR 891 (983)
Q Consensus 885 ~~la~dR 891 (983)
...-..|
T Consensus 456 s~I~t~~ 462 (712)
T cd00728 456 DEIHTSM 462 (712)
T ss_pred hHHHHHh
Confidence 4333333
No 55
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=84.03 E-value=2.5 Score=51.79 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=53.0
Q ss_pred ccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhhCCEEEEcch
Q 039683 810 KVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKEAEFFSFGTN 880 (983)
Q Consensus 810 ~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtN 880 (983)
++.+.|.+|.+.+++|++.+.+++..+.. .-|++. -+++|+|+|+-.+..++++|..++--=++|-|
T Consensus 385 ~GsiY~ykPKmhgp~EaafwndlF~~~Ed----~LGLp~gTIK~gVmdEerras~nL~EcI~elrdrv~fiN 452 (721)
T TIGR01345 385 KGSVYIVKPKMHGPEEVAFANKLFTRIED----MLGLARHTLKMGVMDEERRTSLNLRACIAQVRNRVAFIN 452 (721)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHH----HhCCCCCceEEEEEEeccHhHhhHHHHHHHHHhheeecc
Confidence 35679999999999999998888765533 347776 58999999999999999999887332245555
No 56
>PRK02999 malate synthase G; Provisional
Probab=81.27 E-value=6.8 Score=48.15 Aligned_cols=66 Identities=23% Similarity=0.168 Sum_probs=52.1
Q ss_pred cCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhhCCEEEEcch
Q 039683 811 VFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKEAEFFSFGTN 880 (983)
Q Consensus 811 ~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtN 880 (983)
+.+.|.+|.+.+++|++.+.+++..+.. .-|++. -+++|+|+|+-.+..++++|..++--=++|-|
T Consensus 389 GsiY~ykPKmegp~Ea~fwndlF~~~E~----~LGLp~gTIK~~VmiEe~ras~nL~eii~elr~rv~fiN 455 (726)
T PRK02999 389 GSVYIVKPKMHGPEEVAFANELFGRVED----LLGLPRNTLKVGIMDEERRTSVNLKACIRAAKDRVVFIN 455 (726)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHHHH----HhCCCCCceEEEEEeeccHhHhhHHHHHHHHHhheeecc
Confidence 4579999999999999998888765533 347776 58999999999999999999988333334455
No 57
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=79.37 E-value=4.3 Score=48.55 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=47.3
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecHHHHHHHHHHHhh
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSL-DYKVGTMIEIPRAALVADEIAKE 871 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~-~~~vg~MIEtP~a~~~a~~ia~~ 871 (983)
+.|.+|...+++|+..+-+++..+.. .-|++. .+++++|+|+-.+.++.++|...
T Consensus 220 ~YfylPKm~~p~Ea~f~ndvf~rvEd----~LGLprgTiK~~vl~Ee~~a~~~m~eii~~ 275 (545)
T COG2225 220 PYFYLPKMEGPEEAAFWNDVFSRVED----TLGLPRGTIKATLLIEERRATLNLDEILYA 275 (545)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHH----HcCCCCCceeEeeehhhhhhhhhHHHHHHH
Confidence 78999999999999988887766533 357776 58999999999999999999887
No 58
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=76.65 E-value=14 Score=44.19 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=69.5
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCC
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRD 892 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~ 892 (983)
-.|-+-||.+++++..+++.+.+ ..|. ++++.+=||.|.|+.+.|+|++.+|++.|==-||---
T Consensus 190 D~vA~SFVr~~~Dv~~~R~~l~~-------~~~~--~~~iiaKIE~~eav~NldeIi~~SDGIMVARGDLGVE------- 253 (477)
T COG0469 190 DFVALSFVRNAEDVEEVREILAE-------TGGR--DVKIIAKIENQEAVDNLDEIIEASDGIMVARGDLGVE------- 253 (477)
T ss_pred CEEEEecCCCHHHHHHHHHHHHH-------hCCC--CceEEEeecCHHHHhHHHHHHHhcCceEEEecccccc-------
Confidence 37889999999999998876532 2232 3789999999999999999999999999876666521
Q ss_pred CccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCC
Q 039683 893 DVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEH 946 (983)
Q Consensus 893 ~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~ 946 (983)
=|+ +.|--+=|++++.|++ .||||-+.=+|
T Consensus 254 -----------------ip~-----e~Vp~~QK~iI~~~~~--~gkpVItATQM 283 (477)
T COG0469 254 -----------------IPL-----EEVPIIQKRIIRKARR--AGKPVITATQM 283 (477)
T ss_pred -----------------cCH-----HHhhHHHHHHHHHHHH--cCCceEEeecc
Confidence 122 2444444566678876 59999884444
No 59
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=64.86 E-value=40 Score=40.60 Aligned_cols=152 Identities=17% Similarity=0.168 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHH---HHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHH--------HHHHHcCCCC---CceE
Q 039683 787 PELTEMQVRAIFQAA---VSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVAT--------KVFSEMGSSL---DYKV 852 (983)
Q Consensus 787 p~i~~~QlrAi~rAa---~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~--------~~~~~~g~~~---~~~v 852 (983)
..++-.-+..|.+.. ... ++..+--.|++||.++++|+..+.+..+.... -..++.+..+ .+.|
T Consensus 95 rk~l~~t~~~i~~~~d~a~~~--~~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~v 172 (491)
T PF14010_consen 95 RKLLAETLESIPNSYDSARLF--EDVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEV 172 (491)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH---SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEE
T ss_pred HHHHHHHHHHhhhHHHHHHHh--ccCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceE
Confidence 344555556665543 222 24445589999999999999999888876544 2223444443 6899
Q ss_pred EEEEecHHHHHHHHHHHhh----C--C----EEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHH
Q 039683 853 GTMIEIPRAALVADEIAKE----A--E----FFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQ 922 (983)
Q Consensus 853 g~MIEtP~a~~~a~~ia~~----~--D----f~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~ 922 (983)
...||.-.+.+++++|+.. . + -+++|=.|=+... | ++ +. + =++.-
T Consensus 173 IPL~Ed~~~~l~~~~Il~~y~~~~g~~~~y~RVFLarSDpAmny--------G-----~i-----aa----~---L~~k~ 227 (491)
T PF14010_consen 173 IPLFEDVDSLLNADEILEEYLKDKGRDPEYQRVFLARSDPAMNY--------G-----HI-----AA----V---LANKY 227 (491)
T ss_dssp EEEE-SHHHHHTHHHHHHHHHHHTT---SEEEEEEESHHHHHHH--------------HH-----HH----H---HHHHH
T ss_pred eeccccHHHHhcHHHHHHHHHHHhcCCchheeeeeccCchhhcc--------c-----hH-----HH----H---HHHHH
Confidence 9999999999999999986 2 2 1677777766422 1 11 00 0 14445
Q ss_pred HHHHHHHHhhhcCCCCeEEE---cCCCC--C--ChHHHHHHHH--cCCCEEecC
Q 039683 923 LIKIATERGRAARPSLKVGI---CGEHG--G--EPSSVAFFAE--AGLDYVSCS 967 (983)
Q Consensus 923 lI~~~~~~a~~~~~g~~v~i---CGe~a--~--~p~~~~~l~~--lG~~~~Sv~ 967 (983)
++.+..+-.+. .|+++.- ||-.. | +|..+..++. -|+..+.+-
T Consensus 228 AL~~l~~~~~e--~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~EY~gv~T~TIQ 279 (491)
T PF14010_consen 228 ALSKLYELEEE--LGIPIYPIIGVGSPPFRGGLSPPNVERVLEEYPGVYTFTIQ 279 (491)
T ss_dssp HHHHHHHHHHH--HT-EEEEEEE-BSSGGGT---TTGHHHHHHHTTT-SEEEE-
T ss_pred HHHHHHHHHHh--cCCceeeeeccCCCCcCCCCChHhHHHHHHhcCCeeEEEee
Confidence 55555555555 3776543 55443 1 6666665543 467666653
No 60
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=62.94 E-value=3.6 Score=22.63 Aligned_cols=9 Identities=56% Similarity=1.243 Sum_probs=8.0
Q ss_pred CCCCCcccc
Q 039683 773 PMLGFRGCR 781 (983)
Q Consensus 773 P~LG~RGiR 781 (983)
|.|||.|+|
T Consensus 2 psmgf~g~r 10 (10)
T PF08262_consen 2 PSMGFHGMR 10 (10)
T ss_pred CcccccccC
Confidence 889999987
No 61
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=60.06 E-value=28 Score=41.89 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCccccccCCChHHHHHHHHHHHHHHHHccccCCccCc-EEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 039683 776 GFRGCRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFP-EIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGT 854 (983)
Q Consensus 776 G~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l-~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~ 854 (983)
-+||+--. +|.+.+- -.-+++= |+..++ =|..++|+..++++++++.+. +.| .++++..
T Consensus 181 nlpg~~vd--lp~ltek-d~~dl~f-------Gven~vd~i~~SfIR~a~dv~~iR~~Lg--------~~g--~~ikiis 240 (501)
T KOG2323|consen 181 NLPGTHVD--LPALTEK-DEKDLKF-------GVENKVDMIFASFIRKASDVREVRKVLG--------ESG--KNIKLIS 240 (501)
T ss_pred cCCCcccc--CCccChh-hHHHHhc-------CCCCCCCEEEeeeeeehHHHHHHHHHhC--------ccC--CcceEEE
Confidence 35666433 4666665 3344433 222333 477899999999999887652 122 3689999
Q ss_pred EEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhc
Q 039683 855 MIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAA 934 (983)
Q Consensus 855 MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~ 934 (983)
+||.-.++.+.|+|..+.|++.+==-||-. + =|- +.|.-+-|.++.+|++
T Consensus 241 KIEn~~g~~nfDeIl~~sDg~MvarGdlGi--------e----------------ip~-----e~vflaQK~~I~kcn~- 290 (501)
T KOG2323|consen 241 KIENQEGVSNFDEILIESDGIMVARGDLGI--------E----------------IPA-----EKVFLAQKMMIYKCNS- 290 (501)
T ss_pred EechhhhhccHHHHHHhcCceEEEeCCCCc--------c----------------cCH-----HHHHHHHHHHHHHhcc-
Confidence 999999999999999999999887666651 1 121 3455555667888876
Q ss_pred CCCCeEEEcCCC-----------CCChHHHHHHHHcCCCEEecCCC
Q 039683 935 RPSLKVGICGEH-----------GGEPSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 935 ~~g~~v~iCGe~-----------a~~p~~~~~l~~lG~~~~Sv~p~ 969 (983)
.||||-.-=+| -+.+..+.--+=.|.|.+..+-+
T Consensus 291 -~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgE 335 (501)
T KOG2323|consen 291 -AGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGE 335 (501)
T ss_pred -cCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccc
Confidence 69998742111 12335455555567777666544
No 62
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.67 E-value=2.4e+02 Score=29.32 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=57.2
Q ss_pred CceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHH
Q 039683 849 DYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIAT 928 (983)
Q Consensus 849 ~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~ 928 (983)
++.+|.++........+.+++..+|++.+|+-+- |.+. ..+. +...+.++++.
T Consensus 105 ~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~-----g~tg------------------~~~~----~~~~~~i~~~~ 157 (211)
T cd00429 105 GMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNP-----GFGG------------------QKFI----PEVLEKIRKLR 157 (211)
T ss_pred CCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECC-----CCCC------------------cccC----HHHHHHHHHHH
Confidence 4678888853223445666777799999987432 1111 1111 23334455444
Q ss_pred HHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCch
Q 039683 929 ERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRV 971 (983)
Q Consensus 929 ~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~i 971 (983)
+...++++++|+.+-| +=+++.+..+.+.|.+.+.+....+
T Consensus 158 ~~~~~~~~~~pi~v~G--GI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 158 ELIPENNLNLLIEVDG--GINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHHHhcCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEECHHHh
Confidence 4433223457888855 2278999999999999998876543
No 63
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=44.55 E-value=2.4e+02 Score=29.45 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=56.4
Q ss_pred ceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHH
Q 039683 850 YKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATE 929 (983)
Q Consensus 850 ~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~ 929 (983)
+.++++++.-.....+.+++..+|++.+++-+-+ . . .+.+. +...+.++++.+
T Consensus 105 ~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g-----~----t--------------g~~~~----~~~~~~i~~i~~ 157 (210)
T TIGR01163 105 AKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG-----F----G--------------GQKFI----PDTLEKIREVRK 157 (210)
T ss_pred CcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC-----C----C--------------ccccc----HHHHHHHHHHHH
Confidence 4567776643335556777777999888875432 1 1 11111 233455555544
Q ss_pred HhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCc
Q 039683 930 RGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFR 970 (983)
Q Consensus 930 ~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~ 970 (983)
...+.++++++.+=|-. +++.++.+++.|.+.+.+....
T Consensus 158 ~~~~~~~~~~i~v~GGI--~~env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 158 MIDENGLSILIEVDGGV--NDDNARELAEAGADILVAGSAI 196 (210)
T ss_pred HHHhcCCCceEEEECCc--CHHHHHHHHHcCCCEEEEChHH
Confidence 44332345688775533 6899999999999999887543
No 64
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=42.76 E-value=6.7 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.6
Q ss_pred hceEEEccCCccchHHHhhcccCceEEe
Q 039683 552 AAGILTARGGMTSHAAVVARGWGKCCVS 579 (983)
Q Consensus 552 a~GiVt~~Gg~tSHaAIvAR~lgIP~Vv 579 (983)
-.||+-+.||. +|.|+.+|++|||+|+
T Consensus 695 ~~~icG~~~~~-p~~a~~~~e~Gi~~Vs 721 (740)
T COG0574 695 LVGICGQAPSD-PHGAIFLVELGIDSVS 721 (740)
T ss_pred EEEEeccCCCC-cHHHHHHHHcCCCeEe
Confidence 36888888888 9999999999999999
No 65
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=40.92 E-value=1.2e+02 Score=33.82 Aligned_cols=49 Identities=12% Similarity=-0.026 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCch
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRV 971 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~i 971 (983)
...+.++.+.+... .++|+..+|-. .+++.+..++..|.+.+.+....+
T Consensus 228 ~~~~~v~~i~~~~~---~~ipiia~GGI-~~~~da~~~l~~GAd~V~vg~a~~ 276 (289)
T cd02810 228 LALRWVARLAARLQ---LDIPIIGVGGI-DSGEDVLEMLMAGASAVQVATALM 276 (289)
T ss_pred HHHHHHHHHHHhcC---CCCCEEEECCC-CCHHHHHHHHHcCccHheEcHHHH
Confidence 34566665544432 15788888854 478888888899999998875543
No 66
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=38.05 E-value=4.3e+02 Score=28.53 Aligned_cols=133 Identities=15% Similarity=0.241 Sum_probs=75.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE--e
Q 039683 780 CRLGISYPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMI--E 857 (983)
Q Consensus 780 iR~~l~~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MI--E 857 (983)
+-+...+|+-| ++.+.+| | ..++.-.+++...+.++.+.++ +.| .+.|+.+ .
T Consensus 63 vHLMv~~p~~~---i~~~~~~-------g----ad~i~~H~Ea~~~~~~~l~~ik--------~~g----~k~GlalnP~ 116 (220)
T PRK08883 63 VHLMVKPVDRI---IPDFAKA-------G----ASMITFHVEASEHVDRTLQLIK--------EHG----CQAGVVLNPA 116 (220)
T ss_pred EEeccCCHHHH---HHHHHHh-------C----CCEEEEcccCcccHHHHHHHHH--------HcC----CcEEEEeCCC
Confidence 35667788887 4455544 1 2455555555444544443332 234 4455555 4
Q ss_pred cHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCC
Q 039683 858 IPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPS 937 (983)
Q Consensus 858 tP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g 937 (983)
||- ...+.++..+|.+.+=| + |++ + .++.|. |...+-|+++.+...+...+
T Consensus 117 Tp~--~~i~~~l~~~D~vlvMt---------V---~PG-----f------gGq~fi----~~~lekI~~l~~~~~~~~~~ 167 (220)
T PRK08883 117 TPL--HHLEYIMDKVDLILLMS---------V---NPG-----F------GGQSFI----PHTLDKLRAVRKMIDESGRD 167 (220)
T ss_pred CCH--HHHHHHHHhCCeEEEEE---------e---cCC-----C------CCceec----HhHHHHHHHHHHHHHhcCCC
Confidence 554 45568888899876521 1 232 1 134444 34555566555444332234
Q ss_pred CeEEEcCCCCCChHHHHHHHHcCCCEEecCCC
Q 039683 938 LKVGICGEHGGEPSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 938 ~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~ 969 (983)
+++.+=| +=+++.++.+.+.|.+.+.+.+.
T Consensus 168 ~~I~vdG--GI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 168 IRLEIDG--GVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred eeEEEEC--CCCHHHHHHHHHcCCCEEEEeHH
Confidence 6666633 23799999999999999988754
No 67
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.23 E-value=1.6e+02 Score=32.92 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=41.2
Q ss_pred ceEEEecCCC--h----HhHHHHHHcCCCccccchhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHH
Q 039683 643 RLKVMANADT--P----DDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGI 716 (983)
Q Consensus 643 ~i~v~aNi~~--p----~d~~~a~~~ga~GIGL~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i 716 (983)
++.|++.++. . +-++.+.+.||+||=+.-- | +..+++++ +++.|+.|
T Consensus 70 ~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P-~---------------y~~~~~~~-----------i~~~~~~v 122 (288)
T cd00954 70 KVTLIAHVGSLNLKESQELAKHAEELGYDAISAITP-F---------------YYKFSFEE-----------IKDYYREI 122 (288)
T ss_pred CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-C---------------CCCCCHHH-----------HHHHHHHH
Confidence 4777887764 3 3345678999999853221 1 11235544 78889999
Q ss_pred HHHcCCCcEEEEecCCC
Q 039683 717 FRAMDGLPVTIRLLDPP 733 (983)
Q Consensus 717 ~~a~~~~pVtiR~lD~~ 733 (983)
+++.++.||++= ++|
T Consensus 123 ~~a~~~lpi~iY--n~P 137 (288)
T cd00954 123 IAAAASLPMIIY--HIP 137 (288)
T ss_pred HHhcCCCCEEEE--eCc
Confidence 998778999984 554
No 68
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.77 E-value=1.5e+02 Score=33.29 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 918 KGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 918 ~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
+.+.++++.. +...+...+-..|-. +|+.+..+...|+|.+|++.
T Consensus 214 e~l~~~v~~~----~~~~~~~~ieAsGgI--t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 214 EEIKEVVAYR----NANYPHVLLEASGNI--TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHHHHHHh----hccCCCeEEEEECCC--CHHHHHHHHHcCCCEEEeCh
Confidence 4555665532 211235567778766 99999999999999999985
No 69
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=35.68 E-value=3.4e+02 Score=31.54 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEE--cCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 919 GVGQLIKIATERGRAARPSLKVGI--CGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~i--CGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
.+.+.|+.+.+.. ++||.+ +| .+-.++.+..|.+.|+|.+-++.
T Consensus 173 ~~le~i~~i~~~~-----~vPVivK~~g-~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 173 GWLDNIAEIVSAL-----PVPVIVKEVG-FGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHHHHHhh-----CCCEEEEeCC-CCCcHHHHHHHHHcCCCEEEECC
Confidence 4556666554442 578988 66 35678999999999999999865
No 70
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=35.45 E-value=22 Score=35.03 Aligned_cols=48 Identities=27% Similarity=0.386 Sum_probs=34.3
Q ss_pred ceEEEccC-CccchHHHhhcccCceEEeccCccccccCCceEEeccEEeeCCCEEEEECCccEEE
Q 039683 553 AGILTARG-GMTSHAAVVARGWGKCCVSGCSDIRVNDNEKSIVVGDMVISEGDWLSLNGSTGEVI 616 (983)
Q Consensus 553 ~GiVt~~G-g~tSHaAIvAR~lgIP~VvGv~~~~~~~~~~~~~~~~~~l~~G~~VtlDg~~G~V~ 616 (983)
+|||.++- -...-.||+| +||.+.+..+.. +.++.|++|.||+ +|.|-
T Consensus 80 ~aIv~~e~EpIla~Gai~a---~iPlv~~~~e~~------------~~l~~g~~v~v~~-~G~ve 128 (131)
T COG1786 80 AAIVNEEAEPILAVGAILA---GIPLVDGVDEFF------------EELKTGDRVRVNP-EGEVE 128 (131)
T ss_pred hhhhhcCCcceeeehhhhc---CCceEeccHHHH------------HHhccCCEEEEcC-CceEE
Confidence 45554443 3344456777 999999987443 6789999999999 78764
No 71
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=34.28 E-value=35 Score=34.95 Aligned_cols=59 Identities=24% Similarity=0.225 Sum_probs=34.6
Q ss_pred cCCccchHHHhhcccCceEEeccCccccccCC------ceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 559 RGGMTSHAAVVARGWGKCCVSGCSDIRVNDNE------KSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 559 ~Gg~tSHaAIvAR~lgIP~VvGv~~~~~~~~~------~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
.||.--||+..-+.+||.||+.-+-+.+.... -.+....+.+.+||.|+||-.+|.|..
T Consensus 59 ~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~~~i~~gd~i~vdl~~~~v~~ 123 (154)
T TIGR02087 59 CGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKTEGIKDGDEVTVDLETGEIRV 123 (154)
T ss_pred CCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCHHHCCCCCEEEEECCCCEEEE
Confidence 45666677766677777766632222111000 011122245789999999999999874
No 72
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.96 E-value=8.1e+02 Score=28.49 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=66.4
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEe-cHHHHHHHHHHHhh-CCE--EEEcchhhhh-hh
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIE-IPRAALVADEIAKE-AEF--FSFGTNDLTQ-MT 886 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIE-tP~a~~~a~~ia~~-~Df--~sIGtNDLtq-~~ 886 (983)
.+.+=+|.. +.+|++.++.+. +.+. ...+.+++- .+..+ +...+. +|. +++++||+-. +-
T Consensus 38 ~IEvG~p~~-~~~~~e~i~~i~---------~~~~--~~~v~~~~r~~~~di---~~a~~~g~~~i~i~~~~Sd~~~~~~ 102 (363)
T TIGR02090 38 VIEAGFPIA-SEGEFEAIKKIS---------QEGL--NAEICSLARALKKDI---DKAIDCGVDSIHTFIATSPIHLKYK 102 (363)
T ss_pred EEEEeCCCC-ChHHHHHHHHHH---------hcCC--CcEEEEEcccCHHHH---HHHHHcCcCEEEEEEcCCHHHHHHH
Confidence 466667754 556765544322 1232 245555553 23333 333332 554 5669999753 22
Q ss_pred hcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC--ChHHHHH----HHHcC
Q 039683 887 FGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG--EPSSVAF----FAEAG 960 (983)
Q Consensus 887 la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~--~p~~~~~----l~~lG 960 (983)
++.+| +.+.+.+..+++.+++ .|..|.+|.|.++ +|+.+.. +.++|
T Consensus 103 ~~~~~--------------------------~~~~~~~~~~i~~ak~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g 154 (363)
T TIGR02090 103 LKKSR--------------------------DEVLEKAVEAVEYAKE--HGLIVEFSAEDATRTDIDFLIKVFKRAEEAG 154 (363)
T ss_pred hCCCH--------------------------HHHHHHHHHHHHHHHH--cCCEEEEEEeecCCCCHHHHHHHHHHHHhCC
Confidence 22211 3556666777777776 5889999888774 6666554 56889
Q ss_pred CCEEecCC
Q 039683 961 LDYVSCSP 968 (983)
Q Consensus 961 ~~~~Sv~p 968 (983)
.+.|++.-
T Consensus 155 ~~~i~l~D 162 (363)
T TIGR02090 155 ADRINIAD 162 (363)
T ss_pred CCEEEEeC
Confidence 99987654
No 73
>PRK08245 hypothetical protein; Validated
Probab=31.44 E-value=2.3e+02 Score=31.04 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHhcCCCeEEEecCCCcchHhhh----------hhhceEEEccCCccchHHHhhcccCceEEeccCccc-------cccC
Q 039683 527 WHAQGKSAILVRTETSPEDIGGM----------HAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIR-------VNDN 589 (983)
Q Consensus 527 ~~~~~~~~ILV~~~~~P~~~~~l----------~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~-------~~~~ 589 (983)
+...++|.|||.+.....+...+ ..+.|+|+.-+- .-=..| +++|.|+-..-.... ....
T Consensus 82 id~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~v-RD~~ei--~~~gfPvfarg~~p~~~~~~~~~~~~ 158 (240)
T PRK08245 82 IETCPPGCVLVVDARGDARAGSFGDILCTRLKKRGVAGLVTDGGV-RDSPGI--AALGLPVWCAGPSAPTNLTGLTAVDI 158 (240)
T ss_pred HhccCCCeEEEEECCCCCCccccHHHHHHHHHHCCCeEEEEeecc-CCHHHH--hhCCCceEecccCCCCCCCCCceEee
Confidence 44567889999876543332221 137999998444 443444 678888766322210 1122
Q ss_pred CceEEeccEEeeCCCEEEEECCccEEEEc
Q 039683 590 EKSIVVGDMVISEGDWLSLNGSTGEVILG 618 (983)
Q Consensus 590 ~~~~~~~~~~l~~G~~VtlDg~~G~V~~g 618 (983)
.-.+.+++..+.+||.|.=| .+|.|.+-
T Consensus 159 nvPV~igGv~V~PGD~I~aD-~dGVvvIP 186 (240)
T PRK08245 159 NVPIGCGGVAVFPGDIIVAD-DDGVVVIP 186 (240)
T ss_pred cCCEEECCEEEcCCCEEEEc-CCceEEEc
Confidence 24678899999999999999 78887654
No 74
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.92 E-value=5e+02 Score=28.10 Aligned_cols=49 Identities=20% Similarity=0.038 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCC--------hHHHHHHHHcCCCEEecCCC
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGE--------PSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~--------p~~~~~l~~lG~~~~Sv~p~ 969 (983)
...+.+..+++.+++ .|+++.++-+.+.. .+.+..+.++|++.+++...
T Consensus 112 ~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 112 EDLENAEEAIEAAKE--AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHHHHHHHHHH--CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 344555556666765 58899888877776 77788889999999987543
No 75
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=30.74 E-value=2.5e+02 Score=29.12 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHhcCCCeEEEecCCCcchHh----hh------hhhceEEEccCCccchHHHhhcccCceEEec-cCc-----cccccCC
Q 039683 527 WHAQGKSAILVRTETSPEDIG----GM------HAAAGILTARGGMTSHAAVVARGWGKCCVSG-CSD-----IRVNDNE 590 (983)
Q Consensus 527 ~~~~~~~~ILV~~~~~P~~~~----~l------~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvG-v~~-----~~~~~~~ 590 (983)
+...++|.|||...-...+.. .+ +.++|+|+.-.-.-... | |++|.|+-.- ... ....+..
T Consensus 52 l~~~~~GdVlVid~~g~~~~a~~G~~~a~~a~~~G~aG~VidG~vRD~~~-i--~~l~fPVfa~g~~p~~~~~~~~~~~n 128 (163)
T PRK12487 52 LAQDGKGKVLVVDGGGSCRRALLGDQIAQSALDNGWEGIVINGCVRDVGA-L--STMDLGVKALGASPIKTEKRGQGEVN 128 (163)
T ss_pred HhcCCCCeEEEEECCCCCCcEeehHHHHHHHHHCCCeEEEEeecccCHHH-H--hhCCCCeEEeecCCCCCCCCCcceec
Confidence 445678889987643321211 11 23789998877766654 2 6777776542 111 0111223
Q ss_pred ceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 591 KSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 591 ~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
..+.+++..+++||+|.-| .+|.|..
T Consensus 129 vPV~iggv~V~PGDiI~aD-~dGVvvi 154 (163)
T PRK12487 129 VTLTMGNVIIEPGDMLYAD-ENGIAVS 154 (163)
T ss_pred ccEEECCEEECCCCEEEEc-CCCEEEE
Confidence 5678899999999999999 6688876
No 76
>PRK06201 hypothetical protein; Validated
Probab=29.81 E-value=2.8e+02 Score=30.06 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=53.6
Q ss_pred HHhcCCCeEEEecCCCcchHhhh----------hhhceEEEccCCccchHHHhhcccCceEEeccCccc------cccCC
Q 039683 527 WHAQGKSAILVRTETSPEDIGGM----------HAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIR------VNDNE 590 (983)
Q Consensus 527 ~~~~~~~~ILV~~~~~P~~~~~l----------~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~------~~~~~ 590 (983)
+...++|.|||.......+...+ ..++|+|+. |+..-=..| |++|.|+-..-.... .-...
T Consensus 74 i~~~~pG~VlVid~~g~~~~a~~G~~~a~~a~~~G~~G~Vid-G~vRD~~~i--~~~~fPvfa~g~~p~~~~~~~~~~~n 150 (221)
T PRK06201 74 LDLARPGDVIVVDGGGDLTNALVGEIMLAIAARRGVAGVVID-GAVRDVAAL--REMGFPVFARGVTHRGPYKDGPGEIN 150 (221)
T ss_pred HhccCCCcEEEEECCCCCCccchhHHHHHHHHHCCCeEEEEe-eccCCHHHH--hhCCCCeEEeccCCCCCCCCCccccC
Confidence 33446778888754433222211 237999998 444444444 778888765322111 01123
Q ss_pred ceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 591 KSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 591 ~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
-.+.+++..+++||.|.=| .+|.|.+
T Consensus 151 ~pV~igGv~V~PGD~I~aD-~dGVvvi 176 (221)
T PRK06201 151 VPVAIGGMVIEPGDLIVGD-DDGLVAV 176 (221)
T ss_pred ccEEECCEEEcCCCEEEEc-CCceEEE
Confidence 4588899999999999999 7888875
No 77
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=29.71 E-value=2.5e+02 Score=29.08 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=53.9
Q ss_pred HHhcCCCeEEEecCCCcchHhh----h------hhhceEEEccCCccchHHHhhcccCceEEeccCc------cccccCC
Q 039683 527 WHAQGKSAILVRTETSPEDIGG----M------HAAAGILTARGGMTSHAAVVARGWGKCCVSGCSD------IRVNDNE 590 (983)
Q Consensus 527 ~~~~~~~~ILV~~~~~P~~~~~----l------~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~------~~~~~~~ 590 (983)
+...++|.|||...-...+... | +.++|+|+.-.-.-.+. | ++++.|+-.--.. ...-+..
T Consensus 52 id~~~pGdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG~vRD~~~-i--~~l~~PVfa~g~~p~~~~~~~~g~~n 128 (161)
T TIGR02998 52 LEQNGTGRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYGAVRQVDA-L--EELDIGIQALAAIPVGADEQGIGESD 128 (161)
T ss_pred HhccCCCeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEeecccCHHH-H--hhCCCCcEEeeccCCCCCCCCcceeC
Confidence 4445678888876433322211 1 24799999887777665 3 6788875431111 1111222
Q ss_pred ceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 591 KSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 591 ~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
-.+.+++..+++||+|.-| .+|.|..
T Consensus 129 vpV~iggv~V~PGD~IvaD-~DGVvVi 154 (161)
T TIGR02998 129 IAVNFAGVTFFPDDYIYAD-NTGIILS 154 (161)
T ss_pred CCEEECCEEECCCCEEEEc-CCcEEEE
Confidence 4578889999999999999 6677654
No 78
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=27.79 E-value=84 Score=32.58 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCC
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGE 945 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe 945 (983)
.+.+-++.+++..++..++.++-+||-
T Consensus 103 ~~~~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 103 TYQNNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 455556666666665446778888873
No 79
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.69 E-value=1.2e+02 Score=35.13 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=37.1
Q ss_pred CEEEEECCccEEEEcCCCCCCCCccchHHHHHHHhhhh--hceEEEecCCChHhHHHHHHcCCCcc
Q 039683 604 DWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADEI--RRLKVMANADTPDDALTARNNGAQGI 667 (983)
Q Consensus 604 ~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~aNi~~p~d~~~a~~~ga~GI 667 (983)
|.|+||-.+| ++........|.++. ....+..|+.+++++..+.+.|||||
T Consensus 123 d~iviD~AhG-------------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 123 KFICLDVANG-------------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIV 175 (343)
T ss_pred CEEEEECCCC-------------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEE
Confidence 8999998888 222223334444432 24678899999999999999999997
No 80
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.97 E-value=71 Score=32.05 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=9.2
Q ss_pred CEEEEcchhhh
Q 039683 873 EFFSFGTNDLT 883 (983)
Q Consensus 873 Df~sIGtNDLt 883 (983)
=++.+||||+.
T Consensus 52 vvl~~G~ND~~ 62 (169)
T cd01828 52 IFIMIGINDLA 62 (169)
T ss_pred EEEEeeccCCC
Confidence 37899999985
No 81
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.77 E-value=7.2e+02 Score=26.11 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred CceEEEEEecHHHHHHHHHHHhhCCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHH
Q 039683 849 DYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIAT 928 (983)
Q Consensus 849 ~~~vg~MIEtP~a~~~a~~ia~~~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~ 928 (983)
++.+|+.+..-.....+.++...+|++.+++-+-+ . . ..++. +...+.++++.
T Consensus 109 ~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g-----~----t--------------g~~~~----~~~~~~i~~~~ 161 (220)
T PRK05581 109 GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPG-----F----G--------------GQKFI----PEVLEKIRELR 161 (220)
T ss_pred CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCC-----C----C--------------ccccc----HHHHHHHHHHH
Confidence 46788888422335556778778999988874432 1 1 11121 23445555443
Q ss_pred HHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCch
Q 039683 929 ERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRV 971 (983)
Q Consensus 929 ~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~i 971 (983)
+.....+.+.++.+=| +=+++.++.+...|++.+.+.+..+
T Consensus 162 ~~~~~~~~~~~i~v~G--GI~~~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 162 KLIDERGLDILIEVDG--GINADNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred HHHHhcCCCceEEEEC--CCCHHHHHHHHHcCCCEEEEChhhh
Confidence 3322110123455644 2378999999999999998876543
No 82
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.54 E-value=4.7e+02 Score=29.15 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCch
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRV 971 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~i 971 (983)
...++++.+.+. .++|+..+|.. .+++.+..++..|.+.+++....+
T Consensus 218 ~~~~~i~~i~~~-----~~ipii~~GGI-~~~~da~~~l~~GAd~V~igra~l 264 (296)
T cd04740 218 IALRMVYQVYKA-----VEIPIIGVGGI-ASGEDALEFLMAGASAVQVGTANF 264 (296)
T ss_pred HHHHHHHHHHHh-----cCCCEEEECCC-CCHHHHHHHHHcCCCEEEEchhhh
Confidence 455666655433 25889888855 577888888899999999875543
No 83
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.36 E-value=9.6e+02 Score=26.95 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccccCCccCcEEEeecCCCHHH---HHHHHHHHHHHHHHHHHHcCCCCC-ceEEEEEecHHHHHHHHH
Q 039683 792 MQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQE---LGHQISLIRNVATKVFSEMGSSLD-YKVGTMIEIPRAALVADE 867 (983)
Q Consensus 792 ~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E---~~~~~~~~~~~~~~~~~~~g~~~~-~~vg~MIEtP~a~~~a~~ 867 (983)
.+++|+++||.+ ..-+-|+---.....- ...+...++.++++ +. +++..-.---.-...+.+
T Consensus 27 e~~~avi~aAe~------~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~--------~~~vpv~lhlDH~~~~e~i~~ 92 (282)
T TIGR01859 27 EWTQAILEAAEE------ENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIER--------MSIVPVALHLDHGSSYESCIK 92 (282)
T ss_pred HHHHHHHHHHHH------hCCCEEEEcCcchhhccCcHHHHHHHHHHHHHH--------CCCCeEEEECCCCCCHHHHHH
Q ss_pred HHhh-CCEEEEcchhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEE-cCC
Q 039683 868 IAKE-AEFFSFGTNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGI-CGE 945 (983)
Q Consensus 868 ia~~-~Df~sIGtNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~i-CGe 945 (983)
-++. ++.+-|.-.+|.. +...++.+++++.|++ .|..|.. +|.
T Consensus 93 ai~~Gf~sVmid~s~l~~---------------------------------~eni~~t~~v~~~a~~--~gv~Ve~ElG~ 137 (282)
T TIGR01859 93 AIKAGFSSVMIDGSHLPF---------------------------------EENLALTKKVVEIAHA--KGVSVEAELGT 137 (282)
T ss_pred HHHcCCCEEEECCCCCCH---------------------------------HHHHHHHHHHHHHHHH--cCCEEEEeeCC
Q ss_pred CCC-------------ChHHHHHHHH-cCCCEEecC
Q 039683 946 HGG-------------EPSSVAFFAE-AGLDYVSCS 967 (983)
Q Consensus 946 ~a~-------------~p~~~~~l~~-lG~~~~Sv~ 967 (983)
.++ +|+.+..++. .|+|++.++
T Consensus 138 ~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 138 LGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred CcCccccccccccccCCHHHHHHHHHHHCcCEEeec
No 84
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=26.36 E-value=57 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.8
Q ss_pred EEeeCCCEEEEECCccEEEEc
Q 039683 598 MVISEGDWLSLNGSTGEVILG 618 (983)
Q Consensus 598 ~~l~~G~~VtlDg~~G~V~~g 618 (983)
+.+++||.|+||-.+|.|...
T Consensus 107 ~~l~~gd~i~idl~~~~v~~~ 127 (163)
T PRK00439 107 DKIEDGDEVEVDLETGVITNL 127 (163)
T ss_pred HhcCCCCEEEEECCCCEEEeC
Confidence 457999999999999988654
No 85
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=26.29 E-value=74 Score=33.56 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCC
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHG 947 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a 947 (983)
.+.+-++.+++..++..++.++.+|+-..
T Consensus 110 ~~~~~l~~ii~~l~~~~P~~~Iil~~~~p 138 (214)
T cd01820 110 EIAEGILAIVEEIREKLPNAKILLLGLLP 138 (214)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 34444444555555444677888887443
No 86
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=26.02 E-value=1e+02 Score=36.80 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEec
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSC 966 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv 966 (983)
+|.++|+.+-++.+. .+++++.+-||+-.+|.-+..|.++|+..+..
T Consensus 119 GVeRAV~~A~ea~~~-~p~~~Iy~lgeIIHNp~Vv~~L~~~GV~~I~~ 165 (460)
T PLN02821 119 GVERAVQIAYEARKQ-FPDEKLWITNEIIHNPTVNKRLEEMNVQFIEV 165 (460)
T ss_pred cHHHHHHHHHHHHhh-CCCCCeEEecCCccCHHHHHHHHHCCCEEecc
Confidence 899999988765433 35789999999999999999999999998864
No 87
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=25.86 E-value=3e+02 Score=35.46 Aligned_cols=183 Identities=19% Similarity=0.253 Sum_probs=111.0
Q ss_pred HHHHHHHHHHcCCC--------hhhhhhhhhccccCCCCCCCccccccCCChHHHHHHHHHHHHHHHHcccc-CCccCcE
Q 039683 744 EQIVNELTLETGMS--------EDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSNH-RFKVFPE 814 (983)
Q Consensus 744 ~~~~~~~~~~~G~~--------~dk~~~~~~~~~E~NP~LG~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~~-g~~~~l~ 814 (983)
++.+.||.+..|.. .+|.---+.++.+.-|++.-. ..+-+..+..| +++|++..+... |...--.
T Consensus 415 ~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~-----~~~Se~t~~~L-~t~r~a~~~~~~~G~~~i~~ 488 (910)
T COG2352 415 EEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPF-----WQPSEETREEL-ATFRVAAEAKDEFGEDAIGA 488 (910)
T ss_pred HHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCC-----CCCCHHHHHHH-HHHHHHHHHHHHhhhhhhhh
Confidence 45666776655532 244433445566777877532 33445555544 556665554333 3222345
Q ss_pred EEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCC----CCceEEEEEecHHHHHHHHHHHhh---CCE---EEEcchhhhh
Q 039683 815 IMVPLVGTPQELGHQISLIRNVATKVFSEMGSS----LDYKVGTMIEIPRAALVADEIAKE---AEF---FSFGTNDLTQ 884 (983)
Q Consensus 815 ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~----~~~~vg~MIEtP~a~~~a~~ia~~---~Df---~sIGtNDLtq 884 (983)
=+|-|.+++.++.++.=++ ++.|+. +.++|-...||-.-+.++..|... .|+ +.-|-++...
T Consensus 489 yIISma~s~SDvLev~lLl--------KE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QE 560 (910)
T COG2352 489 YIISMAESVSDVLEVLLLL--------KEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQE 560 (910)
T ss_pred hhhhccCCHHHHHHHHHHH--------HHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceE
Confidence 6889999999998876443 356775 478999999999999999998876 333 3444455666
Q ss_pred hhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEE-cCC-----CCCChHHHHHHH
Q 039683 885 MTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGI-CGE-----HGGEPSSVAFFA 957 (983)
Q Consensus 885 ~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~i-CGe-----~a~~p~~~~~l~ 957 (983)
-++|++=.|.+ -|++..+- ++.++-...++-|++ +|+.+-+ -|- -+|-|.+.+.|.
T Consensus 561 VMlGYSDSnKD--------gG~laa~W-------a~y~Aq~aLv~~~~~--~gV~LrlFHGRGGtVGRGGGPa~~AILs 622 (910)
T COG2352 561 VMLGYSDSNKD--------GGYLAANW-------ALYKAQLALVELCEK--AGVELRLFHGRGGSVGRGGGPAYAAILS 622 (910)
T ss_pred EEecccccccc--------cchhhhHH-------HHHHHHHHHHHHHHH--hCceEEEEccCCCCCCCCCchHHHHHhc
Confidence 66677655541 13333332 555666666667776 4777766 121 234677777663
No 88
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.09 E-value=2.8e+02 Score=31.45 Aligned_cols=92 Identities=27% Similarity=0.323 Sum_probs=51.9
Q ss_pred eeCC-CEEEEECCccEEEEcCCCCCCCCcc-chHHHHHHHhhhh--hceEEEecCCCh--H----hHHHHHHcCCCcccc
Q 039683 600 ISEG-DWLSLNGSTGEVILGKQPLAPPAMS-GDLEIFMSWADEI--RRLKVMANADTP--D----DALTARNNGAQGIGL 669 (983)
Q Consensus 600 l~~G-~~VtlDg~~G~V~~g~~~~~~~~~~-~~~~~~~~~~~~~--~~i~v~aNi~~p--~----d~~~a~~~ga~GIGL 669 (983)
+..| +-|.+.|++|+.+ .++ ++..++.....+. .++.|.+.++.. + -++.|.+.|+|||=+
T Consensus 35 i~~Gv~gi~~~GttGE~~---------~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~ 105 (299)
T COG0329 35 IAAGVDGLVVLGTTGESP---------TLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILV 105 (299)
T ss_pred HHcCCCEEEECCCCccch---------hcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 4455 5677778887553 122 2223332222221 234455544443 3 345668899999832
Q ss_pred chhhhhhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcCCCcEEEE
Q 039683 670 CRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIR 728 (983)
Q Consensus 670 ~RTE~~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~~~pVtiR 728 (983)
.=. -+..+++++ +++.|+.|+++. +.|+++=
T Consensus 106 v~P----------------yY~k~~~~g-----------l~~hf~~ia~a~-~lPvilY 136 (299)
T COG0329 106 VPP----------------YYNKPSQEG-----------LYAHFKAIAEAV-DLPVILY 136 (299)
T ss_pred eCC----------------CCcCCChHH-----------HHHHHHHHHHhc-CCCEEEE
Confidence 111 122345544 789999999998 9998875
No 89
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=24.55 E-value=1.2e+02 Score=34.11 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEE
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYV 964 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~ 964 (983)
+|.++|+.+-++... .+|+++.+-|++-.+|.-+..|.++|+..+
T Consensus 14 GV~rAi~~a~~~~~~-~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v 58 (281)
T PRK12360 14 GVKRAIDTAYDEIEK-NDGKKIYTLGPLIHNNQVVSDLEEKGVKTI 58 (281)
T ss_pred cHHHHHHHHHHHHHh-cCCCCeEEecCCcCCHHHHHHHHHCcCEEE
Confidence 899999877665432 247899999999999999999999999887
No 90
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=23.95 E-value=4.4e+02 Score=29.55 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCCc
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFR 970 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~~ 970 (983)
..+++++++.+. .++||..||-. .+++.+..++..|.+.+++....
T Consensus 221 ~~l~~v~~i~~~-----~~ipvi~~GGI-~~~~da~~~l~aGAd~V~igr~l 266 (301)
T PRK07259 221 IALRMVYQVYQA-----VDIPIIGMGGI-SSAEDAIEFIMAGASAVQVGTAN 266 (301)
T ss_pred ccHHHHHHHHHh-----CCCCEEEECCC-CCHHHHHHHHHcCCCceeEcHHH
Confidence 445666655432 26899988854 57888888888999988876443
No 91
>PRK09262 hypothetical protein; Provisional
Probab=23.61 E-value=3.8e+02 Score=29.18 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHhcCCCeEEEecCCCcchHhh----h------hhhceEEEccCCccchHHHhhcccCceEEeccCcc-c-----cccCC
Q 039683 527 WHAQGKSAILVRTETSPEDIGG----M------HAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDI-R-----VNDNE 590 (983)
Q Consensus 527 ~~~~~~~~ILV~~~~~P~~~~~----l------~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~-~-----~~~~~ 590 (983)
+...++|.|||...-.+.+... + ..++|+|+. |...-=..| +++|.|+-..--.. . .-.-.
T Consensus 72 i~~~~pGdVlVid~~g~~~~a~~Ge~~a~~a~~~G~~GiVid-G~vRD~~~i--~~l~~Pvfa~g~~p~~~~~~~~~~~n 148 (225)
T PRK09262 72 VEQCQPGDVLVVAPTSPCTDGFFGDLLATSLQARGVRGLVID-AGVRDVRTL--TEMGFPVWSRAISAQGTVKATLGSVN 148 (225)
T ss_pred HHccCCCCEEEEECCCCCceeeehHHHHHHHHHCCCeEEEEe-ceeCCHHHH--hhCCCceEEeecCCCCCCCCCcceec
Confidence 3345677888876433322111 1 247999998 444444445 66788865522111 0 00122
Q ss_pred ceEEeccEEeeCCCEEEEECCccEEEE
Q 039683 591 KSIVVGDMVISEGDWLSLNGSTGEVIL 617 (983)
Q Consensus 591 ~~~~~~~~~l~~G~~VtlDg~~G~V~~ 617 (983)
-.+.+++..+++||.|.=| .+|.|.+
T Consensus 149 vpV~iggv~V~PGD~IvaD-~dGVvvI 174 (225)
T PRK09262 149 VPVVCAGALVNPGDVVVAD-DDGVVVV 174 (225)
T ss_pred ccEEECCEEECCCCEEEEE-CCcEEEE
Confidence 4577899999999999999 5688875
No 92
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=23.18 E-value=3e+02 Score=29.98 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=54.2
Q ss_pred HHhcCCCeEEEecCCCcch---H-hhh------hhhceEEEccCCccchHHHhhcccCceEEeccCccc------cccCC
Q 039683 527 WHAQGKSAILVRTETSPED---I-GGM------HAAAGILTARGGMTSHAAVVARGWGKCCVSGCSDIR------VNDNE 590 (983)
Q Consensus 527 ~~~~~~~~ILV~~~~~P~~---~-~~l------~~a~GiVt~~Gg~tSHaAIvAR~lgIP~VvGv~~~~------~~~~~ 590 (983)
+...++|.|||...-...+ . ..+ ..++|+|+.-+-.-+.. | |++|.|+-..-.... .-...
T Consensus 70 i~~~~pGdVlVid~~g~~~~a~~G~~~a~~a~~~G~~GiVidG~vRD~~~-i--~~l~~Pvfa~g~~p~~~~~~~~~~~n 146 (222)
T TIGR02798 70 AEQIQEGDVVVAACTAECEDGYFGDLLATSFQARGCRGLIIDAGVRDVRD-L--TEMNFPVWSKAIHAKGTVKATLGSVN 146 (222)
T ss_pred HHhCCCCeEEEEECCCCcceEeehHHHHHHHHHCCCeEEEEecccCCHHH-H--hhCCCceEEeecCCCCCCCCCccccC
Confidence 3445788999976433211 1 111 23799998877666554 3 678888554211110 01112
Q ss_pred ceEEeccEEeeCCCEEEEECCccEEEEc
Q 039683 591 KSIVVGDMVISEGDWLSLNGSTGEVILG 618 (983)
Q Consensus 591 ~~~~~~~~~l~~G~~VtlDg~~G~V~~g 618 (983)
-.+.+++..+++||+|.=| .+|.|.+-
T Consensus 147 vpv~iggv~V~PGD~i~aD-~dGVvviP 173 (222)
T TIGR02798 147 IPVVCANALVNPGDVVVAD-DDGVVVVP 173 (222)
T ss_pred CCEEECCEEECCCCEEEEc-CCcEEEEc
Confidence 4577899999999999999 66888654
No 93
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.63 E-value=1.5e+02 Score=35.11 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=34.3
Q ss_pred CEEEEECCccEEEEcCCCCCCCCccchHHHHHHHhhh-hhceEE-EecCCChHhHHHHHHcCCCccc
Q 039683 604 DWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWADE-IRRLKV-MANADTPDDALTARNNGAQGIG 668 (983)
Q Consensus 604 ~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~~~~~-~~~i~v-~aNi~~p~d~~~a~~~ga~GIG 668 (983)
|.|.||...|. +........+.+. ...+.| ..|+.+++++..+.+.|||+|+
T Consensus 167 DvI~iD~a~g~-------------~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 167 DILVIDSAHGH-------------STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CEEEEECCCCC-------------ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEE
Confidence 67888988852 1112222233332 223444 6699999999999999999986
No 94
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.59 E-value=1.3e+02 Score=35.24 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEe
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVS 965 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~S 965 (983)
+|.++|+.+-++.+. .+++++.+-|++-.+|.-+..|.++|+..+.
T Consensus 51 GV~RAI~~a~~~~~~-~~~~~vytlG~IIHNp~Vv~~L~~~Gv~~v~ 96 (387)
T PRK13371 51 GVERAVAMAYETRRH-FPDERIWITNEIIHNPSVNQHLREMGVRFIP 96 (387)
T ss_pred cHHHHHHHHHHHHhh-cCCCCeEEecCCcCCHHHHHHHHhCCCEEEc
Confidence 899999888665433 2478999999999999999999999999885
No 95
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=22.35 E-value=1.6e+03 Score=29.91 Aligned_cols=131 Identities=13% Similarity=0.221 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHHHHHccccCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHH
Q 039683 786 YPELTEMQVRAIFQAAVSMSNHRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVA 865 (983)
Q Consensus 786 ~p~i~~~QlrAi~rAa~~~~~~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a 865 (983)
+++..+..+ ++++++.+++++.. -.-++||.++++++..+..+.+++.. .+....+.|..-+||...+.++
T Consensus 524 ~s~~~~evl-~~f~~ia~~~~~al---g~yIISmt~~~sdiL~V~~l~k~~g~-----~~~~~~l~VvPLFETi~dL~~a 594 (974)
T PTZ00398 524 WPSEVNEVL-DTFKVCSELENEAL---GAYIISMCRNPSDILLVHVFQKEILK-----SGASKRQRVVPLLETIESLNSS 594 (974)
T ss_pred CCHHHHHHH-HHHHHHHHcccccc---ceeeeCCCCCHHHHHHHHHHHHHhCC-----cCCCCCcCeeCCcCCHHHHHhH
Confidence 444444333 55677666655433 45899999999999988766554210 1112257899999999999999
Q ss_pred HHHHhh-CC--EE---EEc-chhhhhhhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCC
Q 039683 866 DEIAKE-AE--FF---SFG-TNDLTQMTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSL 938 (983)
Q Consensus 866 ~~ia~~-~D--f~---sIG-tNDLtq~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~ 938 (983)
++|.+. .+ .+ .-| .++-..-++|++=.+. .-|++..+- ++.++.....+.|++ .|+
T Consensus 595 ~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~K--------d~G~laa~w-------~l~~Aq~~L~~~~~~--~gV 657 (974)
T PTZ00398 595 SKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGK--------DGGRLTSAW-------ELYKAQERLSNIARQ--YGV 657 (974)
T ss_pred HHHHHHHHcCHHHHHHHhhccCCeEEEEEecccccc--------cccHHHHHH-------HHHHHHHHHHHHHHH--cCC
Confidence 999987 32 00 001 1233334445532221 112222221 677777788888877 588
Q ss_pred eEEE
Q 039683 939 KVGI 942 (983)
Q Consensus 939 ~v~i 942 (983)
++.+
T Consensus 658 ~l~~ 661 (974)
T PTZ00398 658 EIRF 661 (974)
T ss_pred cEEE
Confidence 8776
No 96
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=22.08 E-value=1.5e+02 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 918 KGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 918 ~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
+.+.++++.+ +...+...+.++|-. +++.++.+...|+|.+|++.
T Consensus 112 ~~~~~~v~~l----~~~~~~v~ie~SGGI--~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 112 EDLKEAVEEL----RELNPRVKIEASGGI--TLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHHH----HHHTTTSEEEEESSS--STTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHHH----hhcCCcEEEEEECCC--CHHHHHHHHhcCCCEEEcCh
Confidence 3555555544 222245788888865 88999999999999999864
No 97
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.87 E-value=3.1e+02 Score=31.08 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=53.1
Q ss_pred CEEEEECCccEEEEcCCCCCCCCccchHHHHHH-Hhhhh-hceEEEecCC--ChHhH----HHHHHcCCCccccchhhhh
Q 039683 604 DWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMS-WADEI-RRLKVMANAD--TPDDA----LTARNNGAQGIGLCRTEHM 675 (983)
Q Consensus 604 ~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~-~~~~~-~~i~v~aNi~--~p~d~----~~a~~~ga~GIGL~RTE~~ 675 (983)
+-|.+.|++|+.+.=. .++..++.. +.+.. -++.|.++++ +.+++ +.|.+.|||||-+.-- |.
T Consensus 44 ~Gi~v~GstGE~~~Lt--------~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P-~y 114 (309)
T cd00952 44 DGILTMGTFGECATLT--------WEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP-MW 114 (309)
T ss_pred CEEEECcccccchhCC--------HHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC-cC
Confidence 4566778888664211 122233322 22211 3466777775 34443 4567889999864332 11
Q ss_pred hcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcCCCcEEEEecCCC
Q 039683 676 FFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPP 733 (983)
Q Consensus 676 f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~~~pVtiR~lD~~ 733 (983)
..+++++ .++.|+.|+++.++.||.|= ++|
T Consensus 115 ---------------~~~~~~~-----------l~~yf~~va~a~~~lPv~iY--n~P 144 (309)
T cd00952 115 ---------------LPLDVDT-----------AVQFYRDVAEAVPEMAIAIY--ANP 144 (309)
T ss_pred ---------------CCCCHHH-----------HHHHHHHHHHhCCCCcEEEE--cCc
Confidence 1235443 68889999998667999885 444
No 98
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=21.60 E-value=3.2e+02 Score=30.74 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=51.9
Q ss_pred CEEEEECCccEEEEcCCCCCCCCcc-chHHHHHH-Hhhhh-hceEEEecCCC--hHh----HHHHHHcCCCccccchhhh
Q 039683 604 DWLSLNGSTGEVILGKQPLAPPAMS-GDLEIFMS-WADEI-RRLKVMANADT--PDD----ALTARNNGAQGIGLCRTEH 674 (983)
Q Consensus 604 ~~VtlDg~~G~V~~g~~~~~~~~~~-~~~~~~~~-~~~~~-~~i~v~aNi~~--p~d----~~~a~~~ga~GIGL~RTE~ 674 (983)
+-|.+.|++|+-+. ++ ++..++.+ +.+.. -++.|+++++. .++ ++.|.+.|+||+-+.--
T Consensus 36 ~gi~v~GstGE~~~---------Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP-- 104 (294)
T TIGR02313 36 HAISVGGTSGEPGS---------LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP-- 104 (294)
T ss_pred CEEEECccCccccc---------CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc--
Confidence 45667777775531 22 22233322 22221 34677777763 333 35667889999854221
Q ss_pred hhcccchhhHHHHHHhhcCCHHHHHHHHHhhchhHHHHHHHHHHHcCCCcEEEE
Q 039683 675 MFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIR 728 (983)
Q Consensus 675 ~f~~~~~~~p~v~~~~~~~~ee~~~~~l~~l~~~q~~~y~~i~~a~~~~pVtiR 728 (983)
.+..+++++ .++.|+.|+++.++.||.+=
T Consensus 105 --------------~y~~~~~~~-----------l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 --------------YYNKPNQEA-----------LYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred --------------cCCCCCHHH-----------HHHHHHHHHHhccCCCEEEE
Confidence 112245543 67889999998768999886
No 99
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.59 E-value=1.4e+02 Score=36.30 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=36.7
Q ss_pred CCEEEEECCccEEEEcCCCCCCCCccchHHHHHHHhh-hhhceEEEe-cCCChHhHHHHHHcCCCccc
Q 039683 603 GDWLSLNGSTGEVILGKQPLAPPAMSGDLEIFMSWAD-EIRRLKVMA-NADTPDDALTARNNGAQGIG 668 (983)
Q Consensus 603 G~~VtlDg~~G~V~~g~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~a-Ni~~p~d~~~a~~~ga~GIG 668 (983)
-+.|.||..+|. .........+.+ ....+.|++ |+.+.+.+..+.+.|||+|+
T Consensus 240 vd~i~~D~a~~~-------------~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 240 VDVLVVDTAHGH-------------QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred CCEEEEeccCCc-------------cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEE
Confidence 356888988884 111122222222 234578888 99999999999999999875
No 100
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.54 E-value=4.1e+02 Score=30.05 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 918 KGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 918 ~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
+.+.++++.+ ++.++..++...|-. +++.++.+...|+|.+|++.
T Consensus 228 e~l~~av~~~----~~~~~~i~leAsGGI--t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 228 DLMQQAVQLI----RQQNPRVKIEASGNI--TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHHHHH----HhcCCCeEEEEECCC--CHHHHHHHHHcCCCEEEEch
Confidence 3455555432 222246788887755 89999999999999999986
No 101
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.23 E-value=1.5e+03 Score=27.48 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=67.5
Q ss_pred CcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhh-CCE--EEEcchhhhh-hhh
Q 039683 812 FPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKE-AEF--FSFGTNDLTQ-MTF 887 (983)
Q Consensus 812 ~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~-~Df--~sIGtNDLtq-~~l 887 (983)
.+.+=+|. .+..|++.++.+. +.+. ...+.+++-.- ....+...+. ++. +++.++|+-. +-|
T Consensus 40 ~IE~G~p~-~~~~d~e~v~~i~---------~~~~--~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l 105 (488)
T PRK09389 40 VIEAGSAI-TSEGEREAIKAVT---------DEGL--NAEICSFARAV--KVDIDAALECDVDSVHLVVPTSDLHIEYKL 105 (488)
T ss_pred EEEEeCCc-CCHHHHHHHHHHH---------hcCC--CcEEEeecccC--HHHHHHHHhCCcCEEEEEEccCHHHHHHHh
Confidence 46777775 5677776655432 1222 24555555431 1223333332 443 6788888853 222
Q ss_pred cCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCC--ChHHHHHH----HHcCC
Q 039683 888 GYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGG--EPSSVAFF----AEAGL 961 (983)
Q Consensus 888 a~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~--~p~~~~~l----~~lG~ 961 (983)
+. + .+.+++.+..+++.+++ .|..|.+|.|.+. +|+++..+ .+.|.
T Consensus 106 ~~--------------------s------~~e~l~~~~~~v~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga 157 (488)
T PRK09389 106 KK--------------------T------REEVLETAVEAVEYAKD--HGLIVELSGEDASRADLDFLKELYKAGIEAGA 157 (488)
T ss_pred CC--------------------C------HHHHHHHHHHHHHHHHH--CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCC
Confidence 22 1 14667777777788876 5888888888775 77777443 57899
Q ss_pred CEEecC
Q 039683 962 DYVSCS 967 (983)
Q Consensus 962 ~~~Sv~ 967 (983)
+.|.++
T Consensus 158 ~~i~l~ 163 (488)
T PRK09389 158 DRICFC 163 (488)
T ss_pred CEEEEe
Confidence 988764
No 102
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=21.19 E-value=4.4e+02 Score=29.76 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 918 KGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 918 ~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
+.+.++++.+ ++.+++..+.+.|-. +++.++.+.+.|+|.+|++.
T Consensus 221 e~l~~av~~~----~~~~~~~~leaSGGI--~~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 221 QQATEIAQIA----PSLAPHCTLSLAGGI--NLNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHHh----hccCCCeEEEEECCC--CHHHHHHHHhcCCCEEEECc
Confidence 3455555432 221245677776644 89999999999999999875
No 103
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.94 E-value=1.1e+03 Score=25.88 Aligned_cols=187 Identities=19% Similarity=0.226 Sum_probs=101.9
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHcCCChhhhhhhhhccccCC---CCCCCccccccCCChHHHHHHHHHHHHHHHHccc
Q 039683 730 LDPPLHEFLPEGDLEQIVNELTLETGMSEDEVFSRIEKLSEVN---PMLGFRGCRLGISYPELTEMQVRAIFQAAVSMSN 806 (983)
Q Consensus 730 lD~~~~eflp~~~~~~~~~~~~~~~G~~~dk~~~~~~~~~E~N---P~LG~RGiR~~l~~p~i~~~QlrAi~rAa~~~~~ 806 (983)
+-+|..+.+.||-.=|--..-+-..|.+-+++++.++...+.+ |.. + +...+ .+|+.=+...++.+.+
T Consensus 43 lGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~----m~Y~N-pi~~~G~e~f~~~~~~--- 113 (256)
T TIGR00262 43 LGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-L----LTYYN-LIFRKGVEEFYAKCKE--- 113 (256)
T ss_pred ECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-E----EEecc-HHhhhhHHHHHHHHHH---
Confidence 4566555555653222222223355777777777766554332 432 1 12223 3344333444444443
Q ss_pred cCCccCcEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecHHHHHHHHHHHhhCC-EEEEcc-hhhhh
Q 039683 807 HRFKVFPEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEIPRAALVADEIAKEAE-FFSFGT-NDLTQ 884 (983)
Q Consensus 807 ~g~~~~l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEtP~a~~~a~~ia~~~D-f~sIGt-NDLtq 884 (983)
.|+ -+|++|-.. .+|...+.+.++ +.| +..+.+|=--.-...+..|++.++ |+.+-| |.-|.
T Consensus 114 aGv---dgviipDlp-~ee~~~~~~~~~--------~~g----l~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG 177 (256)
T TIGR00262 114 VGV---DGVLVADLP-LEESGDLVEAAK--------KHG----VKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTG 177 (256)
T ss_pred cCC---CEEEECCCC-hHHHHHHHHHHH--------HCC----CcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCC
Confidence 232 488999775 366666554432 334 344444321122456678888888 665533 33221
Q ss_pred hhhcCcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEE
Q 039683 885 MTFGYSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYV 964 (983)
Q Consensus 885 ~~la~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~ 964 (983)
. | ..+. +.+.+.|+++-+.. ++|+.+ |---.+|+.+..+.+.|.|-+
T Consensus 178 ----~-~------------------~~~~----~~~~~~i~~lr~~~-----~~pi~v-gfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 178 ----A-R------------------NRAA----SALNELVKRLKAYS-----AKPVLV-GFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred ----C-c------------------ccCC----hhHHHHHHHHHhhc-----CCCEEE-eCCCCCHHHHHHHHHcCCCEE
Confidence 0 1 1122 35777887764432 456554 645568999999999999999
Q ss_pred ecCCCchHHH
Q 039683 965 SCSPFRVPIA 974 (983)
Q Consensus 965 Sv~p~~i~~~ 974 (983)
-|.+..+-..
T Consensus 225 VvGSaiv~~~ 234 (256)
T TIGR00262 225 IVGSAIVKII 234 (256)
T ss_pred EECHHHHHHH
Confidence 9987765443
No 104
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.92 E-value=1.3e+02 Score=31.48 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEcC
Q 039683 918 KGVGQLIKIATERGRAARPSLKVGICG 944 (983)
Q Consensus 918 ~aV~~lI~~~~~~a~~~~~g~~v~iCG 944 (983)
+.+.+-++.+++.+++ .|.++.++.
T Consensus 102 ~~~~~~l~~ii~~~~~--~~~~vil~t 126 (204)
T cd01830 102 EELIAGYRQLIRRAHA--RGIKVIGAT 126 (204)
T ss_pred HHHHHHHHHHHHHHHH--CCCeEEEec
Confidence 4677777788888876 377777755
No 105
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=20.79 E-value=1.2e+03 Score=28.32 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=70.0
Q ss_pred cEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEec--HHHH-HHHHHHHhh-CCEEEEcchhhhhhhhc
Q 039683 813 PEIMVPLVGTPQELGHQISLIRNVATKVFSEMGSSLDYKVGTMIEI--PRAA-LVADEIAKE-AEFFSFGTNDLTQMTFG 888 (983)
Q Consensus 813 l~ImiPmV~~~~E~~~~~~~~~~~~~~~~~~~g~~~~~~vg~MIEt--P~a~-~~a~~ia~~-~Df~sIGtNDLtq~~la 888 (983)
+-+-.|.-.+.+++++.++.....+.+..+.........+|+---. |.-- ..++++.+. .|++.||.....
T Consensus 122 LD~~t~~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~giVQGg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~----- 196 (487)
T PRK13533 122 LDIPTPPDVDYEEAEEELEETLERLEEAAELIQDGDMLWVAPVQGGTYPDLREESAREASKLGFDVYPIGAVVPL----- 196 (487)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCcccc-----
Confidence 3344566667777777766665554443321110112334443332 2222 345566665 999999942221
Q ss_pred CcCCCccccchhhhccCCCCCCCcccCCHHHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 889 YSRDDVGKFLPVYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 889 ~dR~~~~~~~~~y~~~~i~~~~p~~~~d~~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
. ..| ++ +.+.++|..+...- -++||..+-| .+.|..++.++.+|+|.|=|..
T Consensus 197 ~---------e~y---------~~-----~~~~~ii~~~~~~L---p~dkPryL~G--vG~P~~i~~~V~lGvDlFD~v~ 248 (487)
T PRK13533 197 M---------ERY---------RY-----DDLVDVVLAAKRGL---GPGAPVHLFG--AGHPMMFALAVALGCDLFDSAA 248 (487)
T ss_pred c---------ccC---------CH-----HHHHHHHHHHHhhC---CCCCceEEeC--CCCHHHHHHHHHhCCCceeccH
Confidence 0 011 11 35666666554432 2578999855 3799999999999999986554
No 106
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=20.50 E-value=3e+02 Score=32.22 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCCC
Q 039683 919 GVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPF 969 (983)
Q Consensus 919 aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p~ 969 (983)
.+.++|+.+...-- .+||..+-| .+.|..+..++.+|+|-|-|...
T Consensus 225 ~~~~~v~~~~~~lp---~~kPryl~G--vg~P~~i~~~v~~GvD~FD~~~p 270 (366)
T PRK00112 225 EMYRILEHTAPLLP---EDKPRYLMG--VGTPEDLVEGVARGVDMFDCVMP 270 (366)
T ss_pred HHHHHHHHHHhhCC---CcCCeEecC--CCCHHHHHHHHHcCCCEEeeCCc
Confidence 55566665544432 478999966 57999999999999998866543
No 107
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=20.42 E-value=4.5e+02 Score=29.58 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEcCCCCCChHHHHHHHHcCCCEEecCC
Q 039683 918 KGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSP 968 (983)
Q Consensus 918 ~aV~~lI~~~~~~a~~~~~g~~v~iCGe~a~~p~~~~~l~~lG~~~~Sv~p 968 (983)
+.+.++++.+ ++.+++..+.+.|-. +++.++.+.+.|+|.+|++.
T Consensus 220 e~l~~~v~~l----~~~~~~~~leasGGI--~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 220 QQLHHLHERL----KFFDHIPTLAAAGGI--NPENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHHHHHHH----hccCCCEEEEEECCC--CHHHHHHHHhcCCCEEEeCc
Confidence 4566666543 222356778887755 99999999999999999986
Done!