Query 039689
Match_columns 763
No_of_seqs 416 out of 3489
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.2E-50 1.8E-54 476.0 35.1 552 1-754 355-945 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 7E-51 1.5E-55 458.1 19.8 296 1-299 321-650 (889)
3 PLN00113 leucine-rich repeat r 100.0 4.1E-35 8.9E-40 351.2 22.9 500 189-751 85-606 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-33 2.4E-38 338.9 26.6 507 168-751 51-583 (968)
5 PLN03210 Resistant to P. syrin 99.9 6.4E-25 1.4E-29 262.8 25.7 407 107-648 468-886 (1153)
6 KOG0472 Leucine-rich repeat pr 99.9 8.4E-28 1.8E-32 232.7 -10.3 448 189-727 60-539 (565)
7 KOG4194 Membrane glycoprotein 99.9 5.3E-25 1.2E-29 222.9 5.0 356 197-662 78-447 (873)
8 KOG0618 Serine/threonine phosp 99.9 1.5E-25 3.2E-30 239.2 -5.6 90 194-285 42-131 (1081)
9 KOG4194 Membrane glycoprotein 99.9 1.9E-23 4.2E-28 211.7 6.5 80 198-278 53-136 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 5.3E-26 1.1E-30 220.3 -13.1 460 197-750 45-539 (565)
11 KOG0444 Cytoskeletal regulator 99.9 4.6E-24 1E-28 217.5 -3.4 367 194-734 4-380 (1255)
12 KOG0618 Serine/threonine phosp 99.8 5E-23 1.1E-27 220.0 -7.3 450 189-751 13-488 (1081)
13 KOG0444 Cytoskeletal regulator 99.8 7.5E-22 1.6E-26 201.5 -5.7 341 189-621 24-378 (1255)
14 PF00931 NB-ARC: NB-ARC domain 99.7 4.8E-19 1E-23 181.5 2.2 122 1-123 161-285 (287)
15 KOG4237 Extracellular matrix p 99.6 6.7E-18 1.5E-22 164.3 -5.0 268 198-482 68-357 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 2.7E-15 5.8E-20 166.8 14.8 78 197-284 201-278 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 4.5E-15 9.7E-20 165.1 15.3 252 353-727 205-456 (788)
18 KOG4237 Extracellular matrix p 99.4 1.8E-14 4E-19 140.6 -3.0 260 184-460 78-356 (498)
19 KOG0617 Ras suppressor protein 99.4 1.8E-14 3.9E-19 124.3 -3.1 153 194-407 30-183 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 2.9E-12 6.2E-17 144.0 11.3 80 197-284 178-257 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 7.6E-12 1.7E-16 140.6 12.0 157 558-750 264-426 (754)
22 KOG0617 Ras suppressor protein 99.2 1.6E-13 3.4E-18 118.5 -5.3 104 189-293 48-153 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.2 4.8E-12 1E-16 144.5 4.4 86 193-278 567-653 (889)
24 KOG4341 F-box protein containi 98.9 3.6E-11 7.8E-16 119.0 -6.6 212 509-731 212-441 (483)
25 cd00116 LRR_RI Leucine-rich re 98.9 7.6E-10 1.7E-14 115.5 2.2 83 196-278 22-119 (319)
26 PF14580 LRR_9: Leucine-rich r 98.8 2.7E-09 5.9E-14 97.4 2.5 86 194-283 16-103 (175)
27 KOG4341 F-box protein containi 98.8 1E-10 2.2E-15 115.8 -7.7 276 398-709 139-443 (483)
28 PRK15386 type III secretion pr 98.7 5E-08 1.1E-12 100.0 10.1 160 558-754 54-215 (426)
29 PRK15386 type III secretion pr 98.6 1.1E-07 2.4E-12 97.4 9.7 134 581-749 51-187 (426)
30 PF13855 LRR_8: Leucine rich r 98.6 4.1E-08 8.8E-13 73.4 4.2 57 197-253 1-59 (61)
31 cd00116 LRR_RI Leucine-rich re 98.6 9.9E-09 2.1E-13 107.1 1.0 90 189-278 73-176 (319)
32 COG4886 Leucine-rich repeat (L 98.6 3.1E-08 6.7E-13 106.5 3.8 91 193-285 112-203 (394)
33 PF14580 LRR_9: Leucine-rich r 98.6 6.1E-08 1.3E-12 88.6 4.7 86 191-278 35-124 (175)
34 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.6E-13 96.7 -1.0 36 374-409 374-411 (490)
35 KOG0532 Leucine-rich repeat (L 98.5 7.1E-09 1.5E-13 106.9 -3.4 157 189-387 90-247 (722)
36 KOG3207 Beta-tubulin folding c 98.5 5.6E-08 1.2E-12 97.4 2.1 84 194-278 118-208 (505)
37 KOG3207 Beta-tubulin folding c 98.4 3E-08 6.6E-13 99.2 -0.6 161 448-646 119-285 (505)
38 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.8E-12 70.0 3.5 58 220-278 1-60 (61)
39 COG4886 Leucine-rich repeat (L 98.4 2.9E-07 6.3E-12 99.0 4.4 84 200-285 96-180 (394)
40 KOG1909 Ran GTPase-activating 98.3 1.9E-07 4.1E-12 91.1 1.7 90 189-278 22-131 (382)
41 PLN03150 hypothetical protein; 98.2 1.2E-06 2.6E-11 98.7 5.9 88 198-285 419-508 (623)
42 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 59.5 3.6 38 198-235 2-39 (44)
43 KOG0532 Leucine-rich repeat (L 98.2 1.8E-07 4E-12 96.8 -2.5 134 189-332 113-247 (722)
44 PLN03150 hypothetical protein; 98.1 2.3E-06 4.9E-11 96.5 5.5 93 189-281 434-529 (623)
45 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.3E-11 57.2 3.5 40 220-260 1-40 (44)
46 KOG2120 SCF ubiquitin ligase, 98.1 1.8E-07 3.8E-12 89.1 -4.3 86 220-331 185-272 (419)
47 KOG1259 Nischarin, modulator o 98.1 1E-06 2.2E-11 83.9 0.6 136 190-333 277-413 (490)
48 KOG2120 SCF ubiquitin ligase, 98.0 2.6E-07 5.7E-12 87.9 -4.5 135 581-726 209-348 (419)
49 KOG0531 Protein phosphatase 1, 97.9 2.8E-06 6E-11 91.5 -0.0 89 193-285 91-179 (414)
50 KOG0531 Protein phosphatase 1, 97.8 7.3E-06 1.6E-10 88.2 1.6 128 195-331 70-198 (414)
51 KOG4579 Leucine-rich repeat (L 97.7 7.2E-06 1.6E-10 69.1 0.2 83 195-278 51-134 (177)
52 KOG1859 Leucine-rich repeat pr 97.5 3.7E-06 8E-11 89.7 -5.5 85 191-278 181-265 (1096)
53 COG5238 RNA1 Ran GTPase-activa 97.3 4.4E-05 9.4E-10 72.2 -0.8 225 189-436 22-281 (388)
54 KOG2982 Uncharacterized conser 97.3 5.2E-05 1.1E-09 72.6 -0.5 84 194-278 68-157 (418)
55 KOG4579 Leucine-rich repeat (L 97.3 4.6E-05 9.9E-10 64.4 -0.8 86 197-284 27-116 (177)
56 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.2E-09 80.8 2.5 56 219-276 147-204 (699)
57 KOG1909 Ran GTPase-activating 97.1 2.9E-05 6.3E-10 76.2 -4.0 62 373-436 240-307 (382)
58 KOG1644 U2-associated snRNP A' 97.0 0.00097 2.1E-08 60.7 4.6 80 197-278 42-124 (233)
59 KOG1947 Leucine rich repeat pr 97.0 6.7E-05 1.4E-09 83.3 -3.7 84 558-641 245-331 (482)
60 KOG1947 Leucine rich repeat pr 96.9 0.00017 3.6E-09 80.2 -1.1 106 539-644 186-308 (482)
61 KOG1859 Leucine-rich repeat pr 96.9 6.9E-05 1.5E-09 80.4 -3.8 128 197-332 164-292 (1096)
62 KOG3665 ZYG-1-like serine/thre 96.7 0.001 2.3E-08 75.0 2.9 87 190-278 140-231 (699)
63 KOG1644 U2-associated snRNP A' 96.6 0.0022 4.8E-08 58.4 3.8 89 189-278 56-151 (233)
64 PF00560 LRR_1: Leucine Rich R 96.6 0.00092 2E-08 37.7 0.8 18 222-239 2-19 (22)
65 KOG2982 Uncharacterized conser 96.5 0.0029 6.2E-08 61.1 4.1 171 558-734 73-267 (418)
66 KOG0473 Leucine-rich repeat pr 95.9 0.00056 1.2E-08 63.4 -3.9 87 191-278 36-122 (326)
67 PF00560 LRR_1: Leucine Rich R 95.8 0.0042 9.2E-08 35.0 1.1 22 198-219 1-22 (22)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0054 1.2E-07 58.5 2.4 81 196-278 42-127 (260)
69 KOG2739 Leucine-rich acidic nu 95.8 0.0039 8.5E-08 59.4 1.3 68 216-285 39-108 (260)
70 KOG2123 Uncharacterized conser 95.7 0.0008 1.7E-08 64.1 -3.4 80 196-278 18-99 (388)
71 KOG2123 Uncharacterized conser 95.0 0.0031 6.7E-08 60.3 -2.0 79 194-273 38-123 (388)
72 PF13504 LRR_7: Leucine rich r 94.6 0.021 4.5E-07 29.7 1.3 14 222-235 3-16 (17)
73 PF13504 LRR_7: Leucine rich r 93.7 0.047 1E-06 28.4 1.5 17 197-213 1-17 (17)
74 smart00369 LRR_TYP Leucine-ric 91.5 0.15 3.2E-06 30.0 1.9 20 219-238 1-20 (26)
75 smart00370 LRR Leucine-rich re 91.5 0.15 3.2E-06 30.0 1.9 20 219-238 1-20 (26)
76 PRK04841 transcriptional regul 90.6 1.4 3.1E-05 53.2 11.0 124 24-170 206-332 (903)
77 PF13306 LRR_5: Leucine rich r 90.2 0.74 1.6E-05 40.1 6.0 54 581-639 11-66 (129)
78 KOG3864 Uncharacterized conser 90.2 0.043 9.3E-07 50.4 -1.9 45 602-646 122-166 (221)
79 PF13306 LRR_5: Leucine rich r 89.6 1.3 2.9E-05 38.4 7.3 81 192-276 7-90 (129)
80 KOG3864 Uncharacterized conser 89.3 0.12 2.6E-06 47.5 0.2 85 220-305 101-190 (221)
81 COG5238 RNA1 Ran GTPase-activa 88.0 0.47 1E-05 45.8 3.2 46 189-234 84-134 (388)
82 KOG0473 Leucine-rich repeat pr 86.9 0.061 1.3E-06 50.3 -3.2 83 209-293 30-114 (326)
83 smart00369 LRR_TYP Leucine-ric 85.5 0.58 1.3E-05 27.4 1.6 20 196-215 1-20 (26)
84 smart00370 LRR Leucine-rich re 85.5 0.58 1.3E-05 27.4 1.6 20 196-215 1-20 (26)
85 smart00367 LRR_CC Leucine-rich 79.2 1.2 2.5E-05 26.2 1.2 15 716-730 2-16 (26)
86 smart00364 LRR_BAC Leucine-ric 78.0 1.2 2.6E-05 26.0 0.9 17 221-237 3-19 (26)
87 PF13516 LRR_6: Leucine Rich r 75.8 2.2 4.7E-05 24.4 1.7 14 220-233 2-15 (24)
88 smart00365 LRR_SD22 Leucine-ri 75.5 2 4.4E-05 25.2 1.5 16 220-235 2-17 (26)
89 smart00368 LRR_RI Leucine rich 57.5 7.3 0.00016 23.3 1.4 14 220-233 2-15 (28)
90 KOG4062 6-O-methylguanine-DNA 38.6 46 0.001 29.5 3.9 38 3-50 95-132 (178)
91 PRK00080 ruvB Holliday junctio 38.4 31 0.00067 35.8 3.5 105 24-149 203-310 (328)
92 PF14050 Nudc_N: N-terminal co 34.8 68 0.0015 23.7 3.7 31 22-52 3-33 (62)
93 PF05725 FNIP: FNIP Repeat; I 33.5 50 0.0011 22.2 2.7 32 716-748 12-43 (44)
94 COG2909 MalT ATP-dependent tra 30.5 1.7E+02 0.0036 34.1 7.5 76 80-172 264-340 (894)
95 PF13730 HTH_36: Helix-turn-he 27.5 1.1E+02 0.0025 21.4 4.0 51 84-146 2-55 (55)
96 KOG3763 mRNA export factor TAP 25.6 32 0.0007 37.3 1.1 39 469-523 216-254 (585)
97 TIGR00635 ruvB Holliday juncti 24.4 2.3E+02 0.005 28.8 7.1 105 24-149 182-289 (305)
98 cd00923 Cyt_c_Oxidase_Va Cytoc 24.3 3E+02 0.0065 22.5 5.9 63 1-64 22-87 (103)
99 KOG3763 mRNA export factor TAP 22.7 54 0.0012 35.7 2.0 60 219-278 217-281 (585)
100 KOG4308 LRR-containing protein 21.2 4.1 8.8E-05 44.4 -6.7 160 199-360 146-331 (478)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.2e-50 Score=475.95 Aligned_cols=552 Identities=22% Similarity=0.296 Sum_probs=332.6
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccCCccChHHHHHH
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRV 80 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~ 80 (763)
+||+||+++||+.. .+++++++++++||++|+|+||||+++|+.|+++ +.++|+++++++.+.. +.+|.++|++
T Consensus 355 ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~ 428 (1153)
T PLN03210 355 LALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRV 428 (1153)
T ss_pred HHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHH
Confidence 59999999999764 3567899999999999999999999999999998 6899999999987543 3479999999
Q ss_pred HHhcCCH-hHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCcceec
Q 039689 81 SYHFLPP-QLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMH 159 (763)
Q Consensus 81 Sy~~L~~-~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mh 159 (763)
|||+|++ +.|.||+||||||.+..+ + .+..|.+.+.+.. ...++.|+++||++.. .++++||
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~--~-~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~---~~~~~MH 491 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKV--N-DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR---EDIVEMH 491 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCH--H-HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc---CCeEEhh
Confidence 9999987 599999999999998654 3 3556666654432 2238899999999875 3569999
Q ss_pred hhHHHHHHHHhcCceEEecCCC-----CCcchhhhhhccCCCCcccEEEecCCCCCc--c-CcccCCCCcccEEecCCCC
Q 039689 160 DLINDLTRWAAGETCFRMEDTP-----EGERRQNVLQRLLNLPRLRVFSLRGYNIFE--L-PKAIENLKHLRFLDLSTTK 231 (763)
Q Consensus 160 dli~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--l-p~~~~~l~~L~~L~L~~~~ 231 (763)
|++|+||++++.++.. ..+.. ..++.+ ++..-.+....+.+.+.-..+.. + +..|.+|.+|++|.+..+.
T Consensus 492 dLl~~~~r~i~~~~~~-~~~~r~~l~~~~di~~-vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 492 SLLQEMGKEIVRAQSN-EPGEREFLVDAKDICD-VLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hHHHHHHHHHHHhhcC-CCCcceeEeCHHHHHH-HHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 9999999999977641 11110 111111 22222334455555554444433 2 3678888999999886653
Q ss_pred c------h-hcchhhhhcc-cccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCCCceeeecCccc
Q 039689 232 I------E-ILRESINTLY-NLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLEN 303 (763)
Q Consensus 232 i------~-~lp~~~~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~ 303 (763)
. . .+|..+..++ +|+.|++.+ +.+..+|..+ ...+|++|++.++. +..++.
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~-~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~------------------ 628 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDK-YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWD------------------ 628 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecC-CCCCCCCCcC-CccCCcEEECcCcc-cccccc------------------
Confidence 2 1 4677776664 588888888 5778888776 46788888887765 332221
Q ss_pred ccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEec
Q 039689 304 VKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDN 383 (763)
Q Consensus 304 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~ 383 (763)
.+.. +++|+.|++++
T Consensus 629 ---------------------------------------------------------------~~~~--l~~Lk~L~Ls~ 643 (1153)
T PLN03210 629 ---------------------------------------------------------------GVHS--LTGLRNIDLRG 643 (1153)
T ss_pred ---------------------------------------------------------------cccc--CCCCCEEECCC
Confidence 1111 45566666666
Q ss_pred cCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCCcccEEEEecCcch
Q 039689 384 CGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQL 463 (763)
Q Consensus 384 ~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l 463 (763)
|..+..+|.++.+++|+.|++++|..+..++..+ ..+++|+.|++.+|..+
T Consensus 644 ~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-----------------------------~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-----------------------------QYLNKLEDLDMSRCENL 694 (1153)
T ss_pred CCCcCcCCccccCCcccEEEecCCCCccccchhh-----------------------------hccCCCCEEeCCCCCCc
Confidence 6555566666666666666666654443322111 11233333333333322
Q ss_pred hhcC--CCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCc--c
Q 039689 464 LVTL--QCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQ--D 539 (763)
Q Consensus 464 ~~~l--~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~--~ 539 (763)
.... ..+++|++|++++|..... ++ ...++|++|+++++.. + .+|. .
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~--~p-------------------~~~~nL~~L~L~~n~i-~-------~lP~~~~ 745 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKS--FP-------------------DISTNISWLDLDETAI-E-------EFPSNLR 745 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCccc--cc-------------------cccCCcCeeecCCCcc-c-------ccccccc
Confidence 2110 1355666666666642210 00 1134566666666542 1 2332 2
Q ss_pred ccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCC
Q 039689 540 IRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL 618 (763)
Q Consensus 540 l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l 618 (763)
+++|+.|.+.++.. ..+. +.+..++.. ....+++|+.|++++|+.+..+|. ++.+++|+.|++++|..+
T Consensus 746 l~~L~~L~l~~~~~-------~~l~--~~~~~l~~~-~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 746 LENLDELILCEMKS-------EKLW--ERVQPLTPL-MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccccccccccccch-------hhcc--ccccccchh-hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 33444444433211 0000 001111111 011134555555555555555543 344555555555555555
Q ss_pred CCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcC
Q 039689 619 ESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLT 695 (763)
Q Consensus 619 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~ 695 (763)
+.+|... .+++|+.|++++|..++.+|.. ..+|+.|++++ +.++.+|. .+++|+
T Consensus 816 ~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~------------------~~nL~~L~Ls~--n~i~~iP~si~~l~~L~ 872 (1153)
T PLN03210 816 ETLPTGI---NLESLESLDLSGCSRLRTFPDI------------------STNISDLNLSR--TGIEEVPWWIEKFSNLS 872 (1153)
T ss_pred CeeCCCC---CccccCEEECCCCCcccccccc------------------ccccCEeECCC--CCCccChHHHhcCCCCC
Confidence 5555432 3455555555555544443311 13455666654 45555554 567888
Q ss_pred eEeeccCCCCccccCCCCCCCCcCceecccCCCCccccCCCccc--------------ccceeeeccChhHHH
Q 039689 696 ELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPK--------------SLLRLIIDECPLIEK 754 (763)
Q Consensus 696 ~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~--------------~L~~L~i~~C~~l~~ 754 (763)
+|++++|++++.+|.....+++|+.+++++|++|+.++....+. +...+...+|.+|..
T Consensus 873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred EEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 88888888888888777788888888888888887665433221 223345667776653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7e-51 Score=458.09 Aligned_cols=296 Identities=33% Similarity=0.546 Sum_probs=243.4
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhccccc----CCccChHH
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLA----DDKCDIIP 76 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~----~~~~~i~~ 76 (763)
+||+||++.||.... ..++.+.++|++||++|+|+|||++|||+.|++|++.++|+++.+.+.+... .+.+.|++
T Consensus 321 eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred ccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 699999999987643 3345599999999999999999999999999999888999999998766522 23568999
Q ss_pred HHHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccccc--CCCC
Q 039689 77 ALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQST--YDAS 154 (763)
Q Consensus 77 ~l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~ 154 (763)
+|++|||+||++.|.||+|||+|||||+|+++.|+.||+|+||+.+....+.++|+|+.|+++|++++|+.... +...
T Consensus 400 iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 400 ILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 99999999999999999999999999999999999999999999997778999999999999999999999875 3457
Q ss_pred cceechhHHHHHHHHhc-----CceEEecCC----------CCCcchhh--------hhhccCCCCcccEEEecCCC--C
Q 039689 155 RFVMHDLINDLTRWAAG-----ETCFRMEDT----------PEGERRQN--------VLQRLLNLPRLRVFSLRGYN--I 209 (763)
Q Consensus 155 ~~~mhdli~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~--------~~~~~~~l~~Lr~L~L~~~~--i 209 (763)
+|+|||+||+||.|+++ .+...+.+. .....|+. ....-...+.|++|-+.+|. +
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l 559 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL 559 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhh
Confidence 89999999999999999 343333221 11122222 11111455689999999986 6
Q ss_pred CccC-cccCCCCcccEEecCCC-CchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCC
Q 039689 210 FELP-KAIENLKHLRFLDLSTT-KIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLK 287 (763)
Q Consensus 210 ~~lp-~~~~~l~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~ 287 (763)
..++ ..|..|+.|++|||++| .+..+|.+|+.|.+||+|++++ +.+..+|.++++|++|.+|++..+..+..++...
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchh
Confidence 6665 45888999999999987 5789999999999999999999 7899999999999999999999887666665533
Q ss_pred C-ccCCCceeeec
Q 039689 288 S-LVHLQGTLEIS 299 (763)
Q Consensus 288 ~-L~~L~~~L~~~ 299 (763)
. |.+|| .+.+.
T Consensus 639 ~~L~~Lr-~L~l~ 650 (889)
T KOG4658|consen 639 LELQSLR-VLRLP 650 (889)
T ss_pred hhccccc-EEEee
Confidence 3 56665 44443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-35 Score=351.25 Aligned_cols=500 Identities=17% Similarity=0.165 Sum_probs=293.1
Q ss_pred hhhccCCCCcccEEEecCCCCC-ccCccc-CCCCcccEEecCCCCch-hcchhhhhcccccEEeeccccccccccccccC
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIF-ELPKAI-ENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~ 265 (763)
.+..+..+++|++|+|++|++. .+|..+ ..+++|++|+|++|.++ .+|. +.+++|++|+|++|.....+|..+++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc
Confidence 4556677888888888888875 567554 47888888888888776 3443 56778888888886555567777888
Q ss_pred cccccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhh
Q 039689 266 LTKLHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVID 344 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 344 (763)
+++|++|++++|.....+|. +.++++|+ .|++.+.. .....+..+.++++|+.|++.+|...... ..
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------p~ 230 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLE-FLTLASNQ----LVGQIPRELGQMKSLKWIYLGYNNLSGEI-------PY 230 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCC-eeeccCCC----CcCcCChHHcCcCCccEEECcCCccCCcC-------Ch
Confidence 88888888888763334443 56666666 66665432 22233445667777777777666433221 11
Q ss_pred cCCCCCCc-eEEEeeeCCC-CCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCC
Q 039689 345 MLKPHQKL-ELTITGYGGT-KFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSS 421 (763)
Q Consensus 345 ~l~~l~~L-~L~~~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 421 (763)
.+..++.| .|++.++... .+|..+.. +++|+.|++++|...+.+| .+..+++|+.|++++|.....++..+
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---- 304 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV---- 304 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhC--CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH----
Confidence 22334444 4445444332 34555554 5667777776666555555 56666667777766654333322222
Q ss_pred cCCCCCCcceeeccccchhhhcCCCC---cCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccc-----cCCC
Q 039689 422 CSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVL-----SSPT 490 (763)
Q Consensus 422 ~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~-----~~~~ 490 (763)
..+++|+.|++.+ +.+.+..|. .+++|+.|++.+|.. ++..+..+++|+.|++++|..... ....
T Consensus 305 --~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 305 --IQLQNLEILHLFS--NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred --cCCCCCcEEECCC--CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 2256666666665 333333332 455666666666642 233445566666676666653321 1122
Q ss_pred ccccceeccccch-hhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCc
Q 039689 491 DLSSLKLVHSRDM-AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNAL 569 (763)
Q Consensus 491 ~L~~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l 569 (763)
.++.+.+.++... .....+..+++|+.|++++|.... .+|..+..+.. |+.|++++|...
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-------~~p~~~~~l~~------------L~~L~Ls~N~l~ 441 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-------ELPSEFTKLPL------------VYFLDISNNNLQ 441 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------ECChhHhcCCC------------CCEEECcCCccc
Confidence 3333333332221 111222344555555555554332 22322222111 566666665444
Q ss_pred ccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCcccccc
Q 039689 570 ESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIAR 649 (763)
Q Consensus 570 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 649 (763)
..++.... .+++|+.|++++|.....+|.....++|+.|++++|...+.+|..+ ..+++|+.|++++|.....+|.
T Consensus 442 ~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 442 GRINSRKW--DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred CccChhhc--cCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh--hhhhccCEEECcCCcceeeCCh
Confidence 44444322 3788888888888776677765556788888888887666777666 6788888888888733333332
Q ss_pred ccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccC
Q 039689 650 IQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNC 726 (763)
Q Consensus 650 ~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c 726 (763)
. + . .+.+|+.|++++ +.-...+|. .+++|++|++++|.....+|..+..+++|++|++++|
T Consensus 518 ~-~----~----------~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 518 E-L----S----------SCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred H-H----c----------CccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 1 1 0 234566666665 222223333 4678999999997777788888888899999999998
Q ss_pred CCCccccCCCcccccceeeeccChh
Q 039689 727 PKLKYFSKQGLPKSLLRLIIDECPL 751 (763)
Q Consensus 727 ~~L~~l~~~~~~~~L~~L~i~~C~~ 751 (763)
+-...+|..+...++....+.++|.
T Consensus 582 ~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 582 HLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred cceeeCCCcchhcccChhhhcCCcc
Confidence 7777777655444444444455543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-33 Score=338.91 Aligned_cols=507 Identities=19% Similarity=0.169 Sum_probs=323.8
Q ss_pred HHhcCceEEecCCCCCcchhhhhhccCCCCcccEEEecCCCCCc-cCcccCCCCcccEEecCCCCch-hcchhhh-hccc
Q 039689 168 WAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFE-LPKAIENLKHLRFLDLSTTKIE-ILRESIN-TLYN 244 (763)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~-~L~~ 244 (763)
|....+|+.|.+..+. ...+++.|++++|.+.. +|..|..+++|++|+|++|.+. .+|..+. .+.+
T Consensus 51 w~~~~~~c~w~gv~c~-----------~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~ 119 (968)
T PLN00113 51 WNSSADVCLWQGITCN-----------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119 (968)
T ss_pred CCCCCCCCcCcceecC-----------CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCC
Confidence 4344556666665443 23478999999999775 4788999999999999999997 7888775 9999
Q ss_pred ccEEeeccccccccccccccCcccccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccc
Q 039689 245 LHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKA 323 (763)
Q Consensus 245 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 323 (763)
|++|+|++|+....+|. +.+++|++|++++|.....+|. ++++++|+ .|++.+.. .....+..+.++++|+.
T Consensus 120 L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK-VLDLGGNV----LVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC-EEECccCc----ccccCChhhhhCcCCCe
Confidence 99999999766666765 5789999999999983334554 77788888 77776532 22233446778888888
Q ss_pred eEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCC-CCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCC
Q 039689 324 LYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGT-KFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLK 400 (763)
Q Consensus 324 L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~ 400 (763)
|++++|...... ...+..++.| .|.+.++... .+|.+++. +++|++|++++|...+.+| .++.+++|+
T Consensus 193 L~L~~n~l~~~~-------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 193 LTLASNQLVGQI-------PRELGQMKSLKWIYLGYNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred eeccCCCCcCcC-------ChHHcCcCCccEEECcCCccCCcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCC
Confidence 888777543221 1233344455 5555544433 35555554 6677777777766555555 566677777
Q ss_pred cceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCC---cCCcccEEEEecCcc---hhhcCCCCCccc
Q 039689 401 DPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCEQ---LLVTLQCLPALR 474 (763)
Q Consensus 401 ~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~~l~~l~~L~ 474 (763)
+|++++|.....++..+ ..+++|++|++.+ +.+.+.+|. .+++|+.|++.+|.. .+..+..+++|+
T Consensus 264 ~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSI------FSLQKLISLDLSD--NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred EEECcCCeeeccCchhH------hhccCcCEEECcC--CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 77776654433332222 2256666666665 334444442 345566666665542 223344566666
Q ss_pred EEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCch
Q 039689 475 ELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQL 554 (763)
Q Consensus 475 ~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l 554 (763)
.|++++|.... ..+..+..+++|+.|++++|.... .+|..+..+..
T Consensus 336 ~L~L~~n~l~~------------------~~p~~l~~~~~L~~L~Ls~n~l~~-------~~p~~~~~~~~--------- 381 (968)
T PLN00113 336 VLQLWSNKFSG------------------EIPKNLGKHNNLTVLDLSTNNLTG-------EIPEGLCSSGN--------- 381 (968)
T ss_pred EEECcCCCCcC------------------cCChHHhCCCCCcEEECCCCeeEe-------eCChhHhCcCC---------
Confidence 66666654321 011122445667777777665443 33332222111
Q ss_pred hhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCc
Q 039689 555 ISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSL 633 (763)
Q Consensus 555 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 633 (763)
|+.|++++|+..+.+|..+. .+++|+.|++++|+....+|. +..+++|+.|++++|...+.++..+ ..+++|
T Consensus 382 ---L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L 454 (968)
T PLN00113 382 ---LFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSL 454 (968)
T ss_pred ---CCEEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCC
Confidence 45555555444445555432 267777777777665445554 4566777777777776555555554 567777
Q ss_pred ceEeeccCCCccccccccCCCCCcEEEEecCCCC--------CCCccceEEecCCCCCccccCC---CCCCcCeEeeccC
Q 039689 634 ESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNL--------RFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDM 702 (763)
Q Consensus 634 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l--------~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~ 702 (763)
+.|++++|.....+|.....++|+.|++++|... .+++|+.|++++ +.-...+|. .+++|++|++++|
T Consensus 455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE-NKLSGEIPDELSSCKKLVSLDLSHN 533 (968)
T ss_pred cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC-CcceeeCChHHcCccCCCEEECCCC
Confidence 7777777754444444333456777777766532 456788899987 433334554 5689999999998
Q ss_pred CCCccccCCCCCCCCcCceecccCCCCccccCC-CcccccceeeeccChh
Q 039689 703 PSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQ-GLPKSLLRLIIDECPL 751 (763)
Q Consensus 703 ~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~~~L~~L~i~~C~~ 751 (763)
.....+|..+..+++|++|++++|.-...+|.. ...++|+.|++++|+-
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 777788888899999999999998766677762 3347899999999973
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=6.4e-25 Score=262.80 Aligned_cols=407 Identities=21% Similarity=0.295 Sum_probs=238.7
Q ss_pred HHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCcceechhHHHHHHHHhcCce-EEecCCC-CCc
Q 039689 107 KEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETC-FRMEDTP-EGE 184 (763)
Q Consensus 107 ~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mhdli~~~~~~~~~~~~-~~~~~~~-~~~ 184 (763)
.+.-++..+...++........|+|..+++-.+.+..--- ..+.....+.+.-+.++.....+.+. ..+.-.. ...
T Consensus 468 ~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~--~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 468 VNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSN--EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred chhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcC--CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 3344667778888876555567777666666666543221 11222334434334443332222111 1110000 001
Q ss_pred chhhhhhccCCCCcccEEEecCCCC-------CccCcccCCCC-cccEEecCCCCchhcchhhhhcccccEEeecccccc
Q 039689 185 RRQNVLQRLLNLPRLRVFSLRGYNI-------FELPKAIENLK-HLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL 256 (763)
Q Consensus 185 ~~~~~~~~~~~l~~Lr~L~L~~~~i-------~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l 256 (763)
..+.....|.++++|+.|.+..+.. ..+|..|..++ +||+|++.++.++.+|..| .+.+|+.|++++ +.+
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~-s~l 623 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG-SKL 623 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC-ccc
Confidence 1122345678899999999976532 23677777764 6999999999999999888 579999999999 579
Q ss_pred ccccccccCcccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCC
Q 039689 257 KKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEP 336 (763)
Q Consensus 257 ~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 336 (763)
..+|.++..+++|+.|+++++..+..+|.+..+++|+ .|.+.++..
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le-~L~L~~c~~--------------------------------- 669 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE-TLKLSDCSS--------------------------------- 669 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCccccCCccc-EEEecCCCC---------------------------------
Confidence 9999999999999999999987566666544444444 333322111
Q ss_pred ccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCcc
Q 039689 337 KTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSE 416 (763)
Q Consensus 337 ~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~ 416 (763)
...+|..+.. +++|+.|++++|..++.+|....+++|+.|++++|..+..
T Consensus 670 ------------------------L~~lp~si~~--L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~---- 719 (1153)
T PLN03210 670 ------------------------LVELPSSIQY--LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKS---- 719 (1153)
T ss_pred ------------------------ccccchhhhc--cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc----
Confidence 1223444444 6777777777777777776544666677776666543322
Q ss_pred ccCCCcCCCCCCcceeeccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccCCCcccc
Q 039689 417 FYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSSPTDLSS 494 (763)
Q Consensus 417 ~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~ 494 (763)
+|...++|+.|++.++. .++..+ .+++|++|.+.++....+.. .+..
T Consensus 720 ----------------------------~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~--~~~~ 768 (1153)
T PLN03210 720 ----------------------------FPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWE--RVQP 768 (1153)
T ss_pred ----------------------------cccccCCcCeeecCCCccccccccc-cccccccccccccchhhccc--cccc
Confidence 22223344444444443 111111 35666666666543211100 0000
Q ss_pred ceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccc
Q 039689 495 LKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPE 574 (763)
Q Consensus 495 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~ 574 (763)
........+++|++|++++|..+. .+|..+.++.. |+.|++++|+.++.+|.
T Consensus 769 ---------l~~~~~~~~~sL~~L~Ls~n~~l~-------~lP~si~~L~~------------L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 769 ---------LTPLMTMLSPSLTRLFLSDIPSLV-------ELPSSIQNLHK------------LEHLEIENCINLETLPT 820 (1153)
T ss_pred ---------cchhhhhccccchheeCCCCCCcc-------ccChhhhCCCC------------CCEEECCCCCCcCeeCC
Confidence 000111235677777777776655 45544443332 56666666666777776
Q ss_pred hhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccc
Q 039689 575 AWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIA 648 (763)
Q Consensus 575 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 648 (763)
.+ .+++|+.|++++|..+..+|. .+++|+.|++++| .++.+|..+ ..+++|+.|++++|++++.++
T Consensus 821 ~~---~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n-~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 821 GI---NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT-GIEEVPWWI--EKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CC---CccccCEEECCCCCccccccc--cccccCEeECCCC-CCccChHHH--hcCCCCCEEECCCCCCcCccC
Confidence 53 367777777777777776664 3457777777776 556677666 667777777777776666554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=8.4e-28 Score=232.66 Aligned_cols=448 Identities=23% Similarity=0.308 Sum_probs=265.5
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK 268 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 268 (763)
+.+++.++..+.+|++.+|++..+|.+++.+..++.|+.++|.++.+|+.++.+.+|+.|+.++ +.+.++|++++.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhh
Confidence 3456678889999999999999999999999999999999999999999999999999999999 688999999999999
Q ss_pred ccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689 269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK 347 (763)
Q Consensus 269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 347 (763)
|+.|+..+|. +..+|. +.++..+. ++.+.+ +......+ ..-.++.|++|+.
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~-~l~~~~----n~l~~l~~-~~i~m~~L~~ld~--------------------- 190 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLS-KLDLEG----NKLKALPE-NHIAMKRLKHLDC--------------------- 190 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHH-Hhhccc----cchhhCCH-HHHHHHHHHhccc---------------------
Confidence 9999998887 666654 33333222 111111 11111111 2222555555544
Q ss_pred CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689 348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP 427 (763)
Q Consensus 348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~ 427 (763)
..+....+|+.++. +.+|..|++..|+ +..+|.|+....|+++.++. +.++.++.+.. ..++
T Consensus 191 ---------~~N~L~tlP~~lg~--l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~-----~~L~ 252 (565)
T KOG0472|consen 191 ---------NSNLLETLPPELGG--LESLELLYLRRNK-IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL-----KHLN 252 (565)
T ss_pred ---------chhhhhcCChhhcc--hhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcc-cHHHhhHHHHh-----cccc
Confidence 33445567777776 7888888888884 55678888888888888876 34554444332 2377
Q ss_pred CcceeeccccchhhhcCCCC---cCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCccccc----CC---Cccccc
Q 039689 428 SLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLS----SP---TDLSSL 495 (763)
Q Consensus 428 ~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~----~~---~~L~~L 495 (763)
++..|++.+ +++. ..|+ -+.+|++|+++++. .++..++++ .|+.|-+.||+..... .. .-+++|
T Consensus 253 ~l~vLDLRd--Nklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 253 SLLVLDLRD--NKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred cceeeeccc--cccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 888888887 5555 5564 35678888888875 566677888 8999999999754421 00 001111
Q ss_pred ee-ccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC--ccccccCceeeccC-----Cch------hhhccee
Q 039689 496 KL-VHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP--QDIRSLNRLQISRC-----PQL------ISLLRTV 561 (763)
Q Consensus 496 ~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p--~~l~~L~~L~l~~~-----~~l------~~~L~~L 561 (763)
.- ..+... .+ +.-............+| ..+-+.+.|++++- |.- ..+.+..
T Consensus 329 rs~~~~dgl---------S~------se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~V 393 (565)
T KOG0472|consen 329 RSKIKDDGL---------SQ------SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSV 393 (565)
T ss_pred HHhhccCCC---------CC------CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEE
Confidence 00 000000 00 00000000000000111 11122333333321 000 0013444
Q ss_pred eeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeecc
Q 039689 562 KIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDS 640 (763)
Q Consensus 562 ~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 640 (763)
+++. |.+..+|..+.. +..+...-+.+++.+..+|. +..+++|..|++++| .+..+|..+ ..+..|+.|+++.
T Consensus 394 nfsk-NqL~elPk~L~~--lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 394 NFSK-NQLCELPKRLVE--LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSF 467 (565)
T ss_pred eccc-chHhhhhhhhHH--HHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhh--hhhhhhheecccc
Confidence 4444 556666655322 22232222223344343333 455667777777776 567777766 5666677777776
Q ss_pred CCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCCCCCC
Q 039689 641 CDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIGENLT 716 (763)
Q Consensus 641 c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~~~l~ 716 (763)
| +.+.+|..... ...++.+-.++ +.+..++. .+.+|.+|++.+ +.+..||..+++++
T Consensus 468 N-rFr~lP~~~y~---------------lq~lEtllas~--nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 468 N-RFRMLPECLYE---------------LQTLETLLASN--NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMT 528 (565)
T ss_pred c-ccccchHHHhh---------------HHHHHHHHhcc--ccccccChHHhhhhhhcceeccCC-CchhhCChhhcccc
Confidence 6 55555543221 11122222221 23333333 456788888887 78888888888888
Q ss_pred CcCceecccCC
Q 039689 717 SLKFLDLDNCP 727 (763)
Q Consensus 717 ~L~~L~l~~c~ 727 (763)
+|++|++.++|
T Consensus 529 nL~hLeL~gNp 539 (565)
T KOG0472|consen 529 NLRHLELDGNP 539 (565)
T ss_pred ceeEEEecCCc
Confidence 88888888875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.3e-25 Score=222.88 Aligned_cols=356 Identities=23% Similarity=0.257 Sum_probs=233.6
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc-cccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 274 (763)
..-++||+++|.+..+ +..|.++++|+.+++.+|.++.+|...+...+|+.|+|.+ +.+..+.. +++.++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhh
Confidence 3457799999998887 5778899999999999999999998888888899999998 57776654 4888889999999
Q ss_pred CCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceE
Q 039689 275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLEL 354 (763)
Q Consensus 275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L 354 (763)
+.|. +.+++. ..+....++++|+++.|.++..... .+..
T Consensus 157 SrN~-is~i~~---------------------------~sfp~~~ni~~L~La~N~It~l~~~-------~F~~------ 195 (873)
T KOG4194|consen 157 SRNL-ISEIPK---------------------------PSFPAKVNIKKLNLASNRITTLETG-------HFDS------ 195 (873)
T ss_pred hhch-hhcccC---------------------------CCCCCCCCceEEeeccccccccccc-------cccc------
Confidence 8886 544432 2344556788888877754443221 1111
Q ss_pred EEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689 355 TITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL 432 (763)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L 432 (763)
+.+|..|.|+.|. +..+| .|..+|.|+.|++..+..-...+..|.| +++|+.|
T Consensus 196 ------------------lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg------L~Sl~nl 250 (873)
T KOG4194|consen 196 ------------------LNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG------LPSLQNL 250 (873)
T ss_pred ------------------cchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcC------chhhhhh
Confidence 4556666666653 33444 4556666777766664322222444433 6666666
Q ss_pred ecccc-chhhhcCCCCcCCcccEEEEecCcch---hhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhh
Q 039689 433 FFVDI-CSKLQGTLPERLLLLEKLNIFRCEQL---LVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVF 508 (763)
Q Consensus 433 ~l~~~-~~~l~~~~~~~~~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 508 (763)
.+..+ ..++..-..-.+.++++|++..+.-. ...+-++++|+.|+++.|....+.. ..
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------------d~ 312 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------------DS 312 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec------------------ch
Confidence 66542 11222222334566666666665422 2245678888888888886544221 11
Q ss_pred cCCCCCCceEEEeccCCccccccccCcCC-ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689 509 EQGLPKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL 587 (763)
Q Consensus 509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 587 (763)
....++|++|++++|.... ++ +++.-|.. |++|.+++ |.+..+.+..+. .+++|++|
T Consensus 313 WsftqkL~~LdLs~N~i~~--------l~~~sf~~L~~------------Le~LnLs~-Nsi~~l~e~af~-~lssL~~L 370 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITR--------LDEGSFRVLSQ------------LEELNLSH-NSIDHLAEGAFV-GLSSLHKL 370 (873)
T ss_pred hhhcccceeEecccccccc--------CChhHHHHHHH------------hhhhcccc-cchHHHHhhHHH-Hhhhhhhh
Confidence 2557889999999987543 22 22222111 45555555 778888777444 48999999
Q ss_pred EEecCccccccCC----CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC-CCCCcEEEEe
Q 039689 588 KIRSCNSLVSFPD----FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL-PPSLKRLIIF 662 (763)
Q Consensus 588 ~l~~c~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~ 662 (763)
++++|.....+.+ +..+++|+.|++.+| +++.+|...+ .++++|++|++.+| -+.++...+| +-.|++|.+.
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 9988764333332 566899999999998 7888887655 89999999999988 6667766666 3466666543
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-25 Score=239.17 Aligned_cols=90 Identities=28% Similarity=0.346 Sum_probs=82.7
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
.+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+ +.+..+|.++..+++|+.|+
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccc
Confidence 34455999999999999999999999999999999999999999999999999999998 79999999999999999999
Q ss_pred cCCccccccccc
Q 039689 274 NSNVGSLEEMLM 285 (763)
Q Consensus 274 l~~~~~l~~l~~ 285 (763)
+++|. +..+|.
T Consensus 121 lS~N~-f~~~Pl 131 (1081)
T KOG0618|consen 121 LSFNH-FGPIPL 131 (1081)
T ss_pred cchhc-cCCCch
Confidence 99998 655554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-23 Score=211.65 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=63.4
Q ss_pred cccEEEecCCCCCccC-cccCCC--CcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 198 RLRVFSLRGYNIFELP-KAIENL--KHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp-~~~~~l--~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
.-+.||.+++.+..+. ..+.+. ..-+.||+++|.+..+ +..|.++++|+.+++.+ +.+..+|...+...+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEe
Confidence 3467788888876652 222222 3456799999999987 77889999999999999 79999999777778899999
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
|.+|.
T Consensus 132 L~~N~ 136 (873)
T KOG4194|consen 132 LRHNL 136 (873)
T ss_pred eeccc
Confidence 99886
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=5.3e-26 Score=220.25 Aligned_cols=460 Identities=19% Similarity=0.209 Sum_probs=270.7
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 276 (763)
..+..|++++|.+..+.+.+.++..|.+|++.+|.+.++|++++.+..++.|+.++ +++.++|++++++.+|++|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc
Confidence 45677899999999998889999999999999999999999999999999999999 79999999999999999999999
Q ss_pred ccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEE
Q 039689 277 VGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELT 355 (763)
Q Consensus 277 ~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~ 355 (763)
+. +.+++. ++.+-.+. .+. ..++.....+..+.++.++..+ .
T Consensus 124 n~-~~el~~~i~~~~~l~-dl~-----~~~N~i~slp~~~~~~~~l~~l------------------------------~ 166 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLE-DLD-----ATNNQISSLPEDMVNLSKLSKL------------------------------D 166 (565)
T ss_pred cc-eeecCchHHHHhhhh-hhh-----ccccccccCchHHHHHHHHHHh------------------------------h
Confidence 98 555443 33332222 111 1111111122222233333333 3
Q ss_pred EeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeec
Q 039689 356 ITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFF 434 (763)
Q Consensus 356 ~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l 434 (763)
+.++..+.+|+..-. +..|++|+...|. ++.+| .++.+.+|..|++.+++... .+ +|.| +..|++|+.
T Consensus 167 ~~~n~l~~l~~~~i~--m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~g------cs~L~Elh~ 235 (565)
T KOG0472|consen 167 LEGNKLKALPENHIA--MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF-LP-EFPG------CSLLKELHV 235 (565)
T ss_pred ccccchhhCCHHHHH--HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc-CC-CCCc------cHHHHHHHh
Confidence 334445555554433 6777777776663 55555 78888888888888754322 22 3322 445555555
Q ss_pred cccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCccccc----CCCccccceeccccchhhhhhcC
Q 039689 435 VDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLS----SPTDLSSLKLVHSRDMAKEVFEQ 510 (763)
Q Consensus 435 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~----~~~~L~~L~~~~~~~~~~~~~~~ 510 (763)
.. +.+. .+| ......++++..|++..|+....+ ...++..|++++......+...+
T Consensus 236 g~--N~i~-~lp-----------------ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 236 GE--NQIE-MLP-----------------AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred cc--cHHH-hhH-----------------HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccc
Confidence 54 1111 111 112346889999999999876654 23334444444333332222234
Q ss_pred CCCCCceEEEeccCCcccccccc-CcCCccccccCceeec-cCC------------------ch--hhhcceeeeccCCC
Q 039689 511 GLPKLERLEIQHVREQTYLWRSE-TRLPQDIRSLNRLQIS-RCP------------------QL--ISLLRTVKIEDCNA 568 (763)
Q Consensus 511 ~~~~L~~L~l~~~~~l~~l~~~~-~~~p~~l~~L~~L~l~-~~~------------------~l--~~~L~~L~l~~~~~ 568 (763)
.+ .|+.|.+.+|+.-+.--... +.....+..|++=..+ +.+ .. ....+.|.+++ ..
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~q 373 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQ 373 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cc
Confidence 44 55555555554322100000 0000000111100000 000 00 00055555555 55
Q ss_pred cccccchhhhcC-CCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689 569 LESLPEAWMHNS-NSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY 646 (763)
Q Consensus 569 l~~l~~~~~~~~-l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 646 (763)
++.+|...+... -.-...++++.|. +.++|. ...+..+.+.-+.++..+..+|..+ ..+++|..|++++| -+.+
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt~L~L~NN-~Ln~ 449 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLTFLDLSNN-LLND 449 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcceeeecccc-hhhh
Confidence 555665533210 1124455555533 444443 2222223222222333566666655 67788888888876 5566
Q ss_pred cccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCC---CCcCeEeeccCCCCccccCC-CCCCCCcCcee
Q 039689 647 IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFP---ASLTELKISDMPSLERLSSI-GENLTSLKFLD 722 (763)
Q Consensus 647 l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~ 722 (763)
+|.... .+..||.++++. +++..+|.+. ..|+.+- .+.+.++.++.. +.++.+|.+||
T Consensus 450 LP~e~~---------------~lv~Lq~LnlS~--NrFr~lP~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 450 LPEEMG---------------SLVRLQTLNLSF--NRFRMLPECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred cchhhh---------------hhhhhheecccc--cccccchHHHhhHHHHHHHH-hccccccccChHHhhhhhhcceec
Confidence 664432 345678888875 6777777733 3444444 444899999876 69999999999
Q ss_pred cccCCCCccccC-CCcccccceeeeccCh
Q 039689 723 LDNCPKLKYFSK-QGLPKSLLRLIIDECP 750 (763)
Q Consensus 723 l~~c~~L~~l~~-~~~~~~L~~L~i~~C~ 750 (763)
+.+ +.++.+|+ .+..++|+.|.++|+|
T Consensus 512 L~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 512 LQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cCC-CchhhCChhhccccceeEEEecCCc
Confidence 988 57888887 5777999999999997
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=4.6e-24 Score=217.47 Aligned_cols=367 Identities=20% Similarity=0.290 Sum_probs=218.6
Q ss_pred CCCCcccEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 194 LNLPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
+-++..|-.|+++|.++ .+|.+...|+.++.|.|..+.+..+|+.++.+.+|++|.+++ +.+..+..+++.|+.||.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRS 82 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHH
Confidence 45778888999999976 479999999999999999999999999999999999999999 678888788889999999
Q ss_pred cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689 272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351 (763)
Q Consensus 272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 351 (763)
+.+..|. +..
T Consensus 83 v~~R~N~-LKn--------------------------------------------------------------------- 92 (1255)
T KOG0444|consen 83 VIVRDNN-LKN--------------------------------------------------------------------- 92 (1255)
T ss_pred Hhhhccc-ccc---------------------------------------------------------------------
Confidence 9888876 211
Q ss_pred ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcc
Q 039689 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLE 430 (763)
Q Consensus 352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~ 430 (763)
..+|+.+.. +..|+.|+|++|.. ...| .+....++..|+++++. ++.++...+ ..+..|-
T Consensus 93 ----------sGiP~diF~--l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-----inLtDLL 153 (1255)
T KOG0444|consen 93 ----------SGIPTDIFR--LKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-----INLTDLL 153 (1255)
T ss_pred ----------CCCCchhcc--cccceeeecchhhh-hhcchhhhhhcCcEEEEcccCc-cccCCchHH-----HhhHhHh
Confidence 012222222 34444455554432 2222 34444444455555422 222221110 0011122
Q ss_pred eeeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcC
Q 039689 431 TLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQ 510 (763)
Q Consensus 431 ~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 510 (763)
.|++++ +.+. .+| ..+..+.+|++|.+++|+...+. -....
T Consensus 154 fLDLS~--NrLe-~LP------------------PQ~RRL~~LqtL~Ls~NPL~hfQ------------------LrQLP 194 (1255)
T KOG0444|consen 154 FLDLSN--NRLE-MLP------------------PQIRRLSMLQTLKLSNNPLNHFQ------------------LRQLP 194 (1255)
T ss_pred hhcccc--chhh-hcC------------------HHHHHHhhhhhhhcCCChhhHHH------------------HhcCc
Confidence 222222 2222 111 12334555666666666533211 00012
Q ss_pred CCCCCceEEEeccCCccccccccCcCC---ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689 511 GLPKLERLEIQHVREQTYLWRSETRLP---QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL 587 (763)
Q Consensus 511 ~~~~L~~L~l~~~~~l~~l~~~~~~~p---~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 587 (763)
.+++|+.|.+++..... ..+| ..+.+|..+++ +. |.+..+|++... +++|+.|
T Consensus 195 smtsL~vLhms~TqRTl------~N~Ptsld~l~NL~dvDl---------------S~-N~Lp~vPecly~--l~~LrrL 250 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTL------DNIPTSLDDLHNLRDVDL---------------SE-NNLPIVPECLYK--LRNLRRL 250 (1255)
T ss_pred cchhhhhhhcccccchh------hcCCCchhhhhhhhhccc---------------cc-cCCCcchHHHhh--hhhhhee
Confidence 23344444444433211 1334 23334444444 43 778888888655 8899999
Q ss_pred EEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCC
Q 039689 588 KIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDN 666 (763)
Q Consensus 588 ~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 666 (763)
++++|. ++.+.. ...-.+|++|+++.| .++.+|..+ ..++.|+.|.+.+| +++ ...+|+-+-
T Consensus 251 NLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~av--cKL~kL~kLy~n~N-kL~---FeGiPSGIG--------- 313 (1255)
T KOG0444|consen 251 NLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAV--CKLTKLTKLYANNN-KLT---FEGIPSGIG--------- 313 (1255)
T ss_pred ccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHH--hhhHHHHHHHhccC-ccc---ccCCccchh---------
Confidence 998855 455443 233468899999997 788899888 78899999988877 332 223333222
Q ss_pred CCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccC
Q 039689 667 LRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSK 734 (763)
Q Consensus 667 l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~ 734 (763)
++.+|+.+...+ +.++-.|+ .+..|+.|.+++ +.+-.+|..+.-++.|+.||+..+|+|.--|.
T Consensus 314 -KL~~Levf~aan--N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 314 -KLIQLEVFHAAN--NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred -hhhhhHHHHhhc--cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 234555555543 55555555 345677777766 66777777777777777777777777664443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=5e-23 Score=220.02 Aligned_cols=450 Identities=24% Similarity=0.247 Sum_probs=267.4
Q ss_pred hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLT 267 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 267 (763)
+|..+.....+..|++..|.+-..| +.+.+..+|+.||+++|.+...|..+..+.+|+.|+++. +.++.+|.+++++.
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMR 91 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhh
Confidence 4455544455888888888877766 444566679999999999999999999999999999998 78999999999999
Q ss_pred cccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689 268 KLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK 347 (763)
Q Consensus 268 ~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 347 (763)
+|++|.|.+|. ++.+| +.+..+.+|+.|++++|..
T Consensus 92 ~l~~lnL~~n~-l~~lP----------------------------~~~~~lknl~~LdlS~N~f---------------- 126 (1081)
T KOG0618|consen 92 NLQYLNLKNNR-LQSLP----------------------------ASISELKNLQYLDLSFNHF---------------- 126 (1081)
T ss_pred cchhheeccch-hhcCc----------------------------hhHHhhhcccccccchhcc----------------
Confidence 99999999887 55444 3444455666666655522
Q ss_pred CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689 348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP 427 (763)
Q Consensus 348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~ 427 (763)
..+|..+.. +..++.+..++|.....++ ... ++.+++..+.....+..+ ..
T Consensus 127 --------------~~~Pl~i~~--lt~~~~~~~s~N~~~~~lg---~~~-ik~~~l~~n~l~~~~~~~---------i~ 177 (1081)
T KOG0618|consen 127 --------------GPIPLVIEV--LTAEEELAASNNEKIQRLG---QTS-IKKLDLRLNVLGGSFLID---------IY 177 (1081)
T ss_pred --------------CCCchhHHh--hhHHHHHhhhcchhhhhhc---ccc-chhhhhhhhhcccchhcc---------hh
Confidence 223332222 3344444444442222222 111 333333332221111111 12
Q ss_pred Ccce-eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccc---cCCCccccceeccccch
Q 039689 428 SLET-LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVL---SSPTDLSSLKLVHSRDM 503 (763)
Q Consensus 428 ~L~~-L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~---~~~~~L~~L~~~~~~~~ 503 (763)
+++. |++.++ .+....-..+++|+.|....+. +...--.-++|+.|+.++|..... +.+.+++.+.++.....
T Consensus 178 ~l~~~ldLr~N--~~~~~dls~~~~l~~l~c~rn~-ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 178 NLTHQLDLRYN--EMEVLDLSNLANLEVLHCERNQ-LSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred hhheeeecccc--hhhhhhhhhccchhhhhhhhcc-cceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh
Confidence 2332 455442 1111111123333333333222 222223456777888877766542 23444555544444333
Q ss_pred hhhhhcCCCCCCceEEEeccCCccccccccCcCCccc---cccCceeeccCCchhhhcceeeeccCCCcccccchhhhcC
Q 039689 504 AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDI---RSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNS 580 (763)
Q Consensus 504 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l---~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~ 580 (763)
..+.+...+++|+.+.+.+|... .+|..+ ++|+.|.+.. +.++.+|+... .
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~--------~lp~ri~~~~~L~~l~~~~----------------nel~yip~~le--~ 308 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLV--------ALPLRISRITSLVSLSAAY----------------NELEYIPPFLE--G 308 (1081)
T ss_pred cchHHHHhcccceEecccchhHH--------hhHHHHhhhhhHHHHHhhh----------------hhhhhCCCccc--c
Confidence 22244455566666665555432 333222 2333333322 55666665422 2
Q ss_pred CCCcceEEEecCccccccCC--CCCC-CCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc--cccccCCCC
Q 039689 581 NSSLESLKIRSCNSLVSFPD--FALP-SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY--IARIQLPPS 655 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~--~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~ 655 (763)
+.+|+.|++..| .+.++|. +..+ .+|+.|..+.+ .+...|.. .....+.|+.|++.+| .+++ +|.......
T Consensus 309 ~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~-~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 309 LKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSY-EENNHAALQELYLANN-HLTDSCFPVLVNFKH 384 (1081)
T ss_pred cceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-cccccccc-cchhhHHHHHHHHhcC-cccccchhhhccccc
Confidence 566777777553 3566665 1222 23555666555 34444421 1145677888888877 4432 444444568
Q ss_pred CcEEEEecCCC--C------CCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecc
Q 039689 656 LKRLIIFRCDN--L------RFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLD 724 (763)
Q Consensus 656 L~~L~l~~c~~--l------~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~ 724 (763)
|+.|+++++.- . ++..|++|++|| ++++.+|. .+..|++|...+ |.+..+| .+..++.|+.+|++
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecc
Confidence 88888887632 1 667889999998 88999887 567888888877 7899999 88999999999997
Q ss_pred cCCCCccccC-CCcc-cccceeeeccChh
Q 039689 725 NCPKLKYFSK-QGLP-KSLLRLIIDECPL 751 (763)
Q Consensus 725 ~c~~L~~l~~-~~~~-~~L~~L~i~~C~~ 751 (763)
. ++|..+-. ...| ++|+.|+++|+++
T Consensus 461 ~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 C-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred c-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 4 68887654 3566 8999999999974
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=7.5e-22 Score=201.49 Aligned_cols=341 Identities=20% Similarity=0.255 Sum_probs=171.6
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccc--ccccccccCc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL--KKLCKDMGNL 266 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l--~~lp~~i~~L 266 (763)
.|.+...+..++.|.|...++..+|+.++.+.+|+.|.+++|++.++-..++.|+.||.+++++| ++ ..+|++|-.|
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRL 102 (1255)
T ss_pred CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhccc
Confidence 34444555666666666666666666666666666666666666666556666666666666653 33 2356666666
Q ss_pred ccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcC
Q 039689 267 TKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDML 346 (763)
Q Consensus 267 ~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l 346 (763)
..|..||+++|. +++.|. +| ..-+++-.|++++|.+.+..... +
T Consensus 103 ~dLt~lDLShNq-L~EvP~-----~L-----------------------E~AKn~iVLNLS~N~IetIPn~l-------f 146 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ-LREVPT-----NL-----------------------EYAKNSIVLNLSYNNIETIPNSL-------F 146 (1255)
T ss_pred ccceeeecchhh-hhhcch-----hh-----------------------hhhcCcEEEEcccCccccCCchH-------H
Confidence 666666666665 555543 00 00112222333333221111000 0
Q ss_pred CCCCCc-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCC-CCCCCCCCCCCCCcceecccCCceEeCccccCCCcCC
Q 039689 347 KPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTC-TSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSV 424 (763)
Q Consensus 347 ~~l~~L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~-~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 424 (763)
-++..| .|+++.+....+|+.+.. +..|+.|.|++|+.. ..+..+..+++|+.|.+++...
T Consensus 147 inLtDLLfLDLS~NrLe~LPPQ~RR--L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR--------------- 209 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRLEMLPPQIRR--LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR--------------- 209 (1255)
T ss_pred HhhHhHhhhccccchhhhcCHHHHH--HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc---------------
Confidence 011111 233333344445554444 455555555555421 1111222233333444333211
Q ss_pred CCCCcceeeccccchhhhcCCC---CcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCccccc----CCCccccc
Q 039689 425 SFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLS----SPTDLSSL 495 (763)
Q Consensus 425 ~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~----~~~~L~~L 495 (763)
-...+| +.+.+|..++++.+. .++..+..+++|+.|++++|....+. ....+++|
T Consensus 210 ----------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 210 ----------------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETL 273 (1255)
T ss_pred ----------------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhh
Confidence 111233 234455555555432 34445556777777777777655432 23444444
Q ss_pred eeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccch
Q 039689 496 KLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEA 575 (763)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~ 575 (763)
.++...-...+...-.+++|++|.+.+|...- ..+|..+.+|..|. ++...+ |+++-+|++
T Consensus 274 NlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F------eGiPSGIGKL~~Le------------vf~aan-N~LElVPEg 334 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF------EGIPSGIGKLIQLE------------VFHAAN-NKLELVPEG 334 (1255)
T ss_pred ccccchhccchHHHhhhHHHHHHHhccCcccc------cCCccchhhhhhhH------------HHHhhc-cccccCchh
Confidence 44444333333444566777777766664321 25665544444322 222222 677777777
Q ss_pred hhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCC
Q 039689 576 WMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESL 621 (763)
Q Consensus 576 ~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~ 621 (763)
+.. |+.|+.|.+ +|+.+..+|. +..++.|+.||+..|+.+---
T Consensus 335 lcR--C~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 335 LCR--CVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhh--hHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCccCC
Confidence 544 677777777 4455666665 556677777888777766433
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.74 E-value=4.8e-19 Score=181.50 Aligned_cols=122 Identities=33% Similarity=0.613 Sum_probs=100.4
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC---CccChHHH
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD---DKCDIIPA 77 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~---~~~~i~~~ 77 (763)
+||+||++.|+... ....+.+.+++++|+++|+|+||||+++|+.|+.+.+..+|+.+++++...... ....++.+
T Consensus 161 ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 161 EALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999998765 234456778999999999999999999999997765678999999876554432 24679999
Q ss_pred HHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccC
Q 039689 78 LRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQE 123 (763)
Q Consensus 78 l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~ 123 (763)
+.+||+.|+++.|.||+|||+||+++.|+++.++++|+++|+++..
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999764
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=6.7e-18 Score=164.28 Aligned_cols=268 Identities=19% Similarity=0.172 Sum_probs=148.1
Q ss_pred cccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCccccccccc
Q 039689 198 RLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNN 274 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 274 (763)
.-..++|..|.|+.+| .+|+.+++||.||||+|.|+.+ |.+|..|.+|..|-+.+++++..+|.. |++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4466789999999996 7899999999999999999987 899999999999988888899999987 899999999998
Q ss_pred CCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCC-CccHHHHhh----cCC
Q 039689 275 SNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVE-PKTETQVID----MLK 347 (763)
Q Consensus 275 ~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~----~l~ 347 (763)
.-|. +..++. +..|..+. .|.+.+ +.+..+....+..+..++.+.+..|...... -....+... ..+
T Consensus 148 Nan~-i~Cir~~al~dL~~l~-lLslyD----n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLS-LLSLYD----NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcc-hhcccc----hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 8776 444333 33333333 222222 1222333345666667777766544311100 000000000 000
Q ss_pred CCCC-----c-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccC
Q 039689 348 PHQK-----L-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYG 419 (763)
Q Consensus 348 ~l~~-----L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 419 (763)
.... + .-.+.......+-. +...+..-..+.|.....-| .|..+++|+.|+++++....+....|.|
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c-----~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLC-----SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhh-----hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 0000 0 00000000000000 00111111112222222223 4778888888888887666665555555
Q ss_pred CCcCCCCCCcceeecccc-chhhhcCCCCcCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCC
Q 039689 420 SSCSVSFPSLETLFFVDI-CSKLQGTLPERLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCK 482 (763)
Q Consensus 420 ~~~~~~f~~L~~L~l~~~-~~~l~~~~~~~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~ 482 (763)
...++.|.+..+ ...+.+-+...+..|+.|++.++.. .+.+|..+.+|.+|.+-+|+
T Consensus 297 ------~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 297 ------AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ------hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 566777777662 1112223334455666666666542 22345556666666665553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.7e-15 Score=166.84 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=63.7
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 276 (763)
..-..|+++++.++.+|..+. .+|+.|++++|.++.+|. .+++|++|++++ +.+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecC-CccCcccCc---ccccceeeccC
Confidence 557789999999999998776 489999999999999985 358999999999 578888863 46888889888
Q ss_pred cccccccc
Q 039689 277 VGSLEEML 284 (763)
Q Consensus 277 ~~~l~~l~ 284 (763)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 86 54443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=4.5e-15 Score=165.10 Aligned_cols=252 Identities=29% Similarity=0.353 Sum_probs=149.2
Q ss_pred eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689 353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL 432 (763)
Q Consensus 353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L 432 (763)
.|++..+....+|..+ .++++.|++.+|. +..+|.+ .++|++|++++|. +.
T Consensus 205 ~LdLs~~~LtsLP~~l----~~~L~~L~L~~N~-Lt~LP~l--p~~Lk~LdLs~N~-Lt--------------------- 255 (788)
T PRK15387 205 VLNVGESGLTTLPDCL----PAHITTLVIPDNN-LTSLPAL--PPELRTLEVSGNQ-LT--------------------- 255 (788)
T ss_pred EEEcCCCCCCcCCcch----hcCCCEEEccCCc-CCCCCCC--CCCCcEEEecCCc-cC---------------------
Confidence 4455555666677655 3467788887764 3445532 3566666666542 21
Q ss_pred eccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCC
Q 039689 433 FFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGL 512 (763)
Q Consensus 433 ~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 512 (763)
.+|...++|+.|++.+|. +.......++|+.|++++|....++ ..+
T Consensus 256 -----------sLP~lp~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP----------------------~~p 301 (788)
T PRK15387 256 -----------SLPVLPPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLP----------------------VLP 301 (788)
T ss_pred -----------cccCcccccceeeccCCc-hhhhhhchhhcCEEECcCCcccccc----------------------ccc
Confidence 122223445555554443 1111112345666777666433221 124
Q ss_pred CCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecC
Q 039689 513 PKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSC 592 (763)
Q Consensus 513 ~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c 592 (763)
++|+.|++++|... .+|....+|+.|++++ +.++.+|.. ..+|+.|++++|
T Consensus 302 ~~L~~LdLS~N~L~--------~Lp~lp~~L~~L~Ls~----------------N~L~~LP~l-----p~~Lq~LdLS~N 352 (788)
T PRK15387 302 PGLQELSVSDNQLA--------SLPALPSELCKLWAYN----------------NQLTSLPTL-----PSGLQELSVSDN 352 (788)
T ss_pred cccceeECCCCccc--------cCCCCccccccccccc----------------Ccccccccc-----ccccceEecCCC
Confidence 56777777776432 3343333444444443 556666642 357888888764
Q ss_pred ccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCcc
Q 039689 593 NSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSL 672 (763)
Q Consensus 593 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L 672 (763)
.++.+|. .+++|+.|++++| .+..+|.. ..+|+.|++++| .++.+|.. + .+|
T Consensus 353 -~Ls~LP~--lp~~L~~L~Ls~N-~L~~LP~l-----~~~L~~LdLs~N-~Lt~LP~l--~----------------s~L 404 (788)
T PRK15387 353 -QLASLPT--LPSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-RLTSLPVL--P----------------SEL 404 (788)
T ss_pred -ccCCCCC--CCcccceehhhcc-ccccCccc-----ccccceEEecCC-cccCCCCc--c----------------cCC
Confidence 4566764 3567888888876 45666642 356888888877 56555421 2 245
Q ss_pred ceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCC
Q 039689 673 RKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 727 (763)
Q Consensus 673 ~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~ 727 (763)
+.|++++ +.+..+|..+.+|+.|++++ +.++.+|..+.++++|+.|++++|+
T Consensus 405 ~~LdLS~--N~LssIP~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 405 KELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CEEEccC--CcCCCCCcchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 5556654 45666666667888888888 6788899888888999999998875
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=1.8e-14 Score=140.65 Aligned_cols=260 Identities=18% Similarity=0.218 Sum_probs=153.9
Q ss_pred cchhhhhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCC-CCchhcch-hhhhcccccEEeecccccccccc
Q 039689 184 ERRQNVLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLST-TKIEILRE-SINTLYNLHTLLLEDCRRLKKLC 260 (763)
Q Consensus 184 ~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp 260 (763)
.+++.-+.+|+.+++||.|||++|.|+.| |+.|.++..|..|-+.+ |+|+.+|. .|++|..|+.|.+.- +.+..++
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchh
Confidence 34454566789999999999999999998 89999999998888877 89999985 579999999999988 4666665
Q ss_pred cc-ccCcccccccccCCccccccccc--CCCccCCCceeeec--------CcccccCcccchhhhhcCcccccceEEeec
Q 039689 261 KD-MGNLTKLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEIS--------RLENVKGVGDASEVQLNSKVNLKALYLQWG 329 (763)
Q Consensus 261 ~~-i~~L~~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~--------~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 329 (763)
.. +..|++|..|.+.+|. ++.++. +..+..++ .+... ++.............++..+......+.+.
T Consensus 157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~-tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIK-TLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred HHHHHHhhhcchhcccchh-hhhhccccccchhccc-hHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence 54 8999999999999987 666665 33333333 11111 111111111111222333333222222222
Q ss_pred cCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCC-ccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceeccc
Q 039689 330 VRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGM 407 (763)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~ 407 (763)
..............+.+.. .+.-..+.....|. .+.. +++|+.|++++|.....-+ +|..+..++.|.+..+
T Consensus 235 Ri~q~~a~kf~c~~esl~s----~~~~~d~~d~~cP~~cf~~--L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPS----RLSSEDFPDSICPAKCFKK--LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HhcccchhhhhhhHHhHHH----hhccccCcCCcChHHHHhh--cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 2111111111111111110 11111111111111 1222 7888888888886544333 7888888888888886
Q ss_pred CCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCC---cccEEEEecC
Q 039689 408 GRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLL---LLEKLNIFRC 460 (763)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~---~L~~L~l~~~ 460 (763)
..-......|.| +..|+.|++.+ ++++...|..|. .|..|.+..+
T Consensus 309 ~l~~v~~~~f~~------ls~L~tL~L~~--N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 309 KLEFVSSGMFQG------LSGLKTLSLYD--NQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hHHHHHHHhhhc------cccceeeeecC--CeeEEEecccccccceeeeeehccC
Confidence 544443444433 77888888887 566655665554 4555566543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.8e-14 Score=124.26 Aligned_cols=153 Identities=28% Similarity=0.394 Sum_probs=118.8
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
-.+.++..|.|++|+++.+|..|..+.+|++|++++|+|+++|.+++.|++|++|+++- +.+..+|.+|+.++.|+.||
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 45677888999999999999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689 274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE 353 (763)
Q Consensus 274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 353 (763)
+++|. +.+ ...+..|..+..|+.|++..|
T Consensus 109 ltynn-l~e--------------------------~~lpgnff~m~tlralyl~dn------------------------ 137 (264)
T KOG0617|consen 109 LTYNN-LNE--------------------------NSLPGNFFYMTTLRALYLGDN------------------------ 137 (264)
T ss_pred ccccc-ccc--------------------------ccCCcchhHHHHHHHHHhcCC------------------------
Confidence 99987 321 111223444555666655433
Q ss_pred EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceeccc
Q 039689 354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGM 407 (763)
Q Consensus 354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~ 407 (763)
....+|..++. +.+|+.|.+.+|..+ .+| .++.+..|+.|.|.++
T Consensus 138 ------dfe~lp~dvg~--lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 138 ------DFEILPPDVGK--LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ------CcccCChhhhh--hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 33445666666 777888888777654 344 6777777777777764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2.9e-12 Score=143.99 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=66.2
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 276 (763)
.+...|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++ +.+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCC-CccccCChhhh--ccccEEECcC
Confidence 467899999999999998764 689999999999999998775 5999999998 57888887654 4799999999
Q ss_pred cccccccc
Q 039689 277 VGSLEEML 284 (763)
Q Consensus 277 ~~~l~~l~ 284 (763)
|. +..+|
T Consensus 251 N~-L~~LP 257 (754)
T PRK15370 251 NR-ITELP 257 (754)
T ss_pred Cc-cCcCC
Confidence 87 54443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=7.6e-12 Score=140.58 Aligned_cols=157 Identities=24% Similarity=0.429 Sum_probs=93.5
Q ss_pred cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689 558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA 637 (763)
Q Consensus 558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 637 (763)
|+.|++++ |.++.+|..+ .++|+.|++++| .++.+|. ..+++|+.|++++| .++.+|..+ .++|+.|+
T Consensus 264 L~~L~Ls~-N~L~~LP~~l----~~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~ 331 (754)
T PRK15370 264 LQSLDLFH-NKISCLPENL----PEELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSN-SLTALPETL----PPGLKTLE 331 (754)
T ss_pred CCEEECcC-CccCcccccc----CCCCcEEECCCC-ccccCcc-cchhhHHHHHhcCC-ccccCCccc----cccceecc
Confidence 44455543 5666776642 357788888765 3566664 23356777888776 455666533 36777788
Q ss_pred eccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC-CCCCcCeEeeccCCCCccccCCCCCCC
Q 039689 638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR-FPASLTELKISDMPSLERLSSIGENLT 716 (763)
Q Consensus 638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~ip~~~~~l~ 716 (763)
+++| .++.+|. .++++|+.|++++| .+..+|. .+++|++|++++ +.++.+|..+. .
T Consensus 332 Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N------------------~L~~LP~~lp~~L~~LdLs~-N~Lt~LP~~l~--~ 388 (754)
T PRK15370 332 AGEN-ALTSLPA-SLPPELQVLDVSKN------------------QITVLPETLPPTITTLDVSR-NALTNLPENLP--A 388 (754)
T ss_pred ccCC-ccccCCh-hhcCcccEEECCCC------------------CCCcCChhhcCCcCEEECCC-CcCCCCCHhHH--H
Confidence 8777 5665553 23344555444433 3444443 446777888877 46667775432 3
Q ss_pred CcCceecccCCCCccccCC-----CcccccceeeeccCh
Q 039689 717 SLKFLDLDNCPKLKYFSKQ-----GLPKSLLRLIIDECP 750 (763)
Q Consensus 717 ~L~~L~l~~c~~L~~l~~~-----~~~~~L~~L~i~~C~ 750 (763)
+|+.|++++| ++..+|.. +..+++..|++.++|
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 5777777774 56666541 112456777777776
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=1.6e-13 Score=118.51 Aligned_cols=104 Identities=26% Similarity=0.324 Sum_probs=92.2
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccc-ccccccccCcc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL-KKLCKDMGNLT 267 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l-~~lp~~i~~L~ 267 (763)
+|+.+..+.+|.+|++.+|+|+++|.+++.+++||.|+++-|++..+|..||.++.|++|||++|+.- ..+|..|-.|+
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999995432 45788899999
Q ss_pred cccccccCCccccccccc-CCCccCCC
Q 039689 268 KLHHLNNSNVGSLEEMLM-LKSLVHLQ 293 (763)
Q Consensus 268 ~L~~L~l~~~~~l~~l~~-l~~L~~L~ 293 (763)
.|+.|++++|. ++.+|. .++|++|+
T Consensus 128 tlralyl~dnd-fe~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 128 TLRALYLGDND-FEILPPDVGKLTNLQ 153 (264)
T ss_pred HHHHHHhcCCC-cccCChhhhhhccee
Confidence 99999999998 776654 66666665
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=4.8e-12 Score=144.47 Aligned_cols=86 Identities=36% Similarity=0.465 Sum_probs=79.1
Q ss_pred cCCCCcccEEEecCCC-CCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 193 LLNLPRLRVFSLRGYN-IFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
|..++.||+|||++|. +.++|++|+.|.+||||+|+++.|+.+|.++++|+.|.+||+.++..+..+|..+..|.+||+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 6889999999999887 789999999999999999999999999999999999999999998777777776777999999
Q ss_pred cccCCcc
Q 039689 272 LNNSNVG 278 (763)
Q Consensus 272 L~l~~~~ 278 (763)
|.+....
T Consensus 647 L~l~~s~ 653 (889)
T KOG4658|consen 647 LRLPRSA 653 (889)
T ss_pred EEeeccc
Confidence 9987654
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.88 E-value=3.6e-11 Score=118.99 Aligned_cols=212 Identities=17% Similarity=0.264 Sum_probs=107.5
Q ss_pred cCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhh-----------cceeeeccCCCcccccchhh
Q 039689 509 EQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISL-----------LRTVKIEDCNALESLPEAWM 577 (763)
Q Consensus 509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~-----------L~~L~l~~~~~l~~l~~~~~ 577 (763)
...+++|+++.+++|+.... .+...+......++.+..++|.....- +.++++.+|+.++...-..+
T Consensus 212 a~gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHhhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 36688888888888886652 111112234445666666666544321 45555666766665543333
Q ss_pred hcCCCCcceEEEecCccccccCC---CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccc---c
Q 039689 578 HNSNSSLESLKIRSCNSLVSFPD---FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARI---Q 651 (763)
Q Consensus 578 ~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~---~ 651 (763)
...+..|+.|+.++|..+++.+- ....++|+.+.+++|..++...-.....+++.|+.+++..|..+..-... .
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 33456677777777766554432 23446777777777766655544444456667777777766444322110 1
Q ss_pred CCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCc
Q 039689 652 LPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLK 730 (763)
Q Consensus 652 ~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~ 730 (763)
-.+.|+.|.++.|..+.-...+.+.-+ ......|+.+.+++|+.+++---. ...+++|+.+++.+|....
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~---------~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSS---------SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhc---------cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 122333333333332211111111111 013345555666666555443221 2445566666666665444
Q ss_pred c
Q 039689 731 Y 731 (763)
Q Consensus 731 ~ 731 (763)
.
T Consensus 441 k 441 (483)
T KOG4341|consen 441 K 441 (483)
T ss_pred h
Confidence 3
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=7.6e-10 Score=115.53 Aligned_cols=83 Identities=27% Similarity=0.269 Sum_probs=43.4
Q ss_pred CCcccEEEecCCCCC-----ccCcccCCCCcccEEecCCCCchh-------cchhhhhcccccEEeeccccccccccccc
Q 039689 196 LPRLRVFSLRGYNIF-----ELPKAIENLKHLRFLDLSTTKIEI-------LRESINTLYNLHTLLLEDCRRLKKLCKDM 263 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~L~~L~~L~L~~~~~l~~lp~~i 263 (763)
+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344666666666652 234444555556666666654441 23445556666666666644333333334
Q ss_pred cCccc---ccccccCCcc
Q 039689 264 GNLTK---LHHLNNSNVG 278 (763)
Q Consensus 264 ~~L~~---L~~L~l~~~~ 278 (763)
..+.+ |++|++++|.
T Consensus 102 ~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 102 ESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHhccCcccEEEeeCCc
Confidence 44433 6666666654
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=2.7e-09 Score=97.40 Aligned_cols=86 Identities=31% Similarity=0.456 Sum_probs=27.2
Q ss_pred CCCCcccEEEecCCCCCccCcccC-CCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccc-cCcccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIE-NLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDM-GNLTKLHH 271 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~ 271 (763)
.+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ +.+..+++.+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 34456788888888887773 354 5788888888888888874 577788888888888 6777776555 35788888
Q ss_pred cccCCccccccc
Q 039689 272 LNNSNVGSLEEM 283 (763)
Q Consensus 272 L~l~~~~~l~~l 283 (763)
|++++|. +..+
T Consensus 93 L~L~~N~-I~~l 103 (175)
T PF14580_consen 93 LYLSNNK-ISDL 103 (175)
T ss_dssp EE-TTS----SC
T ss_pred EECcCCc-CCCh
Confidence 8888886 4443
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=1e-10 Score=115.82 Aligned_cols=276 Identities=18% Similarity=0.284 Sum_probs=147.3
Q ss_pred CCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcC----CCCcCCcccEEEEecCcchhh-----cCC
Q 039689 398 FLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGT----LPERLLLLEKLNIFRCEQLLV-----TLQ 468 (763)
Q Consensus 398 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~----~~~~~~~L~~L~l~~~~~l~~-----~l~ 468 (763)
.|+.|.+.++.........-+ ....|+++.|.+.+ |.+++.. +...+++|++|.+..|..+.. ...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~----~~~CpnIehL~l~g-c~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTF----ASNCPNIEHLALYG-CKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHH----hhhCCchhhhhhhc-ceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 467777777655443221100 12356677776666 4443321 223566777777777765433 223
Q ss_pred CCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceee
Q 039689 469 CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQI 548 (763)
Q Consensus 469 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l 548 (763)
.+++|++|+++.|+.+..... .....+...++++...+|..++.-... .......-+.++++
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv----------------~~~~rG~~~l~~~~~kGC~e~~le~l~--~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGV----------------QALQRGCKELEKLSLKGCLELELEALL--KAAAYCLEILKLNL 275 (483)
T ss_pred hhhhHHHhhhccCchhhcCcc----------------hHHhccchhhhhhhhcccccccHHHHH--HHhccChHhhccch
Confidence 466777777776665442111 111244455666666666544311000 01122233455555
Q ss_pred ccCCchhhh-----------cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC---CCCCCCccEEEEcc
Q 039689 549 SRCPQLISL-----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD---FALPSQLRTVTIKG 614 (763)
Q Consensus 549 ~~~~~l~~~-----------L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~ 614 (763)
..|..+++. |+.|..++|..++..+-....+..++|+.|.++.|..++.... ....+.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 566544432 6777777777766655444445577788888887776554321 24456777777777
Q ss_pred CCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC------CCCCcEEEEecCCCCCCCccceEEecCCCCCccccC
Q 039689 615 CDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL------PPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSP 688 (763)
Q Consensus 615 ~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~------~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~ 688 (763)
|.....-.-.-...+++.|+.+.+++|..+++.....+ ...++.+.+.+|+.+.-..|++|.. |
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~---c------- 425 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI---C------- 425 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh---C-------
Confidence 74433221111225677788888887766655421111 2345555666666554444454443 2
Q ss_pred CCCCCcCeEeeccCCCCcccc
Q 039689 689 RFPASLTELKISDMPSLERLS 709 (763)
Q Consensus 689 ~~~~~L~~L~l~~~~~l~~ip 709 (763)
++|+.+++..|...+.-+
T Consensus 426 ---~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 426 ---RNLERIELIDCQDVTKEA 443 (483)
T ss_pred ---cccceeeeechhhhhhhh
Confidence 366667777776665543
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.73 E-value=5e-08 Score=100.00 Aligned_cols=160 Identities=26% Similarity=0.425 Sum_probs=88.5
Q ss_pred cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689 558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA 637 (763)
Q Consensus 558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 637 (763)
++.|++++| .++.+|.- .++|++|.+++|..++.+|+ ..+++|+.|++++|..+..+|. +|+.|+
T Consensus 54 l~~L~Is~c-~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~--------sLe~L~ 118 (426)
T PRK15386 54 SGRLYIKDC-DIESLPVL-----PNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE--------SVRSLE 118 (426)
T ss_pred CCEEEeCCC-CCcccCCC-----CCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc--------ccceEE
Confidence 556666665 56666621 45677777777777777665 2356777777777766655543 355555
Q ss_pred eccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC-CCCCcCeEeeccCCCCccccCCCCCCC
Q 039689 638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR-FPASLTELKISDMPSLERLSSIGENLT 716 (763)
Q Consensus 638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~ip~~~~~l~ 716 (763)
+..+ ....+ ..+|++|+.|.+.++.. .....+|. .|++|++|.+++|..+ .+|..+ ..
T Consensus 119 L~~n-~~~~L--~~LPssLk~L~I~~~n~---------------~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--P~ 177 (426)
T PRK15386 119 IKGS-ATDSI--KNVPNGLTSLSINSYNP---------------ENQARIDNLISPSLKTLSLTGCSNI-ILPEKL--PE 177 (426)
T ss_pred eCCC-CCccc--ccCcchHhheecccccc---------------ccccccccccCCcccEEEecCCCcc-cCcccc--cc
Confidence 5532 22222 23455566555432110 01111221 4567888888777644 233222 15
Q ss_pred CcCceecccCCC-CccccCCCcccccceeeeccChhHHH
Q 039689 717 SLKFLDLDNCPK-LKYFSKQGLPKSLLRLIIDECPLIEK 754 (763)
Q Consensus 717 ~L~~L~l~~c~~-L~~l~~~~~~~~L~~L~i~~C~~l~~ 754 (763)
+|+.|+++.+.. ...++...+|+++ .|++.+|.++..
T Consensus 178 SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 178 SLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 777777766421 1124445666777 777777766544
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.64 E-value=1.1e-07 Score=97.42 Aligned_cols=134 Identities=29% Similarity=0.512 Sum_probs=97.2
Q ss_pred CCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEE
Q 039689 581 NSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLI 660 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 660 (763)
+..++.|++++| .++.+| ..+++|++|.+++|..++.+|..+ .++|+.|++++|..+..+ |++|+.|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL-----PESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc-----ccccceEE
Confidence 688999999988 688888 567889999999999998888643 468999999999777543 45566665
Q ss_pred EecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCc--cccCCCCCC-CCcCceecccCCCCccccCCCc
Q 039689 661 IFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLE--RLSSIGENL-TSLKFLDLDNCPKLKYFSKQGL 737 (763)
Q Consensus 661 l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~ip~~~~~l-~~L~~L~l~~c~~L~~l~~~~~ 737 (763)
+. +.....++..|++|++|.+.+++... .+| ..+ ++|++|++++|..+. +| ..+
T Consensus 119 L~------------------~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP-~~L 175 (426)
T PRK15386 119 IK------------------GSATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LP-EKL 175 (426)
T ss_pred eC------------------CCCCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Cc-ccc
Confidence 42 23333344456789999986533221 112 122 689999999998654 44 458
Q ss_pred ccccceeeeccC
Q 039689 738 PKSLLRLIIDEC 749 (763)
Q Consensus 738 ~~~L~~L~i~~C 749 (763)
|.+|+.|+++.+
T Consensus 176 P~SLk~L~ls~n 187 (426)
T PRK15386 176 PESLQSITLHIE 187 (426)
T ss_pred cccCcEEEeccc
Confidence 899999999775
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=4.1e-08 Score=73.43 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=43.9
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDC 253 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~ 253 (763)
++|++|++++|+++.+| ..|.++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46788888888888775 57778888888888888888774 46678888888888775
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=9.9e-09 Score=107.12 Aligned_cols=90 Identities=26% Similarity=0.266 Sum_probs=56.0
Q ss_pred hhhccCCCCcccEEEecCCCCCc-cCcccCCCCc---ccEEecCCCCch-----hcchhhhhc-ccccEEeecccccc--
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-LPKAIENLKH---LRFLDLSTTKIE-----ILRESINTL-YNLHTLLLEDCRRL-- 256 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~---L~~L~L~~~~i~-----~lp~~~~~L-~~L~~L~L~~~~~l-- 256 (763)
++..+..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.++ .+...+..+ ++|+.|++++|...
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 34455557777888887777653 2344444443 778888777765 234455666 77788887775422
Q ss_pred --ccccccccCcccccccccCCcc
Q 039689 257 --KKLCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 257 --~~lp~~i~~L~~L~~L~l~~~~ 278 (763)
..++..+..+++|++|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCC
Confidence 1334445666777777777775
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=3.1e-08 Score=106.51 Aligned_cols=91 Identities=36% Similarity=0.446 Sum_probs=78.7
Q ss_pred cCCCCcccEEEecCCCCCccCcccCCCC-cccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 193 LLNLPRLRVFSLRGYNIFELPKAIENLK-HLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
+..++.++.|++.+|.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence 3455789999999999999988888885 99999999999999988899999999999999 688889887778999999
Q ss_pred cccCCccccccccc
Q 039689 272 LNNSNVGSLEEMLM 285 (763)
Q Consensus 272 L~l~~~~~l~~l~~ 285 (763)
|++++|. +..+|.
T Consensus 191 L~ls~N~-i~~l~~ 203 (394)
T COG4886 191 LDLSGNK-ISDLPP 203 (394)
T ss_pred eeccCCc-cccCch
Confidence 9999998 776665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=6.1e-08 Score=88.61 Aligned_cols=86 Identities=29% Similarity=0.442 Sum_probs=42.3
Q ss_pred hccC-CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccccccc--cccCc
Q 039689 191 QRLL-NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLKKLCK--DMGNL 266 (763)
Q Consensus 191 ~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~~lp~--~i~~L 266 (763)
+.+. .+.+|++|++++|.|+.++ .+..+++|++|++++|.|+++++.+ ..+++|++|++++ +.+..+-+ .++.+
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSL 112 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence 3443 5789999999999999985 5888999999999999999997766 5799999999999 57766543 36788
Q ss_pred ccccccccCCcc
Q 039689 267 TKLHHLNNSNVG 278 (763)
Q Consensus 267 ~~L~~L~l~~~~ 278 (763)
++|++|++.+|.
T Consensus 113 ~~L~~L~L~~NP 124 (175)
T PF14580_consen 113 PKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TT-G
T ss_pred CCcceeeccCCc
Confidence 999999999998
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.2e-08 Score=96.70 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCceEEEEeccCC--CCCCCCCCCCCCCCcceecccCC
Q 039689 374 SKLMLLKFDNCGT--CTSLPSVGQLPFLKDPVISGMGR 409 (763)
Q Consensus 374 ~~L~~L~l~~~~~--~~~l~~l~~l~~L~~L~l~~~~~ 409 (763)
-+|..|++++|.. ++.+..+|++|.|+.+.+.+++.
T Consensus 374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 4555566666542 33445777788888887777654
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=7.1e-09 Score=106.89 Aligned_cols=157 Identities=23% Similarity=0.316 Sum_probs=106.4
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK 268 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 268 (763)
+|..+..+..|..+.|..|.+..+|..++.+..|.+|||+.|+++.+|..+..|+ |+.|.+++ +++..+|++++.+..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchh
Confidence 4555666677778888888888888888888888888888888888888887764 78888887 688888888888888
Q ss_pred ccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689 269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK 347 (763)
Q Consensus 269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 347 (763)
|.+||.+.|. ++.+|. +..|..|+ .|.+..|.. ....+.+.
T Consensus 168 l~~ld~s~ne-i~slpsql~~l~slr-----------------------------~l~vrRn~l--------~~lp~El~ 209 (722)
T KOG0532|consen 168 LAHLDVSKNE-IQSLPSQLGYLTSLR-----------------------------DLNVRRNHL--------EDLPEELC 209 (722)
T ss_pred HHHhhhhhhh-hhhchHHhhhHHHHH-----------------------------HHHHhhhhh--------hhCCHHHh
Confidence 8888888887 555543 44444444 222222210 01112222
Q ss_pred CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCC
Q 039689 348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTC 387 (763)
Q Consensus 348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~ 387 (763)
.++-..|+++.++...+|-.+.. +..|++|.|.+|+..
T Consensus 210 ~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQ 247 (722)
T ss_pred CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCC
Confidence 22222566666667777766665 777778888777643
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.6e-08 Score=97.37 Aligned_cols=84 Identities=27% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCCCcccEEEecCCCCCccC--cccCCCCcccEEecCCCCchh---cchhhhhcccccEEeecccccccccccc--ccCc
Q 039689 194 LNLPRLRVFSLRGYNIFELP--KAIENLKHLRFLDLSTTKIEI---LRESINTLYNLHTLLLEDCRRLKKLCKD--MGNL 266 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~~---lp~~~~~L~~L~~L~L~~~~~l~~lp~~--i~~L 266 (763)
+++++||...|.++.+...+ .....+++++.||||+|-+.. +-.-...|++|+.|+|+.| .+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 67888999999998887766 467789999999999987663 3445578999999999984 44332222 2356
Q ss_pred ccccccccCCcc
Q 039689 267 TKLHHLNNSNVG 278 (763)
Q Consensus 267 ~~L~~L~l~~~~ 278 (763)
++|+.|.+++|.
T Consensus 197 ~~lK~L~l~~CG 208 (505)
T KOG3207|consen 197 SHLKQLVLNSCG 208 (505)
T ss_pred hhhheEEeccCC
Confidence 677777787776
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3e-08 Score=99.22 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=98.6
Q ss_pred cCCcccEEEEecCcchh----hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEecc
Q 039689 448 RLLLLEKLNIFRCEQLL----VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHV 523 (763)
Q Consensus 448 ~~~~L~~L~l~~~~~l~----~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 523 (763)
.+.+|+++.+.+|+.-. ...+.+|+++.|++++|-...+. ....+...+|+|+.|.++.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----------------~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----------------PVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----------------HHHHHHHhcccchhcccccc
Confidence 56677777777765211 24566889999999987433321 11223367899999999988
Q ss_pred CCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCc-ccccchhhhcCCCCcceEEEecCccccc-cCCC
Q 039689 524 REQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNAL-ESLPEAWMHNSNSSLESLKIRSCNSLVS-FPDF 601 (763)
Q Consensus 524 ~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~ 601 (763)
..... ..+.....++. |+.|.+++|.-- ..+.. ....+|+|+.|++++|+.+.. -...
T Consensus 183 rl~~~-----------~~s~~~~~l~~-------lK~L~l~~CGls~k~V~~--~~~~fPsl~~L~L~~N~~~~~~~~~~ 242 (505)
T KOG3207|consen 183 RLSNF-----------ISSNTTLLLSH-------LKQLVLNSCGLSWKDVQW--ILLTFPSLEVLYLEANEIILIKATST 242 (505)
T ss_pred cccCC-----------ccccchhhhhh-------hheEEeccCCCCHHHHHH--HHHhCCcHHHhhhhcccccceecchh
Confidence 75431 11222223333 666666666432 22211 223489999999998853322 2234
Q ss_pred CCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689 602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY 646 (763)
Q Consensus 602 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 646 (763)
..+..|++|+|++|+.+. .+..-....+|.|+.|+++.| .+.+
T Consensus 243 ~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t-gi~s 285 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST-GIAS 285 (505)
T ss_pred hhhhHHhhccccCCcccc-cccccccccccchhhhhcccc-Ccch
Confidence 667889999999986554 332112278999999999988 4444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.7e-07 Score=69.98 Aligned_cols=58 Identities=34% Similarity=0.418 Sum_probs=52.0
Q ss_pred CcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689 220 KHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 220 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 278 (763)
++|++|++++|.++.+| ..|.++++|++|++++ +.+..+|+ .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999999999997 5779999999999998 57788876 58999999999999986
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=2.9e-07 Score=98.96 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=71.9
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcc-cccEEeeccccccccccccccCcccccccccCCcc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLY-NLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 278 (763)
..+++..+.+...+..+..++.++.|++.+|.++.+|+..+.+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence 36888888875555666677999999999999999999999995 999999999 7899998889999999999999998
Q ss_pred ccccccc
Q 039689 279 SLEEMLM 285 (763)
Q Consensus 279 ~l~~l~~ 285 (763)
+..++.
T Consensus 175 -l~~l~~ 180 (394)
T COG4886 175 -LSDLPK 180 (394)
T ss_pred -hhhhhh
Confidence 665554
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=1.9e-07 Score=91.12 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=62.3
Q ss_pred hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCC----Cchhcchhh-------hhcccccEEeecc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTT----KIEILRESI-------NTLYNLHTLLLED 252 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~----~i~~lp~~~-------~~L~~L~~L~L~~ 252 (763)
+.+....+..+..++|+||.+.. +-..+.+.++|+.-++|+- ...++|+.+ -..++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 44455677888999999998753 3455677788999998863 123555543 3446899999999
Q ss_pred ccccccccc----cccCcccccccccCCcc
Q 039689 253 CRRLKKLCK----DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 253 ~~~l~~lp~----~i~~L~~L~~L~l~~~~ 278 (763)
|-.=..-++ -+.+.+.|++|+|.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 533222232 25678899999999997
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.2e-06 Score=98.65 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=69.8
Q ss_pred cccEEEecCCCCC-ccCcccCCCCcccEEecCCCCch-hcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689 198 RLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS 275 (763)
Q Consensus 198 ~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 275 (763)
.++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|+.+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888876 46788888888888888888887 678888888888888888866556788888888888888888
Q ss_pred Cccccccccc
Q 039689 276 NVGSLEEMLM 285 (763)
Q Consensus 276 ~~~~l~~l~~ 285 (763)
+|..-..+|.
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 8873334554
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.3e-06 Score=59.47 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=18.4
Q ss_pred cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc
Q 039689 198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL 235 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l 235 (763)
+|++|++++|+|+.+|..++.|++|++|++++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555544455555555555555554443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.15 E-value=1.8e-07 Score=96.76 Aligned_cols=134 Identities=27% Similarity=0.314 Sum_probs=103.4
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK 268 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 268 (763)
++..+..+..|.+|||+.|+++.+|..++.|+ |++|-+++|+++.+|+.++.+..|..||.+. +.+..+|..++.|.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~s 190 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTS 190 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHH
Confidence 57777888899999999999988888887765 8999999999999999999889999999988 578888888999999
Q ss_pred ccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689 269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD 332 (763)
Q Consensus 269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 332 (763)
|+.|.+..|. +..+|. +..|+ |. +|+++. +.....+..|.+|++|+.|.+..|...
T Consensus 191 lr~l~vrRn~-l~~lp~El~~Lp-Li-~lDfSc-----Nkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 191 LRDLNVRRNH-LEDLPEELCSLP-LI-RLDFSC-----NKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHhhhh-hhhCCHHHhCCc-ee-eeeccc-----CceeecchhhhhhhhheeeeeccCCCC
Confidence 9999998887 555554 44332 22 344433 222345567888899999988777443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=2.3e-06 Score=96.46 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=66.0
Q ss_pred hhhccCCCCcccEEEecCCCCC-ccCcccCCCCcccEEecCCCCch-hcchhhhhcccccEEeeccccccccccccccCc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNL 266 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L 266 (763)
++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|+.+++|++|++|+|++|.....+|..++.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 5566677777888888777765 46777777788888888877776 567777778888888887766556777766553
Q ss_pred -ccccccccCCccccc
Q 039689 267 -TKLHHLNNSNVGSLE 281 (763)
Q Consensus 267 -~~L~~L~l~~~~~l~ 281 (763)
.++..+++.+|..+.
T Consensus 514 ~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 514 LLHRASFNFTDNAGLC 529 (623)
T ss_pred cccCceEEecCCcccc
Confidence 356666776665333
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=3.8e-06 Score=57.18 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=31.0
Q ss_pred CcccEEecCCCCchhcchhhhhcccccEEeecccccccccc
Q 039689 220 KHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLC 260 (763)
Q Consensus 220 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp 260 (763)
++|++|++++|.|+.+|+.+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4788899999998888888888999999999884 566554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-07 Score=89.06 Aligned_cols=86 Identities=28% Similarity=0.347 Sum_probs=56.8
Q ss_pred CcccEEecCCCCch--hcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCCCceee
Q 039689 220 KHLRFLDLSTTKIE--ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLE 297 (763)
Q Consensus 220 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~ 297 (763)
+.|++||||...|+ .+-.-+....+|+.|.|.+...-..+-..|++-.+|+.|++++|..+.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--------------- 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--------------- 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---------------
Confidence 45788888887776 4445557777888888887544444555577778888888888763322
Q ss_pred ecCcccccCcccchhhhhcCcccccceEEeeccC
Q 039689 298 ISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR 331 (763)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 331 (763)
.+...-+.+++.|.+|+++|+..
T Consensus 250 -----------n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 250 -----------NALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred -----------hHHHHHHHhhhhHhhcCchHhhc
Confidence 12223456677788888888754
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=1e-06 Score=83.89 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred hhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccc
Q 039689 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL 269 (763)
Q Consensus 190 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 269 (763)
...+...+.|..|||++|.|+.+.++..-.+.+|.|++|+|+|..+.. +..|.+|+.|||++ +.+..+-..=.+|-|.
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNI 354 (490)
T ss_pred EEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCE
Confidence 334455678899999999999998888889999999999999988844 88899999999999 5677665545577788
Q ss_pred cccccCCcccccccccCCCccCCCceeeecCcccccCcccc-hhhhhcCcccccceEEeeccCCC
Q 039689 270 HHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA-SEVQLNSKVNLKALYLQWGVRDA 333 (763)
Q Consensus 270 ~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 333 (763)
+.|.+++|. ++.+..+++|-.|. .|+..+ +.+... ....+++++.|+.+.+..|....
T Consensus 355 KtL~La~N~-iE~LSGL~KLYSLv-nLDl~~----N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNK-IETLSGLRKLYSLV-NLDLSS----NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhh-HhhhhhhHhhhhhe-eccccc----cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888898887 77766666655554 343332 111111 12357788899999998875443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.6e-07 Score=87.88 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=73.7
Q ss_pred CCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccc---cccCCCCC
Q 039689 581 NSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIA---RIQLPPSL 656 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~~~L 656 (763)
+..|+.|.+++...-..+.. +..-.+|+.|++++|..++......+...++.|+.|+++-|.-.+... .....+.|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 67788888877553222222 344567888888888888776655444788888888888884433221 11234566
Q ss_pred cEEEEecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCcccc-CCCCCCCCcCceecccC
Q 039689 657 KRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLS-SIGENLTSLKFLDLDNC 726 (763)
Q Consensus 657 ~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip-~~~~~l~~L~~L~l~~c 726 (763)
..|.+++|... |+.-+ +..+....++|.+||+++|..++.-. ..+..|+.|++|.++.|
T Consensus 289 ~~LNlsG~rrn----l~~sh-------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 289 TQLNLSGYRRN----LQKSH-------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhHhh----hhhhH-------HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 66666666532 11100 01111133455555555555544411 12245555555555555
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=2.8e-06 Score=91.46 Aligned_cols=89 Identities=27% Similarity=0.328 Sum_probs=63.5
Q ss_pred cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccc
Q 039689 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL 272 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 272 (763)
+..++.|..|++.+|.|..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++++ +.+..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-CcchhccC-Cccchhhhcc
Confidence 4667777888888888777765577778888888888877777 3566677788888877 56666643 6667778888
Q ss_pred ccCCccccccccc
Q 039689 273 NNSNVGSLEEMLM 285 (763)
Q Consensus 273 ~l~~~~~l~~l~~ 285 (763)
++++|. +..+..
T Consensus 168 ~l~~n~-i~~ie~ 179 (414)
T KOG0531|consen 168 DLSYNR-IVDIEN 179 (414)
T ss_pred cCCcch-hhhhhh
Confidence 887776 444443
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=7.3e-06 Score=88.24 Aligned_cols=128 Identities=30% Similarity=0.341 Sum_probs=96.6
Q ss_pred CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN 274 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 274 (763)
.+..++.+.+..|.+..+-..++.+++|++|++.+|.|..+...+..+++|++|++++ +.+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhhee
Confidence 4566677778888888866778999999999999999999976699999999999999 68888854 889999999999
Q ss_pred CCcccccccccCCCccCCCceeeecCcccccCcccchh-hhhcCcccccceEEeeccC
Q 039689 275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASE-VQLNSKVNLKALYLQWGVR 331 (763)
Q Consensus 275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 331 (763)
++|. +..+..+..+..|+ .+.+.+.... .... . ...+.+++.+++..|..
T Consensus 148 ~~N~-i~~~~~~~~l~~L~-~l~l~~n~i~----~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNL-ISDISGLESLKSLK-LLDLSYNRIV----DIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCc-chhccCCccchhhh-cccCCcchhh----hhhhhh-hhhccchHHHhccCCch
Confidence 9998 88877777766666 5554442111 1111 1 35566677777765543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=7.2e-06 Score=69.09 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=69.9
Q ss_pred CCCcccEEEecCCCCCccCcccC-CCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPKAIE-NLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
...+|+..+|++|.+.++|..|. ..+..+.|+|++|.|+++|.++..++.|+.|+++. +.+...|.-|..|.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence 34567778899999998987764 45588999999999999999999999999999998 67888888888899999998
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
..++.
T Consensus 130 s~~na 134 (177)
T KOG4579|consen 130 SPENA 134 (177)
T ss_pred CCCCc
Confidence 88876
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=3.7e-06 Score=89.72 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=60.7
Q ss_pred hccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccc
Q 039689 191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH 270 (763)
Q Consensus 191 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 270 (763)
+++.-++.|+.|+|++|++++.- .+..+.+|++|||++|.+..+|.--..=.+|+.|++++ |.++.+- +|.+|++|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhhh
Confidence 34455677888888888877664 67778888888888888887764322223488888887 5677763 478888888
Q ss_pred ccccCCcc
Q 039689 271 HLNNSNVG 278 (763)
Q Consensus 271 ~L~l~~~~ 278 (763)
.||+++|-
T Consensus 258 ~LDlsyNl 265 (1096)
T KOG1859|consen 258 GLDLSYNL 265 (1096)
T ss_pred ccchhHhh
Confidence 88888775
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.29 E-value=4.4e-05 Score=72.16 Aligned_cols=225 Identities=20% Similarity=0.178 Sum_probs=118.9
Q ss_pred hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCc----hhc-------chhhhhcccccEEeecc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKI----EIL-------RESINTLYNLHTLLLED 252 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i----~~l-------p~~~~~L~~L~~L~L~~ 252 (763)
+...+..+..+..++||||.|.. +-..+.+-.+|++-+++.-.. ..+ .+.+-++++|+..+||+
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 34445557888899999998764 345567778899998886321 133 34556779999999999
Q ss_pred cccccccccc----ccCcccccccccCCccccccccc--CC-CccCCCceeeecCcccccCcccchhhhhcCcccccceE
Q 039689 253 CRRLKKLCKD----MGNLTKLHHLNNSNVGSLEEMLM--LK-SLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALY 325 (763)
Q Consensus 253 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l~~--l~-~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 325 (763)
|-.-...|+. |+.-+.|+||.+++|. +.-+.. ++ .|.+| +......+.+.|+...
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~l-----------------a~nKKaa~kp~Le~vi 163 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHL-----------------AYNKKAADKPKLEVVI 163 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHH-----------------HHHhhhccCCCceEEE
Confidence 6544455543 6677899999999987 432221 00 00000 0111122334455444
Q ss_pred EeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCCCCCCc------cCCCCCCCceEEEEeccCCCCC----CC-CC
Q 039689 326 LQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKFPIW------LGDSLFSKLMLLKFDNCGTCTS----LP-SV 393 (763)
Q Consensus 326 l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~~~p~~------~~~~~~~~L~~L~l~~~~~~~~----l~-~l 393 (763)
...|......... .-..+.....+ .+.+..+++. |.. .+-....+|+.|++.+|..... +. .+
T Consensus 164 cgrNRlengs~~~---~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 164 CGRNRLENGSKEL---SAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred eccchhccCcHHH---HHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 4433222211111 11122222333 3333333221 221 1222367899999998864221 11 35
Q ss_pred CCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccc
Q 039689 394 GQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVD 436 (763)
Q Consensus 394 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 436 (763)
...+.|+.|.+.+|-.-..-..++....+...+|+|..|...+
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 5667788888887744332222222111123456666666655
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=5.2e-05 Score=72.65 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=53.5
Q ss_pred CCCCcccEEEecCCCCCccC---cccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccc--cccccccCcc
Q 039689 194 LNLPRLRVFSLRGYNIFELP---KAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLK--KLCKDMGNLT 267 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~--~lp~~i~~L~ 267 (763)
..+..++.|||.+|.|+... ....+|++|++|+|+.|.+..--... -.+.+|++|-|.+ +.+. .....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcch
Confidence 45667778888888877643 33467788888888887655221111 3566788888877 4432 2333466677
Q ss_pred cccccccCCcc
Q 039689 268 KLHHLNNSNVG 278 (763)
Q Consensus 268 ~L~~L~l~~~~ 278 (763)
.+++|+++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777777764
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=4.6e-05 Score=64.39 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=72.2
Q ss_pred CcccEEEecCCCCCccCc---ccCCCCcccEEecCCCCchhcchhhh-hcccccEEeeccccccccccccccCccccccc
Q 039689 197 PRLRVFSLRGYNIFELPK---AIENLKHLRFLDLSTTKIEILRESIN-TLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL 272 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~---~~~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 272 (763)
+.+-.++|+.|.+..+++ .+.+..+|...+|++|.+...|+.|. +.+.+++|++++ +.+.++|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 455678899998776654 45677888999999999999999985 556999999999 7999999999999999999
Q ss_pred ccCCcccccccc
Q 039689 273 NNSNVGSLEEML 284 (763)
Q Consensus 273 ~l~~~~~l~~l~ 284 (763)
+++.|. +...|
T Consensus 106 Nl~~N~-l~~~p 116 (177)
T KOG4579|consen 106 NLRFNP-LNAEP 116 (177)
T ss_pred ccccCc-cccch
Confidence 999998 44433
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00019 Score=80.79 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCcccEEecCCCCch--hcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689 219 LKHLRFLDLSTTKIE--ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 219 l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 276 (763)
++.|+.|.+++-.+. +.-.-..+++||+.||+|+ +++..+ .++++|++|++|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHHHhccC
Confidence 455555555443322 2223334455555555555 344444 3355555555554443
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.11 E-value=2.9e-05 Score=76.21 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCCceEEEEeccCCCCC----C-C-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccc
Q 039689 373 FSKLMLLKFDNCGTCTS----L-P-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVD 436 (763)
Q Consensus 373 ~~~L~~L~l~~~~~~~~----l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 436 (763)
+++|+.|++++|..-.. + . .-...|.|+.|.+.+|.....-..... .+...-|.|+.|.+..
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la--~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA--ACMAEKPDLEKLNLNG 307 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH--HHHhcchhhHHhcCCc
Confidence 45667777777642111 0 0 112356677777666544322111000 0112256667776665
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.97 E-value=0.00097 Score=60.66 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=59.3
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccccccc--cccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 273 (763)
...-.+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+ ..+++|+.|.|.+ +++.++-+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceee
Confidence 45567888888877663 4778888899999888888886666 4556788888888 56665532 266777888888
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
+-+|.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 87776
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=6.7e-05 Score=83.34 Aligned_cols=84 Identities=18% Similarity=0.340 Sum_probs=42.0
Q ss_pred cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccC--C-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcc
Q 039689 558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFP--D-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLE 634 (763)
Q Consensus 558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 634 (763)
|+.|+++.|..++...-......+++|+.|.+.+|..++... . ....++|++|++++|..++..........+++|+
T Consensus 245 L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 245 LKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLR 324 (482)
T ss_pred cCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchh
Confidence 455555555544443333233336777777776676533321 1 2344667777777776653321111113456555
Q ss_pred eEeeccC
Q 039689 635 SLAIDSC 641 (763)
Q Consensus 635 ~L~l~~c 641 (763)
.+.+..+
T Consensus 325 ~l~~~~~ 331 (482)
T KOG1947|consen 325 ELKLLSL 331 (482)
T ss_pred hhhhhhc
Confidence 5544433
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=0.00017 Score=80.17 Aligned_cols=106 Identities=21% Similarity=0.380 Sum_probs=58.0
Q ss_pred cccccCceeeccCCchhh--h---------cceeeecc-CCCcccccc--hhhhcCCCCcceEEEecCccccccCC---C
Q 039689 539 DIRSLNRLQISRCPQLIS--L---------LRTVKIED-CNALESLPE--AWMHNSNSSLESLKIRSCNSLVSFPD---F 601 (763)
Q Consensus 539 ~l~~L~~L~l~~~~~l~~--~---------L~~L~l~~-~~~l~~l~~--~~~~~~l~~L~~L~l~~c~~l~~~~~---~ 601 (763)
..+.|+.|.+.+|..... . |++|++++ |......+. ......+++|+.|+++.|..+++..- .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777777655443 1 77777766 233322221 11222356677777776665333221 1
Q ss_pred CCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCc
Q 039689 602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSL 644 (763)
Q Consensus 602 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 644 (763)
...++|++|.+.+|..++...-......+++|++|+++.|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2245777777766765444333333356677777777777665
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.90 E-value=6.9e-05 Score=80.40 Aligned_cols=128 Identities=23% Similarity=0.179 Sum_probs=95.6
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCcccccccccC
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNS 275 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 275 (763)
..|.+-+.+.|.+..+-.++.-++.|+.|||++|.++..- .+..+++|++|||++ |.++.+|.- .... +|+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeec
Confidence 3567778888888888888999999999999999999885 889999999999999 689999863 2233 49999999
Q ss_pred CcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689 276 NVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD 332 (763)
Q Consensus 276 ~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 332 (763)
+|. ++.+-.+.+|+.|+ .|++..- -+... .....+..+..|+.|++.+|...
T Consensus 241 nN~-l~tL~gie~LksL~-~LDlsyN-ll~~h--seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNA-LTTLRGIENLKSLY-GLDLSYN-LLSEH--SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccH-HHhhhhHHhhhhhh-ccchhHh-hhhcc--hhhhHHHHHHHHHHHhhcCCccc
Confidence 998 88887777777777 4554331 00111 11123455678888888877543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.67 E-value=0.001 Score=75.01 Aligned_cols=87 Identities=29% Similarity=0.375 Sum_probs=67.1
Q ss_pred hhcc-CCCCcccEEEecCCCCCc--cCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccc--cccc
Q 039689 190 LQRL-LNLPRLRVFSLRGYNIFE--LPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLC--KDMG 264 (763)
Q Consensus 190 ~~~~-~~l~~Lr~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp--~~i~ 264 (763)
+..+ ..+|.||.|.+++-.+.. +..-..++++|+.||+|+++++.+ .+++.|++|++|.+.+ -.+..-. .++-
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHh
Confidence 4445 678999999998866432 334457889999999999999998 8899999999999987 3443322 2477
Q ss_pred CcccccccccCCcc
Q 039689 265 NLTKLHHLNNSNVG 278 (763)
Q Consensus 265 ~L~~L~~L~l~~~~ 278 (763)
+|++|++||+|...
T Consensus 218 ~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 218 NLKKLRVLDISRDK 231 (699)
T ss_pred cccCCCeeeccccc
Confidence 89999999998765
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0022 Score=58.39 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=69.6
Q ss_pred hhhccCCCCcccEEEecCCCCCccCccc-CCCCcccEEecCCCCchhcc--hhhhhcccccEEeeccccccccccc----
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAI-ENLKHLRFLDLSTTKIEILR--ESINTLYNLHTLLLEDCRRLKKLCK---- 261 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~L~~~~~l~~lp~---- 261 (763)
..+.|.+++.|.+|.+.+|+|+.+-..+ ..+++|..|.|.+|+|..+- ..+..++.|++|.+-+| .+..-+.
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeE
Confidence 3556788999999999999999995444 45678999999999998773 45678889999999884 4544432
Q ss_pred cccCcccccccccCCcc
Q 039689 262 DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 262 ~i~~L~~L~~L~l~~~~ 278 (763)
.+..+++|+.||+.+-.
T Consensus 135 vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEEecCcceEeehhhhh
Confidence 26788899999987654
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.56 E-value=0.00092 Score=37.69 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=8.4
Q ss_pred ccEEecCCCCchhcchhh
Q 039689 222 LRFLDLSTTKIEILRESI 239 (763)
Q Consensus 222 L~~L~L~~~~i~~lp~~~ 239 (763)
|++|||++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.0029 Score=61.09 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=100.8
Q ss_pred cceeeeccCCCcccccchh-hhcCCCCcceEEEecCccccccCCC-CCCCCccEEEEccCCCCCCCchhhhcCCCCCcce
Q 039689 558 LRTVKIEDCNALESLPEAW-MHNSNSSLESLKIRSCNSLVSFPDF-ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLES 635 (763)
Q Consensus 558 L~~L~l~~~~~l~~l~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 635 (763)
++++++.+ |.++...+-. +..++|.|+.|+++.|+.-..+... ....+|++|.+.+. .+..-...-+...+|.++.
T Consensus 73 v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 73 VKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhhhh
Confidence 55555555 5555443211 2235899999999654432223222 34468888888875 3332211111167788888
Q ss_pred EeeccCCCcccccc-----ccCCCCCcEEEEecCCCC----------CCCccceEEecCCCCCccccC-----CCCCCcC
Q 039689 636 LAIDSCDSLTYIAR-----IQLPPSLKRLIIFRCDNL----------RFNSLRKLKISGGCPDLVSSP-----RFPASLT 695 (763)
Q Consensus 636 L~l~~c~~l~~l~~-----~~~~~~L~~L~l~~c~~l----------~~~~L~~L~l~~~~~~l~~~~-----~~~~~L~ 695 (763)
|+++.| +++.+.. ..+.+.+++|+..+|... .|+++..+-+.. || ++... +.++.+.
T Consensus 151 lHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e-~P-lK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 151 LHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE-GP-LKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec-Cc-ccchhhcccCCCCCcch
Confidence 888877 4443322 223456777777777643 577777777755 43 11111 1345566
Q ss_pred eEeeccCCCCccccC--CCCCCCCcCceecccCCCCccccC
Q 039689 696 ELKISDMPSLERLSS--IGENLTSLKFLDLDNCPKLKYFSK 734 (763)
Q Consensus 696 ~L~l~~~~~l~~ip~--~~~~l~~L~~L~l~~c~~L~~l~~ 734 (763)
.|.++. +++.+..+ .+..|++|..|.+++.|-...+..
T Consensus 228 ~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 228 CLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 777777 55555432 347899999999999998877754
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.85 E-value=0.00056 Score=63.38 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=79.5
Q ss_pred hccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccc
Q 039689 191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH 270 (763)
Q Consensus 191 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 270 (763)
.++..++..++||++.|++..+-..|+.++.|.-||++.|.+..+|.+++.+..++.+++.. +.....|.+++.+++++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence 34567788999999999988888889999999999999999999999999999999999988 68999999999999999
Q ss_pred ccccCCcc
Q 039689 271 HLNNSNVG 278 (763)
Q Consensus 271 ~L~l~~~~ 278 (763)
.++..++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99998886
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0042 Score=34.96 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=18.8
Q ss_pred cccEEEecCCCCCccCcccCCC
Q 039689 198 RLRVFSLRGYNIFELPKAIENL 219 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp~~~~~l 219 (763)
+|++||+++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0054 Score=58.49 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=52.7
Q ss_pred CCcccEEEecCCCCCccCcccCCCCcccEEecCCC--Cch-hcchhhhhcccccEEeeccccccccccc--cccCccccc
Q 039689 196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTT--KIE-ILRESINTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLH 270 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~ 270 (763)
+..|..|++.+..++.+ ..|..|++|++|.+|.| ++. .++.-..++++|++|++++ +.+..+.. .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcchh
Confidence 44555555555555444 34567788888888888 544 4555556668888888888 45554211 156677788
Q ss_pred ccccCCcc
Q 039689 271 HLNNSNVG 278 (763)
Q Consensus 271 ~L~l~~~~ 278 (763)
.|++.+|.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 88888876
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.79 E-value=0.0039 Score=59.45 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=46.9
Q ss_pred cCCCCcccEEecCCCCchhcchhhhhcccccEEeeccc--cccccccccccCcccccccccCCccccccccc
Q 039689 216 IENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDC--RRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM 285 (763)
Q Consensus 216 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~ 285 (763)
.-.+..|+.|++.+..++++ ..+-.|++|+.|.++.| .....++.-...+++|++|++++|+ ++.+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lst 108 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLST 108 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccc
Confidence 44556677777777666654 23447889999999996 3334454445567999999999998 554433
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.0008 Score=64.12 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=54.2
Q ss_pred CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc--cccCcccccccc
Q 039689 196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHLN 273 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 273 (763)
+.+.+-|+..||.+.++ +...+|+.|++|.||-|.|+++ ..+...++|+.|.|.. +.+..+-+ .+.+|++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 45566677777777665 3345777788888887777777 4567777777777777 45555532 256777777777
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 77665
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0031 Score=60.29 Aligned_cols=79 Identities=28% Similarity=0.339 Sum_probs=63.3
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc--hhhhhcccccEEeecccccccccccc-----ccCc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR--ESINTLYNLHTLLLEDCRRLKKLCKD-----MGNL 266 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~L~~~~~l~~lp~~-----i~~L 266 (763)
.+++.|.+|.|+-|.|+.+ ..+.++++|+.|.|..|.|..+- ..+.+|++|++|-|..|.-...-+.. +.-|
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 6789999999999999988 55889999999999999999874 46789999999999887655554432 3445
Q ss_pred ccccccc
Q 039689 267 TKLHHLN 273 (763)
Q Consensus 267 ~~L~~L~ 273 (763)
++|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 6666554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.58 E-value=0.021 Score=29.73 Aligned_cols=14 Identities=50% Similarity=0.714 Sum_probs=4.6
Q ss_pred ccEEecCCCCchhc
Q 039689 222 LRFLDLSTTKIEIL 235 (763)
Q Consensus 222 L~~L~L~~~~i~~l 235 (763)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.72 E-value=0.047 Score=28.40 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=11.6
Q ss_pred CcccEEEecCCCCCccC
Q 039689 197 PRLRVFSLRGYNIFELP 213 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp 213 (763)
++||+|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.50 E-value=0.15 Score=30.02 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=12.4
Q ss_pred CCcccEEecCCCCchhcchh
Q 039689 219 LKHLRFLDLSTTKIEILRES 238 (763)
Q Consensus 219 l~~L~~L~L~~~~i~~lp~~ 238 (763)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35566666666666666544
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.50 E-value=0.15 Score=30.02 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=12.4
Q ss_pred CCcccEEecCCCCchhcchh
Q 039689 219 LKHLRFLDLSTTKIEILRES 238 (763)
Q Consensus 219 l~~L~~L~L~~~~i~~lp~~ 238 (763)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35566666666666666544
No 76
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.61 E-value=1.4 Score=53.19 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC-CccChHHHHH-HHHhcCCHhHHHHhhhhcccCC
Q 039689 24 EVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD-DKCDIIPALR-VSYHFLPPQLKQCFAYCSLFPK 101 (763)
Q Consensus 24 ~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~-~~~~i~~~l~-~Sy~~L~~~~k~~fl~~~~fp~ 101 (763)
+.+.++.+.|+|.|+++..++..+++.+... ...... ... +...+...+. -.|+.||++.+..++..|+++
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~- 278 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARR----LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR- 278 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHh----hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-
Confidence 4567899999999999999998876542210 011111 111 1234555544 348999999999999999986
Q ss_pred CCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccc-ccCCCCcceechhHHHHHHHHh
Q 039689 102 DHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQ-STYDASRFVMHDLINDLTRWAA 170 (763)
Q Consensus 102 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~mhdli~~~~~~~~ 170 (763)
.++.+ +...-. | . +.+...+++|.+++++.. .+++..++..|++++++.+...
T Consensus 279 --~~~~~-l~~~l~--~---~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 --SMNDA-LIVRVT--G---E--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --cCCHH-HHHHHc--C---C--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 23432 222111 1 1 124678999999999764 3333457889999999987654
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.18 E-value=0.74 Score=40.09 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeec
Q 039689 581 NSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAID 639 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 639 (763)
+++|+.+.+.+ .+..++. +...++|+.+.+.+. +..++...+ ..+++++.+.+.
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F-~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAF-SNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTT-TT-TT-EEEEET
T ss_pred CCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeee-eccccccccccc
Confidence 45666666642 2444443 344556666666552 555554443 455566666664
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=0.043 Score=50.37 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689 602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY 646 (763)
Q Consensus 602 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 646 (763)
..+++++.|.+.+|..+....-..+....++|+.|+|++|+.|++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 334455555555555544444333334455555555555555544
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.65 E-value=1.3 Score=38.41 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=46.8
Q ss_pred ccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTK 268 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~ 268 (763)
.|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..++ ..|.+..+|+.+.+.+ .+..++.. +...++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 356777888888874 566674 56788888888888775 66664 4567777888888865 44445443 666788
Q ss_pred ccccccCC
Q 039689 269 LHHLNNSN 276 (763)
Q Consensus 269 L~~L~l~~ 276 (763)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 88887754
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=0.12 Score=47.53 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=46.6
Q ss_pred CcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-cccc-CcccccccccCCcccccccc--cCCCccCCCc
Q 039689 220 KHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMG-NLTKLHHLNNSNVGSLEEML--MLKSLVHLQG 294 (763)
Q Consensus 220 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~-~L~~L~~L~l~~~~~l~~l~--~l~~L~~L~~ 294 (763)
..++..|-+++.|... -+.+.+++.++.|.+.+|..+..-- +.++ -.++|+.|++++|..+++-. -+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr- 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR- 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH-
Confidence 4456666666666533 3455666667777777766554321 1122 23577777777776555422 244555555
Q ss_pred eeeecCccccc
Q 039689 295 TLEISRLENVK 305 (763)
Q Consensus 295 ~L~~~~~~~~~ 305 (763)
.|.+.++..+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 55555554443
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.00 E-value=0.47 Score=45.78 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=34.0
Q ss_pred hhhccCCCCcccEEEecCCCCCc-cC----cccCCCCcccEEecCCCCchh
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-LP----KAIENLKHLRFLDLSTTKIEI 234 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-lp----~~~~~l~~L~~L~L~~~~i~~ 234 (763)
+.+.+.+|++|...+||.|.+.. .| +-+.+-+.|.+|.+++|.+..
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 55666788999999999888653 33 445677888888888887653
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.89 E-value=0.061 Score=50.35 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCccccccccc-C
Q 039689 209 IFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM-L 286 (763)
Q Consensus 209 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~-l 286 (763)
++.+| ..+.....-++||++.|++..+-..|+.++.|..||++. +.+..+|.+++.+..++++++..|. ....|. .
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 567788899999999999999999999999999999998 7899999999999999999998886 555554 3
Q ss_pred CCccCCC
Q 039689 287 KSLVHLQ 293 (763)
Q Consensus 287 ~~L~~L~ 293 (763)
+.+++++
T Consensus 108 ~k~~~~k 114 (326)
T KOG0473|consen 108 KKEPHPK 114 (326)
T ss_pred cccCCcc
Confidence 4444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.51 E-value=0.58 Score=27.41 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=17.5
Q ss_pred CCcccEEEecCCCCCccCcc
Q 039689 196 LPRLRVFSLRGYNIFELPKA 215 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp~~ 215 (763)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46899999999999999854
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.51 E-value=0.58 Score=27.41 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=17.5
Q ss_pred CCcccEEEecCCCCCccCcc
Q 039689 196 LPRLRVFSLRGYNIFELPKA 215 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp~~ 215 (763)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46899999999999999854
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.18 E-value=1.2 Score=26.17 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=8.4
Q ss_pred CCcCceecccCCCCc
Q 039689 716 TSLKFLDLDNCPKLK 730 (763)
Q Consensus 716 ~~L~~L~l~~c~~L~ 730 (763)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.01 E-value=1.2 Score=26.04 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=11.4
Q ss_pred cccEEecCCCCchhcch
Q 039689 221 HLRFLDLSTTKIEILRE 237 (763)
Q Consensus 221 ~L~~L~L~~~~i~~lp~ 237 (763)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777776664
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.78 E-value=2.2 Score=24.35 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=7.6
Q ss_pred CcccEEecCCCCch
Q 039689 220 KHLRFLDLSTTKIE 233 (763)
Q Consensus 220 ~~L~~L~L~~~~i~ 233 (763)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666655
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.46 E-value=2 Score=25.21 Aligned_cols=16 Identities=44% Similarity=0.548 Sum_probs=9.6
Q ss_pred CcccEEecCCCCchhc
Q 039689 220 KHLRFLDLSTTKIEIL 235 (763)
Q Consensus 220 ~~L~~L~L~~~~i~~l 235 (763)
++|++|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.53 E-value=7.3 Score=23.28 Aligned_cols=14 Identities=50% Similarity=0.598 Sum_probs=9.8
Q ss_pred CcccEEecCCCCch
Q 039689 220 KHLRFLDLSTTKIE 233 (763)
Q Consensus 220 ~~L~~L~L~~~~i~ 233 (763)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777665
No 90
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=38.60 E-value=46 Score=29.48 Aligned_cols=38 Identities=18% Similarity=0.477 Sum_probs=27.4
Q ss_pred HHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 039689 3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGK 50 (763)
Q Consensus 3 ~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~ 50 (763)
|+..++.-+|.. ..|.++|++| |.|-|...+|++++.+
T Consensus 95 w~al~~i~~Gev-----~tY~~iA~~i-----G~PsaaRaVg~A~~~n 132 (178)
T KOG4062|consen 95 WDALCEIPYGEV-----STYGQIARRI-----GNPSAARAVGSAMAHN 132 (178)
T ss_pred HHHHhccCCCce-----eeHHHHHHHh-----CCcHHHHHHHHHHccC
Confidence 666666665532 3466777665 8899999999999765
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.36 E-value=31 Score=35.82 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC-CccChHHHHHHHHhcCCHhHHHHhh-hhcccCC
Q 039689 24 EVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD-DKCDIIPALRVSYHFLPPQLKQCFA-YCSLFPK 101 (763)
Q Consensus 24 ~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~-~~~~i~~~l~~Sy~~L~~~~k~~fl-~~~~fp~ 101 (763)
+.+..|++.|+|.|=.+..+...+ ..|..+... ..... ........+...|..|++..+..+. ....|+.
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 467888889999884443333321 223222111 00000 1123445556677888887777664 5566765
Q ss_pred CCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHH-HHHHCCCcccc
Q 039689 102 DHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVE-ELHSRSLFHQS 149 (763)
Q Consensus 102 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 149 (763)
+ .+..+.+.... |. ...+ ++..++ .|++.+|++.+
T Consensus 275 ~-~~~~~~~a~~l---g~-----~~~~----~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 275 G-PVGLDTLAAAL---GE-----ERDT----IEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred C-ceeHHHHHHHH---CC-----Ccch----HHHHhhHHHHHcCCcccC
Confidence 5 45555553221 11 1122 333455 78899999754
No 92
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=34.84 E-value=68 Score=23.66 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhcCCCC
Q 039689 22 LKEVGQKIAMKCKGLPLAAKTLGGLLRGKDD 52 (763)
Q Consensus 22 ~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~ 52 (763)
+..+--.|++.|+|++=-+.++-+.|+.+++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 5677889999999999999999999999865
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.48 E-value=50 Score=22.22 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=17.6
Q ss_pred CCcCceecccCCCCccccCCCcccccceeeecc
Q 039689 716 TSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDE 748 (763)
Q Consensus 716 ~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~ 748 (763)
+++++|.+.+.-+ +.+....+|++|+.|.+.+
T Consensus 12 ~~l~~L~~g~~fn-~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSSFN-QPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCccC-ccCCCCccCCCceEEEeeC
Confidence 4566666633221 3344556667777776643
No 94
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.50 E-value=1.7e+02 Score=34.11 Aligned_cols=76 Identities=24% Similarity=0.384 Sum_probs=54.7
Q ss_pred HHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccc-ccCCCCccee
Q 039689 80 VSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQ-STYDASRFVM 158 (763)
Q Consensus 80 ~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~m 158 (763)
--+|.||+++|..++-+|.++.= -..|.....+. +.|..++++|.+++++.. -++....+..
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg~-------------~ng~amLe~L~~~gLFl~~Ldd~~~Wfry 326 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRF----NDELCNALTGE-------------ENGQAMLEELERRGLFLQRLDDEGQWFRY 326 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhcC-------------CcHHHHHHHHHhCCCceeeecCCCceeeh
Confidence 44799999999998889888642 12333332221 347789999999999874 3456788999
Q ss_pred chhHHHHHHHHhcC
Q 039689 159 HDLINDLTRWAAGE 172 (763)
Q Consensus 159 hdli~~~~~~~~~~ 172 (763)
|.+..|+-+.....
T Consensus 327 H~LFaeFL~~r~~~ 340 (894)
T COG2909 327 HHLFAEFLRQRLQR 340 (894)
T ss_pred hHHHHHHHHhhhcc
Confidence 99999997765444
No 95
>PF13730 HTH_36: Helix-turn-helix domain
Probab=27.52 E-value=1.1e+02 Score=21.42 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=30.1
Q ss_pred cCCHhHHHHhhhhcccCCCCc--c-CHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCc
Q 039689 84 FLPPQLKQCFAYCSLFPKDHE--F-QKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLF 146 (763)
Q Consensus 84 ~L~~~~k~~fl~~~~fp~~~~--i-~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll 146 (763)
+|++.++.++.+++-|..+.. . +.+.+.. .. |.- +..+..++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~-~~--g~s---------~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAK-DL--GVS---------RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHH-HH--CcC---------HHHHHHHHHHHHHCcCC
Confidence 577778888887776643222 1 2222222 11 222 34577899999999875
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.64 E-value=32 Score=37.31 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred CCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEecc
Q 039689 469 CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHV 523 (763)
Q Consensus 469 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 523 (763)
+.|.+..+.+++|....+..++++. +..|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssls----------------q~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLS----------------QIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHH----------------Hhcchhheeecccc
Confidence 3556666666666544443333222 55677777777776
No 97
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=24.38 E-value=2.3e+02 Score=28.84 Aligned_cols=105 Identities=14% Similarity=0.044 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhccccc-CCccChHHHHHHHHhcCCHhHHHHhh-hhcccCC
Q 039689 24 EVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLA-DDKCDIIPALRVSYHFLPPQLKQCFA-YCSLFPK 101 (763)
Q Consensus 24 ~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~-~~~~~i~~~l~~Sy~~L~~~~k~~fl-~~~~fp~ 101 (763)
+....|++.|+|.|=.+..++.. .|..+......... ....++...+..+|..+++..+..+. ..+.+..
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~~--------~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~ 253 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLRR--------VRDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQG 253 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHHH--------HHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 45567777888887554444432 22222110000000 00112233345567888887776665 5566653
Q ss_pred CCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHH-HHHHCCCcccc
Q 039689 102 DHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVE-ELHSRSLFHQS 149 (763)
Q Consensus 102 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 149 (763)
+ .+..+++... .|.-. ..+..+++ .|++++|+...
T Consensus 254 ~-~~~~~~ia~~---lg~~~---------~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 254 G-PVGLKTLAAA---LGEDA---------DTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred C-cccHHHHHHH---hCCCc---------chHHHhhhHHHHHcCCcccC
Confidence 3 4554443321 12211 22455677 69999999754
No 98
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=24.27 E-value=3e+02 Score=22.55 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=44.5
Q ss_pred ChHHHHhh--hhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHh-cCCCChHHHHHHHhhhc
Q 039689 1 MHWECYQK--MTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLL-RGKDDPKDWENVLKTEV 64 (763)
Q Consensus 1 ~~~~lf~~--~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L-~~~~~~~~W~~~l~~~~ 64 (763)
|.|++=+. ..|+. +.+|.+.+..-|-+..++-.-.|+|+..+-+.= +.....+.|.-++++..
T Consensus 22 D~we~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 45665443 35654 457888899999999999999999999987653 33323567888887654
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.68 E-value=54 Score=35.68 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCcccEEecCCCCchhcc--hhh-hhcccccEEeeccccccccccccccCcc--cccccccCCcc
Q 039689 219 LKHLRFLDLSTTKIEILR--ESI-NTLYNLHTLLLEDCRRLKKLCKDMGNLT--KLHHLNNSNVG 278 (763)
Q Consensus 219 l~~L~~L~L~~~~i~~lp--~~~-~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~ 278 (763)
.+.+..++|++|++..+- .++ ..-++|++|+|++|......-.++.++. .|++|-+.||.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 344555556666554431 112 3456777777777422222222344433 56777777776
No 100
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=21.25 E-value=4.1 Score=44.41 Aligned_cols=160 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred ccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCch-----hcchhhhh----cccccEEeecccc----cccccc
Q 039689 199 LRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIE-----ILRESINT----LYNLHTLLLEDCR----RLKKLC 260 (763)
Q Consensus 199 Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~----L~~L~~L~L~~~~----~l~~lp 260 (763)
+++|++..|.++. +.+.+....+++.++++.|.+. .++..+.. ..++++|.+++|. ....+-
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Q ss_pred ccccCccc-ccccccCCccccccccc------CCCc-cCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689 261 KDMGNLTK-LHHLNNSNVGSLEEMLM------LKSL-VHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD 332 (763)
Q Consensus 261 ~~i~~L~~-L~~L~l~~~~~l~~l~~------l~~L-~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 332 (763)
..+...++ ++.|++..|. +..... +..+ ..++ .+.+....-...-.......+...+.++.+.+..|...
T Consensus 226 ~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~-~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLR-VLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhh-hhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Q ss_pred CCCCccHHHHhhcCCCCCCceEEEeeeC
Q 039689 333 AVEPKTETQVIDMLKPHQKLELTITGYG 360 (763)
Q Consensus 333 ~~~~~~~~~~l~~l~~l~~L~L~~~~~~ 360 (763)
..........+..-.++..+.+.-.++.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 331 (478)
T KOG4308|consen 304 DYGVELLLEALERKTPLLHLVLGGTGKG 331 (478)
T ss_pred cHHHHHHHHHhhhcccchhhhccccCcc
Done!