BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039692
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P77931|PVADH_PSESP Polyvinylalcohol dehydrogenase OS=Pseudomonas sp. GN=pvaA PE=1 SV=1
Length = 639
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 163/364 (44%), Gaps = 43/364 (11%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYL 60
W G + N R+ L V L+++W+F + V ++ S +G +
Sbjct: 147 WNGWGAGITNARFQPNPGL-TAADVPRLKVKWAFNYPGSKNGQATVVGDRLFVTSMSGAV 205
Query: 61 YAVNAFNGALIWEQNLSKLTGLS------------GTGIVVNVTVAVVVAVSRSNGELVW 108
YA+NA G + W + + T S I + VA+ G+ +W
Sbjct: 206 YALNAKTGCVYWRHDAAAATRSSVHVVQLPAGAPAQYAIFFSDWTKAAVALDAQTGKQLW 265
Query: 109 STQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPAD---QCCTFRGSLAKLDVRNGRII 165
T ID +P Q+T S + + G +V +SS EA + +CC FRG+L LD +G+++
Sbjct: 266 KTTIDDQPGVQMTGSPTYHEGKLFVPISSGNEAFATNDQWECCKFRGALVALDALSGKVL 325
Query: 166 WQTYM---------LPDNGGKRGGYSGAAVWGSSPAIDVIR---RQKQNNQTTKPTHPDQ 213
W+TY L G + G +G ++W S+P ID R +N T+ H
Sbjct: 326 WKTYTTQKEPAPFRLNKLGKQMWGPAGGSIW-SAPTIDPKRGLVYVATSNSYTEVHHEG- 383
Query: 214 CISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM 273
+++++A++I++G++ W + D + C P +CP D G +P+
Sbjct: 384 -------SDAVMAMEIETGKVRWINQVTKDDNYIIGC--PRAANCPEKVGPDFALGNSPI 434
Query: 274 LLTISTNGRFRDVVVAVQKSGFAWAFDRDS-GDIIWFKLAGPGGREGGGVWGAATDGRRV 332
L T+ R +V QKSG +A D D+ G++IW + PG GG +G A D V
Sbjct: 435 LHTLQDG---RQYIVVGQKSGAVYAMDPDNDGELIWMRRVSPGSELGGVEFGMAADAENV 491
Query: 333 YTNI 336
Y I
Sbjct: 492 YVGI 495
>sp|Q588Z1|PVADH_SPHS1 Polyvinylalcohol dehydrogenase OS=Sphingopyxis sp. (strain 113P3)
GN=pvadh PE=1 SV=3
Length = 654
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 155/363 (42%), Gaps = 45/363 (12%)
Query: 7 DLNNRRYAYGEVLINPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAF 66
+ +N R+ L + + L+L+W+F + V ++ S +G +YA+NA
Sbjct: 160 EKDNGRFQRKPAL-DVADIPKLKLKWAFQYPGSKNGQATVIGDRLFTTSTSGAVYALNAK 218
Query: 67 NGALIWEQNLSKLTGLS------------GTGIVVNVTVAVVVAVSRSNGELVWSTQIDP 114
G + W T S T + + VA+ G+ +W T +D
Sbjct: 219 TGCVYWRHAAEGATRTSPVIAALPEGAPAKTALFFSDFTKAAVALDAETGKQLWKTVVDD 278
Query: 115 RPRSQITMSGSVYMGAFYVGLSSLEEA---LPADQCCTFRGSLAKLDVRNGRIIWQTYM- 170
+P Q+T S + + G YV +SS EA +P +CC FRG+L LD G+I+W+ Y
Sbjct: 279 QPALQMTGSITYWDGKIYVPISSGTEAFAQIPTWECCKFRGALVALDAATGKILWKRYTT 338
Query: 171 --------LPDNGGKRGGYSGAAVWGSSPAIDVIRRQ----KQNNQTTKPTHPDQCISSD 218
L G + G SG A+W +P +D RR N+ T P
Sbjct: 339 EQEPRPFKLNKAGRQMWGPSGGAIW-VTPTVDEARRLIYVGTSNSYTDVPYD-------- 389
Query: 219 IYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLV--PNNPDCPPGPNLDADFGEAPMLLT 276
++S++A+D D+G + W L D + C + +CP D G AP+
Sbjct: 390 -NSDSVMAIDADTGAVRWTVQLLADDNYIDGCWQKGKEHANCPNPLGPDFSIGAAPIYRK 448
Query: 277 ISTNGRFRDVVVAVQKSGFAWAFD-RDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTN 335
++ F ++ QKSG +A D + G IW + G GG +G A D +VY
Sbjct: 449 MADGKEF---LLVGQKSGMIYALDPANKGAKIWERQLSLGSALGGIEFGTAADDGKVYAG 505
Query: 336 IVN 338
+ +
Sbjct: 506 VSD 508
>sp|Q46444|QHED_COMTE Quinohemoprotein ethanol dehydrogenase type-1 OS=Comamonas
testosteroni GN=qheDH PE=1 SV=1
Length = 708
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 135/349 (38%), Gaps = 69/349 (19%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSF--YAGKDISATPAVANGVVYFPSWNG 58
W G D RY+ + IN V++L L WS+ + + + ATP V +G++Y +
Sbjct: 60 WPTIGVDYAETRYSRLD-QINAANVKDLGLAWSYNLESTRGVEATPVVVDGIMYVSASWS 118
Query: 59 YLYAVNAFNGALIW--EQNLSKLTGLSGTGIVVNVTVAV-------------VVAVSRSN 103
++A++ G IW + + + TG G VVN VA+ ++A+ +
Sbjct: 119 VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAAT 178
Query: 104 GELVWSTQIDPRPRSQITMSGS--VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161
G+ VW + +T++G+ V+ G +G E + RG + D
Sbjct: 179 GKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGKRGAEYGV--------RGYITAYDAET 230
Query: 162 GRIIWQTYMLP--------DNGGKRGGYS------------GAAVWGSSPAIDVIRRQKQ 201
G W+ + +P D KR + G +W S +
Sbjct: 231 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYV 290
Query: 202 NNQTTKP-THPDQCIS--SDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDC 258
P +H + ++Y SIVALD D+G+ W +
Sbjct: 291 GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW------------------HYQE 332
Query: 259 PPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
PG N D + +L I G+ R V++ K+GF + DR +G I
Sbjct: 333 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 381
>sp|Q8GR64|QHED_PSEPU Quinohemoprotein alcohol dehydrogenase ADH IIB OS=Pseudomonas
putida GN=qbdA PE=1 SV=1
Length = 690
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 139/349 (39%), Gaps = 71/349 (20%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRW--SFYAGKDISATPAVANGVVYFPSWNG 58
WL+HG +R++ + I+ VR+L L W + + ATP +GV+Y
Sbjct: 40 WLSHGRTYAEQRFSPLK-QIDASNVRSLGLAWYMDLDNTRGLEATPLFHDGVIYTSMSWS 98
Query: 59 YLYAVNAFNGALIW--EQNLSKLTGLSGTGIVVNVTVAV-------------VVAVSRSN 103
+ AV+A +G +W + ++K+ + VN VA+ ++A+
Sbjct: 99 RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKT 158
Query: 104 GELVWSTQI-DPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNG 162
G+ +WS Q DP IT + V G +G E + RG ++ D G
Sbjct: 159 GKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSAYDADTG 210
Query: 163 RIIWQTYMLP---------------------DNGGKRGGYSGAAVWGS---SPAIDVIRR 198
++ W+ Y +P D K GG G VW S P +D++
Sbjct: 211 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGG--GGTVWDSMAYDPELDLLYV 268
Query: 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDC 258
N ++Y +SI+A+ D+G++AW +
Sbjct: 269 GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW------------------HYQV 310
Query: 259 PPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
PG + D + L ++ +G+ R V++ K+GF + DR +G +I
Sbjct: 311 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 359
>sp|Q934G0|LUH_PSESP Lupanine 17-hydroxylase [cytochrome c] OS=Pseudomonas sp. GN=luh
PE=1 SV=1
Length = 695
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 132/341 (38%), Gaps = 67/341 (19%)
Query: 9 NNRRYAYGEVLINPVTVRNLRLRW--SFYAGKDISATPAVANGVVYFPSWNGYLYAVNAF 66
N + Y +N V+NL L W AG + P VA+GV+Y G +YA +
Sbjct: 46 NEQHYFSALKDVNKSNVKNLGLSWFTDMEAGDGLVGNPLVADGVIYQGGPPGKIYANDLK 105
Query: 67 NGALIW----EQNLSKLTGLSGT-GIVVNVTVAV------------VVAVSRSNGELVWS 109
G +W E K T +G G VN +AV ++AVSR+ +L WS
Sbjct: 106 TGKNLWTYTPEVQYDKDTSWTGFWGTHVNRGLAVDDDNVYIGSYCKLLAVSRTTHKLTWS 165
Query: 110 TQ-IDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168
+Q DP+ IT + V G ++G +S + D RG L D + G+ +W+
Sbjct: 166 SQSCDPKKMQAITGAPRVGGGKVFIGNASGD--FGGD-----RGHLDAFDAKTGKHLWRF 218
Query: 169 YMLPDNGGK----------------------RGGYSGAAVWGSSPAIDVIRRQKQNNQTT 206
Y +P + K +GG S A D +
Sbjct: 219 YTMPGDPSKPFENDLLAKASKTWGTDYWKYTKGGVSPWDAITYDEASDTLYFGTDGPSPW 278
Query: 207 KPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDA 266
P +++++SI+A+D +G W +F V N+ G N+ A
Sbjct: 279 SPAQRAPDAGDELFSHSIIAVDASTGAYKW----------HFQT-VQND-----GSNMSA 322
Query: 267 DFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
ML + G + VV+ K+G+ + D +G I
Sbjct: 323 TM--HIMLADLPVEGVSKRVVMTAPKNGYFYVLDASTGKFI 361
>sp|Q4W6G0|QGDA_PSEPU Quinohemoprotein alcohol dehydrogenase ADH-IIG OS=Pseudomonas
putida GN=qgdA PE=1 SV=1
Length = 718
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 137/350 (39%), Gaps = 72/350 (20%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAGKD--ISATPAVANGVVYFPSWNG 58
W++ G + +RY+ + I+ V L L WS+ D + ATP V +G +Y
Sbjct: 51 WMSTGRTYDEQRYSPLK-QISDQNVGQLGLAWSYKLDLDRGVEATPIVVDGAMYTTGPFS 109
Query: 59 YLYAVNAFNGALIWEQNLSKLTGLSGTGI--VVNVTVAV-------------VVAVSRSN 103
+YA++A +G LIW+ + +G VN VAV + A+
Sbjct: 110 VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKT 169
Query: 104 GELVWS--TQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161
G+ WS T+ D + IT + V G +G E + RG + D
Sbjct: 170 GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV--------RGYVTAYDAET 221
Query: 162 GRIIWQTYMLP---------------------DNGGKRGGYSGAAVWGS---SPAIDVIR 197
G+ W+ Y +P D ++GG G W S P ++++
Sbjct: 222 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGG--GGTAWDSFAYDPELNLLY 279
Query: 198 RQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPD 257
N P Q +++ +SIVA++ D+G W Y T
Sbjct: 280 IGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW---------HYQTT------- 323
Query: 258 CPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
PG D + +L + +G+ R V++ K+GF + DR +G+++
Sbjct: 324 --PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 371
>sp|O05542|DHET_GLUOX Alcohol dehydrogenase [cytochrome c] OS=Gluconobacter oxydans
(strain 621H) GN=adhA PE=1 SV=2
Length = 757
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/358 (20%), Positives = 131/358 (36%), Gaps = 78/358 (21%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFY--AGKDISATPAVANGVVYFPSWNG 58
WL++G + +RY+ + IN V L+L W + + TP + NGV+Y +
Sbjct: 54 WLSYGRSYSEQRYSPLD-QINTENVGKLKLAWHYDLDTNRGQEGTPLIVNGVMYATTNWS 112
Query: 59 YLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTVAV---------------VVAVSRSN 103
+ A++A G L+W + ++ G V+ ++A+
Sbjct: 113 KMKALDAATGKLLWSYDPKVPGNIADRGCCDTVSRGAAYWNGKVYFGTFDGRLIALDAKT 172
Query: 104 GELVWSTQIDPRP-----RSQITMSGS--VYMGAFYVGLSSLEEALPADQCCTFRGSLAK 156
G+LVWS P+ + T+ G+ + G +G E RG ++
Sbjct: 173 GKLVWSVYTIPKEAQLGHQRSYTVDGAPRIAKGKVLIGNGGAEFGA--------RGFVSA 224
Query: 157 LDVRNGRIIWQTYMLPD------------------------NGGKRGGYSGAAVWGS--- 189
D G++ W+ + +P+ NG + G VW S
Sbjct: 225 FDAETGKLDWRFFTVPNPENKPDGAASDDILMSKAYPTWGKNGAWKQQGGGGTVWDSLVY 284
Query: 190 SPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFT 249
P D++ N + +++ SIVA++ D+G+ W D + +T
Sbjct: 285 DPVTDLVYLGVGNGSPWNYKFRSEGKGDNLFLGSIVAINPDTGKYVWHFQETPMDEWDYT 344
Query: 250 CLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
+ + M L + NG R V+V K+GF + D +G I
Sbjct: 345 SV------------------QQIMTLDMPVNGEMRHVIVHAPKNGFFYIIDAKTGKFI 384
>sp|P18278|DHET_ACEAC Methanol dehydrogenase [cytochrome c] OS=Acetobacter aceti GN=adhA
PE=1 SV=1
Length = 742
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 131/353 (37%), Gaps = 68/353 (19%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRL--RWSFYAGKDISATPAVANGVVYFPSWNG 58
WL++G + +RY+ + IN V +L+L ++ + ATP V +G++Y +
Sbjct: 55 WLSYGRTYSEQRYSPLD-QINRSNVGDLKLLGYYTLDTNRGQEATPLVVDGIMYATTNWS 113
Query: 59 YLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTVAV---------------VVAVSRSN 103
+ A++A G L+W+ + ++ G V +VA
Sbjct: 114 KMEALDAATGKLLWQYDPKVPGNIADKGCCDTVNRGAGYWNGKVFWGTFDGRLVAADAKT 173
Query: 104 GELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTF--RGSLAKLDVRN 161
G+ VW+ P S GA V + L + F RG ++ D
Sbjct: 174 GKKVWAVNTIPADASLGKQRSYTVDGAVRVAKGLV---LIGNGGAEFGARGFVSAFDAET 230
Query: 162 GRIIWQTYMLPDNG--------------------GKRGGY----SGAAVWGS---SPAID 194
G++ W+ Y +P+N G +G + G VW S P D
Sbjct: 231 GKLKWRFYTVPNNKNEPDHAASDNILMNKAYKTWGPKGAWVRQGGGGTVWDSLVYDPVSD 290
Query: 195 VIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPN 254
+I N + + I S+++ SIVAL ++G W D + +T +
Sbjct: 291 LIYLAVGNGSPWNYKYRSEGIGSNLFLGSIVALKPETGEYVWHFQATPMDQWDYTSV--- 347
Query: 255 NPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
+ M L + G R V+V K+GF + D +G+ +
Sbjct: 348 ---------------QQIMTLDMPVKGEMRHVIVHAPKNGFFYVLDAKTGEFL 385
>sp|P28036|DHET_ACEPO Alcohol dehydrogenase [cytochrome c] OS=Acetobacter polyoxogenes
GN=adhA PE=1 SV=1
Length = 738
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 131/358 (36%), Gaps = 79/358 (22%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRW--SFYAGKDISATPAVANGVVYFPSWNG 58
W+ +G +++RY+ + IN V NL+L W + TP V +GV+Y +
Sbjct: 56 WMTYGRTYSDQRYSPLD-QINRSNVGNLKLAWYLDLDTNRGQEGTPLVIDGVMYATTNWS 114
Query: 59 YLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTVAV---------------VVAVSRSN 103
+ AV+A G L+W + ++ G V ++A+
Sbjct: 115 MMKAVDAATGKLLWSYDPRVPGNIADKGCCDTVNRGAAYWNGKVYFGTFDGRLIALDAKT 174
Query: 104 GELVWSTQIDPRPRSQI------TMSGS--VYMGAFYVGLSSLEEALPADQCCTFRGSLA 155
G+LVWS P P +++ T+ G+ + G +G E RG ++
Sbjct: 175 GKLVWSVNTIP-PEAELGKQRSYTVDGAPRIAKGRVIIGNGGSEFGA--------RGFVS 225
Query: 156 KLDVRNGRIIWQTYMLPDNGGKRGGYS-----------------------GAAVWGS--- 189
D G++ W+ + +P+ + S G VW S
Sbjct: 226 AFDAETGKVDWRFFTVPNPKNEPDAASDSVLMNKAYQTWSPTGAWTRQGGGGTVWDSIVY 285
Query: 190 SPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFT 249
P D++ N + + +++ SIVAL ++G W D + FT
Sbjct: 286 DPVADLVYLGVGNGSPWNYKYRSEGKGDNLFLGSIVALKPETGEYVWHFQETPMDQWDFT 345
Query: 250 CLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
+ M L + NG R V+V +K+GF + D +G+ I
Sbjct: 346 S------------------DQQIMTLDLPINGETRHVIVHARKNGFFYIIDAKTGEFI 385
>sp|Q5NIB1|BAMB_FRATT Outer membrane protein assembly factor BamB OS=Francisella
tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
GN=bamB PE=3 SV=1
Length = 456
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 84/231 (36%), Gaps = 60/231 (25%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQ----NLSKLTGLSGTGIVVNVTVAVVVAV 99
PA AN V+ P+ NG YA+ NG +IW+ NLS ++ + A+
Sbjct: 63 PAYANDTVFVPNQNGMAYALAITNGKIIWKNDTGTNLSVQPNTIANAVIFGSIKGTLTAI 122
Query: 100 SRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDV 159
+G+ +W T SQ T +Y + Y+ T GS++ D
Sbjct: 123 DDKDGQTLWRTDAPSSIFSQPT----IYDNSIYL--------------QTHDGSVSAFDA 164
Query: 160 RNGRIIWQT------YMLPDN------------GGKRGGYSG--------------AAVW 187
RNG W LP N G G G A
Sbjct: 165 RNGSKEWSVANNIPEITLPSNSSPIILNNTVMIGNAFGAVLGFTIKSGDRTINIPIAISH 224
Query: 188 GSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAK 238
GSSPA K + T P D + Y +IVALD DSG++ WAK
Sbjct: 225 GSSPA------DKMVDITANPMLYDHYLIFAAYQGAIVALDKDSGKMLWAK 269
>sp|Q44002|DHET_ACEEU Alcohol dehydrogenase [cytochrome c] OS=Acetobacter europaeus
GN=adh PE=3 SV=1
Length = 739
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 130/359 (36%), Gaps = 80/359 (22%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRW--SFYAGKDISATPAVANGVVYFPSWNG 58
W+ +G + +RY+ + IN V NL+L W + TP V +GV+Y +
Sbjct: 56 WMTYGRTYSEQRYSPLD-QINRSNVGNLKLAWYLDLDTNRGQEGTPLVIDGVMYATTNWS 114
Query: 59 YLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTVAV---------------VVAVSRSN 103
+ AV+A G L+W + ++ G V ++A+
Sbjct: 115 MMKAVDAATGKLLWSYDPRVPGNIADKGCCDTVNRGAAYWNGKVYFGTFDGRLIALDAKT 174
Query: 104 GELVWSTQIDPRPRSQI------TMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKL 157
G+LVWS P P +++ T+ G+ + V + + A RG +
Sbjct: 175 GKLVWSVNTIP-PEAELGKQRSYTVDGAPRIAKGRVIIGNGGSEFGA------RGFVTAF 227
Query: 158 DVRNGRIIWQTYMLPDNGG--------------------------KRGGYSGAAVWGS-- 189
D G++ W+ + P+ ++GG G VW S
Sbjct: 228 DAETGKVDWRFFTAPNPKNEPDHTASDSVLMNKAYQTWSPTGAWTRQGG--GGTVWDSIV 285
Query: 190 -SPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYF 248
P D++ N + + +++ SIVAL ++G W D + F
Sbjct: 286 YDPVADLVYLGVGNGSPWNYKYRSEGKGDNLFLGSIVALKPETGEYVWHFQETPMDQWDF 345
Query: 249 TCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
T + + M L + NG R V+V K+GF + D +G+ I
Sbjct: 346 TSV------------------QQIMTLDLPINGETRHVIVHAPKNGFFYIIDAKTGEFI 386
>sp|P29968|XOXF_PARDE Putative dehydrogenase XoxF OS=Paracoccus denitrificans GN=xoxF
PE=3 SV=2
Length = 600
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 149/360 (41%), Gaps = 87/360 (24%)
Query: 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAG--KDISATPAVANGVVY----FP 54
W GD N RY+ + IN V++LR+ W+F G + +P V V+Y FP
Sbjct: 35 WAIQMGDYANTRYSTLD-QINKDNVKDLRVAWTFSTGVLRGHEGSPLVIGDVMYVHTPFP 93
Query: 55 SWNGYLYAVNAF-NGALIW----EQNLSKLTGLSGTGIVVNVTVA-----------VVVA 98
+ ++A++ NG ++W +Q+ + + +S + ++ A VVA
Sbjct: 94 N---RVFALDLNDNGKILWRYEPQQDPNVIAVMSCDTVYRGLSYADGMILLGQADTTVVA 150
Query: 99 VSRSNGELVWSTQI-DPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKL 157
+ ++GE+ WST+I DP +T + VG+S E + RG + L
Sbjct: 151 LDATSGEVKWSTKIGDPGIGETLTATVVPVKDKVLVGISGGEYGV--------RGRMTAL 202
Query: 158 DVRNGRIIWQTYML-PDN-------------------------GGKRGGYSGAAVWG--- 188
++ +G W+ + PD G + G +WG
Sbjct: 203 NLTDGSEAWKAWSTGPDEELLVDPETTTHLGKPIGADSSLNSWEGDQWQIGGGTIWGWFS 262
Query: 189 SSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYF 248
P ++++ N T P+ Q + ++ +I+A D D+G W F
Sbjct: 263 YDPDLNLVYYGTGNPSTWNPS---QRPGDNKWSMTIMARDADTGMAKW-----------F 308
Query: 249 TCLVPNNPDCPPGPNLDADFGEAPMLLTIST-NGRFRDVVVAVQKSGFAWAFDRDSGDII 307
+ P++ D D G M+LT T +G+ R ++ ++G A+ DR++G+++
Sbjct: 309 YQMTPHD-------EWDYD-GVNEMILTNQTVDGQERKLLTHFDRNGLAYTMDRETGELL 360
>sp|F8GAQ8|BAMB_FRAST Outer membrane protein assembly factor BamB OS=Francisella sp.
(strain TX077308) GN=bamB PE=3 SV=1
Length = 521
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 36/244 (14%)
Query: 22 PVTVRNLRLRWSFYAGKD------ISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQN 75
P ++++WS G + +P AN V+ P+ NG Y ++ +G ++W+ +
Sbjct: 35 PPKEAKVKVKWSRKTGNGNGGLPIYNVSPTYANNTVFVPNQNGVAYGLSITDGKIVWKHD 94
Query: 76 ----LSKLTGLSGTGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM-SGSVYMGA 130
LS ++ V+ AV + +G+++W T SQ T+ S +Y
Sbjct: 95 TGTILSSQPNTIANAVIFGSVKGVLTAVDQKDGKILWRTDAPSSIFSQPTIYSNHLYTHT 154
Query: 131 FYVGLSSL----------------EEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDN 174
++S E LP+D + G ++ T ++
Sbjct: 155 HDGSVTSFDATNGSKVWNVTNNIPEITLPSDSSPIILNDTVMVGSAFGTVLGFTL---ES 211
Query: 175 GGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRI 234
G + A GSSPA K + T P + + +IVALD D+G++
Sbjct: 212 GDRTINLPVAIAHGSSPA------DKMVDITANPMLYGNYLIFAAFQGAIVALDKDTGKM 265
Query: 235 AWAK 238
WAK
Sbjct: 266 LWAK 269
>sp|P77774|BAMB_ECOLI Outer membrane protein assembly factor BamB OS=Escherichia coli
(strain K12) GN=bamB PE=1 SV=1
Length = 392
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIVV 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG + +
Sbjct: 65 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 124
Query: 90 NVTVAVVVAVSRSNGELVWSTQIDPRPRSQ-ITMSGSVYMGAFYVGLSSLEEALPADQCC 148
A V A++ S+G + W T++ S+ + G V + L +L EA A +
Sbjct: 125 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 183
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 184 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 243
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 244 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 289
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 34/157 (21%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLS----KLTGLSGTGI 87
W + + P V++G+V + NG L A+N +GA+ W NL L G S
Sbjct: 143 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT 202
Query: 88 VVNVTVA-----VVVAVSRSNGELVW---------STQIDPRPRSQITMSGSVYMGAFYV 133
V V AV G+++W ST+ID S + + V G +
Sbjct: 203 AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF- 259
Query: 134 GLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 260 -------------ALAYNGNLTALDLRSGQIMWKREL 283
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--LSGTGIVVNVTVAVV 96
D+ TP V NGVV+ ++NG L A++ +G ++W++ L + + G I + V
Sbjct: 246 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRV 305
Query: 97 VAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAK 156
+A++ G +W TQ D R + S +Y G VG S G L
Sbjct: 306 MALTIDGGVTLW-TQSDLLHR--LLTSPVLYNGNLVVGDS--------------EGYLHW 348
Query: 157 LDVRNGRIIWQ 167
++V +GR + Q
Sbjct: 349 INVEDGRFVAQ 359
>sp|Q32D50|BAMB_SHIDS Outer membrane protein assembly factor BamB OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=bamB PE=3 SV=1
Length = 392
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 24/226 (10%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIVV 89
PA+A+ VVY G + A+NA +G IW +L++ G +SG + +
Sbjct: 65 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYI 124
Query: 90 NVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMS-GSVYMGAFYVGLSSLEEALPADQCC 148
A V A++ S+G + W T++ S+ +S G V + L +L EA A +
Sbjct: 125 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-W 183
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS------GAAVWGS--SPAIDVIRRQK 200
T + L +R + GG G S G +W S A +
Sbjct: 184 TVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 243
Query: 201 QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF 246
++ T P + + + Y ++ ALD+ SG+I W + LG + F
Sbjct: 244 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF 289
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 34/157 (21%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLS----KLTGLSGTGI 87
W + + P V++G+V + NG L A+N +GA+ W NL L G S
Sbjct: 143 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPAT 202
Query: 88 VVNVTVA-----VVVAVSRSNGELVW---------STQIDPRPRSQITMSGSVYMGAFYV 133
V V AV G+++W ST+ID S + + V G +
Sbjct: 203 AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEID--RLSDVDTTPVVVNGVVF- 259
Query: 134 GLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 260 -------------ALAYNGNLTALDLRSGQIMWKREL 283
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--LSGTGIVVNVTVAVV 96
D+ TP V NGVV+ ++NG L A++ +G ++W++ L + + G I + V
Sbjct: 246 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRV 305
Query: 97 VAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAK 156
+A++ G +W TQ D R + S +Y G VG S G L
Sbjct: 306 MALTIDGGVTLW-TQSDLLHR--LLTSPVLYNGNLVVGDS--------------EGYLHW 348
Query: 157 LDVRNGRIIWQ 167
++V +GR + Q
Sbjct: 349 INVEDGRFVAQ 359
>sp|H9L451|BAMB_SALTY Outer membrane protein assembly factor BamB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=bamB PE=3 SV=1
Length = 392
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 58/243 (23%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--------------LSGTGIVV 89
P + + VVY G + A+NA +G IW NL + G ++G + +
Sbjct: 65 PVMVDNVVYAADRAGVVKALNADDGKEIWSVNLGEKDGWFSRSSALLSGGVTVAGGHVYI 124
Query: 90 NVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCT 149
A V A++ S+G W T++ S+ +S + + T
Sbjct: 125 GSEKAEVYALNTSDGTTAWQTKVAGEALSRPVVSDGIVL------------------IHT 166
Query: 150 FRGSLAKLDVRNGRIIWQTYMLPDNGGKRG------GYSGAAVWGSSPAIDVIRR----- 198
G L L+ +G I W + + RG + A V G + + +
Sbjct: 167 SNGQLQALNQADGAIKWTVNLDMPSLSLRGESAPATAFGAAIVGGDNGRVSAVLMQQGQM 226
Query: 199 --QKQNNQTTKPTHPDQCISSDI-------------YANSIVALDIDSGRIAWAKPLGGY 243
Q++ +Q T PT D+ D Y ++ ALD+ SG+I W + LG
Sbjct: 227 IWQQRISQATGPTEIDRLSDVDTTPVVVNGVVYALAYNGNLTALDLRSGQIMWKRELGSV 286
Query: 244 DIF 246
+ F
Sbjct: 287 NDF 289
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 30/155 (19%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLS----KLTGLSGTGI 87
W + + P V++G+V + NG L A+N +GA+ W NL L G S
Sbjct: 143 WQTKVAGEALSRPVVSDGIVLIHTSNGQLQALNQADGAIKWTVNLDMPSLSLRGESAPAT 202
Query: 88 VVNVTVA-----VVVAVSRSNGELVWSTQI-------DPRPRSQITMSGSVYMGAFYVGL 135
+ V AV G+++W +I + S + + V G Y
Sbjct: 203 AFGAAIVGGDNGRVSAVLMQQGQMIWQQRISQATGPTEIDRLSDVDTTPVVVNGVVY--- 259
Query: 136 SSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170
+ G+L LD+R+G+I+W+ +
Sbjct: 260 -----------ALAYNGNLTALDLRSGQIMWKREL 283
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--LSGTGIVVNVTVAVV 96
D+ TP V NGVVY ++NG L A++ +G ++W++ L + + G I + V
Sbjct: 246 DVDTTPVVVNGVVYALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGDRIYLVDQNDRV 305
Query: 97 VAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSS--------LEEALPADQCC 148
+A++ G +W TQ D R + S +Y G VG S + A Q
Sbjct: 306 LALTTDGGVTLW-TQSDLLHR--LLTSPVLYNGDLVVGDSEGYLHWINVDDGRFVAQQKV 362
Query: 149 TFRGSLAKLDVRNGRIIWQ 167
G L + V +G+++ Q
Sbjct: 363 DSSGFLTEPTVADGKLLIQ 381
>sp|Q7CJM5|BAMB_YERPE Outer membrane protein assembly factor BamB OS=Yersinia pestis
GN=bamB PE=3 SV=1
Length = 393
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 30/155 (19%)
Query: 29 RLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLS----KLTGLSG 84
++ W + + P V++GVV + NG L A+N +GA+ W NL L G S
Sbjct: 141 QVAWQTVVAGEALSRPVVSDGVVLIHTSNGMLQALNESDGAIKWTLNLDTPALSLRGESA 200
Query: 85 TGIVVNVTVA-----VVVAVSRSNGELVWSTQI-------DPRPRSQITMSGSVYMGAFY 132
+ + V AV G+L+W +I + + I ++ V G Y
Sbjct: 201 PAVAFGAAIVGGDNGRVSAVMMEQGQLIWQQRISQVTGATEIDRLNDIDITPVVVDGVVY 260
Query: 133 VGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167
+ G+L LD+R+G+I+W+
Sbjct: 261 --------------ALAYNGNLTALDLRSGQILWK 281
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 59/244 (24%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL---------------SGTGIV 88
PA V+ G + A++A G IW+ +LS+ T SG+ +
Sbjct: 65 PAWQGTSVFAADRKGLVKAMDADTGKQIWQTDLSEKTNFLSSNHSAMLSGGVTASGSHVY 124
Query: 89 VNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCC 148
V AVV A++ +G++ W T + S+ +S V +
Sbjct: 125 VGSEKAVVYALNAYDGQVAWQTVVAGEALSRPVVSDGVVL------------------IH 166
Query: 149 TFRGSLAKLDVRNGRIIWQTYMLPDNGGKRG------GYSGAAVWGSSPAIDVIRR---- 198
T G L L+ +G I W + RG + A V G + + +
Sbjct: 167 TSNGMLQALNESDGAIKWTLNLDTPALSLRGESAPAVAFGAAIVGGDNGRVSAVMMEQGQ 226
Query: 199 ---QKQNNQTTKPTHPDQCISSDI-------------YANSIVALDIDSGRIAWAKPLGG 242
Q++ +Q T T D+ DI Y ++ ALD+ SG+I W + +G
Sbjct: 227 LIWQQRISQVTGATEIDRLNDIDITPVVVDGVVYALAYNGNLTALDLRSGQILWKREIGS 286
Query: 243 YDIF 246
+ F
Sbjct: 287 VNDF 290
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL 76
DI TP V +GVVY ++NG L A++ +G ++W++ +
Sbjct: 247 DIDITPVVVDGVVYALAYNGNLTALDLRSGQILWKREI 284
>sp|F7XXL0|BAMB_MOREP Outer membrane protein assembly factor BamB OS=Moranella endobia
(strain PCIT) GN=bamB PE=3 SV=1
Length = 388
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 10 NRRYAYGEVL-INPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNG 68
NR Y E+ + + + L W + + P V++GV+ + NG L A+N +G
Sbjct: 117 NRIYVASELAKVYAMEAKCGSLAWEVLVAGETLSPPVVSDGVILIHTSNGMLQALNEADG 176
Query: 69 ALIWEQNL-SKLTGLSGTGI--------VVNVTVAVVVAVSRSNGELVWSTQIDPR---- 115
AL W NL +K+ + G +V +V AV + G+++W +I
Sbjct: 177 ALKWTVNLEAKMLNIRGGSTPTTACGTAIVGSDNGLVSAVMLNIGQIIWQQRISQTGGVT 236
Query: 116 --PRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ------ 167
R + V + + L+ + G+LA LD+ +G+++W
Sbjct: 237 EIARINDVQATPVVVNGYVYALA-------------YNGNLAALDLFSGKLMWSREIGSF 283
Query: 168 TYMLPDNG 175
T ML +NG
Sbjct: 284 TNMLVENG 291
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG-LSGTGIVVNVTV-AVV 96
D+ ATP V NG VY ++NG L A++ F+G L+W + + T L GI+ V V
Sbjct: 243 DVQATPVVVNGYVYALAYNGNLAALDLFSGKLMWSREIGSFTNMLVENGIIYLVDQNDRV 302
Query: 97 VAVSRSNGELVW 108
+AV NG W
Sbjct: 303 IAVDAKNGITSW 314
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 68/261 (26%)
Query: 32 WSFYAGKD-------ISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG--- 81
WS+Y G + + P V N V+ + G + A++A +G +W ++LS TG
Sbjct: 42 WSYYIGSNNGGGDFYSNLQPTVQNTRVFVANRYGLVKALDADSGKELWAKDLSIYTGCFS 101
Query: 82 ------LSG------TGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMG 129
LSG I V +A V A+ G L W + S +S V +
Sbjct: 102 RNRPAQLSGGVTAVGNRIYVASELAKVYAMEAKCGSLAWEVLVAGETLSPPVVSDGVILI 161
Query: 130 AFYVG-LSSLEEA---------------------LPADQCCTF-----RGSLAKLDVRNG 162
G L +L EA P C T G ++ + + G
Sbjct: 162 HTSNGMLQALNEADGALKWTVNLEAKMLNIRGGSTPTTACGTAIVGSDNGLVSAVMLNIG 221
Query: 163 RIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYAN 222
+IIWQ + + GG + A + N+ P + + + Y
Sbjct: 222 QIIWQQRI-----SQTGGVTEIA--------------RINDVQATPVVVNGYVYALAYNG 262
Query: 223 SIVALDIDSGRIAWAKPLGGY 243
++ ALD+ SG++ W++ +G +
Sbjct: 263 NLAALDLFSGKLMWSREIGSF 283
>sp|Q8EC35|BAMB_SHEON Outer membrane protein assembly factor BamB OS=Shewanella
oneidensis (strain MR-1) GN=bamB PE=3 SV=1
Length = 395
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 10 NRRYAYGEV-LINPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNG 68
N+ + GE L+ + + ++ W AG ++ + P VA+ VV + +G L A N G
Sbjct: 122 NKLFIGGESGLLAALNAEDGQVLWHVIAGGELLSKPTVADDVVVVSTSSGSLEAYNVDTG 181
Query: 69 ALIW--EQNLSKLTGLSGT--------GIVVNVTVAVVVAVSRSNGELVWSTQI-DPRPR 117
A +W + L LT L GT G + V V ++NG+ W I +P
Sbjct: 182 AKLWVYDMQLPNLT-LRGTGSAAYEAGGFFIGTADGKVAVVVKNNGQAAWEQAIYNPTGG 240
Query: 118 SQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGK 177
++ T V M +G + L A ++ G+L +++R GRIIW N
Sbjct: 241 NEFTRMADVDMTPLILG-----DNLYA---VSYNGNLVSMELRTGRIIWTRKYSSFNELT 292
Query: 178 RGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230
G S V S V RR + S ++Y + +V D +
Sbjct: 293 TAGLSLFLVDDHSRIYSVDRRNGLELWSNSELVNRTLTSPEVYKDYLVVGDFE 345
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 9 NNRRYAYGEVLINPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNG 68
NN + A+ + + NP F D+ TP + +Y S+NG L ++ G
Sbjct: 224 NNGQAAWEQAIYNPTGGNE------FTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTG 277
Query: 69 ALIWEQNLSKLTGLSGTGIVVNVT--VAVVVAVSRSNGELVWS 109
+IW + S L+ G+ + + + + +V R NG +WS
Sbjct: 278 RIIWTRKYSSFNELTTAGLSLFLVDDHSRIYSVDRRNGLELWS 320
>sp|E4PKG3|BAMB_MARAH Outer membrane protein assembly factor BamB OS=Marinobacter
adhaerens (strain HP15) GN=bamB PE=3 SV=1
Length = 390
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 44 PAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK--LTGLSGTGIVVNVTV--AVVVAV 99
P V ++Y S +G LYAV G + WE +GL G G + +T A +VA+
Sbjct: 68 PLVTGDLIYAASADGELYAVATETGEVAWESEFEDRIFSGLGGDGQNLYLTTENADLVAL 127
Query: 100 SRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDV 159
SR +G VW T + S +GS+ + G A ++ + GS+ L +
Sbjct: 128 SREDGSEVWRTSLPTEVLSSPQSNGSLVVAQTTDGKVLGFSATDGEKLWQYDGSVPVLSM 187
Query: 160 R 160
R
Sbjct: 188 R 188
>sp|P54741|AFSK_STRCO Serine/threonine-protein kinase AfsK OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=afsK PE=1 SV=2
Length = 799
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 31 RWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWE 73
+W F AG DI PAVA G ++F S + LY + A +G L W+
Sbjct: 715 KWRFQAGGDIVGAPAVAEGRIHFGSSDHLLYTLKADDGRLRWK 757
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 29 RLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNG 68
RLRW G +I+ +P V +G+VY S + +YA++A G
Sbjct: 753 RLRWKLATGGEITGSPVVRDGIVYACSKDRCVYALDAEKG 792
>sp|Q4L235|ACSF4_HUMAN Acyl-CoA synthetase family member 4 OS=Homo sapiens GN=AASDH PE=1
SV=3
Length = 1098
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 27 NLRLRWSFYAGKDISATPAV-------ANGVVYFPSWNGYLYAVNAFNGALIWEQNL--- 76
L +RW GK + A+P V ++ VY S + + AV+ ++G + WEQ L
Sbjct: 754 ELHVRWRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDR 813
Query: 77 ---SKLTGLSGTGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM---SGSVYMGA 130
S G IVV +V + ++GE W + +S TM +G +Y+G+
Sbjct: 814 IESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGLIYIGS 873
>sp|P15877|DHG_ECOLI Quinoprotein glucose dehydrogenase OS=Escherichia coli (strain K12)
GN=gcd PE=1 SV=3
Length = 796
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 216 SSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLL 275
+ YA+SI+AL+ +G++AW+ +D++ D D P L
Sbjct: 435 EQERYASSILALNATTGKLAWSYQTVHHDLW------------------DMDLPAQPTLA 476
Query: 276 TISTNGRFRDVVVAVQKSGFAWAFDRDSGDII 307
I+ NG+ V+ A K+G + DR +G+++
Sbjct: 477 DITVNGQKVPVIYAPAKTGNIFVLDRRNGELV 508
>sp|F5ZAY7|BAMB_ALTSS Outer membrane protein assembly factor BamB OS=Alteromonas sp.
(strain SN2) GN=bamB PE=3 SV=2
Length = 418
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLS--GTGIVVNVTVAVV 96
D+ TP + G +Y S+NG L AV +G +IW++ LS G I V + +
Sbjct: 267 DLDTTPVLFGGTIYTVSYNGTLAAVELRSGRIIWKREYGSYRNLSIEGNSIFVVDNNSNI 326
Query: 97 VAVSRSNGELVWS 109
A+ R NG +WS
Sbjct: 327 YALDRRNGVELWS 339
>sp|Q9KTW8|BAMB_VIBCH Outer membrane protein assembly factor BamB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=bamB PE=3 SV=1
Length = 386
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLS--GTGIVVNVTVAVV 96
D+ A+P V G ++ +NG L A++ +G IW++N S T ++ G+ + + +
Sbjct: 238 DVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHL 297
Query: 97 VAVSRSNGELVWS-TQIDPR 115
VAV +G +WS TQ++ R
Sbjct: 298 VAVDTRSGTELWSNTQLEHR 317
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWE-----QNL-----SKLTG 81
W+ ++ A PA N +V + G L A+N +GA W NL S+ T
Sbjct: 135 WASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTA 194
Query: 82 LSGTGIVVNVTVAVVVAVSRSNGELVWSTQI-DPRPRSQITMSGSVYMGAFYVGLSSLEE 140
++G G+ + A G+L+W + P+ ++I V +G +
Sbjct: 195 VAG-GVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLF-- 251
Query: 141 ALPADQCCTFRGSLAKLDVRNGRIIWQ 167
F G L +D+R+G+ IW+
Sbjct: 252 ------TVGFNGQLIAIDLRSGQPIWK 272
>sp|Q9HXJ7|BAMB_PSEAE Outer membrane protein assembly factor BamB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=bamB PE=3 SV=1
Length = 380
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 29 RLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIW--EQNLSKLTGLSGTG 86
+ +W+ ++ + PA VV + + L ++A +G W E + LT L GTG
Sbjct: 127 KKKWTKRVNSEVLSAPATNGDVVVVQTQDDKLIGLDAASGDQRWIYESTVPVLT-LRGTG 185
Query: 87 ---IVVNVTVA-----VVVAVSRSNGELVWSTQID-PRPRSQITMSGSVYMGAFYVGLSS 137
I N+ +A VVAV G +W ++ P+ RS++ + G G +
Sbjct: 186 APLIAGNMALAGLASGKVVAVDVQRGLPIWEQRVAIPQGRSELDRVVDIDGGLLLSGDTL 245
Query: 138 LEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167
+++G A LDV +GR++WQ
Sbjct: 246 Y--------VVSYQGRAAALDVNSGRLLWQ 267
>sp|Q5X521|BAMB_LEGPA Outer membrane protein assembly factor BamB OS=Legionella
pneumophila (strain Paris) GN=bamB PE=3 SV=1
Length = 384
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 36/155 (23%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL---SKLTGLSGTGIV 88
W ++ A PA+++ V + +G +YA++A NG +W + S + S + I+
Sbjct: 135 WQNKVSAEVLAPPAISHQKVIAKTIDGKVYAIDAVNGKQLWVADHGAPSLVLKASSSPII 194
Query: 89 VNVTVAV------VVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEAL 142
V+ V V + A+ G L+W I A+ G S +E +
Sbjct: 195 VDDLVLVGFSDGKLDALELQTGRLIWQRSI-----------------AYGTGASDVERLV 237
Query: 143 PADQ----------CCTFRGSLAKLDVRNGRIIWQ 167
D T++G + L + NG+ IW+
Sbjct: 238 DIDSDPIISNNVAYLATYQGYVGALSLSNGQFIWR 272
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 19/154 (12%)
Query: 19 LINPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK 78
L+ V ++ +++WS +I + P VA G V + L +N +G IW+ +S
Sbjct: 82 LVQAVNRKDGQIKWSTALKNNIVSGPTVAAGYVAVGTNASTLVLLNQSDGKEIWQNKVSA 141
Query: 79 LT----GLSGTGIVVNVTVAVVVAVSRSNGELVW-STQIDPRPRSQITMSGSVYMGAFYV 133
+S ++ V A+ NG+ +W + P + + S + V
Sbjct: 142 EVLAPPAISHQKVIAKTIDGKVYAIDAVNGKQLWVADHGAPSLVLKASSSPIIVDDLVLV 201
Query: 134 GLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167
G S G L L+++ GR+IWQ
Sbjct: 202 GFSD--------------GKLDALELQTGRLIWQ 221
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQ 74
DI + P ++N V Y ++ GY+ A++ NG IW +
Sbjct: 238 DIDSDPIISNNVAYLATYQGYVGALSLSNGQFIWRK 273
>sp|C7R5S3|BAMB_KANKD Outer membrane protein assembly factor BamB OS=Kangiella koreensis
(strain DSM 16069 / KCTC 12182 / SW-125) GN=bamB PE=3
SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL--SGTGIVVNVTVAVV 96
D+ +TP V + +Y +NG+ A++ NG +W ++ S L + + T +
Sbjct: 234 DVDSTPVVYSNYLYAAGFNGFAIAMDLTNGRYLWREDASVTEELLVDARRVYLVDTKGRI 293
Query: 97 VAVSRSNGELVWSTQ 111
VA+ R GE VW+ +
Sbjct: 294 VALDRITGEEVWTQE 308
>sp|P38539|DHM1_METME Methanol dehydrogenase [cytochrome c] subunit 1 OS=Methylophilus
methylotrophus PE=1 SV=2
Length = 573
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 20 INPVTVRNLRLRWSFYAG--KDISATPAVANGVVYFPS-WNGYLYAVNAFN-GALIWEQN 75
IN V+N++ WSF G P V ++Y S + YA+N + G ++W+
Sbjct: 34 INKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHK 93
Query: 76 LSKLT-------------GLS-GTGIVVNVTV-AVVVAVSRSNGELVWSTQI-DPRPRSQ 119
+ GL+ G G +V ++A+ G++ W ++ DP+ S
Sbjct: 94 PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGST 153
Query: 120 ITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169
+T + V +G S E + RG++ D++ G + W+ +
Sbjct: 154 LTQAPFVAKDTVLMGCSGAELGV--------RGAVNAFDLKTGELKWRAF 195
>sp|C3MAS0|ACSA_RHISN Acetyl-coenzyme A synthetase OS=Rhizobium sp. (strain NGR234)
GN=acsA PE=3 SV=1
Length = 649
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG + AID+ RQ +
Sbjct: 171 GRIVDCESTFVITCDEGLRGGKPVPLKENTEKAIDIAARQH------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G++ WA G D++Y + P CPP + E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVPWAP---GRDVWYHQEIATVEPHCPP----EKMRAEDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD GDI W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGDIYW 302
>sp|Q5E769|BAMB_VIBF1 Outer membrane protein assembly factor BamB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=bamB PE=3 SV=1
Length = 385
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTG--IVVNVTVAVV 96
D+ A+P + +Y +NG L A++ G +W++N S +S G + + V
Sbjct: 238 DVDASPLILGSRLYTVGYNGQLIALDLRTGQPVWKRNYSSAMNMSSDGKRLFLVTEKDHV 297
Query: 97 VAVSRSNGELVWSTQ 111
VAV +G +WS +
Sbjct: 298 VAVDARSGTELWSNE 312
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 52/230 (22%)
Query: 43 TPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNL-----SKLTG---LSGTGIVVNVTVA 94
TP A +Y S +G + A++ NG IWE++L ++L+G L+ + +
Sbjct: 62 TPVYAYQKIYVASRDGLVKALDPENGKTIWERDLEQDDTARLSGGLTLTYGKVFIGSENG 121
Query: 95 VVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSL 154
++ + GE +W ++D ++ M T RG+L
Sbjct: 122 ELITLDAETGEELWREKVDGEVLAKPLADEGYVM------------------VHTSRGAL 163
Query: 155 AKLDVRNGRIIWQTYMLPDNGGKRG-----GYSGAAVWGSS---PAIDVIRR-----QKQ 201
D G WQ N RG SG WG S A +I + Q+
Sbjct: 164 IAFDAETGVEQWQINSEVPNLTLRGDSAPVSISGGVFWGMSNGRLAAALISKGQLLWQQP 223
Query: 202 NNQTTKPTHPDQCISSDI-------------YANSIVALDIDSGRIAWAK 238
T D+ + D Y ++ALD+ +G+ W +
Sbjct: 224 VGTPKGATEIDRLVDVDASPLILGSRLYTVGYNGQLIALDLRTGQPVWKR 273
>sp|Q0A984|BAMB_ALHEH Outer membrane protein assembly factor BamB OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=bamB PE=3 SV=1
Length = 383
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 39 DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVT--VAVV 96
D+ A P V GV Y ++ G L AV +G W +++ TG++ + V + +
Sbjct: 234 DLHADPLVFRGVAYAQAYQGELAAVGMGDGRERWSRDIPGHTGMAADSRQLYVVDDQSRL 293
Query: 97 VAVSRSNGELVW 108
A+ R+NG VW
Sbjct: 294 WALDRNNGATVW 305
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 18/146 (12%)
Query: 31 RWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLS----KLTGLSGTG 86
RW +I A P +A +V S +G +Y ++ G +W + S L G S
Sbjct: 130 RWVSGLSSEILAVPQIARNIVVARSGDGRVYGLDGLTGRRLWIHDRSVPVLTLRGSSSPV 189
Query: 87 IVVNVTVAV-----VVAVSRSNGELVWSTQID-PRPRSQITMSGSVYMGAFYVGLSSLEE 140
+V N V +V ++ +GE++W + PR RS + ++ + +
Sbjct: 190 VVGNRVVVGQDNGRLVTLNLQDGEVIWEAPVSIPRGRSDLERMVDLHADPLVFRGVAYAQ 249
Query: 141 ALPADQCCTFRGSLAKLDVRNGRIIW 166
A ++G LA + + +GR W
Sbjct: 250 A--------YQGELAAVGMGDGRERW 267
>sp|G4Q9J6|BAMB_TAYAM Outer membrane protein assembly factor BamB OS=Taylorella
asinigenitalis (strain MCE3) GN=bamB PE=3 SV=1
Length = 384
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 9 NNRRYAYGEVL-INPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFN 67
N RR+ ++ I V N + S +G P A+ ++ + +G + VNA N
Sbjct: 27 NERRFEPAKLADIKQSIVVNTVWQTSIGSGGSAGFAPVYADNSIFAATPDGTVVRVNAEN 86
Query: 68 GALIWEQNL-SKLTGLSGTG---IVVNVTVAVVVAVSRSNGELVWSTQI 112
G + W L +KLT G G ++V A A++ GE VW T++
Sbjct: 87 GNIAWSTKLDTKLTSGVGVGDGLVIVTDRKAKAYALNAQTGEKVWDTEL 135
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 23 VTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL 82
V N + WS +++ V +G+V YA+NA G +W+ LS ++ +
Sbjct: 82 VNAENGNIAWSTKLDTKLTSGVGVGDGLVIVTDRKAKAYALNAQTGEKVWDTELSTISTM 141
Query: 83 ---SGTG-IVVNVTVAVVVAVSRSNGELVWS 109
+G G ++V V A +G+L WS
Sbjct: 142 PPIAGFGKVIVRADDFRVQAFDSKDGKLHWS 172
>sp|B9JV43|ACSA_AGRVS Acetyl-coenzyme A synthetase OS=Agrobacterium vitis (strain S4 /
ATCC BAA-846) GN=acsA PE=3 SV=1
Length = 651
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITCDEGVRGGKPVALKENTDVAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G++ WA G D++Y + PDCPP + A E P+ L T
Sbjct: 213 IVNKVLVVRRTGGKVGWAP---GRDLWYHQEIAKVKPDCPP-VKMKA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAAMTHEYVFDYKDGEIFW 302
>sp|Q63UT0|BAMB_BURPS Outer membrane protein assembly factor BamB OS=Burkholderia
pseudomallei (strain K96243) GN=bamB PE=3 SV=1
Length = 381
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 21/148 (14%)
Query: 32 WSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWE-------QNLSKLTGLSG 84
W +I + P V NG+V + +G + A A G W NL G++
Sbjct: 130 WKATVQGEIFSPPLVGNGLVIVRTIDGQVIAFAAQTGEQKWTYRNRAVPLNLRVSAGMTF 189
Query: 85 TG---IVVNVTVAVVVAVSRSNGELVWSTQID-PRPRSQITMSGSVYMGAFYVGLSSLEE 140
G ++ +VA++ GE W T + P+ +++ V VG
Sbjct: 190 AGDAAVLAGFPGGGLVALNLQTGEPFWQTPVSFPKGVTEVERINDVTGAPTLVG------ 243
Query: 141 ALPADQCC-TFRGSLAKLDVRNGRIIWQ 167
A+ C TF+G L D +GR +W+
Sbjct: 244 ---AETCAVTFQGQLGCFDANSGRPLWE 268
>sp|Q92KX2|ACSA2_RHIME Acetyl-coenzyme A synthetase 2 OS=Rhizobium meliloti (strain 1021)
GN=acsA2 PE=3 SV=1
Length = 649
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ RQ +
Sbjct: 171 GRIVDCESTFVITCDEGVRGGKPVALKENTDTAIDIAARQH------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
+ ++ + G++ WA G D++Y P CPP ++A E P+ L T
Sbjct: 213 TVSKVLVVRRTGGKVGWAP---GRDLWYHQETAAAEPHCPP-EKMNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD GDI W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYQDGDIYW 302
>sp|P42111|YXAL_BACSU Uncharacterized protein YxaL OS=Bacillus subtilis (strain 168)
GN=yxaL PE=1 SV=3
Length = 410
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 20 INPVTVRNLRLRWSFYAGKDISATPAVA-NGVVYFPSWNGYLYAVNAFNGALIWEQNLS 77
I P + RW +S+ P +A NG VY ++N YA+N+ G + W + S
Sbjct: 204 IKPTSKSTWTERWKLKTNGVVSSVPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTTS 262
>sp|Q8FYQ3|ACSA_BRUSU Acetyl-coenzyme A synthetase OS=Brucella suis biovar 1 (strain
1330) GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|A9WWT6|ACSA_BRUSI Acetyl-coenzyme A synthetase OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|A9M849|ACSA_BRUC2 Acetyl-coenzyme A synthetase OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|Q57B76|ACSA_BRUAB Acetyl-coenzyme A synthetase OS=Brucella abortus biovar 1 (strain
9-941) GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|Q2YLH5|ACSA_BRUA2 Acetyl-coenzyme A synthetase OS=Brucella abortus (strain 2308)
GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|B2S7N5|ACSA_BRUA1 Acetyl-coenzyme A synthetase OS=Brucella abortus (strain S19)
GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|A5VSF3|ACSA_BRUO2 Acetyl-coenzyme A synthetase OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=acsA PE=3 SV=1
Length = 651
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|Q8YJ48|ACSA_BRUME Acetyl-coenzyme A synthetase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=acsA PE=3 SV=2
Length = 651
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|C0RF62|ACSA_BRUMB Acetyl-coenzyme A synthetase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=acsA PE=3 SV=1
Length = 651
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG A + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITADEGVRGGKPVALKENTDTAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+++W + G D++Y + P C P P ++A E P+ L T
Sbjct: 213 MVNKVLVVRRTGGKVSWGR---GRDLWYHQEVASVEPHCEPEP-MNA---EDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G+I W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYASMTHQYVFDYHDGEIYW 302
>sp|Q9Z4J7|EXAA_PSEAE Quinoprotein ethanol dehydrogenase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=exaA PE=1 SV=1
Length = 623
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 63/324 (19%), Positives = 109/324 (33%), Gaps = 38/324 (11%)
Query: 20 INPVTVRNLRLRWSFYAGKDI----SATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQN 75
+N V L WS+ G + + V++GV+Y + L+A++A G +W N
Sbjct: 70 VNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYN 129
Query: 76 -------------LSKLTGLSGTGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM 122
+++ + G + A VVA++++ G++VW +
Sbjct: 130 HRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMT 189
Query: 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYS 182
+ G L D+ G L D G IW + + G+ G
Sbjct: 190 GAPTIVKDGKTGKVLLIHGSSGDEFGVV-GRLFARDPDTGEEIWMRPFVEGHMGRLNGKD 248
Query: 183 GAAVWGSSPAIDVIRRQKQNNQTTKPTH----PDQCISSDIYANSIVALDIDSGRI-AWA 237
R + +H P Q S D N+I+ + G WA
Sbjct: 249 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 308
Query: 238 KPLGG-----YDIFYFTCLVPNNPDC-------PPGPNLDADFG---EAPMLLTISTNGR 282
+ G YD Y + V +P PN DF E + + +G+
Sbjct: 309 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGK 368
Query: 283 FRDVVVAVQKSGFAWAFDRDSGDI 306
++GF + DR +G +
Sbjct: 369 IVKATAHADRNGFFYVVDRSNGKL 392
>sp|Q80WC9|ACSF4_MOUSE Acyl-CoA synthetase family member 4 OS=Mus musculus GN=Aasdh PE=2
SV=1
Length = 1100
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 28 LRLRWSFYAGKDISATPAVANG--------VVYFPSWNGYLYAVNAFNGALIWEQNL--- 76
LR RW GK + A+P + VY S + + AV+ +G WEQ L
Sbjct: 753 LRERWRSDTGKCVDASPLLVRAAVQDKPSTTVYIGSHSHTVKAVDLSSGETRWEQLLGDR 812
Query: 77 ---SKLTGLSGTGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM---SGSVYMGA 130
S G IVV +V + ++GE W+ + +S + +G +Y+G+
Sbjct: 813 IESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGS 872
>sp|A6MMB2|RPOC2_CHLSC DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus
GN=rpoC2 PE=3 SV=1
Length = 1389
Score = 32.3 bits (72), Expect = 6.7, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 100 SRSNGELVWSTQID-------------PRPRSQITMSGSVYMGAFY-VGLSSLEEALPAD 145
S S GE+ WST + P+ +SGS Y + L ++ +
Sbjct: 441 SDSEGEMHWSTDVYHASEYTYGNVHLLPKTSHLWILSGSPYRSSIVPFSLHKDQDQMNVH 500
Query: 146 QCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGG---YSG 183
RGS++ L V N R+ + + +G KRGG YSG
Sbjct: 501 SLSVERGSISDLSVTNDRVRHKLFSSDLSGKKRGGILDYSG 541
>sp|Q8UBV5|ACSA_AGRT5 Acetyl-coenzyme A synthetase OS=Agrobacterium tumefaciens (strain
C58 / ATCC 33970) GN=acsA PE=3 SV=2
Length = 651
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 35/157 (22%)
Query: 162 GRII--WQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDI 219
GRI+ T+++ + G RGG + AID+ +Q +
Sbjct: 171 GRIVDCESTFVITCDEGVRGGKPIPLKENTDKAIDIAAKQY------------------V 212
Query: 220 YANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM--LLTI 277
N ++ + G+ WA G DI+Y + PDCPP E P+ L T
Sbjct: 213 IVNKVLVVRRTGGKTGWAP---GRDIWYHQEIATVKPDCPPVKMR----AEDPLFILYTS 265
Query: 278 STNGRFRDVV------VAVQKSGFAWAFDRDSGDIIW 308
+ G+ + V+ + + FD G++ W
Sbjct: 266 GSTGKPKGVLHTTGGYLVYTSMTHEYVFDYKDGEVFW 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,353,508
Number of Sequences: 539616
Number of extensions: 8297960
Number of successful extensions: 16147
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 15904
Number of HSP's gapped (non-prelim): 206
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)