Query 039685
Match_columns 111
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 21:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wk1_A Hypothetical protein YK 33.0 20 0.0007 23.0 1.7 26 29-58 121-146 (150)
2 2ko5_A Ring finger protein Z; 31.4 11 0.00039 26.6 0.3 11 34-44 66-76 (99)
3 1w4x_A Phenylacetone monooxyge 27.2 11 0.00039 29.7 -0.4 21 25-49 324-345 (542)
4 1wih_A Mitochondrial ribosome 26.4 15 0.00053 24.4 0.2 35 61-95 17-56 (84)
5 3m05_A Uncharacterized protein 25.7 17 0.00058 25.3 0.4 17 78-94 10-26 (114)
6 4ap3_A Steroid monooxygenase; 24.4 20 0.00067 29.0 0.5 21 26-50 330-351 (549)
7 3g14_A Nitroreductase family p 22.3 68 0.0023 21.8 2.9 37 63-99 1-37 (193)
8 3uox_A Otemo; baeyer-villiger 22.2 22 0.00075 28.7 0.4 21 26-50 325-346 (545)
9 3s7i_A Allergen ARA H 1, clone 21.9 34 0.0012 27.8 1.5 21 78-98 142-162 (418)
10 3eo8_A BLUB-like flavoprotein; 21.6 77 0.0026 21.3 3.0 35 63-97 1-35 (219)
No 1
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Caenorhabditis elegans} SCOP: d.169.1.1
Probab=33.05 E-value=20 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=19.6
Q ss_pred ccccccccccCccccccccccccCCCCeee
Q 039685 29 PHHDFFCKRSLPLSISDTHYLHNVVGDTEI 58 (111)
Q Consensus 29 ~h~effCKr~lp~sisdthYL~nVvGDtei 58 (111)
..+-|.|+++. .++.+--|++||..+
T Consensus 121 ~~~~fICe~~~----~~~~~~p~~~g~~~~ 146 (150)
T 1wk1_A 121 TPRPFICQKHR----YDSDHKPNTIGDASG 146 (150)
T ss_dssp SCBCCCEECCC----CCCCCCSCCCCCCCC
T ss_pred CCeeEEEeecC----CCCCCCCcccccccc
Confidence 45679999875 566778899998764
No 2
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=31.36 E-value=11 Score=26.57 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.6
Q ss_pred cccccCccccc
Q 039685 34 FCKRSLPLSIS 44 (111)
Q Consensus 34 fCKr~lp~sis 44 (111)
+||+|||+.|.
T Consensus 66 IC~~pLPtkl~ 76 (99)
T 2ko5_A 66 ICKMPLPTKLR 76 (99)
T ss_dssp TTTEECCCCSC
T ss_pred ccCCcCCccee
Confidence 69999999874
No 3
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=27.18 E-value=11 Score=29.74 Aligned_cols=21 Identities=29% Similarity=0.429 Sum_probs=16.1
Q ss_pred hcccc-cccccccccCcccccccccc
Q 039685 25 YKLLP-HHDFFCKRSLPLSISDTHYL 49 (111)
Q Consensus 25 ykL~~-h~effCKr~lp~sisdthYL 49 (111)
.+|.| .|.+.|||+++ +..|+
T Consensus 324 ~~l~P~~~~~~~kr~~~----~~~y~ 345 (542)
T 1w4x_A 324 ERLVPKGYPFGTKRLIL----EIDYY 345 (542)
T ss_dssp HHHSCCSSCSSSSCCEE----ESSHH
T ss_pred HhcCCCCCCccccCCCC----CccHH
Confidence 45778 79999999865 55676
No 4
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=26.37 E-value=15 Score=24.44 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=27.1
Q ss_pred CCCcchhHHhhcCCCCC-CCcccccc----HHHHHHhhcc
Q 039685 61 GEGMQLDQLIQNTSRDT-SARIQPFD----LDVLREAFQL 95 (111)
Q Consensus 61 geGmeLdQLiq~~~~~~-~~~iqpFd----l~vL~~aFqL 95 (111)
|.-|-|.||.+=+..+. ...||||| +...++|.+-
T Consensus 17 G~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~ 56 (84)
T 1wih_A 17 DGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRE 56 (84)
T ss_dssp TEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHT
T ss_pred CCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHH
Confidence 56788999987776544 46799999 8888888764
No 5
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=25.69 E-value=17 Score=25.30 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCccccccHHHHHHhhc
Q 039685 78 SARIQPFDLDVLREAFQ 94 (111)
Q Consensus 78 ~~~iqpFdl~vL~~aFq 94 (111)
.|-|||++++.+++|+.
T Consensus 10 ~AIIrp~kld~V~~AL~ 26 (114)
T 3m05_A 10 IAIVQDKDANYLSDQFI 26 (114)
T ss_dssp EEEEEHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHH
Confidence 36799999999999974
No 6
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=24.39 E-value=20 Score=29.01 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=16.4
Q ss_pred ccccc-ccccccccCccccccccccc
Q 039685 26 KLLPH-HDFFCKRSLPLSISDTHYLH 50 (111)
Q Consensus 26 kL~~h-~effCKr~lp~sisdthYL~ 50 (111)
+|.|. |.+.|||+++ +..|+.
T Consensus 330 ~l~P~~~~~~~kR~~~----~~~y~~ 351 (549)
T 4ap3_A 330 LLTPKDHAIGAKRIVL----DSGYYE 351 (549)
T ss_dssp HHSCSSCCBTTBCCEE----ESSTGG
T ss_pred hCCCCCCCCCccccCC----CccHHH
Confidence 47888 9999999987 455654
No 7
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=22.34 E-value=68 Score=21.78 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=22.5
Q ss_pred CcchhHHhhcCCCCCCCccccccHHHHHHhhccccCC
Q 039685 63 GMQLDQLIQNTSRDTSARIQPFDLDVLREAFQLRETS 99 (111)
Q Consensus 63 GmeLdQLiq~~~~~~~~~iqpFdl~vL~~aFqL~et~ 99 (111)
||++.++|.+-.|-.+-.=+|-+-++|++.++.--.+
T Consensus 1 ~M~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~a 37 (193)
T 3g14_A 1 GMEFYEVIKKRKSIKKFEQTAIDRDKLLKIIDMAMRA 37 (193)
T ss_dssp -CBHHHHHHHCCBCCCBCCCCCCHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHhCcchhcCCCCCCCHHHHHHHHHHHHHC
Confidence 6999999887653222223577777777776554333
No 8
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=22.15 E-value=22 Score=28.70 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=16.1
Q ss_pred cccc-cccccccccCccccccccccc
Q 039685 26 KLLP-HHDFFCKRSLPLSISDTHYLH 50 (111)
Q Consensus 26 kL~~-h~effCKr~lp~sisdthYL~ 50 (111)
+|.| .|.+.|||+++ +..|+.
T Consensus 325 ~l~P~~~~~g~kR~~~----~~~y~~ 346 (545)
T 3uox_A 325 KLIPKDHPFGAKRVPM----ETNYYE 346 (545)
T ss_dssp HTSCSSSCTTSSCCCE----ESSHHH
T ss_pred hCCCCCCCCCCCccCC----CccHHH
Confidence 5888 79999999987 445554
No 9
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=21.92 E-value=34 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=17.3
Q ss_pred CCccccccHHHHHHhhccccC
Q 039685 78 SARIQPFDLDVLREAFQLRET 98 (111)
Q Consensus 78 ~~~iqpFdl~vL~~aFqL~et 98 (111)
...+.-|+-++|.+||++.+.
T Consensus 142 ~s~~~gf~~evLa~af~v~~~ 162 (418)
T 3s7i_A 142 SSYLQGFSRNTLEAAFNAEFN 162 (418)
T ss_dssp CCGGGGSCHHHHHHHHTSCHH
T ss_pred hHHhhcCCHHHHHHHHCcCHH
Confidence 346778999999999998763
No 10
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=21.62 E-value=77 Score=21.33 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=21.9
Q ss_pred CcchhHHhhcCCCCCCCccccccHHHHHHhhcccc
Q 039685 63 GMQLDQLIQNTSRDTSARIQPFDLDVLREAFQLRE 97 (111)
Q Consensus 63 GmeLdQLiq~~~~~~~~~iqpFdl~vL~~aFqL~e 97 (111)
||++-++|.+-.|-.+-.=+|-+-++|++.++.--
T Consensus 1 ~M~~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~ 35 (219)
T 3eo8_A 1 GMELQDTIFKRQSVRKFKNQDVSDEDILKMIKAAG 35 (219)
T ss_dssp CCBHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHH
T ss_pred CCchHHHHHhCeehhccCCCCCCHHHHHHHHHHHH
Confidence 79999998876532222235667777777665433
Done!