BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039692
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 134/350 (38%), Gaps = 73/350 (20%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRW--SFYAGKDISATPAVANGVVYFP-SWN 57
WL+HG +R++ + I+ VR+L L W + + ATP +GV+Y SW+
Sbjct: 18 WLSHGRTYAEQRFSPLK-QIDASNVRSLGLAWYMDLDNTRGLEATPLFHDGVIYTSMSWS 76
Query: 58 GYLYAVNAFNGALIWEQN---------------LSKLTGLSGTGIXXXXXXXXXXXXSRS 102
+ AV+A +G +W + +++ L G +
Sbjct: 77 -RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAK 135
Query: 103 NGELVWSTQI-DPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161
G+ +WS Q DP IT + V G +G E + RG ++ D
Sbjct: 136 TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSAYDADT 187
Query: 162 GRIIWQTYMLP---------------------DNGGKRGGYSGAAVWGS---SPAIDVIR 197
G++ W+ Y +P D K GG G VW S P +D++
Sbjct: 188 GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGG--GGTVWDSMAYDPELDLLY 245
Query: 198 RQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPD 257
N ++Y +SI+A+ D+G++AW +
Sbjct: 246 VGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW------------------HYQ 287
Query: 258 CPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
PG + D + L ++ +G+ R V++ K+GF + DR +G +I
Sbjct: 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 131/350 (37%), Gaps = 72/350 (20%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAGKD--ISATPAVANGVVYFPSWNG 58
W++ G + +RY+ + I+ V L L WS+ D + ATP V +GV+Y
Sbjct: 22 WMSTGRTYDEQRYSPLK-QISDQNVGQLGLAWSYKLDLDRGVEATPIVVDGVMYTTGPFS 80
Query: 59 YLYAVNAFNGALIWEQNLSKLTGLSGTG---------------IXXXXXXXXXXXXSRSN 103
+YA++A +G LIW+ + +G +
Sbjct: 81 VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKT 140
Query: 104 GELVWS--TQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161
G+ WS T+ D + IT + V G +G E + RG + D
Sbjct: 141 GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV--------RGYVTAYDAET 192
Query: 162 GRIIWQTYMLP---------------------DNGGKRGGYSGAAVWGS---SPAIDVIR 197
G+ W+ Y +P D ++GG G W S P ++++
Sbjct: 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGG--GGTAWDSFAYDPELNLLY 250
Query: 198 RQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPD 257
N P Q +++ +SIVA++ D+G W Y T
Sbjct: 251 IGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW---------HYQTT------- 294
Query: 258 CPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
PG D + +L + +G+ R V++ K+GF + DR +G+++
Sbjct: 295 --PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342
>pdb|1KB0|A Chain A, Crystal Structure Of Quinohemoprotein Alcohol
Dehydrogenase From Comamonas Testosteroni
Length = 677
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 126/349 (36%), Gaps = 69/349 (19%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSF--YAGKDISATPAVANGVVYFPSWNG 58
W G D RY+ + IN V++L L WS+ + + + ATP V +G++Y +
Sbjct: 29 WPTIGVDYAETRYSRLD-QINAANVKDLGLAWSYNLESTRGVEATPVVVDGIMYVSASWS 87
Query: 59 YLYAVNAFNGALIW--EQNLSKLTGLSGT-------------GIXXXXXXXXXXXXSRSN 103
++A++ G IW + + + TG G + +
Sbjct: 88 VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAAT 147
Query: 104 GELVWSTQIDPRPRSQITMSGS--VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161
G+ VW + +T++G+ V+ G +G E + RG + D
Sbjct: 148 GKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGV--------RGYITAYDAET 199
Query: 162 GRIIWQTYMLP--------DNGGKRGGYS------------GAAVWGSSPAIDVIRRQKQ 201
G W+ + +P D KR + G +W S +
Sbjct: 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYV 259
Query: 202 NNQTTKP-THPDQCIS--SDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDC 258
P +H + ++Y SIVALD D+G+ W +
Sbjct: 260 GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW------------------HYQE 301
Query: 259 PPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
PG N D + +L I G+ R V++ K+GF + DR +G I
Sbjct: 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIXX 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG +
Sbjct: 66 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 125
Query: 90 XXXXXXXXXXSRSNGELVWSTQIDPRPRSQITMS-GSVYMGAFYVGLSSLEEALPADQCC 148
+ S+G + W T++ S+ +S G V + L +L EA A +
Sbjct: 126 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 184
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 185 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 244
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 245 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 290
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
D+ TP V NGVV+ ++NG L A++ +G ++W++ L
Sbjct: 247 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 284
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 36/158 (22%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIXXXX 91
W + + P V++G+V + NG L A+N +GA+ W NL + LS G
Sbjct: 144 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRGESAPT 202
Query: 92 XXXXXXXXSRSN----------GELVW---------STQIDPRPRSQITMSGSVYMGAFY 132
N G+++W ST+ID S + + V G +
Sbjct: 203 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF 260
Query: 133 VGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 261 --------------ALAYNGNLTALDLRSGQIMWKREL 284
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIXX 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG +
Sbjct: 50 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 109
Query: 90 XXXXXXXXXXSRSNGELVWSTQIDPRPRSQITMS-GSVYMGAFYVGLSSLEEALPADQCC 148
+ S+G + W T++ S+ +S G V + L +L EA A +
Sbjct: 110 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 168
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 169 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 228
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 229 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 274
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
D+ TP V NGVV+ ++NG L A++ +G ++W++ L
Sbjct: 231 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 268
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 36/158 (22%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIXXXX 91
W + + P V++G+V + NG L A+N +GA+ W NL + LS G
Sbjct: 128 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRGESAPT 186
Query: 92 XXXXXXXXSRSN----------GELVW---------STQIDPRPRSQITMSGSVYMGAFY 132
N G+++W ST+ID S + + V G +
Sbjct: 187 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF 244
Query: 133 VGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 245 --------------ALAYNGNLTALDLRSGQIMWKREL 268
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIXX 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG +
Sbjct: 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 108
Query: 90 XXXXXXXXXXSRSNGELVWSTQIDPRPRSQITMS-GSVYMGAFYVGLSSLEEALPADQCC 148
+ S+G + W T++ S+ +S G V + L +L EA A +
Sbjct: 109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 167
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 168 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 273
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
D+ TP V NGVV+ ++NG L A++ +G ++W++ L
Sbjct: 230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 36/158 (22%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIXXXX 91
W + + P V++G+V + NG L A+N +GA+ W NL + LS G
Sbjct: 127 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRGESAPT 185
Query: 92 XXXXXXXXSRSN----------GELVW---------STQIDPRPRSQITMSGSVYMGAFY 132
N G+++W ST+ID S + + V G +
Sbjct: 186 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF 243
Query: 133 VGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 244 --------------ALAYNGNLTALDLRSGQIMWKREL 267
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIXX 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG +
Sbjct: 44 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 103
Query: 90 XXXXXXXXXXSRSNGELVWSTQIDPRPRSQITMS-GSVYMGAFYVGLSSLEEALPADQCC 148
+ S+G + W T++ S+ +S G V + L +L EA A +
Sbjct: 104 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 162
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 163 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 222
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 223 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 268
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
D+ TP V NGVV+ ++NG L A++ +G ++W++ L
Sbjct: 225 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 262
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 36/158 (22%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIXXXX 91
W + + P V++G+V + NG L A+N +GA+ W NL + LS G
Sbjct: 122 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRGESAPT 180
Query: 92 XXXXXXXXSRSN----------GELVW---------STQIDPRPRSQITMSGSVYMGAFY 132
N G+++W ST+ID S + + V G +
Sbjct: 181 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF 238
Query: 133 VGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 239 --------------ALAYNGNLTALDLRSGQIMWKREL 262
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIXX 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG +
Sbjct: 41 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 100
Query: 90 XXXXXXXXXXSRSNGELVWSTQIDPRPRSQITMS-GSVYMGAFYVGLSSLEEALPADQCC 148
+ S+G + W T++ S+ +S G V + L +L EA A +
Sbjct: 101 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 159
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 160 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 219
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 220 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 265
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
D+ TP V NGVV+ ++NG L A++ +G ++W++ L
Sbjct: 222 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 259
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 36/158 (22%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIXXXX 91
W + + P V++G+V + NG L A+N +GA+ W NL + LS G
Sbjct: 119 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRGESAPT 177
Query: 92 XXXXXXXXSRSN----------GELVW---------STQIDPRPRSQITMSGSVYMGAFY 132
N G+++W ST+ID S + + V G +
Sbjct: 178 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF 235
Query: 133 VGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 236 --------------ALAYNGNLTALDLRSGQIMWKREL 259
>pdb|3Q7M|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup I222
pdb|3Q7N|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P212121
Length = 376
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 58/243 (23%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIXX 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG +
Sbjct: 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 108
Query: 90 XXXXXXXXXXSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCT 149
+ S+G + W T++ S+ +S + + T
Sbjct: 109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVL------------------IHT 150
Query: 150 FRGSLAKLDVRNGRIIWQTYMLPDNGGKRG------GYSGAAVWGSSPAIDVIRR----- 198
G L L+ +G + W + + RG + A V G + + +
Sbjct: 151 SNGQLQALNEADGAVKWTVNLDXPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLXEQGQX 210
Query: 199 --QKQNNQTTKPTHPDQCISSDI-------------YANSIVALDIDSGRIAWAKPLGGY 243
Q++ +Q T T D+ D Y ++ ALD+ SG+I W + LG
Sbjct: 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIXWKRELGSV 270
Query: 244 DIF 246
+ F
Sbjct: 271 NDF 273
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
D+ TP V NGVV+ ++NG L A++ +G + W++ L
Sbjct: 230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIXWKREL 267
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 34/157 (21%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLS----KLTGLSG--T 85
W + + P V++G+V + NG L A+N +GA+ W NL L G S T
Sbjct: 127 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDXPSLSLRGESAPTT 186
Query: 86 GIXXXXXXXXXXXXS---RSNGELVW---------STQIDPRPRSQITMSGSVYMGAFYV 133
S G+ +W ST+ID S + + V G +
Sbjct: 187 AFGAAVVGGDNGRVSAVLXEQGQXIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF- 243
Query: 134 GLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I W+ +
Sbjct: 244 -------------ALAYNGNLTALDLRSGQIXWKREL 267
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 31 RWSFYAGKDISATPAVAN-GVVYFPSWNGYLYAVN 64
+W F GK I ++P + N +YF S++G+LYA+N
Sbjct: 247 KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN 281
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 25 VRNLRLRWSFYAGKDISATPAVA-NGVVYFPSWNGYLYAVNAFNGALIW 72
V + +++W F G I ++P +A NG +Y S N LYA+N +G++ W
Sbjct: 6 VNDCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAINT-DGSVKW 53
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 31 RWSFYAGKDISATPAVA-NGVVYFPSWNGYLYAVN 64
+W+FYAG PA++ +G +Y S +G+LYA+N
Sbjct: 207 KWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN 241
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 31 RWSFYAGKDISATPAVA-NGVVYFPSWNGYLYAVN 64
+W F K I ATP V+ +G +Y S + YLYA+N
Sbjct: 129 KWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAIN 163
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 31 RWSFYAGKDISATPAV-ANGVVYFPSWNGYLYAV 63
+W+F G I ATP + NG +YF + NG YA+
Sbjct: 287 KWNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 42 ATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
T A A +V++ + +G+L A N+ G L+W+ L
Sbjct: 478 GTLATAGNLVFYGTLDGFLKARNSDTGELVWKHKL 512
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 38/158 (24%)
Query: 154 LAKLDVRNGRIIWQ-TYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPD 212
L LD + G+ +W + LPD+ P DV+ R + D
Sbjct: 80 LFALDAKTGKRLWTYNHRLPDD--------------IRPCCDVVNRGAA-------IYGD 118
Query: 213 QCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAP 272
+ + A S+VAL+ ++G++ W K + Y P + D
Sbjct: 119 KVFFGTLDA-SVVALNKNTGKVVWKKKFADHGAGYTMTGA---------PTIVKDGKTGK 168
Query: 273 MLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310
+LL ++G VV G +A D D+G+ IW +
Sbjct: 169 VLLIHGSSGDEFGVV------GRLFARDPDTGEEIWMR 200
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 167 QTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYAN 222
+ Y + GG GG G VWGS+ + + ++ T + + + IY N
Sbjct: 162 EVYNMAIRGGNEGGLDGIDVWGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,819,387
Number of Sequences: 62578
Number of extensions: 600086
Number of successful extensions: 1238
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 60
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)