BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039690
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWT 70
PC CSGS++ H C+ +W +E+G +CE+C+ YQ + P Q + ++ + E
Sbjct: 158 PCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAISTKNPLQWQAISLTVIEKVQ 217
Query: 71 VSGAPL 76
++ A L
Sbjct: 218 IAAAVL 223
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SSM4 PE=1 SV=1
Length = 1319
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEK--------GDVTCEICHQPYQ 46
PC C GS+KY H C+ W K DV C+ICH P Q
Sbjct: 55 PCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPIQ 98
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
PC C GS++Y H+ C+ +W +E+G TCE+C Y P Q + +I + E
Sbjct: 181 PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAIKMKQPCQWQSISITLVE 237
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
PC C GS++Y H+ C+ +W +E+G TCE+C Y P Q + +I + E
Sbjct: 183 PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAIKMKQPCQWQSISITLVE 239
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
PC C GS++Y H+ C+ +W +E+G TCE+C Y P Q + +I + E
Sbjct: 185 PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLVE 241
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
PC C GS++ H+ C+ RW +E+G +CE+C+ YQ + P Q + ++ + E
Sbjct: 125 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIE 181
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
PC C GS++ H+ C+ RW +E+G +CE+C+ YQ + P Q + ++ + E
Sbjct: 125 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIE 181
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWT 70
PC C GS+K H+ C+ +W +E+G +CE+C+ Y + P Q + ++ + E
Sbjct: 177 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ 236
Query: 71 VSGAPL 76
++ A L
Sbjct: 237 IAAAIL 242
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWT 70
PC C GS+K H+ C+ +W +E+G +CE+C+ Y + P Q + ++ + E
Sbjct: 178 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ 237
Query: 71 VSGAPL 76
V+ A L
Sbjct: 238 VAAAIL 243
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46
PC C+GS++Y H++C+ W CE+C ++
Sbjct: 24 PCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFE 59
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E S ++L PC C+G+L HR C++ W + CE+CH + P
Sbjct: 76 EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRN 135
Query: 54 PPPQSEDTTI 63
P PQ E T+
Sbjct: 136 PGPQHEKRTL 145
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP-------PPPQS 58
+NL PC C+G+L H+ C+++W + CE+CH + P P P++
Sbjct: 74 ENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKDPGPRT 133
Query: 59 EDTTI 63
E T+
Sbjct: 134 EKRTL 138
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E S ++L PC C+G+L HR C++ W + CE+CH + P
Sbjct: 76 EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRN 135
Query: 54 PPPQSEDTTI 63
P PQ E T+
Sbjct: 136 PGPQHEKRTL 145
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
++L PC CSG+L H+ C++RW + CE+CH +
Sbjct: 74 ESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEF 113
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP-------PPPQS 58
+NL PC C+G+L H+ C+++W + CE+CH + P P P++
Sbjct: 74 ENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKDPGPRT 133
Query: 59 EDTTI 63
E T+
Sbjct: 134 EKRTL 138
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E S ++L PC C+G+L HR C++ W + CE+CH + P
Sbjct: 76 EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRN 135
Query: 54 PPPQSEDTTI 63
P PQ E T+
Sbjct: 136 PGPQHEKRTL 145
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E S ++L PC C+G+L HR C++ W + CE+CH + P
Sbjct: 76 EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRN 135
Query: 54 PPPQSEDTTI 63
P PQ E T+
Sbjct: 136 PGPQHEKRTL 145
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGD--------VTCEICHQPYQ 46
PC C+GSL+Y H++C+++W K + TCE+C + Q
Sbjct: 570 PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKLQ 613
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E + ++L PC C+G+L HR C++ W + CE+CH + P
Sbjct: 74 EGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVERKPRPLVEWLRN 133
Query: 54 PPPQSEDTTI 63
P PQ E T+
Sbjct: 134 PGPQHEKRTL 143
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E + ++L PC C+G+L HR C++ W + CE+CH + P
Sbjct: 75 EGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVERKPRPLVEWLRN 134
Query: 54 PPPQSEDTTI 63
P PQ E T+
Sbjct: 135 PGPQHEKRTL 144
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGD--------VTCEICHQPYQ 46
PC C+GSL+Y H++C+++W K + TCE+C + Q
Sbjct: 571 PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKLQ 614
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5
PE=2 SV=1
Length = 281
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPY 45
E+D PC C GS K+ H+ C+QRW +EK V C C+ Y
Sbjct: 25 EDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPY 45
E+D PC C GS K+ H+ C+QRW +EK V C C+ Y
Sbjct: 22 EDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPY 45
E+D PC C GS K+ H+ C+QRW +EK V C C+ Y
Sbjct: 22 EDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPY 45
E+D PC C GS K+ H+ C+QRW +EK V C C+ Y
Sbjct: 22 EDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPY 45
E+D PC C GS K+ H+ C+QRW +EK V C C+ Y
Sbjct: 22 EDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPYQ 46
+ED PC C G K+ H+ C+QRW +EK G V+C C Y+
Sbjct: 20 KEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSCPQCGTEYR 71
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5
PE=2 SV=1
Length = 283
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPY 45
E+D PC C GS K+ H+ C+QRW +EK V C C+ Y
Sbjct: 25 EDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 12 CSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46
C+C G L+Y H +C++ W + G+ C+ C PY+
Sbjct: 147 CNCYGDLQYCHEECLKTWISMSGEKKCKFCQTPYK 181
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP-------PPPQS 58
+ L PC C+G+L H+ C+++W + CE+CH + P P P++
Sbjct: 77 EGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEFTIERRPRPLTEWLRDPGPRN 136
Query: 59 EDTTI 63
E T+
Sbjct: 137 EKRTL 141
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQ--PYQPGYTAPPP 54
K L PC C+GS+K+ H++C+ +W CE+C + P Y+ P
Sbjct: 20 KPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMP 70
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQ--PYQPGYTAPPP 54
K L PC C+GS+K+ H++C+ +W CE+C + P Y+ P
Sbjct: 20 KPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMP 70
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQ--PYQPGYTAPPP 54
K L PC C+GS+K+ H++C+ +W CE+C + P Y+ P
Sbjct: 20 KPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMP 70
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
E + + L PC C+G+L H+ C+++W + CE+CH +
Sbjct: 69 EGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP------- 53
E + + L PC C+G+L H+ C+++W + CE+CH + P
Sbjct: 69 EGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVTEWLKD 128
Query: 54 PPPQSEDTTI 63
P P++E T+
Sbjct: 129 PGPRNEKRTL 138
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 40.0 bits (92), Expect = 0.014, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGD--------VTCEICHQ 43
PC C+GSL+Y H+ C+++W K + TCE+C +
Sbjct: 569 PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKE 609
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGD--------VTCEICHQ 43
PC C+GSL+Y H+ C+++W K + TCE+C +
Sbjct: 569 PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKE 609
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
PC C+G+L H+ C+++W + CE+CH +
Sbjct: 79 PCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
E D L PC C+GSL + H+ C+Q+W CE+C +
Sbjct: 82 EGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 126
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
E D L PC C+GSL + H+ C+Q+W CE+C +
Sbjct: 84 EGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEF 128
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEK----GDV----TCEICHQ 43
PC C GSL++ H++C+++W K D+ TCE+C Q
Sbjct: 658 PCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
E D L PC C+GSL + H+ C+Q+W CE+C +
Sbjct: 86 EGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8
PE=2 SV=2
Length = 264
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEIC 41
E D L PC C+GSL + H+ C+Q+W CE+C
Sbjct: 59 EGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC 99
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis
GN=march8 PE=2 SV=1
Length = 264
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEIC 41
E D L PC C+GSL + H+ C+Q+W CE+C
Sbjct: 59 EGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC 99
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 11 PCSCSGSLKYAHRKCVQRWCNEK-------GDV-TCEICHQ 43
PC C GSL++ H++C+++W K G V TCE+C Q
Sbjct: 676 PCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
E D L PC C+G+L++ H+ C+ +W CE+C +
Sbjct: 86 EGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
E D L PC C+G+L++ H+ C+ +W CE+C +
Sbjct: 86 EGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q6TV02|LAP_YMTV5 E3 ubiquitin-protein ligase LAP OS=Yaba monkey tumor virus
(strain VR587) GN=LAP PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 12 CSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46
C CS K H KC+Q W N V C++C Y
Sbjct: 19 CICSEEYKIVHLKCMQSWINYSKKVECDLCKNKYN 53
>sp|Q04683|CXCR5_MOUSE C-X-C chemokine receptor type 5 OS=Mus musculus GN=Cxcr5 PE=1 SV=2
Length = 374
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 132 TNSDDGEDDASTFF-SLFLLRAAGFLLPCYIMAWA-VSIL------QRRRQRQEA--AAL 181
T S + E + +F S FL GFLLP +M W V ++ QRR QRQ+A A+
Sbjct: 205 TFSQENEAETRAWFTSRFLYHIGGFLLPMLVMGWCYVGVVHRLLQAQRRPQRQKAVRVAI 264
Query: 182 AATEVAFM 189
T + F+
Sbjct: 265 LVTSIFFL 272
>sp|P34997|CXCR5_RAT C-X-C chemokine receptor type 5 OS=Rattus norvegicus GN=Cxcr5 PE=2
SV=1
Length = 374
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 138 EDDAST---FFSLFLLRAAGFLLPCYIMAWA-VSIL------QRRRQRQEAAALA 182
E++A T F S FL GFLLP +MAW V ++ QRR QRQ+A +A
Sbjct: 209 ENEAETRAWFASRFLYHTGGFLLPMLVMAWCYVGVVHRLLQAQRRPQRQKAVRVA 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,653,321
Number of Sequences: 539616
Number of extensions: 3237617
Number of successful extensions: 12183
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 12107
Number of HSP's gapped (non-prelim): 95
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)