Query 039690
Match_columns 216
No_of_seqs 181 out of 674
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.6 5E-16 1.7E-20 109.1 3.7 44 4-47 16-59 (60)
2 2d8s_A Cellular modulator of i 99.5 2.4E-14 8.1E-19 105.6 3.2 53 3-55 26-78 (80)
3 2ct0_A Non-SMC element 1 homol 96.5 0.0011 3.9E-08 48.0 2.4 31 20-50 37-67 (74)
4 1v87_A Deltex protein 2; ring- 95.8 0.0065 2.2E-07 45.2 3.5 32 19-50 63-97 (114)
5 2ect_A Ring finger protein 126 94.9 0.0056 1.9E-07 42.6 0.5 32 19-52 38-69 (78)
6 2kiz_A E3 ubiquitin-protein li 94.9 0.016 5.4E-07 39.3 2.8 28 19-48 37-64 (69)
7 2ep4_A Ring finger protein 24; 94.5 0.029 1E-06 38.4 3.4 27 19-47 38-64 (74)
8 2ecm_A Ring finger and CHY zin 94.4 0.011 3.8E-07 38.2 1.0 33 7-46 22-54 (55)
9 2l0b_A E3 ubiquitin-protein li 94.4 0.012 4.2E-07 42.6 1.3 27 19-47 63-89 (91)
10 2ecl_A Ring-box protein 2; RNF 94.2 0.013 4.5E-07 41.8 1.1 27 19-47 50-76 (81)
11 1x4j_A Ring finger protein 38; 93.6 0.015 5E-07 40.3 0.4 27 19-47 46-72 (75)
12 1iym_A EL5; ring-H2 finger, ub 93.2 0.016 5.5E-07 37.5 0.0 26 19-46 29-54 (55)
13 2ct2_A Tripartite motif protei 93.1 0.049 1.7E-06 38.1 2.5 36 7-47 32-68 (88)
14 2ea6_A Ring finger protein 4; 92.5 0.071 2.4E-06 35.5 2.5 27 19-47 42-68 (69)
15 3ng2_A RNF4, snurf, ring finge 91.8 0.12 4E-06 34.8 3.0 26 20-47 38-63 (71)
16 3dpl_R Ring-box protein 1; ubi 91.7 0.063 2.2E-06 40.7 1.7 27 19-47 75-101 (106)
17 2xeu_A Ring finger protein 4; 91.5 0.11 3.8E-06 34.0 2.5 27 19-47 30-56 (64)
18 2yur_A Retinoblastoma-binding 91.5 0.063 2.2E-06 37.1 1.3 27 20-46 37-63 (74)
19 2ecw_A Tripartite motif-contai 91.3 0.13 4.3E-06 35.5 2.8 28 20-47 40-71 (85)
20 2d8t_A Dactylidin, ring finger 91.0 0.033 1.1E-06 38.2 -0.6 29 19-49 35-63 (71)
21 2ecy_A TNF receptor-associated 90.6 0.13 4.3E-06 34.6 2.1 27 20-47 36-62 (66)
22 2djb_A Polycomb group ring fin 90.2 0.27 9.3E-06 33.5 3.6 27 20-48 37-63 (72)
23 1chc_A Equine herpes virus-1 r 88.9 0.26 9E-06 32.9 2.7 33 8-47 20-52 (68)
24 4a0k_B E3 ubiquitin-protein li 88.8 0.08 2.7E-06 41.2 0.0 27 19-47 86-112 (117)
25 2ecv_A Tripartite motif-contai 88.6 0.4 1.4E-05 32.8 3.6 28 20-47 40-71 (85)
26 3ztg_A E3 ubiquitin-protein li 88.5 0.24 8.3E-06 35.1 2.4 26 21-46 36-61 (92)
27 3lrq_A E3 ubiquitin-protein li 88.1 0.27 9.2E-06 36.0 2.5 27 20-47 44-70 (100)
28 2ysl_A Tripartite motif-contai 87.9 0.16 5.3E-06 34.4 1.0 28 20-47 41-69 (73)
29 2csy_A Zinc finger protein 183 87.8 0.27 9.1E-06 34.2 2.2 25 20-46 36-60 (81)
30 2ecn_A Ring finger protein 141 86.8 0.12 4.3E-06 34.8 0.0 33 8-47 28-60 (70)
31 1t1h_A Gspef-atpub14, armadill 86.6 0.35 1.2E-05 33.2 2.3 28 19-47 28-55 (78)
32 1jm7_A BRCA1, breast cancer ty 85.6 0.48 1.6E-05 34.5 2.7 37 6-47 33-70 (112)
33 1g25_A CDK-activating kinase a 85.5 0.48 1.6E-05 31.5 2.4 27 20-47 29-55 (65)
34 4ap4_A E3 ubiquitin ligase RNF 84.1 0.54 1.9E-05 34.7 2.4 27 19-47 99-125 (133)
35 4ap4_A E3 ubiquitin ligase RNF 83.9 0.45 1.5E-05 35.1 1.9 26 20-47 35-60 (133)
36 2egp_A Tripartite motif-contai 83.3 0.14 4.7E-06 35.1 -1.1 37 6-47 24-65 (79)
37 4ayc_A E3 ubiquitin-protein li 82.8 0.33 1.1E-05 37.4 0.8 34 6-46 65-98 (138)
38 3fl2_A E3 ubiquitin-protein li 82.6 0.94 3.2E-05 34.0 3.2 27 20-47 73-99 (124)
39 2ecj_A Tripartite motif-contai 82.1 0.55 1.9E-05 30.1 1.5 31 6-41 27-58 (58)
40 2ckl_B Ubiquitin ligase protei 81.7 0.57 2E-05 36.9 1.8 27 19-46 75-101 (165)
41 1e4u_A Transcriptional repress 80.3 0.75 2.6E-05 32.7 1.8 37 7-47 26-62 (78)
42 2ysj_A Tripartite motif-contai 79.4 0.81 2.8E-05 30.1 1.6 22 20-41 41-63 (63)
43 2y43_A E3 ubiquitin-protein li 78.7 0.97 3.3E-05 32.5 2.0 27 19-47 43-69 (99)
44 1z6u_A NP95-like ring finger p 78.5 1 3.5E-05 35.6 2.3 35 7-47 91-125 (150)
45 3hct_A TNF receptor-associated 76.7 1.4 4.7E-05 32.9 2.4 27 20-47 39-65 (118)
46 2ckl_A Polycomb group ring fin 76.3 1 3.4E-05 33.0 1.5 26 20-47 37-62 (108)
47 1rmd_A RAG1; V(D)J recombinati 71.7 2.6 8.9E-05 31.0 2.8 27 20-47 44-70 (116)
48 2c2l_A CHIP, carboxy terminus 63.8 2.8 9.6E-05 34.6 1.8 25 22-47 231-255 (281)
49 2kr4_A Ubiquitin conjugation f 62.5 5.2 0.00018 28.4 2.8 25 21-47 36-60 (85)
50 1wgm_A Ubiquitin conjugation f 56.7 4.7 0.00016 29.6 1.8 25 21-47 45-69 (98)
51 2f42_A STIP1 homology and U-bo 56.4 6.8 0.00023 32.3 2.8 26 21-47 128-153 (179)
52 3l11_A E3 ubiquitin-protein li 55.2 1.6 5.4E-05 32.2 -1.1 36 6-47 27-62 (115)
53 2kre_A Ubiquitin conjugation f 53.9 6 0.0002 29.1 1.9 25 21-47 51-75 (100)
54 2bay_A PRE-mRNA splicing facto 53.5 8.1 0.00028 26.0 2.4 25 21-47 26-50 (61)
55 3hcs_A TNF receptor-associated 50.2 9.9 0.00034 29.7 2.8 27 20-47 39-65 (170)
56 1e8j_A Rubredoxin; iron-sulfur 45.4 20 0.00068 23.9 3.3 18 35-52 3-20 (52)
57 1jm7_B BARD1, BRCA1-associated 40.0 4.5 0.00015 29.9 -0.7 23 20-46 44-66 (117)
58 2vje_A E3 ubiquitin-protein li 38.0 22 0.00074 23.7 2.6 23 23-47 35-57 (64)
59 3htk_C E3 SUMO-protein ligase 37.9 11 0.00037 33.3 1.3 27 21-47 204-232 (267)
60 2yu4_A E3 SUMO-protein ligase 36.9 24 0.00083 25.1 2.9 24 21-44 30-59 (94)
61 4rxn_A Rubredoxin; electron tr 35.6 16 0.00054 24.8 1.6 18 35-52 3-20 (54)
62 1znf_A 31ST zinc finger from X 35.4 12 0.00042 18.8 0.8 12 36-47 2-13 (27)
63 2vje_B MDM4 protein; proto-onc 35.0 23 0.0008 23.4 2.4 24 22-47 33-56 (63)
64 2m0f_A Zinc finger and BTB dom 34.9 12 0.00041 18.9 0.7 13 35-47 2-14 (29)
65 1dx8_A Rubredoxin; electron tr 34.7 31 0.0011 24.3 3.1 36 34-70 6-42 (70)
66 1ard_A Yeast transcription fac 34.2 16 0.00055 18.5 1.2 12 36-47 3-14 (29)
67 3knv_A TNF receptor-associated 33.7 8.7 0.0003 29.8 -0.0 24 21-45 53-76 (141)
68 2lvu_A Zinc finger and BTB dom 38.7 9.4 0.00032 19.3 0.0 12 36-47 3-14 (26)
69 2kvh_A Zinc finger and BTB dom 32.3 14 0.00049 18.8 0.7 13 35-47 3-15 (27)
70 2v3b_B Rubredoxin 2, rubredoxi 31.4 24 0.00081 23.8 1.9 18 35-52 3-20 (55)
71 2kn9_A Rubredoxin; metalloprot 30.0 23 0.00078 25.9 1.7 19 34-52 26-44 (81)
72 2odx_A Cytochrome C oxidase po 29.1 7.3 0.00025 28.4 -1.1 24 30-53 51-74 (80)
73 2kvf_A Zinc finger and BTB dom 28.7 17 0.00059 18.4 0.7 13 35-47 3-15 (28)
74 1yk4_A Rubredoxin, RD; electro 28.3 20 0.00067 23.9 1.0 18 35-52 2-19 (52)
75 1s24_A Rubredoxin 2; electron 28.2 34 0.0012 25.3 2.4 36 34-70 34-70 (87)
76 2m0e_A Zinc finger and BTB dom 28.0 23 0.00078 17.7 1.1 12 36-47 3-14 (29)
77 1klr_A Zinc finger Y-chromosom 28.0 23 0.00079 17.8 1.1 12 36-47 3-14 (30)
78 1paa_A Yeast transcription fac 27.8 24 0.00081 18.0 1.2 12 36-47 3-14 (30)
79 1p7a_A BF3, BKLF, kruppel-like 27.7 22 0.00076 19.4 1.1 14 34-47 10-23 (37)
80 1rik_A E6APC1 peptide; E6-bind 27.2 17 0.00058 18.5 0.5 12 36-47 3-14 (29)
81 2elr_A Zinc finger protein 406 26.7 24 0.00081 19.1 1.1 14 34-47 8-21 (36)
82 2kvg_A Zinc finger and BTB dom 26.5 15 0.00051 18.9 0.1 13 35-47 3-15 (27)
83 2m0d_A Zinc finger and BTB dom 26.2 21 0.00071 18.0 0.7 13 35-47 3-15 (30)
84 2elx_A Zinc finger protein 406 26.0 18 0.00062 19.4 0.5 14 34-47 6-19 (35)
85 2lvt_A Zinc finger and BTB dom 31.6 15 0.0005 18.9 0.0 12 36-47 3-14 (29)
86 1wii_A Hypothetical UPF0222 pr 24.8 9.1 0.00031 28.2 -1.3 30 33-69 45-74 (85)
87 1srk_A Zinc finger protein ZFP 24.7 22 0.00076 19.1 0.7 14 34-47 6-19 (35)
88 4ic3_A E3 ubiquitin-protein li 24.6 18 0.00061 24.6 0.3 31 6-47 36-67 (74)
89 2elt_A Zinc finger protein 406 23.8 21 0.00072 19.3 0.5 14 34-47 8-21 (36)
90 2lvr_A Zinc finger and BTB dom 29.4 17 0.00057 18.6 0.0 12 36-47 4-15 (30)
91 2elv_A Zinc finger protein 406 22.6 23 0.00078 19.3 0.5 14 34-47 8-21 (36)
92 1rim_A E6APC2 peptide; E6-bind 22.1 28 0.00095 18.9 0.8 12 36-47 3-14 (33)
93 2kfq_A FP1; protein, de novo p 21.9 22 0.00074 19.2 0.3 13 36-48 3-15 (32)
94 1p1p_A AA-conotoxin PIVA; neur 21.5 29 0.00098 20.2 0.7 16 6-21 8-23 (26)
95 2elq_A Zinc finger protein 406 21.1 26 0.00088 19.0 0.5 14 34-47 8-21 (36)
96 2elo_A Zinc finger protein 406 21.1 28 0.00095 19.0 0.6 14 34-47 8-21 (37)
97 2elp_A Zinc finger protein 406 20.9 26 0.0009 19.2 0.5 14 34-47 8-21 (37)
98 2jwa_A Receptor tyrosine-prote 20.6 62 0.0021 21.1 2.3 31 145-176 11-41 (44)
99 2eos_A B-cell lymphoma 6 prote 20.5 39 0.0013 19.1 1.2 14 34-47 10-23 (42)
100 2els_A Zinc finger protein 406 20.5 31 0.001 18.7 0.7 14 34-47 8-21 (36)
101 2elm_A Zinc finger protein 406 20.4 26 0.00089 19.5 0.4 13 35-47 9-21 (37)
102 2yte_A Zinc finger protein 473 20.4 38 0.0013 19.0 1.1 14 34-47 9-22 (42)
103 2eon_A ZFP-95, zinc finger pro 20.1 38 0.0013 19.6 1.1 14 34-47 11-24 (46)
104 2en7_A Zinc finger protein 268 20.0 36 0.0012 19.3 1.0 14 34-47 11-24 (44)
105 1njq_A Superman protein; zinc- 20.0 27 0.00094 19.5 0.4 13 35-47 6-18 (39)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.59 E-value=5e-16 Score=109.07 Aligned_cols=44 Identities=27% Similarity=0.697 Sum_probs=41.1
Q ss_pred cCCCccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 4 SIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 4 ~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.+++++.||+|+||+||+|+.||++|++.|++.+||+|+++|++
T Consensus 16 ~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 16 LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45568999999999999999999999999999999999999986
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-14 Score=105.60 Aligned_cols=53 Identities=30% Similarity=0.764 Sum_probs=46.8
Q ss_pred ccCCCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccccccCCCCCC
Q 039690 3 DSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPP 55 (216)
Q Consensus 3 d~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p~p~ 55 (216)
+++++++.||+|+|+++++|..||++|++.+++.+|++|++.|.+....+||.
T Consensus 26 ~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~~ 78 (80)
T 2d8s_A 26 DDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPS 78 (80)
T ss_dssp CSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCCC
T ss_pred cCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCCC
Confidence 45678899999999999999999999999999999999999999877655443
No 3
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=47.96 Aligned_cols=31 Identities=16% Similarity=0.485 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCCccccccCcccccccC
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQPGYT 50 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~~y~ 50 (216)
-.|..|+.+|++.+++.+|.+|++.+...-.
T Consensus 37 ~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 37 RMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp EECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred hhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 3699999999998888999999999886543
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=95.80 E-value=0.0065 Score=45.20 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHH---cCCccccccCcccccccC
Q 039690 19 KYAHRKCVQRWCNE---KGDVTCEICHQPYQPGYT 50 (216)
Q Consensus 19 kyvH~~CL~~W~~~---k~~~~CEICk~~y~~~y~ 50 (216)
...|..||.+|++. +....|.+|+..|.....
T Consensus 63 H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 63 HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 46899999999975 457899999999976543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.91 E-value=0.0056 Score=42.56 Aligned_cols=32 Identities=22% Similarity=0.624 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHcCCccccccCcccccccCCC
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAP 52 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p 52 (216)
+..|..|+.+|++.+ ..|.+|+.++...-..+
T Consensus 38 H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 38 HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp CEEETTTTHHHHTTT--CSCTTTCCCCCCSCSCC
T ss_pred CeecHHHHHHHHHcC--CcCcCcCCccCCcccCC
Confidence 457999999999654 68999999987654433
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.90 E-value=0.016 Score=39.29 Aligned_cols=28 Identities=25% Similarity=0.669 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHcCCccccccCcccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPG 48 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~ 48 (216)
+..|..|+.+|++.+. .|.+|+..+...
T Consensus 37 H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 37 HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 3479999999998754 699999987653
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.51 E-value=0.029 Score=38.44 Aligned_cols=27 Identities=30% Similarity=0.834 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
+..|..|+.+|++.+. .|.+|++.+..
T Consensus 38 H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 38 HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 3579999999998754 89999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.41 E-value=0.011 Score=38.15 Aligned_cols=33 Identities=27% Similarity=0.701 Sum_probs=26.1
Q ss_pred CccccccccCchhhHHHHHHHHHHHHcCCccccccCcccc
Q 039690 7 NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 7 ~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
....||. ...|..|+.+|++.+ ..|.+|+..+.
T Consensus 22 ~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp EEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred eEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4566763 368999999999876 88999998764
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=94.39 E-value=0.012 Score=42.62 Aligned_cols=27 Identities=33% Similarity=0.926 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...|..|+.+|++. +..|.+|+..+..
T Consensus 63 H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 63 HYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp EEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred ChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 46899999999964 4589999988754
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.23 E-value=0.013 Score=41.76 Aligned_cols=27 Identities=22% Similarity=0.684 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...|..|+.+|++.+ .+|++|++.+..
T Consensus 50 H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 468999999999765 499999999864
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.63 E-value=0.015 Score=40.28 Aligned_cols=27 Identities=37% Similarity=0.844 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
+..|..|+.+|++.+ ..|.+|+..+..
T Consensus 46 H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 46 HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 458999999999764 589999988764
No 12
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=93.22 E-value=0.016 Score=37.45 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHcCCccccccCcccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
...|..|+.+|++. +..|.+|+.++.
T Consensus 29 H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 29 HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 35899999999965 568999998764
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.14 E-value=0.049 Score=38.12 Aligned_cols=36 Identities=17% Similarity=0.445 Sum_probs=28.1
Q ss_pred CccccccccCchhhHHHHHHHHHHHHc-CCccccccCccccc
Q 039690 7 NLEVPCSCSGSLKYAHRKCVQRWCNEK-GDVTCEICHQPYQP 47 (216)
Q Consensus 7 ~li~PC~C~GSlkyvH~~CL~~W~~~k-~~~~CEICk~~y~~ 47 (216)
+...||. +..|..|+.+|++.+ +...|.+|+..+..
T Consensus 32 ~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 32 PKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp EEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred eEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4455652 457999999999876 57899999998765
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.46 E-value=0.071 Score=35.49 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...|..|+.+|++. ...|.+|+..+..
T Consensus 42 H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 42 HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 35799999999976 5689999998753
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=91.85 E-value=0.12 Score=34.80 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++.+ ..|.+|+..+..
T Consensus 38 ~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 38 VFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp EEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred hHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 47999999999765 599999998764
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=91.74 E-value=0.063 Score=40.74 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
+.-|..|+.+|+.. ..+|++|+..|..
T Consensus 75 H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 75 HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45899999999975 5789999999864
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=91.51 E-value=0.11 Score=34.00 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...|..|+.+|++. +..|.+|+..+..
T Consensus 30 H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 30 HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 34799999999987 5699999998764
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=91.48 E-value=0.063 Score=37.14 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHcCCccccccCcccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
..|..|+.+|++.++...|.+|+.++.
T Consensus 37 ~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 37 SYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp EECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred HHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 467899999999888889999999743
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.32 E-value=0.13 Score=35.45 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHc----CCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEK----GDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k----~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++.+ +...|.+|+..+..
T Consensus 40 ~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 40 SFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 47899999999884 48999999998764
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.97 E-value=0.033 Score=38.17 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPGY 49 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~y 49 (216)
+..|..|+.+|+..+ ..|.+|+..+....
T Consensus 35 H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 35 HVFCYLCVKGASWLG--KRCALCRQEIPEDF 63 (71)
T ss_dssp EEEEHHHHHHCTTCS--SBCSSSCCBCCHHH
T ss_pred CHHHHHHHHHHHHCC--CcCcCcCchhCHhh
Confidence 347899999999654 79999999987643
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.61 E-value=0.13 Score=34.58 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++ ++...|.+|+..+..
T Consensus 36 ~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 36 RFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred HHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 468999999997 567789999998764
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.19 E-value=0.27 Score=33.50 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHcCCccccccCcccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQPG 48 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~~ 48 (216)
..|..|+.+|++. ...|.+|+..+...
T Consensus 37 ~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 37 TFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp EECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred HHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 4689999999976 57999999998753
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=88.87 E-value=0.26 Score=32.87 Aligned_cols=33 Identities=27% Similarity=0.826 Sum_probs=25.2
Q ss_pred ccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 8 LEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 8 li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...||. +..|..|+.+|++.+ ..|.+|+..+..
T Consensus 20 ~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 20 MALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp EETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred EecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 455653 347899999999754 689999998764
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=88.81 E-value=0.08 Score=41.18 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...|..|+.+|++. ...|++|+..|+.
T Consensus 86 H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 86 HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------
T ss_pred ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 45899999999977 4689999999864
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.64 E-value=0.4 Score=32.82 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHH----cCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNE----KGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~----k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++. ++...|.+|+..+..
T Consensus 40 ~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 40 SFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4689999999987 468899999999875
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=88.48 E-value=0.24 Score=35.09 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCccccccCcccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
.+..|+.+|+..++...|.+|+..+.
T Consensus 36 fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 36 YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 56899999999888899999998863
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=88.15 E-value=0.27 Score=35.96 Aligned_cols=27 Identities=30% Similarity=0.778 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++.++ ..|.+|+..+..
T Consensus 44 ~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 44 LCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp EEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred hhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 468999999998765 799999999853
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.88 E-value=0.16 Score=34.41 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHH-cCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNE-KGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~-k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++. ++...|.+|+..+..
T Consensus 41 ~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 41 NFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp EEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4789999999974 467899999998764
No 29
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.77 E-value=0.27 Score=34.23 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHcCCccccccCcccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
..|..|+.+|++. ...|.+|+..+.
T Consensus 36 ~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 36 YFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp EEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred HhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 4589999999965 668999999875
No 30
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.84 E-value=0.12 Score=34.81 Aligned_cols=33 Identities=27% Similarity=0.800 Sum_probs=25.9
Q ss_pred ccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 8 LEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 8 li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...||. +..|..|+.+|++ ....|.+|+..+..
T Consensus 28 ~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 28 LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 455653 3479999999997 67899999998764
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.60 E-value=0.35 Score=33.19 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
+..++.|+.+|++ ++..+|.+|+..+..
T Consensus 28 H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 28 QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 3467999999996 357899999998764
No 32
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.61 E-value=0.48 Score=34.46 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=27.3
Q ss_pred CCccccccccCchhhHHHHHHHHHHHHc-CCccccccCccccc
Q 039690 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEK-GDVTCEICHQPYQP 47 (216)
Q Consensus 6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k-~~~~CEICk~~y~~ 47 (216)
++...||. +..|..|+.+|+..+ +...|.+|+..+..
T Consensus 33 ~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 33 EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34455653 346889999999864 56799999988764
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.54 E-value=0.48 Score=31.51 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..+..|+.+|+.. +...|.+|+..+..
T Consensus 29 ~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 29 TLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred HhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 4689999999864 56789999998764
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=84.06 E-value=0.54 Score=34.69 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
...|..|+.+|++.+ ..|.+|+..+..
T Consensus 99 H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 99 HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 458999999999765 499999998864
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.91 E-value=0.45 Score=35.12 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++.+ ..|.+|+..+..
T Consensus 35 ~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 35 VFCSQCLRDSLKNA--NTCPTCRKKINH 60 (133)
T ss_dssp EEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred hhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence 57999999999754 499999999864
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=83.33 E-value=0.14 Score=35.14 Aligned_cols=37 Identities=24% Similarity=0.577 Sum_probs=27.6
Q ss_pred CCccccccccCchhhHHHHHHHHHHHHc-----CCccccccCccccc
Q 039690 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEK-----GDVTCEICHQPYQP 47 (216)
Q Consensus 6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k-----~~~~CEICk~~y~~ 47 (216)
++...||. +..+..|+.+|++.+ +...|.+|+..+..
T Consensus 24 ~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 24 EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34455653 346899999999863 47899999999864
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=82.78 E-value=0.33 Score=37.40 Aligned_cols=34 Identities=18% Similarity=0.699 Sum_probs=25.3
Q ss_pred CCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccc
Q 039690 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
++...||. +..|..|+.+|+.. ...|++|+..+.
T Consensus 65 ~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 65 EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIK 98 (138)
T ss_dssp SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCC
T ss_pred CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 34456653 35799999999964 467999998864
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.58 E-value=0.94 Score=33.95 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|+. ++...|.+|+..+..
T Consensus 73 ~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 73 NVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp EEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 368999999998 456799999998864
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.11 E-value=0.55 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.845 Sum_probs=22.2
Q ss_pred CCccccccccCchhhHHHHHHHHHHHH-cCCcccccc
Q 039690 6 KNLEVPCSCSGSLKYAHRKCVQRWCNE-KGDVTCEIC 41 (216)
Q Consensus 6 ~~li~PC~C~GSlkyvH~~CL~~W~~~-k~~~~CEIC 41 (216)
++...||. +..|..|+.+|++. ++...|.+|
T Consensus 27 ~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 27 EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 34455553 34689999999875 567889887
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=81.69 E-value=0.57 Score=36.89 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHcCCccccccCcccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
+..|..|+.+|+.. +...|.+|+..+.
T Consensus 75 H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 75 HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 45789999999974 4688999999875
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=80.27 E-value=0.75 Score=32.73 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=28.2
Q ss_pred CccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 7 NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 7 ~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
....||.|. +..++.|+.+|.+. +...|.+|+..|..
T Consensus 26 ~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 26 INFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp TTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 345678783 34789999998753 67899999999875
No 42
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.36 E-value=0.81 Score=30.10 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHc-CCcccccc
Q 039690 20 YAHRKCVQRWCNEK-GDVTCEIC 41 (216)
Q Consensus 20 yvH~~CL~~W~~~k-~~~~CEIC 41 (216)
..|..|+.+|++.+ +...|.+|
T Consensus 41 ~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 41 NFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp EECHHHHHHHHHHCSSCCCCSCC
T ss_pred cchHHHHHHHHHcCCCCCcCcCC
Confidence 46899999999854 57789988
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=78.72 E-value=0.97 Score=32.47 Aligned_cols=27 Identities=11% Similarity=0.379 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
+..|..|+.+|++. ...|.+|+..+..
T Consensus 43 H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 43 HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 34689999999974 4699999998764
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=78.45 E-value=1 Score=35.56 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=26.0
Q ss_pred CccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 7 NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 7 ~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
+...||. ...+..|+.+|+.. +...|.+|+..+..
T Consensus 91 pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 91 PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 4445553 24679999999974 55689999998765
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=76.68 E-value=1.4 Score=32.88 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..+..|+.+|++.++. .|.+|+..+..
T Consensus 39 ~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 39 RFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp EEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred hhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 4679999999987654 89999998764
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=76.34 E-value=1 Score=32.99 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|..|+.+|++.+ ..|.+|+..+..
T Consensus 37 ~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 37 SFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp EEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred hhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45899999999754 899999998764
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=71.68 E-value=2.6 Score=31.02 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..+..|+.+|++.+ ...|++|+..+..
T Consensus 44 ~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 44 LFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp EEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 46899999999874 4589999998765
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=63.84 E-value=2.8 Score=34.56 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCccccccCccccc
Q 039690 22 HRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 22 H~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
-+.|+.+|+..++.. |++|+.++..
T Consensus 231 ~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 231 DRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp ETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 378999999876554 9999988753
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=62.49 E-value=5.2 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCccccccCccccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.-+.|+.+|+.. ..+|.+|+..+..
T Consensus 36 f~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 36 MDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp EEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred ECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 458999999985 5789999988753
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=56.73 E-value=4.7 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCccccccCccccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.-+.|+.+|+.. ..+|.+|+.++..
T Consensus 45 f~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 45 VDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp EEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred ECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 348999999975 5689999988763
No 51
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=56.39 E-value=6.8 Score=32.29 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCccccccCccccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.=+.|+.+|+...+. +|++|+.++..
T Consensus 128 fer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 128 YDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp EEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred ECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 448999999987665 79999988764
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=55.18 E-value=1.6 Score=32.19 Aligned_cols=36 Identities=17% Similarity=0.568 Sum_probs=26.6
Q ss_pred CCccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690 6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
++...||. +..+..|+.+|++. +...|.+|+..+..
T Consensus 27 ~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 27 EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34455653 34789999999963 46899999999864
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=53.91 E-value=6 Score=29.11 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCccccccCccccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.-+.|+.+|+.. ..+|++|+.++..
T Consensus 51 f~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 51 MDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp EEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred EchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 458999999973 6799999988753
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=53.53 E-value=8.1 Score=26.00 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCccccccCccccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.=+.|+.+|++..+ +|.+++++...
T Consensus 26 yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 26 FEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp EEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 45889999998765 49999988753
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=50.22 E-value=9.9 Score=29.69 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHcCCccccccCccccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
.....|+.+|++.++. +|.+|+..+..
T Consensus 39 ~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 39 RFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp EEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred HHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 3578999999987654 99999988765
No 56
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=45.44 E-value=20 Score=23.90 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=14.1
Q ss_pred CccccccCcccccccCCC
Q 039690 35 DVTCEICHQPYQPGYTAP 52 (216)
Q Consensus 35 ~~~CEICk~~y~~~y~~p 52 (216)
...|.+|++.|......|
T Consensus 3 ~y~C~~CGyvYd~~~Gdp 20 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDP 20 (52)
T ss_dssp CEECSSSCCCCCTTTCCT
T ss_pred cEEeCCCCeEEcCCcCCc
Confidence 468999999998766544
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.02 E-value=4.5 Score=29.93 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHcCCccccccCcccc
Q 039690 20 YAHRKCVQRWCNEKGDVTCEICHQPYQ 46 (216)
Q Consensus 20 yvH~~CL~~W~~~k~~~~CEICk~~y~ 46 (216)
..+..|+.+|++ ..|.+|+..+.
T Consensus 44 ~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 44 IFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp CBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred HHHHHHHHHHhc----CCCcCCCCcCc
Confidence 456889999987 78999999874
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=37.95 E-value=22 Score=23.66 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCccccccCccccc
Q 039690 23 RKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 23 ~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
..|+.+|.+. +..|.+|+..+..
T Consensus 35 ~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 35 FTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp HHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred HHHHHHHHHc--CCcCCCcCcchhc
Confidence 6899999864 4589999998753
No 59
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.94 E-value=11 Score=33.32 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCccccc--cCccccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEI--CHQPYQP 47 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEI--Ck~~y~~ 47 (216)
-=+.|+.+|+..++...|++ |+..+..
T Consensus 204 FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 204 FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34789999998878899999 9997753
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.93 E-value=24 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHc----CCccccc--cCcc
Q 039690 21 AHRKCVQRWCNEK----GDVTCEI--CHQP 44 (216)
Q Consensus 21 vH~~CL~~W~~~k----~~~~CEI--Ck~~ 44 (216)
.-+.|+.+|+... +..+|.+ |...
T Consensus 30 f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 30 YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999999864 4789999 8866
No 61
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.56 E-value=16 Score=24.75 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=13.9
Q ss_pred CccccccCcccccccCCC
Q 039690 35 DVTCEICHQPYQPGYTAP 52 (216)
Q Consensus 35 ~~~CEICk~~y~~~y~~p 52 (216)
...|.+|++.|......|
T Consensus 3 ~y~C~vCGyvYd~~~Gdp 20 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDP 20 (54)
T ss_dssp CEEETTTCCEECTTTCBG
T ss_pred ceECCCCCeEECCCcCCc
Confidence 468999999998765543
No 62
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.45 E-value=12 Score=18.78 Aligned_cols=12 Identities=17% Similarity=0.816 Sum_probs=9.5
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998864
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=35.03 E-value=23 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCccccccCccccc
Q 039690 22 HRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 22 H~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
=..|+.+|.+. +..|.+|+.....
T Consensus 33 C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 33 CFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp CHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred HHHHHHHHHHh--CCcCCCcCchhhc
Confidence 46899999854 4789999998753
No 64
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.90 E-value=12 Score=18.95 Aligned_cols=13 Identities=15% Similarity=0.692 Sum_probs=9.8
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|++|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3579999988863
No 65
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=34.75 E-value=31 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCccccccCcccccccCCCCCCCCCCCccc-cccccee
Q 039690 34 GDVTCEICHQPYQPGYTAPPPPPQSEDTTI-DISEAWT 70 (216)
Q Consensus 34 ~~~~CEICk~~y~~~y~~p~p~~~~~~~~i-~~~~~w~ 70 (216)
....|.+|++.|......|.-...+ .|.. ++-++|.
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~p-GT~f~~lPddw~ 42 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPP-GTPFVDLSDSFM 42 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCS-SCCGGGSCTTCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCC-CCchhhCCCCCc
Confidence 3578999999998766544333322 3332 4456665
No 66
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.23 E-value=16 Score=18.51 Aligned_cols=12 Identities=25% Similarity=0.980 Sum_probs=9.7
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 579999998864
No 67
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=33.70 E-value=8.7 Score=29.84 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCccccccCccc
Q 039690 21 AHRKCVQRWCNEKGDVTCEICHQPY 45 (216)
Q Consensus 21 vH~~CL~~W~~~k~~~~CEICk~~y 45 (216)
.+..|+.+|++ ++...|.+|+...
T Consensus 53 FC~~Ci~~~~~-~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 53 YCSFCLASILS-SGPQNCAACVHEG 76 (141)
T ss_dssp EEHHHHHHHGG-GSCEECHHHHHTT
T ss_pred cCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 57899999996 3557899999864
No 68
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.73 E-value=9.4 Score=19.33 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=9.9
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 479999999874
No 69
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.34 E-value=14 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=10.2
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|++|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 4579999998864
No 70
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.37 E-value=24 Score=23.78 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=13.8
Q ss_pred CccccccCcccccccCCC
Q 039690 35 DVTCEICHQPYQPGYTAP 52 (216)
Q Consensus 35 ~~~CEICk~~y~~~y~~p 52 (216)
...|.+|++.|......|
T Consensus 3 ~y~C~~CGyvYd~~~Gdp 20 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLP 20 (55)
T ss_dssp EEEETTTCCEEETTTCBT
T ss_pred cEEeCCCCeEECCCcCCc
Confidence 358999999998765444
No 71
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.05 E-value=23 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=14.7
Q ss_pred CCccccccCcccccccCCC
Q 039690 34 GDVTCEICHQPYQPGYTAP 52 (216)
Q Consensus 34 ~~~~CEICk~~y~~~y~~p 52 (216)
....|.+|+|.|......|
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp 44 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWP 44 (81)
T ss_dssp CEEEETTTCCEEETTTCBT
T ss_pred ceEEeCCCCEEEcCCcCCc
Confidence 4689999999998765444
No 72
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=29.10 E-value=7.3 Score=28.40 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=17.1
Q ss_pred HHHcCCccccccCcccccccCCCC
Q 039690 30 CNEKGDVTCEICHQPYQPGYTAPP 53 (216)
Q Consensus 30 ~~~k~~~~CEICk~~y~~~y~~p~ 53 (216)
+.+.....|..|++.|+.++-.|+
T Consensus 51 l~~g~~~RC~eCG~~fkL~~vg~~ 74 (80)
T 2odx_A 51 PTVNEVARCWECGSVYKLNPVGVP 74 (80)
T ss_dssp CCTTCEEECSSSCCEEEECCCC--
T ss_pred ecCCCCeECCCCCeEEEEEEcCCC
Confidence 334456799999999999886553
No 73
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.74 E-value=17 Score=18.45 Aligned_cols=13 Identities=15% Similarity=0.723 Sum_probs=10.1
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|++|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3579999998864
No 74
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.32 E-value=20 Score=23.92 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=13.3
Q ss_pred CccccccCcccccccCCC
Q 039690 35 DVTCEICHQPYQPGYTAP 52 (216)
Q Consensus 35 ~~~CEICk~~y~~~y~~p 52 (216)
...|.+|++.|......|
T Consensus 2 ~~~C~~CGyvYd~~~Gdp 19 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDP 19 (52)
T ss_dssp EEEESSSSCEEETTTCBG
T ss_pred cEEeCCCCeEECCCcCCc
Confidence 357999999998755433
No 75
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.19 E-value=34 Score=25.30 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCccccccCcccccccCCCCCCCCCCCccc-cccccee
Q 039690 34 GDVTCEICHQPYQPGYTAPPPPPQSEDTTI-DISEAWT 70 (216)
Q Consensus 34 ~~~~CEICk~~y~~~y~~p~p~~~~~~~~i-~~~~~w~ 70 (216)
....|.+|+|.|......|.-...+ .+.. ++-++|.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~p-GT~fedlPddW~ 70 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTP-GTRFEDIPDDWC 70 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCS-CCCGGGCCTTCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCC-CCChhHCCCCCC
Confidence 4689999999998766544333322 2222 4455664
No 76
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.03 E-value=23 Score=17.69 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=9.4
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 479999988863
No 77
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.95 E-value=23 Score=17.83 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=9.5
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 479999988864
No 78
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.81 E-value=24 Score=18.02 Aligned_cols=12 Identities=17% Similarity=0.880 Sum_probs=9.7
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 579999998864
No 79
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.66 E-value=22 Score=19.41 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=11.2
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 35789999999864
No 80
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.17 E-value=17 Score=18.47 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=9.6
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 479999998864
No 81
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.67 E-value=24 Score=19.07 Aligned_cols=14 Identities=14% Similarity=0.721 Sum_probs=11.1
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 35689999999864
No 82
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.46 E-value=15 Score=18.90 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=10.2
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|++|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 3579999998864
No 83
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.15 E-value=21 Score=18.05 Aligned_cols=13 Identities=15% Similarity=0.726 Sum_probs=10.0
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|+.|+..|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4579999998863
No 84
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.04 E-value=18 Score=19.38 Aligned_cols=14 Identities=14% Similarity=0.672 Sum_probs=11.0
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 6 SGYVCALCLKKFVS 19 (35)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCcchhCC
Confidence 35689999999864
No 85
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.61 E-value=15 Score=18.92 Aligned_cols=12 Identities=17% Similarity=0.802 Sum_probs=9.8
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 479999998864
No 86
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.76 E-value=9.1 Score=28.22 Aligned_cols=30 Identities=23% Similarity=0.675 Sum_probs=21.3
Q ss_pred cCCccccccCcccccccCCCCCCCCCCCcccccccce
Q 039690 33 KGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAW 69 (216)
Q Consensus 33 k~~~~CEICk~~y~~~y~~p~p~~~~~~~~i~~~~~w 69 (216)
.+...|.+|+..|++..+ ....++|+-..|
T Consensus 45 ~g~l~C~~Cg~~~~~~i~-------~L~epiDVYs~W 74 (85)
T 1wii_A 45 TGVISCTVCLEEFQTPIT-------YLSEPVDVYSDW 74 (85)
T ss_dssp EEEEEESSSCCEEEEECC-------SSCCTTHHHHHH
T ss_pred EEEEEcccCCCeEEeccC-------ccCcchhhHHHH
Confidence 367899999999987554 334556666666
No 87
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.68 E-value=22 Score=19.13 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=11.1
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 35689999999864
No 88
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=24.58 E-value=18 Score=24.63 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=22.7
Q ss_pred CCccccccccCchhh-HHHHHHHHHHHHcCCccccccCccccc
Q 039690 6 KNLEVPCSCSGSLKY-AHRKCVQRWCNEKGDVTCEICHQPYQP 47 (216)
Q Consensus 6 ~~li~PC~C~GSlky-vH~~CL~~W~~~k~~~~CEICk~~y~~ 47 (216)
++...||. +. ....|+.+| ..|.+|+..+..
T Consensus 36 ~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 36 AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 34455663 23 678999999 799999998764
No 89
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.82 E-value=21 Score=19.28 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=11.1
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 8 KPYKCPQCSYASAI 21 (36)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCCCCCCCCcccCC
Confidence 35689999999864
No 90
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.38 E-value=17 Score=18.59 Aligned_cols=12 Identities=17% Similarity=0.659 Sum_probs=9.8
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 479999998864
No 91
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.60 E-value=23 Score=19.28 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=11.0
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elv_A 8 LLYDCHICERKFKN 21 (36)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 35689999998864
No 92
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=22.07 E-value=28 Score=18.92 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=9.6
Q ss_pred ccccccCccccc
Q 039690 36 VTCEICHQPYQP 47 (216)
Q Consensus 36 ~~CEICk~~y~~ 47 (216)
..|++|+..|..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 479999998863
No 93
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.93 E-value=22 Score=19.18 Aligned_cols=13 Identities=15% Similarity=0.654 Sum_probs=10.4
Q ss_pred ccccccCcccccc
Q 039690 36 VTCEICHQPYQPG 48 (216)
Q Consensus 36 ~~CEICk~~y~~~ 48 (216)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 3 FACPACPKRFMRS 15 (32)
T ss_dssp SSSSSSCTTHHHH
T ss_pred CCCCCCCcccCCH
Confidence 5799999998753
No 94
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=21.52 E-value=29 Score=20.24 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=11.4
Q ss_pred CCccccccccCchhhH
Q 039690 6 KNLEVPCSCSGSLKYA 21 (216)
Q Consensus 6 ~~li~PC~C~GSlkyv 21 (216)
|.--+||.|+|--.|.
T Consensus 8 naachpc~c~~rp~yc 23 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYC 23 (26)
T ss_dssp CSSCCTTTSTTCCGGG
T ss_pred CccccccccCCCCCcc
Confidence 3446899999876553
No 95
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.12 E-value=26 Score=19.05 Aligned_cols=14 Identities=14% Similarity=0.558 Sum_probs=11.1
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 35689999999864
No 96
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.06 E-value=28 Score=18.97 Aligned_cols=14 Identities=14% Similarity=0.776 Sum_probs=11.0
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elo_A 8 RSYSCPVCEKSFSE 21 (37)
T ss_dssp CCCEETTTTEECSS
T ss_pred CCcCCCCCCCccCC
Confidence 35689999999864
No 97
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=26 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.486 Sum_probs=11.1
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elp_A 8 RAMKCPYCDFYFMK 21 (37)
T ss_dssp CCEECSSSSCEECS
T ss_pred CCeECCCCChhhcc
Confidence 35689999999874
No 98
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.64 E-value=62 Score=21.11 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 039690 145 FSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQ 176 (216)
Q Consensus 145 ftl~~lRaaGilLP~Yim~~~i~~iQ~~r~rq 176 (216)
.+....-+.| +|=+.|+.-.+...-|||++|
T Consensus 11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSC
T ss_pred ccchHHHHHH-HHHHHHHHHHHHhheehhhhh
Confidence 3444556677 443444444456666666544
No 99
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.52 E-value=39 Score=19.06 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=11.4
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2eos_A 10 KPYPCEICGTRFRH 23 (42)
T ss_dssp CCBCCSSSCCCBSS
T ss_pred CCEECCCCCCccCC
Confidence 45789999999874
No 100
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.48 E-value=31 Score=18.72 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.0
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2els_A 8 KIFTCEYCNKVFKF 21 (36)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEECCCCCceeCC
Confidence 35689999999864
No 101
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.37 E-value=26 Score=19.46 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=10.6
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|++|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 4689999999864
No 102
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=38 Score=18.96 Aligned_cols=14 Identities=14% Similarity=0.617 Sum_probs=11.1
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (42)
T 2yte_A 9 KPYSCAECKETFSD 22 (42)
T ss_dssp CSCBCTTTCCBCSS
T ss_pred CCeECCCCCCccCC
Confidence 45689999999864
No 103
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.12 E-value=38 Score=19.64 Aligned_cols=14 Identities=14% Similarity=0.719 Sum_probs=11.5
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eon_A 11 KPYKCQVCGKAFRV 24 (46)
T ss_dssp CSCBCSSSCCBCSS
T ss_pred cccCCCCCCcccCc
Confidence 45789999999864
No 104
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.05 E-value=36 Score=19.26 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=11.3
Q ss_pred CCccccccCccccc
Q 039690 34 GDVTCEICHQPYQP 47 (216)
Q Consensus 34 ~~~~CEICk~~y~~ 47 (216)
....|++|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2en7_A 11 KPYVCNECGKAFRS 24 (44)
T ss_dssp SSSCCTTTCCCCSS
T ss_pred cCeECCCCCCccCC
Confidence 45789999999864
No 105
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.03 E-value=27 Score=19.46 Aligned_cols=13 Identities=23% Similarity=0.889 Sum_probs=10.6
Q ss_pred CccccccCccccc
Q 039690 35 DVTCEICHQPYQP 47 (216)
Q Consensus 35 ~~~CEICk~~y~~ 47 (216)
...|++|+..|..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4689999999864
Done!