Query 039689
Match_columns 763
No_of_seqs 416 out of 3489
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 21:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.7E-39 1.9E-43 373.4 25.5 417 189-642 69-549 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.5E-36 1.5E-40 349.0 28.4 542 165-750 30-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.5E-34 2.2E-38 328.1 33.8 507 190-750 42-620 (680)
4 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-33 1.1E-37 317.8 25.8 486 197-750 32-556 (606)
5 3t6q_A CD180 antigen; protein- 100.0 1.7E-32 5.8E-37 312.0 29.7 501 189-750 27-558 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 8E-32 2.7E-36 310.7 35.6 517 189-749 19-594 (680)
7 2z81_A CD282 antigen, TOLL-lik 100.0 9.1E-31 3.1E-35 294.1 31.4 449 197-750 26-508 (549)
8 3t6q_A CD180 antigen; protein- 100.0 3.7E-31 1.3E-35 301.0 27.1 469 186-728 46-559 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-31 1.1E-35 301.4 25.0 464 189-728 48-557 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-30 7.3E-35 304.4 31.5 464 196-728 23-559 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 7.8E-30 2.7E-34 299.6 35.4 481 200-750 7-558 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-30 2.1E-34 287.3 24.9 431 187-729 40-510 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-29 3.9E-34 286.7 27.0 172 197-407 28-210 (570)
14 4eco_A Uncharacterized protein 100.0 4.9E-31 1.7E-35 299.3 14.0 337 231-650 194-584 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-29 8.4E-34 280.2 27.1 188 200-407 3-200 (520)
16 4eco_A Uncharacterized protein 100.0 1.9E-29 6.5E-34 286.3 21.5 441 197-753 81-633 (636)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-28 9.6E-33 279.3 28.3 497 197-750 52-578 (635)
18 1jl5_A Outer protein YOPM; leu 100.0 1.1E-28 3.8E-33 267.5 21.2 388 195-750 9-427 (454)
19 4ecn_A Leucine-rich repeat pro 100.0 1.8E-28 6.3E-33 282.3 23.1 375 197-649 323-823 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-27 8.4E-32 266.2 29.3 430 197-750 31-508 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-27 5.4E-32 265.6 26.2 426 223-750 3-479 (520)
22 2z63_A TOLL-like receptor 4, v 100.0 2.5E-27 8.5E-32 267.5 27.0 134 189-329 44-187 (570)
23 4ecn_A Leucine-rich repeat pro 100.0 2.1E-27 7.3E-32 273.5 24.3 443 220-726 323-837 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-26 3.6E-31 261.1 24.6 430 189-728 46-509 (562)
25 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-26 7.5E-31 263.6 24.3 111 187-300 66-182 (635)
26 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4.1E-31 251.5 20.1 380 213-750 5-407 (454)
27 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-26 1.3E-30 247.7 21.4 304 192-641 37-349 (457)
28 1o6v_A Internalin A; bacterial 99.9 1.9E-24 6.6E-29 236.6 25.3 98 196-299 45-142 (466)
29 1o6v_A Internalin A; bacterial 99.9 2.4E-24 8.3E-29 235.8 23.8 327 192-647 63-390 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 8.1E-24 2.8E-28 231.5 23.0 82 197-278 30-114 (455)
31 3v47_A TOLL-like receptor 5B a 99.9 5.7E-24 1.9E-28 232.7 19.4 371 200-664 13-405 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-23 5.9E-28 226.9 20.3 326 192-641 59-384 (457)
33 4fmz_A Internalin; leucine ric 99.9 2.7E-23 9.2E-28 218.5 19.9 87 194-285 41-127 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.6E-27 216.7 21.3 83 195-278 43-128 (390)
35 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.8E-27 213.8 19.0 66 215-284 39-104 (347)
36 2id5_A Lingo-1, leucine rich r 99.9 9.9E-22 3.4E-26 216.1 23.6 196 373-642 127-331 (477)
37 3oja_B Anopheles plasmodium-re 99.9 5E-22 1.7E-26 224.1 21.0 83 195-278 49-134 (597)
38 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.7E-26 209.6 21.6 60 218-278 43-104 (390)
39 2id5_A Lingo-1, leucine rich r 99.9 2.3E-21 7.8E-26 213.2 22.7 295 197-621 32-336 (477)
40 2a5y_B CED-4; apoptosis; HET: 99.9 2E-23 6.9E-28 231.7 5.8 163 1-175 297-473 (549)
41 3oja_B Anopheles plasmodium-re 99.9 3.9E-21 1.3E-25 216.8 21.8 60 218-278 49-110 (597)
42 4fcg_A Uncharacterized protein 99.8 2.6E-20 8.9E-25 193.1 14.4 227 195-481 79-311 (328)
43 1xku_A Decorin; proteoglycan, 99.8 2.5E-19 8.7E-24 186.5 21.1 83 197-283 31-115 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 3.8E-19 1.3E-23 185.3 20.4 84 197-284 33-118 (332)
45 3g06_A SSPH2 (leucine-rich rep 99.8 6.6E-19 2.3E-23 196.4 23.4 77 197-283 40-116 (622)
46 4fcg_A Uncharacterized protein 99.8 6.2E-20 2.1E-24 190.2 10.7 197 189-454 96-302 (328)
47 3ogk_B Coronatine-insensitive 99.8 4E-20 1.4E-24 209.5 8.1 85 194-278 70-175 (592)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-19 4.5E-24 186.7 9.8 82 197-278 50-136 (313)
49 2z80_A TOLL-like receptor 2, v 99.8 2.5E-18 8.5E-23 180.8 16.5 79 197-278 31-111 (353)
50 2ft3_A Biglycan; proteoglycan, 99.8 3E-18 1E-22 178.5 16.7 270 197-551 54-330 (332)
51 1xku_A Decorin; proteoglycan, 99.8 3.7E-18 1.3E-22 177.7 17.2 268 197-550 52-328 (330)
52 1ogq_A PGIP-2, polygalacturona 99.8 4.5E-19 1.5E-23 182.7 7.4 110 188-299 67-182 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.7 9.4E-17 3.2E-21 179.1 24.3 252 353-727 44-295 (622)
54 2z66_A Variable lymphocyte rec 99.7 2.1E-17 7.2E-22 170.0 15.0 100 197-299 28-134 (306)
55 3ogk_B Coronatine-insensitive 99.7 1.9E-18 6.4E-23 195.7 7.2 223 194-459 109-351 (592)
56 2p1m_B Transport inhibitor res 99.7 9.2E-19 3.1E-23 198.4 4.4 85 194-278 63-167 (594)
57 1z7x_W Ribonuclease inhibitor; 99.7 7.8E-20 2.7E-24 200.2 -4.4 81 197-278 3-96 (461)
58 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 174.2 20.2 77 199-278 56-134 (452)
59 2z80_A TOLL-like receptor 2, v 99.7 1.5E-17 5.1E-22 174.8 12.5 95 197-293 52-152 (353)
60 3zyj_A Leucine-rich repeat-con 99.7 1.3E-16 4.3E-21 173.1 20.0 76 200-278 46-123 (440)
61 3zyi_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 176.5 16.2 217 197-483 75-302 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 9.4E-17 3.2E-21 174.1 17.6 101 197-300 64-169 (440)
63 1z7x_W Ribonuclease inhibitor; 99.7 4.9E-19 1.7E-23 193.9 -1.9 87 193-281 24-126 (461)
64 3o53_A Protein LRIM1, AGAP0063 99.7 6.3E-18 2.1E-22 174.6 5.6 76 567-647 201-278 (317)
65 1ozn_A Reticulon 4 receptor; N 99.7 1E-16 3.5E-21 163.0 13.5 76 200-278 14-91 (285)
66 1ozn_A Reticulon 4 receptor; N 99.7 2.2E-16 7.7E-21 160.4 14.8 83 196-278 31-116 (285)
67 2z66_A Variable lymphocyte rec 99.7 2.2E-16 7.5E-21 162.4 13.9 81 200-284 10-94 (306)
68 1vt4_I APAF-1 related killer D 99.7 5.2E-17 1.8E-21 182.5 8.9 133 1-166 302-436 (1221)
69 3sfz_A APAF-1, apoptotic pepti 99.7 1E-16 3.6E-21 197.9 12.1 154 1-173 290-452 (1249)
70 1wwl_A Monocyte differentiatio 99.7 3E-17 1E-21 169.0 6.0 82 194-278 40-132 (312)
71 3oja_A Leucine-rich immune mol 99.7 2.4E-16 8.3E-21 172.3 12.2 69 567-640 201-271 (487)
72 2p1m_B Transport inhibitor res 99.6 2.9E-17 9.9E-22 186.0 3.3 78 201-278 47-141 (594)
73 2xwt_C Thyrotropin receptor; s 99.6 4.8E-16 1.6E-20 153.4 10.0 96 197-293 31-130 (239)
74 1wwl_A Monocyte differentiatio 99.6 1.9E-15 6.5E-20 155.5 11.7 199 195-407 93-306 (312)
75 1h6u_A Internalin H; cell adhe 99.6 2E-15 6.8E-20 154.8 11.8 189 194-436 38-226 (308)
76 2z62_A TOLL-like receptor 4, v 99.6 4.1E-15 1.4E-19 150.3 13.0 198 197-408 28-235 (276)
77 3rfs_A Internalin B, repeat mo 99.6 6.4E-15 2.2E-19 148.3 14.1 203 194-452 38-245 (272)
78 2xwt_C Thyrotropin receptor; s 99.6 1.5E-14 5E-19 142.7 16.4 197 513-752 31-239 (239)
79 3o53_A Protein LRIM1, AGAP0063 99.6 3.5E-15 1.2E-19 153.9 9.7 240 189-482 26-273 (317)
80 2o6q_A Variable lymphocyte rec 99.6 2.7E-14 9.4E-19 143.5 16.0 77 199-278 18-96 (270)
81 1z6t_A APAF-1, apoptotic prote 99.6 4.3E-15 1.5E-19 167.5 10.3 151 1-170 290-449 (591)
82 1p9a_G Platelet glycoprotein I 99.6 3.1E-14 1E-18 144.4 15.2 195 193-437 6-205 (290)
83 2z62_A TOLL-like receptor 4, v 99.5 3.1E-14 1.1E-18 143.8 12.9 80 201-284 11-92 (276)
84 2o6q_A Variable lymphocyte rec 99.5 5.7E-14 2E-18 141.2 14.7 86 197-284 37-125 (270)
85 1p9a_G Platelet glycoprotein I 99.5 1.7E-13 5.7E-18 139.0 18.0 193 510-750 7-206 (290)
86 3oja_A Leucine-rich immune mol 99.5 5.3E-14 1.8E-18 153.8 14.5 212 447-728 31-249 (487)
87 4ay9_X Follicle-stimulating ho 99.5 4.4E-13 1.5E-17 140.2 19.6 237 353-661 13-253 (350)
88 4ay9_X Follicle-stimulating ho 99.5 4.2E-13 1.5E-17 140.3 19.4 220 470-748 29-255 (350)
89 1h6t_A Internalin B; cell adhe 99.5 4.7E-14 1.6E-18 143.2 10.8 100 194-299 43-142 (291)
90 4glp_A Monocyte differentiatio 99.5 7.3E-14 2.5E-18 143.6 11.4 133 196-332 90-237 (310)
91 1h6u_A Internalin H; cell adhe 99.5 9E-14 3.1E-18 142.5 12.0 172 192-409 58-229 (308)
92 3m19_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 133.1 14.3 78 198-278 15-94 (251)
93 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.7E-18 131.1 9.8 152 194-408 41-192 (197)
94 3rfs_A Internalin B, repeat mo 99.5 1.8E-13 6.3E-18 137.6 10.9 177 191-413 57-238 (272)
95 1m9s_A Internalin B; cell inva 99.4 2.4E-13 8.1E-18 151.5 10.2 169 194-408 40-208 (605)
96 4glp_A Monocyte differentiatio 99.4 1.6E-12 5.5E-17 133.5 14.1 198 512-750 90-305 (310)
97 1xeu_A Internalin C; cellular 99.4 5.6E-13 1.9E-17 132.9 8.3 86 193-284 37-122 (263)
98 2o6s_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 123.1 12.4 65 373-452 123-188 (208)
99 2ast_B S-phase kinase-associat 99.4 9.4E-14 3.2E-18 144.8 1.8 204 197-436 70-281 (336)
100 2ca6_A RAN GTPase-activating p 99.4 1.1E-14 3.9E-19 154.8 -5.5 89 189-278 24-133 (386)
101 2ast_B S-phase kinase-associat 99.4 1.5E-14 5.3E-19 150.8 -4.8 126 198-329 48-178 (336)
102 3m19_A Variable lymphocyte rec 99.4 1.4E-11 4.7E-16 122.2 16.6 165 559-750 17-190 (251)
103 3cvr_A Invasion plasmid antige 99.3 4E-12 1.4E-16 140.0 13.7 79 197-285 59-137 (571)
104 1xeu_A Internalin C; cellular 99.3 4.1E-13 1.4E-17 134.0 4.6 93 195-293 17-109 (263)
105 1h6t_A Internalin B; cell adhe 99.3 4.4E-12 1.5E-16 128.6 11.9 97 192-293 63-159 (291)
106 3e6j_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 122.6 12.0 75 201-278 23-99 (229)
107 3goz_A Leucine-rich repeat-con 99.3 3.5E-13 1.2E-17 141.7 3.0 93 188-282 13-123 (362)
108 2v9t_B SLIT homolog 2 protein 99.3 7.2E-12 2.5E-16 121.2 12.0 76 200-278 14-91 (220)
109 2o6s_A Variable lymphocyte rec 99.3 2.2E-12 7.5E-17 124.0 8.1 87 196-284 27-116 (208)
110 3goz_A Leucine-rich repeat-con 99.3 7.1E-13 2.4E-17 139.4 4.7 75 203-278 4-91 (362)
111 2v70_A SLIT-2, SLIT homolog 2 99.3 9.4E-12 3.2E-16 120.4 11.6 147 200-408 14-164 (220)
112 3cvr_A Invasion plasmid antige 99.3 3.2E-11 1.1E-15 132.8 15.4 176 472-728 60-242 (571)
113 2v9t_B SLIT homolog 2 protein 99.3 9.6E-12 3.3E-16 120.3 9.6 127 197-330 32-163 (220)
114 1m9s_A Internalin B; cell inva 99.3 4E-12 1.4E-16 141.6 7.7 184 199-436 23-206 (605)
115 4ezg_A Putative uncharacterize 99.3 8.9E-12 3.1E-16 118.4 8.5 131 192-330 61-192 (197)
116 1dce_A Protein (RAB geranylger 99.3 1.5E-13 5.2E-18 152.1 -4.4 160 216-408 345-519 (567)
117 2ca6_A RAN GTPase-activating p 99.2 5.6E-13 1.9E-17 141.7 -1.2 214 189-436 52-312 (386)
118 2ell_A Acidic leucine-rich nuc 99.2 1.1E-11 3.7E-16 114.5 7.0 132 194-330 21-158 (168)
119 3e6j_A Variable lymphocyte rec 99.2 2.7E-11 9.2E-16 118.0 9.8 129 197-332 40-172 (229)
120 2xot_A Amphoterin-induced prot 99.2 3E-11 1E-15 126.7 9.0 80 198-278 40-123 (361)
121 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4.2E-16 111.6 4.9 100 196-299 16-121 (149)
122 2v70_A SLIT-2, SLIT homolog 2 99.2 6E-11 2.1E-15 114.7 9.6 128 197-331 32-165 (220)
123 2je0_A Acidic leucine-rich nuc 99.2 2.9E-11 1E-15 109.1 6.5 93 189-284 34-129 (149)
124 4b8c_D Glucose-repressible alc 99.2 1.9E-11 6.4E-16 139.9 6.2 109 189-300 216-325 (727)
125 1w8a_A SLIT protein; signaling 99.1 1.1E-10 3.9E-15 110.1 9.8 80 198-278 30-113 (192)
126 2wfh_A SLIT homolog 2 protein 99.1 1.7E-10 5.8E-15 108.8 10.6 81 197-278 31-113 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.1 4E-11 1.4E-15 111.6 5.6 131 193-329 15-150 (176)
128 2ell_A Acidic leucine-rich nuc 99.1 7.6E-11 2.6E-15 108.8 6.8 109 189-301 41-157 (168)
129 2wfh_A SLIT homolog 2 protein 99.1 3.2E-10 1.1E-14 106.9 8.9 123 200-331 13-138 (193)
130 1dce_A Protein (RAB geranylger 99.1 2.1E-10 7E-15 127.1 8.6 82 198-283 442-523 (567)
131 2xot_A Amphoterin-induced prot 99.0 6E-10 2E-14 116.8 11.6 164 560-750 22-200 (361)
132 4b8c_D Glucose-repressible alc 99.0 4E-11 1.4E-15 137.1 2.8 65 213-278 217-281 (727)
133 1ds9_A Outer arm dynein; leuci 99.0 7.1E-12 2.4E-16 119.3 -4.5 106 190-300 41-149 (198)
134 1ds9_A Outer arm dynein; leuci 99.0 3.3E-12 1.1E-16 121.6 -7.1 83 198-283 24-108 (198)
135 1w8a_A SLIT protein; signaling 99.0 7.6E-10 2.6E-14 104.4 8.3 125 200-333 11-140 (192)
136 1a9n_A U2A', U2A'; complex (nu 99.0 3.4E-10 1.2E-14 105.2 5.7 101 196-300 41-149 (176)
137 2r9u_A Variable lymphocyte rec 99.0 8.4E-10 2.9E-14 102.1 7.1 81 197-278 33-116 (174)
138 2o6r_A Variable lymphocyte rec 98.9 2.9E-09 9.8E-14 99.0 10.3 86 197-284 28-116 (177)
139 3g39_A Variable lymphocyte rec 98.9 2.3E-09 7.7E-14 98.8 8.5 76 200-278 12-89 (170)
140 2r9u_A Variable lymphocyte rec 98.9 2.5E-09 8.4E-14 98.9 8.5 83 199-285 14-98 (174)
141 2o6r_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 98.6 8.9 125 199-332 9-137 (177)
142 3g39_A Variable lymphocyte rec 98.8 3.1E-09 1.1E-13 97.8 6.9 82 196-278 29-113 (170)
143 3sb4_A Hypothetical leucine ri 98.7 2E-08 6.7E-13 103.8 8.3 87 558-652 228-317 (329)
144 3sb4_A Hypothetical leucine ri 98.7 5.7E-08 1.9E-12 100.3 10.6 218 196-456 48-327 (329)
145 2ifg_A High affinity nerve gro 98.6 4.5E-08 1.6E-12 102.0 7.4 88 189-278 24-114 (347)
146 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.4E-12 98.5 7.7 83 200-285 11-97 (347)
147 4fdw_A Leucine rich hypothetic 98.4 1.3E-05 4.5E-10 84.4 18.9 79 192-275 131-211 (401)
148 4fs7_A Uncharacterized protein 98.4 1.4E-05 4.9E-10 84.4 19.4 64 209-275 59-125 (394)
149 4fs7_A Uncharacterized protein 98.3 1.3E-05 4.6E-10 84.7 17.8 32 373-406 161-194 (394)
150 4fdw_A Leucine rich hypothetic 98.2 1.4E-05 4.6E-10 84.3 14.9 196 190-436 151-354 (401)
151 3un9_A NLR family member X1; l 98.2 2.6E-07 8.8E-12 96.5 0.5 81 197-278 72-166 (372)
152 3e4g_A ATP synthase subunit S, 98.1 7.5E-06 2.6E-10 74.0 7.9 119 163-281 25-153 (176)
153 3un9_A NLR family member X1; l 97.9 1.8E-06 6.2E-11 90.1 1.1 132 196-330 100-250 (372)
154 3e4g_A ATP synthase subunit S, 97.9 6E-06 2E-10 74.6 3.0 95 211-306 52-154 (176)
155 3rw6_A Nuclear RNA export fact 97.8 1.1E-05 3.7E-10 78.9 4.5 59 195-254 168-231 (267)
156 1io0_A Tropomodulin; LRR prote 97.7 2.6E-05 9E-10 72.4 5.2 90 188-278 27-134 (185)
157 2ra8_A Uncharacterized protein 97.6 5E-05 1.7E-09 78.5 5.7 58 581-641 251-317 (362)
158 2ra8_A Uncharacterized protein 97.5 0.00012 4.1E-09 75.6 7.5 129 581-726 171-317 (362)
159 3rw6_A Nuclear RNA export fact 97.5 1.4E-05 4.6E-10 78.2 -0.4 83 194-278 138-231 (267)
160 1io0_A Tropomodulin; LRR prote 97.3 8.4E-05 2.9E-09 68.9 2.8 89 189-278 57-162 (185)
161 4gt6_A Cell surface protein; l 97.2 0.016 5.4E-07 60.8 19.3 66 580-652 263-330 (394)
162 4gt6_A Cell surface protein; l 97.0 0.012 4.1E-07 61.8 15.7 100 373-482 264-368 (394)
163 4h09_A Hypothetical leucine ri 96.7 0.079 2.7E-06 55.1 19.0 66 581-652 239-306 (379)
164 4h09_A Hypothetical leucine ri 96.3 0.49 1.7E-05 49.0 22.3 127 581-734 216-349 (379)
165 3rfe_A Platelet glycoprotein I 95.8 0.0096 3.3E-07 51.0 5.2 52 200-253 11-65 (130)
166 3rfe_A Platelet glycoprotein I 94.4 0.024 8.3E-07 48.5 3.3 53 223-278 11-66 (130)
167 1pgv_A TMD-1, tropomodulin TMD 91.0 0.24 8.3E-06 45.3 5.1 83 194-277 38-136 (197)
168 1pgv_A TMD-1, tropomodulin TMD 89.5 0.13 4.6E-06 47.1 2.0 90 189-278 62-168 (197)
169 2fna_A Conserved hypothetical 87.7 2.1 7.3E-05 43.4 10.1 116 27-165 233-355 (357)
170 2qen_A Walker-type ATPase; unk 87.0 2.5 8.6E-05 42.7 10.2 119 24-165 226-347 (350)
171 1w5s_A Origin recognition comp 82.5 2 7E-05 44.7 7.1 125 23-162 239-387 (412)
172 1hqc_A RUVB; extended AAA-ATPa 70.2 5.4 0.00018 39.8 5.8 110 24-148 191-324 (324)
173 2v1u_A Cell division control p 28.5 1.6E+02 0.0054 29.5 8.7 109 25-149 227-351 (387)
174 2vda_B Maltoporin; sugar trans 25.6 30 0.001 18.9 1.2 19 32-50 7-25 (28)
175 1v54_E Cytochrome C oxidase po 22.7 2E+02 0.007 22.7 5.8 63 1-64 25-90 (109)
176 2qby_B CDC6 homolog 3, cell di 22.1 5.7E+02 0.02 25.1 13.2 109 24-149 222-339 (384)
177 2y69_E Cytochrome C oxidase su 20.9 2.7E+02 0.0092 23.3 6.5 63 1-64 68-133 (152)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.7e-39 Score=373.37 Aligned_cols=417 Identities=18% Similarity=0.130 Sum_probs=251.4
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCch-hcch--hhhhcccccEEeeccccccccccccc-c
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIE-ILRE--SINTLYNLHTLLLEDCRRLKKLCKDM-G 264 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~--~~~~L~~L~~L~L~~~~~l~~lp~~i-~ 264 (763)
++.++.++++|+.++++.+.+..+|+.|+.+++|++|+|++|.++ .+|. .++++++|++|++++|.....+|..+ +
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 677888999999999999998778899999999999999999988 4677 89999999999999976666677665 8
Q ss_pred CcccccccccCCccccccccc-----CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccH
Q 039689 265 NLTKLHHLNNSNVGSLEEMLM-----LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTE 339 (763)
Q Consensus 265 ~L~~L~~L~l~~~~~l~~l~~-----l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 339 (763)
++++|++|++++|. +...+. +.++++|+ .+.+.+..-.. ...+..+++|+.|++++|......
T Consensus 149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~------~~~~~~l~~L~~L~Ls~n~l~~~~---- 216 (768)
T 3rgz_A 149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELK-HLAISGNKISG------DVDVSRCVNLEFLDVSSNNFSTGI---- 216 (768)
T ss_dssp CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCC-EEECCSSEEES------CCBCTTCTTCCEEECCSSCCCSCC----
T ss_pred cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCC-EEECCCCcccc------cCCcccCCcCCEEECcCCcCCCCC----
Confidence 89999999999997 554332 56777777 77776542211 112256777888888776543321
Q ss_pred HHHhhcCCCCCCc-eEEEeeeCCC-CCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccc
Q 039689 340 TQVIDMLKPHQKL-ELTITGYGGT-KFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEF 417 (763)
Q Consensus 340 ~~~l~~l~~l~~L-~L~~~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~ 417 (763)
..+..++.| .|++.++... .+|.++.. +++|+.|++++|...+.+|.. .+++|++|++++|.....++..+
T Consensus 217 ----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 217 ----PFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp ----CBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCS
T ss_pred ----cccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHH
Confidence 124555666 6666666554 34555554 677777777777655555544 66777777777665443333222
Q ss_pred cCCCcCCCCCCcceeeccccchhhhcCCCC---cCCcccEEEEecCcc---hhh-cCCCCCcccEEEEecCCccc-cc--
Q 039689 418 YGSSCSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCEQ---LLV-TLQCLPALRELEIDGCKGVV-LS-- 487 (763)
Q Consensus 418 ~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~-~l~~l~~L~~L~l~~~~~~~-~~-- 487 (763)
.+ .+++|++|++.+ +.+.+.+|. .+++|++|++.+|.. ++. .+..+++|++|++++|.... .+
T Consensus 290 ~~-----~~~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 290 SG-----ACDTLTGLDLSG--NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp CT-----TCTTCSEEECCS--SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred Hh-----hcCcCCEEECcC--CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 11 136666666665 334334442 455666666666642 222 25556666666666654321 11
Q ss_pred --C---------------------------CCccccceeccccch-hhhhhcCCCCCCceEEEeccCCccccccccCcCC
Q 039689 488 --S---------------------------PTDLSSLKLVHSRDM-AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP 537 (763)
Q Consensus 488 --~---------------------------~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p 537 (763)
. ++.++.|.+.++... .....+..+++|++|++++|.... .+|
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-------~~p 435 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-------TIP 435 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-------CCC
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-------ccc
Confidence 0 223333333333222 222223445555555555554322 222
Q ss_pred ---ccccccCceeeccCCchhh---------hcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCC
Q 039689 538 ---QDIRSLNRLQISRCPQLIS---------LLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALP 604 (763)
Q Consensus 538 ---~~l~~L~~L~l~~~~~l~~---------~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~ 604 (763)
..+++|+.|+++++.-... .|++|++++|...+.+|..+. .+++|++|++++|.....+|. +..+
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcC
Confidence 2334555566555432211 166666666544444554432 256666666666654445554 4555
Q ss_pred CCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCC
Q 039689 605 SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCD 642 (763)
Q Consensus 605 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 642 (763)
++|++|++++|...+.+|..+ ..+++|+.|++++|+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNL 549 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSE
T ss_pred CCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCc
Confidence 666666666665555666655 566666666666663
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-36 Score=348.99 Aligned_cols=542 Identities=17% Similarity=0.092 Sum_probs=373.2
Q ss_pred HHHHHhcCceEEecCCCCCcchhhhhhccCCCCcccEEEecCCCCCc----cCcccCCCCcccEEecCCCCchhcchhhh
Q 039689 165 LTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFE----LPKAIENLKHLRFLDLSTTKIEILRESIN 240 (763)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~----lp~~~~~l~~L~~L~L~~~~i~~lp~~~~ 240 (763)
++.|.....|+.|.|+.|. -.+++.|+|+++.+.. +|.++..+++|++++++.+.+..+|..|+
T Consensus 30 l~~W~~~~~~C~w~gv~C~------------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~ 97 (768)
T 3rgz_A 30 LPDWSSNKNPCTFDGVTCR------------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK 97 (768)
T ss_dssp STTCCTTSCGGGSTTEEEE------------TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCC
T ss_pred ccCCCCCCCCcCCcceEEC------------CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhc
Confidence 3556666677888776553 2478999999998765 78899999999999999999988889999
Q ss_pred hcccccEEeeccccccccccc--cccCcccccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhh--
Q 039689 241 TLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQ-- 314 (763)
Q Consensus 241 ~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~-- 314 (763)
++++|++|+|++|.....+|. .++++++|++|++++|.....+|. +.++++|+ .|++.+.. +.......
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~ 172 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE-VLDLSANS----ISGANVVGWV 172 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS-EEECCSSC----CEEETHHHHH
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC-EEECCCCc----cCCcCChhhh
Confidence 999999999999776667888 899999999999999973333343 36788888 88887632 23333333
Q ss_pred -hcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-
Q 039689 315 -LNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP- 391 (763)
Q Consensus 315 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~- 391 (763)
+.++++|+.|++++|......+ ...++.| .|++.++.....++.++. +++|++|++++|...+.+|
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD---------VSRCVNLEFLDVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB---------CTTCTTCCEEECCSSCCCSCCCBCTT--CCSCCEEECCSSCCCSCHHH
T ss_pred hhccCCCCCEEECCCCcccccCC---------cccCCcCCEEECcCCcCCCCCccccc--CCCCCEEECcCCcCCCcccH
Confidence 7889999999998886543221 2456777 888888877665555665 8999999999998766666
Q ss_pred CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCc----CCcccEEEEecCc---chh
Q 039689 392 SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPER----LLLLEKLNIFRCE---QLL 464 (763)
Q Consensus 392 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~----~~~L~~L~l~~~~---~l~ 464 (763)
.++.+++|++|++++|.....++. ..+++|++|++.+ +.+.+.+|.. +++|++|++.+|. ..+
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~--------~~l~~L~~L~L~~--n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPP--------LPLKSLQYLSLAE--NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCC--------CCCTTCCEEECCS--SEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred HHhcCCCCCEEECCCCcccCccCc--------cccCCCCEEECcC--CccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 789999999999999865443322 2488999999998 4555566643 4899999999996 345
Q ss_pred hcCCCCCcccEEEEecCCcc-c-----ccCCCccccceeccccch-hhhhhcCCCC-CCceEEEeccCCcccccc-----
Q 039689 465 VTLQCLPALRELEIDGCKGV-V-----LSSPTDLSSLKLVHSRDM-AKEVFEQGLP-KLERLEIQHVREQTYLWR----- 531 (763)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~-~-----~~~~~~L~~L~~~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~l~~l~~----- 531 (763)
..+..+++|++|++++|... . +..+++|+.|.+.++... ..+..+..++ +|++|++++|.....+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 56788999999999999764 2 335567777777665433 1111112222 566666666543221100
Q ss_pred ----------cc----CcCC---ccccccCceeeccCCchh---------hhcceeeeccCCCcccccchhhhcCCCCcc
Q 039689 532 ----------SE----TRLP---QDIRSLNRLQISRCPQLI---------SLLRTVKIEDCNALESLPEAWMHNSNSSLE 585 (763)
Q Consensus 532 ----------~~----~~~p---~~l~~L~~L~l~~~~~l~---------~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 585 (763)
.. +.+| ..+++|+.|+++++.-.. ..|+.|++++|...+.+|..+.. +++|+
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~ 469 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--VKTLE 469 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCC
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCce
Confidence 00 0222 234556666666543211 01677777776555556655332 67777
Q ss_pred eEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCcccccccc-CCCCCcEEEEec
Q 039689 586 SLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQ-LPPSLKRLIIFR 663 (763)
Q Consensus 586 ~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~ 663 (763)
+|++++|.....+|. +..+++|++|++++|...+.+|..+ ..+++|+.|++++|.....+|..- -.++|+.|++++
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 777777665545554 5666778888888876666777766 677888888888874433444321 246777777766
Q ss_pred CCCC----------------------------------------------------------------------------
Q 039689 664 CDNL---------------------------------------------------------------------------- 667 (763)
Q Consensus 664 c~~l---------------------------------------------------------------------------- 667 (763)
|.-.
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 5311
Q ss_pred --CCCccceEEecCCCCCcc-ccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccCC-Ccccc
Q 039689 668 --RFNSLRKLKISGGCPDLV-SSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQ-GLPKS 740 (763)
Q Consensus 668 --~~~~L~~L~l~~~~~~l~-~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~~~ 740 (763)
.+.+|+.|++++ +.+. .+|. .+++|+.|++++|..-..+|..++++++|++|++++|.--..+|.. .-.++
T Consensus 628 ~~~l~~L~~LdLs~--N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 628 FDNNGSMMFLDMSY--NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSSSBCCCEEECCS--SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhccccccEEECcC--CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 124567777776 3444 4444 5678888888886555688888888888888888887443356542 33468
Q ss_pred cceeeeccCh
Q 039689 741 LLRLIIDECP 750 (763)
Q Consensus 741 L~~L~i~~C~ 750 (763)
|+.|++++|+
T Consensus 706 L~~L~ls~N~ 715 (768)
T 3rgz_A 706 LTEIDLSNNN 715 (768)
T ss_dssp CSEEECCSSE
T ss_pred CCEEECcCCc
Confidence 8888888884
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.5e-34 Score=328.11 Aligned_cols=507 Identities=17% Similarity=0.153 Sum_probs=276.2
Q ss_pred hhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccc-ccccCc
Q 039689 190 LQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLC-KDMGNL 266 (763)
Q Consensus 190 ~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L 266 (763)
+..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+|. .|+++++|++|++++| .+..+| ..|+++
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 120 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTC
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHcccc
Confidence 33456667777777777776665 4566677777777777777776665 4677777777777774 445554 346777
Q ss_pred ccccccccCCcccccccc--cCCCccCCCceeeecCcccccCcccchhhhh--cCcccccceEEeeccCCCCCCccHHHH
Q 039689 267 TKLHHLNNSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGDASEVQL--NSKVNLKALYLQWGVRDAVEPKTETQV 342 (763)
Q Consensus 267 ~~L~~L~l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~ 342 (763)
++|++|++++|. +...+ .+.++++|+ .+.+.+.. +.......+ ..+++|+.|++++|......+. .
T Consensus 121 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~ 190 (680)
T 1ziw_A 121 KNLITLDLSHNG-LSSTKLGTQVQLENLQ-ELLLSNNK----IQALKSEELDIFANSSLKKLELSSNQIKEFSPG----C 190 (680)
T ss_dssp TTCCEEECCSSC-CSCCCCCSSSCCTTCC-EEECCSSC----CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT----G
T ss_pred CCCCEEECCCCc-ccccCchhhcccccCC-EEEccCCc----ccccCHHHhhccccccccEEECCCCcccccChh----h
Confidence 777777777765 44332 245566666 56555421 111222222 2345677777766543322211 0
Q ss_pred hhcCC------------------------CCCCc-eEEEeeeCCCCC-CCccCCCCCCCceEEEEeccCCCCCCC-CCCC
Q 039689 343 IDMLK------------------------PHQKL-ELTITGYGGTKF-PIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQ 395 (763)
Q Consensus 343 l~~l~------------------------~l~~L-~L~~~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~ 395 (763)
+..+. ..+.| .|.+.++..... |.++.....++|+.|++++|......+ .++.
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 270 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC
Confidence 11111 11344 555555544433 344433112347777777775443333 5677
Q ss_pred CCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccc----------hhhhcCCCCcCCcccEEEEecCcch--
Q 039689 396 LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDIC----------SKLQGTLPERLLLLEKLNIFRCEQL-- 463 (763)
Q Consensus 396 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~----------~~l~~~~~~~~~~L~~L~l~~~~~l-- 463 (763)
+++|++|+++++.........+. .+++|+.|++.+.. +.+.......+++|++|++.+|...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTTTT------TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccEeeCCCCccCccChhhhc------CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 77777777777655544443332 36777777776420 0011111235667777777776422
Q ss_pred -hhcCCCCCcccEEEEecCCccc--cc--C-----CCccccceeccccch-hhhhhcCCCCCCceEEEeccCCccccccc
Q 039689 464 -LVTLQCLPALRELEIDGCKGVV--LS--S-----PTDLSSLKLVHSRDM-AKEVFEQGLPKLERLEIQHVREQTYLWRS 532 (763)
Q Consensus 464 -~~~l~~l~~L~~L~l~~~~~~~--~~--~-----~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 532 (763)
+..+..+++|++|++++|.... .. . ...++.|.+.++... .....+..+++|+.|++++|....
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----- 419 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ----- 419 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE-----
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc-----
Confidence 2245667777777777664211 10 0 123333333333222 122233444555555555544322
Q ss_pred cCcCC----ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccc--cccCC-CCCCC
Q 039689 533 ETRLP----QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSL--VSFPD-FALPS 605 (763)
Q Consensus 533 ~~~~p----~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l--~~~~~-~~~~~ 605 (763)
.+| ..+++ |++|++++| .+..++...+. .+++|+.|++++|..- ..+|. +..++
T Consensus 420 --~~~~~~~~~l~~---------------L~~L~Ls~n-~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 420 --ELTGQEWRGLEN---------------IFEIYLSYN-KYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp --ECCSGGGTTCTT---------------CCEEECCSC-SEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred --ccCcccccCccc---------------ccEEecCCC-CcceeChhhhh-cCcccccchhccccccccccCCcccccCC
Confidence 111 11222 455555553 34444333222 3677777777665431 23343 45667
Q ss_pred CccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCcc
Q 039689 606 QLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLV 685 (763)
Q Consensus 606 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~ 685 (763)
+|++|++++|. ++.++...+ ..+++|+.|++++| .++.++...+|..-. .. --.+++|+.|++++ +.+.
T Consensus 481 ~L~~L~Ls~N~-l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~----~~--~~~l~~L~~L~L~~--N~l~ 549 (680)
T 1ziw_A 481 NLTILDLSNNN-IANINDDML-EGLEKLEILDLQHN-NLARLWKHANPGGPI----YF--LKGLSHLHILNLES--NGFD 549 (680)
T ss_dssp TCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCGGGGSTTSTTSCC----CT--TTTCTTCCEEECCS--SCCC
T ss_pred CCCEEECCCCC-CCcCChhhh-ccccccCEEeCCCC-CccccchhhccCCcc----hh--hcCCCCCCEEECCC--CCCC
Confidence 77777777763 444544322 56777777777776 555554333221000 00 00346777777775 4566
Q ss_pred ccCC----CCCCcCeEeeccCCCCccccCCC-CCCCCcCceecccCCCCccccCCC---cccccceeeeccCh
Q 039689 686 SSPR----FPASLTELKISDMPSLERLSSIG-ENLTSLKFLDLDNCPKLKYFSKQG---LPKSLLRLIIDECP 750 (763)
Q Consensus 686 ~~~~----~~~~L~~L~l~~~~~l~~ip~~~-~~l~~L~~L~l~~c~~L~~l~~~~---~~~~L~~L~i~~C~ 750 (763)
.+|. .+++|++|++++ +.++.+|... ..+++|++|++++| +++.++... ..++|+.|++++||
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 6664 467888888887 6778887664 77888888888886 677776642 23678888888765
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-33 Score=317.79 Aligned_cols=486 Identities=16% Similarity=0.116 Sum_probs=298.0
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-cccccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 273 (763)
+++++|++++|.++.++ ..|.++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+ |..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEE
Confidence 78999999999999885 5899999999999999999987 667899999999999995 46555 77899999999999
Q ss_pred cCCcccccccc--cCCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 274 NSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 274 l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
+++|. +..++ .++++++|+ .|.+.+.. +.. ..+..+.++++|+.|++++|........ .+..+..++
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~ 180 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLK-KLNVAHNF----IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN----DLQFLRENP 180 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCC-EEECCSSC----CCCCCCCGGGGTCTTCCEEECCSSCCCEECTT----TTHHHHHCT
T ss_pred ccCCc-cccccccccCCCCCCC-EEeCCCCc----ccceechHhHhhcCCCCEEEccCCcceecChh----hhhhhhccc
Confidence 99998 77666 378888888 88876632 221 2345788899999999988865433221 222333333
Q ss_pred C-c-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCC-CC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCC
Q 039689 351 K-L-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS-LP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSF 426 (763)
Q Consensus 351 ~-L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f 426 (763)
. + .+.+.++....+|..... ..+|+.|++++|..... ++ .++.++.|+.+.+............. .....+
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~---~~~~~~ 255 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI---FEPSIM 255 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC---CCGGGG
T ss_pred cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc---cChHHh
Confidence 3 3 677777777777766544 34899999999864321 22 45666777766654311110000000 000112
Q ss_pred CC-----cceeeccccchhhhcCCC--CcCCcccEEEEecCcc--hhhcCCCCCcccEEEEecCCcccccCCCcccccee
Q 039689 427 PS-----LETLFFVDICSKLQGTLP--ERLLLLEKLNIFRCEQ--LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKL 497 (763)
Q Consensus 427 ~~-----L~~L~l~~~~~~l~~~~~--~~~~~L~~L~l~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~ 497 (763)
.. ++.+.+.. .+.+.+..| ..+++|+.|++.++.. ++ .++.+++|++|++++|....++.+
T Consensus 256 ~~l~~l~l~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-------- 325 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTY-TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-------- 325 (606)
T ss_dssp TTGGGSEEEEEEECC-CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC--------
T ss_pred hhhhhccHhheeccc-cccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC--------
Confidence 22 33333322 123333332 4567888888887752 33 566677888888888865333311
Q ss_pred ccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchh-----------hhcceeeeccC
Q 039689 498 VHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLI-----------SLLRTVKIEDC 566 (763)
Q Consensus 498 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~-----------~~L~~L~l~~~ 566 (763)
.+++|++|++++|.....+ ....+++|+.|+++++.-.. ..|++|++++|
T Consensus 326 -------------~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 326 -------------DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp -------------CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred -------------CCCccceeeccCCcCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 3445555555555433211 00233444444444432100 00555555553
Q ss_pred CCcccccchhhhcCCCCcceEEEecCccccccC--CCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCc
Q 039689 567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFP--DFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSL 644 (763)
Q Consensus 567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 644 (763)
.++.+|..+. .+++|+.|++++|......| .+..+++|++|++++|......|..+ ..+++|+.|++++| .+
T Consensus 387 -~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l 460 (606)
T 3vq2_A 387 -GAIIMSANFM--GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGN-SF 460 (606)
T ss_dssp -SEEEECCCCT--TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTC-EE
T ss_pred -ccccchhhcc--CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCC-cC
Confidence 3555554322 36777777777665443333 35566777777777775555555555 66777777777777 33
Q ss_pred cc-cccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCCCCCCCcC
Q 039689 645 TY-IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIGENLTSLK 719 (763)
Q Consensus 645 ~~-l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~ 719 (763)
.. +....+. .+++|+.|++++ +.+..++. .+++|++|++++|......|..+..+++|+
T Consensus 461 ~~~~~~~~~~--------------~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 461 KDNTLSNVFA--------------NTTNLTFLDLSK--CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp GGGEECSCCT--------------TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred CCcchHHhhc--------------cCCCCCEEECCC--CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 32 2111111 345666666665 23333332 457888888888644444466778888888
Q ss_pred ceecccCCCCccccCC--CcccccceeeeccCh
Q 039689 720 FLDLDNCPKLKYFSKQ--GLPKSLLRLIIDECP 750 (763)
Q Consensus 720 ~L~l~~c~~L~~l~~~--~~~~~L~~L~i~~C~ 750 (763)
+|++++| +++.+|.. .++++|+.|++++||
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 8888886 57777763 333468888887754
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-32 Score=311.97 Aligned_cols=501 Identities=15% Similarity=0.117 Sum_probs=285.8
Q ss_pred hhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNL 266 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L 266 (763)
+|..+. +.+++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++|......|..++++
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 344443 3689999999999988 67899999999999999999877 7789999999999999964444457779999
Q ss_pred ccccccccCCcccccccc--cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhh
Q 039689 267 TKLHHLNNSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVID 344 (763)
Q Consensus 267 ~~L~~L~l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 344 (763)
++|++|++++|. +..++ .+.++++|+ .+.+.+.. +.......+..+++|+.|++++|.... .....+.
T Consensus 105 ~~L~~L~L~~n~-i~~l~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~ 174 (606)
T 3t6q_A 105 KALKHLFFIQTG-ISSIDFIPLHNQKTLE-SLYLGSNH----ISSIKLPKGFPTEKLKVLDFQNNAIHY----LSKEDMS 174 (606)
T ss_dssp TTCCEEECTTSC-CSCGGGSCCTTCTTCC-EEECCSSC----CCCCCCCTTCCCTTCCEEECCSSCCCE----ECHHHHH
T ss_pred ccccEeeccccC-cccCCcchhccCCccc-EEECCCCc----ccccCcccccCCcccCEEEcccCcccc----cChhhhh
Confidence 999999999997 76653 367778887 77776532 222222334447888888887764432 2233455
Q ss_pred cCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCC--CCcceecccCCceEeCccccCCCc
Q 039689 345 MLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPF--LKDPVISGMGRVKIVGSEFYGSSC 422 (763)
Q Consensus 345 ~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~--L~~L~l~~~~~l~~~~~~~~~~~~ 422 (763)
.+..++.+.+.+.++....+++.... ..+|+.|++++|..... .+..+.+ ++.+.+.......... . ....
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~--~~~~l~~~~l~~l~~~~~~~~~~~~--i-~~~~ 247 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLV--IFKGLKNSTIQSLWLGTFEDMDDED--I-SPAV 247 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCHHH--HHHHTTTCEEEEEECCCCTTSCCCC--C-CGGG
T ss_pred hhcccceeEEecCCCccCccChhHhh--hccccccccCCchhHHH--Hhhhccccchhheechhhccccccc--c-ChhH
Confidence 56666655666666666655544333 45777787777642110 0111111 1111111111110000 0 0000
Q ss_pred CCCC--CCcceeeccccchhhhcCCC---CcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccc-----cCCC
Q 039689 423 SVSF--PSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVL-----SSPT 490 (763)
Q Consensus 423 ~~~f--~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~-----~~~~ 490 (763)
...+ .+|+.|++.+ +.+.+..+ ..+++|++|++.+|. .++..+..+++|++|++++|..... ..++
T Consensus 248 ~~~l~~~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 248 FEGLCEMSVESINLQK--HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGSEEEEEECTT--CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred hchhhcCceeEEEeec--CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 0011 1456666655 22222222 345667777777664 3334455667777777777654332 1122
Q ss_pred ccccceeccccch--hhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCC
Q 039689 491 DLSSLKLVHSRDM--AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNA 568 (763)
Q Consensus 491 ~L~~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~ 568 (763)
+|+.|.+.++... .+...+..+++|++|++++|......... .....+++ |++|++++| .
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~---------------L~~L~l~~n-~ 387 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSH---------------LQSLNLSYN-E 387 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST--TTTTTCTT---------------CCEEECCSC-S
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc--hhcccCCC---------------CCEEECCCC-c
Confidence 2222222222111 11222344556666666655433210000 00012222 444555543 3
Q ss_pred cccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689 569 LESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY 646 (763)
Q Consensus 569 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 646 (763)
+..+++..+. .+++|++|++++|......+. +..+++|++|++++|......|..+ ..+++|+.|++++| .+..
T Consensus 388 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~ 463 (606)
T 3t6q_A 388 PLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGN-HFPK 463 (606)
T ss_dssp CEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTC-BCGG
T ss_pred CCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCC-CCCc
Confidence 3333332222 367777777776654333332 4566777777777775444444444 56777777777777 3332
Q ss_pred --ccc-ccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccC-C---CCCCcCeEeeccCCCCccccCCCCCCCCcC
Q 039689 647 --IAR-IQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSP-R---FPASLTELKISDMPSLERLSSIGENLTSLK 719 (763)
Q Consensus 647 --l~~-~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~-~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~ 719 (763)
++. ..+. .+++|+.|++++ +.+..++ . .+++|++|++++|......|..+..+++|
T Consensus 464 ~~~~~~~~~~--------------~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 464 GNIQKTNSLQ--------------TLGRLEILVLSF--CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp GEECSSCGGG--------------GCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred cccccchhhc--------------cCCCccEEECCC--CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 111 1110 345666666665 2344443 2 56789999999965555566677889999
Q ss_pred ceecccCCCCccccCCC--cccccceeeeccCh
Q 039689 720 FLDLDNCPKLKYFSKQG--LPKSLLRLIIDECP 750 (763)
Q Consensus 720 ~L~l~~c~~L~~l~~~~--~~~~L~~L~i~~C~ 750 (763)
+|++++| +++.++... ..++|+.|++++||
T Consensus 527 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 527 YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 9999997 577776543 23789999998875
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8e-32 Score=310.66 Aligned_cols=517 Identities=17% Similarity=0.140 Sum_probs=277.6
Q ss_pred hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccC
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~ 265 (763)
+|..+. +++++|++++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|.. |++
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAF 95 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChhhhcc
Confidence 344443 68999999999999986 5699999999999999999977 67899999999999999 478888874 999
Q ss_pred cccccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHh
Q 039689 266 LTKLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVI 343 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 343 (763)
+++|++|++++|. +..++. +.++++|+ .+++.+.. ........+.++++|+.|++++|....... ..+
T Consensus 96 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 165 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKNNPFVKQKNLI-TLDLSHNG----LSSTKLGTQVQLENLQELLLSNNKIQALKS----EEL 165 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCSCTTTTCTTCC-EEECCSSC----CSCCCCCSSSCCTTCCEEECCSSCCCCBCH----HHH
T ss_pred CCCCCEEECCCCc-cCccChhHccccCCCC-EEECCCCc----ccccCchhhcccccCCEEEccCCcccccCH----HHh
Confidence 9999999999998 777763 77888888 78776632 222333456778888888887764432211 111
Q ss_pred hcCCCCCCc-eEEEeeeCCCCCC-CccCCCCCCCceEEEEeccCCCCC----CCCCCCCCCCCcceecccCCceEeCccc
Q 039689 344 DMLKPHQKL-ELTITGYGGTKFP-IWLGDSLFSKLMLLKFDNCGTCTS----LPSVGQLPFLKDPVISGMGRVKIVGSEF 417 (763)
Q Consensus 344 ~~l~~l~~L-~L~~~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L~l~~~~~l~~~~~~~ 417 (763)
.. ...+.| .|++.++....++ .++.. +++|+.|++.++..... ++.....++|+.|+++++.........+
T Consensus 166 ~~-~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 166 DI-FANSSLKKLELSSNQIKEFSPGCFHA--IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp GG-GTTCEESEEECTTCCCCCBCTTGGGG--SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred hc-cccccccEEECCCCcccccChhhhhh--hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 11 112344 5555555444432 22322 34444444443321000 0000012344444444443322222221
Q ss_pred cCCCcCCCCCCcceeeccccchhhhcCCC---CcCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccccCCCc
Q 039689 418 YGSSCSVSFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVLSSPTD 491 (763)
Q Consensus 418 ~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 491 (763)
.+ ...++|++|++.+ +.+.+..| ..+++|++|++.+|.. .+..+..+++|++|++++|..........
T Consensus 243 ~~----l~~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 243 LG----LKWTNLTMLDLSY--NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp GG----GGGSCCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred hc----cCcCCCCEEECCC--CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 11 0012255555544 12221111 2334455555554431 11234445555555554432110000000
Q ss_pred cccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCc---------hh----hhc
Q 039689 492 LSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQ---------LI----SLL 558 (763)
Q Consensus 492 L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~---------l~----~~L 558 (763)
+.. .....+..+++|++|++++|...... ...-..+++|+.|+++++.. .. ..|
T Consensus 317 lp~---------i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 317 LPK---------IDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp CCE---------ECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred ccc---------cChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 000 00011233444444444444322100 00002233444444443310 00 015
Q ss_pred ceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689 559 RTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL 636 (763)
Q Consensus 559 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 636 (763)
+.|++++|. +..+++..+. .+++|+.|++++|.....+|. +..+++|++|++++|......+..+ ..+++|+.|
T Consensus 384 ~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L 459 (680)
T 1ziw_A 384 HILNLTKNK-ISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRL 459 (680)
T ss_dssp CEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEE
T ss_pred ceEECCCCC-CCeEChhhhh-CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccc
Confidence 555555533 3333222121 255666666655544333432 4455566666666654322223333 455566666
Q ss_pred eeccCCCcc---ccccc-cCCCCCcEEEEecCCCC--------CCCccceEEecCCCCCccccC------------CCCC
Q 039689 637 AIDSCDSLT---YIARI-QLPPSLKRLIIFRCDNL--------RFNSLRKLKISGGCPDLVSSP------------RFPA 692 (763)
Q Consensus 637 ~l~~c~~l~---~l~~~-~~~~~L~~L~l~~c~~l--------~~~~L~~L~l~~~~~~l~~~~------------~~~~ 692 (763)
++++| .++ .+|.. .-.++|+.|++++|.-- .+++|+.|++++ +.+..++ ..++
T Consensus 460 ~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 460 MLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp ECTTS-CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred hhccc-cccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC--CCccccchhhccCCcchhhcCCC
Confidence 66655 222 11111 11345556655554311 356677777776 3444331 2467
Q ss_pred CcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCccccCCC--cccccceeeeccC
Q 039689 693 SLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFSKQG--LPKSLLRLIIDEC 749 (763)
Q Consensus 693 ~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~~l~~~~--~~~~L~~L~i~~C 749 (763)
+|++|++++ +.++.+|.. +..+++|++|+++++ +++.++... ..++|+.|++++|
T Consensus 537 ~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 537 HLHILNLES-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCEEECCC-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 999999999 588899875 589999999999885 789998753 3479999999998
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=9.1e-31 Score=294.08 Aligned_cols=449 Identities=19% Similarity=0.203 Sum_probs=241.2
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
+.|++|++++|.++.+ |..|..+++|++|+|++|.++.++ ..|+++++|++|++++| .+..+|+. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 6899999999999887 578999999999999999999875 67899999999999995 66666655 99999999999
Q ss_pred cCCcccccccc---cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 274 NSNVGSLEEML---MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 274 l~~~~~l~~l~---~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
+++|. +..++ .++++++|+ .|.+.+.... .......+.++++|+.|++++|
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~-~L~L~~n~~~---~~~~~~~~~~l~~L~~L~L~~n--------------------- 158 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQ-TLRIGNVETF---SEIRRIDFAGLTSLNELEIKAL--------------------- 158 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCC-EEEEEESSSC---CEECTTTTTTCCEEEEEEEEET---------------------
T ss_pred CCCCc-ccccchhhhhhccCCcc-EEECCCCccc---cccCHhhhhcccccCeeeccCC---------------------
Confidence 99997 54331 234444444 3433332111 1111122333333333333332
Q ss_pred CceEEEeeeCCCC-CCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689 351 KLELTITGYGGTK-FPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP 427 (763)
Q Consensus 351 ~L~L~~~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~ 427 (763)
.... .|.++.. +++|+.|++++|... .++ .++.+++|++|+++++...... +..
T Consensus 159 ---------~l~~~~~~~l~~--l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~-------- 215 (549)
T 2z81_A 159 ---------SLRNYQSQSLKS--IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQ---FSP-------- 215 (549)
T ss_dssp ---------TCCEECTTTTTT--CSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCC---CCC--------
T ss_pred ---------cccccChhhhhc--cccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccc---ccc--------
Confidence 1111 2333433 455555555555321 122 1223445555555543321110 000
Q ss_pred CcceeeccccchhhhcCCCCcCCcccEEEEecCcc-------hhhcCCCCCcccEEEEecCCcccccCCCccccceeccc
Q 039689 428 SLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQ-------LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHS 500 (763)
Q Consensus 428 ~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~-------l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~ 500 (763)
..+...+++|+.|++.++.. +...+..+++|+.+++++|.......+...
T Consensus 216 ---------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-------- 272 (549)
T 2z81_A 216 ---------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-------- 272 (549)
T ss_dssp ---------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC--------
T ss_pred ---------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc--------
Confidence 01112344555555555431 111233455666666665543222111000
Q ss_pred cchhhhhhcCCCCCCceEEEeccCCccccccccCcCC---ccccccCceeeccCCchhhhcceeeeccCCCcccccchhh
Q 039689 501 RDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP---QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWM 577 (763)
Q Consensus 501 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p---~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~ 577 (763)
.......+++|+.|.+.++........ ..++ ...++ |+.|++++ +.++.+|..++
T Consensus 273 ----~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~l~~~~~~~~~---------------L~~L~l~~-n~l~~ip~~~~ 330 (549)
T 2z81_A 273 ----ESDVVSELGKVETVTIRRLHIPQFYLF--YDLSTVYSLLEK---------------VKRITVEN-SKVFLVPCSFS 330 (549)
T ss_dssp ----TTTCCCCCTTCCEEEEESCBCSCGGGS--CCCCHHHHHSTT---------------CCEEEEES-SCCCCCCHHHH
T ss_pred ----chhhhhhhcccccccccccccchhhhc--ccchhhhhhccc---------------ceEEEecc-CccccCCHHHH
Confidence 000113345555555555432211000 0000 01112 33444444 33555555432
Q ss_pred hcCCCCcceEEEecCccccccC----CCCCCCCccEEEEccCCCCCCCch---hhhcCCCCCcceEeeccCCCccccccc
Q 039689 578 HNSNSSLESLKIRSCNSLVSFP----DFALPSQLRTVTIKGCDALESLPE---AWMQNSSTSLESLAIDSCDSLTYIARI 650 (763)
Q Consensus 578 ~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~ 650 (763)
. .+++|++|++++|.....+| .+..+++|++|++++| .++.++. .+ ..+++|+.|++++| .++.+|..
T Consensus 331 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~ 405 (549)
T 2z81_A 331 Q-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEIL--LTLKNLTSLDISRN-TFHPMPDS 405 (549)
T ss_dssp H-HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHG--GGCTTCCEEECTTC-CCCCCCSC
T ss_pred h-cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhh--hcCCCCCEEECCCC-CCccCChh
Confidence 2 25566666665554333221 1344455666666665 3344332 12 45566666666655 44444432
Q ss_pred c-CCCCCcEEEEecCCCC-----CCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecc
Q 039689 651 Q-LPPSLKRLIIFRCDNL-----RFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLD 724 (763)
Q Consensus 651 ~-~~~~L~~L~l~~c~~l-----~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~ 724 (763)
. .+++|+.|++++|.-- ...+|+.|++++ +.+..++..+++|++|++++ +.++.+|. ...+++|++|+++
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~--N~l~~~~~~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN--NNLDSFSLFLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp CCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCS--SCCSCCCCCCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECC
T ss_pred hcccccccEEECCCCCcccccchhcCCceEEECCC--CChhhhcccCChhcEEECCC-CccCcCCC-cccCccCCEEecC
Confidence 1 2445666666555421 124677777775 45666666778899999998 47788885 5678899999999
Q ss_pred cCCCCccccCC--CcccccceeeeccCh
Q 039689 725 NCPKLKYFSKQ--GLPKSLLRLIIDECP 750 (763)
Q Consensus 725 ~c~~L~~l~~~--~~~~~L~~L~i~~C~ 750 (763)
+| +++.++.. ...++|+.|++++||
T Consensus 482 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 482 RN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 86 67777664 234789999987765
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=3.7e-31 Score=300.98 Aligned_cols=469 Identities=13% Similarity=0.136 Sum_probs=302.2
Q ss_pred hhhhhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-ccc
Q 039689 186 RQNVLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKD 262 (763)
Q Consensus 186 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~ 262 (763)
....+.+|.++++|++|++++|.+..+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+ |..
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~ 124 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIP 124 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSC
T ss_pred CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcch
Confidence 333567789999999999999999887 78899999999999999999877 778999999999999995 56666 667
Q ss_pred ccCcccccccccCCccccccc--ccCCCccCCCceeeecCcccccCcccchhhhhcCccccc--ceEEeeccCCCCCCc-
Q 039689 263 MGNLTKLHHLNNSNVGSLEEM--LMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLK--ALYLQWGVRDAVEPK- 337 (763)
Q Consensus 263 i~~L~~L~~L~l~~~~~l~~l--~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~- 337 (763)
++++++|++|++++|. +..+ |....+++|+ .+++.+. .+.......+..+++|+ .|++++|......+.
T Consensus 125 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLK-VLDFQNN----AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp CTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCC-EEECCSS----CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred hccCCcccEEECCCCc-ccccCcccccCCcccC-EEEcccC----cccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 9999999999999998 7665 6666688888 8887653 33444556677888888 566666543322111
Q ss_pred ---------------cHHHHhhcCCCCCCceEEEeeeCC---CCCCC-ccCCCCCCCceEEEEeccCCCCCCC-CCCCCC
Q 039689 338 ---------------TETQVIDMLKPHQKLELTITGYGG---TKFPI-WLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLP 397 (763)
Q Consensus 338 ---------------~~~~~l~~l~~l~~L~L~~~~~~~---~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~ 397 (763)
.....+..+.......+.+..... ..++. .+....-.+++.|++++|......+ .++.++
T Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 011111222211111222221111 11111 1111001278999999986544333 488999
Q ss_pred CCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCC---CcCCcccEEEEecCcch----hhcCCCC
Q 039689 398 FLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQL----LVTLQCL 470 (763)
Q Consensus 398 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~l----~~~l~~l 470 (763)
+|++|+++++... .++..+ ..+++|++|++.+ +.+.+..| ..+++|++|++.+|... ...+..+
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l------~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGL------VGLSTLKKLVLSA--NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSC------CSCTTCCEEECTT--CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CCCEEeccCCccC-CCChhh------cccccCCEEECcc--CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 9999999997543 343333 3478999999987 33333222 46789999999998633 2247789
Q ss_pred CcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeecc
Q 039689 471 PALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISR 550 (763)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~ 550 (763)
++|++|++++|........ ...+..+++|++|++++|.... ..|..+..+..
T Consensus 350 ~~L~~L~l~~n~l~~~~~~----------------~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~----- 401 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCC----------------NLQLRNLSHLQSLNLSYNEPLS-------LKTEAFKECPQ----- 401 (606)
T ss_dssp TTCCEEECCSSCCCEEEES----------------TTTTTTCTTCCEEECCSCSCEE-------ECTTTTTTCTT-----
T ss_pred CcCCEEECCCCccccccCc----------------chhcccCCCCCEEECCCCcCCc-------CCHHHhcCCcc-----
Confidence 9999999999875543210 1123667889999999887543 22322222211
Q ss_pred CCchhhhcceeeeccCCCcccc-cchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCC-Cc--hhh
Q 039689 551 CPQLISLLRTVKIEDCNALESL-PEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALES-LP--EAW 625 (763)
Q Consensus 551 ~~~l~~~L~~L~l~~~~~l~~l-~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~-~~--~~~ 625 (763)
|+.|++++ +.+... +...+ ..+++|++|++++|......|. +..+++|++|++++|...+. ++ ..+
T Consensus 402 -------L~~L~l~~-n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 402 -------LELLDLAF-TRLKVKDAQSPF-QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp -------CSEEECTT-CCEECCTTCCTT-TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred -------CCeEECCC-CcCCCcccchhh-hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 44444444 334333 33312 3478889999988765444443 56778899999988855431 12 234
Q ss_pred hcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccC-C---CCCCcCeEeecc
Q 039689 626 MQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSP-R---FPASLTELKISD 701 (763)
Q Consensus 626 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~-~---~~~~L~~L~l~~ 701 (763)
..+++|+.|++++| .++.++...+. .+++|+.|++++ +.+...+ . .+++| +|++++
T Consensus 473 --~~l~~L~~L~Ls~n-~l~~~~~~~~~--------------~l~~L~~L~Ls~--N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 473 --QTLGRLEILVLSFC-DLSSIDQHAFT--------------SLKMMNHVDLSH--NRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp --GGCTTCCEEECTTS-CCCEECTTTTT--------------TCTTCCEEECCS--SCCCGGGGGGGTTCCSC-EEECCS
T ss_pred --ccCCCccEEECCCC-ccCccChhhhc--------------cccCCCEEECCC--CccCcCChhHhCccccc-EEECcC
Confidence 67888999999988 66665444332 234555555554 2333222 1 45677 888888
Q ss_pred CCCCccccC-CCCCCCCcCceecccCCC
Q 039689 702 MPSLERLSS-IGENLTSLKFLDLDNCPK 728 (763)
Q Consensus 702 ~~~l~~ip~-~~~~l~~L~~L~l~~c~~ 728 (763)
| .++.++. .+..+++|++|++++||-
T Consensus 533 N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 533 N-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp S-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred C-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 5 5555543 347788999999999864
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.3e-31 Score=301.38 Aligned_cols=464 Identities=18% Similarity=0.210 Sum_probs=253.0
Q ss_pred hhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccC
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~ 265 (763)
.+..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+| ..+++
T Consensus 48 ~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 126 (606)
T 3vq2_A 48 KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQ 126 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTT
T ss_pred ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCC
Confidence 444677888888888888888877 56788888888888888888877 777888888888888884 555555 55888
Q ss_pred cccccccccCCcccccc--ccc-CCCccCCCceeeecCcccccCcccchhhhhcCccccc----ceEEeeccCCCCCC--
Q 039689 266 LTKLHHLNNSNVGSLEE--MLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLK----ALYLQWGVRDAVEP-- 336 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~--l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~-- 336 (763)
+++|++|++++|. +.. +|. ++++++|+ .|.+.+.. +.......+..+++|+ .|++++|.......
T Consensus 127 l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 127 LITLKKLNVAHNF-IHSCKLPAYFSNLTNLV-HVDLSYNY----IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp CTTCCEEECCSSC-CCCCCCCGGGGTCTTCC-EEECCSSC----CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred CCCCCEEeCCCCc-ccceechHhHhhcCCCC-EEEccCCc----ceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 8888888888887 543 443 67777777 67665531 1122222233333222 34444332211110
Q ss_pred ------------------ccHHHHhhcCCCCCCceEEEeeeCCCC----CC-CccCCCCCCCceEEEEe-ccCCCCCCCC
Q 039689 337 ------------------KTETQVIDMLKPHQKLELTITGYGGTK----FP-IWLGDSLFSKLMLLKFD-NCGTCTSLPS 392 (763)
Q Consensus 337 ------------------~~~~~~l~~l~~l~~L~L~~~~~~~~~----~p-~~~~~~~~~~L~~L~l~-~~~~~~~l~~ 392 (763)
......+..+..++.+.+......... ++ .++....--.++.+++. .+...+.++.
T Consensus 201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence 011112222222222222222211110 00 00000000133444442 2222333444
Q ss_pred CCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCC-cCCcccEEEEecCcch-hhcCCCC
Q 039689 393 VGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPE-RLLLLEKLNIFRCEQL-LVTLQCL 470 (763)
Q Consensus 393 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~L~~L~l~~~~~l-~~~l~~l 470 (763)
+..+++|+.|+++++.... ++ . ...+++|++|++.++ .+ +.+|. .+++|++|++.+|... ...+..+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~-l~-~------l~~~~~L~~L~l~~n--~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY-LE-D------VPKHFKWQSLSIIRC--QL-KQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC-CC-C------CCTTCCCSEEEEESC--CC-SSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred cccCCCCCEEEecCccchh-hh-h------ccccccCCEEEcccc--cC-cccccCCCCccceeeccCCcCccchhhccC
Confidence 5566666666666644321 11 1 123556666666651 22 22332 4556666666666322 1234456
Q ss_pred CcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeecc
Q 039689 471 PALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISR 550 (763)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~ 550 (763)
++|++|++++|....... ....+..+++|++|++++|.... +|..+..+..
T Consensus 350 ~~L~~L~ls~n~l~~~~~----------------~~~~~~~~~~L~~L~L~~n~l~~--------~~~~~~~l~~----- 400 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGC----------------CSYSDLGTNSLRHLDLSFNGAII--------MSANFMGLEE----- 400 (606)
T ss_dssp TTCCEEECCSSCEEEEEE----------------CCHHHHCCSCCCEEECCSCSEEE--------ECCCCTTCTT-----
T ss_pred CCCCEEECcCCccCCCcc----------------hhhhhccCCcccEeECCCCcccc--------chhhccCCCC-----
Confidence 666666666654332110 02233567888888888887332 2222222211
Q ss_pred CCchhhhcceeeeccCCCcccccc-hhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCC-Cchhhhc
Q 039689 551 CPQLISLLRTVKIEDCNALESLPE-AWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALES-LPEAWMQ 627 (763)
Q Consensus 551 ~~~l~~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~-~~~~~~~ 627 (763)
|+.|++++ +.+..+++ ..+ ..+++|++|++++|......|. +..+++|++|++++|...+. +|..+
T Consensus 401 -------L~~L~l~~-n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-- 469 (606)
T 3vq2_A 401 -------LQHLDFQH-STLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-- 469 (606)
T ss_dssp -------CCEEECTT-SEEESTTTTTTT-TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--
T ss_pred -------CCeeECCC-CccCCccChhhh-hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--
Confidence 44444444 33444433 212 2378888888877765554554 56677888888888754442 45555
Q ss_pred CCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCcccc-CC---CCCCcCeEeeccCC
Q 039689 628 NSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSS-PR---FPASLTELKISDMP 703 (763)
Q Consensus 628 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~-~~---~~~~L~~L~l~~~~ 703 (763)
..+++|+.|++++| .++.++...+. .+++|+.|++++ +.+..+ |. .+++|++|++++ +
T Consensus 470 ~~l~~L~~L~Ls~n-~l~~~~~~~~~--------------~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~l~~-N 531 (606)
T 3vq2_A 470 ANTTNLTFLDLSKC-QLEQISWGVFD--------------TLHRLQLLNMSH--NNLLFLDSSHYNQLYSLSTLDCSF-N 531 (606)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTT--------------TCTTCCEEECCS--SCCSCEEGGGTTTCTTCCEEECTT-S
T ss_pred ccCCCCCEEECCCC-cCCccChhhhc--------------ccccCCEEECCC--CcCCCcCHHHccCCCcCCEEECCC-C
Confidence 67788888888887 55555433331 234455555554 223222 22 456788888888 4
Q ss_pred CCccccCCCCCCC-CcCceecccCCC
Q 039689 704 SLERLSSIGENLT-SLKFLDLDNCPK 728 (763)
Q Consensus 704 ~l~~ip~~~~~l~-~L~~L~l~~c~~ 728 (763)
.++.+|..+..++ +|++|++++||-
T Consensus 532 ~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 532 RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCcccCHhHhhhcccCcEEEccCCCc
Confidence 5778887777776 588888888654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=304.44 Aligned_cols=464 Identities=16% Similarity=0.121 Sum_probs=265.9
Q ss_pred CCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCC-chhc-chhhhhcccccEEeeccccccccccccccCccccccc
Q 039689 196 LPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTK-IEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL 272 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 272 (763)
.+++++|+|++|.++.+ |..|.++++|++|+|++|. +..+ |.+|+++++|++|+|++|......|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46778888888887776 5778888888888888873 4455 6677888888888888854333346678888888888
Q ss_pred ccCCcccccc-ccc---CCCccCCCceeeecCcccccCcccc-hhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689 273 NNSNVGSLEE-MLM---LKSLVHLQGTLEISRLENVKGVGDA-SEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK 347 (763)
Q Consensus 273 ~l~~~~~l~~-l~~---l~~L~~L~~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 347 (763)
++++|. +.. ++. +.++++|+ .|+++...- ... ....+.++++|+.|+++.|.........-. .+.. .
T Consensus 103 ~Ls~n~-l~~~~~~~~~~~~L~~L~-~L~Ls~N~l----~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~-~ 174 (844)
T 3j0a_A 103 RLYFCG-LSDAVLKDGYFRNLKALT-RLDLSKNQI----RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQG-K 174 (844)
T ss_dssp ECTTCC-CSSCCSTTCCCSSCSSCC-EEEEESCCC----CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHH-C
T ss_pred eCcCCC-CCcccccCccccccCCCC-EEECCCCcc----cccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccC-C
Confidence 888876 443 332 66777777 777665321 111 223567778888888877755443322111 1110 2
Q ss_pred CCCCceEEEeeeCCCC-CCCccCCC----CCCCceEEEEeccCCCCCCC-------------------------------
Q 039689 348 PHQKLELTITGYGGTK-FPIWLGDS----LFSKLMLLKFDNCGTCTSLP------------------------------- 391 (763)
Q Consensus 348 ~l~~L~L~~~~~~~~~-~p~~~~~~----~~~~L~~L~l~~~~~~~~l~------------------------------- 391 (763)
.++ .|.+.++.... .|..+... ...+|+.|++++|......+
T Consensus 175 ~L~--~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 175 TLS--FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SSC--CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ccc--eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 222 33333332221 22222110 01136666666663221111
Q ss_pred ------CCCC--CCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCC---CcCCcccEEEEecC
Q 039689 392 ------SVGQ--LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRC 460 (763)
Q Consensus 392 ------~l~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~ 460 (763)
.+.. .++|+.|+++++.........| ..+++|+.|++.+ +.+.+..| ..+++|++|++++|
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF------ETLKDLKVLNLAY--NKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS------SSCCCCCEEEEES--CCCCEECTTTTTTCSSCCEEEEESC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhh------hcCCCCCEEECCC--CcCCCCChHHhcCCCCCCEEECCCC
Confidence 1122 2678888888876554443333 3378888888887 33333323 35678888888888
Q ss_pred cc---hhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC
Q 039689 461 EQ---LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP 537 (763)
Q Consensus 461 ~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p 537 (763)
.. .+..+..+++|++|++++|....... ..+..+++|++|++++|... .++
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------~~~~~l~~L~~L~Ls~N~l~--------~i~ 378 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQD------------------QTFKFLEKLQTLDLRDNALT--------TIH 378 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCS------------------SCSCSCCCCCEEEEETCCSC--------CCS
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccCh------------------hhhcCCCCCCEEECCCCCCC--------ccc
Confidence 62 23457778889999998886543221 01133444555555544322 111
Q ss_pred ccccccCceeeccCCc-----hhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC---CCCCCCccE
Q 039689 538 QDIRSLNRLQISRCPQ-----LISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD---FALPSQLRT 609 (763)
Q Consensus 538 ~~l~~L~~L~l~~~~~-----l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~ 609 (763)
.+++|+.|+++++.- ....++.|++++ +.++.++.......+++|+.|++++|.. ...+. ...+++|+.
T Consensus 379 -~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~ 455 (844)
T 3j0a_A 379 -FIPSIPDIFLSGNKLVTLPKINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQ 455 (844)
T ss_dssp -SCCSCSEEEEESCCCCCCCCCCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCB
T ss_pred -CCCCcchhccCCCCcccccccccccceeeccc-CccccCchhhhhhcCCccceeeCCCCcc-cccccccccccCCcccc
Confidence 133444444433210 001145555555 5566665443333578888888887664 33222 344678888
Q ss_pred EEEccCCCCC-----CCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCc
Q 039689 610 VTIKGCDALE-----SLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDL 684 (763)
Q Consensus 610 L~l~~~~~l~-----~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l 684 (763)
|++++|.... ..+..+ ..+++|+.|++++| .++.++...+. .+++|+.|++++ +.+
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~--------------~l~~L~~L~Ls~--N~l 516 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVF--EGLSHLQVLYLNHN-YLNSLPPGVFS--------------HLTALRGLSLNS--NRL 516 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCS--SCBCCEECCCCCHH-HHTTCCTTSSS--------------SCCSCSEEEEES--CCC
T ss_pred ccCCCCccccccccccchhhh--cCcccccEEECCCC-cccccChhHcc--------------chhhhheeECCC--CCC
Confidence 8888884431 112233 67788888888888 67666655442 345566666665 455
Q ss_pred cccCC--CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCC
Q 039689 685 VSSPR--FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPK 728 (763)
Q Consensus 685 ~~~~~--~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~ 728 (763)
..+|. .+++|+.|++++| .++.++.. .+++|+.|+++++|-
T Consensus 517 ~~l~~~~~~~~L~~L~Ls~N-~l~~~~~~--~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 517 TVLSHNDLPANLEILDISRN-QLLAPNPD--VFVSLSVLDITHNKF 559 (844)
T ss_dssp SSCCCCCCCSCCCEEEEEEE-CCCCCCSC--CCSSCCEEEEEEECC
T ss_pred CccChhhhhccccEEECCCC-cCCCCChh--HhCCcCEEEecCCCc
Confidence 55554 4467888888884 55544432 356788888877653
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=299.64 Aligned_cols=481 Identities=19% Similarity=0.121 Sum_probs=315.9
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 277 (763)
++.+.++++++.+|. -.++|++|+|++|.|+.+ |.+|+++++|++|+|++|.....+ |..|+++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 577888999999997 568999999999999977 788999999999999998777787 667999999999999999
Q ss_pred cccccc-c-cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eE
Q 039689 278 GSLEEM-L-MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-EL 354 (763)
Q Consensus 278 ~~l~~l-~-~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L 354 (763)
. +..+ | .+.++++|+ .|.+.+..-.... .....+.++++|+.|++++|........ ..+..++.| .|
T Consensus 84 ~-l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~--~~~~~~~~L~~L~~L~Ls~N~l~~~~~~------~~~~~L~~L~~L 153 (844)
T 3j0a_A 84 K-IYFLHPDAFQGLFHLF-ELRLYFCGLSDAV--LKDGYFRNLKALTRLDLSKNQIRSLYLH------PSFGKLNSLKSI 153 (844)
T ss_dssp C-CCEECTTSSCSCSSCC-CEECTTCCCSSCC--STTCCCSSCSSCCEEEEESCCCCCCCCC------GGGGTCSSCCEE
T ss_pred c-CcccCHhHccCCcccC-EeeCcCCCCCccc--ccCccccccCCCCEEECCCCcccccccc------hhHhhCCCCCEE
Confidence 8 6665 3 378888888 8888764221111 1122478899999999999866543221 234566777 78
Q ss_pred EEeeeCCCCC-CCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCC------CCcceecccCCceEeCccccCC------
Q 039689 355 TITGYGGTKF-PIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPF------LKDPVISGMGRVKIVGSEFYGS------ 420 (763)
Q Consensus 355 ~~~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~------L~~L~l~~~~~l~~~~~~~~~~------ 420 (763)
++.++..... |..+.....++|+.|++++|......+ .++.+++ |+.|+++++.........+...
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 8887766553 444433111789999999998766555 4555544 9999999874321111111000
Q ss_pred ------------------------CcCC--CCCCcceeeccccchhhhcCC---CCcCCcccEEEEecCcc---hhhcCC
Q 039689 421 ------------------------SCSV--SFPSLETLFFVDICSKLQGTL---PERLLLLEKLNIFRCEQ---LLVTLQ 468 (763)
Q Consensus 421 ------------------------~~~~--~f~~L~~L~l~~~~~~l~~~~---~~~~~~L~~L~l~~~~~---l~~~l~ 468 (763)
..+. ..++|+.|++.+ +.+.+.. ...+++|+.|++.+|.. .+..+.
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH--GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT--CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCC--CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence 0001 136899999987 3333222 34678999999999863 234678
Q ss_pred CCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceee
Q 039689 469 CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQI 548 (763)
Q Consensus 469 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l 548 (763)
.+++|++|++++|....... ..+..+++|+.|++++|.... +.. ..-..+++|+.|++
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~------------------~~~~~l~~L~~L~L~~N~i~~-~~~---~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYS------------------SNFYGLPKVAYIDLQKNHIAI-IQD---QTFKFLEKLQTLDL 369 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCS------------------CSCSSCTTCCEEECCSCCCCC-CCS---SCSCSCCCCCEEEE
T ss_pred CCCCCCEEECCCCCCCccCH------------------HHhcCCCCCCEEECCCCCCCc-cCh---hhhcCCCCCCEEEC
Confidence 89999999999997543211 123668999999999996432 100 01134566666666
Q ss_pred ccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcC
Q 039689 549 SRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQN 628 (763)
Q Consensus 549 ~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 628 (763)
++ +.++.++. +++|+.|++++|. +..+|.. ..+++.|++++| .++.++......
T Consensus 370 s~----------------N~l~~i~~------~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~N-~l~~l~~~~~~~ 423 (844)
T 3j0a_A 370 RD----------------NALTTIHF------IPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSEN-RLENLDILYFLL 423 (844)
T ss_dssp ET----------------CCSCCCSS------CCSCSEEEEESCC-CCCCCCC--CTTCCEEECCSC-CCCSSTTHHHHT
T ss_pred CC----------------CCCCcccC------CCCcchhccCCCC-ccccccc--ccccceeecccC-ccccCchhhhhh
Confidence 65 33443332 4556666665543 3344432 345556666655 333333221114
Q ss_pred CCCCcceEeeccCCCcccccccc---CCCCCcEEEEecCCCC-------------CCCccceEEecCCCCCccccCC---
Q 039689 629 SSTSLESLAIDSCDSLTYIARIQ---LPPSLKRLIIFRCDNL-------------RFNSLRKLKISGGCPDLVSSPR--- 689 (763)
Q Consensus 629 ~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~l-------------~~~~L~~L~l~~~~~~l~~~~~--- 689 (763)
.+++|+.|++++| .++.++... ..++|+.|+++++.-- .+++|+.|++++ +.+..++.
T Consensus 424 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~ 500 (844)
T 3j0a_A 424 RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH--NYLNSLPPGVF 500 (844)
T ss_dssp TCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH--HHHTTCCTTSS
T ss_pred cCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC--CcccccChhHc
Confidence 5556666666655 333332221 1345555555554310 357788888886 46666665
Q ss_pred -CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccCCCcccccceeeeccCh
Q 039689 690 -FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECP 750 (763)
Q Consensus 690 -~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~C~ 750 (763)
.+++|++|++++ +.++.+|..... ++|+.|++++| +++.++...+ ++|+.|+++++|
T Consensus 501 ~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N-~l~~~~~~~~-~~L~~l~l~~Np 558 (844)
T 3j0a_A 501 SHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRN-QLLAPNPDVF-VSLSVLDITHNK 558 (844)
T ss_dssp SSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEE-CCCCCCSCCC-SSCCEEEEEEEC
T ss_pred cchhhhheeECCC-CCCCccChhhhh-ccccEEECCCC-cCCCCChhHh-CCcCEEEecCCC
Confidence 568999999999 588888865544 89999999996 6777766544 589999998755
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.3e-30 Score=287.25 Aligned_cols=431 Identities=22% Similarity=0.227 Sum_probs=248.2
Q ss_pred hhhhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccc--ccccc
Q 039689 187 QNVLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLK--KLCKD 262 (763)
Q Consensus 187 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~--~lp~~ 262 (763)
...+..|.++++|++|++++|.++.++ ..|+.+++|++|+|++|.++.+|+. |+++++|++|++++| .+. ..|..
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 118 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL 118 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS
T ss_pred ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhh
Confidence 334567899999999999999999885 7899999999999999999988665 999999999999995 565 45678
Q ss_pred ccCcccccccccCCcccccccc--cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHH
Q 039689 263 MGNLTKLHHLNNSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTET 340 (763)
Q Consensus 263 i~~L~~L~~L~l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 340 (763)
++++++|++|++++|..+..++ .+..+++|+ .+.+.+. .+.......+..+++|+.|++.++..
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~l~~l~~L~~L~l~~n~~--------- 184 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKAL----SLRNYQSQSLKSIRDIHHLTLHLSES--------- 184 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEET----TCCEECTTTTTTCSEEEEEEEECSBS---------
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCC----cccccChhhhhccccCceEecccCcc---------
Confidence 9999999999999997667776 377888888 7777653 23334455677888899888876632
Q ss_pred HHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCC----CCCCCCCCCCCcceecccCCceEeCcc
Q 039689 341 QVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS----LPSVGQLPFLKDPVISGMGRVKIVGSE 416 (763)
Q Consensus 341 ~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L~l~~~~~l~~~~~~ 416 (763)
..+|.++.. .+++|+.|++++|...+. .+....+++|+.|+++++.........
T Consensus 185 ---------------------~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 185 ---------------------AFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ---------------------TTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ---------------------cccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 122222211 167788888888764332 223345677777777765321110000
Q ss_pred ccCCCcCCCCCCcceeeccccchhhhcCCCCcCCcccEEEEecCcch---------hhcCCCCCcccEEEEecCCccccc
Q 039689 417 FYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQL---------LVTLQCLPALRELEIDGCKGVVLS 487 (763)
Q Consensus 417 ~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l---------~~~l~~l~~L~~L~l~~~~~~~~~ 487 (763)
+. .....+++|+.+++.+ |... ...+..+++|+.|.+.++......
T Consensus 243 l~--~~~~~~~~L~~l~l~~-----------------------~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 243 LL--KLLRYILELSEVEFDD-----------------------CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp HH--GGGGGCTTCCEEEEES-----------------------CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred HH--HHhhhhcccccccccc-----------------------ccccccccccccchhhhhhhcccccccccccccchhh
Confidence 00 0001234444444443 3210 012334555555555554322211
Q ss_pred CCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCc----cccccCceeeccCCchh--------
Q 039689 488 SPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQ----DIRSLNRLQISRCPQLI-------- 555 (763)
Q Consensus 488 ~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~----~l~~L~~L~l~~~~~l~-------- 555 (763)
.+..+.. .....++|++|++++|.. . .+|. .+++|+.|+++++.-..
T Consensus 298 ~~~~l~~-------------~~~~~~~L~~L~l~~n~l-~-------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 298 LFYDLST-------------VYSLLEKVKRITVENSKV-F-------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp GSCCCCH-------------HHHHSTTCCEEEEESSCC-C-------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hcccchh-------------hhhhcccceEEEeccCcc-c-------cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 1111000 001233445555554432 1 2221 12233333322211000
Q ss_pred ----hhcceeeeccCCCcccccc-hhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCC
Q 039689 556 ----SLLRTVKIEDCNALESLPE-AWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNS 629 (763)
Q Consensus 556 ----~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 629 (763)
..|+.|++++ +.++.++. ......+++|++|++++|. ++.+|. +..+++|++|++++| .++.+|..+
T Consensus 357 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~---- 429 (549)
T 2z81_A 357 KGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI---- 429 (549)
T ss_dssp TTSSTTCCEEECTT-SCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTS-CCSCCCTTS----
T ss_pred hhccccCcEEEccC-CcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCC-Ccccccchh----
Confidence 0023333333 33444332 0011225555555555543 334443 344455555555555 234444321
Q ss_pred CCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC--CCCCcCeEeeccCCCCcc
Q 039689 630 STSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR--FPASLTELKISDMPSLER 707 (763)
Q Consensus 630 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ 707 (763)
.++|+.|++++| .++.++. .+++|+.|++++ +.+..+|. .+++|++|++++| .++.
T Consensus 430 ~~~L~~L~Ls~N-~l~~~~~------------------~l~~L~~L~Ls~--N~l~~ip~~~~l~~L~~L~Ls~N-~l~~ 487 (549)
T 2z81_A 430 PQTLEVLDVSNN-NLDSFSL------------------FLPRLQELYISR--NKLKTLPDASLFPVLLVMKISRN-QLKS 487 (549)
T ss_dssp CTTCSEEECCSS-CCSCCCC------------------CCTTCCEEECCS--SCCSSCCCGGGCTTCCEEECCSS-CCCC
T ss_pred cCCceEEECCCC-Chhhhcc------------------cCChhcEEECCC--CccCcCCCcccCccCCEEecCCC-ccCC
Confidence 245555555555 3333210 356777777776 46667776 5789999999995 6777
Q ss_pred ccCC-CCCCCCcCceecccCCCC
Q 039689 708 LSSI-GENLTSLKFLDLDNCPKL 729 (763)
Q Consensus 708 ip~~-~~~l~~L~~L~l~~c~~L 729 (763)
+|.. +..+++|++|++++|+-.
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCHHHHhcCcccCEEEecCCCcc
Confidence 6654 689999999999998743
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=286.68 Aligned_cols=172 Identities=17% Similarity=0.149 Sum_probs=120.2
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 273 (763)
+.+++|++++|.++.++ ..|.++++|++|+|++|.++.++ ..|+++++|++|++++| .+..+| ..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence 47999999999999884 68999999999999999999884 56899999999999995 566665 5699999999999
Q ss_pred cCCccccccccc--CCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
+++|. +..++. ++++++|+ .|.+.+.. +.. ..+..+.++++|+.|++++|
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~-~L~L~~n~----l~~~~lp~~~~~l~~L~~L~l~~n--------------------- 159 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLK-ELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSN--------------------- 159 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCC-EEECCSSC----CCCCCCCGGGGGCTTCCEEECTTS---------------------
T ss_pred ccccc-cccCCCcccccccccc-EEecCCCc----cceecChhhhcccCCCCEEeCcCC---------------------
Confidence 99997 776664 66666666 66665421 111 11334556666666666544
Q ss_pred CceEEEeeeCCCCC-CCccCCCCCCCc----eEEEEeccCCCCCCCCCCCCCCCCcceeccc
Q 039689 351 KLELTITGYGGTKF-PIWLGDSLFSKL----MLLKFDNCGTCTSLPSVGQLPFLKDPVISGM 407 (763)
Q Consensus 351 ~L~L~~~~~~~~~~-p~~~~~~~~~~L----~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 407 (763)
....+ |..+.. +++| +.|++++|......+......+|+.|+++++
T Consensus 160 ---------~l~~~~~~~~~~--l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 160 ---------KIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp ---------CCCEECGGGGHH--HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ---------ccceecHHHccc--hhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 22222 223332 4455 7788888865444443333347888888775
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.9e-31 Score=299.35 Aligned_cols=337 Identities=16% Similarity=0.227 Sum_probs=200.5
Q ss_pred CchhcchhhhhcccccEEeecccccccc------------------cccccc--CcccccccccCCccccccccc-CCCc
Q 039689 231 KIEILRESINTLYNLHTLLLEDCRRLKK------------------LCKDMG--NLTKLHHLNNSNVGSLEEMLM-LKSL 289 (763)
Q Consensus 231 ~i~~lp~~~~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~l~~-l~~L 289 (763)
.++.+|.+|+++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|. +.++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 344578888888888888888854 555 888888 888888888888875555664 6777
Q ss_pred cCCCceeeecCcccccCccc-chhhhhcC------cccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCC
Q 039689 290 VHLQGTLEISRLENVKGVGD-ASEVQLNS------KVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGT 362 (763)
Q Consensus 290 ~~L~~~L~~~~~~~~~~~~~-~~~~~l~~------l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~ 362 (763)
++|+ .|.+.+... +.. ..+..+.. +++|+.|++++| ...
T Consensus 273 ~~L~-~L~Ls~n~~---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n------------------------------~l~ 318 (636)
T 4eco_A 273 PEMQ-LINVACNRG---ISGEQLKDDWQALADAPVGEKIQIIYIGYN------------------------------NLK 318 (636)
T ss_dssp SSCC-EEECTTCTT---SCHHHHHHHHHHHHHSGGGGTCCEEECCSS------------------------------CCS
T ss_pred CCCC-EEECcCCCC---CccccchHHHHhhhccccCCCCCEEECCCC------------------------------cCC
Confidence 7777 676665321 111 22233333 367777777655 333
Q ss_pred CCCC--ccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCC-cceeeccccch
Q 039689 363 KFPI--WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS-LETLFFVDICS 439 (763)
Q Consensus 363 ~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~-L~~L~l~~~~~ 439 (763)
.+|. ++.. +++|+.|++++|...+.+|.++.+++|+.|++++|... .++..+ ..+++ |++|++.+ +
T Consensus 319 ~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l------~~l~~~L~~L~Ls~--N 387 (636)
T 4eco_A 319 TFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF------CGFTEQVENLSFAH--N 387 (636)
T ss_dssp SCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTS------EEECTTCCEEECCS--S
T ss_pred ccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhh------hhhcccCcEEEccC--C
Confidence 5666 5655 77888888888866556777777888888888876433 333332 23566 77777776 3
Q ss_pred hhhcCCCCc-----CCcccEEEEecCcch---hhcCC-------CCCcccEEEEecCCcccccCCCccccceeccccchh
Q 039689 440 KLQGTLPER-----LLLLEKLNIFRCEQL---LVTLQ-------CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMA 504 (763)
Q Consensus 440 ~l~~~~~~~-----~~~L~~L~l~~~~~l---~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~ 504 (763)
.+. .+|.. +++|+.|++++|... +..++ .+++|++|++++|....+
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l------------------ 448 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF------------------ 448 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC------------------
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC------------------
Confidence 333 44432 235677777766532 22344 456777777777754421
Q ss_pred hhhhcCCCCCCceEEEeccCCccccccccCcCCcc-ccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCC
Q 039689 505 KEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQD-IRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSS 583 (763)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~-l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 583 (763)
+...+..+++|++|++++|... .+|.. +..+. -.+.+++. |+.|++++ +.++.+|..+....+++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~--------~i~~~~~~~~~-~~~~~l~~----L~~L~Ls~-N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLT--------EIPKNSLKDEN-ENFKNTYL----LTSIDLRF-NKLTKLSDDFRATTLPY 514 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCS--------BCCSSSSEETT-EECTTGGG----CCEEECCS-SCCCBCCGGGSTTTCTT
T ss_pred CHHHHccCCCCCEEECCCCCCC--------CcCHHHhcccc-ccccccCC----ccEEECcC-CcCCccChhhhhccCCC
Confidence 1122245677777777777643 22211 11000 00000000 44444444 45556776643123677
Q ss_pred cceEEEecCccccccCC-CCCCCCccEEEEc------cCCCCCCCchhhhcCCCCCcceEeeccCCCccccccc
Q 039689 584 LESLKIRSCNSLVSFPD-FALPSQLRTVTIK------GCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARI 650 (763)
Q Consensus 584 L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~------~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 650 (763)
|++|++++|.. +.+|. +..+++|++|+++ +|...+.+|..+ ..+++|+.|++++| .++.+|..
T Consensus 515 L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~l~~ip~~ 584 (636)
T 4eco_A 515 LVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSN-DIRKVNEK 584 (636)
T ss_dssp CCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CCCBCCSC
T ss_pred cCEEECCCCCC-CCcChhhhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCC-cCCccCHh
Confidence 77777777553 34654 5566777777774 344455666666 56777777777777 44555543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=280.21 Aligned_cols=188 Identities=18% Similarity=0.153 Sum_probs=102.3
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 277 (763)
++|++++|.++.+|..+. ++|++|+|++|.++.+| ..|+++++|++|++++| .+..+ |..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 466777777766666554 67777777777766654 46677777777777764 34444 555677777777777776
Q ss_pred ccccccccCCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEE
Q 039689 278 GSLEEMLMLKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELT 355 (763)
Q Consensus 278 ~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~ 355 (763)
. +..+|.. .+++|+ .|++.+.. +.. ..+..+.++++|+.|++++|.... ..+..+..+ .| .|.
T Consensus 80 ~-l~~lp~~-~l~~L~-~L~L~~N~----l~~~~~p~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~L-~L~~L~ 144 (520)
T 2z7x_B 80 K-LVKISCH-PTVNLK-HLDLSFNA----FDALPICKEFGNMSQLKFLGLSTTHLEK-------SSVLPIAHL-NISKVL 144 (520)
T ss_dssp C-CCEEECC-CCCCCS-EEECCSSC----CSSCCCCGGGGGCTTCCEEEEEESSCCG-------GGGGGGTTS-CEEEEE
T ss_pred c-eeecCcc-ccCCcc-EEeccCCc----cccccchhhhccCCcceEEEecCcccch-------hhccccccc-eeeEEE
Confidence 5 6666655 566666 55554421 111 122456667777777777664322 122223333 22 444
Q ss_pred EeeeCC---CCCCCccCCCCCC-CceEEEEeccCCCCCCC--CCCCCCCCCcceeccc
Q 039689 356 ITGYGG---TKFPIWLGDSLFS-KLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGM 407 (763)
Q Consensus 356 ~~~~~~---~~~p~~~~~~~~~-~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~ 407 (763)
+.++.. ...|.++.. +. +...+++++|.....++ .+..+++|+.++++++
T Consensus 145 l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred eecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 444333 223443332 21 22234445554444443 3455666666666654
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.9e-29 Score=286.33 Aligned_cols=441 Identities=14% Similarity=0.166 Sum_probs=260.2
Q ss_pred CcccEEEecCCCCC-ccCcccCCCCcccEEecCCCCch-------------hcchhh---------------------h-
Q 039689 197 PRLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIE-------------ILRESI---------------------N- 240 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-------------~lp~~~---------------------~- 240 (763)
.+++.|+|+++.+. .+|.+|+.|++|++|+|++|.+. .+|... +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57899999999987 57999999999999999999662 222211 1
Q ss_pred hcc------------------cccEEeecc-ccccccccccccCcccccccccCCcccccc------------------c
Q 039689 241 TLY------------------NLHTLLLED-CRRLKKLCKDMGNLTKLHHLNNSNVGSLEE------------------M 283 (763)
Q Consensus 241 ~L~------------------~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------l 283 (763)
.+. .++.+.+.. ++.+..+|..++++++|++|++++|. +.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 011 112222221 34666799999999999999999998 766 6
Q ss_pred cc-CC--CccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc-CCCCCCccHHHHhhcCCCCCCceEEEeee
Q 039689 284 LM-LK--SLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV-RDAVEPKTETQVIDMLKPHQKLELTITGY 359 (763)
Q Consensus 284 ~~-l~--~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~l~~L~L~~~~~ 359 (763)
|. +. ++++|+ .|.+.+.... ...+..+.++++|+.|++++|. ...
T Consensus 240 p~~l~~~~l~~L~-~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~~l~~-------------------------- 288 (636)
T 4eco_A 240 TEDLKWDNLKDLT-DVEVYNCPNL----TKLPTFLKALPEMQLINVACNRGISG-------------------------- 288 (636)
T ss_dssp TSCCCGGGCTTCC-EEEEECCTTC----SSCCTTTTTCSSCCEEECTTCTTSCH--------------------------
T ss_pred chhhhhcccCCCC-EEEecCCcCC----ccChHHHhcCCCCCEEECcCCCCCcc--------------------------
Confidence 64 44 566666 5555443211 1222344555555555554442 110
Q ss_pred CCCCCCCccCC----CCCCCceEEEEeccCCCCCCCC---CCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689 360 GGTKFPIWLGD----SLFSKLMLLKFDNCGTCTSLPS---VGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL 432 (763)
Q Consensus 360 ~~~~~p~~~~~----~~~~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L 432 (763)
..+|..++. ..+++|+.|++++|... .+|. ++.+++|+.|++++|.....++ .+
T Consensus 289 --~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~--------------- 349 (636)
T 4eco_A 289 --EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF--------------- 349 (636)
T ss_dssp --HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC---------------
T ss_pred --ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh---------------
Confidence 012222211 01356667777666544 5554 6666666666666654332332 21
Q ss_pred eccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCc-ccEEEEecCCcccccCCCccccceeccccchhhhhhc
Q 039689 433 FFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPA-LRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFE 509 (763)
Q Consensus 433 ~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~-L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 509 (763)
..+++|++|++++|. .++..+..+++ |++|++++|....++. .+. .
T Consensus 350 --------------~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~--~~~---------------~ 398 (636)
T 4eco_A 350 --------------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN--IFD---------------A 398 (636)
T ss_dssp --------------EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS--CCC---------------T
T ss_pred --------------CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch--hhh---------------h
Confidence 123445555555543 22334556777 8888888886543221 110 0
Q ss_pred CCCCCCceEEEeccCCccccccccCcCCcccc--ccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689 510 QGLPKLERLEIQHVREQTYLWRSETRLPQDIR--SLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL 587 (763)
Q Consensus 510 ~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~--~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 587 (763)
..+++|++|++++|.... ..|..++ ....+.... |+.|++++ +.++.+|..++. .+++|++|
T Consensus 399 ~~l~~L~~L~Ls~N~l~~-------~~p~~l~~~~~~~~~~~~-------L~~L~Ls~-N~l~~lp~~~~~-~l~~L~~L 462 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGS-------VDGKNFDPLDPTPFKGIN-------VSSINLSN-NQISKFPKELFS-TGSPLSSI 462 (636)
T ss_dssp TCSSCEEEEECCSSCTTT-------TTTCSSCTTCSSCCCCCC-------EEEEECCS-SCCCSCCTHHHH-TTCCCSEE
T ss_pred cccCccCEEECcCCcCCC-------cchhhhcccccccccCCC-------CCEEECcC-CccCcCCHHHHc-cCCCCCEE
Confidence 224578888888887654 3343333 000011111 55555655 566788877443 47899999
Q ss_pred EEecCccccccCCC--CCC-------CCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC-CCCCc
Q 039689 588 KIRSCNSLVSFPDF--ALP-------SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL-PPSLK 657 (763)
Q Consensus 588 ~l~~c~~l~~~~~~--~~~-------~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~ 657 (763)
++++|. ++.+|.. ... ++|++|++++| .++.+|..+....+++|+.|++++| .++.+|.... .++|+
T Consensus 463 ~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~ 539 (636)
T 4eco_A 463 NLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLK 539 (636)
T ss_dssp ECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCC
T ss_pred ECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCC
Confidence 998866 4577752 222 28999999998 4558887762228899999999988 5655654321 33444
Q ss_pred EEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccC
Q 039689 658 RLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSK 734 (763)
Q Consensus 658 ~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~ 734 (763)
.|+++++..+ ++ +.-...+|. .+++|++|++++| .++.+|..+. ++|++|++++|+ +..++.
T Consensus 540 ~L~Ls~N~~l----------s~-N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~ 604 (636)
T 4eco_A 540 GFGIRNQRDA----------QG-NRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP-NISIDL 604 (636)
T ss_dssp EEECCSCBCT----------TC-CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT-TCEEEC
T ss_pred EEECCCCccc----------cc-CcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC-CccccH
Confidence 4444333211 11 111223443 4678999999995 5699997655 899999999985 555553
Q ss_pred CCcc----------cccceeeeccChhHH
Q 039689 735 QGLP----------KSLLRLIIDECPLIE 753 (763)
Q Consensus 735 ~~~~----------~~L~~L~i~~C~~l~ 753 (763)
.+.. ...+..+|.+||.|+
T Consensus 605 ~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 605 SYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred HhcchhhhcccceeecCCccccCCCcccc
Confidence 2221 233556789999874
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.8e-28 Score=279.32 Aligned_cols=497 Identities=17% Similarity=0.112 Sum_probs=280.3
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
+.+++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ +|++|++|++|+|++ +.+..+|.. |+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEEE
Confidence 47899999999999996 689999999999999999999864 689999999999999 478888765 89999999999
Q ss_pred cCCccccccccc--CCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
+++|. +..++. ++++++|+ .|.+.+.. +.. ..+..+..+++|+.|++++|....... ..+..+....
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~-~L~Ls~N~----l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~l~~L~~l~ 200 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLK-ELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMP 200 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCC-EEECCSSC----CCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCT
T ss_pred CCCCc-CCCCChhhhhcCcccC-eeccccCc----cccCCCchhhccchhhhhhcccCcccccccc----ccccchhhhh
Confidence 99998 888875 78888998 88876532 111 223467788999999998886543322 2233333333
Q ss_pred Cc--eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCC
Q 039689 351 KL--ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSF 426 (763)
Q Consensus 351 ~L--~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f 426 (763)
.. .+.+..+....++..... ...+..+++.++.....+. .+..++.++...+......................
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 33 455555555555443322 3456667776653221111 23334444433332111100000000000000112
Q ss_pred CCcceeeccccc-h-hhh--cCCCCcCCcccEEEEecCcchh-hcCCCCCcccEEEEecCCccccc--CCCccccceecc
Q 039689 427 PSLETLFFVDIC-S-KLQ--GTLPERLLLLEKLNIFRCEQLL-VTLQCLPALRELEIDGCKGVVLS--SPTDLSSLKLVH 499 (763)
Q Consensus 427 ~~L~~L~l~~~~-~-~l~--~~~~~~~~~L~~L~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~--~~~~L~~L~~~~ 499 (763)
..+....+.... . ... ......+.+++.+.+.++.... ..+....+|+.|++.+|...... .+..++.+.+..
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence 222222222110 0 000 0112344566666666654221 12344556777777766433221 122222222222
Q ss_pred ccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC---ccccccCceeeccCCchhhhcceeeeccCCCcccccchh
Q 039689 500 SRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP---QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAW 576 (763)
Q Consensus 500 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p---~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~ 576 (763)
...... .....+++|+.+++++|...... ..+ ....+ |+.+++..+ ....++..+
T Consensus 359 n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~-----~~~~~~~~~~~---------------L~~L~~~~~-~~~~~~~~~ 416 (635)
T 4g8a_A 359 NKGGNA-FSEVDLPSLEFLDLSRNGLSFKG-----CCSQSDFGTIS---------------LKYLDLSFN-GVITMSSNF 416 (635)
T ss_dssp CCSCCB-CCCCBCTTCCEEECCSSCCBEEE-----ECCHHHHSCSC---------------CCEEECCSC-SEEEECSCC
T ss_pred ccCCCC-cccccccccccchhhcccccccc-----ccccchhhhhh---------------hhhhhcccc-ccccccccc
Confidence 211100 01123455555555555432110 111 11222 444444442 223333332
Q ss_pred hhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCC
Q 039689 577 MHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPP 654 (763)
Q Consensus 577 ~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 654 (763)
. .+++|+.+++.+++.....+. +..+++++.+++++|......+..+ ..+++|+.|++++|.....+....+.
T Consensus 417 ~--~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~- 491 (635)
T 4g8a_A 417 L--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFT- 491 (635)
T ss_dssp T--TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCT-
T ss_pred c--ccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhh-
Confidence 2 267777777766655444332 4556777777777774444444444 66777777777777544444333221
Q ss_pred CCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCC
Q 039689 655 SLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKL 729 (763)
Q Consensus 655 ~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L 729 (763)
.+++|+.|++++ +.+..++. .+++|++|+|++ ++++.++.. +..+++|++|++++| ++
T Consensus 492 -------------~l~~L~~L~Ls~--N~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l 554 (635)
T 4g8a_A 492 -------------ELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HI 554 (635)
T ss_dssp -------------TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CC
T ss_pred -------------hccccCEEECCC--CccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cC
Confidence 345666666665 34555543 467888999988 577777654 478889999999885 67
Q ss_pred ccccCC---CcccccceeeeccCh
Q 039689 730 KYFSKQ---GLPKSLLRLIIDECP 750 (763)
Q Consensus 730 ~~l~~~---~~~~~L~~L~i~~C~ 750 (763)
+.++.. .++++|+.|+++++|
T Consensus 555 ~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 555 MTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCHHHHHhhhCcCCEEEeeCCC
Confidence 777653 345789999987643
No 18
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.1e-28 Score=267.48 Aligned_cols=388 Identities=23% Similarity=0.225 Sum_probs=167.6
Q ss_pred CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCch-hcchhhhhcccc-------------cEEeecccccccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNL-------------HTLLLEDCRRLKKLC 260 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L-------------~~L~L~~~~~l~~lp 260 (763)
..++|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++++.+| ++|++++| .+..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence 357888888888888888888888888888888888877 678888888776 44444442 344443
Q ss_pred ccccCcccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHH
Q 039689 261 KDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTET 340 (763)
Q Consensus 261 ~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 340 (763)
.. .++|++|++++|. ++.+|. ..++|+.|++++|
T Consensus 88 ~~---~~~L~~L~l~~n~-l~~lp~-------------------------------~~~~L~~L~l~~n----------- 121 (454)
T 1jl5_A 88 EL---PPHLESLVASCNS-LTELPE-------------------------------LPQSLKSLLVDNN----------- 121 (454)
T ss_dssp SC---CTTCSEEECCSSC-CSSCCC-------------------------------CCTTCCEEECCSS-----------
T ss_pred CC---cCCCCEEEccCCc-CCcccc-------------------------------ccCCCcEEECCCC-----------
Confidence 31 2344444444443 222221 0124444444333
Q ss_pred HHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCC
Q 039689 341 QVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGS 420 (763)
Q Consensus 341 ~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 420 (763)
....+|.. .++|++|++++|... .+|.++.+++|++|+++++.... ++
T Consensus 122 -------------------~l~~l~~~-----~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-lp------ 169 (454)
T 1jl5_A 122 -------------------NLKALSDL-----PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKK-LP------ 169 (454)
T ss_dssp -------------------CCSCCCSC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSC-CC------
T ss_pred -------------------ccCcccCC-----CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcCcc-cC------
Confidence 23333321 257788888877543 46677777788888887754321 11
Q ss_pred CcCCCCCCcceeeccccchhhhcCCC--CcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceec
Q 039689 421 SCSVSFPSLETLFFVDICSKLQGTLP--ERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLV 498 (763)
Q Consensus 421 ~~~~~f~~L~~L~l~~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~ 498 (763)
..+++|++|++.+ +.+.+ +| ..+++|+.|++.+|.... .....++|++|++++|....++.
T Consensus 170 ---~~~~~L~~L~L~~--n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~---------- 232 (454)
T 1jl5_A 170 ---DLPPSLEFIAAGN--NQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPE---------- 232 (454)
T ss_dssp ---CCCTTCCEEECCS--SCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCC----------
T ss_pred ---CCcccccEEECcC--CcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccc----------
Confidence 1134677777665 23322 22 245566666666654211 11123456666666664332221
Q ss_pred cccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhh
Q 039689 499 HSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMH 578 (763)
Q Consensus 499 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~ 578 (763)
+..+++|++|++++|... .+|..+++|+.|++++ +.++.+|..
T Consensus 233 ----------~~~l~~L~~L~l~~N~l~--------~l~~~~~~L~~L~l~~----------------N~l~~l~~~--- 275 (454)
T 1jl5_A 233 ----------LQNLPFLTTIYADNNLLK--------TLPDLPPSLEALNVRD----------------NYLTDLPEL--- 275 (454)
T ss_dssp ----------CTTCTTCCEEECCSSCCS--------SCCSCCTTCCEEECCS----------------SCCSCCCCC---
T ss_pred ----------cCCCCCCCEEECCCCcCC--------cccccccccCEEECCC----------------CcccccCcc---
Confidence 245677777777776532 3444444555544444 345555543
Q ss_pred cCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcE
Q 039689 579 NSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKR 658 (763)
Q Consensus 579 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 658 (763)
+++|++|++++|. ++.+|. .+++|++|++++|. +..++. ..++|+.|++++| .++.+|.. ++
T Consensus 276 --~~~L~~L~ls~N~-l~~l~~--~~~~L~~L~l~~N~-l~~i~~-----~~~~L~~L~Ls~N-~l~~lp~~--~~---- 337 (454)
T 1jl5_A 276 --PQSLTFLDVSENI-FSGLSE--LPPNLYYLNASSNE-IRSLCD-----LPPSLEELNVSNN-KLIELPAL--PP---- 337 (454)
T ss_dssp --CTTCCEEECCSSC-CSEESC--CCTTCCEEECCSSC-CSEECC-----CCTTCCEEECCSS-CCSCCCCC--CT----
T ss_pred --cCcCCEEECcCCc-cCcccC--cCCcCCEEECcCCc-CCcccC-----CcCcCCEEECCCC-cccccccc--CC----
Confidence 3566666666544 344442 23566666666663 333221 1246666666665 44444321 23
Q ss_pred EEEecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCc--cccCCCCCC-------------CCcCceec
Q 039689 659 LIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLE--RLSSIGENL-------------TSLKFLDL 723 (763)
Q Consensus 659 L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~ip~~~~~l-------------~~L~~L~l 723 (763)
+|+.|++++ +.+..+|..+++|++|++++|.... .+|..+..+ ++|++|++
T Consensus 338 ------------~L~~L~L~~--N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 338 ------------RLERLIASF--NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp ------------TCCEEECCS--SCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred ------------cCCEEECCC--CccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 333444433 2333444444556666666533222 344444443 88999999
Q ss_pred ccCCCCccccCCCcccccceeeeccCh
Q 039689 724 DNCPKLKYFSKQGLPKSLLRLIIDECP 750 (763)
Q Consensus 724 ~~c~~L~~l~~~~~~~~L~~L~i~~C~ 750 (763)
+++ .++.++. +|++++.|++.+|.
T Consensus 404 s~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 404 ETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp ---------------------------
T ss_pred CCC-cCCcccc--chhhHhheeCcCcc
Confidence 996 5666544 77889999988764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.8e-28 Score=282.31 Aligned_cols=375 Identities=17% Similarity=0.180 Sum_probs=194.1
Q ss_pred CcccEEEecCCCCC-ccCcccCCCCcccEEec-CCCCch-----------------------------------------
Q 039689 197 PRLRVFSLRGYNIF-ELPKAIENLKHLRFLDL-STTKIE----------------------------------------- 233 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L-~~~~i~----------------------------------------- 233 (763)
.++..|+|+++.+. .+|++|+.|++|++|+| ++|.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56788888888876 46888888888888888 655432
Q ss_pred ------------------------------------hcchhhhhcccccEEeecccccccc------------------c
Q 039689 234 ------------------------------------ILRESINTLYNLHTLLLEDCRRLKK------------------L 259 (763)
Q Consensus 234 ------------------------------------~lp~~~~~L~~L~~L~L~~~~~l~~------------------l 259 (763)
.+|.+|++|++|++|+|++| .+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccC
Confidence 25555566666666666653 3333 5
Q ss_pred ccccc--CcccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc-CCC-CC
Q 039689 260 CKDMG--NLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV-RDA-VE 335 (763)
Q Consensus 260 p~~i~--~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~ 335 (763)
|+.++ ++++|++|++++|.....+| ..+.++++|+.|++++|. ... ..
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP----------------------------~~l~~L~~L~~L~Ls~N~~lsg~~i 533 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP----------------------------DFLYDLPELQSLNIACNRGISAAQL 533 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC----------------------------GGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh----------------------------HHHhCCCCCCEEECcCCCCcccccc
Confidence 55555 56666666665554233333 344555556666665542 211 00
Q ss_pred CccHHHHhh-cCCCCCCc-eEEEeeeCCCCCCC--ccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCce
Q 039689 336 PKTETQVID-MLKPHQKL-ELTITGYGGTKFPI--WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVK 411 (763)
Q Consensus 336 ~~~~~~~l~-~l~~l~~L-~L~~~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~ 411 (763)
+. ....+. .+..++.| .|.+.++....+|. ++.. +++|+.|++++|... .+|.++.+++|+.|++++|...
T Consensus 534 P~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~- 608 (876)
T 4ecn_A 534 KA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE- 608 (876)
T ss_dssp HH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-
T ss_pred hH-HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-
Confidence 00 001111 33444455 66666666667777 6665 788888888888654 7777888888888888876543
Q ss_pred EeCccccCCCcCCCCCC-cceeeccccchhhhcCCCCcC-----CcccEEEEecCcchh------hcCC--CCCcccEEE
Q 039689 412 IVGSEFYGSSCSVSFPS-LETLFFVDICSKLQGTLPERL-----LLLEKLNIFRCEQLL------VTLQ--CLPALRELE 477 (763)
Q Consensus 412 ~~~~~~~~~~~~~~f~~-L~~L~l~~~~~~l~~~~~~~~-----~~L~~L~l~~~~~l~------~~l~--~l~~L~~L~ 477 (763)
.++..+ ..+++ |+.|++.+ +.+. .+|..+ ++|+.|++++|.... ..+. .+++|++|+
T Consensus 609 ~lp~~l------~~l~~~L~~L~Ls~--N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 609 EIPEDF------CAFTDQVEGLGFSH--NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCCTTS------CEECTTCCEEECCS--SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred cchHHH------hhccccCCEEECcC--CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 333222 22556 77777776 2333 344322 225556665553211 0011 223566666
Q ss_pred EecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhh
Q 039689 478 IDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISL 557 (763)
Q Consensus 478 l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~ 557 (763)
+++|.... .+...+..+++|+.|++++|... .+|........-.+.+|+.
T Consensus 680 Ls~N~L~~------------------lp~~~~~~l~~L~~L~Ls~N~L~--------~ip~~~~~~~~~~l~nl~~---- 729 (876)
T 4ecn_A 680 LSYNEIQK------------------FPTELFATGSPISTIILSNNLMT--------SIPENSLKPKDGNYKNTYL---- 729 (876)
T ss_dssp CCSSCCCS------------------CCHHHHHTTCCCSEEECCSCCCS--------CCCTTSSSCTTSCCTTGGG----
T ss_pred ccCCcCCc------------------cCHHHHccCCCCCEEECCCCcCC--------ccChHHhccccccccccCC----
Confidence 66554331 11122234566666666666432 2221111000000000001
Q ss_pred cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEcc------CCCCCCCchhhhcCCC
Q 039689 558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKG------CDALESLPEAWMQNSS 630 (763)
Q Consensus 558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~l 630 (763)
|+.|++++ +.++.+|..+....+++|+.|++++|. +..+|. +..+++|+.|++++ |...+.+|..+ ..+
T Consensus 730 L~~L~Ls~-N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L 805 (876)
T 4ecn_A 730 LTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTC 805 (876)
T ss_dssp CCEEECCS-SCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGC
T ss_pred ccEEECCC-CCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHH--hcC
Confidence 33444444 344455555331235666666665544 333443 44556666666654 33344555554 456
Q ss_pred CCcceEeeccCCCcccccc
Q 039689 631 TSLESLAIDSCDSLTYIAR 649 (763)
Q Consensus 631 ~~L~~L~l~~c~~l~~l~~ 649 (763)
++|+.|++++| .++.+|.
T Consensus 806 ~~L~~L~Ls~N-~L~~Ip~ 823 (876)
T 4ecn_A 806 PSLIQLQIGSN-DIRKVDE 823 (876)
T ss_dssp SSCCEEECCSS-CCCBCCS
T ss_pred CCCCEEECCCC-CCCccCH
Confidence 66666666665 3344443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.5e-27 Score=266.22 Aligned_cols=430 Identities=19% Similarity=0.143 Sum_probs=239.2
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 274 (763)
...++++++++.++.+|..+. ++|++|+|++|.++.+| .+|+++++|++|++++| .+..+ |..|+++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 344788888888888887664 78888888888888775 57888888888888884 55555 556888888888888
Q ss_pred CCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceE
Q 039689 275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLEL 354 (763)
Q Consensus 275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L 354 (763)
++|. +..+|.. .+++|+ .|++++|.....
T Consensus 108 s~N~-l~~lp~~-~l~~L~-----------------------------~L~Ls~N~l~~l-------------------- 136 (562)
T 3a79_B 108 SHNR-LQNISCC-PMASLR-----------------------------HLDLSFNDFDVL-------------------- 136 (562)
T ss_dssp TTSC-CCEECSC-CCTTCS-----------------------------EEECCSSCCSBC--------------------
T ss_pred CCCc-CCccCcc-ccccCC-----------------------------EEECCCCCcccc--------------------
Confidence 8887 6666543 344444 333333211100
Q ss_pred EEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCC--CcceecccCC--ceEeCccccCCCcCCCCCCcc
Q 039689 355 TITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFL--KDPVISGMGR--VKIVGSEFYGSSCSVSFPSLE 430 (763)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~f~~L~ 430 (763)
..|..+.. +++|+.|++++|.... ..+..+++| +.|+++++.. ...... .|+.+.
T Consensus 137 --------~~p~~~~~--l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~---------~l~~l~ 195 (562)
T 3a79_B 137 --------PVCKEFGN--LTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETE---------SLQIPN 195 (562)
T ss_dssp --------CCCGGGGG--CTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCC---------EEEECC
T ss_pred --------CchHhhcc--cCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcc---------cccccC
Confidence 01122222 3444444444443211 122222222 4444444322 111110 111111
Q ss_pred --ee--eccccchhhhcCCC----CcCCcccEEEEecCc----ch---hhcCCCCCcccEEEEecCCcccccCCCccccc
Q 039689 431 --TL--FFVDICSKLQGTLP----ERLLLLEKLNIFRCE----QL---LVTLQCLPALRELEIDGCKGVVLSSPTDLSSL 495 (763)
Q Consensus 431 --~L--~l~~~~~~l~~~~~----~~~~~L~~L~l~~~~----~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L 495 (763)
.+ ++.+ +.+.+.++ ..+++|+.+++.++. .+ ...+..+++|+.+++.++.....
T Consensus 196 ~~~l~l~l~~--n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~--------- 264 (562)
T 3a79_B 196 TTVLHLVFHP--NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK--------- 264 (562)
T ss_dssp EEEEEEEECS--SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH---------
T ss_pred cceEEEEecC--ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH---------
Confidence 11 2221 12222222 245677777777653 11 12345677777777776532210
Q ss_pred eeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccc-----cccCceeeccCCc---------hhh-----
Q 039689 496 KLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDI-----RSLNRLQISRCPQ---------LIS----- 556 (763)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l-----~~L~~L~l~~~~~---------l~~----- 556 (763)
....... ....++|++|++++|.... .+|..+ ++|+.|.+.++.. +..
T Consensus 265 -----~~~~~~~-~~~~~~L~~L~l~~n~l~~-------~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 265 -----CSVKLFQ-FFWPRPVEYLNIYNLTITE-------RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp -----HHHHHHH-HHTTSSEEEEEEEEEEECS-------CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred -----HHHHHHH-hhhcccccEEEEeccEeec-------cccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 0000000 1223588888888886543 344333 5555554433211 001
Q ss_pred hcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCc---hhhhcCCCCC
Q 039689 557 LLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLP---EAWMQNSSTS 632 (763)
Q Consensus 557 ~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~ 632 (763)
.|++|++++|. +..++. ...+++|++|++++|.....+|. +..+++|++|++++| .++.++ ..+ ..+++
T Consensus 332 ~L~~L~l~~n~-~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~--~~l~~ 404 (562)
T 3a79_B 332 NIKMLSISDTP-FIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMT--KNMSS 404 (562)
T ss_dssp CCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTT--TTCTT
T ss_pred cceEEEccCCC-cccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhh--cCCCC
Confidence 16667777654 222221 02367777888777654443443 566677788888777 444433 333 66777
Q ss_pred cceEeeccCCCccc-cccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCC-CCcCeEeeccCCCCccccC
Q 039689 633 LESLAIDSCDSLTY-IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFP-ASLTELKISDMPSLERLSS 710 (763)
Q Consensus 633 L~~L~l~~c~~l~~-l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~ip~ 710 (763)
|+.|++++| .++. +|...+. .+++|+.|++++ +.-...+|..+ ++|++|++++ +.++.+|.
T Consensus 405 L~~L~l~~N-~l~~~~~~~~~~--------------~l~~L~~L~l~~-n~l~~~~~~~l~~~L~~L~L~~-N~l~~ip~ 467 (562)
T 3a79_B 405 LETLDVSLN-SLNSHAYDRTCA--------------WAESILVLNLSS-NMLTGSVFRCLPPKVKVLDLHN-NRIMSIPK 467 (562)
T ss_dssp CCEEECTTS-CCBSCCSSCCCC--------------CCTTCCEEECCS-SCCCGGGGSSCCTTCSEEECCS-SCCCCCCT
T ss_pred CCEEECCCC-cCCCccChhhhc--------------CcccCCEEECCC-CCCCcchhhhhcCcCCEEECCC-CcCcccCh
Confidence 788888777 4443 5543221 235566666665 22112333333 6899999998 48889998
Q ss_pred CCCCCCCcCceecccCCCCccccCC--CcccccceeeeccCh
Q 039689 711 IGENLTSLKFLDLDNCPKLKYFSKQ--GLPKSLLRLIIDECP 750 (763)
Q Consensus 711 ~~~~l~~L~~L~l~~c~~L~~l~~~--~~~~~L~~L~i~~C~ 750 (763)
.+..+++|++|++++| +++.+|.. ...++|+.|+++++|
T Consensus 468 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 468 DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 8888999999999986 68888874 334789999988764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=265.61 Aligned_cols=426 Identities=16% Similarity=0.124 Sum_probs=232.0
Q ss_pred cEEecCCCCchhcchhhhhcccccEEeecccccccccc-ccccCcccccccccCCcccccccccCCCccCCCceeeecCc
Q 039689 223 RFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRL 301 (763)
Q Consensus 223 ~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~ 301 (763)
++||+++|.++.+|..+. ++|++|++++| .+..+| ..|+++++|++|++++|. +..++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~----------------- 61 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLD----------------- 61 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEE-----------------
T ss_pred ceEecCCCCccccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcC-----------------
Confidence 689999999999998777 89999999995 566665 579999999999999997 55442
Q ss_pred ccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCCC--CCCccCCCCCCCceE
Q 039689 302 ENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTK--FPIWLGDSLFSKLML 378 (763)
Q Consensus 302 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~~--~p~~~~~~~~~~L~~ 378 (763)
+..+.++++|+.|++++|..... ... .++.| .|++.++.... +|..++. +++|++
T Consensus 62 ----------~~~~~~l~~L~~L~Ls~N~l~~l---------p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~--l~~L~~ 119 (520)
T 2z7x_B 62 ----------ISVFKFNQELEYLDLSHNKLVKI---------SCH-PTVNLKHLDLSFNAFDALPICKEFGN--MSQLKF 119 (520)
T ss_dssp ----------GGGGTTCTTCCEEECCSSCCCEE---------ECC-CCCCCSEEECCSSCCSSCCCCGGGGG--CTTCCE
T ss_pred ----------hHHhhcccCCCEEecCCCceeec---------Ccc-ccCCccEEeccCCccccccchhhhcc--CCcceE
Confidence 12333444555555544422110 000 12222 22222222222 3344444 566666
Q ss_pred EEEeccCCCCCCCCCCCCCCC--CcceecccCC--ceEeCccccCCCcCCCCCCcc----eeeccccchhhhcCCC----
Q 039689 379 LKFDNCGTCTSLPSVGQLPFL--KDPVISGMGR--VKIVGSEFYGSSCSVSFPSLE----TLFFVDICSKLQGTLP---- 446 (763)
Q Consensus 379 L~l~~~~~~~~l~~l~~l~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~f~~L~----~L~l~~~~~~l~~~~~---- 446 (763)
|++++|.... ..++.+++| +.|+++++.. ..... ..|..++ .+++.+ +...+.++
T Consensus 120 L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~---------~~l~~l~~~~l~l~l~~--n~~~~~~~~~~~ 186 (520)
T 2z7x_B 120 LGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDP---------EGLQDFNTESLHIVFPT--NKEFHFILDVSV 186 (520)
T ss_dssp EEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCT---------TTTTTCCEEEEEEECCS--SSCCCCCCCCCC
T ss_pred EEecCcccch--hhccccccceeeEEEeeccccccccccc---------ccccccccceEEEEecc--Ccchhhhhhhhh
Confidence 6666654322 234444455 6666655433 11111 1122222 222222 11222222
Q ss_pred CcCCcccEEEEecCc------chh---hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCce
Q 039689 447 ERLLLLEKLNIFRCE------QLL---VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLER 517 (763)
Q Consensus 447 ~~~~~L~~L~l~~~~------~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ 517 (763)
..+++|+.|++.+|. .+. ..+..+++|++|++++|....... .. .... ...++|++
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~------------~~-~~~~--~~~~~L~~ 251 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF------------IR-ILQL--VWHTTVWY 251 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH------------HH-HHHH--HHTSSCSE
T ss_pred hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH------------HH-HHHH--hhhCcccE
Confidence 134455555555442 000 134445555555555543221000 00 0000 12457888
Q ss_pred EEEeccCCccccccccCcCCc--------cccccCceeeccCCc------hhh-----hcceeeeccCCCcccccchhhh
Q 039689 518 LEIQHVREQTYLWRSETRLPQ--------DIRSLNRLQISRCPQ------LIS-----LLRTVKIEDCNALESLPEAWMH 578 (763)
Q Consensus 518 L~l~~~~~l~~l~~~~~~~p~--------~l~~L~~L~l~~~~~------l~~-----~L~~L~l~~~~~l~~l~~~~~~ 578 (763)
|++++|.... .+|. .+++|+.++++++.- +.. .|+.|++++|. +..++. .
T Consensus 252 L~l~~n~l~~-------~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~ 320 (520)
T 2z7x_B 252 FSISNVKLQG-------QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---P 320 (520)
T ss_dssp EEEEEEEEES-------CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---C
T ss_pred EEeecccccC-------ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-cccccc---h
Confidence 8888886443 3332 334445555544321 111 16666666643 332221 0
Q ss_pred cCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCC--CCchhhhcCCCCCcceEeeccCCCccc-cccccCCC
Q 039689 579 NSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALE--SLPEAWMQNSSTSLESLAIDSCDSLTY-IARIQLPP 654 (763)
Q Consensus 579 ~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~ 654 (763)
..+++|++|++++|.....+|. +..+++|++|++++|...+ .+|..+ ..+++|+.|++++| .++. +|...+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N-~l~~~l~~~~~~- 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQN-SVSYDEKKGDCS- 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSS-CCBCCGGGCSCC-
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCC-cCCcccccchhc-
Confidence 1367777777776654443443 5666777777777774332 233444 66777777777776 4443 5543221
Q ss_pred CCcEEEEecCCCCCCCccceEEecCCCCCccccCC-CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCcccc
Q 039689 655 SLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR-FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS 733 (763)
Q Consensus 655 ~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~ 733 (763)
.+++|+.|++++ +.-...+|. .+++|++|++++ +.++.+|..+..+++|++|++++| +++.+|
T Consensus 397 -------------~l~~L~~L~Ls~-N~l~~~~~~~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 397 -------------WTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp -------------CCTTCCEEECCS-SCCCGGGGGSCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred -------------cCccCCEEECcC-CCCCcchhhhhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 234566666665 221123333 336899999999 478899987889999999999997 688888
Q ss_pred CCC--cccccceeeeccCh
Q 039689 734 KQG--LPKSLLRLIIDECP 750 (763)
Q Consensus 734 ~~~--~~~~L~~L~i~~C~ 750 (763)
... ..++|++|++++||
T Consensus 461 ~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhccCCcccEEECcCCC
Confidence 742 34789999998865
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=267.54 Aligned_cols=134 Identities=22% Similarity=0.304 Sum_probs=104.2
Q ss_pred hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccC
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~ 265 (763)
.+..|.++++|++|++++|.++.++ ..|+++++|++|+|++|.++.+| ..|+++++|++|++++ +.+..+|. .+++
T Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~ 122 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGH 122 (570)
T ss_dssp CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCSCTT
T ss_pred ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc-cccccCCCccccc
Confidence 4557789999999999999999884 67999999999999999999885 6899999999999999 47777776 5999
Q ss_pred cccccccccCCcccccc--ccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccc----cceEEeec
Q 039689 266 LTKLHHLNNSNVGSLEE--MLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNL----KALYLQWG 329 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~--l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~ 329 (763)
+++|++|++++|. +.. +|. ++++++|+ .+++.+. .+.......+..+++| +.|+++.|
T Consensus 123 l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 123 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLE-HLDLSSN----KIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp CTTCCEEECCSSC-CCCCCCCGGGGGCTTCC-EEECTTS----CCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccEEecCCCc-cceecChhhhcccCCCC-EEeCcCC----ccceecHHHccchhccchhhhhcccCCC
Confidence 9999999999997 654 343 77788888 7877653 2223333445555555 55555544
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.1e-27 Score=273.49 Aligned_cols=443 Identities=14% Similarity=0.141 Sum_probs=236.1
Q ss_pred CcccEEecCCCCch-hcchhhhhcccccEEee-ccccccc-cccccccC----c-----ccccccccC----Cc--cc--
Q 039689 220 KHLRFLDLSTTKIE-ILRESINTLYNLHTLLL-EDCRRLK-KLCKDMGN----L-----TKLHHLNNS----NV--GS-- 279 (763)
Q Consensus 220 ~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L-~~~~~l~-~lp~~i~~----L-----~~L~~L~l~----~~--~~-- 279 (763)
.+++.|+|+++.+. .+|++|++|++|++|+| ++ +.+. ..|..... + ..++..+.. .. ..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~-N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCT-THHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeeccc-ccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999998 78999999999999999 55 4432 22211100 0 111110000 00 00
Q ss_pred ------ccccccCCCccCCCceeeecCcc--c-ccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 280 ------LEEMLMLKSLVHLQGTLEISRLE--N-VKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 280 ------l~~l~~l~~L~~L~~~L~~~~~~--~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
+...+......... .+.+..+. . .+.+.. .+..+.++++|+.|++++|......... ...+..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~-~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~------~~~~~s 473 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDS-RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV------DWEDAN 473 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCC-CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS------SCSCTT
T ss_pred HHHHHHhhhCcccccccccc-ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc------cccccc
Confidence 00001110000000 11111110 0 112223 3456888899999999877543310000 000000
Q ss_pred CceEEEeeeCCCCCCCccC--CCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCce--EeCccccCCC-cCC
Q 039689 351 KLELTITGYGGTKFPIWLG--DSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVK--IVGSEFYGSS-CSV 424 (763)
Q Consensus 351 ~L~L~~~~~~~~~~p~~~~--~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~--~~~~~~~~~~-~~~ 424 (763)
. .+....+|..++ . +++|+.|++++|...+.+| .++.+++|+.|++++|..+. .++..+..-. ...
T Consensus 474 --~----n~~~g~iP~~l~f~~--L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 474 --S----DYAKQYENEELSWSN--LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp --S----HHHHHHTTSCCCGGG--CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred --c----ccccccCChhhhhcc--CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 0 000012677765 5 8999999999998888888 68999999999999986332 2322221100 113
Q ss_pred CCCCcceeeccccchhhhcCCCC-----cCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccCCCcccccee
Q 039689 425 SFPSLETLFFVDICSKLQGTLPE-----RLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKL 497 (763)
Q Consensus 425 ~f~~L~~L~l~~~~~~l~~~~~~-----~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~ 497 (763)
.+++|+.|++.+ +.+. .+|. .+++|+.|++++|. .++ .+..+++|++|++++|....++ .
T Consensus 546 ~l~~L~~L~Ls~--N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp--~------- 612 (876)
T 4ecn_A 546 TGPKIQIFYMGY--NNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIP--E------- 612 (876)
T ss_dssp TTTTCCEEECCS--SCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCC--T-------
T ss_pred ccCCccEEEeeC--CcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccch--H-------
Confidence 466888888877 3443 4443 56677777777765 233 5566777777777777644211 1
Q ss_pred ccccchhhhhhcCCCCC-CceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccc--
Q 039689 498 VHSRDMAKEVFEQGLPK-LERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPE-- 574 (763)
Q Consensus 498 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~-- 574 (763)
.+..+++ |+.|++++|... .+|..+..+. ... |+.|++++|...+.+|.
T Consensus 613 ----------~l~~l~~~L~~L~Ls~N~L~--------~lp~~~~~~~---~~~-------L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 613 ----------DFCAFTDQVEGLGFSHNKLK--------YIPNIFNAKS---VYV-------MGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp ----------TSCEECTTCCEEECCSSCCC--------SCCSCCCTTC---SSC-------EEEEECCSSCTTTTSSSCS
T ss_pred ----------HHhhccccCCEEECcCCCCC--------cCchhhhccc---cCC-------CCEEECcCCcCCCccccch
Confidence 1244566 888888887633 3343222110 001 44555555433222221
Q ss_pred -hhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcC------CCCCcceEeeccCCCcc
Q 039689 575 -AWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQN------SSTSLESLAIDSCDSLT 645 (763)
Q Consensus 575 -~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~------~l~~L~~L~l~~c~~l~ 645 (763)
......+++|+.|++++|. +..+|. +..+++|+.|++++| .+..+|...+.. .+++|+.|++++| .++
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred hhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc
Confidence 1111124588899998765 456665 246788999999888 555777765311 2238899999988 677
Q ss_pred ccccccC---CCCCcEEEEecCCCC-------CCCccceEEecCC----CCC-ccccCC---CCCCcCeEeeccCCCCcc
Q 039689 646 YIARIQL---PPSLKRLIIFRCDNL-------RFNSLRKLKISGG----CPD-LVSSPR---FPASLTELKISDMPSLER 707 (763)
Q Consensus 646 ~l~~~~~---~~~L~~L~l~~c~~l-------~~~~L~~L~l~~~----~~~-l~~~~~---~~~~L~~L~l~~~~~l~~ 707 (763)
.+|.... .++|+.|++++|.-- .+++|+.|+++++ ++. ...+|. .+++|++|++++| .++.
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK 820 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence 7765432 456666666555321 2344555555430 011 122222 2345555555553 3355
Q ss_pred ccCCCCCCCCcCceecccC
Q 039689 708 LSSIGENLTSLKFLDLDNC 726 (763)
Q Consensus 708 ip~~~~~l~~L~~L~l~~c 726 (763)
+|..+. ++|+.|++++|
T Consensus 821 Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CCSCCC--SSSCEEECCSC
T ss_pred cCHhhc--CCCCEEECCCC
Confidence 554332 35555555554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1e-26 Score=261.09 Aligned_cols=430 Identities=20% Similarity=0.158 Sum_probs=248.9
Q ss_pred hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNL 266 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L 266 (763)
+|..+. ++|++|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--cc
Confidence 444443 79999999999999986 7899999999999999999988 67899999999999999 578899987 89
Q ss_pred ccccccccCCcccccccc---cCCCccCCCceeeecCcccccCcccchhhhhcCcccc--cceEEeeccCCCCCCccHHH
Q 039689 267 TKLHHLNNSNVGSLEEML---MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNL--KALYLQWGVRDAVEPKTETQ 341 (763)
Q Consensus 267 ~~L~~L~l~~~~~l~~l~---~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~~~~~~~~ 341 (763)
++|++|++++|. +..++ .++++++|+ .|++.+.. +.. ..+..+++| +.|++++|....
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~-~L~L~~n~----l~~---~~~~~l~~L~L~~L~L~~n~l~~-------- 183 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLT-FLGLSAAK----FRQ---LDLLPVAHLHLSCILLDLVSYHI-------- 183 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGCTTCC-EEEEECSB----CCT---TTTGGGTTSCEEEEEEEESSCCC--------
T ss_pred ccCCEEECCCCC-ccccCchHhhcccCccc-EEecCCCc----ccc---CchhhhhhceeeEEEeecccccc--------
Confidence 999999999998 66544 355566666 55555411 111 122333333 666665553200
Q ss_pred HhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCC----ceEeCc
Q 039689 342 VIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGR----VKIVGS 415 (763)
Q Consensus 342 ~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~----l~~~~~ 415 (763)
....|.++..... ..-.+++++|.....++ .+..+++|+.++++++.. +.....
T Consensus 184 -------------------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~ 243 (562)
T 3a79_B 184 -------------------KGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243 (562)
T ss_dssp -------------------CSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred -------------------cccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH
Confidence 0111222221001 11133444444433333 344556666666665421 000000
Q ss_pred cccCCCcCCCCCCcceeeccccc---hhhhcCCC-CcCCcccEEEEecCc---chhhcC-----CCCCcccEEEEecCCc
Q 039689 416 EFYGSSCSVSFPSLETLFFVDIC---SKLQGTLP-ERLLLLEKLNIFRCE---QLLVTL-----QCLPALRELEIDGCKG 483 (763)
Q Consensus 416 ~~~~~~~~~~f~~L~~L~l~~~~---~~l~~~~~-~~~~~L~~L~l~~~~---~l~~~l-----~~l~~L~~L~l~~~~~ 483 (763)
.+ ...++|+.+++.+.- ..+.+..+ ...++|++|++.+|. .++..+ +.++.|+.+++..+..
T Consensus 244 ~l------~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~ 317 (562)
T 3a79_B 244 EL------TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317 (562)
T ss_dssp HH------HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred HH------hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence 11 124555555555420 11110000 123477888887775 222222 3344444444444332
Q ss_pred ccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeee
Q 039689 484 VVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKI 563 (763)
Q Consensus 484 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l 563 (763)
. ++. ...... ....+|++|++++|..... ..+..+++|+.|++++
T Consensus 318 -~---~p~-----------~~~~~~-~~~~~L~~L~l~~n~~~~~------~~~~~l~~L~~L~l~~------------- 362 (562)
T 3a79_B 318 -L---FSK-----------EALYSV-FAEMNIKMLSISDTPFIHM------VCPPSPSSFTFLNFTQ------------- 362 (562)
T ss_dssp -S---SCH-----------HHHHHH-HHTCCCSEEEEESSCCCCC------CCCSSCCCCCEEECCS-------------
T ss_pred -e---cCh-----------hhhhhh-hccCcceEEEccCCCcccc------cCccCCCCceEEECCC-------------
Confidence 1 000 000000 0125688888888764321 1224445555544444
Q ss_pred ccCCCccc-ccchhhhcCCCCcceEEEecCccccccCC----CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEee
Q 039689 564 EDCNALES-LPEAWMHNSNSSLESLKIRSCNSLVSFPD----FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAI 638 (763)
Q Consensus 564 ~~~~~l~~-l~~~~~~~~l~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 638 (763)
+.++. +|..+ ..+++|++|++++|. ++.++. +..+++|++|++++|.....+|...+ ..+++|+.|++
T Consensus 363 ---n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~L~~L~l 435 (562)
T 3a79_B 363 ---NVFTDSVFQGC--STLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNL 435 (562)
T ss_dssp ---SCCCTTTTTTC--CSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-CCCTTCCEEEC
T ss_pred ---Cccccchhhhh--cccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-cCcccCCEEEC
Confidence 44444 44432 237888888887764 454432 56778888888888865544766533 67788888888
Q ss_pred ccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCC-CCC
Q 039689 639 DSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSI-GEN 714 (763)
Q Consensus 639 ~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~-~~~ 714 (763)
++| .++......++++| +.|++++ +.+..+|. .+++|++|++++ +.++.+|.. +..
T Consensus 436 ~~n-~l~~~~~~~l~~~L----------------~~L~L~~--N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~ 495 (562)
T 3a79_B 436 SSN-MLTGSVFRCLPPKV----------------KVLDLHN--NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDR 495 (562)
T ss_dssp CSS-CCCGGGGSSCCTTC----------------SEEECCS--SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTT
T ss_pred CCC-CCCcchhhhhcCcC----------------CEEECCC--CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhc
Confidence 888 44332222222344 4444443 24444544 457899999998 678889987 688
Q ss_pred CCCcCceecccCCC
Q 039689 715 LTSLKFLDLDNCPK 728 (763)
Q Consensus 715 l~~L~~L~l~~c~~ 728 (763)
+++|++|+++++|-
T Consensus 496 l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 496 LTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTCCCEECCSCCB
T ss_pred CCCCCEEEecCCCc
Confidence 99999999999863
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.2e-26 Score=263.60 Aligned_cols=111 Identities=24% Similarity=0.339 Sum_probs=93.7
Q ss_pred hhhhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-c
Q 039689 187 QNVLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-M 263 (763)
Q Consensus 187 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i 263 (763)
...+.+|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|.++.+|. .|+++++|++|+|++| .+..+|+. |
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~ 144 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI 144 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhh
Confidence 334567899999999999999999995 679999999999999999999975 6899999999999994 77788764 9
Q ss_pred cCcccccccccCCcccccccc--c-CCCccCCCceeeecC
Q 039689 264 GNLTKLHHLNNSNVGSLEEML--M-LKSLVHLQGTLEISR 300 (763)
Q Consensus 264 ~~L~~L~~L~l~~~~~l~~l~--~-l~~L~~L~~~L~~~~ 300 (763)
+++++|++|++++|. +..++ . +..++.|+ .|.+.+
T Consensus 145 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~-~L~L~~ 182 (635)
T 4g8a_A 145 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE-HLDLSS 182 (635)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC-EEECCS
T ss_pred hcCcccCeeccccCc-cccCCCchhhccchhhh-hhcccC
Confidence 999999999999997 65432 2 56677777 777755
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.2e-26 Score=251.49 Aligned_cols=380 Identities=21% Similarity=0.226 Sum_probs=222.7
Q ss_pred CcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCC
Q 039689 213 PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHL 292 (763)
Q Consensus 213 p~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L 292 (763)
|+.+ ..++|++|++++|.+..+|++|++|++|++|++++|...+.+|.+++++++|+.+++.+|..
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------- 70 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------- 70 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence 4444 46899999999999999999999999999999999877779999999999998888887751
Q ss_pred CceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCC
Q 039689 293 QGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSL 372 (763)
Q Consensus 293 ~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~ 372 (763)
.+++.|+++.+ ....+|..
T Consensus 71 --------------------------~~l~~L~l~~~------------------------------~l~~lp~~----- 89 (454)
T 1jl5_A 71 --------------------------RQAHELELNNL------------------------------GLSSLPEL----- 89 (454)
T ss_dssp --------------------------HTCSEEECTTS------------------------------CCSCCCSC-----
T ss_pred --------------------------cCCCEEEecCC------------------------------ccccCCCC-----
Confidence 12233333222 22223321
Q ss_pred CCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCC--CcCC
Q 039689 373 FSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP--ERLL 450 (763)
Q Consensus 373 ~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~--~~~~ 450 (763)
.++|+.|++++|...+ +|.. +++|+.|+++++.... ++ ...++|++|++.+ +.+.+ +| ..++
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~-l~---------~~~~~L~~L~L~~--n~l~~-lp~~~~l~ 153 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKA-LS---------DLPPLLEYLGVSN--NQLEK-LPELQNSS 153 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CC---------SCCTTCCEEECCS--SCCSS-CCCCTTCT
T ss_pred cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCc-cc---------CCCCCCCEEECcC--CCCCC-CcccCCCC
Confidence 3567777777775433 5532 3677777777653221 11 0125677777766 23332 33 3456
Q ss_pred cccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccc
Q 039689 451 LLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLW 530 (763)
Q Consensus 451 ~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 530 (763)
+|++|++++|.-. ......++|++|++++|.....+. +..+++|++|++++|...
T Consensus 154 ~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~~--------------------~~~l~~L~~L~l~~N~l~---- 208 (454)
T 1jl5_A 154 FLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPE--------------------LQNLPFLTAIYADNNSLK---- 208 (454)
T ss_dssp TCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCC--------------------CTTCTTCCEEECCSSCCS----
T ss_pred CCCEEECCCCcCc-ccCCCcccccEEECcCCcCCcCcc--------------------ccCCCCCCEEECCCCcCC----
Confidence 6777777776422 111224577777777765443221 256788888888888643
Q ss_pred cccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEE
Q 039689 531 RSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTV 610 (763)
Q Consensus 531 ~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L 610 (763)
.+|...++|+.|+ +++ +.++.+|. + ..+++|++|++++|. ++.+|. .+++|++|
T Consensus 209 ----~l~~~~~~L~~L~---------------l~~-n~l~~lp~-~--~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L 262 (454)
T 1jl5_A 209 ----KLPDLPLSLESIV---------------AGN-NILEELPE-L--QNLPFLTTIYADNNL-LKTLPD--LPPSLEAL 262 (454)
T ss_dssp ----SCCCCCTTCCEEE---------------CCS-SCCSSCCC-C--TTCTTCCEEECCSSC-CSSCCS--CCTTCCEE
T ss_pred ----cCCCCcCcccEEE---------------CcC-CcCCcccc-c--CCCCCCCEEECCCCc-CCcccc--cccccCEE
Confidence 3444444544444 444 45667774 2 248899999998765 566764 45789999
Q ss_pred EEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCC---CC-CccceEEecCCCCCccc
Q 039689 611 TIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNL---RF-NSLRKLKISGGCPDLVS 686 (763)
Q Consensus 611 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l---~~-~~L~~L~l~~~~~~l~~ 686 (763)
++++| .++.+|. .+++|+.|++++| .++.++ .++++|+.|++++|.-- .+ .+|+.|++++ +.+..
T Consensus 263 ~l~~N-~l~~l~~-----~~~~L~~L~ls~N-~l~~l~--~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~--N~l~~ 331 (454)
T 1jl5_A 263 NVRDN-YLTDLPE-----LPQSLTFLDVSEN-IFSGLS--ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN--NKLIE 331 (454)
T ss_dssp ECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSEES--CCCTTCCEEECCSSCCSEECCCCTTCCEEECCS--SCCSC
T ss_pred ECCCC-cccccCc-----ccCcCCEEECcCC-ccCccc--CcCCcCCEEECcCCcCCcccCCcCcCCEEECCC--Ccccc
Confidence 99998 4555664 3478999999988 666665 34678999998877533 22 4899999987 67788
Q ss_pred cCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCcccc---CC-C-c------------ccccceeeeccC
Q 039689 687 SPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS---KQ-G-L------------PKSLLRLIIDEC 749 (763)
Q Consensus 687 ~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~---~~-~-~------------~~~L~~L~i~~C 749 (763)
+|..+++|++|++++ +.++.+|. .+++|++|++++| .++.+| .. . + +++|+.|+++++
T Consensus 332 lp~~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 332 LPALPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC--------------------
T ss_pred ccccCCcCCEEECCC-Cccccccc---hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 888889999999999 57888996 5799999999997 555543 21 1 1 267999999988
Q ss_pred h
Q 039689 750 P 750 (763)
Q Consensus 750 ~ 750 (763)
+
T Consensus 407 ~ 407 (454)
T 1jl5_A 407 P 407 (454)
T ss_dssp -
T ss_pred c
Confidence 6
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.8e-26 Score=247.74 Aligned_cols=304 Identities=17% Similarity=0.107 Sum_probs=191.4
Q ss_pred ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
.+..+++|++|++++|.++.+| .|+.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 4566889999999999999887 6899999999999999999986 899999999999994 677775 899999999
Q ss_pred cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689 272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351 (763)
Q Consensus 272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 351 (763)
|++++|. +..++ ++.+ ++|+.|+++.|..
T Consensus 111 L~L~~N~-l~~l~-~~~l-----------------------------~~L~~L~l~~N~l-------------------- 139 (457)
T 3bz5_A 111 LNCDTNK-LTKLD-VSQN-----------------------------PLLTYLNCARNTL-------------------- 139 (457)
T ss_dssp EECCSSC-CSCCC-CTTC-----------------------------TTCCEEECTTSCC--------------------
T ss_pred EECCCCc-CCeec-CCCC-----------------------------CcCCEEECCCCcc--------------------
Confidence 9999997 55443 3333 3444444443321
Q ss_pred ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
..++ ++. +++|+.|++++|...+.+ .++.+++|+.|+++++.... ++ ...+++|+.
T Consensus 140 ----------~~l~--l~~--l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--------l~~l~~L~~ 195 (457)
T 3bz5_A 140 ----------TEID--VSH--NTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--------VSQNKLLNR 195 (457)
T ss_dssp ----------SCCC--CTT--CTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--------CTTCTTCCE
T ss_pred ----------ceec--ccc--CCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--------cccCCCCCE
Confidence 1111 122 567777777777655555 46666777777777653221 11 112444444
Q ss_pred eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCC
Q 039689 432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQG 511 (763)
Q Consensus 432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 511 (763)
|++.+ |.--...+..+++|++|++++|.....+ ...
T Consensus 196 L~l~~-----------------------N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---------------------~~~ 231 (457)
T 3bz5_A 196 LNCDT-----------------------NNITKLDLNQNIQLTFLDCSSNKLTEID---------------------VTP 231 (457)
T ss_dssp EECCS-----------------------SCCSCCCCTTCTTCSEEECCSSCCSCCC---------------------CTT
T ss_pred EECcC-----------------------CcCCeeccccCCCCCEEECcCCcccccC---------------------ccc
Confidence 44443 3221113455666777777766543321 144
Q ss_pred CCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEec
Q 039689 512 LPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS 591 (763)
Q Consensus 512 ~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 591 (763)
+++|+.|++++|.... ..+..+++|+.|+++... |+.|++++|..++.+|.. .+++|+.|++++
T Consensus 232 l~~L~~L~l~~N~l~~-------~~~~~l~~L~~L~l~~n~-----L~~L~l~~n~~~~~~~~~----~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTE-------LDVSTLSKLTTLHCIQTD-----LLEIDLTHNTQLIYFQAE----GCRKIKELDVTH 295 (457)
T ss_dssp CTTCSEEECCSSCCSC-------CCCTTCTTCCEEECTTCC-----CSCCCCTTCTTCCEEECT----TCTTCCCCCCTT
T ss_pred cCCCCEEEeeCCcCCC-------cCHHHCCCCCEEeccCCC-----CCEEECCCCccCCccccc----ccccCCEEECCC
Confidence 5667777777765432 123456667766665543 777777777766666632 367777888877
Q ss_pred CccccccCC---------CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccC
Q 039689 592 CNSLVSFPD---------FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSC 641 (763)
Q Consensus 592 c~~l~~~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 641 (763)
|..++.+|. +...++|++|++++| .++.++ + ..+++|+.|++++|
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l--~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--V--SHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--C--TTCTTCSEEECCSS
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--c--ccCCcCcEEECCCC
Confidence 776665552 122345666666665 333342 2 45666666666665
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.9e-24 Score=236.56 Aligned_cols=98 Identities=22% Similarity=0.367 Sum_probs=77.5
Q ss_pred CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689 196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS 275 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 275 (763)
+++++.|+++++.+..+|. +..+++|++|+|++|.++.+|+ ++++++|++|++++| .+..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 5678899999999888874 7889999999999999998877 899999999999984 6777766 8899999999999
Q ss_pred CcccccccccCCCccCCCceeeec
Q 039689 276 NVGSLEEMLMLKSLVHLQGTLEIS 299 (763)
Q Consensus 276 ~~~~l~~l~~l~~L~~L~~~L~~~ 299 (763)
+|. +..++.+..+++|+ .|.+.
T Consensus 121 ~n~-l~~~~~~~~l~~L~-~L~l~ 142 (466)
T 1o6v_A 121 NNQ-ITDIDPLKNLTNLN-RLELS 142 (466)
T ss_dssp SSC-CCCCGGGTTCTTCS-EEEEE
T ss_pred CCC-CCCChHHcCCCCCC-EEECC
Confidence 887 66555555555554 44443
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.4e-24 Score=235.75 Aligned_cols=327 Identities=18% Similarity=0.221 Sum_probs=198.9
Q ss_pred ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.++. ++++++|++|++++| .+..+|. ++++++|++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence 46778999999999999999977 9999999999999999999887 999999999999995 7888876 999999999
Q ss_pred cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689 272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351 (763)
Q Consensus 272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 351 (763)
|++++|. +..++.+..+++|+ .+.+.+ .. ... ..+.++++|+.|++++|..
T Consensus 139 L~l~~n~-l~~~~~~~~l~~L~-~L~l~~--~~---~~~--~~~~~l~~L~~L~l~~n~l-------------------- 189 (466)
T 1o6v_A 139 LELSSNT-ISDISALSGLTSLQ-QLSFGN--QV---TDL--KPLANLTTLERLDISSNKV-------------------- 189 (466)
T ss_dssp EEEEEEE-ECCCGGGTTCTTCS-EEEEEE--SC---CCC--GGGTTCTTCCEEECCSSCC--------------------
T ss_pred EECCCCc-cCCChhhccCCccc-EeecCC--cc---cCc--hhhccCCCCCEEECcCCcC--------------------
Confidence 9999997 77777666666666 555532 11 111 1244445555555543321
Q ss_pred ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
..++ .+.. +++|+.|++++|... .+++++.+++|+.|+++++..... +
T Consensus 190 ----------~~~~-~l~~--l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~----------------- 237 (466)
T 1o6v_A 190 ----------SDIS-VLAK--LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDI-G----------------- 237 (466)
T ss_dssp ----------CCCG-GGGG--CTTCSEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-----------------
T ss_pred ----------CCCh-hhcc--CCCCCEEEecCCccc-ccccccccCCCCEEECCCCCcccc-h-----------------
Confidence 1111 1111 455666666655422 222344455555555554321110 0
Q ss_pred eeccccchhhhcCCCCcCCcccEEEEecCcchh-hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcC
Q 039689 432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL-VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQ 510 (763)
Q Consensus 432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 510 (763)
....+++|+.|++.+|.... ..+..+++|++|++++|....... +.
T Consensus 238 -------------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~ 284 (466)
T 1o6v_A 238 -------------TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--------------------LA 284 (466)
T ss_dssp -------------GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--------------------GT
T ss_pred -------------hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--------------------cc
Confidence 00123445555555443111 125566777777777765332111 24
Q ss_pred CCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEe
Q 039689 511 GLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIR 590 (763)
Q Consensus 511 ~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~ 590 (763)
.+++|++|++++|...... . ...+++ |+.|++++| .+..+++. ..+++|++|+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~-----~-~~~l~~---------------L~~L~L~~n-~l~~~~~~---~~l~~L~~L~l~ 339 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDIS-----P-ISNLKN---------------LTYLTLYFN-NISDISPV---SSLTKLQRLFFY 339 (466)
T ss_dssp TCTTCSEEECCSSCCSCCG-----G-GGGCTT---------------CSEEECCSS-CCSCCGGG---GGCTTCCEEECC
T ss_pred CCCccCeEEcCCCcccCch-----h-hcCCCC---------------CCEEECcCC-cCCCchhh---ccCccCCEeECC
Confidence 5677777777777543210 0 022333 444444443 34444431 236778888887
Q ss_pred cCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCcccc
Q 039689 591 SCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYI 647 (763)
Q Consensus 591 ~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 647 (763)
+|. +..++.+..+++|+.|++++|...+..| + ..+++|+.|++++| .+..+
T Consensus 340 ~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n-~~~~~ 390 (466)
T 1o6v_A 340 NNK-VSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQ-AWTNA 390 (466)
T ss_dssp SSC-CCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCE-EEECC
T ss_pred CCc-cCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCC-cccCC
Confidence 764 5556666777788888888775444333 3 67777888888777 44443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8.1e-24 Score=231.50 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=51.4
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCch-hc-chhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIE-IL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~-~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
++|++|++++|.++.+ |..|+++++|++|+|++|.+. .+ |..|+++++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5666777776666665 556666777777777766664 34 44566667777777766433333355566666666666
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
+++|.
T Consensus 110 L~~n~ 114 (455)
T 3v47_A 110 LTQCN 114 (455)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 66665
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=5.7e-24 Score=232.74 Aligned_cols=371 Identities=13% Similarity=0.105 Sum_probs=190.2
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 277 (763)
+.++.+++.++.+|. + .++|++|+|++|.++.+ |..|+++++|++|++++|.....+| ..|+++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 467778888888887 3 38899999999999977 7789999999999999965544664 45899999999999999
Q ss_pred cccccc-c-cCCCccCCCceeeecCcccccCcccchh--hhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689 278 GSLEEM-L-MLKSLVHLQGTLEISRLENVKGVGDASE--VQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE 353 (763)
Q Consensus 278 ~~l~~l-~-~l~~L~~L~~~L~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 353 (763)
. +..+ | .+.++++|+ .|.+.+.. +..... ..+..+++|+.|++++|..
T Consensus 90 ~-l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~~~l~~L~~L~L~~n~l---------------------- 141 (455)
T 3v47_A 90 Q-FLQLETGAFNGLANLE-VLTLTQCN----LDGAVLSGNFFKPLTSLEMLVLRDNNI---------------------- 141 (455)
T ss_dssp T-TCEECTTTTTTCTTCC-EEECTTSC----CBTHHHHSSTTTTCTTCCEEECCSSBC----------------------
T ss_pred c-cCccChhhccCcccCC-EEeCCCCC----CCccccCcccccCcccCCEEECCCCcc----------------------
Confidence 7 5544 2 255555555 55544321 111011 1133344444444433321
Q ss_pred EEEeeeCCCCC-CCc-cCCCCCCCceEEEEeccCCCCCCC-CCCCC--CCCCcceecccCCceEeCccccCCCcCCCCCC
Q 039689 354 LTITGYGGTKF-PIW-LGDSLFSKLMLLKFDNCGTCTSLP-SVGQL--PFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS 428 (763)
Q Consensus 354 L~~~~~~~~~~-p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~ 428 (763)
..+ |.. +.. +++|+.|++++|......+ .+..+ ++|+.|+++++.........+ +
T Consensus 142 --------~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~-~--------- 201 (455)
T 3v47_A 142 --------KKIQPASFFLN--MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL-G--------- 201 (455)
T ss_dssp --------CSCCCCGGGGG--CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT-T---------
T ss_pred --------CccCcccccCC--CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc-c---------
Confidence 111 111 222 3444555554443322222 22222 233333333322111000000 0
Q ss_pred cceeeccccchhhhcCCCCcCCcccEEEEecCcchh---hc---CCCCCcccEEEEecCCcccccC-CCccccceecccc
Q 039689 429 LETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL---VT---LQCLPALRELEIDGCKGVVLSS-PTDLSSLKLVHSR 501 (763)
Q Consensus 429 L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~---~~---l~~l~~L~~L~l~~~~~~~~~~-~~~L~~L~~~~~~ 501 (763)
.... ..+..+++|++|++++|.... .. ....++|+.|++++|....... ...+....
T Consensus 202 ----------~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----- 265 (455)
T 3v47_A 202 ----------WEKC-GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD----- 265 (455)
T ss_dssp ----------HHHH-CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-----
T ss_pred ----------cccc-ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc-----
Confidence 0000 001123566666666664211 11 1123677777777764332110 00000000
Q ss_pred chhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCC
Q 039689 502 DMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSN 581 (763)
Q Consensus 502 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l 581 (763)
.... .....++|++|++++|.... ..|..+..+.. |++|++++ +.++.+++..+. .+
T Consensus 266 ~~~~--~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~------------L~~L~Ls~-n~l~~~~~~~~~-~l 322 (455)
T 3v47_A 266 NFTF--KGLEASGVKTCDLSKSKIFA-------LLKSVFSHFTD------------LEQLTLAQ-NEINKIDDNAFW-GL 322 (455)
T ss_dssp TTTT--GGGTTSCCCEEECCSSCCCE-------ECTTTTTTCTT------------CCEEECTT-SCCCEECTTTTT-TC
T ss_pred cccc--ccccccCceEEEecCccccc-------cchhhcccCCC------------CCEEECCC-CcccccChhHhc-Cc
Confidence 0000 00124677788887776543 22322222221 34444444 445444433222 36
Q ss_pred CCcceEEEecCccccccC-C-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC--CCCCc
Q 039689 582 SSLESLKIRSCNSLVSFP-D-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL--PPSLK 657 (763)
Q Consensus 582 ~~L~~L~l~~c~~l~~~~-~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~ 657 (763)
++|++|++++|.. +.++ . +..+++|++|++++|...+..|..+ ..+++|+.|++++| .++.++...+ .++|+
T Consensus 323 ~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSF--LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred ccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCCcccccChhhc--cccccccEEECCCC-ccccCCHhHhccCCccc
Confidence 7777777777653 4443 2 4566777888887774433335455 66777888888776 6666665433 34555
Q ss_pred EEEEecC
Q 039689 658 RLIIFRC 664 (763)
Q Consensus 658 ~L~l~~c 664 (763)
.|++.++
T Consensus 399 ~L~l~~N 405 (455)
T 3v47_A 399 KIWLHTN 405 (455)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 5555443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.7e-23 Score=226.90 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=203.9
Q ss_pred ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++++| .+..+| ++.+++|++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCE
Confidence 5788999999999999999986 899999999999999999986 899999999999994 777776 899999999
Q ss_pred cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689 272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351 (763)
Q Consensus 272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 351 (763)
|++++|. +..++ ++.+++|+ .+.+......... .+..+++|+.|++++|.
T Consensus 132 L~l~~N~-l~~l~-l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~--------------------- 181 (457)
T 3bz5_A 132 LNCARNT-LTEID-VSHNTQLT-ELDCHLNKKITKL------DVTPQTQLTTLDCSFNK--------------------- 181 (457)
T ss_dssp EECTTSC-CSCCC-CTTCTTCC-EEECTTCSCCCCC------CCTTCTTCCEEECCSSC---------------------
T ss_pred EECCCCc-cceec-cccCCcCC-EEECCCCCccccc------ccccCCcCCEEECCCCc---------------------
Confidence 9999998 66654 56666666 5655543222211 24445555555554442
Q ss_pred ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
...+| +.. +++|+.|++++|.... + +++.+++|+.|++++|.... ++ ...+++|+.
T Consensus 182 ---------l~~l~--l~~--l~~L~~L~l~~N~l~~-~-~l~~l~~L~~L~Ls~N~l~~-ip--------~~~l~~L~~ 237 (457)
T 3bz5_A 182 ---------ITELD--VSQ--NKLLNRLNCDTNNITK-L-DLNQNIQLTFLDCSSNKLTE-ID--------VTPLTQLTY 237 (457)
T ss_dssp ---------CCCCC--CTT--CTTCCEEECCSSCCSC-C-CCTTCTTCSEEECCSSCCSC-CC--------CTTCTTCSE
T ss_pred ---------cceec--ccc--CCCCCEEECcCCcCCe-e-ccccCCCCCEEECcCCcccc-cC--------ccccCCCCE
Confidence 22232 222 5566666666664322 2 35556666666666543322 11 122455555
Q ss_pred eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCC
Q 039689 432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQG 511 (763)
Q Consensus 432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 511 (763)
|++.+ +.+.+..+..+++|+.|.+.++ +|+.|++++|.... ......
T Consensus 238 L~l~~--N~l~~~~~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~--------------------~~~~~~ 284 (457)
T 3bz5_A 238 FDCSV--NPLTELDVSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLI--------------------YFQAEG 284 (457)
T ss_dssp EECCS--SCCSCCCCTTCTTCCEEECTTC-----------CCSCCCCTTCTTCC--------------------EEECTT
T ss_pred EEeeC--CcCCCcCHHHCCCCCEEeccCC-----------CCCEEECCCCccCC--------------------cccccc
Confidence 55554 2333222333444444433321 23334444433111 011256
Q ss_pred CCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEec
Q 039689 512 LPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS 591 (763)
Q Consensus 512 ~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 591 (763)
+++|+.|++++|..++ .+|...++|+.|++++++. |+.|++++ +.++.++ + ..+++|+.|++++
T Consensus 285 l~~L~~L~Ls~n~~l~-------~l~~~~~~L~~L~l~~~~~----L~~L~L~~-N~l~~l~--l--~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLY-------LLDCQAAGITELDLSQNPK----LVYLYLNN-TELTELD--V--SHNTKLKSLSCVN 348 (457)
T ss_dssp CTTCCCCCCTTCTTCC-------EEECTTCCCSCCCCTTCTT----CCEEECTT-CCCSCCC--C--TTCTTCSEEECCS
T ss_pred cccCCEEECCCCcccc-------eeccCCCcceEechhhccc----CCEEECCC-Ccccccc--c--ccCCcCcEEECCC
Confidence 7899999999998776 5666677888888888876 88899888 4566664 2 2378899999977
Q ss_pred CccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccC
Q 039689 592 CNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSC 641 (763)
Q Consensus 592 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 641 (763)
|. +..++ .|..|++++|..-+. ..+..|+.++++++
T Consensus 349 N~-l~~l~------~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 349 AH-IQDFS------SVGKIPALNNNFEAE-------GQTITMPKETLTNN 384 (457)
T ss_dssp SC-CCBCT------TGGGSSGGGTSEEEE-------EEEEECCCBCCBTT
T ss_pred CC-CCCcc------ccccccccCCcEEec-------ceeeecCccccccC
Confidence 55 44443 334444444321111 12345666666666
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.7e-23 Score=218.55 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=74.5
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. ++.+++|++|++++| .+..+| .++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 457889999999999988865 8889999999999999999877 999999999999995 677776 599999999999
Q ss_pred cCCccccccccc
Q 039689 274 NSNVGSLEEMLM 285 (763)
Q Consensus 274 l~~~~~l~~l~~ 285 (763)
+++|. +..++.
T Consensus 117 l~~n~-i~~~~~ 127 (347)
T 4fmz_A 117 LNEDN-ISDISP 127 (347)
T ss_dssp CTTSC-CCCCGG
T ss_pred CcCCc-ccCchh
Confidence 99987 544443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-22 Score=216.69 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCCcccEEEecCCCCCccCcc-cCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCcccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPKA-IENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHH 271 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 271 (763)
.++++++|+++++.++.+|.. |..+++|++|+|++|.++.+| ..|+.+++|++|++++| .+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 357888888888888888754 678888888888888888775 47888888888888884 555554 44788888888
Q ss_pred cccCCcc
Q 039689 272 LNNSNVG 278 (763)
Q Consensus 272 L~l~~~~ 278 (763)
|++++|.
T Consensus 122 L~L~~n~ 128 (390)
T 3o6n_A 122 LVLERND 128 (390)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8888886
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.1e-22 Score=213.85 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=56.2
Q ss_pred ccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccc
Q 039689 215 AIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEML 284 (763)
Q Consensus 215 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~ 284 (763)
.+..+++|++|+++++.+..+|. ++.+++|++|++++| .+..+|. +..+++|++|++++|. +..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~ 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDIS 104 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred cchhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCch
Confidence 35678999999999999998874 899999999999995 7888877 9999999999999987 54443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=9.9e-22 Score=216.12 Aligned_cols=196 Identities=19% Similarity=0.186 Sum_probs=102.3
Q ss_pred CCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCCc
Q 039689 373 FSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLL 451 (763)
Q Consensus 373 ~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~ 451 (763)
+++|+.|++++|......+ .++.+++|+.|++++|.........+ ..+++
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----------------------------~~l~~ 177 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----------------------------SHLHG 177 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----------------------------TTCTT
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh-----------------------------cccCC
Confidence 5677777777775433323 56666667777666643211110000 12344
Q ss_pred ccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccc
Q 039689 452 LEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTY 528 (763)
Q Consensus 452 L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 528 (763)
|+.|++.++.. ....+..+++|++|++++|......... .....+|++|++++|...
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~~~L~~L~l~~n~l~-- 237 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN------------------CLYGLNLTSLSITHCNLT-- 237 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT------------------TTTTCCCSEEEEESSCCC--
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc------------------cccCccccEEECcCCccc--
Confidence 44444444431 1124556677777777776533211100 012336777777777532
Q ss_pred cccccCcCC----ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCC
Q 039689 529 LWRSETRLP----QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FAL 603 (763)
Q Consensus 529 l~~~~~~~p----~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~ 603 (763)
.+| ..+++|+. |++++ +.++.++...+. .+++|++|++++|......|. +..
T Consensus 238 ------~~~~~~~~~l~~L~~---------------L~Ls~-n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 238 ------AVPYLAVRHLVYLRF---------------LNLSY-NPISTIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp ------SCCHHHHTTCTTCCE---------------EECCS-SCCCEECTTSCT-TCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ------ccCHHHhcCccccCe---------------eECCC-CcCCccChhhcc-ccccCCEEECCCCccceECHHHhcC
Confidence 222 22333333 33433 445555544332 367777777776553332232 556
Q ss_pred CCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCC
Q 039689 604 PSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCD 642 (763)
Q Consensus 604 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 642 (763)
+++|++|++++| .++.++...+ ..+++|+.|++++|+
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEESVF-HSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGGGB-SCGGGCCEEECCSSC
T ss_pred cccCCEEECCCC-cCceeCHhHc-CCCcccCEEEccCCC
Confidence 677777777777 4555555433 566777777777763
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5e-22 Score=224.11 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCCcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHH 271 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~ 271 (763)
.+.++++|++++|.+..+|. .|..+++|++|+|++|.++.+| ..|+.+++|++|+|++| .+..+|+. |+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 35678888888888888864 4677888888888888888775 47888888888888885 45555544 688888888
Q ss_pred cccCCcc
Q 039689 272 LNNSNVG 278 (763)
Q Consensus 272 L~l~~~~ 278 (763)
|++++|.
T Consensus 128 L~L~~n~ 134 (597)
T 3oja_B 128 LVLERND 134 (597)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 8888876
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-21 Score=209.64 Aligned_cols=60 Identities=10% Similarity=0.241 Sum_probs=53.0
Q ss_pred CCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689 218 NLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 218 ~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 278 (763)
.+.++++|+++++.++.+|.. +..+++|++|++++| .+..+|. .++.+++|++|++++|.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC
Confidence 578999999999999999876 699999999999995 5666665 69999999999999987
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=213.21 Aligned_cols=295 Identities=19% Similarity=0.198 Sum_probs=196.9
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
+.+++|+|++|.++.+ |..|..+++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. ++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEE
Confidence 5788899999888887 57788889999999998888877 67888889999999988 467777765 78888999998
Q ss_pred cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689 274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE 353 (763)
Q Consensus 274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 353 (763)
+++|. +..++ ...+..+++|+.|+++.|.....
T Consensus 111 Ls~n~-i~~~~---------------------------~~~~~~l~~L~~L~l~~n~l~~~------------------- 143 (477)
T 2id5_A 111 ISENK-IVILL---------------------------DYMFQDLYNLKSLEVGDNDLVYI------------------- 143 (477)
T ss_dssp CTTSC-CCEEC---------------------------TTTTTTCTTCCEEEECCTTCCEE-------------------
T ss_pred CCCCc-cccCC---------------------------hhHccccccCCEEECCCCcccee-------------------
Confidence 88886 33221 22345566777777765522110
Q ss_pred EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
.|..+.. +++|+.|++++|.. ..++ .+..+++|+.|+++++.........| ..+++
T Consensus 144 ----------~~~~~~~--l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~------~~l~~--- 201 (477)
T 2id5_A 144 ----------SHRAFSG--LNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSF------KRLYR--- 201 (477)
T ss_dssp ----------CTTSSTT--CTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCCEECTTCS------CSCTT---
T ss_pred ----------ChhhccC--CCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCCCcCcEeChhhc------ccCcc---
Confidence 1233443 78999999999954 4455 48889999999999876544332222 12444
Q ss_pred eeccccchhhhcCCCCcCCcccEEEEecCcchh---hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhh
Q 039689 432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL---VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVF 508 (763)
Q Consensus 432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 508 (763)
|+.|++.+|.... .......+|++|++++|..... +...
T Consensus 202 --------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------------~~~~ 243 (477)
T 2id5_A 202 --------------------LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV------------------PYLA 243 (477)
T ss_dssp --------------------CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC------------------CHHH
T ss_pred --------------------cceeeCCCCccccccCcccccCccccEEECcCCccccc------------------CHHH
Confidence 4444444443222 1222345899999999864431 1223
Q ss_pred cCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEE
Q 039689 509 EQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLK 588 (763)
Q Consensus 509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 588 (763)
+..+++|++|++++|....... .....+++|+ .|++++ +.++.+++..+. .+++|++|+
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~---------------~L~L~~-n~l~~~~~~~~~-~l~~L~~L~ 302 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQ---------------EIQLVG-GQLAVVEPYAFR-GLNYLRVLN 302 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECT----TSCTTCTTCC---------------EEECCS-SCCSEECTTTBT-TCTTCCEEE
T ss_pred hcCccccCeeECCCCcCCccCh----hhccccccCC---------------EEECCC-CccceECHHHhc-CcccCCEEE
Confidence 4678999999999997543110 0112334444 455554 556666444233 489999999
Q ss_pred EecCccccccCC--CCCCCCccEEEEccCCCCCCC
Q 039689 589 IRSCNSLVSFPD--FALPSQLRTVTIKGCDALESL 621 (763)
Q Consensus 589 l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~ 621 (763)
+++|. ++.++. +..+++|++|++++|+..-.-
T Consensus 303 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 303 VSGNQ-LTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CCSSC-CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCCCc-CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 98875 566664 567789999999999754443
No 40
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.87 E-value=2e-23 Score=231.68 Aligned_cols=163 Identities=11% Similarity=0.151 Sum_probs=128.4
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccCCccChHHHHHH
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRV 80 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~ 80 (763)
+||+||+++||+.. .++++.+++++|+++|+|+||||+++|+.|+.+ .. +|...+....+.. ...++.+++++
T Consensus 297 ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~~~i~~~l~~ 369 (549)
T 2a5y_B 297 ECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GLVGVECITPY 369 (549)
T ss_dssp HHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CSSTTCCCSSS
T ss_pred HHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cHHHHHHHHhc
Confidence 58999999998653 257899999999999999999999999999876 32 2333343322221 23568889999
Q ss_pred HHhcCCHhHHHHhh-----------hhcccCCCCccCHHHHHHHHHHc--CCcccCCCcccHHHHHHHHHHHHHHCCCcc
Q 039689 81 SYHFLPPQLKQCFA-----------YCSLFPKDHEFQKEQIILLWAAE--GFLHQENSKRKMEDLGREFVEELHSRSLFH 147 (763)
Q Consensus 81 Sy~~L~~~~k~~fl-----------~~~~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~ 147 (763)
||++||+++|.||+ |||+||+|+.|+ ++.|+++ ||+........++++++ ++++|++|||++
T Consensus 370 Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~ 444 (549)
T 2a5y_B 370 SYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALL 444 (549)
T ss_dssp SSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCS
T ss_pred ccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCee
Confidence 99999999999999 999999999998 8899999 99987654667788888 999999999999
Q ss_pred cccC-CCCcceechhHHHHHHHHhcCceE
Q 039689 148 QSTY-DASRFVMHDLINDLTRWAAGETCF 175 (763)
Q Consensus 148 ~~~~-~~~~~~mhdli~~~~~~~~~~~~~ 175 (763)
.... ...+|+|||+||++|++++..++.
T Consensus 445 ~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 445 SGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp EEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred EecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8643 346799999999999999987763
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.9e-21 Score=216.80 Aligned_cols=60 Identities=10% Similarity=0.241 Sum_probs=52.4
Q ss_pred CCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689 218 NLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 218 ~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 278 (763)
.+.++++|++++|.+..+|.. ++.+++|++|+|++| .+..+|+ .|+.+++|++|++++|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 110 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA 110 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc
Confidence 478999999999999999866 689999999999995 5666654 79999999999999987
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.6e-20 Score=193.06 Aligned_cols=227 Identities=24% Similarity=0.316 Sum_probs=145.4
Q ss_pred CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN 274 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 274 (763)
...+++.|++++|.++.+|..++.+++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 46789999999999999999999999999999999999999999999999999999994 67799999999999999999
Q ss_pred CCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceE
Q 039689 275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLEL 354 (763)
Q Consensus 275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L 354 (763)
++|..+..+|.- +. .. .....+.++++|+.|++++|..
T Consensus 158 ~~n~~~~~~p~~-----~~-~~-------------~~~~~~~~l~~L~~L~L~~n~l----------------------- 195 (328)
T 4fcg_A 158 RACPELTELPEP-----LA-ST-------------DASGEHQGLVNLQSLRLEWTGI----------------------- 195 (328)
T ss_dssp EEETTCCCCCSC-----SE-EE-------------C-CCCEEESTTCCEEEEEEECC-----------------------
T ss_pred CCCCCccccChh-----Hh-hc-------------cchhhhccCCCCCEEECcCCCc-----------------------
Confidence 998755555530 00 00 0011244566777777766533
Q ss_pred EEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeec
Q 039689 355 TITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFF 434 (763)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l 434 (763)
..+|.++.. +++|+.|++++|......+.++.+++|++|++++|.....++..+. .+++|++|++
T Consensus 196 -------~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~------~l~~L~~L~L 260 (328)
T 4fcg_A 196 -------RSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG------GRAPLKRLIL 260 (328)
T ss_dssp -------CCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT------CCCCCCEEEC
T ss_pred -------CcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc------CCCCCCEEEC
Confidence 234444433 4555555555554332222444555555555555444443333222 2445555555
Q ss_pred cccchhhhcCCCC---cCCcccEEEEecCc---chhhcCCCCCcccEEEEecC
Q 039689 435 VDICSKLQGTLPE---RLLLLEKLNIFRCE---QLLVTLQCLPALRELEIDGC 481 (763)
Q Consensus 435 ~~~~~~l~~~~~~---~~~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~ 481 (763)
.+ +...+.+|. .+++|++|++++|. .++..+..+++|+.+++..+
T Consensus 261 ~~--n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 261 KD--CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TT--CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CC--CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 44 122223332 34555556665554 23345566777777776654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.5e-19 Score=186.52 Aligned_cols=83 Identities=30% Similarity=0.446 Sum_probs=70.2
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 274 (763)
.++++++++++.++.+|..+. ++|++|+|++|.++.+|. .|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 478999999999999987664 789999999999998865 7899999999999995 55555 778999999999999
Q ss_pred CCccccccc
Q 039689 275 SNVGSLEEM 283 (763)
Q Consensus 275 ~~~~~l~~l 283 (763)
++|. +..+
T Consensus 108 s~n~-l~~l 115 (330)
T 1xku_A 108 SKNQ-LKEL 115 (330)
T ss_dssp CSSC-CSBC
T ss_pred CCCc-CCcc
Confidence 9987 4443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=3.8e-19 Score=185.29 Aligned_cols=84 Identities=30% Similarity=0.392 Sum_probs=70.7
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 274 (763)
.++++++++++.++.+|..+. ++|++|++++|.++.+| ..|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 378999999999999998774 79999999999999884 57999999999999995 55555 777999999999999
Q ss_pred CCcccccccc
Q 039689 275 SNVGSLEEML 284 (763)
Q Consensus 275 ~~~~~l~~l~ 284 (763)
++|. +..+|
T Consensus 110 ~~n~-l~~l~ 118 (332)
T 2ft3_A 110 SKNH-LVEIP 118 (332)
T ss_dssp CSSC-CCSCC
T ss_pred CCCc-CCccC
Confidence 9987 44433
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=6.6e-19 Score=196.42 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=66.6
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 276 (763)
.++++|++++|.++.+|..+. ++|++|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 358999999999999998776 899999999999999987 6899999999994 6888887 778999999998
Q ss_pred ccccccc
Q 039689 277 VGSLEEM 283 (763)
Q Consensus 277 ~~~l~~l 283 (763)
|. +..+
T Consensus 111 N~-l~~l 116 (622)
T 3g06_A 111 NP-LTHL 116 (622)
T ss_dssp CC-CCCC
T ss_pred Cc-CCCC
Confidence 87 4433
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=6.2e-20 Score=190.23 Aligned_cols=197 Identities=20% Similarity=0.296 Sum_probs=143.6
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccC---
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGN--- 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~--- 265 (763)
++..+..+++|++|++++|.++.+|..|+.+++|++|+|++|.++.+|..++++++|++|++++|+.+..+|..++.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 46667779999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ------cccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccH
Q 039689 266 ------LTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTE 339 (763)
Q Consensus 266 ------L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 339 (763)
+++|++|++++|. +..+|. .+..+++|+.|++++|.
T Consensus 176 ~~~~~~l~~L~~L~L~~n~-l~~lp~----------------------------~l~~l~~L~~L~L~~N~--------- 217 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTG-IRSLPA----------------------------SIANLQNLKSLKIRNSP--------- 217 (328)
T ss_dssp CCCEEESTTCCEEEEEEEC-CCCCCG----------------------------GGGGCTTCCEEEEESSC---------
T ss_pred hhhhccCCCCCEEECcCCC-cCcchH----------------------------hhcCCCCCCEEEccCCC---------
Confidence 9999999999987 544432 23445566666665542
Q ss_pred HHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCcccc
Q 039689 340 TQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFY 418 (763)
Q Consensus 340 ~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~ 418 (763)
...+|..+.. +++|+.|++++|...+.+| .++.+++|+.|++++|.....++..+.
T Consensus 218 ---------------------l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 218 ---------------------LSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp ---------------------CCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred ---------------------CCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 2234444443 5667777777766666665 466677777777777666555544432
Q ss_pred CCCcCCCCCCcceeeccccchhhhcCCCCcCCcccE
Q 039689 419 GSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEK 454 (763)
Q Consensus 419 ~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~ 454 (763)
.+++|++|++.+ +...+.+|..+.+|..
T Consensus 275 ------~l~~L~~L~L~~--n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 275 ------RLTQLEKLDLRG--CVNLSRLPSLIAQLPA 302 (328)
T ss_dssp ------GCTTCCEEECTT--CTTCCCCCGGGGGSCT
T ss_pred ------cCCCCCEEeCCC--CCchhhccHHHhhccC
Confidence 266777777766 3444566654443333
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=4e-20 Score=209.48 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=59.2
Q ss_pred CCCCcccEEEecCCCC----CccCcccC------------CCCcccEEecCCCCchh-cchhhhhc--ccccEEeecccc
Q 039689 194 LNLPRLRVFSLRGYNI----FELPKAIE------------NLKHLRFLDLSTTKIEI-LRESINTL--YNLHTLLLEDCR 254 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i----~~lp~~~~------------~l~~L~~L~L~~~~i~~-lp~~~~~L--~~L~~L~L~~~~ 254 (763)
.++++|+.|+++++.. ..+|..++ .+++|++|+|++|.++. .+..++.+ .+|++|++++|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 5677899999988652 12333333 68899999999998774 35666664 459999999876
Q ss_pred ccc--cccccccCcccccccccCCcc
Q 039689 255 RLK--KLCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 255 ~l~--~lp~~i~~L~~L~~L~l~~~~ 278 (763)
.+. .++..+.++++|++|++++|.
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred CcCHHHHHHHHhhCCCCCEEECcccc
Confidence 432 233334578899999999886
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.3e-19 Score=186.67 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=74.2
Q ss_pred CcccEEEecCCCCC---ccCcccCCCCcccEEecCC-CCch-hcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 197 PRLRVFSLRGYNIF---ELPKAIENLKHLRFLDLST-TKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
.+++.|++++|.+. .+|..|+.+++|++|++++ |.+. .+|..|+++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68999999999988 4799999999999999995 8887 77999999999999999996555588999999999999
Q ss_pred cccCCcc
Q 039689 272 LNNSNVG 278 (763)
Q Consensus 272 L~l~~~~ 278 (763)
|++++|.
T Consensus 130 L~Ls~N~ 136 (313)
T 1ogq_A 130 LDFSYNA 136 (313)
T ss_dssp EECCSSE
T ss_pred EeCCCCc
Confidence 9999987
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=180.80 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=50.8
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 274 (763)
+...+.+.+++.++.+|..+. ++|++|++++|.++.+|. .|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEEC
Confidence 344456666677777766554 467777777777776654 5677777777777764 44444 344677777777777
Q ss_pred CCcc
Q 039689 275 SNVG 278 (763)
Q Consensus 275 ~~~~ 278 (763)
++|.
T Consensus 108 s~n~ 111 (353)
T 2z80_A 108 SYNY 111 (353)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7665
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3e-18 Score=178.48 Aligned_cols=270 Identities=14% Similarity=0.124 Sum_probs=160.3
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 274 (763)
++|++|++++|.++.+ |..|..+++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEEC
Confidence 6899999999999988 46899999999999999999987 78899999999999999 57889998776 89999999
Q ss_pred CCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc
Q 039689 275 SNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL 352 (763)
Q Consensus 275 ~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L 352 (763)
++|. +..++. +..+++|+ .+.+.+..-.. .......+..+ +|+.|+++
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~~l-~L~~L~l~------------------------- 180 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMN-CIEMGGNPLEN--SGFEPGAFDGL-KLNYLRIS------------------------- 180 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCC-EEECCSCCCBG--GGSCTTSSCSC-CCSCCBCC-------------------------
T ss_pred CCCc-cCccCHhHhCCCccCC-EEECCCCcccc--CCCCcccccCC-ccCEEECc-------------------------
Confidence 9997 665553 44555555 44443311100 00111222222 44444443
Q ss_pred eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
++....+|..+ +++|+.|++++|......+ .+..+++|+.|++++|.........+ ..+++|++
T Consensus 181 -----~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~ 245 (332)
T 2ft3_A 181 -----EAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL------SFLPTLRE 245 (332)
T ss_dssp -----SSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG------GGCTTCCE
T ss_pred -----CCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh------hCCCCCCE
Confidence 33344455443 3577777777775443332 56777777777777754332221111 12444555
Q ss_pred eeccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhc
Q 039689 432 LFFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFE 509 (763)
Q Consensus 432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 509 (763)
|++. +|. .++..+..+++|++|++++|.......- .+... ...
T Consensus 246 L~L~-----------------------~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~-----------~~~ 290 (332)
T 2ft3_A 246 LHLD-----------------------NNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN-DFCPV-----------GFG 290 (332)
T ss_dssp EECC-----------------------SSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT-SSSCS-----------SCC
T ss_pred EECC-----------------------CCcCeecChhhhcCccCCEEECCCCCCCccChh-Hcccc-----------ccc
Confidence 5544 442 2233455677788888887765442210 00000 000
Q ss_pred CCCCCCceEEEeccCCccccccccCcCCccccccCceeeccC
Q 039689 510 QGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRC 551 (763)
Q Consensus 510 ~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~ 551 (763)
...+.|+.|++.+|+....- ... .....+++|+.++++++
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~-~~~-~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWE-VQP-ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGG-SCG-GGGTTBCCSTTEEC---
T ss_pred cccccccceEeecCcccccc-cCc-ccccccchhhhhhcccc
Confidence 22566777777777643210 000 11134566777777654
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=3.7e-18 Score=177.66 Aligned_cols=268 Identities=15% Similarity=0.125 Sum_probs=156.3
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 274 (763)
+.+++|++++|.++.++ ..|+.+++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEEC
Confidence 68999999999999986 4799999999999999999988 88999999999999999 57889998765 79999999
Q ss_pred CCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc
Q 039689 275 SNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL 352 (763)
Q Consensus 275 ~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L 352 (763)
++|. +..++. +.++++|+ .+.+.+..-.. .......+.++++|+.|+++
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~------------------------- 179 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMI-VVELGTNPLKS--SGIENGAFQGMKKLSYIRIA------------------------- 179 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCC-EEECCSSCCCG--GGBCTTGGGGCTTCCEEECC-------------------------
T ss_pred CCCc-ccccCHhHhcCCcccc-EEECCCCcCCc--cCcChhhccCCCCcCEEECC-------------------------
Confidence 9997 554443 34444444 44433211000 00111223333334433333
Q ss_pred eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
++....+|..+ +++|+.|++++|......+ .++.+++|+.|+++++.........+
T Consensus 180 -----~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------- 236 (330)
T 1xku_A 180 -----DTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-------------- 236 (330)
T ss_dssp -----SSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------------
T ss_pred -----CCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--------------
Confidence 33333444433 3566666666665333222 45566666666666654332222111
Q ss_pred eeccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccC--CCccccceeccccchhhhh
Q 039689 432 LFFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSS--PTDLSSLKLVHSRDMAKEV 507 (763)
Q Consensus 432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~~L~~L~~~~~~~~~~~~ 507 (763)
..+++|++|++++|. .++..+..+++|++|++++|.....+. +... .
T Consensus 237 ---------------~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~--------------~ 287 (330)
T 1xku_A 237 ---------------ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP--------------G 287 (330)
T ss_dssp ---------------GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS--------------S
T ss_pred ---------------cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc--------------c
Confidence 123445555555443 233345667788888888876544321 1000 0
Q ss_pred hcCCCCCCceEEEeccCCccccccccCcCCccccccCceeecc
Q 039689 508 FEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISR 550 (763)
Q Consensus 508 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~ 550 (763)
.....+.|+.+++++|+....- .....+ ..+.+++.+++++
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~-i~~~~f-~~~~~l~~l~L~~ 328 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWE-IQPSTF-RCVYVRAAVQLGN 328 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGG-SCGGGG-TTCCCGGGEEC--
T ss_pred cccccccccceEeecCcccccc-cCcccc-ccccceeEEEecc
Confidence 0123466777777777653210 000011 3345666776655
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=4.5e-19 Score=182.66 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=90.0
Q ss_pred hhhhccCCCCcccEEEecC-CCCC-ccCcccCCCCcccEEecCCCCch-hcchhhhhcccccEEeecccccccccccccc
Q 039689 188 NVLQRLLNLPRLRVFSLRG-YNIF-ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMG 264 (763)
Q Consensus 188 ~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~ 264 (763)
.++..+.++++|++|++++ |.+. .+|..|+.+++|++|+|++|.++ .+|..|+++++|++|++++|.....+|..++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 3567788999999999995 8766 57999999999999999999998 7899999999999999999654458899999
Q ss_pred CcccccccccCCccccc-cccc-CCCcc-CCCceeeec
Q 039689 265 NLTKLHHLNNSNVGSLE-EMLM-LKSLV-HLQGTLEIS 299 (763)
Q Consensus 265 ~L~~L~~L~l~~~~~l~-~l~~-l~~L~-~L~~~L~~~ 299 (763)
++++|++|++++|. +. .+|. +..+. .|+ .+.+.
T Consensus 147 ~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~-~L~L~ 182 (313)
T 1ogq_A 147 SLPNLVGITFDGNR-ISGAIPDSYGSFSKLFT-SMTIS 182 (313)
T ss_dssp GCTTCCEEECCSSC-CEEECCGGGGCCCTTCC-EEECC
T ss_pred cCCCCCeEECcCCc-ccCcCCHHHhhhhhcCc-EEECc
Confidence 99999999999998 44 4442 44443 444 44443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=9.4e-17 Score=179.07 Aligned_cols=252 Identities=29% Similarity=0.320 Sum_probs=147.5
Q ss_pred eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689 353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL 432 (763)
Q Consensus 353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L 432 (763)
.|++.++....+|..+ +++|+.|++++|. +..+|. .+++|++|++++|...
T Consensus 44 ~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~---------------------- 94 (622)
T 3g06_A 44 VLNVGESGLTTLPDCL----PAHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLT---------------------- 94 (622)
T ss_dssp EEECCSSCCSCCCSCC----CTTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCCS----------------------
T ss_pred EEEecCCCcCccChhh----CCCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcCC----------------------
Confidence 4444455555666554 3577777777774 334554 4566666666664321
Q ss_pred eccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCC
Q 039689 433 FFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGL 512 (763)
Q Consensus 433 ~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 512 (763)
.+|..+++|++|++++|.... ....+++|++|++++|....++ ..+
T Consensus 95 -----------~lp~~l~~L~~L~Ls~N~l~~-l~~~l~~L~~L~L~~N~l~~lp----------------------~~l 140 (622)
T 3g06_A 95 -----------SLPVLPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLP----------------------VLP 140 (622)
T ss_dssp -----------CCCCCCTTCCEEEECSCCCCC-CCCCCTTCCEEECCSSCCSCCC----------------------CCC
T ss_pred -----------cCCCCCCCCCEEECcCCcCCC-CCCCCCCcCEEECCCCCCCcCC----------------------CCC
Confidence 122234445555554443111 1114556666666666433211 124
Q ss_pred CCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecC
Q 039689 513 PKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSC 592 (763)
Q Consensus 513 ~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c 592 (763)
++|++|++++|... .+|..+++|+.|++++ +.++.+|.. +++|+.|++++|
T Consensus 141 ~~L~~L~Ls~N~l~--------~l~~~~~~L~~L~L~~----------------N~l~~l~~~-----~~~L~~L~Ls~N 191 (622)
T 3g06_A 141 PGLQELSVSDNQLA--------SLPALPSELCKLWAYN----------------NQLTSLPML-----PSGLQELSVSDN 191 (622)
T ss_dssp TTCCEEECCSSCCS--------CCCCCCTTCCEEECCS----------------SCCSCCCCC-----CTTCCEEECCSS
T ss_pred CCCCEEECcCCcCC--------CcCCccCCCCEEECCC----------------CCCCCCccc-----CCCCcEEECCCC
Confidence 66777777776432 3444445555555444 556666622 577777777665
Q ss_pred ccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCcc
Q 039689 593 NSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSL 672 (763)
Q Consensus 593 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L 672 (763)
. ++.+|. .+++|+.|++++| .++.+|. .+++|+.|++++| .++.+| .. +++|
T Consensus 192 ~-l~~l~~--~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N-~L~~lp--~~----------------l~~L 243 (622)
T 3g06_A 192 Q-LASLPT--LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN-RLTSLP--VL----------------PSEL 243 (622)
T ss_dssp C-CSCCCC--CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCC--CC----------------CTTC
T ss_pred C-CCCCCC--ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCC-ccCcCC--CC----------------CCcC
Confidence 4 455653 3467777887777 4555653 3467777888777 565554 11 2345
Q ss_pred ceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCC
Q 039689 673 RKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 727 (763)
Q Consensus 673 ~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~ 727 (763)
+.|++++ +.+..+|..+++|++|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 244 ~~L~Ls~--N~L~~lp~~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 244 KELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CEEECCS--SCCSCCCCCCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cEEECCC--CCCCcCCcccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence 5555554 35556666667888888888 4677888777888888888888875
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2.1e-17 Score=170.03 Aligned_cols=100 Identities=24% Similarity=0.277 Sum_probs=82.9
Q ss_pred CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhc---chhhhhcccccEEeeccccccccccccccCccccccc
Q 039689 197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL---RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL 272 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 272 (763)
++|++|++++|.++.+|. .|..+++|++|+|++|.++.+ |..+..+++|++|++++ +.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEE
Confidence 689999999999999975 479999999999999998865 78888999999999999 5788899889999999999
Q ss_pred ccCCccccccccc---CCCccCCCceeeec
Q 039689 273 NNSNVGSLEEMLM---LKSLVHLQGTLEIS 299 (763)
Q Consensus 273 ~l~~~~~l~~l~~---l~~L~~L~~~L~~~ 299 (763)
++++|. +..++. +..+++|+ .+.+.
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~-~L~l~ 134 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLI-YLDIS 134 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCC-EEECT
T ss_pred ECCCCc-ccccccchhhhhccCCC-EEECC
Confidence 999997 665543 44445554 44443
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.9e-18 Score=195.72 Aligned_cols=223 Identities=18% Similarity=0.119 Sum_probs=124.4
Q ss_pred CCCCcccEEEecCCCCCcc-CcccCC-C-CcccEEecCCCC-ch--hcchhhhhcccccEEeecccccccc----ccccc
Q 039689 194 LNLPRLRVFSLRGYNIFEL-PKAIEN-L-KHLRFLDLSTTK-IE--ILRESINTLYNLHTLLLEDCRRLKK----LCKDM 263 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~l-p~~~~~-l-~~L~~L~L~~~~-i~--~lp~~~~~L~~L~~L~L~~~~~l~~----lp~~i 263 (763)
..+++|++|+|++|.++.. +..+.. + .+|++|+|++|. ++ .++....++++|++|+|++|..... ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4789999999999987653 444554 3 459999999986 33 3455557899999999999753222 33345
Q ss_pred cCcccccccccCCccccc-----cccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCc
Q 039689 264 GNLTKLHHLNNSNVGSLE-----EMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPK 337 (763)
Q Consensus 264 ~~L~~L~~L~l~~~~~l~-----~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 337 (763)
..+++|++|++++|. +. .++. +.++++|+ .|.+.++.. .. ....+..+++|+.|++.......
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~----~~-l~~~~~~~~~L~~L~l~~~~~~~---- 257 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLV-SVKVGDFEI----LE-LVGFFKAAANLEEFCGGSLNEDI---- 257 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCC-EEECSSCBG----GG-GHHHHHHCTTCCEEEECBCCCCT----
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCc-EEeccCccH----HH-HHHHHhhhhHHHhhccccccccc----
Confidence 678899999999887 43 2221 23445555 555544211 11 22344555666666664211000
Q ss_pred cHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCc-
Q 039689 338 TETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGS- 415 (763)
Q Consensus 338 ~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~- 415 (763)
.....+..+.. +++|+.|.++++. ...++ .+..+++|++|++++|. +.....
T Consensus 258 ----------------------~~~~~~~~l~~--~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~ 311 (592)
T 3ogk_B 258 ----------------------GMPEKYMNLVF--PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LETEDHC 311 (592)
T ss_dssp ----------------------TCTTSSSCCCC--CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCHHHHH
T ss_pred ----------------------chHHHHHHhhc--cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCHHHHH
Confidence 00111222222 5677777777652 23344 45567788888888765 211100
Q ss_pred cccCCCcCCCCCCcceeeccccchhhh--cCCCCcCCcccEEEEec
Q 039689 416 EFYGSSCSVSFPSLETLFFVDICSKLQ--GTLPERLLLLEKLNIFR 459 (763)
Q Consensus 416 ~~~~~~~~~~f~~L~~L~l~~~~~~l~--~~~~~~~~~L~~L~l~~ 459 (763)
.. ...+++|++|++.+. .... ..+...+++|++|++.+
T Consensus 312 ~~-----~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 312 TL-----IQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp HH-----HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HH-----HHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeec
Confidence 00 023666777766531 1110 01112456677777764
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=9.2e-19 Score=198.37 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=62.1
Q ss_pred CCCCcccEEEecCCC-CCcc---Cc------------ccCCCCcccEEecCCCCchhc-chhhh-hcccccEEeeccccc
Q 039689 194 LNLPRLRVFSLRGYN-IFEL---PK------------AIENLKHLRFLDLSTTKIEIL-RESIN-TLYNLHTLLLEDCRR 255 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~-i~~l---p~------------~~~~l~~L~~L~L~~~~i~~l-p~~~~-~L~~L~~L~L~~~~~ 255 (763)
.++++|+.|+++++. +..+ |. .+..+++|++|+|++|.++.. +..+. .+++|++|++++|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 556788999999876 2222 21 124678899999999887743 55564 789999999998866
Q ss_pred ccc--ccccccCcccccccccCCcc
Q 039689 256 LKK--LCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 256 l~~--lp~~i~~L~~L~~L~l~~~~ 278 (763)
+.. ++..+.++++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 655 55545688999999999886
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=7.8e-20 Score=200.23 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=59.9
Q ss_pred CcccEEEecCCCCCccC--cccCCCCcccEEecCCCCch-----hcchhhhhcccccEEeecccccccc-ccccc-cCcc
Q 039689 197 PRLRVFSLRGYNIFELP--KAIENLKHLRFLDLSTTKIE-----ILRESINTLYNLHTLLLEDCRRLKK-LCKDM-GNLT 267 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i-~~L~ 267 (763)
+.|++|++++|.++..+ ..+..+++|++|+|++|.++ .+|..+..+++|++|++++|. +.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 57888999988887653 33778889999999998877 457778888999999998854 433 23332 2344
Q ss_pred ----cccccccCCcc
Q 039689 268 ----KLHHLNNSNVG 278 (763)
Q Consensus 268 ----~L~~L~l~~~~ 278 (763)
+|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC 96 (461)
T ss_dssp STTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCC
Confidence 68888888886
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1.1e-16 Score=174.25 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=48.5
Q ss_pred ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccCcccccccccCC
Q 039689 199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSN 276 (763)
Q Consensus 199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 276 (763)
.+.++.++..++.+|..+. ++|++|+|++|.++.+ |..|+++++|++|+|++| .+..++ ..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 3456666666666665543 5667777777776655 455667777777777763 444443 4466677777777766
Q ss_pred cc
Q 039689 277 VG 278 (763)
Q Consensus 277 ~~ 278 (763)
|.
T Consensus 133 n~ 134 (452)
T 3zyi_A 133 NW 134 (452)
T ss_dssp SC
T ss_pred Cc
Confidence 65
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=174.84 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=80.7
Q ss_pred CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
++|++|++++|.++.+|. .|..+++|++|++++|.++.+ |..|+++++|++|++++ +.+..+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEE
Confidence 589999999999999864 899999999999999999988 56799999999999999 578888876 89999999999
Q ss_pred cCCccccccccc---CCCccCCC
Q 039689 274 NSNVGSLEEMLM---LKSLVHLQ 293 (763)
Q Consensus 274 l~~~~~l~~l~~---l~~L~~L~ 293 (763)
+++|. +..++. +..+++|+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCC
T ss_pred CCCCC-CcccCchhhhccCCCCc
Confidence 99997 665554 34444444
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=173.07 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=44.1
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 277 (763)
+.++.++..++.+|..+. .++++|+|++|.++.++ ..|+++++|++|+|++| .+..++ ..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 455555556666665443 55666666666666553 45666666666666663 344443 34666666666666665
Q ss_pred c
Q 039689 278 G 278 (763)
Q Consensus 278 ~ 278 (763)
.
T Consensus 123 ~ 123 (440)
T 3zyj_A 123 R 123 (440)
T ss_dssp C
T ss_pred c
Confidence 4
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=5.6e-17 Score=176.53 Aligned_cols=217 Identities=24% Similarity=0.276 Sum_probs=140.0
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
+++++|+|++|.++.+ |..|..+++|++|+|++|.++.++ ..|+++++|++|+|++ +.+..+|.. ++.+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEE
Confidence 6899999999999988 688999999999999999999875 7899999999999999 567788766 89999999999
Q ss_pred cCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689 274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351 (763)
Q Consensus 274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 351 (763)
+++|. +..++. +.++++|+ .|.+.+..... ......+.+
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~-~L~l~~~~~l~---~i~~~~~~~---------------------------------- 194 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLM-RLDLGELKKLE---YISEGAFEG---------------------------------- 194 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCC-EEECCCCTTCC---EECTTTTTT----------------------------------
T ss_pred CCCCC-cceeCHhHHhcCCccc-EEeCCCCCCcc---ccChhhccC----------------------------------
Confidence 99998 666554 44555555 44443322211 111112223
Q ss_pred ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET 431 (763)
Q Consensus 352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 431 (763)
+++|+.|++++|. +..+|.+..+++|+.|++++|.........|. .+++|+.
T Consensus 195 ---------------------l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~ 246 (452)
T 3zyi_A 195 ---------------------LFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH------GLSSLKK 246 (452)
T ss_dssp ---------------------CTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGT------TCTTCCE
T ss_pred ---------------------CCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCccccc------CccCCCE
Confidence 4455555555553 23344555555555555555444333332222 2455555
Q ss_pred eeccccchhhhcCCC---CcCCcccEEEEecCcch---hhcCCCCCcccEEEEecCCc
Q 039689 432 LFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQL---LVTLQCLPALRELEIDGCKG 483 (763)
Q Consensus 432 L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~ 483 (763)
|++.+ +.+.+..+ ..+++|+.|++++|.-. ...+..+++|++|++++|+.
T Consensus 247 L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 247 LWVMN--SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EEeCC--CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 55554 22222212 24556666666666421 12466788999999998863
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=174.07 Aligned_cols=101 Identities=28% Similarity=0.397 Sum_probs=84.4
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 273 (763)
+++++|+|++|.++.++ ..|..+++|++|+|++|.++.++ ..|.++++|++|+|++ +.+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceee
Confidence 68999999999999885 88999999999999999999885 7899999999999999 57888876 499999999999
Q ss_pred cCCccccccccc--CCCccCCCceeeecC
Q 039689 274 NSNVGSLEEMLM--LKSLVHLQGTLEISR 300 (763)
Q Consensus 274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~ 300 (763)
+++|. +..++. +..+++|+ .|.+.+
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~-~L~l~~ 169 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLR-RLDLGE 169 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCC-EEECCC
T ss_pred CCCCc-ccccCHHHhhhCcccC-EeCCCC
Confidence 99998 666554 44555555 444443
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=4.9e-19 Score=193.86 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=71.4
Q ss_pred cCCCCcccEEEecCCCCC-----ccCcccCCCCcccEEecCCCCchhc-chhh-hhcc----cccEEeeccccccc----
Q 039689 193 LLNLPRLRVFSLRGYNIF-----ELPKAIENLKHLRFLDLSTTKIEIL-RESI-NTLY----NLHTLLLEDCRRLK---- 257 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~-~~L~----~L~~L~L~~~~~l~---- 257 (763)
+..+++|++|++++|.++ .++..+..+++|++|+|++|.++.. +..+ ..+. +|++|++++|. +.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHH
Confidence 467789999999999987 4577788899999999999998853 4444 4566 79999999964 44
Q ss_pred -cccccccCcccccccccCCccccc
Q 039689 258 -KLCKDMGNLTKLHHLNNSNVGSLE 281 (763)
Q Consensus 258 -~lp~~i~~L~~L~~L~l~~~~~l~ 281 (763)
.+|..+..+++|++|++++|. +.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~ 126 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LG 126 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CH
T ss_pred HHHHHHHccCCceeEEECCCCc-Cc
Confidence 568889999999999999997 54
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=6.3e-18 Score=174.59 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=53.6
Q ss_pred CCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCC-CCCchhhhcCCCCCcceEeeccCCCc
Q 039689 567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL-ESLPEAWMQNSSTSLESLAIDSCDSL 644 (763)
Q Consensus 567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~l~~c~~l 644 (763)
+.++.+|..+. .+++|++|++++|. ++.+|. +..+++|+.|++++|+.. ..++..+ ..+++|+.+++.++..+
T Consensus 201 N~l~~l~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~--~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 201 NKLAFMGPEFQ--SAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp SCCCEECGGGG--GGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH--HTCHHHHHHHHHHHHHH
T ss_pred CcCCcchhhhc--ccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHH--hccccceEEECCCchhc
Confidence 45556665532 27888999998764 556665 567789999999998665 3455555 67888999988877655
Q ss_pred ccc
Q 039689 645 TYI 647 (763)
Q Consensus 645 ~~l 647 (763)
+..
T Consensus 276 ~~~ 278 (317)
T 3o53_A 276 TGQ 278 (317)
T ss_dssp HSS
T ss_pred cCC
Confidence 543
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1e-16 Score=162.96 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=55.0
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 277 (763)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..|+.+++|++|++++| .+..+ |..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777777644 467888888888887775 45777888888888874 45555 556777788888887777
Q ss_pred c
Q 039689 278 G 278 (763)
Q Consensus 278 ~ 278 (763)
.
T Consensus 91 ~ 91 (285)
T 1ozn_A 91 A 91 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=2.2e-16 Score=160.42 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-cccccCccccccc
Q 039689 196 LPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHL 272 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 272 (763)
.++|++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|+.+++|++|++++|..+..+ |..++.+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999999986 6799999999999999999988 788999999999999997557777 6679999999999
Q ss_pred ccCCcc
Q 039689 273 NNSNVG 278 (763)
Q Consensus 273 ~l~~~~ 278 (763)
++++|.
T Consensus 111 ~l~~n~ 116 (285)
T 1ozn_A 111 HLDRCG 116 (285)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 999987
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.2e-16 Score=162.37 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=67.8
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccc---cccccCcccccccccC
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKL---CKDMGNLTKLHHLNNS 275 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~ 275 (763)
+.++.+++.++.+|..+. ++|++|+|++|.++.+|.. |+++++|++|++++| .+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence 578889999999998664 7999999999999999876 699999999999995 55544 6677889999999999
Q ss_pred Ccccccccc
Q 039689 276 NVGSLEEML 284 (763)
Q Consensus 276 ~~~~l~~l~ 284 (763)
+|. +..++
T Consensus 87 ~n~-i~~l~ 94 (306)
T 2z66_A 87 FNG-VITMS 94 (306)
T ss_dssp SCS-EEEEE
T ss_pred CCc-cccCh
Confidence 997 54443
No 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.67 E-value=5.2e-17 Score=182.45 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=110.8
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCC-ChHHHHHHHhhhcccccCCccChHHHHH
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKD-DPKDWENVLKTEVWDLADDKCDIIPALR 79 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~-~~~~W~~~l~~~~~~~~~~~~~i~~~l~ 79 (763)
+||+||++. |+.. ..+++.+| |+|+||||+++|+.|+++. +.++|+.+ ....+..+|+
T Consensus 302 EA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLe 360 (1221)
T 1vt4_I 302 EVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIE 360 (1221)
T ss_dssp HHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHH
T ss_pred HHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHH
Confidence 489999998 4432 12344444 9999999999999999874 47788763 1357999999
Q ss_pred HHHhcCCHhH-HHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCccee
Q 039689 80 VSYHFLPPQL-KQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVM 158 (763)
Q Consensus 80 ~Sy~~L~~~~-k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m 158 (763)
+||+.|++++ |.||++||+||+++.|+.+.++..|+++| ++.+..++++|+++||++.. +...+++|
T Consensus 361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYrM 428 (1221)
T 1vt4_I 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTISI 428 (1221)
T ss_dssp HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEBC
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEEe
Confidence 9999999998 99999999999999999999999999987 13478899999999999985 34567999
Q ss_pred chhHHHHH
Q 039689 159 HDLINDLT 166 (763)
Q Consensus 159 hdli~~~~ 166 (763)
||++++++
T Consensus 429 HDLllELr 436 (1221)
T 1vt4_I 429 PSIYLELK 436 (1221)
T ss_dssp CCHHHHHH
T ss_pred hHHHHHHh
Confidence 99999865
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.67 E-value=1e-16 Score=197.88 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=127.1
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC--------Ccc
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD--------DKC 72 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~--------~~~ 72 (763)
+||+||++.|+.. .+++.+++++|+++|+|+||||+++|+.|+.++ ..|+.+++++...... ...
T Consensus 290 ~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~ 362 (1249)
T 3sfz_A 290 KGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYE 362 (1249)
T ss_dssp HHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHH
T ss_pred HHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchH
Confidence 4899999998532 345567899999999999999999999999874 5798888876433211 123
Q ss_pred ChHHHHHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCC
Q 039689 73 DIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYD 152 (763)
Q Consensus 73 ~i~~~l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 152 (763)
.+..++++||+.|++++|.||+|||+||+++.|+++.++..|.++ ++.++.++++|+++||++...+.
T Consensus 363 ~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCC
Confidence 589999999999999999999999999999999999999999654 35678899999999999976422
Q ss_pred -CCcceechhHHHHHHHHhcCc
Q 039689 153 -ASRFVMHDLINDLTRWAAGET 173 (763)
Q Consensus 153 -~~~~~mhdli~~~~~~~~~~~ 173 (763)
..+++|||++|++++..+..+
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 335999999999999887654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3e-17 Score=169.03 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=57.4
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh--cchhhh-------hcccccEEeeccccccccccccc-
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI--LRESIN-------TLYNLHTLLLEDCRRLKKLCKDM- 263 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~~~-------~L~~L~~L~L~~~~~l~~lp~~i- 263 (763)
...++|+.|++++|.+ .+|..+... |++|+|++|.++. +|..+. ++++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4456677777777777 677666544 7788888877753 566555 67788888888754444677765
Q ss_pred -cCcccccccccCCcc
Q 039689 264 -GNLTKLHHLNNSNVG 278 (763)
Q Consensus 264 -~~L~~L~~L~l~~~~ 278 (763)
+.+++|++|++++|.
T Consensus 117 ~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 117 EATGPDLNILNLRNVS 132 (312)
T ss_dssp SCCSCCCSEEEEESCB
T ss_pred HhcCCCccEEEccCCC
Confidence 777788888877776
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.4e-16 Score=172.31 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=45.6
Q ss_pred CCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCC-CCCchhhhcCCCCCcceEeecc
Q 039689 567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL-ESLPEAWMQNSSTSLESLAIDS 640 (763)
Q Consensus 567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~l~~ 640 (763)
+.++.+|+.+. .+++|+.|++++|. +..+|. +..+++|+.|++++|+.. ..+|..+ ..++.|+.+++..
T Consensus 201 N~l~~~~~~~~--~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~~~ 271 (487)
T 3oja_A 201 NKLAFMGPEFQ--SAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQT 271 (487)
T ss_dssp SCCCEECGGGG--GGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHHHH
T ss_pred CCCCCCCHhHc--CCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHH--HhCCCCcEEeccc
Confidence 44555655532 26788888887755 455665 566788888888888655 3455544 6677777777753
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=2.9e-17 Score=186.05 Aligned_cols=78 Identities=9% Similarity=0.052 Sum_probs=49.8
Q ss_pred EEEecCCCCCccCcccCCCCcccEEecCCCC-chhc---------------chhhhhcccccEEeecccccccccccccc
Q 039689 201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTK-IEIL---------------RESINTLYNLHTLLLEDCRRLKKLCKDMG 264 (763)
Q Consensus 201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-i~~l---------------p~~~~~L~~L~~L~L~~~~~l~~lp~~i~ 264 (763)
.+++.++.....+..+.++++|++|+++++. +..+ +.....+++|++|++++|......+..+.
T Consensus 47 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~ 126 (594)
T 2p1m_B 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126 (594)
T ss_dssp EEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred EEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH
Confidence 4455444322223456678899999999874 2211 12235778899999998753334444454
Q ss_pred -CcccccccccCCcc
Q 039689 265 -NLTKLHHLNNSNVG 278 (763)
Q Consensus 265 -~L~~L~~L~l~~~~ 278 (763)
.+++|++|++++|.
T Consensus 127 ~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 127 KSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEESCE
T ss_pred HhCCCCcEEeCCCcC
Confidence 67888888888885
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.8e-16 Score=153.42 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=81.5
Q ss_pred CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCC-chhcch-hhhhcccccEEeeccccccccccc-cccCccccccc
Q 039689 197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTK-IEILRE-SINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHL 272 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 272 (763)
+.|++|++++|.++.+|. .|..+++|++|++++|. ++.+|. .|+++++|++|++++|+.+..+|. .++++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999999864 89999999999999997 998875 789999999999998678888875 58999999999
Q ss_pred ccCCcccccccccCCCccCCC
Q 039689 273 NNSNVGSLEEMLMLKSLVHLQ 293 (763)
Q Consensus 273 ~l~~~~~l~~l~~l~~L~~L~ 293 (763)
++++|. +..+|.+..+..|+
T Consensus 111 ~l~~n~-l~~lp~~~~l~~L~ 130 (239)
T 2xwt_C 111 GIFNTG-LKMFPDLTKVYSTD 130 (239)
T ss_dssp EEEEEC-CCSCCCCTTCCBCC
T ss_pred eCCCCC-Cccccccccccccc
Confidence 999998 76666555544443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.9e-15 Score=155.53 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=131.3
Q ss_pred CCCcccEEEecCCCCC-ccCccc--CCCCcccEEecCCCCchhcchhhhhc-----ccccEEeecccccccccc-ccccC
Q 039689 195 NLPRLRVFSLRGYNIF-ELPKAI--ENLKHLRFLDLSTTKIEILRESINTL-----YNLHTLLLEDCRRLKKLC-KDMGN 265 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~-~lp~~~--~~l~~L~~L~L~~~~i~~lp~~~~~L-----~~L~~L~L~~~~~l~~lp-~~i~~ 265 (763)
.+++|++|++++|.++ .+|..+ ..+++|++|+|++|.++.+|..++.+ ++|++|++++| .+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 6899999999999998 468776 89999999999999999889999988 99999999995 566665 67999
Q ss_pred cccccccccCCcccccc---cccC--CCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHH
Q 039689 266 LTKLHHLNNSNVGSLEE---MLML--KSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTET 340 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~---l~~l--~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 340 (763)
+++|++|++++|..... .+.+ ..+++|+ .|.+.+.. +..........+..+++|+.|++++|......+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG---- 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-EEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-EEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc----
Confidence 99999999999973322 1223 6777777 77776532 222223333445567788888887775433211
Q ss_pred HHhhcCCCCCCc-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceeccc
Q 039689 341 QVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGM 407 (763)
Q Consensus 341 ~~l~~l~~l~~L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 407 (763)
...+..++.| .|++.++....+|.++. ++|+.|++++|.. ..+|.+..+++|++|+++++
T Consensus 246 --~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 --APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp --CSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTC
T ss_pred --hhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCC-CCChhHhhCCCCCEEeccCC
Confidence 1112223444 55555555555554442 4555555555532 22244445555555555543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2e-15 Score=154.83 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=124.6
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
..+++|++|++++|.+..+| .+..+++|++|+|++|.++.+|. ++.+++|++|++++| .+..+| .++.+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 34678888889888888876 57888889999999888888877 888889999999884 577775 588888899999
Q ss_pred cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689 274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE 353 (763)
Q Consensus 274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 353 (763)
+++|. +..++.+..+++|+ .|.+.+.. +.... .+..+++|+.|+++.|..
T Consensus 114 l~~n~-l~~~~~l~~l~~L~-~L~l~~n~----l~~~~--~l~~l~~L~~L~l~~n~l---------------------- 163 (308)
T 1h6u_A 114 LTSTQ-ITDVTPLAGLSNLQ-VLYLDLNQ----ITNIS--PLAGLTNLQYLSIGNAQV---------------------- 163 (308)
T ss_dssp CTTSC-CCCCGGGTTCTTCC-EEECCSSC----CCCCG--GGGGCTTCCEEECCSSCC----------------------
T ss_pred CCCCC-CCCchhhcCCCCCC-EEECCCCc----cCcCc--cccCCCCccEEEccCCcC----------------------
Confidence 98887 77777677777777 66665531 11111 155666777777765532
Q ss_pred EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceee
Q 039689 354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLF 433 (763)
Q Consensus 354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 433 (763)
..++. +.. +++|+.|++++|. +..++.+..+++|+.|++++|....... ...+++|+.|+
T Consensus 164 --------~~~~~-l~~--l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~ 223 (308)
T 1h6u_A 164 --------SDLTP-LAN--LSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVT 223 (308)
T ss_dssp --------CCCGG-GTT--CTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEE
T ss_pred --------CCChh-hcC--CCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCccCcccc--------ccCCCCCCEEE
Confidence 22222 222 5566666666664 2334445566666666666654322211 12356666666
Q ss_pred ccc
Q 039689 434 FVD 436 (763)
Q Consensus 434 l~~ 436 (763)
+.+
T Consensus 224 l~~ 226 (308)
T 1h6u_A 224 LTN 226 (308)
T ss_dssp EEE
T ss_pred ccC
Confidence 665
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=4.1e-15 Score=150.28 Aligned_cols=198 Identities=18% Similarity=0.150 Sum_probs=148.0
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccc-ccccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 273 (763)
+.|++|++++|.++.++ ..|..+++|++|++++|.++.++. .|+++++|++|++++| .+..++ ..++++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 47999999999999886 489999999999999999998864 7899999999999995 566555 5699999999999
Q ss_pred cCCccccccccc--CCCccCCCceeeecCcccccCcccc-hhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDA-SEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
+++|. +..++. +..+++|+ .+.+.+.. +... .+..+..+++|+.|++++|....... ..+..+..++
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~ 176 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLK-ELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMP 176 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCC-EEECCSSC----CCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCT
T ss_pred CCCCC-ccccCchhcccCCCCC-EEECcCCc----cceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhcc
Confidence 99997 766655 77888888 78776532 2221 24567888999999998886543321 2334444555
Q ss_pred Cc--eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccC
Q 039689 351 KL--ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMG 408 (763)
Q Consensus 351 ~L--~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~ 408 (763)
.+ .+++.++....+|..... ..+|+.|++++|... .++ .++.+++|+.|++++++
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred ccceeeecCCCcccccCccccC--CCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence 55 567777777777665544 458899999988643 444 36778888888888764
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=6.4e-15 Score=148.28 Aligned_cols=203 Identities=18% Similarity=0.188 Sum_probs=121.6
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL 272 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 272 (763)
..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .++.+++|++|++++| .+..+|.. ++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 34567777777777776654 3667777777777777777654 6777777777777774 55555544 5777777777
Q ss_pred ccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 273 NNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 273 ~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
++++|. +..++. +..+++|+ .|.+.+. .+.......+..+++|+.|++++|
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~n--------------------- 167 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLT-YLNLAHN----QLQSLPKGVFDKLTNLTELDLSYN--------------------- 167 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCC-EEECCSS----CCCCCCTTTTTTCTTCCEEECCSS---------------------
T ss_pred ECCCCc-CCccCHHHhccCCCCC-EEECCCC----ccCccCHHHhccCccCCEEECCCC---------------------
Confidence 777776 554443 34444444 4444332 111122223444555555555444
Q ss_pred CceEEEeeeCCCCCCCc-cCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCC
Q 039689 351 KLELTITGYGGTKFPIW-LGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS 428 (763)
Q Consensus 351 ~L~L~~~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~ 428 (763)
....+|.. +.. +++|+.|++++|......+ .++.+++|+.|++++|+.. ..+++
T Consensus 168 ---------~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~ 223 (272)
T 3rfs_A 168 ---------QLQSLPEGVFDK--LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPG 223 (272)
T ss_dssp ---------CCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------CCTTT
T ss_pred ---------CcCccCHHHhcC--CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------ccCcH
Confidence 33333332 233 6788888888886544333 3677888888888876422 12667
Q ss_pred cceeeccccchhhhcCCCCcCCcc
Q 039689 429 LETLFFVDICSKLQGTLPERLLLL 452 (763)
Q Consensus 429 L~~L~l~~~~~~l~~~~~~~~~~L 452 (763)
|+.|.+.. +.+.+.+|..+..+
T Consensus 224 l~~l~~~~--n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 224 IRYLSEWI--NKHSGVVRNSAGSV 245 (272)
T ss_dssp THHHHHHH--HHTGGGBBCTTSCB
T ss_pred HHHHHHHH--HhCCCcccCccccc
Confidence 77777765 55666666544433
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=1.5e-14 Score=142.68 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=133.4
Q ss_pred CCCceEEEeccCCccccccccCcCC-ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEec
Q 039689 513 PKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS 591 (763)
Q Consensus 513 ~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 591 (763)
++|++|++++|.... +| ..+..+.. |++|++++|..++.++...+ ..+++|++|++++
T Consensus 31 ~~l~~L~l~~n~l~~--------i~~~~~~~l~~------------L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT--------IPSHAFSNLPN------------ISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRN 89 (239)
T ss_dssp TTCCEEEEESCCCSE--------ECTTTTTTCTT------------CCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEE
T ss_pred CcccEEEEeCCcceE--------ECHHHccCCCC------------CcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCC
Confidence 468888888876432 22 12222222 55555555444777776533 2478888888887
Q ss_pred CccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcc---eEeeccCCCccccccccCCCCCcEEEEecCCC
Q 039689 592 CNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLE---SLAIDSCDSLTYIARIQLPPSLKRLIIFRCDN 666 (763)
Q Consensus 592 c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~---~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 666 (763)
|+.++.++. +..+++|++|++++|. ++.+|. + ..+++|+ .|++++|+.++.++...+.
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~~~~~------------- 152 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-L--TKVYSTDIFFILEITDNPYMTSIPVNAFQ------------- 152 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-C--TTCCBCCSEEEEEEESCTTCCEECTTTTT-------------
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-c--ccccccccccEEECCCCcchhhcCccccc-------------
Confidence 666777764 4567888888888884 555775 4 6677777 8888888777777655442
Q ss_pred CCCCccc-eEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCC-CCCC-CCcCceecccCCCCccccCCCcccc
Q 039689 667 LRFNSLR-KLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSI-GENL-TSLKFLDLDNCPKLKYFSKQGLPKS 740 (763)
Q Consensus 667 l~~~~L~-~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~-~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~ 740 (763)
.+++|+ .+++++ +.+..+|. ..++|++|++++|..++.+|.. +..+ ++|++|+++++ .++.+|.. ..++
T Consensus 153 -~l~~L~~~L~l~~--n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~ 227 (239)
T 2xwt_C 153 -GLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEH 227 (239)
T ss_dssp -TTBSSEEEEECCS--CCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTT
T ss_pred -chhcceeEEEcCC--CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-Hhcc
Confidence 345566 666655 44555554 2358999999996568888755 4778 99999999995 78888876 4579
Q ss_pred cceeeeccChhH
Q 039689 741 LLRLIIDECPLI 752 (763)
Q Consensus 741 L~~L~i~~C~~l 752 (763)
|+.|++++++.|
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 999999999864
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=3.5e-15 Score=153.94 Aligned_cols=240 Identities=14% Similarity=0.085 Sum_probs=157.2
Q ss_pred hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLT 267 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 267 (763)
...-+..+++|++|++++|.++.++ ..|..+++|++|+|++|.++.+++ ++.+++|++|++++| .+..+|. .+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~ 99 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP 99 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CC
Confidence 3334477889999999999998885 789999999999999999987765 899999999999994 6776663 48
Q ss_pred cccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689 268 KLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK 347 (763)
Q Consensus 268 ~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 347 (763)
+|++|++++|. +..++. ..+++|+ .+.+.+. .+.......+..+++|+.|++++|.....
T Consensus 100 ~L~~L~l~~n~-l~~~~~-~~~~~L~-~L~l~~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------- 159 (317)
T 3o53_A 100 SIETLHAANNN-ISRVSC-SRGQGKK-NIYLANN----KITMLRDLDEGCRSRVQYLDLKLNEIDTV------------- 159 (317)
T ss_dssp TCCEEECCSSC-CSEEEE-CCCSSCE-EEECCSS----CCCSGGGBCTGGGSSEEEEECTTSCCCEE-------------
T ss_pred CcCEEECCCCc-cCCcCc-cccCCCC-EEECCCC----CCCCccchhhhccCCCCEEECCCCCCCcc-------------
Confidence 99999999997 666553 2355565 5555442 22333344556677777777766532211
Q ss_pred CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689 348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP 427 (763)
Q Consensus 348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~ 427 (763)
.|..+.. .+++|+.|++++|. +..++....+++|+.|++++|.... ++..+ ..++
T Consensus 160 ----------------~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~------~~l~ 214 (317)
T 3o53_A 160 ----------------NFAELAA-SSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEF------QSAA 214 (317)
T ss_dssp ----------------EGGGGGG-GTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCE-ECGGG------GGGT
T ss_pred ----------------cHHHHhh-ccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCc-chhhh------cccC
Confidence 0111210 15677777777775 3344555557777777777764433 32223 2367
Q ss_pred CcceeeccccchhhhcCCC---CcCCcccEEEEecCcch----hhcCCCCCcccEEEEecCC
Q 039689 428 SLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQL----LVTLQCLPALRELEIDGCK 482 (763)
Q Consensus 428 ~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~l----~~~l~~l~~L~~L~l~~~~ 482 (763)
+|+.|++.+ +.+. .+| ..+++|+.|++.+|+.. +..+..+++|+.+++.++.
T Consensus 215 ~L~~L~L~~--N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 215 GVTWISLRN--NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCSEEECTT--SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cccEEECcC--Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 777777776 2333 223 35678888888877532 3345566677766666543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.7e-14 Score=143.54 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=42.9
Q ss_pred ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccccCC
Q 039689 199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSN 276 (763)
Q Consensus 199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 276 (763)
.++++++++.++.+|..+. .+|++|+|++|.++.+|. .|+++++|++|++++ +.+..+|.. +.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCC
Confidence 4555666666555555443 455666666666655543 455566666666655 344555544 35566666666665
Q ss_pred cc
Q 039689 277 VG 278 (763)
Q Consensus 277 ~~ 278 (763)
|.
T Consensus 95 n~ 96 (270)
T 2o6q_A 95 NK 96 (270)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 81
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.56 E-value=4.3e-15 Score=167.48 Aligned_cols=151 Identities=24% Similarity=0.346 Sum_probs=122.1
Q ss_pred ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhccccc--------CCcc
Q 039689 1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLA--------DDKC 72 (763)
Q Consensus 1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~--------~~~~ 72 (763)
+||+||.+.++.. .+...+.+.+|+++|+|+|+||+.+|+.|+.++ ..|+.+++.+..... ....
T Consensus 290 ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~ 362 (591)
T 1z6t_A 290 KGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYE 362 (591)
T ss_dssp HHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCH
T ss_pred HHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchH
Confidence 4899999998642 233456899999999999999999999999863 479988876543221 1224
Q ss_pred ChHHHHHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccccc-C
Q 039689 73 DIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQST-Y 151 (763)
Q Consensus 73 ~i~~~l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~ 151 (763)
.+..+++.||+.|+++.|.||+++|+||+|+.|+.+.+...|.+. .+.+..++++|+++||++... +
T Consensus 363 ~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~ 430 (591)
T 1z6t_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNG 430 (591)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEET
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCC
Confidence 688999999999999999999999999999999999999999643 234678999999999998653 2
Q ss_pred CCCcceechhHHHHHHHHh
Q 039689 152 DASRFVMHDLINDLTRWAA 170 (763)
Q Consensus 152 ~~~~~~mhdli~~~~~~~~ 170 (763)
...++.|||+++++++...
T Consensus 431 ~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 431 KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TEEEEECCHHHHHHHHHHT
T ss_pred CccEEEEcHHHHHHHHhhh
Confidence 3347999999999998763
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=3.1e-14 Score=144.40 Aligned_cols=195 Identities=22% Similarity=0.212 Sum_probs=125.4
Q ss_pred cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
+.++++++.++++++.++.+|..+. +++++|+|++|.++.+ |..|..+++|++|++++ +.+..+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCE
Confidence 4667888888998888888887664 6888899998888877 56788888999999988 567777764 78888899
Q ss_pred cccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 272 LNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 272 L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
|++++|. +..+|. +..+++|+ .|.+.+. .+.......+.++++|+.|++++|
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~-~L~l~~N----~l~~l~~~~~~~l~~L~~L~L~~N--------------------- 134 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALT-VLDVSFN----RLTSLPLGALRGLGELQELYLKGN--------------------- 134 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCC-EEECCSS----CCCCCCSSTTTTCTTCCEEECTTS---------------------
T ss_pred EECCCCc-CCcCchhhccCCCCC-EEECCCC----cCcccCHHHHcCCCCCCEEECCCC---------------------
Confidence 9988887 666654 44555555 5554431 122222234555556666655544
Q ss_pred CceEEEeeeCCCCCCCcc-CCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689 351 KLELTITGYGGTKFPIWL-GDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP 427 (763)
Q Consensus 351 ~L~L~~~~~~~~~~p~~~-~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~ 427 (763)
....+|... .. +++|+.|++++|... .+| .+..+++|+.|++++|... .++..+. ..+
T Consensus 135 ---------~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~------~~~ 195 (290)
T 1p9a_G 135 ---------ELKTLPPGLLTP--TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF------GSH 195 (290)
T ss_dssp ---------CCCCCCTTTTTT--CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT------TTC
T ss_pred ---------CCCccChhhccc--ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhc------ccc
Confidence 333444332 22 567777777777533 444 3566777777777765433 2322222 245
Q ss_pred Ccceeecccc
Q 039689 428 SLETLFFVDI 437 (763)
Q Consensus 428 ~L~~L~l~~~ 437 (763)
+|+.+++.++
T Consensus 196 ~L~~l~L~~N 205 (290)
T 1p9a_G 196 LLPFAFLHGN 205 (290)
T ss_dssp CCSEEECCSC
T ss_pred cCCeEEeCCC
Confidence 6777777663
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=3.1e-14 Score=143.77 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=66.5
Q ss_pred EEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689 201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 278 (763)
+.+..+..+..+|..+. ++|++|++++|.++.+|. .|+++++|++|++++| .+..+|. .++++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence 45666777888888765 689999999999998865 8899999999999995 6767665 69999999999999997
Q ss_pred cccccc
Q 039689 279 SLEEML 284 (763)
Q Consensus 279 ~l~~l~ 284 (763)
+..++
T Consensus 88 -l~~~~ 92 (276)
T 2z62_A 88 -IQSLA 92 (276)
T ss_dssp -CCEEC
T ss_pred -cCccC
Confidence 55443
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=5.7e-14 Score=141.17 Aligned_cols=86 Identities=28% Similarity=0.411 Sum_probs=74.9
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
+.++.|++++|.++.+| ..|..+++|++|+|++|.++.+|.. |.++++|++|++++ +.+..+|.. ++.+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS-SCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC-CcCCcCCHhHcccccCCCEEE
Confidence 57999999999999986 5899999999999999999999765 58899999999999 567777765 78999999999
Q ss_pred cCCcccccccc
Q 039689 274 NSNVGSLEEML 284 (763)
Q Consensus 274 l~~~~~l~~l~ 284 (763)
+++|. +..++
T Consensus 116 l~~n~-l~~~~ 125 (270)
T 2o6q_A 116 LDRNQ-LKSLP 125 (270)
T ss_dssp CCSSC-CCCCC
T ss_pred CCCCc-cCeeC
Confidence 99997 55444
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=1.7e-13 Score=138.97 Aligned_cols=193 Identities=20% Similarity=0.210 Sum_probs=118.9
Q ss_pred CCCCCCceEEEeccCCccccccccCcCCccc-cccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEE
Q 039689 510 QGLPKLERLEIQHVREQTYLWRSETRLPQDI-RSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLK 588 (763)
Q Consensus 510 ~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l-~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 588 (763)
+.++++++++++++... .+|..+ ++++.|++++ +.++.++...+. .+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~--------~ip~~~~~~l~~L~L~~----------------N~l~~~~~~~~~-~l~~L~~L~ 61 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT--------ALPPDLPKDTTILHLSE----------------NLLYTFSLATLM-PYTRLTQLN 61 (290)
T ss_dssp ECSTTCCEEECTTSCCS--------SCCSCCCTTCCEEECTT----------------SCCSEEEGGGGT-TCTTCCEEE
T ss_pred cccCCccEEECCCCCCC--------cCCCCCCCCCCEEEcCC----------------CcCCccCHHHhh-cCCCCCEEE
Confidence 55677888887776532 344322 3444444444 556655544233 378888888
Q ss_pred EecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCC
Q 039689 589 IRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLR 668 (763)
Q Consensus 589 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~ 668 (763)
+++|. ++.++....+++|++|++++| .++.+|..+ ..+++|+.|++++| .++.++...+. .
T Consensus 62 L~~n~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N-~l~~l~~~~~~--------------~ 122 (290)
T 1p9a_G 62 LDRAE-LTKLQVDGTLPVLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFN-RLTSLPLGALR--------------G 122 (290)
T ss_dssp CTTSC-CCEEECCSCCTTCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSS-CCCCCCSSTTT--------------T
T ss_pred CCCCc-cCcccCCCCCCcCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCC-cCcccCHHHHc--------------C
Confidence 87654 566665567778888888887 556777655 67788888888877 66666654432 2
Q ss_pred CCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCC-CCCCCcCceecccCCCCccccCCC-cccccc
Q 039689 669 FNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIG-ENLTSLKFLDLDNCPKLKYFSKQG-LPKSLL 742 (763)
Q Consensus 669 ~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~-~~l~~L~~L~l~~c~~L~~l~~~~-~~~~L~ 742 (763)
+++|+.|++++ +.+..+|. .+++|++|++++ +.++.+|... ..+++|++|++++| +++.+|... -.++|+
T Consensus 123 l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 123 LGELQELYLKG--NELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLP 198 (290)
T ss_dssp CTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCS
T ss_pred CCCCCEEECCC--CCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCC
Confidence 34555555554 34444443 345777777777 4666776554 56777777777774 566666532 224677
Q ss_pred eeeeccCh
Q 039689 743 RLIIDECP 750 (763)
Q Consensus 743 ~L~i~~C~ 750 (763)
.++++++|
T Consensus 199 ~l~L~~Np 206 (290)
T 1p9a_G 199 FAFLHGNP 206 (290)
T ss_dssp EEECCSCC
T ss_pred eEEeCCCC
Confidence 77776543
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=5.3e-14 Score=153.78 Aligned_cols=212 Identities=14% Similarity=0.049 Sum_probs=130.4
Q ss_pred CcCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEecc
Q 039689 447 ERLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHV 523 (763)
Q Consensus 447 ~~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 523 (763)
..+++|+.|++++|.. .+..+..+++|++|++++|....... +..+++|++|++++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--------------------LESLSTLRTLDLNNN 90 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--------------------CTTCTTCCEEECCSS
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--------------------cccCCCCCEEEecCC
Confidence 3455777777777652 22356778888888888886543221 256778888888887
Q ss_pred CCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CC
Q 039689 524 REQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FA 602 (763)
Q Consensus 524 ~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~ 602 (763)
... .+| ..++|+.|++++ +.++.++.. .+++|+.|++++|......|. +.
T Consensus 91 ~l~--------~l~-~~~~L~~L~L~~----------------N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~ 141 (487)
T 3oja_A 91 YVQ--------ELL-VGPSIETLHAAN----------------NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEG 141 (487)
T ss_dssp EEE--------EEE-ECTTCCEEECCS----------------SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGG
T ss_pred cCC--------CCC-CCCCcCEEECcC----------------CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhc
Confidence 533 222 114444444444 455555543 267788888877664333332 56
Q ss_pred CCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCC
Q 039689 603 LPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCP 682 (763)
Q Consensus 603 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~ 682 (763)
.+++|++|++++|...+..|..+. ..+++|+.|++++| .++.++....+++|+.|++++|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N------------------ 201 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN------------------ 201 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS------------------
T ss_pred CCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCC-ccccccccccCCCCCEEECCCC------------------
Confidence 677888888888854444454442 36788888888887 5666654444444554444333
Q ss_pred CccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCC
Q 039689 683 DLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPK 728 (763)
Q Consensus 683 ~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~ 728 (763)
.+..+|. .+++|+.|++++ +.++.+|..+..+++|+.|++++|+-
T Consensus 202 ~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 202 KLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence 2333332 345777777777 56667777777777777777777653
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=4.4e-13 Score=140.21 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=130.6
Q ss_pred eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcc
Q 039689 353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLE 430 (763)
Q Consensus 353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~ 430 (763)
.+...+...+.+|..+ ++++++|+|++|. ++.+| .|+++++|++|+|++|...+.++...+ ..++++.
T Consensus 13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-----~~L~~l~ 82 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL----PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-----SNLPKLH 82 (350)
T ss_dssp EEEEESTTCCSCCTTC----CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-----CSCTTCC
T ss_pred EEEecCCCCCccCcCc----CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-----hcchhhh
Confidence 3455566677788765 4789999999985 45565 588999999999999877665543211 1134444
Q ss_pred eeeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcC
Q 039689 431 TLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQ 510 (763)
Q Consensus 431 ~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 510 (763)
++.+.+ ++++.... +..+..+++|++|++++|.....+.... .
T Consensus 83 ~~l~~~-~N~l~~l~------------------~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------------~ 125 (350)
T 4ay9_X 83 EIRIEK-ANNLLYIN------------------PEAFQNLPNLQYLLISNTGIKHLPDVHK------------------I 125 (350)
T ss_dssp EEEEEE-ETTCCEEC------------------TTSBCCCTTCCEEEEEEECCSSCCCCTT------------------C
T ss_pred hhhccc-CCcccccC------------------chhhhhccccccccccccccccCCchhh------------------c
Confidence 433332 13332111 1245667778888887776544332111 1
Q ss_pred CCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEe
Q 039689 511 GLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIR 590 (763)
Q Consensus 511 ~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~ 590 (763)
...++..+++.++..+..+... .+......++. |++++ +.++.++...+. ..+|++|++.
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~--~f~~~~~~l~~---------------L~L~~-N~i~~i~~~~f~--~~~L~~l~l~ 185 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERN--SFVGLSFESVI---------------LWLNK-NGIQEIHNSAFN--GTQLDELNLS 185 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTT--SSTTSBSSCEE---------------EECCS-SCCCEECTTSST--TEEEEEEECT
T ss_pred ccchhhhhhhcccccccccccc--chhhcchhhhh---------------hcccc-ccccCCChhhcc--ccchhHHhhc
Confidence 2334555555555444321111 11111112333 33333 556666655433 4566677776
Q ss_pred cCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEE
Q 039689 591 SCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLII 661 (763)
Q Consensus 591 ~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 661 (763)
+++.++.+|. +..+++|++|++++| .++.+|. ..+.+|+.|.+.++..++.+|...-.++|+.+++
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred cCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 6666666664 455667777777766 5566665 3355666666666666666664333344444444
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=4.2e-13 Score=140.31 Aligned_cols=220 Identities=19% Similarity=0.163 Sum_probs=148.5
Q ss_pred CCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC-ccccccCceee
Q 039689 470 LPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQI 548 (763)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l 548 (763)
.+++++|++++|....++ ...+..+++|++|++++|..++ .+| ..+.+|..
T Consensus 29 ~~~l~~L~Ls~N~i~~i~------------------~~~f~~l~~L~~L~Ls~N~i~~-------~i~~~~f~~L~~--- 80 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQ------------------KGAFSGFGDLEKIEISQNDVLE-------VIEADVFSNLPK--- 80 (350)
T ss_dssp CTTCSEEEEESCCCSEEC------------------TTSSTTCTTCCEEEEECCTTCC-------EECTTSBCSCTT---
T ss_pred CCCCCEEEccCCcCCCcC------------------HHHHcCCCCCCEEECcCCCCCC-------ccChhHhhcchh---
Confidence 357999999998755432 1233678899999999998765 233 22333332
Q ss_pred ccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCC--CCCCCccEEEEccCCCCCCCchhhh
Q 039689 549 SRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDF--ALPSQLRTVTIKGCDALESLPEAWM 626 (763)
Q Consensus 549 ~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~ 626 (763)
+.++...+++.++.+++..+. .+++|++|++++|. +..+|.. ....++..+++.++..+..++...+
T Consensus 81 ---------l~~~l~~~~N~l~~l~~~~f~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 81 ---------LHEIRIEKANNLLYINPEAFQ-NLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp ---------CCEEEEEEETTCCEECTTSBC-CCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred ---------hhhhhcccCCcccccCchhhh-hccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccch
Confidence 333344444778888766433 48899999997765 5666653 3345677888888778888876554
Q ss_pred cCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccC
Q 039689 627 QNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDM 702 (763)
Q Consensus 627 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~ 702 (763)
......++.|++++| .++.++...+. ..+|+.+.+++ ++.+..+|. .+++|++|++++
T Consensus 150 ~~~~~~l~~L~L~~N-~i~~i~~~~f~---------------~~~L~~l~l~~-~n~l~~i~~~~f~~l~~L~~LdLs~- 211 (350)
T 4ay9_X 150 VGLSFESVILWLNKN-GIQEIHNSAFN---------------GTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISR- 211 (350)
T ss_dssp TTSBSSCEEEECCSS-CCCEECTTSST---------------TEEEEEEECTT-CTTCCCCCTTTTTTEECCSEEECTT-
T ss_pred hhcchhhhhhccccc-cccCCChhhcc---------------ccchhHHhhcc-CCcccCCCHHHhccCcccchhhcCC-
Confidence 344457888999987 77777766542 34566666665 666767665 456788888888
Q ss_pred CCCccccCCCCCCCCcCceecccCCCCccccCCCcccccceeeecc
Q 039689 703 PSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDE 748 (763)
Q Consensus 703 ~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~ 748 (763)
+.++.+|.. .+.+|+.|.+.+|++++.+|.....++|+.+++.+
T Consensus 212 N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 212 TRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp SCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 578888753 46777777777778888887654556788877753
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=4.7e-14 Score=143.20 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=79.4
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
..+++|++|++++|.+..++. +..+++|++|++++|.++.++. ++++++|++|++++ +.+..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh-hccCCCCCEEE
Confidence 456788999999999888864 8889999999999999998877 89999999999998 46777765 89999999999
Q ss_pred cCCcccccccccCCCccCCCceeeec
Q 039689 274 NSNVGSLEEMLMLKSLVHLQGTLEIS 299 (763)
Q Consensus 274 l~~~~~l~~l~~l~~L~~L~~~L~~~ 299 (763)
+++|. +..++.+..+++|+ .|.+.
T Consensus 119 L~~n~-i~~~~~l~~l~~L~-~L~l~ 142 (291)
T 1h6t_A 119 LEHNG-ISDINGLVHLPQLE-SLYLG 142 (291)
T ss_dssp CTTSC-CCCCGGGGGCTTCC-EEECC
T ss_pred CCCCc-CCCChhhcCCCCCC-EEEcc
Confidence 99987 66555555555555 44443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=143.58 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=91.2
Q ss_pred CCcccEEEecCCCCCcc-Cccc--CCCCcccEEecCCCCchhc-c----hhhhhcccccEEeecccccccccc-ccccCc
Q 039689 196 LPRLRVFSLRGYNIFEL-PKAI--ENLKHLRFLDLSTTKIEIL-R----ESINTLYNLHTLLLEDCRRLKKLC-KDMGNL 266 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~l-p~~~--~~l~~L~~L~L~~~~i~~l-p----~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L 266 (763)
+++|++|++++|.+... |..+ ..+++|++|+|++|.++.. | ..+..+++|++|++++| .+..+| ..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 45699999999998754 6777 8999999999999998852 2 34567999999999995 455554 669999
Q ss_pred ccccccccCCcccccc---ccc---CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689 267 TKLHHLNNSNVGSLEE---MLM---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD 332 (763)
Q Consensus 267 ~~L~~L~l~~~~~l~~---l~~---l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 332 (763)
++|++|++++|. +.. ++. +..+++|+ .|.+.+.. +..........+..+++|+.|++++|...
T Consensus 169 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~-~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 169 PALTSLDLSDNP-GLGERGLMAALCPHKFPAIQ-NLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp TTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCC-SCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCCCEEECCCCC-CccchhhhHHHhhhcCCCCC-EEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 999999999997 322 211 24555565 55554421 11112222223456677888888776443
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=9e-14 Score=142.45 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=138.3
Q ss_pred ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
.+..+++|++|++++|.+..++. +..+++|++|+|++|.++.+| .++.+++|++|++++| .+..+|. ++.+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 46789999999999999999977 999999999999999999886 7999999999999994 6788876 999999999
Q ss_pred cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689 272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351 (763)
Q Consensus 272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 351 (763)
|++++|. +..++.+..+++|+ .|.+.+.. +.... .+..+++|+.|++++|...
T Consensus 134 L~l~~n~-l~~~~~l~~l~~L~-~L~l~~n~----l~~~~--~l~~l~~L~~L~l~~n~l~------------------- 186 (308)
T 1h6u_A 134 LYLDLNQ-ITNISPLAGLTNLQ-YLSIGNAQ----VSDLT--PLANLSKLTTLKADDNKIS------------------- 186 (308)
T ss_dssp EECCSSC-CCCCGGGGGCTTCC-EEECCSSC----CCCCG--GGTTCTTCCEEECCSSCCC-------------------
T ss_pred EECCCCc-cCcCccccCCCCcc-EEEccCCc----CCCCh--hhcCCCCCCEEECCCCccC-------------------
Confidence 9999998 88888888889998 88887642 22222 2778889999988776432
Q ss_pred ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCC
Q 039689 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGR 409 (763)
Q Consensus 352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 409 (763)
.++. +.. +++|+.|++++|.. ..++++..+++|+.|+++++..
T Consensus 187 -----------~~~~-l~~--l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 -----------DISP-LAS--LPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----------CCGG-GGG--CTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEEE
T ss_pred -----------cChh-hcC--CCCCCEEEccCCcc-CccccccCCCCCCEEEccCCee
Confidence 2222 222 68888888888854 4555678888899999888653
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=4.3e-13 Score=133.15 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=45.9
Q ss_pred cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccccC
Q 039689 198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNS 275 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~ 275 (763)
..++++++++.++.+|..+. .+|++|+|++|.++.++ ..|+++++|++|++++| .+..++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 34556666666666665544 46666666666666553 34566666666666663 4444433 35666666666666
Q ss_pred Ccc
Q 039689 276 NVG 278 (763)
Q Consensus 276 ~~~ 278 (763)
+|.
T Consensus 92 ~n~ 94 (251)
T 3m19_A 92 NNQ 94 (251)
T ss_dssp TSC
T ss_pred CCc
Confidence 665
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.4e-13 Score=131.09 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=107.6
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44678999999999999888 7999999999999999887765 789999999999999644445788899999999999
Q ss_pred cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689 274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE 353 (763)
Q Consensus 274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 353 (763)
+++|. +.. .....+..+++|+.|++++|..
T Consensus 119 Ls~n~-i~~---------------------------~~~~~l~~l~~L~~L~L~~n~~---------------------- 148 (197)
T 4ezg_A 119 ISHSA-HDD---------------------------SILTKINTLPKVNSIDLSYNGA---------------------- 148 (197)
T ss_dssp CCSSB-CBG---------------------------GGHHHHTTCSSCCEEECCSCTB----------------------
T ss_pred ecCCc-cCc---------------------------HhHHHHhhCCCCCEEEccCCCC----------------------
Confidence 99987 332 1123344555666666655420
Q ss_pred EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccC
Q 039689 354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMG 408 (763)
Q Consensus 354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 408 (763)
...+| .+.. +++|+.|++++|. +..++.+..+++|++|+++++.
T Consensus 149 -------i~~~~-~l~~--l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 149 -------ITDIM-PLKT--LPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -------CCCCG-GGGG--CSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred -------ccccH-hhcC--CCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 11122 1222 5677777777774 3345566666777777776643
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=1.8e-13 Score=137.57 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=135.8
Q ss_pred hccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCccc
Q 039689 191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTK 268 (763)
Q Consensus 191 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~ 268 (763)
+.+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|.. ++.+++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCC
Confidence 34677999999999999998874 789999999999999999988654 699999999999995 66677665 799999
Q ss_pred ccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcC
Q 039689 269 LHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDML 346 (763)
Q Consensus 269 L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l 346 (763)
|++|++++|. +..++. +..+++|+ .+.+.+. .+.......+..+++|+.|+++.|..
T Consensus 135 L~~L~L~~n~-l~~~~~~~~~~l~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l--------------- 193 (272)
T 3rfs_A 135 LTYLNLAHNQ-LQSLPKGVFDKLTNLT-ELDLSYN----QLQSLPEGVFDKLTQLKDLRLYQNQL--------------- 193 (272)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCC-EEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCC---------------
T ss_pred CCEEECCCCc-cCccCHHHhccCccCC-EEECCCC----CcCccCHHHhcCCccCCEEECCCCcC---------------
Confidence 9999999997 877776 67888898 8888764 23334444567788888888876632
Q ss_pred CCCCCceEEEeeeCCCCCCC-ccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEe
Q 039689 347 KPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIV 413 (763)
Q Consensus 347 ~~l~~L~L~~~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~ 413 (763)
..+|. .+.. +++|+.|++++|+.. +.+++|+.+++..+.....+
T Consensus 194 ---------------~~~~~~~~~~--l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 194 ---------------KSVPDGVFDR--LTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp ---------------SCCCTTTTTT--CTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGB
T ss_pred ---------------CccCHHHHhC--CcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcc
Confidence 22332 2343 789999999998543 44667888887765544333
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=2.4e-13 Score=151.49 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=117.7
Q ss_pred CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 273 (763)
..+++|+.|++++|.+..+| .+..+++|++|+|++|.++.+|+ +..+++|+.|+|++| .+..+| .++.+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 45678888899999888886 58889999999999999888876 889999999999984 677766 588899999999
Q ss_pred cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689 274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE 353 (763)
Q Consensus 274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 353 (763)
+++|. +..++.+..+++|+ .|.+.+.. +... ..+..+++|+.|+++.|..
T Consensus 116 Ls~N~-l~~l~~l~~l~~L~-~L~Ls~N~----l~~l--~~l~~l~~L~~L~Ls~N~l---------------------- 165 (605)
T 1m9s_A 116 LEHNG-ISDINGLVHLPQLE-SLYLGNNK----ITDI--TVLSRLTKLDTLSLEDNQI---------------------- 165 (605)
T ss_dssp CTTSC-CCCCGGGGGCTTCS-EEECCSSC----CCCC--GGGGSCTTCSEEECCSSCC----------------------
T ss_pred ecCCC-CCCCccccCCCccC-EEECCCCc----cCCc--hhhcccCCCCEEECcCCcC----------------------
Confidence 99887 76676666667776 66665431 1111 3455666666666655532
Q ss_pred EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccC
Q 039689 354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMG 408 (763)
Q Consensus 354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 408 (763)
..+++ +.. +++|+.|+|++|. +..++.+..+++|+.|++++|.
T Consensus 166 --------~~~~~-l~~--l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 166 --------SDIVP-LAG--LTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp --------CCCGG-GTT--CTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred --------CCchh-hcc--CCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 22222 222 5667777776664 3345566666677777766654
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=133.49 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=124.1
Q ss_pred CCCCceEEEeccCCccccccccCcCC-----ccccccCceeeccCCchhhhcceeeeccCCCccc-ccc--hhhhcCCCC
Q 039689 512 LPKLERLEIQHVREQTYLWRSETRLP-----QDIRSLNRLQISRCPQLISLLRTVKIEDCNALES-LPE--AWMHNSNSS 583 (763)
Q Consensus 512 ~~~L~~L~l~~~~~l~~l~~~~~~~p-----~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~-l~~--~~~~~~l~~ 583 (763)
+++|++|++++|.... ..| ..+++|+.| ++++ +.++. .+. ......+++
T Consensus 90 ~~~L~~L~l~~n~l~~-------~~~~~~~~~~~~~L~~L---------------~Ls~-n~i~~~~~~~~~~~~~~~~~ 146 (310)
T 4glp_A 90 YSRLKELTLEDLKITG-------TMPPLPLEATGLALSSL---------------RLRN-VSWATGRSWLAELQQWLKPG 146 (310)
T ss_dssp HSCCCEEEEESCCCBS-------CCCCCSSSCCCBCCSSC---------------EEES-CCCSSTTSSHHHHHTTBCSC
T ss_pred cCceeEEEeeCCEecc-------chhhhhhhccCCCCCEE---------------Eeec-ccccchhhhhHHHHhhhccC
Confidence 4669999999987654 333 233444444 4444 33433 221 111124789
Q ss_pred cceEEEecCccccccCC-CCCCCCccEEEEccCCCCCC--CchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEE
Q 039689 584 LESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALES--LPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLI 660 (763)
Q Consensus 584 L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 660 (763)
|++|++++|......+. +..+++|++|++++|...+. ++.......+++|++|++++| .++.++..... -+.
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-l~~--- 221 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA-LAA--- 221 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH-HHH---
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH-HHh---
Confidence 99999988765333333 56788999999999865432 222221157889999999988 66655432100 000
Q ss_pred EecCCCCCCCccceEEecCCCCCcccc-CC------CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCcccc
Q 039689 661 IFRCDNLRFNSLRKLKISGGCPDLVSS-PR------FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS 733 (763)
Q Consensus 661 l~~c~~l~~~~L~~L~l~~~~~~l~~~-~~------~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~ 733 (763)
.+++|+.|++++ +.+... |. .+++|++|++++ +.++.+|..+. ++|++|++++| +++.+|
T Consensus 222 -------~l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~ 288 (310)
T 4glp_A 222 -------AGVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAP 288 (310)
T ss_dssp -------HTCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCC
T ss_pred -------cCCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCc
Confidence 124555555554 334333 22 236899999988 57888887654 79999999986 688876
Q ss_pred CCCcccccceeeeccCh
Q 039689 734 KQGLPKSLLRLIIDECP 750 (763)
Q Consensus 734 ~~~~~~~L~~L~i~~C~ 750 (763)
.....++|+.|++++++
T Consensus 289 ~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTSCCCCSCEECSSTT
T ss_pred hhhhCCCccEEECcCCC
Confidence 65555789999999886
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=5.6e-13 Score=132.95 Aligned_cols=86 Identities=26% Similarity=0.255 Sum_probs=57.2
Q ss_pred cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccc
Q 039689 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL 272 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 272 (763)
+..+++|++|++++|.++.+| .+..+++|++|+|++|.++.+|. ++.+++|++|++++ +.+..+|.. .. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTTC-CC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCcc-cc-CcccEE
Confidence 345667777777777777666 56677777777777777777765 77777777777777 456666543 33 677777
Q ss_pred ccCCcccccccc
Q 039689 273 NNSNVGSLEEML 284 (763)
Q Consensus 273 ~l~~~~~l~~l~ 284 (763)
++++|. +..++
T Consensus 112 ~L~~N~-l~~~~ 122 (263)
T 1xeu_A 112 FLDNNE-LRDTD 122 (263)
T ss_dssp ECCSSC-CSBSG
T ss_pred EccCCc-cCCCh
Confidence 777775 44433
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=2.9e-12 Score=123.11 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=38.1
Q ss_pred CCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCCc
Q 039689 373 FSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLL 451 (763)
Q Consensus 373 ~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~ 451 (763)
+++|+.|++++|......+ .+..+++|+.|++++|+.. ..+++|+.|.+.. +.+.+.+|..+..
T Consensus 123 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~L~~~~--n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWI--NKHSGVVRNSAGS 187 (208)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------------CCTTTTHHHHHHH--HHCTTTBBCTTSS
T ss_pred CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------------cCCCCHHHHHHHH--HhCCceeeccCcc
Confidence 5566666666664332222 3566777777777765321 1256777777765 5666677765544
Q ss_pred c
Q 039689 452 L 452 (763)
Q Consensus 452 L 452 (763)
+
T Consensus 188 l 188 (208)
T 2o6s_A 188 V 188 (208)
T ss_dssp B
T ss_pred c
Confidence 4
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=9.4e-14 Score=144.82 Aligned_cols=204 Identities=17% Similarity=0.154 Sum_probs=117.3
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh--cchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI--LRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 274 (763)
+.+++|++++|.+...+..+..+++|++|++++|.++. +|..+..+++|++|++++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56777888887777766556677888888888887763 6777778888888888876544456666777888888888
Q ss_pred CCcccccc--ccc-CCCccCCCceeeecCcccccCcccchhhhhcCcc-cccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689 275 SNVGSLEE--MLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKV-NLKALYLQWGVRDAVEPKTETQVIDMLKPHQ 350 (763)
Q Consensus 275 ~~~~~l~~--l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 350 (763)
++|..+.. ++. +..+++|+ .|.+.+...+.. ......+..++ +|+.|++++|..... .
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~-~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~----~----------- 211 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLD-ELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQ----K----------- 211 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCC-EEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSC----H-----------
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-EEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCC----H-----------
Confidence 87743442 333 44455555 555554322211 11233455566 777777765421000 0
Q ss_pred CceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCC--CCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCC
Q 039689 351 KLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCT--SLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS 428 (763)
Q Consensus 351 ~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~ 428 (763)
..+|..+.. +++|+.|++++|..+. .++.++.+++|++|++++|..+..... .....+++
T Consensus 212 -----------~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~~~~ 273 (336)
T 2ast_B 212 -----------SDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----LELGEIPT 273 (336)
T ss_dssp -----------HHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----GGGGGCTT
T ss_pred -----------HHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----HHHhcCCC
Confidence 011112222 5667777777766322 233566667777777776652211110 01123667
Q ss_pred cceeeccc
Q 039689 429 LETLFFVD 436 (763)
Q Consensus 429 L~~L~l~~ 436 (763)
|++|++.+
T Consensus 274 L~~L~l~~ 281 (336)
T 2ast_B 274 LKTLQVFG 281 (336)
T ss_dssp CCEEECTT
T ss_pred CCEEeccC
Confidence 77777766
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=1.1e-14 Score=154.82 Aligned_cols=89 Identities=27% Similarity=0.284 Sum_probs=70.2
Q ss_pred hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCch----hcchhh-------hhcccccEEeecc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIE----ILRESI-------NTLYNLHTLLLED 252 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp~~~-------~~L~~L~~L~L~~ 252 (763)
++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45556778899999999998775 3345788999999999997554 335444 6889999999999
Q ss_pred cccccc-----ccccccCcccccccccCCcc
Q 039689 253 CRRLKK-----LCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 253 ~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 278 (763)
| .+.. +|..+..+++|++|++++|.
T Consensus 104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp C-CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred C-cCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 5 4544 77788899999999999987
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=1.5e-14 Score=150.77 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=89.1
Q ss_pred cccEEEecCCCCCccCcccCCC--CcccEEecCCCCchhcchhhhhcccccEEeecccccccc-ccccccCccccccccc
Q 039689 198 RLRVFSLRGYNIFELPKAIENL--KHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK-LCKDMGNLTKLHHLNN 274 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp~~~~~l--~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l 274 (763)
.++.++++++.+. |..+..+ .++++|++++|.+...+..+..+++|++|++++|..... +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4788999998876 5667777 899999999999998877788999999999999753333 7778999999999999
Q ss_pred CCccccc-ccc-cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeec
Q 039689 275 SNVGSLE-EML-MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWG 329 (763)
Q Consensus 275 ~~~~~l~-~l~-~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 329 (763)
++|. +. ..+ .+..+++|+ .|.+.+...+.. ......+.++++|+.|++++|
T Consensus 126 ~~~~-l~~~~~~~l~~~~~L~-~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 126 EGLR-LSDPIVNTLAKNSNLV-RLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCB-CCHHHHHHHTTCTTCS-EEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCC
T ss_pred cCcc-cCHHHHHHHhcCCCCC-EEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCC
Confidence 9997 43 222 255566666 666655422211 012233445556666666544
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=1.4e-11 Score=122.23 Aligned_cols=165 Identities=21% Similarity=0.294 Sum_probs=94.2
Q ss_pred ceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689 559 RTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL 636 (763)
Q Consensus 559 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 636 (763)
+++++++ +.++.+|..+ .++++.|++++|.. ..++. +..+++|++|++++|. ++.++...+ ..+++|+.|
T Consensus 17 ~~l~~~~-~~l~~~p~~~----~~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 88 (251)
T 3m19_A 17 KEVDCQG-KSLDSVPSGI----PADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVF-DDLTELGTL 88 (251)
T ss_dssp TEEECTT-CCCSSCCSCC----CTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEE
T ss_pred eEEecCC-CCccccCCCC----CCCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCc-CCccCHhHh-ccCCcCCEE
Confidence 3344443 5666777653 35677777776553 33332 5566777777777774 344433322 567777777
Q ss_pred eeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccC-C
Q 039689 637 AIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSS-I 711 (763)
Q Consensus 637 ~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~-~ 711 (763)
++++| .++.++...+. .+++|+.|++++ +.+..++. .+++|++|++++ +.++.+|. .
T Consensus 89 ~L~~n-~l~~~~~~~~~--------------~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 150 (251)
T 3m19_A 89 GLANN-QLASLPLGVFD--------------HLTQLDKLYLGG--NQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGA 150 (251)
T ss_dssp ECTTS-CCCCCCTTTTT--------------TCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred ECCCC-cccccChhHhc--------------ccCCCCEEEcCC--CcCCCcChhHhccCCcccEEECcC-CcCCccCHHH
Confidence 77776 55555544331 233444444443 33444443 345677777777 46666665 3
Q ss_pred CCCCCCcCceecccCCCCccccCCC--cccccceeeeccCh
Q 039689 712 GENLTSLKFLDLDNCPKLKYFSKQG--LPKSLLRLIIDECP 750 (763)
Q Consensus 712 ~~~l~~L~~L~l~~c~~L~~l~~~~--~~~~L~~L~i~~C~ 750 (763)
+..+++|++|++++| +++.++... -.++|+.|+++++|
T Consensus 151 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 466677777777764 566665422 23567777776654
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=4e-12 Score=139.96 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=68.2
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 276 (763)
.+|++|++++|.++.+|..+. ++|++|+|++|.++.+| +.+++|++|++++ +.+..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch-hhc--CCCEEECCC
Confidence 389999999999999998764 89999999999999999 5689999999999 47788988 776 999999999
Q ss_pred ccccccccc
Q 039689 277 VGSLEEMLM 285 (763)
Q Consensus 277 ~~~l~~l~~ 285 (763)
|. +..+|.
T Consensus 130 N~-l~~lp~ 137 (571)
T 3cvr_A 130 NQ-LTMLPE 137 (571)
T ss_dssp SC-CSCCCC
T ss_pred Cc-CCCCCC
Confidence 97 555543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=4.1e-13 Score=133.96 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=76.8
Q ss_pred CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN 274 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 274 (763)
.+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++ +.+..+|. ++++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEEC
Confidence 4556777788889998887 6889999999999999999998 799999999999999 57888887 999999999999
Q ss_pred CCcccccccccCCCccCCC
Q 039689 275 SNVGSLEEMLMLKSLVHLQ 293 (763)
Q Consensus 275 ~~~~~l~~l~~l~~L~~L~ 293 (763)
++|. +..++.+.. .+|+
T Consensus 93 ~~N~-l~~l~~~~~-~~L~ 109 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS-ACLS 109 (263)
T ss_dssp CSSC-CSCCTTCCC-SSCC
T ss_pred CCCc-cCCcCcccc-Cccc
Confidence 9997 666554333 3343
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=4.4e-12 Score=128.61 Aligned_cols=97 Identities=25% Similarity=0.397 Sum_probs=81.2
Q ss_pred ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH 271 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 271 (763)
.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+++|++|++++| .+..++ .++.+++|++
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~ 138 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLES 138 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCE
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCE
Confidence 46778999999999999999877 9999999999999999999765 999999999999994 677774 5999999999
Q ss_pred cccCCcccccccccCCCccCCC
Q 039689 272 LNNSNVGSLEEMLMLKSLVHLQ 293 (763)
Q Consensus 272 L~l~~~~~l~~l~~l~~L~~L~ 293 (763)
|++++|. +..++.+..+++|+
T Consensus 139 L~l~~n~-l~~~~~l~~l~~L~ 159 (291)
T 1h6t_A 139 LYLGNNK-ITDITVLSRLTKLD 159 (291)
T ss_dssp EECCSSC-CCCCGGGGGCTTCS
T ss_pred EEccCCc-CCcchhhccCCCCC
Confidence 9999997 55444333333333
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=6.2e-12 Score=122.60 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=36.0
Q ss_pred EEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccccCCcc
Q 039689 201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVG 278 (763)
Q Consensus 201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 278 (763)
.++.+++.++.+|..+. ++|++|+|++|.++.+ |..|+.+++|++|+|++ +.+..+|.. ++.+++|++|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCc
Confidence 34444444555544332 4555555555555544 34445555555555555 234444433 3455555555555544
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=3.5e-13 Score=141.72 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=68.0
Q ss_pred hhhhccCCCCcccEEEecCCCCCccC-----cccCCCC-cccEEecCCCCchhc-chhhhhc-----ccccEEeeccccc
Q 039689 188 NVLQRLLNLPRLRVFSLRGYNIFELP-----KAIENLK-HLRFLDLSTTKIEIL-RESINTL-----YNLHTLLLEDCRR 255 (763)
Q Consensus 188 ~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~i~~l-p~~~~~L-----~~L~~L~L~~~~~ 255 (763)
.++..+...++|++|++++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 34444466667999999999988775 5677788 899999999988865 6667765 889999999854
Q ss_pred cccc-ccccc----Cc-ccccccccCCcccccc
Q 039689 256 LKKL-CKDMG----NL-TKLHHLNNSNVGSLEE 282 (763)
Q Consensus 256 l~~l-p~~i~----~L-~~L~~L~l~~~~~l~~ 282 (763)
+... +..++ .+ ++|++|++++|. +..
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 123 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSS 123 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCc
Confidence 5433 33333 34 789999998887 443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=7.2e-12 Score=121.22 Aligned_cols=76 Identities=16% Similarity=0.289 Sum_probs=41.8
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 277 (763)
+.++++++.++.+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555555555555443 455666666666655543 4555666666666653 33333 444556666666666655
Q ss_pred c
Q 039689 278 G 278 (763)
Q Consensus 278 ~ 278 (763)
.
T Consensus 91 ~ 91 (220)
T 2v9t_B 91 K 91 (220)
T ss_dssp C
T ss_pred c
Confidence 4
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=2.2e-12 Score=124.00 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=70.7
Q ss_pred CCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCccccccc
Q 039689 196 LPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL 272 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 272 (763)
.++|++|++++|.++.++ ..|..+++|++|++++|.++.+|.. |+.+++|++|++++ +.+..+|.. ++.+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCEE
Confidence 457899999999988886 4578899999999999999888654 68899999999998 467777665 6889999999
Q ss_pred ccCCcccccccc
Q 039689 273 NNSNVGSLEEML 284 (763)
Q Consensus 273 ~l~~~~~l~~l~ 284 (763)
++++|. +..++
T Consensus 106 ~L~~N~-l~~~~ 116 (208)
T 2o6s_A 106 ALNTNQ-LQSLP 116 (208)
T ss_dssp ECCSSC-CCCCC
T ss_pred EcCCCc-CcccC
Confidence 999887 55443
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=7.1e-13 Score=139.37 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=32.9
Q ss_pred EecCCCCCcc-CcccCCCCcccEEecCCCCchhcc-----hhhhhcc-cccEEeeccccccccc-cccccCc-----ccc
Q 039689 203 SLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILR-----ESINTLY-NLHTLLLEDCRRLKKL-CKDMGNL-----TKL 269 (763)
Q Consensus 203 ~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~L~~~~~l~~l-p~~i~~L-----~~L 269 (763)
.+++|.++.. |..+....+|++|+|++|.++..+ ..+..++ +|++|+|++| .+... +..++.+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence 4444444432 333333333555555555554443 3344444 4555555553 22222 3333333 455
Q ss_pred cccccCCcc
Q 039689 270 HHLNNSNVG 278 (763)
Q Consensus 270 ~~L~l~~~~ 278 (763)
++|++++|.
T Consensus 83 ~~L~Ls~n~ 91 (362)
T 3goz_A 83 TSLNLSGNF 91 (362)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCc
Confidence 555555554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=9.4e-12 Score=120.41 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=94.0
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc--hhhhhcccccEEeeccccccccccc-cccCcccccccccCC
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR--ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSN 276 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 276 (763)
+++++++|.++.+|..+. ..+++|+|++|.++.++ ..|+.+++|++|+|++ +.+..+|. .|+.+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCC
Confidence 578888888888887654 45678888888888773 3478888888888888 45666655 588888888888888
Q ss_pred cccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEE
Q 039689 277 VGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTI 356 (763)
Q Consensus 277 ~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~ 356 (763)
|. +..++. ..+.++++|+.|++++|.....
T Consensus 91 N~-l~~~~~---------------------------~~~~~l~~L~~L~Ls~N~l~~~---------------------- 120 (220)
T 2v70_A 91 NR-LENVQH---------------------------KMFKGLESLKTLMLRSNRITCV---------------------- 120 (220)
T ss_dssp SC-CCCCCG---------------------------GGGTTCSSCCEEECTTSCCCCB----------------------
T ss_pred Cc-cCccCH---------------------------hHhcCCcCCCEEECCCCcCCeE----------------------
Confidence 86 433321 2234444555555544421110
Q ss_pred eeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccC
Q 039689 357 TGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMG 408 (763)
Q Consensus 357 ~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~ 408 (763)
.|..+.. +++|+.|++++|......| .+..+++|+.|++++|+
T Consensus 121 -------~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 121 -------GNDSFIG--LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -------CTTSSTT--CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred -------CHhHcCC--CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 1233333 5677777777775444333 56667777777777653
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=3.2e-11 Score=132.77 Aligned_cols=176 Identities=28% Similarity=0.368 Sum_probs=104.7
Q ss_pred cccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccC
Q 039689 472 ALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRC 551 (763)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~ 551 (763)
+|+.|++++|....++. ..+++|++|++++|... .+|..+++|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~---------------------~l~~~L~~L~Ls~N~l~--------~ip~~l~~L~~L~Ls~- 109 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD---------------------NLPPQITVLEITQNALI--------SLPELPASLEYLDACD- 109 (571)
T ss_dssp TCSEEECCSSCCSCCCS---------------------CCCTTCSEEECCSSCCS--------CCCCCCTTCCEEECCS-
T ss_pred CccEEEeCCCCCCccCH---------------------hHcCCCCEEECcCCCCc--------ccccccCCCCEEEccC-
Confidence 67788887775443211 12356777777777533 3443334444444444
Q ss_pred CchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCC
Q 039689 552 PQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSST 631 (763)
Q Consensus 552 ~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 631 (763)
|.++.+|. + ..+|++|++++|. ++.+|. .+++|++|++++| .++.+|. .++
T Consensus 110 ---------------N~l~~ip~-l----~~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~lp~-----~l~ 160 (571)
T 3cvr_A 110 ---------------NRLSTLPE-L----PASLKHLDVDNNQ-LTMLPE--LPALLEYINADNN-QLTMLPE-----LPT 160 (571)
T ss_dssp ---------------SCCSCCCC-C----CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCCC-----CCT
T ss_pred ---------------CCCCCcch-h----hcCCCEEECCCCc-CCCCCC--cCccccEEeCCCC-ccCcCCC-----cCC
Confidence 45666665 2 2377777776654 455665 5677777777777 3455654 356
Q ss_pred CcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCCCCc-------CeEeeccCCC
Q 039689 632 SLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASL-------TELKISDMPS 704 (763)
Q Consensus 632 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L-------~~L~l~~~~~ 704 (763)
+|+.|++++| .++.+|. +.++|+.|++ ++ +.+..+|....+| +.|++++ +.
T Consensus 161 ~L~~L~Ls~N-~L~~lp~--l~~~L~~L~L----------------s~--N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~ 218 (571)
T 3cvr_A 161 SLEVLSVRNN-QLTFLPE--LPESLEALDV----------------ST--NLLESLPAVPVRNHHSEETEIFFRCRE-NR 218 (571)
T ss_dssp TCCEEECCSS-CCSCCCC--CCTTCCEEEC----------------CS--SCCSSCCCCC--------CCEEEECCS-SC
T ss_pred CcCEEECCCC-CCCCcch--hhCCCCEEEC----------------cC--CCCCchhhHHHhhhcccccceEEecCC-Cc
Confidence 7777777777 5555554 3334444433 32 2333333322355 8888888 57
Q ss_pred CccccCCCCCCCCcCceecccCCC
Q 039689 705 LERLSSIGENLTSLKFLDLDNCPK 728 (763)
Q Consensus 705 l~~ip~~~~~l~~L~~L~l~~c~~ 728 (763)
++.+|..+..+++|+.|++++|+-
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ceecCHHHhcCCCCCEEEeeCCcC
Confidence 788887777788888888888753
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=9.6e-12 Score=120.34 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=98.3
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
+.|+.|++++|.++.+| ..|..+++|++|+|++|.++.+ |..|.++++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence 67999999999999886 5789999999999999999977 78899999999999999 578888876 68899999999
Q ss_pred cCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689 274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV 330 (763)
Q Consensus 274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 330 (763)
+++|. +..++. +..+++|+ .|.+.+. .+.......+..+++|+.|++++|.
T Consensus 111 L~~N~-l~~~~~~~~~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANK-INCLRVDAFQDLHNLN-LLSLYDN----KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCC-EEECCSS----CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC-CCEeCHHHcCCCCCCC-EEECCCC----cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99997 666543 56666666 6666542 2233333456667777777776664
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.26 E-value=4e-12 Score=141.60 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=131.2
Q ss_pred ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcc
Q 039689 199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 278 (763)
+..+.+..+.+..++ .+..+.+|++|++++|.+..+| .++.+++|+.|+|++ +.+..+|+ ++.+++|++|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTT-SCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeC-CCCCCChh-hccCCCCCEEECcCCC
Confidence 344455556665553 3568899999999999999987 699999999999999 46777877 9999999999999998
Q ss_pred cccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEee
Q 039689 279 SLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITG 358 (763)
Q Consensus 279 ~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~ 358 (763)
+..++.+..+++|+ .|.+.+..- ... ..+..+++|+.|+++.|..
T Consensus 99 -l~~l~~l~~l~~L~-~L~Ls~N~l----~~l--~~l~~l~~L~~L~Ls~N~l--------------------------- 143 (605)
T 1m9s_A 99 -IKDLSSLKDLKKLK-SLSLEHNGI----SDI--NGLVHLPQLESLYLGNNKI--------------------------- 143 (605)
T ss_dssp -CCCCTTSTTCTTCC-EEECTTSCC----CCC--GGGGGCTTCSEEECCSSCC---------------------------
T ss_pred -CCCChhhccCCCCC-EEEecCCCC----CCC--ccccCCCccCEEECCCCcc---------------------------
Confidence 88888888888887 777765321 111 2356667777777765532
Q ss_pred eCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccc
Q 039689 359 YGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVD 436 (763)
Q Consensus 359 ~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 436 (763)
..+ ..+.. +++|+.|+|++|... .++++..+++|+.|+|++|.... +. . ...+++|+.|++.+
T Consensus 144 ---~~l-~~l~~--l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~i~~-l~-~------l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 144 ---TDI-TVLSR--LTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISD-LR-A------LAGLKNLDVLELFS 206 (605)
T ss_dssp ---CCC-GGGGS--CTTCSEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCB-CG-G------GTTCTTCSEEECCS
T ss_pred ---CCc-hhhcc--cCCCCEEECcCCcCC-CchhhccCCCCCEEECcCCCCCC-Ch-H------HccCCCCCEEEccC
Confidence 222 12333 788999999988644 44448888899999998874432 11 1 23467777777776
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=8.9e-12 Score=118.44 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=102.8
Q ss_pred ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-cchhhhhcccccEEeeccccccccccccccCccccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-LRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH 270 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 270 (763)
.+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..++.+++|++|++++|......|..++.+++|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 4677889999999999876664 78889999999999999985 678889999999999999654445777799999999
Q ss_pred ccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689 271 HLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV 330 (763)
Q Consensus 271 ~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 330 (763)
+|++++|..+..++.+..+++|+ .+.+.+.. +.... .+..+++|+.|++.+|.
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~-~L~l~~n~----i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELK-SLNIQFDG----VHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCC-EEECTTBC----CCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEEccCCCCccccHhhcCCCCCC-EEECCCCC----CcChH--HhccCCCCCEEEeeCcc
Confidence 99999997677777778888887 77776532 11211 56677888888887764
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=1.5e-13 Score=152.15 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=93.9
Q ss_pred cCCCCcccEEecCCCCchhcchhhhhcccccEEeecccc-------------ccccccccccCcccccccc-cCCccccc
Q 039689 216 IENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR-------------RLKKLCKDMGNLTKLHHLN-NSNVGSLE 281 (763)
Q Consensus 216 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~-------------~l~~lp~~i~~L~~L~~L~-l~~~~~l~ 281 (763)
+...++|+.|+|++|.++.+|++++++++|+.|++++|. .....|..++.+++|+.|+ ++.+. +.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence 367889999999999999999999999999999987753 3445667788999999998 55553 33
Q ss_pred ccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeC
Q 039689 282 EMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYG 360 (763)
Q Consensus 282 ~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~ 360 (763)
.++. +.+.. +.+.... ...|+.|++++|..... ..+..++.| .|.+.++.
T Consensus 424 ~L~~----------l~l~~----n~i~~l~------~~~L~~L~Ls~n~l~~l---------p~~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 424 DLRS----------KFLLE----NSVLKME------YADVRVLHLAHKDLTVL---------CHLEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HHHH----------HHHHH----HHHHHHH------HTTCSEEECTTSCCSSC---------CCGGGGTTCCEEECCSSC
T ss_pred hhhh----------hhhhc----ccccccC------ccCceEEEecCCCCCCC---------cCccccccCcEeecCccc
Confidence 3321 00000 0000000 01345555544432211 012222333 44444444
Q ss_pred CCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccC
Q 039689 361 GTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMG 408 (763)
Q Consensus 361 ~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 408 (763)
...+|..++. +++|+.|++++|... .+|.++.+++|+.|++++|.
T Consensus 475 l~~lp~~~~~--l~~L~~L~Ls~N~l~-~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 475 LRALPPALAA--LRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp CCCCCGGGGG--CTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSC
T ss_pred ccccchhhhc--CCCCCEEECCCCCCC-CCcccCCCCCCcEEECCCCC
Confidence 5556665554 667777777766433 35566666666666666654
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=5.6e-13 Score=141.67 Aligned_cols=214 Identities=16% Similarity=0.114 Sum_probs=127.6
Q ss_pred hhhccCCCCcccEEEecCCCCCc----cCccc-------CCCCcccEEecCCCCchh-----cchhhhhcccccEEeecc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE----LPKAI-------ENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLED 252 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~----lp~~~-------~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~ 252 (763)
+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.++. +|..+..+++|++|+|++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 44457789999999999986553 34333 788999999999998886 788999999999999999
Q ss_pred ccccc----cccccccCc---------ccccccccCCccccc--ccc----cCCCccCCCceeeecCccccc-Ccccchh
Q 039689 253 CRRLK----KLCKDMGNL---------TKLHHLNNSNVGSLE--EML----MLKSLVHLQGTLEISRLENVK-GVGDASE 312 (763)
Q Consensus 253 ~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~l~--~l~----~l~~L~~L~~~L~~~~~~~~~-~~~~~~~ 312 (763)
|..-. .++..+..+ ++|++|++++|. +. .++ .+..+++|+ .|.+.+..-.. .......
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~-~L~L~~n~l~~~g~~~l~~ 209 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLL 209 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCC-EEECCSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcC-EEECcCCCCCHhHHHHHHH
Confidence 64322 233334444 899999999987 43 233 133444555 55554421100 0000111
Q ss_pred hhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCC---
Q 039689 313 VQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS--- 389 (763)
Q Consensus 313 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~--- 389 (763)
..+..+++|+.|++++|...... ...+|.++.. +++|+.|++++|.....
T Consensus 210 ~~l~~~~~L~~L~Ls~n~l~~~g-------------------------~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 210 EGLAYCQELKVLDLQDNTFTHLG-------------------------SSALAIALKS--WPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp TTGGGCTTCCEEECCSSCCHHHH-------------------------HHHHHHHGGG--CTTCCEEECTTCCCCHHHHH
T ss_pred HHhhcCCCccEEECcCCCCCcHH-------------------------HHHHHHHHcc--CCCcCEEECCCCCCchhhHH
Confidence 24455566666666554211000 0223334433 67788888888763322
Q ss_pred -CC-CC--CCCCCCCcceecccCCce----EeCccccCCCcCCCCCCcceeeccc
Q 039689 390 -LP-SV--GQLPFLKDPVISGMGRVK----IVGSEFYGSSCSVSFPSLETLFFVD 436 (763)
Q Consensus 390 -l~-~l--~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~f~~L~~L~l~~ 436 (763)
++ .+ +.+++|+.|++++|.... .+...+. ..+++|++|++.+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-----~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-----EKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-----HHCTTCCEEECTT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-----hcCCCceEEEccC
Confidence 22 23 447788888888765433 1221110 1267888888877
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.1e-11 Score=114.55 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=89.0
Q ss_pred CCCCcccEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccc-ccccccCccccc
Q 039689 194 LNLPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK-LCKDMGNLTKLH 270 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~ 270 (763)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++.+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence 34577888888888887 7787788888888888888888877 67788888888888885 4544 666666788888
Q ss_pred ccccCCcccccccc---cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689 271 HLNNSNVGSLEEML---MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV 330 (763)
Q Consensus 271 ~L~l~~~~~l~~l~---~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 330 (763)
+|++++|. +..++ .+..+++|+ .+.+.+.. +..........+..+++|+.|++..|.
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~-~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLK-SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCC-EEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCC-EEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888886 66553 355555565 55554421 111111112356666777777776653
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=2.7e-11 Score=118.04 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=99.5
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
++|++|++++|.++.+ |..|..+++|++|+|++|.++.+|. .|+.+++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhCeEe
Confidence 7899999999999887 6788999999999999999998875 468999999999999 477777765 78899999999
Q ss_pred cCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689 274 NSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD 332 (763)
Q Consensus 274 l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 332 (763)
+++|. +..+|. +..+.+|+ .|.+.+. .+.......+..+++|+.|++..|...
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLT-HLALDQN----QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCS-EEECCSS----CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCc-ccccCcccccCCCCC-EEECCCC----cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99998 777764 55666666 6666542 222333345667777888877766443
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=3e-11 Score=126.73 Aligned_cols=80 Identities=24% Similarity=0.211 Sum_probs=46.6
Q ss_pred cccEEEecCCCCCccC-cccC-CCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 198 RLRVFSLRGYNIFELP-KAIE-NLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp-~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
.+++|+|++|.++.++ ..|. .+++|++|+|++|.|+.+| ..|.++++|++|+|++ +.+..+|.. |..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCEEE
Confidence 3566666666666654 3344 5666666666666666554 3456666666666666 345555443 56666666666
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
+++|.
T Consensus 119 L~~N~ 123 (361)
T 2xot_A 119 LYNNH 123 (361)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 66665
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.2e-11 Score=111.58 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=57.4
Q ss_pred CCcccEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccc-ccccccCccccccc
Q 039689 196 LPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK-LCKDMGNLTKLHHL 272 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L 272 (763)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 355666666666665 5566666666666666666666655 55666666666666663 3333 55555556666666
Q ss_pred ccCCccccccc---ccCCCccCCCceeeec
Q 039689 273 NNSNVGSLEEM---LMLKSLVHLQGTLEIS 299 (763)
Q Consensus 273 ~l~~~~~l~~l---~~l~~L~~L~~~L~~~ 299 (763)
++++|. +..+ ..+..+++|+ .+.+.
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~-~L~l~ 121 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLK-SLDLF 121 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCC-EEECT
T ss_pred ECCCCc-CCChHHHHHHhhCCCCC-EEeCc
Confidence 666665 4443 2234444444 44443
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.17 E-value=6e-11 Score=114.70 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=96.9
Q ss_pred CcccEEEecCCCCCccC--cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCccccccc
Q 039689 197 PRLRVFSLRGYNIFELP--KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL 272 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 272 (763)
+.+++|++++|.++.++ ..|..+++|++|+|++|.++.++. .|+++++|++|+|++| .+..+|.. ++.+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence 35689999999998873 458889999999999999988865 7899999999999984 56666554 8899999999
Q ss_pred ccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccC
Q 039689 273 NNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR 331 (763)
Q Consensus 273 ~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 331 (763)
++++|. +..++. +..+.+|+ .|.+.+ +.+....+..+..+++|+.|++++|..
T Consensus 111 ~Ls~N~-l~~~~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNR-ITCVGNDSFIGLSSVR-LLSLYD----NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSC-CCCBCTTSSTTCTTCS-EEECTT----SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCc-CCeECHhHcCCCccCC-EEECCC----CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999987 666632 66777777 676655 223334445677778888888877643
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2.9e-11 Score=109.11 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=82.4
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-cchhhhhcccccEEeecccccccccc--ccccC
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-LRESINTLYNLHTLLLEDCRRLKKLC--KDMGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~L~~~~~l~~lp--~~i~~ 265 (763)
++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++|++++| .+..+| ..++.
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~ 111 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKK 111 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhh
Confidence 455668899999999999999988 789999999999999999998 7888899999999999995 677765 77999
Q ss_pred cccccccccCCcccccccc
Q 039689 266 LTKLHHLNNSNVGSLEEML 284 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~l~ 284 (763)
+++|++|++++|. +..++
T Consensus 112 l~~L~~L~l~~N~-l~~~~ 129 (149)
T 2je0_A 112 LENLKSLDLFNCE-VTNLN 129 (149)
T ss_dssp CTTCCEEECTTCG-GGGST
T ss_pred CCCCCEEeCcCCc-ccchH
Confidence 9999999999997 65554
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=1.9e-11 Score=139.92 Aligned_cols=109 Identities=21% Similarity=0.233 Sum_probs=90.7
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK 268 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 268 (763)
.+..+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..|++|++|++|+|++ +.+..+|..|++|++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCC
Confidence 3556688999999999999999999888899999999999999999999999999999999999 567799999999999
Q ss_pred ccccccCCccccccccc-CCCccCCCceeeecC
Q 039689 269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISR 300 (763)
Q Consensus 269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~ 300 (763)
|++|+|++|. +..+|. +..|++|+ .|.+.+
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~-~L~L~~ 325 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQ-FLGVEG 325 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCC-CEECTT
T ss_pred CCEEECCCCC-CCccChhhhcCCCcc-EEeCCC
Confidence 9999999997 777764 55566665 555544
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.1e-10 Score=110.10 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=42.9
Q ss_pred cccEEEecCCCCCccCc--ccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 198 RLRVFSLRGYNIFELPK--AIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
.+++|++++|.++.++. .|+.+++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. ++.+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEE
Confidence 55555555555555543 255555555555555555544 44555555555555555 234444332 55555555555
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
+++|.
T Consensus 109 L~~N~ 113 (192)
T 1w8a_A 109 LYDNQ 113 (192)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55554
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=108.84 Aligned_cols=81 Identities=28% Similarity=0.417 Sum_probs=48.7
Q ss_pred CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCccccccccc
Q 039689 197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNN 274 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 274 (763)
++|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..|.++++|++|+|++ +.+..+|. .|+.+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEEC
Confidence 3566666666666666666666666666666666666553 3456666666666666 34444443 3666666666666
Q ss_pred CCcc
Q 039689 275 SNVG 278 (763)
Q Consensus 275 ~~~~ 278 (763)
++|.
T Consensus 110 ~~N~ 113 (193)
T 2wfh_A 110 HGND 113 (193)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6665
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=4e-11 Score=111.60 Aligned_cols=131 Identities=25% Similarity=0.259 Sum_probs=87.0
Q ss_pred cCCCCcccEEEecCCCCCccCcccCCCC-cccEEecCCCCchhcchhhhhcccccEEeeccccccccccccc-cCccccc
Q 039689 193 LLNLPRLRVFSLRGYNIFELPKAIENLK-HLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDM-GNLTKLH 270 (763)
Q Consensus 193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 270 (763)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++ +.+..+|+.+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCC
Confidence 4567778888888888877754 44444 888888888888777 5777888888888888 4667777654 7788888
Q ss_pred ccccCCccccccccc---CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeec
Q 039689 271 HLNNSNVGSLEEMLM---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWG 329 (763)
Q Consensus 271 ~L~l~~~~~l~~l~~---l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 329 (763)
+|++++|. +..+|. +..+++|+ .+.+.+..- ..........+..+++|+.|+++.+
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~-~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLT-YLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCC-EEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCC-EEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcC
Confidence 88888886 666554 55556666 566554221 1111111123666777888877665
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=7.6e-11 Score=108.81 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=93.2
Q ss_pred hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-cchhhhhcccccEEeecccccccccc--ccccC
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-LRESINTLYNLHTLLLEDCRRLKKLC--KDMGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~L~~~~~l~~lp--~~i~~ 265 (763)
++..+..+++|++|++++|.++.+ ..|..+++|++|++++|.++. +|..++.+++|++|++++| .+..+| ..++.
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 455567889999999999999988 889999999999999999998 7888889999999999995 788876 67999
Q ss_pred cccccccccCCccccccccc-----CCCccCCCceeeecCc
Q 039689 266 LTKLHHLNNSNVGSLEEMLM-----LKSLVHLQGTLEISRL 301 (763)
Q Consensus 266 L~~L~~L~l~~~~~l~~l~~-----l~~L~~L~~~L~~~~~ 301 (763)
+++|++|++++|. +..++. +..+++|+ .+++.+.
T Consensus 119 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~-~L~l~~n 157 (168)
T 2ell_A 119 LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLT-YLDGYDR 157 (168)
T ss_dssp CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCC-EETTEET
T ss_pred CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCc-EecCCCC
Confidence 9999999999998 777664 66777777 6666543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=3.2e-10 Score=106.94 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=101.4
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 278 (763)
++++++++.++.+|..+. .+|++|+|++|.++.+|..|..+++|++|+|++ +.+..++. .|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCc
Confidence 678999999999997664 689999999999999999999999999999999 56777764 59999999999999998
Q ss_pred ccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccC
Q 039689 279 SLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR 331 (763)
Q Consensus 279 ~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 331 (763)
+..++. +..+++|+ .|.+.+. .+.......+..+++|+.|++.+|..
T Consensus 90 -l~~i~~~~f~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLR-LLSLHGN----DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -CCBCCTTTTTTCTTCC-EEECCSS----CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred -cCEeCHHHhCCCCCCC-EEECCCC----CCCeeChhhhhcCccccEEEeCCCCe
Confidence 777765 77888888 8887662 33344445677889999999988754
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.1e-10 Score=127.06 Aligned_cols=82 Identities=27% Similarity=0.357 Sum_probs=57.1
Q ss_pred cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCc
Q 039689 198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 277 (763)
.|++|++++|.++.+|. |+.+++|++|+|++|.++.+|..|+++++|++|+|++ +.+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC
Confidence 46677777777777765 7777777777777777777777777777777777777 4566666 5777777777777777
Q ss_pred cccccc
Q 039689 278 GSLEEM 283 (763)
Q Consensus 278 ~~l~~l 283 (763)
. +..+
T Consensus 519 ~-l~~~ 523 (567)
T 1dce_A 519 R-LQQS 523 (567)
T ss_dssp C-CCSS
T ss_pred C-CCCC
Confidence 6 4444
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=6e-10 Score=116.81 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=109.8
Q ss_pred eeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CC-CCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689 560 TVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FA-LPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL 636 (763)
Q Consensus 560 ~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 636 (763)
.++.++ +.++.+|..+ .+.++.|++++|. ++.++. +. .+++|++|++++| .++.++...+ ..+++|+.|
T Consensus 22 ~l~c~~-~~l~~iP~~~----~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L 93 (361)
T 2xot_A 22 ILSCSK-QQLPNVPQSL----PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYL 93 (361)
T ss_dssp EEECCS-SCCSSCCSSC----CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEE
T ss_pred EEEeCC-CCcCccCccC----CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEE
Confidence 344443 6788888763 4568899998765 555554 33 6788999999988 4555554322 788899999
Q ss_pred eeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCC
Q 039689 637 AIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIG 712 (763)
Q Consensus 637 ~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~ 712 (763)
++++| .++.++...+. .+.+|+.|++++ +.+..++. .+++|++|++++ +.++.+|...
T Consensus 94 ~Ls~N-~l~~~~~~~~~--------------~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~ 155 (361)
T 2xot_A 94 DLSSN-HLHTLDEFLFS--------------DLQALEVLLLYN--NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVEL 155 (361)
T ss_dssp ECCSS-CCCEECTTTTT--------------TCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGG
T ss_pred ECCCC-cCCcCCHHHhC--------------CCcCCCEEECCC--CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHH
Confidence 99988 67777655442 234555555554 33444432 467899999998 6888888655
Q ss_pred ----CCCCCcCceecccCCCCccccCCCc--ccc--cceeeeccCh
Q 039689 713 ----ENLTSLKFLDLDNCPKLKYFSKQGL--PKS--LLRLIIDECP 750 (763)
Q Consensus 713 ----~~l~~L~~L~l~~c~~L~~l~~~~~--~~~--L~~L~i~~C~ 750 (763)
..+++|+.|+++++ +++.++...+ .++ ++.|+++++|
T Consensus 156 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred hcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 46899999999985 6888775221 122 5788888754
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=4e-11 Score=137.15 Aligned_cols=65 Identities=25% Similarity=0.216 Sum_probs=37.7
Q ss_pred CcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcc
Q 039689 213 PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 213 p~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 278 (763)
|..|..+.+|++|+|++|.+..+|..+.++++|++|+|++ +.+..+|..|++|++|++|+|++|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCc
Confidence 4556666666666666666666666666666666666666 3455666666666666666666665
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=7.1e-12 Score=119.25 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=88.8
Q ss_pred hhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccc
Q 039689 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL 269 (763)
Q Consensus 190 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 269 (763)
+..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++ +.+..+| .++.+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccccCCCC
Confidence 346677899999999999998888 88999999999999999999999889999999999999 4777787 58899999
Q ss_pred cccccCCccccccccc---CCCccCCCceeeecC
Q 039689 270 HHLNNSNVGSLEEMLM---LKSLVHLQGTLEISR 300 (763)
Q Consensus 270 ~~L~l~~~~~l~~l~~---l~~L~~L~~~L~~~~ 300 (763)
++|++++|. +..++. +..+++|+ .+.+.+
T Consensus 118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~-~L~l~~ 149 (198)
T 1ds9_A 118 RVLYMSNNK-ITNWGEIDKLAALDKLE-DLLLAG 149 (198)
T ss_dssp SEEEESEEE-CCCHHHHHHHTTTTTCS-EEEECS
T ss_pred CEEECCCCc-CCchhHHHHHhcCCCCC-EEEecC
Confidence 999999987 665443 66677776 666655
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=3.3e-12 Score=121.60 Aligned_cols=83 Identities=25% Similarity=0.267 Sum_probs=69.7
Q ss_pred cccEEEecCC--CCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689 198 RLRVFSLRGY--NIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS 275 (763)
Q Consensus 198 ~Lr~L~L~~~--~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 275 (763)
.++...+++. .++.+|..|..+++|++|++++|.++.+| .++.+++|++|++++ +.+..+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEECc
Confidence 4566666655 46667778999999999999999999998 999999999999999 5788899888888999999999
Q ss_pred Cccccccc
Q 039689 276 NVGSLEEM 283 (763)
Q Consensus 276 ~~~~l~~l 283 (763)
+|. +..+
T Consensus 102 ~N~-l~~l 108 (198)
T 1ds9_A 102 YNQ-IASL 108 (198)
T ss_dssp EEE-CCCH
T ss_pred CCc-CCcC
Confidence 987 4433
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=7.6e-10 Score=104.39 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=102.5
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh--hhhcccccEEeeccccccccc-cccccCcccccccccCC
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES--INTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSN 276 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 276 (763)
++++++++.++.+|..+.. +|++|++++|.++.+|.. |+.+++|++|+|++| .+..+ |..|+.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999999987754 999999999999988764 899999999999995 56555 67799999999999999
Q ss_pred ccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCC
Q 039689 277 VGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDA 333 (763)
Q Consensus 277 ~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 333 (763)
|. +..++. +..+++|+ .|++.+. .+....+..+..+++|+.|++++|....
T Consensus 88 N~-l~~~~~~~~~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLK-TLNLYDN----QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CC-CCEECSSSSTTCTTCC-EEECCSS----CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred Cc-CCccCHHHhcCCCCCC-EEECCCC----cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 98 777665 77888888 8887662 3444445677888999999998886543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=3.4e-10 Score=105.24 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=86.5
Q ss_pred CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccccccc--cccCccccccc
Q 039689 196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHL 272 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 272 (763)
.++|++|++++|.++.+ ..|..+++|++|+|++|.++.+|+.+ +.+++|++|++++ +.+..+|. .++.+++|++|
T Consensus 41 ~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEE
Confidence 34999999999999988 78999999999999999999998655 9999999999999 57888887 79999999999
Q ss_pred ccCCccccccccc-----CCCccCCCceeeecC
Q 039689 273 NNSNVGSLEEMLM-----LKSLVHLQGTLEISR 300 (763)
Q Consensus 273 ~l~~~~~l~~l~~-----l~~L~~L~~~L~~~~ 300 (763)
++++|. +..+|. +..+++|+ .+++..
T Consensus 119 ~l~~N~-i~~~~~~~~~~~~~l~~L~-~Ld~~~ 149 (176)
T 1a9n_A 119 CILRNP-VTNKKHYRLYVIYKVPQVR-VLDFQK 149 (176)
T ss_dssp ECCSSG-GGGSTTHHHHHHHHCTTCS-EETTEE
T ss_pred EecCCC-CCCcHhHHHHHHHHCCccc-eeCCCc
Confidence 999998 777765 56667776 555543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=8.4e-10 Score=102.05 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=63.0
Q ss_pred CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
++|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. |+++++|++|+|++ +.+..+|.. ++.+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEE
Confidence 6778888888888777 56778888888888888888877665 47788888888887 567777765 77788888888
Q ss_pred cCCcc
Q 039689 274 NSNVG 278 (763)
Q Consensus 274 l~~~~ 278 (763)
+++|.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 88876
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=2.9e-09 Score=99.04 Aligned_cols=86 Identities=24% Similarity=0.376 Sum_probs=62.6
Q ss_pred CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689 197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN 273 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 273 (763)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+|.. ++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEE
Confidence 57788888888877775 4567788888888888888777644 57788888888887 456666654 67788888888
Q ss_pred cCCcccccccc
Q 039689 274 NSNVGSLEEML 284 (763)
Q Consensus 274 l~~~~~l~~l~ 284 (763)
+++|. +..++
T Consensus 107 l~~N~-l~~~~ 116 (177)
T 2o6r_A 107 LDTNQ-LKSVP 116 (177)
T ss_dssp CCSSC-CSCCC
T ss_pred CcCCc-ceEeC
Confidence 88776 54444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=2.3e-09 Score=98.80 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=36.7
Q ss_pred cEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccccCCc
Q 039689 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNV 277 (763)
Q Consensus 200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 277 (763)
+++++++|.++.+|..+. ++|++|+|++|.|+.+ |..|+.+++|++|+|++ +.+..+|.. ++.+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC
Confidence 445555555555544332 4455555555555544 33445555555555555 234444433 345555555555554
Q ss_pred c
Q 039689 278 G 278 (763)
Q Consensus 278 ~ 278 (763)
.
T Consensus 89 ~ 89 (170)
T 3g39_A 89 Q 89 (170)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=2.5e-09 Score=98.89 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=73.3
Q ss_pred ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccccCC
Q 039689 199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSN 276 (763)
Q Consensus 199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 276 (763)
-++++++++.++.+|..+. ++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. ++++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence 3789999999999998775 8999999999999988 66889999999999999 588889877 68999999999999
Q ss_pred ccccccccc
Q 039689 277 VGSLEEMLM 285 (763)
Q Consensus 277 ~~~l~~l~~ 285 (763)
|. +..++.
T Consensus 91 N~-l~~l~~ 98 (174)
T 2r9u_A 91 NH-LKSIPR 98 (174)
T ss_dssp SC-CCCCCT
T ss_pred Cc-cceeCH
Confidence 97 665543
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.89 E-value=3.3e-09 Score=98.60 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=90.9
Q ss_pred ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccccCC
Q 039689 199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSN 276 (763)
Q Consensus 199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 276 (763)
.+.+++++++++.+|..+. ++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|.. ++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCC
Confidence 4678888888888876543 688888888888887765 458888888888888 466777655 68888888888888
Q ss_pred ccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689 277 VGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD 332 (763)
Q Consensus 277 ~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 332 (763)
|. +..++. +..+++|+ .+++.+. .+.......+..+++|+.|++++|...
T Consensus 86 N~-l~~~~~~~~~~l~~L~-~L~l~~N----~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLK-ELALDTN----QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCC-EEECCSS----CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccccCHHHhhCCcccC-EEECcCC----cceEeCHHHhcCCcccCEEEecCCCee
Confidence 87 776665 56777777 7777653 222333444667788888888877543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=3.1e-09 Score=97.83 Aligned_cols=82 Identities=28% Similarity=0.399 Sum_probs=74.9
Q ss_pred CCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCccccccc
Q 039689 196 LPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL 272 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 272 (763)
.+.|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. |..+++|++|+|++ +.+..+|.. ++.+++|++|
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEE
Confidence 37899999999999998 67899999999999999999999765 69999999999999 578888875 8999999999
Q ss_pred ccCCcc
Q 039689 273 NNSNVG 278 (763)
Q Consensus 273 ~l~~~~ 278 (763)
++++|.
T Consensus 108 ~L~~N~ 113 (170)
T 3g39_A 108 WLLNNP 113 (170)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 999997
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2e-08 Score=103.79 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=59.2
Q ss_pred cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCcc-EEEEccCCCCCCCchhhhcCCCCCcc
Q 039689 558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLR-TVTIKGCDALESLPEAWMQNSSTSLE 634 (763)
Q Consensus 558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~l~~L~ 634 (763)
|+.+++.+ +.++.+|...+. .+++|+.+++.++ ++.++. +..+++|+ .+++.+ .++.++...+ ..+++|+
T Consensus 228 L~~l~L~~-n~i~~I~~~aF~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF-~~c~~L~ 300 (329)
T 3sb4_A 228 LVSLDISK-TNATTIPDFTFA-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF-MGCDNLR 300 (329)
T ss_dssp CCEEECTT-BCCCEECTTTTT-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-TTCTTEE
T ss_pred CeEEECCC-CCcceecHhhhh-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-hCCccCC
Confidence 66666665 457777776443 4778888888664 666665 56677787 888876 4666655444 6778888
Q ss_pred eEeeccCCCccccccccC
Q 039689 635 SLAIDSCDSLTYIARIQL 652 (763)
Q Consensus 635 ~L~l~~c~~l~~l~~~~~ 652 (763)
.++++++ .++.++...|
T Consensus 301 ~l~l~~n-~i~~I~~~aF 317 (329)
T 3sb4_A 301 YVLATGD-KITTLGDELF 317 (329)
T ss_dssp EEEECSS-CCCEECTTTT
T ss_pred EEEeCCC-ccCccchhhh
Confidence 8887765 6777766655
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=5.7e-08 Score=100.28 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=119.9
Q ss_pred CCcccEEEecCCCCC--------------------ccC-cccCC--------CCcccEEecCCCCchhcc-hhhhhcccc
Q 039689 196 LPRLRVFSLRGYNIF--------------------ELP-KAIEN--------LKHLRFLDLSTTKIEILR-ESINTLYNL 245 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~--------------------~lp-~~~~~--------l~~L~~L~L~~~~i~~lp-~~~~~L~~L 245 (763)
+++|++|||++|++. .+| ..|.+ +++|+.|+|++ .++.++ .+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 889999999999988 343 35666 88888888888 788775 467888888
Q ss_pred cEEeecccccccccccc-ccCcccccccccCCccc---cccccc--CCCccCCCceeeecCccccc--------------
Q 039689 246 HTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVGS---LEEMLM--LKSLVHLQGTLEISRLENVK-------------- 305 (763)
Q Consensus 246 ~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~---l~~l~~--l~~L~~L~~~L~~~~~~~~~-------------- 305 (763)
+.|++.+ +.+..+++. |....++..+....... ...+.. +.++..|+..+.+.....+.
T Consensus 127 ~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 8888888 455555544 77777777666554211 011110 11111221111111100000
Q ss_pred ------Ccccchhhhh-cCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceE
Q 039689 306 ------GVGDASEVQL-NSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLML 378 (763)
Q Consensus 306 ------~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~ 378 (763)
.........+ ..+++|+.+++..| ....+|..... .+.+|+.
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n------------------------------~i~~I~~~aF~-~~~~L~~ 254 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKT------------------------------NATTIPDFTFA-QKKYLLK 254 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTB------------------------------CCCEECTTTTT-TCTTCCE
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCC------------------------------CcceecHhhhh-CCCCCCE
Confidence 0000000011 12567777777543 23334433221 1677888
Q ss_pred EEEeccCCCCCCC--CCCCCCCCC-cceecccCCceEeC-ccccCCCcCCCCCCcceeecccc-chhhhcCCCCcCCccc
Q 039689 379 LKFDNCGTCTSLP--SVGQLPFLK-DPVISGMGRVKIVG-SEFYGSSCSVSFPSLETLFFVDI-CSKLQGTLPERLLLLE 453 (763)
Q Consensus 379 L~l~~~~~~~~l~--~l~~l~~L~-~L~l~~~~~l~~~~-~~~~~~~~~~~f~~L~~L~l~~~-~~~l~~~~~~~~~~L~ 453 (763)
+++.++ +..++ .|..+++|+ .+.+.+ .+..++ ..|.+ +++|+.+++... ...+.......+++|+
T Consensus 255 l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~------c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 255 IKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMG------CDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTT------CTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred EECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhC------CccCCEEEeCCCccCccchhhhcCCcchh
Confidence 888776 55555 577888888 888876 344443 33433 778888887541 1222223334556666
Q ss_pred EEE
Q 039689 454 KLN 456 (763)
Q Consensus 454 ~L~ 456 (763)
.+.
T Consensus 325 ~ly 327 (329)
T 3sb4_A 325 LIY 327 (329)
T ss_dssp EEE
T ss_pred hhc
Confidence 654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=4.5e-08 Score=101.97 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=68.8
Q ss_pred hhhccCCCCcccEEEecC-CCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccccccC
Q 039689 189 VLQRLLNLPRLRVFSLRG-YNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKDMGN 265 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~i~~ 265 (763)
+|. +..+++|++|+|++ |.++.+| ..|+++++|++|+|++|.++.+| ..|++|++|++|+|++ +.+..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence 566 77888888888886 8888876 67888888888888888888774 4678888888888888 577778776433
Q ss_pred cccccccccCCcc
Q 039689 266 LTKLHHLNNSNVG 278 (763)
Q Consensus 266 L~~L~~L~l~~~~ 278 (763)
..+|+.|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 3348888888876
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=1.3e-07 Score=98.48 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=72.0
Q ss_pred cEEEecCC-CCCccCcccCCCCcccEEecCC-CCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccccC
Q 039689 200 RVFSLRGY-NIFELPKAIENLKHLRFLDLST-TKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNS 275 (763)
Q Consensus 200 r~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~ 275 (763)
..++.+++ .++.+|. |..+++|++|+|++ |.++.+| ..|+.|++|++|+|++| .+..+|+ .|++|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 34688888 8999999 99999999999996 9999987 57999999999999995 6777765 58999999999999
Q ss_pred Cccccccccc
Q 039689 276 NVGSLEEMLM 285 (763)
Q Consensus 276 ~~~~l~~l~~ 285 (763)
+|. +..+|.
T Consensus 89 ~N~-l~~~~~ 97 (347)
T 2ifg_A 89 FNA-LESLSW 97 (347)
T ss_dssp SSC-CSCCCS
T ss_pred CCc-cceeCH
Confidence 998 666553
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=1.3e-05 Score=84.43 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=39.7
Q ss_pred ccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccccccCcccc
Q 039689 192 RLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL 269 (763)
Q Consensus 192 ~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 269 (763)
.|.++ +|+.+.+..+ ++.++ ..|.+. +|+.+.+.. .++.++ .+|.++.+|+.+++.+ +.+..+|...-...+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeeccc
Confidence 34443 4666665443 44453 344442 466666654 444442 4455666666666655 3455555442223555
Q ss_pred cccccC
Q 039689 270 HHLNNS 275 (763)
Q Consensus 270 ~~L~l~ 275 (763)
+.+.+.
T Consensus 206 ~~l~lp 211 (401)
T 4fdw_A 206 EEVLLP 211 (401)
T ss_dssp SEEECC
T ss_pred CEEEeC
Confidence 555554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=1.4e-05 Score=84.43 Aligned_cols=64 Identities=8% Similarity=0.165 Sum_probs=35.1
Q ss_pred CCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccccC
Q 039689 209 IFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNS 275 (763)
Q Consensus 209 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 275 (763)
++.+. .+|.++.+|+.+.+.. .++.++ .+|.++.+|+.+++.+ .+..++.. +.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence 34442 4566666666666653 355553 4566666666666654 24444433 5566666655544
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=1.3e-05 Score=84.66 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=18.7
Q ss_pred CCCceEEEEeccCCCCCCC--CCCCCCCCCcceecc
Q 039689 373 FSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISG 406 (763)
Q Consensus 373 ~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~ 406 (763)
+.+|+.+.+.++. ..++ .+...++|+.+.+..
T Consensus 161 c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 161 CESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCT
T ss_pred cCCCcEEecCCcc--ceeccccccCCCCceEEEcCC
Confidence 4567777765432 2233 466667777777654
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=1.4e-05 Score=84.31 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=124.1
Q ss_pred hhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCcc
Q 039689 190 LQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLT 267 (763)
Q Consensus 190 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 267 (763)
...|.++ .|+.+.+.. .+..++ ..|.++.+|+.+++++|.++.+|...-...+|+.+.+.. .+..++.. |.+++
T Consensus 151 ~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 151 DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTS 226 (401)
T ss_dssp TTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCT
T ss_pred HHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCC
Confidence 3455554 699999985 777774 789999999999999999999976554468999999986 37777655 89999
Q ss_pred cccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhc
Q 039689 268 KLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDM 345 (763)
Q Consensus 268 ~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 345 (763)
+|+.+++..+ +..++. +.+ ..|+ .+.+. ..........|.++++|+.+.+..+.....
T Consensus 227 ~L~~l~l~~~--l~~I~~~aF~~-~~L~-~i~lp-----~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~----------- 286 (401)
T 4fdw_A 227 QLKTIEIPEN--VSTIGQEAFRE-SGIT-TVKLP-----NGVTNIASRAFYYCPELAEVTTYGSTFNDD----------- 286 (401)
T ss_dssp TCCCEECCTT--CCEECTTTTTT-CCCS-EEEEE-----TTCCEECTTTTTTCTTCCEEEEESSCCCCC-----------
T ss_pred CCCEEecCCC--ccCcccccccc-CCcc-EEEeC-----CCccEEChhHhhCCCCCCEEEeCCccccCC-----------
Confidence 9999999864 454443 333 4455 44442 223444456777888888888865432200
Q ss_pred CCCCCCceEEEeeeCCCCCCC-ccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCc-cccCCC
Q 039689 346 LKPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGS-EFYGSS 421 (763)
Q Consensus 346 l~~l~~L~L~~~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~ 421 (763)
....++. .+.. +++|+.+++.++ +..++ .|..+++|+.+.|.++ +..++. .|.
T Consensus 287 --------------~~~~I~~~aF~~--c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~--- 343 (401)
T 4fdw_A 287 --------------PEAMIHPYCLEG--CPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN--- 343 (401)
T ss_dssp --------------TTCEECTTTTTT--CTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS---
T ss_pred --------------cccEECHHHhhC--CccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC---
Confidence 0001111 1222 556666666632 34444 5666677777777442 333332 222
Q ss_pred cCCCCCCcceeeccc
Q 039689 422 CSVSFPSLETLFFVD 436 (763)
Q Consensus 422 ~~~~f~~L~~L~l~~ 436 (763)
.+ +|+.+.+.+
T Consensus 344 ---~~-~L~~l~l~~ 354 (401)
T 4fdw_A 344 ---NT-GIKEVKVEG 354 (401)
T ss_dssp ---SS-CCCEEEECC
T ss_pred ---CC-CCCEEEEcC
Confidence 24 677777765
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=2.6e-07 Score=96.54 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=37.3
Q ss_pred CcccEEEecCCCCCccC-ccc----C-CCCcccEEecCCCCchhc--chhhhhcccccEEeecccccccccc-ccc----
Q 039689 197 PRLRVFSLRGYNIFELP-KAI----E-NLKHLRFLDLSTTKIEIL--RESINTLYNLHTLLLEDCRRLKKLC-KDM---- 263 (763)
Q Consensus 197 ~~Lr~L~L~~~~i~~lp-~~~----~-~l~~L~~L~L~~~~i~~l--p~~~~~L~~L~~L~L~~~~~l~~lp-~~i---- 263 (763)
+.|+.|++++|.++... ..+ . ...+|++|+|++|.++.. ..-...+.+|++|+|++| .+.... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 34556666666654321 111 1 224566666666655421 122234455666666664 332211 111
Q ss_pred -cCcccccccccCCcc
Q 039689 264 -GNLTKLHHLNNSNVG 278 (763)
Q Consensus 264 -~~L~~L~~L~l~~~~ 278 (763)
...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP 166 (372)
T ss_dssp HSTTCCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC
Confidence 223456666666654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=7.5e-06 Score=73.96 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=77.1
Q ss_pred HHHHHHHhcCce-EEecCCC-CCcchhhhhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCC-chhc-ch
Q 039689 163 NDLTRWAAGETC-FRMEDTP-EGERRQNVLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTK-IEIL-RE 237 (763)
Q Consensus 163 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~ 237 (763)
+.-|.|+.+... .++.+.. .-.....+|.....-..|+.||+++|.|+.. -..+.++++|++|+|++|. |+.- -.
T Consensus 25 ~aaA~~~l~~gg~vrf~~~~~w~~~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~ 104 (176)
T 3e4g_A 25 RAASEWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE 104 (176)
T ss_dssp HHHHHHHHHTTCEEEETTCSSCBCCGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH
T ss_pred HHHHHHHHHcCCEEEEcCCceEEeccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH
Confidence 444556665443 3444331 1111222343333345799999999998764 3567899999999999984 7642 34
Q ss_pred hhhhc----ccccEEeecccccccccc-ccccCcccccccccCCccccc
Q 039689 238 SINTL----YNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNVGSLE 281 (763)
Q Consensus 238 ~~~~L----~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~ 281 (763)
.++.+ ++|++|+|++|..++.-- ..+.++++|++|++++|..++
T Consensus 105 ~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 55554 479999999998776531 236788999999999987443
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=1.8e-06 Score=90.09 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCcccEEEecCCCCCcc--CcccCCCCcccEEecCCCCchhc-chhh-----hhcccccEEeecccccccc-----cccc
Q 039689 196 LPRLRVFSLRGYNIFEL--PKAIENLKHLRFLDLSTTKIEIL-RESI-----NTLYNLHTLLLEDCRRLKK-----LCKD 262 (763)
Q Consensus 196 l~~Lr~L~L~~~~i~~l--p~~~~~l~~L~~L~L~~~~i~~l-p~~~-----~~L~~L~~L~L~~~~~l~~-----lp~~ 262 (763)
.+.|+.|+|++|.++.. ..-...+.+|++|+|++|.++.. ...+ ....+|++|+|++| .+.. ++..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 178 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG 178 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence 46788888888877542 22233456778888888877643 2222 23467888888875 3432 4444
Q ss_pred ccCcccccccccCCcccccccc------cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689 263 MGNLTKLHHLNNSNVGSLEEML------MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV 330 (763)
Q Consensus 263 i~~L~~L~~L~l~~~~~l~~l~------~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 330 (763)
+..+++|++|++++|. +.... .+...+.|+ .|++.+..--..........+...++|+.|++++|.
T Consensus 179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~-~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQ-ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCC-EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcC-eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5667778888888876 44321 133344455 555544211100011222234445677777776663
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=6e-06 Score=74.59 Aligned_cols=95 Identities=18% Similarity=0.340 Sum_probs=65.3
Q ss_pred ccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccCc----ccccccccCCcccccc--
Q 039689 211 ELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGNL----TKLHHLNNSNVGSLEE-- 282 (763)
Q Consensus 211 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L----~~L~~L~l~~~~~l~~-- 282 (763)
.+|.....-.+|+.||+++|.|+.. -..+..+++|++|+|++|..+..-- ..++.+ ++|++|++++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4565444446899999999998753 3567899999999999998776532 225554 4799999999975543
Q ss_pred cccCCCccCCCceeeecCcccccC
Q 039689 283 MLMLKSLVHLQGTLEISRLENVKG 306 (763)
Q Consensus 283 l~~l~~L~~L~~~L~~~~~~~~~~ 306 (763)
+..+..+++|+ .|.+.++..+.+
T Consensus 132 l~~L~~~~~L~-~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLK-YLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCC-EEEEESCTTCCC
T ss_pred HHHHhcCCCCC-EEECCCCCCCCc
Confidence 33345555565 566655554443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.1e-05 Score=78.85 Aligned_cols=59 Identities=20% Similarity=0.436 Sum_probs=29.6
Q ss_pred CCCcccEEEecCCCCCccC---cccCCCCcccEEecCCCCchhcchhhhhcc--cccEEeecccc
Q 039689 195 NLPRLRVFSLRGYNIFELP---KAIENLKHLRFLDLSTTKIEILRESINTLY--NLHTLLLEDCR 254 (763)
Q Consensus 195 ~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~--~L~~L~L~~~~ 254 (763)
++++|++|+|++|.++.++ ..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 3455555555555554432 3344555555555555555544 2233333 55555555543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=2.6e-05 Score=72.36 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=70.0
Q ss_pred hhhhccCCCCcccEEEecCC-CCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccccc
Q 039689 188 NVLQRLLNLPRLRVFSLRGY-NIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCRRL 256 (763)
Q Consensus 188 ~~~~~~~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~~l 256 (763)
.+...+...+.|++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|+|++| .+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 34445578899999999999 8764 34667778999999999998873 4566777789999999995 45
Q ss_pred cc-----ccccccCccccccccc--CCcc
Q 039689 257 KK-----LCKDMGNLTKLHHLNN--SNVG 278 (763)
Q Consensus 257 ~~-----lp~~i~~L~~L~~L~l--~~~~ 278 (763)
.. +...+...++|++|++ ++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 43 4566777889999999 6675
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.60 E-value=5e-05 Score=78.46 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=30.1
Q ss_pred CCCcceEEEecCcccccc----CCCCCCCCccEEEEccCCCCCC-----CchhhhcCCCCCcceEeeccC
Q 039689 581 NSSLESLKIRSCNSLVSF----PDFALPSQLRTVTIKGCDALES-----LPEAWMQNSSTSLESLAIDSC 641 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~----~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~c 641 (763)
+++|++|++++|...... .....+++|++|+++.|. ++. ++..+ ..+++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L--~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHV--DKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTH--HHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhc--ccCCcceEEECCCC
Confidence 567777777665532211 111234667777776653 332 12111 34566777777666
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.53 E-value=0.00012 Score=75.56 Aligned_cols=129 Identities=21% Similarity=0.260 Sum_probs=65.3
Q ss_pred CCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCC-------ccccccccCC
Q 039689 581 NSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDS-------LTYIARIQLP 653 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~-------l~~l~~~~~~ 653 (763)
+|+|+.|.+++|..+ .++.+. .++|++|++..|..-......+....+|+|+.|+++.+.+ ++.+... +.
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SC
T ss_pred CCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-Hh
Confidence 678888888776433 233333 5788888888764322211222213678888888753211 1111100 00
Q ss_pred CCCcEEEEecCCCCCCCccceEEecCCCCCcc----cc--CCCCCCcCeEeeccCCCCcc-----ccCCCCCCCCcCcee
Q 039689 654 PSLKRLIIFRCDNLRFNSLRKLKISGGCPDLV----SS--PRFPASLTELKISDMPSLER-----LSSIGENLTSLKFLD 722 (763)
Q Consensus 654 ~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~----~~--~~~~~~L~~L~l~~~~~l~~-----ip~~~~~l~~L~~L~ 722 (763)
.-.+++|+.|.+++ |.--. .+ ...+++|++|+|+. +.++. ++..+..+++|+.|+
T Consensus 248 ------------~~~~p~Lr~L~L~~-~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 248 ------------KDRFPNLKWLGIVD-AEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp ------------TTTCTTCCEEEEES-CTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred ------------cCCCCCcCEEeCCC-CCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEE
Confidence 00133444444433 21100 00 01346788888866 45554 344445677888888
Q ss_pred cccC
Q 039689 723 LDNC 726 (763)
Q Consensus 723 l~~c 726 (763)
+++|
T Consensus 314 L~~n 317 (362)
T 2ra8_A 314 MKYN 317 (362)
T ss_dssp CCSB
T ss_pred CCCC
Confidence 8776
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=1.4e-05 Score=78.20 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCCcccE--EEecCCCCCccCcc----cCCCCcccEEecCCCCchhc---chhhhhcccccEEeecccccccccccccc
Q 039689 194 LNLPRLRV--FSLRGYNIFELPKA----IENLKHLRFLDLSTTKIEIL---RESINTLYNLHTLLLEDCRRLKKLCKDMG 264 (763)
Q Consensus 194 ~~l~~Lr~--L~L~~~~i~~lp~~----~~~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~L~~~~~l~~lp~~i~ 264 (763)
...+.|+. ++++.|....++.. ...+++|++|+|++|.|+.+ |..++.+++|++|+|++ +.+..+ .++.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhh
Confidence 33444444 55566654333322 24678999999999988865 46778999999999998 567666 3355
Q ss_pred Ccc--cccccccCCcc
Q 039689 265 NLT--KLHHLNNSNVG 278 (763)
Q Consensus 265 ~L~--~L~~L~l~~~~ 278 (763)
.+. +|++|++++|.
T Consensus 216 ~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNS 231 (267)
T ss_dssp GGTTSCCSEEECTTST
T ss_pred hcccCCcceEEccCCc
Confidence 555 89999999987
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.32 E-value=8.4e-05 Score=68.93 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=69.9
Q ss_pred hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEee--cccccc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLL--EDCRRL 256 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L--~~~~~l 256 (763)
+...+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|.. +...+...++|++|+| ++| .+
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i 135 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PL 135 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CC
Confidence 45556778999999999999875 34556667899999999999874 5677788889999999 664 45
Q ss_pred cc-----ccccccCcccccccccCCcc
Q 039689 257 KK-----LCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 257 ~~-----lp~~i~~L~~L~~L~l~~~~ 278 (763)
.. +...+...++|++|++++|.
T Consensus 136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 136 GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 43 34456667899999999986
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.20 E-value=0.016 Score=60.82 Aligned_cols=66 Identities=26% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC
Q 039689 580 SNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL 652 (763)
Q Consensus 580 ~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 652 (763)
.+..|+.+.+.+. ...+.. +...++|+.+.+.. .+..++...+ ..+.+|+.+.+.. +++.+....|
T Consensus 263 ~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF 330 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPE--GITQILDDAF 330 (394)
T ss_dssp TCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTT
T ss_pred ecccccEEecccc--cceecCcccccccccccccCCC--cccccCceee-cCCCCcCEEEeCC--cccEehHhHh
Confidence 3677777777432 233433 45557777777753 4566665544 6677788777764 4666665555
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.98 E-value=0.012 Score=61.78 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCc-cccCCCcCCCCCCcceeeccccchhhhcCCCCcC
Q 039689 373 FSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGS-EFYGSSCSVSFPSLETLFFVDICSKLQGTLPERL 449 (763)
Q Consensus 373 ~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~ 449 (763)
+.+|+.+.+.+.. ..+. .+...+.|+.+.+.. .+..++. .| ..+.+|+.+.+.+....+.......+
T Consensus 264 c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF------~~c~~L~~i~lp~~v~~I~~~aF~~C 333 (394)
T 4gt6_A 264 CAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPESVF------AGCISLKSIDIPEGITQILDDAFAGC 333 (394)
T ss_dssp CSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTT------TTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred cccccEEeccccc--ceecCcccccccccccccCCC--cccccCceee------cCCCCcCEEEeCCcccEehHhHhhCC
Confidence 4667777775442 2232 566778888888753 3333332 33 33678888888653233333444567
Q ss_pred CcccEEEEecC-cch-hhcCCCCCcccEEEEecCC
Q 039689 450 LLLEKLNIFRC-EQL-LVTLQCLPALRELEIDGCK 482 (763)
Q Consensus 450 ~~L~~L~l~~~-~~l-~~~l~~l~~L~~L~l~~~~ 482 (763)
.+|+.+.+-.. ..+ ..+|..+++|+.+++.++.
T Consensus 334 ~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 88999988543 233 2468889999999998764
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.67 E-value=0.079 Score=55.06 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC
Q 039689 581 NSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL 652 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 652 (763)
+..|+.+.+..+ ++.+.. +....+|+.+.+.. .+..++...+ ..+++|+.+.+.++ .++.++...|
T Consensus 239 ~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 239 MKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC-SGCSNLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp CSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT-TTCTTCCEEEECCT-TCCEECTTTT
T ss_pred CccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccc-cccccccccccccc-ccceehhhhh
Confidence 444555554321 333332 23334455555533 2334433322 44555555555433 3444444433
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.31 E-value=0.49 Score=48.96 Aligned_cols=127 Identities=13% Similarity=0.209 Sum_probs=74.4
Q ss_pred CCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcE
Q 039689 581 NSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKR 658 (763)
Q Consensus 581 l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 658 (763)
+.+|+.+.+... +..+.. +.....|+.+.+..+ ++.+....+ ..+.+|+.+.+.. .++.++...|.
T Consensus 216 ~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF-~~~~~l~~i~l~~--~i~~i~~~aF~----- 283 (379)
T 4h09_A 216 GKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLL-QNCTALKTLNFYA--KVKTVPYLLCS----- 283 (379)
T ss_dssp CSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTT-TTCTTCCEEEECC--CCSEECTTTTT-----
T ss_pred ccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCcccc-ceeehhccccccc--cceeccccccc-----
Confidence 567777776432 344443 455677888888653 556655444 6677888887753 45566555442
Q ss_pred EEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCcccc
Q 039689 659 LIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFS 733 (763)
Q Consensus 659 L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~~l~ 733 (763)
...+|+.+.+.+ ..++.++. .+.+|+.+.+.. .++.|+.. +.++++|+++.+.+ .++.+.
T Consensus 284 ---------~c~~L~~i~l~~--~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 284 ---------GCSNLTKVVMDN--SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp ---------TCTTCCEEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred ---------cccccccccccc--cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 223444555432 23444443 346788887764 47777653 36778888877743 355554
Q ss_pred C
Q 039689 734 K 734 (763)
Q Consensus 734 ~ 734 (763)
.
T Consensus 349 ~ 349 (379)
T 4h09_A 349 S 349 (379)
T ss_dssp T
T ss_pred h
Confidence 3
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.83 E-value=0.0096 Score=50.99 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=38.2
Q ss_pred cEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccc
Q 039689 200 RVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDC 253 (763)
Q Consensus 200 r~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~ 253 (763)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36777788877 7776543 468888888888888864 4577788888888775
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.35 E-value=0.024 Score=48.45 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=45.1
Q ss_pred cEEecCCCCch--hcchhhhhcccccEEeecccccccccccc-ccCcccccccccCCcc
Q 039689 223 RFLDLSTTKIE--ILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVG 278 (763)
Q Consensus 223 ~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 278 (763)
.+++.+++.++ .+|..+. .+|++|+|++ +.+..+|.+ |..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8886543 4799999999 689999876 7899999999999986
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.01 E-value=0.24 Score=45.34 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=56.4
Q ss_pred CCCCcccEEEecCC-CCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccccccc----
Q 039689 194 LNLPRLRVFSLRGY-NIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCRRLKK---- 258 (763)
Q Consensus 194 ~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~~l~~---- 258 (763)
.+-+.|+.|+|+++ .|.. +-+.+..-+.|+.|+|++|.|.. +-+.+..=+.|++|+|++| .+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 56678888898875 6653 33556677888999999888863 4455666678888988884 4432
Q ss_pred -ccccccCcccccccccCCc
Q 039689 259 -LCKDMGNLTKLHHLNNSNV 277 (763)
Q Consensus 259 -lp~~i~~L~~L~~L~l~~~ 277 (763)
+-+.+..-+.|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2333444556788887754
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.47 E-value=0.13 Score=47.06 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=63.8
Q ss_pred hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccc--cc
Q 039689 189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCR--RL 256 (763)
Q Consensus 189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~--~l 256 (763)
+.+.+..-..|+.|+|++|.+.. +-+.+..-+.|++|+|++|.|.. +-+.+..=+.|+.|+|+++. .+
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 55666778899999999999874 33445566889999999999873 34455555779999998642 22
Q ss_pred c-----cccccccCcccccccccCCcc
Q 039689 257 K-----KLCKDMGNLTKLHHLNNSNVG 278 (763)
Q Consensus 257 ~-----~lp~~i~~L~~L~~L~l~~~~ 278 (763)
. .+...+..=+.|+.|+++.+.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 233334455678888887654
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.73 E-value=2.1 Score=43.40 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHHHHHcCCChHHHHHHHHHhcCCCChHHHHH-HHhhhcccccCCccChHHHHH-HHHh--cCCHhHHHHhhhhcccCCC
Q 039689 27 QKIAMKCKGLPLAAKTLGGLLRGKDDPKDWEN-VLKTEVWDLADDKCDIIPALR-VSYH--FLPPQLKQCFAYCSLFPKD 102 (763)
Q Consensus 27 ~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~-~l~~~~~~~~~~~~~i~~~l~-~Sy~--~L~~~~k~~fl~~~~fp~~ 102 (763)
.+|++.|+|.|.++..+|..+....+...|-. +.+... ..+...+. +.|+ .|++..+..+..+|+ |
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g 302 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK---C 302 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---C
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc---C
Confidence 78999999999999999988754323333321 111110 01112222 2221 677889999999998 3
Q ss_pred CccCHHHHHHHHH-HcCC-cccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCccee-chhHHHH
Q 039689 103 HEFQKEQIILLWA-AEGF-LHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVM-HDLINDL 165 (763)
Q Consensus 103 ~~i~~~~li~~w~-~~g~-~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m-hdli~~~ 165 (763)
. +...+..... ..|. +. ......+++.|++++++...+ +.+.+ |.++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~~~~--------~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 G--KWSDVKRALELEEGIEIS--------DSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp B--CHHHHHHHHHHHHCSCCC--------HHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred C--CHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 2 5566554331 2231 11 134567899999999997653 34554 5666654
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.05 E-value=2.5 Score=42.71 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHH-HHHhhhcccccCCccChHHHH-HHHHhcCCHhHHHHhhhhcccCC
Q 039689 24 EVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWE-NVLKTEVWDLADDKCDIIPAL-RVSYHFLPPQLKQCFAYCSLFPK 101 (763)
Q Consensus 24 ~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~-~~l~~~~~~~~~~~~~i~~~l-~~Sy~~L~~~~k~~fl~~~~fp~ 101 (763)
+.+.+|++.|+|.|.++..++..+....+...|- .+.+.... .+...+ .+.+ . ++..+..+..+|+
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~l~~-~-~~~~~~~l~~la~--- 293 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG-------LIMGELEELRR-R-SPRYVDILRAIAL--- 293 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHH-H-CHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH-------HHHHHHHHHHh-C-ChhHHHHHHHHHh---
Confidence 5678999999999999999987654321222221 11111100 011111 1222 2 6788999998887
Q ss_pred CCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCccee-chhHHHH
Q 039689 102 DHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVM-HDLINDL 165 (763)
Q Consensus 102 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m-hdli~~~ 165 (763)
| ..+...+........- . .+ ......+++.|++++++...+ +.+.+ |.++++.
T Consensus 294 g-~~~~~~l~~~~~~~~~--~----~~-~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~ 347 (350)
T 2qen_A 294 G-YNRWSLIRDYLAVKGT--K----IP-EPRLYALLENLKKMNWIVEED---NTYKIADPVVATV 347 (350)
T ss_dssp T-CCSHHHHHHHHHHTTC--C----CC-HHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHH
T ss_pred C-CCCHHHHHHHHHHHhC--C----CC-HHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHH
Confidence 3 2456666655433210 1 01 134567899999999998752 34555 4555544
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.52 E-value=2 Score=44.68 Aligned_cols=125 Identities=9% Similarity=-0.085 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcC------CChHHHHHHHHH-hc-----CC--CChHHHHHHHhhhcccccCCccChHHHHHHHHhcCCHh
Q 039689 23 KEVGQKIAMKCK------GLPLAAKTLGGL-LR-----GK--DDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQ 88 (763)
Q Consensus 23 ~~~~~~i~~~c~------GlPlal~~~g~~-L~-----~~--~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~ 88 (763)
.+.+..|++.|+ |.|..+..+... .. +. -+.+.+..++..... ...+.-+++.|+++
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~ 309 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIH 309 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHH
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHH
Confidence 356788889999 999655554432 11 11 123444444443210 12344457889999
Q ss_pred HHHHhhhhcccC--CCCccCHHHHHHHHHH-----cCCcccCCCcccHHHHHHHHHHHHHHCCCccccc---CCCCccee
Q 039689 89 LKQCFAYCSLFP--KDHEFQKEQIILLWAA-----EGFLHQENSKRKMEDLGREFVEELHSRSLFHQST---YDASRFVM 158 (763)
Q Consensus 89 ~k~~fl~~~~fp--~~~~i~~~~li~~w~~-----~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~~~m 158 (763)
.+.++..+|.+. .+..++..++...+.. .|.- . . -......++++|++.+++.... +..+++++
T Consensus 310 ~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~ 383 (412)
T 1w5s_A 310 ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK-P----R-GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTL 383 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC-C----C-CHHHHHHHHHHHHHTTSEEEECC-------CCE
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC-C----C-CHHHHHHHHHHHHhCCCEEeecccCCCCCceeE
Confidence 999998888764 3345666666554432 1211 0 0 1234567899999999997753 22344556
Q ss_pred chhH
Q 039689 159 HDLI 162 (763)
Q Consensus 159 hdli 162 (763)
|++.
T Consensus 384 ~~l~ 387 (412)
T 1w5s_A 384 FRLA 387 (412)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6554
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=70.16 E-value=5.4 Score=39.78 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhcC------C--CChHHHHHHHhhhcccccCCccChHHHHHHHHhcCCHhHHHHhhh
Q 039689 24 EVGQKIAMKCKGLPLAAKTLGGLLRG------K--DDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAY 95 (763)
Q Consensus 24 ~~~~~i~~~c~GlPlal~~~g~~L~~------~--~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~ 95 (763)
+....++++|+|.|-.+..+...+.. . -+.+....++.... .++..++...+..+..
T Consensus 191 ~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~---------------~~~~~l~~~e~~~i~~ 255 (324)
T 1hqc_A 191 EAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG---------------LDELGLEKRDREILEV 255 (324)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT---------------CCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---------------ccccCCCHHHHHHHHH
Confidence 56677888899999877766554421 1 12333444433321 1233444444444444
Q ss_pred hcccCCCC-----------ccCHHH----HHHHHHHcCCcccCCCcccHHHHHHHHHH-HHHHCCCccc
Q 039689 96 CSLFPKDH-----------EFQKEQ----IILLWAAEGFLHQENSKRKMEDLGREFVE-ELHSRSLFHQ 148 (763)
Q Consensus 96 ~~~fp~~~-----------~i~~~~----li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~ 148 (763)
.+....|. .+++.. +-++.+..|++.....+..+.+.|..+++ ++.+|+|+|+
T Consensus 256 ~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 256 LILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 33222221 233333 33356778998776667778888999997 8899998874
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=28.52 E-value=1.6e+02 Score=29.46 Aligned_cols=109 Identities=12% Similarity=-0.015 Sum_probs=65.3
Q ss_pred HHHHHHHHcC---CCh-HHHHHHHHHhc-----CC--CChHHHHHHHhhhcccccCCccChHHHHHHHHhcCCHhHHHHh
Q 039689 25 VGQKIAMKCK---GLP-LAAKTLGGLLR-----GK--DDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCF 93 (763)
Q Consensus 25 ~~~~i~~~c~---GlP-lal~~~g~~L~-----~~--~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~f 93 (763)
..+.++++++ |.| .|+.++..+.. +. -+.+.++.+++... ...+.-++..|+.+.+..+
T Consensus 227 ~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l 296 (387)
T 2v1u_A 227 VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVL 296 (387)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHH
Confidence 4566677776 998 44444444321 21 23566777766542 2246677899999888887
Q ss_pred hhhcccCCC-CccCHHHHHHHHH----HcCCcccCCCcccHHHHHHHHHHHHHHCCCcccc
Q 039689 94 AYCSLFPKD-HEFQKEQIILLWA----AEGFLHQENSKRKMEDLGREFVEELHSRSLFHQS 149 (763)
Q Consensus 94 l~~~~fp~~-~~i~~~~li~~w~----~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 149 (763)
+.++....| ..+...++.+... ..| ... .....+..+++.|...+++...
T Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 297 LSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 777743323 3455554444322 223 111 1235677899999999999874
No 174
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=25.56 E-value=30 Score=18.87 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=15.1
Q ss_pred HcCCChHHHHHHHHHhcCC
Q 039689 32 KCKGLPLAAKTLGGLLRGK 50 (763)
Q Consensus 32 ~c~GlPlal~~~g~~L~~~ 50 (763)
|-..+|||+.+.|+.+...
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 4457999999999988654
No 175
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.73 E-value=2e+02 Score=22.66 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=43.8
Q ss_pred ChHHHHh--hhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHH-hcCCCChHHHHHHHhhhc
Q 039689 1 MHWECYQ--KMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGL-LRGKDDPKDWENVLKTEV 64 (763)
Q Consensus 1 ~~~~lf~--~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~-L~~~~~~~~W~~~l~~~~ 64 (763)
|.|++=+ +..|+. +.+|.+.+..-|-+..++-.-.|+|+.++-+. .+.....+.|.-+++.+.
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 4555543 335654 45788889999999999999999999998766 333333455877777643
No 176
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.13 E-value=5.7e+02 Score=25.15 Aligned_cols=109 Identities=13% Similarity=-0.056 Sum_probs=62.5
Q ss_pred HHHHHHHHHcC---CChH-HHHHHHHHh--c---CCCChHHHHHHHhhhcccccCCccChHHHHHHHHhcCCHhHHHHhh
Q 039689 24 EVGQKIAMKCK---GLPL-AAKTLGGLL--R---GKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFA 94 (763)
Q Consensus 24 ~~~~~i~~~c~---GlPl-al~~~g~~L--~---~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~fl 94 (763)
+..+.++++|+ |-|- |+..+..+. + ..-+.+.++.+++... ...+..++..|+++.|..+.
T Consensus 222 ~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~ 291 (384)
T 2qby_B 222 EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALR 291 (384)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHH
Confidence 34566667776 8776 555544443 2 1234677887777642 23577788999988887776
Q ss_pred hhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccc
Q 039689 95 YCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQS 149 (763)
Q Consensus 95 ~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 149 (763)
-++....+.++. +......-..| ... ........+++.|.+++++...
T Consensus 292 al~~~~~~~~~~-~~~~~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 292 SLIESEDVMSAH-KMYTDLCNKFK-QKP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHTCCBHHHHH-HHHHHHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcccChHH-HHHHHHHHHcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 666511101111 12222222334 111 1224567889999999999874
No 177
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.89 E-value=2.7e+02 Score=23.32 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=44.8
Q ss_pred ChHHHHh--hhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHH-hcCCCChHHHHHHHhhhc
Q 039689 1 MHWECYQ--KMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGL-LRGKDDPKDWENVLKTEV 64 (763)
Q Consensus 1 ~~~~lf~--~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~-L~~~~~~~~W~~~l~~~~ 64 (763)
|.|++=+ +..|+. |..|.+.+..-|-+..++-.-.|+|+.++-+. -+.....+.|.-+++++.
T Consensus 68 D~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 68 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 133 (152)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHh
Confidence 5666654 346664 46788889999999999999999999998655 333333555877777643
Done!