BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039685
MDPEGKNFGRGPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRK
GEGMQLDQLIQNTSRDTSARIQPFDLDVLREAFQLRETSPVDLPPVRNPIP

High Scoring Gene Products

Symbol, full name Information P value
AT5G19480 protein from Arabidopsis thaliana 2.1e-38
MED19A
AT5G12230 		protein from Arabidopsis thaliana 3.9e-37

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039685
        (111 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2150275 - symbol:AT5G19480 "AT5G19480" species...   411  2.1e-38   1
TAIR|locus:2177073 - symbol:MED19A "AT5G12230" species:37...   399  3.9e-37   1


>TAIR|locus:2150275 [details] [associations]
            symbol:AT5G19480 "AT5G19480" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0006355 GO:GO:0006351 EMBL:AF296837 eggNOG:NOG322121
            HOGENOM:HOG000070658 ProtClustDB:CLSN2686793 EMBL:AK175303
            EMBL:AK176603 EMBL:BT010517 IPI:IPI00548322 RefSeq:NP_001031907.1
            RefSeq:NP_197449.1 UniGene:At.31290 IntAct:Q6NQD9
            EnsemblPlants:AT5G19480.1 EnsemblPlants:AT5G19480.2 GeneID:832068
            KEGG:ath:AT5G19480 TAIR:At5g19480 InParanoid:Q6NQD9 OMA:NARIQPF
            PhylomeDB:Q6NQD9 Genevestigator:Q6NQD9 Uniprot:Q6NQD9
        Length = 207

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 80/114 (70%), Positives = 93/114 (81%)

Query:     1 MDPEGKNFGRGPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRK 60
             M+ E   FG GPREL GA+DLI+ YKLLPHH+FFCKRSLP S+SD HYLHN+VGDTEIRK
Sbjct:     1 MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 59

Query:    61 GEGMQLDQLIQN---TSRDTSARIQPFDLDVLREAFQLRETSPVDLPPVRNPIP 111
             GEGMQLDQLI N   +SRDT+ARIQPF LD L+EAF+L +T+PV+LPP     P
Sbjct:    60 GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAP 113


>TAIR|locus:2177073 [details] [associations]
            symbol:MED19A "AT5G12230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016592 "mediator complex" evidence=IDA]
            [GO:0000956 "nuclear-transcribed mRNA catabolic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
            GO:GO:0006351 GO:GO:0016592 EMBL:AB007727 EMBL:BT010725
            EMBL:BT011651 IPI:IPI00536212 RefSeq:NP_196784.1 UniGene:At.32163
            UniGene:At.66693 IntAct:Q9FMP0 PRIDE:Q9FMP0
            EnsemblPlants:AT5G12230.1 GeneID:831097 KEGG:ath:AT5G12230
            TAIR:At5g12230 eggNOG:NOG322121 HOGENOM:HOG000070658
            InParanoid:Q9FMP0 OMA:SKKHHDK PhylomeDB:Q9FMP0
            ProtClustDB:CLSN2686793 Genevestigator:Q9FMP0 Uniprot:Q9FMP0
        Length = 221

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 75/113 (66%), Positives = 93/113 (82%)

Query:     1 MDPEGKNFGRGPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRK 60
             M+PE   FG GPREL GA DLIS +KL+ HH+FFCK+SLP+S+SD+HYLHNVVGDTEIRK
Sbjct:     1 MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 59

Query:    61 GEGMQLDQLIQNTS--RDTSARIQPFDLDVLREAFQLRETSPVDLPPVRNPIP 111
             GEGMQLDQLI++ S  R+T+ RIQPFD+D L+E+FQL + +PV+LPP     P
Sbjct:    60 GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAP 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111       111   0.00091  102 3  11 22  0.47    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.00u 0.10s 13.10t   Elapsed:  00:00:00
  Total cpu time:  13.00u 0.10s 13.10t   Elapsed:  00:00:00
  Start:  Sat May 11 11:56:53 2013   End:  Sat May 11 11:56:53 2013

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