BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039685
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NQD9|MD19B_ARATH Probable mediator of RNA polymerase II transcription subunit 19b
OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1
Length = 207
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/114 (70%), Positives = 93/114 (81%), Gaps = 4/114 (3%)
Query: 1 MDPEGKNFGRGPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRK 60
M+ E FG GPREL GA+DLI+ YKLLPHH+FFCKRSLP S+SD HYLHN+VGDTEIRK
Sbjct: 1 MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 59
Query: 61 GEGMQLDQLIQN---TSRDTSARIQPFDLDVLREAFQLRETSPVDLPPVRNPIP 111
GEGMQLDQLI N +SRDT+ARIQPF LD L+EAF+L +T+PV+LPP P
Sbjct: 60 GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAP 113
>sp|Q9FMP0|MD19A_ARATH Mediator of RNA polymerase II transcription subunit 19a
OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1
Length = 221
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/113 (66%), Positives = 93/113 (82%), Gaps = 3/113 (2%)
Query: 1 MDPEGKNFGRGPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRK 60
M+PE FG GPREL GA DLIS +KL+ HH+FFCK+SLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1 MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 59
Query: 61 GEGMQLDQLIQNT--SRDTSARIQPFDLDVLREAFQLRETSPVDLPPVRNPIP 111
GEGMQLDQLI++ SR+T+ RIQPFD+D L+E+FQL + +PV+LPP P
Sbjct: 60 GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAP 112
>sp|O42889|YBN5_SCHPO Uncharacterized protein C8E4.05c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC8E4.05c PE=3 SV=1
Length = 447
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 39 LPLSISDTHYLHNVVGDTEIRK 60
+P+S+SD+ N+ GD EIRK
Sbjct: 1 MPVSVSDSFVFRNIFGDAEIRK 22
>sp|Q8C1S0|MED19_MOUSE Mediator of RNA polymerase II transcription subunit 19 OS=Mus
musculus GN=Med19 PE=1 SV=1
Length = 244
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 11 GPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISD 45
G ELTG+ +LI+HY L ++ FC + + +S+
Sbjct: 73 GSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSN 107
>sp|A0JLT2|MED19_HUMAN Mediator of RNA polymerase II transcription subunit 19 OS=Homo
sapiens GN=MED19 PE=1 SV=2
Length = 244
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 11 GPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISD 45
G ELTG+ +LI+HY L ++ FC + + +S+
Sbjct: 73 GSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSN 107
>sp|A8G4Z1|ACSF_PROM2 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus (strain MIT 9215) GN=acsF
PE=3 SV=1
Length = 390
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 27 LLPHHDFFCK---RSLPLSISDTHYLHNVVGDTEIRKGEGM---QLDQLIQNTSRDTSAR 80
L +H F K R L++ T Y+ + + G+ + DQ + N + +TSAR
Sbjct: 257 FLNNHPFVSKLWSRFFLLAVFATMYIRDQGTKKDFYSALGLDAREYDQFVINKTNETSAR 316
Query: 81 IQPFDLDVLREAFQLRETSPVD 102
+ P L+V ++F R S V+
Sbjct: 317 VFPVVLNVFDDSFYRRLDSIVE 338
>sp|P77148|YDHS_ECOLI Uncharacterized protein YdhS OS=Escherichia coli (strain K12)
GN=ydhS PE=4 SV=1
Length = 534
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 19 VDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRKGEGMQLDQL-------IQ 71
+ L+S +LP DF+C P+ H + + + EI+KGE LD++ I+
Sbjct: 238 ITLLSRTGILPEADFYC----PIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIK 293
Query: 72 NTSRDTSARI--QPFDLDVLREAF 93
D S RI + ++D +A+
Sbjct: 294 FADPDWSQRIALESLNVDSFAQAW 317
>sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor OS=Pichia angusta GN=PEX5
PE=3 SV=1
Length = 569
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 11 GPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRKGEGMQLDQLI 70
G E + ++ + HD ++SL S DTH + + + E ++Q +
Sbjct: 5 GGSECAANANPLAQFFKQSQHDTSLEQSLRNSAHDTHQNAQIRAPVAMNEAERAHMEQFM 64
Query: 71 QNTSRDTSARIQPF--DLDVLREAFQLRETSPVDLPPVRNPIP 111
+ T QP +L +++ Q + T + P +NP+P
Sbjct: 65 NQS---TPFNFQPMANELRMIQPDLQTQTTPALRGPRAQNPVP 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,925,165
Number of Sequences: 539616
Number of extensions: 1728788
Number of successful extensions: 3493
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3475
Number of HSP's gapped (non-prelim): 19
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)