Query 039692
Match_columns 417
No_of_seqs 186 out of 1958
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03075 PQQ_enz_alc_DH PQQ-d 100.0 1.1E-43 2.4E-48 363.4 37.5 362 1-391 21-520 (527)
2 cd00216 PQQ_DH Dehydrogenases 100.0 1.1E-42 2.3E-47 355.2 38.8 391 1-416 13-488 (488)
3 TIGR03074 PQQ_membr_DH membran 100.0 7.4E-40 1.6E-44 343.7 41.6 287 1-311 138-486 (764)
4 PRK11138 outer membrane biogen 100.0 3.5E-36 7.7E-41 300.3 32.2 310 13-393 32-384 (394)
5 TIGR03300 assembly_YfgL outer 100.0 1.3E-34 2.9E-39 287.4 32.2 300 26-393 38-369 (377)
6 PRK11138 outer membrane biogen 100.0 6.7E-33 1.5E-37 276.7 27.1 280 19-372 80-386 (394)
7 TIGR03300 assembly_YfgL outer 100.0 6E-31 1.3E-35 261.2 27.1 280 19-372 76-371 (377)
8 COG4993 Gcd Glucose dehydrogen 100.0 2.1E-30 4.5E-35 253.9 22.5 285 1-309 158-495 (773)
9 cd00216 PQQ_DH Dehydrogenases 100.0 4E-29 8.6E-34 255.4 26.2 319 18-375 71-461 (488)
10 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.9 1.6E-24 3.6E-29 222.1 29.7 336 19-373 80-525 (527)
11 PF13360 PQQ_2: PQQ-like domai 99.9 6.4E-24 1.4E-28 196.8 21.2 224 19-310 4-238 (238)
12 KOG4649 PQQ (pyrrolo-quinoline 99.9 8.6E-23 1.9E-27 181.9 21.7 238 30-348 1-258 (354)
13 TIGR03074 PQQ_membr_DH membran 99.9 2.4E-21 5.1E-26 204.3 26.6 271 16-313 268-721 (764)
14 COG1520 FOG: WD40-like repeat 99.9 1.5E-20 3.4E-25 186.1 28.0 230 20-313 35-279 (370)
15 PF13360 PQQ_2: PQQ-like domai 99.9 1.6E-20 3.6E-25 173.9 22.0 224 57-346 2-238 (238)
16 COG1520 FOG: WD40-like repeat 99.8 1.3E-17 2.7E-22 165.3 23.8 266 19-347 79-362 (370)
17 KOG4649 PQQ (pyrrolo-quinoline 99.7 2.5E-15 5.4E-20 134.5 21.5 215 20-313 35-259 (354)
18 COG4993 Gcd Glucose dehydrogen 99.5 1E-12 2.2E-17 130.3 21.0 206 20-241 226-499 (773)
19 PF13570 PQQ_3: PQQ-like domai 98.6 7.6E-08 1.7E-12 63.0 4.8 40 28-67 1-40 (40)
20 PF01011 PQQ: PQQ enzyme repea 98.4 5.6E-07 1.2E-11 58.1 4.9 36 49-84 1-36 (38)
21 PF13570 PQQ_3: PQQ-like domai 98.3 1.5E-06 3.2E-11 56.8 4.8 40 104-161 1-40 (40)
22 smart00564 PQQ beta-propeller 97.9 1.6E-05 3.6E-10 49.3 4.5 31 45-75 3-33 (33)
23 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0049 1.1E-07 60.2 23.4 112 44-170 8-146 (352)
24 PF01011 PQQ: PQQ enzyme repea 97.9 2.9E-05 6.3E-10 50.0 4.8 28 286-313 2-29 (38)
25 cd00200 WD40 WD40 domain, foun 97.7 0.017 3.8E-07 52.7 22.0 190 48-311 21-216 (289)
26 PF05567 Neisseria_PilC: Neiss 97.5 0.00015 3.3E-09 70.6 6.5 61 220-303 179-240 (335)
27 smart00564 PQQ beta-propeller 97.5 0.00018 3.9E-09 44.5 4.4 30 126-169 4-33 (33)
28 PF14269 Arylsulfotran_2: Aryl 97.4 0.018 3.9E-07 55.3 18.9 69 219-312 229-298 (299)
29 cd00200 WD40 WD40 domain, foun 97.4 0.082 1.8E-06 48.2 22.7 189 49-311 64-258 (289)
30 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.14 3.1E-06 48.0 27.0 104 50-169 2-112 (300)
31 PF14269 Arylsulfotran_2: Aryl 97.0 0.15 3.3E-06 48.9 20.3 86 151-241 95-184 (299)
32 PF02239 Cytochrom_D1: Cytochr 96.9 0.11 2.4E-06 51.5 19.0 90 20-113 18-119 (369)
33 KOG0316 Conserved WD40 repeat- 96.9 0.022 4.8E-07 51.4 12.1 191 47-313 70-268 (307)
34 PF05096 Glu_cyclase_2: Glutam 96.9 0.024 5.1E-07 52.8 12.8 151 47-241 54-214 (264)
35 KOG1539 WD repeat protein [Gen 96.8 0.28 6.1E-06 51.7 21.1 185 47-311 85-284 (910)
36 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.16 3.5E-06 49.7 18.6 120 94-242 27-148 (352)
37 PF05935 Arylsulfotrans: Aryls 96.7 0.025 5.4E-07 58.1 13.3 164 57-242 127-313 (477)
38 TIGR03866 PQQ_ABC_repeats PQQ- 96.7 0.58 1.3E-05 43.8 26.1 131 20-168 13-153 (300)
39 PF08450 SGL: SMP-30/Gluconola 96.6 0.41 8.9E-06 44.3 19.7 112 43-167 4-129 (246)
40 KOG0296 Angio-associated migra 96.6 0.64 1.4E-05 44.7 20.4 150 94-312 212-366 (399)
41 PF06433 Me-amine-dh_H: Methyl 96.5 0.18 3.9E-06 48.6 16.2 233 49-350 3-278 (342)
42 PF05935 Arylsulfotrans: Aryls 96.4 0.047 1E-06 56.1 13.1 179 94-313 128-312 (477)
43 COG3419 PilY1 Tfp pilus assemb 96.3 0.15 3.2E-06 55.4 16.1 63 330-396 773-840 (1036)
44 PF02239 Cytochrom_D1: Cytochr 96.3 0.42 9.1E-06 47.4 18.5 107 49-171 6-119 (369)
45 KOG0296 Angio-associated migra 95.9 1.7 3.8E-05 41.8 21.8 261 47-371 116-389 (399)
46 PF05567 Neisseria_PilC: Neiss 95.7 0.071 1.5E-06 52.0 9.9 37 120-170 5-46 (335)
47 PF05096 Glu_cyclase_2: Glutam 95.7 0.68 1.5E-05 43.2 15.6 144 94-312 68-213 (264)
48 KOG1539 WD repeat protein [Gen 95.6 3.9 8.4E-05 43.6 23.3 228 46-347 43-284 (910)
49 PF09910 DUF2139: Uncharacteri 95.2 0.89 1.9E-05 42.8 14.3 95 55-165 75-186 (339)
50 PTZ00421 coronin; Provisional 94.7 6.1 0.00013 40.8 21.0 106 49-170 89-208 (493)
51 KOG0275 Conserved WD40 repeat- 94.6 0.78 1.7E-05 43.4 12.5 233 11-312 219-477 (508)
52 PF06433 Me-amine-dh_H: Methyl 94.6 4.2 9.2E-05 39.4 17.9 232 20-312 69-330 (342)
53 KOG0646 WD40 repeat protein [G 94.6 3.3 7.1E-05 41.2 17.2 61 212-303 188-248 (476)
54 KOG0278 Serine/threonine kinas 94.3 1.5 3.3E-05 40.3 13.3 143 46-244 152-302 (334)
55 COG3823 Glutamine cyclotransfe 94.3 0.34 7.3E-06 43.3 8.8 157 41-241 48-215 (262)
56 KOG2048 WD40 repeat protein [G 94.2 2.9 6.3E-05 43.4 16.4 197 48-312 80-285 (691)
57 KOG0278 Serine/threonine kinas 93.8 1.8 4E-05 39.7 12.8 134 94-313 165-299 (334)
58 KOG2103 Uncharacterized conser 93.6 1.3 2.7E-05 47.1 13.0 85 28-114 24-115 (910)
59 KOG2048 WD40 repeat protein [G 93.3 5.2 0.00011 41.6 16.4 167 151-373 89-268 (691)
60 PF09910 DUF2139: Uncharacteri 92.3 10 0.00022 35.9 18.5 67 94-170 78-149 (339)
61 KOG4693 Uncharacterized conser 92.1 10 0.00022 35.3 17.2 44 294-339 216-260 (392)
62 KOG1446 Histone H3 (Lys4) meth 91.2 14 0.0003 35.1 23.3 96 49-160 27-130 (311)
63 KOG2103 Uncharacterized conser 90.9 0.98 2.1E-05 47.9 8.3 85 284-369 47-133 (910)
64 PLN00181 protein SPA1-RELATED; 90.8 29 0.00063 38.1 22.8 99 48-164 545-652 (793)
65 PHA02713 hypothetical protein; 90.6 25 0.00053 37.0 18.8 62 94-168 320-381 (557)
66 PF14583 Pectate_lyase22: Olig 90.4 10 0.00023 37.5 14.5 105 57-165 59-181 (386)
67 KOG4441 Proteins containing BT 90.4 8.3 0.00018 40.6 14.9 108 285-396 333-486 (571)
68 KOG0316 Conserved WD40 repeat- 90.2 0.92 2E-05 41.3 6.4 111 45-170 152-267 (307)
69 COG4946 Uncharacterized protei 89.9 22 0.00048 35.8 16.2 74 29-106 206-299 (668)
70 KOG2055 WD40 repeat protein [G 89.7 24 0.00052 35.4 16.3 145 94-310 237-382 (514)
71 KOG4441 Proteins containing BT 88.0 28 0.0006 36.7 16.7 97 58-170 301-412 (571)
72 KOG1027 Serine/threonine prote 87.5 3.8 8.3E-05 44.0 9.8 179 49-313 28-212 (903)
73 TIGR03548 mutarot_permut cycli 87.5 28 0.00061 33.5 23.3 64 94-168 88-153 (323)
74 KOG0286 G-protein beta subunit 87.2 27 0.00059 33.0 21.0 225 50-347 69-303 (343)
75 KOG0643 Translation initiation 86.8 27 0.00059 32.7 17.9 28 284-311 159-186 (327)
76 COG3823 Glutamine cyclotransfe 86.8 5.8 0.00012 35.7 9.0 129 20-171 70-215 (262)
77 PLN00181 protein SPA1-RELATED; 86.5 56 0.0012 35.9 22.9 192 49-301 589-792 (793)
78 KOG0649 WD40 repeat protein [G 84.9 5.6 0.00012 36.5 8.2 103 52-170 75-196 (325)
79 KOG3881 Uncharacterized conser 84.6 43 0.00093 32.9 14.9 203 46-310 113-328 (412)
80 PHA02713 hypothetical protein; 83.8 29 0.00063 36.4 14.4 70 295-368 321-404 (557)
81 KOG0318 WD40 repeat stress pro 83.4 39 0.00084 34.6 14.0 141 151-348 211-351 (603)
82 COG3419 PilY1 Tfp pilus assemb 83.4 7.5 0.00016 42.8 9.8 91 214-313 584-684 (1036)
83 KOG1027 Serine/threonine prote 83.3 4.1 8.9E-05 43.8 7.7 112 41-171 99-212 (903)
84 KOG0295 WD40 repeat-containing 83.3 47 0.001 32.4 14.6 68 214-311 306-373 (406)
85 KOG0646 WD40 repeat protein [G 83.0 16 0.00034 36.6 11.0 126 215-373 96-240 (476)
86 KOG0291 WD40-repeat-containing 82.4 75 0.0016 34.1 16.8 95 13-109 358-473 (893)
87 PTZ00420 coronin; Provisional 81.7 74 0.0016 33.5 19.2 104 49-169 88-206 (568)
88 PHA02790 Kelch-like protein; P 81.5 64 0.0014 33.1 15.7 108 284-395 318-456 (480)
89 KOG4693 Uncharacterized conser 80.9 8.1 0.00017 36.0 7.7 32 379-416 244-275 (392)
90 PF08450 SGL: SMP-30/Gluconola 80.5 46 0.001 30.4 15.3 48 294-348 115-163 (246)
91 TIGR02800 propeller_TolB tol-p 80.5 64 0.0014 32.0 22.1 57 94-164 214-270 (417)
92 KOG0266 WD40 repeat-containing 79.3 77 0.0017 32.3 15.4 102 48-165 214-323 (456)
93 KOG0282 mRNA splicing factor [ 78.4 4.5 9.8E-05 40.4 5.7 101 215-349 273-374 (503)
94 smart00108 B_lectin Bulb-type 78.1 19 0.0004 28.9 8.5 20 290-310 92-111 (114)
95 KOG0643 Translation initiation 77.6 28 0.0006 32.6 10.1 103 50-168 66-185 (327)
96 cd00028 B_lectin Bulb-type man 77.1 19 0.00041 29.0 8.3 21 290-311 93-113 (116)
97 PF01453 B_lectin: D-mannose b 74.9 16 0.00034 29.5 7.2 74 29-110 3-78 (114)
98 KOG0271 Notchless-like WD40 re 74.7 45 0.00099 32.8 11.1 62 215-307 220-281 (480)
99 KOG1446 Histone H3 (Lys4) meth 74.6 14 0.0003 35.1 7.5 71 215-312 202-272 (311)
100 PHA03098 kelch-like protein; P 74.5 1.1E+02 0.0024 31.7 22.2 112 43-168 289-420 (534)
101 PRK04792 tolB translocation pr 73.1 1.1E+02 0.0024 31.0 20.3 107 43-165 222-343 (448)
102 KOG0649 WD40 repeat protein [G 72.9 12 0.00025 34.6 6.3 59 285-347 127-186 (325)
103 TIGR03547 muta_rot_YjhT mutatr 72.8 95 0.0021 30.1 20.8 34 44-77 13-48 (346)
104 PRK05137 tolB translocation pr 72.6 1.1E+02 0.0024 30.8 17.9 23 285-307 303-327 (435)
105 KOG2055 WD40 repeat protein [G 72.4 66 0.0014 32.4 11.8 70 215-313 273-344 (514)
106 KOG0379 Kelch repeat-containin 71.5 1.3E+02 0.0028 31.0 16.3 64 95-170 89-155 (482)
107 KOG1274 WD40 repeat protein [G 71.4 1.6E+02 0.0036 32.2 17.7 190 46-303 64-263 (933)
108 PRK04922 tolB translocation pr 71.3 1.2E+02 0.0026 30.6 17.2 23 285-307 305-329 (433)
109 PHA02790 Kelch-like protein; P 71.1 78 0.0017 32.5 13.0 110 43-167 357-475 (480)
110 KOG0291 WD40-repeat-containing 70.8 1.6E+02 0.0034 31.8 17.3 34 275-311 526-559 (893)
111 KOG0318 WD40 repeat stress pro 70.4 1.4E+02 0.0029 30.8 21.8 183 48-304 201-394 (603)
112 cd00028 B_lectin Bulb-type man 70.3 31 0.00068 27.7 8.0 85 57-170 30-114 (116)
113 KOG1036 Mitotic spindle checkp 70.2 1E+02 0.0022 29.4 13.3 97 48-161 25-125 (323)
114 PF14298 DUF4374: Domain of un 69.9 12 0.00025 37.7 6.2 62 94-164 367-428 (435)
115 TIGR03118 PEPCTERM_chp_1 conse 69.8 1.1E+02 0.0023 29.5 14.3 125 94-239 152-288 (336)
116 PF14583 Pectate_lyase22: Olig 69.7 1.2E+02 0.0027 30.1 15.7 65 94-170 168-233 (386)
117 COG3386 Gluconolactonase [Carb 69.3 1.1E+02 0.0024 29.4 20.5 51 284-340 223-278 (307)
118 PRK02889 tolB translocation pr 69.1 1.3E+02 0.0029 30.2 20.6 14 223-236 353-366 (427)
119 PRK11028 6-phosphogluconolacto 69.0 1.1E+02 0.0024 29.3 22.1 63 284-346 186-257 (330)
120 KOG0282 mRNA splicing factor [ 68.7 90 0.0019 31.6 11.9 62 50-111 272-339 (503)
121 PF03022 MRJP: Major royal jel 68.5 67 0.0015 30.5 11.1 63 94-170 34-105 (287)
122 KOG0315 G-protein beta subunit 68.1 1E+02 0.0023 28.7 18.0 66 217-311 232-297 (311)
123 PLN02193 nitrile-specifier pro 67.5 1.5E+02 0.0033 30.3 22.4 111 45-169 172-309 (470)
124 KOG0285 Pleiotropic regulator 66.8 1.3E+02 0.0029 29.4 19.0 74 284-358 371-449 (460)
125 TIGR03548 mutarot_permut cycli 65.9 1.3E+02 0.0028 28.9 14.6 127 29-168 50-200 (323)
126 KOG0270 WD40 repeat-containing 65.5 52 0.0011 32.9 9.5 65 215-312 302-371 (463)
127 KOG0271 Notchless-like WD40 re 65.4 53 0.0011 32.3 9.4 129 215-373 130-269 (480)
128 KOG2321 WD40 repeat protein [G 65.3 1.8E+02 0.0039 30.4 20.7 275 48-392 62-379 (703)
129 PRK11028 6-phosphogluconolacto 65.0 1.3E+02 0.0029 28.7 22.9 62 284-347 239-304 (330)
130 PLN02919 haloacid dehalogenase 64.7 2.6E+02 0.0057 32.0 25.9 54 287-340 817-880 (1057)
131 PRK03629 tolB translocation pr 64.1 1.7E+02 0.0036 29.5 17.6 23 285-307 300-324 (429)
132 smart00108 B_lectin Bulb-type 62.6 78 0.0017 25.2 8.9 51 291-346 61-111 (114)
133 PLN02919 haloacid dehalogenase 62.5 2.8E+02 0.0062 31.7 23.1 71 219-307 822-893 (1057)
134 PRK04922 tolB translocation pr 62.3 1.8E+02 0.0039 29.3 19.3 57 94-164 228-284 (433)
135 PF14727 PHTB1_N: PTHB1 N-term 61.8 85 0.0018 31.7 10.7 86 25-114 226-328 (418)
136 PF03022 MRJP: Major royal jel 61.5 41 0.0009 32.0 8.1 67 222-312 34-105 (287)
137 TIGR03118 PEPCTERM_chp_1 conse 61.4 1.3E+02 0.0027 29.0 10.9 60 94-167 222-286 (336)
138 COG4946 Uncharacterized protei 60.7 2E+02 0.0044 29.4 17.2 109 41-160 43-163 (668)
139 PF14517 Tachylectin: Tachylec 60.2 30 0.00065 31.7 6.5 23 218-242 185-207 (229)
140 KOG0639 Transducin-like enhanc 59.6 96 0.0021 31.7 10.2 64 217-312 568-631 (705)
141 PRK00178 tolB translocation pr 58.7 2E+02 0.0043 28.7 17.4 23 285-307 300-324 (430)
142 PRK05137 tolB translocation pr 57.3 2.2E+02 0.0047 28.7 22.9 57 94-164 226-282 (435)
143 PHA03098 kelch-like protein; P 57.2 2.4E+02 0.0052 29.2 15.5 39 295-337 359-397 (534)
144 KOG0308 Conserved WD40 repeat- 57.2 2.6E+02 0.0057 29.6 17.4 116 216-373 229-347 (735)
145 TIGR02276 beta_rpt_yvtn 40-res 56.6 26 0.00057 21.9 4.2 30 48-77 3-33 (42)
146 PLN02193 nitrile-specifier pro 56.4 2.4E+02 0.0052 28.9 16.6 42 294-337 244-286 (470)
147 KOG0379 Kelch repeat-containin 56.1 1.6E+02 0.0036 30.2 12.0 125 30-167 98-254 (482)
148 TIGR03547 muta_rot_YjhT mutatr 54.6 2.1E+02 0.0045 27.6 20.5 71 95-169 30-100 (346)
149 KOG2321 WD40 repeat protein [G 54.3 2.8E+02 0.0061 29.0 13.6 115 90-239 151-267 (703)
150 PRK03629 tolB translocation pr 54.2 2.4E+02 0.0053 28.3 22.8 58 94-165 223-280 (429)
151 COG2706 3-carboxymuconate cycl 53.5 2.2E+02 0.0049 27.7 13.7 25 284-308 302-329 (346)
152 PTZ00421 coronin; Provisional 53.3 1.7E+02 0.0036 30.3 11.5 104 49-168 181-298 (493)
153 PF12894 Apc4_WD40: Anaphase-p 53.0 15 0.00033 24.6 2.5 24 285-309 24-47 (47)
154 KOG1272 WD40-repeat-containing 52.6 1.6E+02 0.0035 29.8 10.5 102 50-170 143-249 (545)
155 PRK00178 tolB translocation pr 52.3 2.5E+02 0.0055 28.0 21.5 57 94-164 223-279 (430)
156 PF10282 Lactonase: Lactonase, 51.8 2.3E+02 0.0051 27.4 22.8 67 277-347 252-322 (345)
157 PRK04792 tolB translocation pr 51.3 2.8E+02 0.006 28.1 19.1 57 94-164 242-298 (448)
158 COG4257 Vgb Streptogramin lyas 50.9 2.3E+02 0.0049 27.0 14.4 25 128-165 72-96 (353)
159 KOG0310 Conserved WD40 repeat- 50.2 2.9E+02 0.0064 28.1 16.1 28 285-312 251-278 (487)
160 COG3391 Uncharacterized conser 50.1 2.7E+02 0.0058 27.6 19.3 196 47-312 84-293 (381)
161 PF12894 Apc4_WD40: Anaphase-p 49.5 23 0.00049 23.7 3.0 25 48-73 23-47 (47)
162 KOG0319 WD40-repeat-containing 49.5 3.7E+02 0.0079 29.0 13.7 30 284-313 250-279 (775)
163 KOG0270 WD40 repeat-containing 49.4 1.9E+02 0.0042 29.0 10.4 104 214-350 258-373 (463)
164 KOG0275 Conserved WD40 repeat- 49.2 2E+02 0.0044 27.7 10.1 104 50-170 362-477 (508)
165 KOG2106 Uncharacterized conser 49.1 1.6E+02 0.0035 30.2 9.9 79 53-136 385-467 (626)
166 PF01453 B_lectin: D-mannose b 48.7 91 0.002 25.0 7.1 58 286-347 21-79 (114)
167 KOG0303 Actin-binding protein 47.3 1.9E+02 0.0041 28.8 9.8 63 216-311 148-212 (472)
168 PF14517 Tachylectin: Tachylec 46.7 56 0.0012 30.0 6.0 60 94-170 141-205 (229)
169 PLN02153 epithiospecifier prot 46.6 2.8E+02 0.006 26.8 16.8 37 380-416 246-283 (341)
170 KOG4547 WD40 repeat-containing 46.2 3.6E+02 0.0079 28.0 15.7 104 151-312 79-182 (541)
171 PF14783 BBS2_Mid: Ciliary BBS 46.0 1.4E+02 0.003 24.1 7.4 72 272-349 5-80 (111)
172 KOG4547 WD40 repeat-containing 44.9 3.1E+02 0.0068 28.4 11.4 102 50-170 72-182 (541)
173 PRK14131 N-acetylneuraminic ac 44.0 3.3E+02 0.0071 26.8 22.0 34 123-168 33-66 (376)
174 PF14339 DUF4394: Domain of un 42.3 2.8E+02 0.0061 25.6 18.6 24 47-70 37-60 (236)
175 KOG1188 WD40 repeat protein [G 41.0 2.5E+02 0.0054 27.4 9.5 131 130-302 42-196 (376)
176 KOG2106 Uncharacterized conser 40.8 4.3E+02 0.0093 27.3 18.5 57 94-164 222-279 (626)
177 KOG0266 WD40 repeat-containing 40.7 4.1E+02 0.0088 27.0 21.4 148 94-312 225-374 (456)
178 TIGR02800 propeller_TolB tol-p 40.7 3.7E+02 0.0079 26.5 20.2 91 58-164 214-314 (417)
179 KOG4499 Ca2+-binding protein R 40.7 31 0.00067 31.8 3.3 31 48-78 222-253 (310)
180 KOG0288 WD40 repeat protein Ti 40.2 2.6E+02 0.0057 27.9 9.7 104 49-170 312-427 (459)
181 PF08553 VID27: VID27 cytoplas 39.8 2.9E+02 0.0063 30.4 11.0 90 284-373 493-599 (794)
182 KOG1273 WD40 repeat protein [G 39.1 3.7E+02 0.008 26.0 12.4 29 284-312 165-193 (405)
183 PF15525 DUF4652: Domain of un 37.8 1.7E+02 0.0036 26.0 7.2 67 92-170 86-158 (200)
184 PF02897 Peptidase_S9_N: Proly 37.2 4.2E+02 0.0091 26.2 11.5 154 48-235 238-409 (414)
185 PRK04043 tolB translocation pr 36.9 4.5E+02 0.0098 26.4 17.9 51 294-349 349-400 (419)
186 KOG0280 Uncharacterized conser 36.8 98 0.0021 29.5 6.0 72 213-312 179-252 (339)
187 smart00284 OLF Olfactomedin-li 36.2 3.7E+02 0.0079 25.2 15.1 35 123-170 78-112 (255)
188 KOG1274 WD40 repeat protein [G 35.9 6.5E+02 0.014 27.9 14.3 61 285-347 201-262 (933)
189 PRK04043 tolB translocation pr 35.4 4.8E+02 0.01 26.3 13.9 26 279-306 286-313 (419)
190 PF13964 Kelch_6: Kelch motif 35.3 40 0.00087 22.2 2.6 31 379-416 5-35 (50)
191 PTZ00420 coronin; Provisional 35.3 5.6E+02 0.012 27.1 18.4 61 151-240 147-207 (568)
192 KOG0315 G-protein beta subunit 34.7 3.9E+02 0.0085 25.0 12.6 60 285-346 137-196 (311)
193 PF14727 PHTB1_N: PTHB1 N-term 34.2 5.1E+02 0.011 26.2 17.2 104 48-171 145-280 (418)
194 KOG0279 G protein beta subunit 34.1 4.2E+02 0.009 25.2 14.5 101 212-348 162-263 (315)
195 PF02191 OLF: Olfactomedin-lik 33.3 2E+02 0.0043 26.8 7.7 43 29-71 161-208 (250)
196 KOG2395 Protein involved in va 33.3 3.6E+02 0.0078 28.1 9.7 90 284-373 345-452 (644)
197 PRK02888 nitrous-oxide reducta 33.0 6.4E+02 0.014 27.0 14.4 57 94-163 215-271 (635)
198 KOG0303 Actin-binding protein 32.2 5.3E+02 0.011 25.8 10.4 55 23-77 159-214 (472)
199 KOG0293 WD40 repeat-containing 32.1 5.4E+02 0.012 25.9 13.8 97 216-349 328-427 (519)
200 PF07995 GSDH: Glucose / Sorbo 32.0 4.1E+02 0.0088 25.7 10.0 20 286-306 14-33 (331)
201 COG4880 Secreted protein conta 32.0 4.5E+02 0.0097 26.7 9.8 50 284-340 149-199 (603)
202 PRK14131 N-acetylneuraminic ac 31.0 5.2E+02 0.011 25.3 13.4 34 43-76 33-68 (376)
203 KOG1036 Mitotic spindle checkp 30.9 4.9E+02 0.011 25.0 9.6 103 48-169 65-172 (323)
204 KOG0281 Beta-TrCP (transducin 29.9 4.9E+02 0.011 25.5 9.5 102 214-348 372-478 (499)
205 KOG4499 Ca2+-binding protein R 29.5 1.5E+02 0.0031 27.6 5.7 31 128-171 222-252 (310)
206 PF14779 BBS1: Ciliary BBSome 28.8 1.5E+02 0.0032 27.8 5.9 59 213-300 196-256 (257)
207 KOG4378 Nuclear protein COP1 [ 28.3 4.1E+02 0.0089 27.4 9.0 50 53-102 182-239 (673)
208 PRK02888 nitrous-oxide reducta 28.2 7.6E+02 0.017 26.4 13.4 124 20-167 217-358 (635)
209 KOG0639 Transducin-like enhanc 28.1 6.4E+02 0.014 26.1 10.3 104 48-170 521-631 (705)
210 KOG0265 U5 snRNP-specific prot 27.8 3.8E+02 0.0083 25.7 8.3 29 284-312 102-130 (338)
211 KOG1272 WD40-repeat-containing 27.7 1.2E+02 0.0026 30.7 5.3 68 270-340 130-201 (545)
212 TIGR03606 non_repeat_PQQ dehyd 27.6 5.5E+02 0.012 26.3 10.2 21 285-305 41-62 (454)
213 PF14781 BBS2_N: Ciliary BBSom 27.1 1.8E+02 0.004 24.3 5.5 64 47-111 63-134 (136)
214 KOG0313 Microtubule binding pr 26.9 6.4E+02 0.014 25.1 12.5 121 212-369 271-396 (423)
215 PF02191 OLF: Olfactomedin-lik 26.8 5.2E+02 0.011 24.0 15.0 32 123-167 73-105 (250)
216 COG3055 Uncharacterized protei 26.0 2.8E+02 0.0061 27.3 7.3 96 284-394 46-155 (381)
217 PF12234 Rav1p_C: RAVE protein 25.6 8.5E+02 0.019 26.1 12.1 14 227-240 10-23 (631)
218 KOG0319 WD40-repeat-containing 25.5 7E+02 0.015 27.0 10.5 23 284-306 161-183 (775)
219 PF10282 Lactonase: Lactonase, 24.9 6.3E+02 0.014 24.3 24.1 56 285-340 204-267 (345)
220 PF14339 DUF4394: Domain of un 24.5 5.6E+02 0.012 23.6 13.2 26 128-167 38-63 (236)
221 PLN02153 epithiospecifier prot 23.1 6.7E+02 0.015 24.0 19.7 43 294-338 217-260 (341)
222 PF08309 LVIVD: LVIVD repeat; 22.7 1.9E+02 0.0042 18.7 3.9 25 43-67 6-30 (42)
223 KOG0268 Sof1-like rRNA process 22.6 6.5E+02 0.014 24.9 9.0 171 51-300 82-257 (433)
224 KOG0288 WD40 repeat protein Ti 22.4 8E+02 0.017 24.7 12.3 108 151-313 321-428 (459)
225 KOG1332 Vesicle coat complex C 22.4 6.5E+02 0.014 23.6 15.1 64 284-349 223-288 (299)
226 smart00284 OLF Olfactomedin-li 22.2 3.9E+02 0.0085 25.0 7.4 41 31-71 168-213 (255)
227 KOG0308 Conserved WD40 repeat- 22.0 9.9E+02 0.022 25.6 10.9 108 214-348 132-244 (735)
228 KOG0265 U5 snRNP-specific prot 21.8 7.2E+02 0.016 23.9 11.9 32 48-79 102-133 (338)
229 KOG0299 U3 snoRNP-associated p 21.8 8.6E+02 0.019 24.7 17.5 66 284-349 338-412 (479)
230 KOG0286 G-protein beta subunit 21.3 7.4E+02 0.016 23.8 19.5 68 216-311 245-312 (343)
231 PRK01742 tolB translocation pr 21.3 8.3E+02 0.018 24.4 20.3 206 94-373 184-394 (429)
232 COG3391 Uncharacterized conser 21.1 8E+02 0.017 24.2 19.3 148 94-310 96-247 (381)
233 PF08553 VID27: VID27 cytoplas 20.7 1.2E+03 0.025 25.9 12.2 112 39-166 431-568 (794)
No 1
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=100.00 E-value=1.1e-43 Score=363.42 Aligned_cols=362 Identities=25% Similarity=0.445 Sum_probs=276.7
Q ss_pred CCCCCCCCCCCccccCCcccCccccccceeeeEEEeCC--ceeeCcEEECCEEEEeccCCcEEEEECCCCccceEeeccc
Q 039692 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAGK--DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK 78 (417)
Q Consensus 1 Wp~~~~~~~~~~~~~~~~~i~~~~~~~~~~~W~~~~~~--~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 78 (417)
||+|++|+.++||++..+ |++.|+.+++++|++.++. .+.++|++.+++||+++.++.|+|||++||+++|+++...
T Consensus 21 W~~~g~~~~~~r~s~l~q-I~~~nv~~L~~~W~~~~g~~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~ 99 (527)
T TIGR03075 21 WLTYGGGYAGQRYSPLDQ-INTENVKKLQPAWTFSLGKLRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKL 99 (527)
T ss_pred ccccCCCCCCcccCChHh-cChhhhccceEEEEEECCCCCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCC
Confidence 999999999999999887 9999999999999999975 3689999999999999999999999999999999998753
Q ss_pred ccCCcc---e-----e-eEEee--e----eeEEEEEecCCCceeeeeecCCCC-CcceeeceeEEcCeEEEEeCCccCcc
Q 039692 79 LTGLSG---T-----G-IVVNV--T----VAVVVAVSRSNGELVWSTQIDPRP-RSQITMSGSVYMGAFYVGLSSLEEAL 142 (417)
Q Consensus 79 ~~~~~p---~-----~-~v~~~--~----v~~l~ald~~tG~~~W~~~~~~~~-~~~~~~sp~v~~~~v~v~~~~~~~~~ 142 (417)
.....+ + + .+.++ + .++|+|||++|||++|++++.... ...+.++|++.+++||++..+.+..
T Consensus 100 ~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~- 178 (527)
T TIGR03075 100 PDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG- 178 (527)
T ss_pred CcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccC-
Confidence 211111 1 1 12222 1 289999999999999999874322 2347789999999999987653321
Q ss_pred ccCcccCCCceEEEEeCCCCceeceeeecCCCCC-----------CCC---------CCCCccccCCCceeecccCcccC
Q 039692 143 PADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGG-----------KRG---------GYSGAAVWGSSPAIDVIRRQKQN 202 (417)
Q Consensus 143 ~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----------~~~---------~~~gg~~~~~~pa~d~~~~~~~~ 202 (417)
.+|.|+|||++||+++|++...+.... .++ ..+|+++|+. +++|++++..+.
T Consensus 179 -------~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~-~s~D~~~~lvy~ 250 (527)
T TIGR03075 179 -------VRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGT-GSYDPETNLIYF 250 (527)
T ss_pred -------CCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCc-eeEcCCCCeEEE
Confidence 268999999999999999998654311 111 1367899974 799999986332
Q ss_pred CC-CCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCC
Q 039692 203 NQ-TTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNG 281 (417)
Q Consensus 203 ~~-~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G 281 (417)
.. ...|.-.......+.+...|+|||++|||++|.|+..+++.|+ ++..+.|+|+++..+|
T Consensus 251 ~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD------------------~d~~~~p~l~d~~~~G 312 (527)
T TIGR03075 251 GTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD------------------YDGVNEMILFDLKKDG 312 (527)
T ss_pred eCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc------------------ccCCCCcEEEEeccCC
Confidence 11 1233333444455666789999999999999999999999994 4556899999998899
Q ss_pred eeeeEEEEEcccceEEEEECCCCcEE----------EEeecCC-------------------------CCCCCcceec-c
Q 039692 282 RFRDVVVAVQKSGFAWAFDRDSGDII----------WFKLAGP-------------------------GGREGGGVWG-A 325 (417)
Q Consensus 282 ~~~~~v~~~~~~G~l~ald~~tG~~l----------W~~~~~~-------------------------~~~~g~~~~~-~ 325 (417)
+..++|.+++++|.+|+||++|||++ |...+++ +...|+..|. +
T Consensus 313 ~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~ 392 (527)
T TIGR03075 313 KPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPM 392 (527)
T ss_pred cEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCc
Confidence 88889999999999999999999997 4322210 1223444443 2
Q ss_pred ccc--------------------------------------------CCeEEEEeccCCceeeeecCCCCCCCccceeee
Q 039692 326 ATD--------------------------------------------GRRVYTNIVNNDRIIWSTADPSNETAHGPVTVV 361 (417)
Q Consensus 326 ~~~--------------------------------------------~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~ 361 (417)
++| -+.|.+.|..+++++|+.+... ...++|++..
T Consensus 393 A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~ 471 (527)
T TIGR03075 393 AYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF-PLWGGVLATA 471 (527)
T ss_pred eECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC-CCCCcceEEC
Confidence 222 1346677777889999998763 5577888889
Q ss_pred CCeEEeccCCCC--------CC---------eecccccc--cCCeEEEe
Q 039692 362 NGVLFAGSVSAN--------GS---------TVYGGVPA--SYGCIYLG 391 (417)
Q Consensus 362 ~~~v~~~~~~g~--------g~---------~~~~sp~~--~~g~lyv~ 391 (417)
+++||+++.+|. |+ ...++|+. +||++||.
T Consensus 472 g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 472 GDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA 520 (527)
T ss_pred CcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence 999999988877 44 44588997 89999994
No 2
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=100.00 E-value=1.1e-42 Score=355.19 Aligned_cols=391 Identities=23% Similarity=0.408 Sum_probs=276.4
Q ss_pred CCCCCCCCCCCccccCCcccCccccccceeeeEEEeC--CceeeCcEEECCEEEEeccCCcEEEEECCCCccceEeeccc
Q 039692 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAG--KDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK 78 (417)
Q Consensus 1 Wp~~~~~~~~~~~~~~~~~i~~~~~~~~~~~W~~~~~--~~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 78 (417)
||++++++.|++|++..+ |+..|..+++++|+++++ ..+.++|++.+++||+++.++.|+|||++||+++|+++...
T Consensus 13 W~~~~~~~~~~~~~~~~~-i~~~n~~~~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~ 91 (488)
T cd00216 13 WLAYGRTYAGQRFSPLKQ-INAANVKKLKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKL 91 (488)
T ss_pred ccccCCCCCCCccCchhh-cChhhhhcceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCC
Confidence 999999999999999986 999999999999999998 57899999999999999999999999999999999998865
Q ss_pred c-cCCcc-e---e-eEEe-ee--e----eEEEEEecCCCceeeeeecCCC--CCcceeeceeEEcCeEEEEeCCccCccc
Q 039692 79 L-TGLSG-T---G-IVVN-VT--V----AVVVAVSRSNGELVWSTQIDPR--PRSQITMSGSVYMGAFYVGLSSLEEALP 143 (417)
Q Consensus 79 ~-~~~~p-~---~-~v~~-~~--v----~~l~ald~~tG~~~W~~~~~~~--~~~~~~~sp~v~~~~v~v~~~~~~~~~~ 143 (417)
. ...++ . + .+.+ +. + +.|+|||++||+++|++++..+ ....+.++|++.++.||++....+..
T Consensus 92 ~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~-- 169 (488)
T cd00216 92 PADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFF-- 169 (488)
T ss_pred CccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccc--
Confidence 3 11111 0 1 1223 32 2 8999999999999999997654 22336789999999999987542210
Q ss_pred cCcccCCCceEEEEeCCCCceeceeeecCCC-CCCCC--------CCCCccccCCCceeecccCcccCC-CCCCCCC--C
Q 039692 144 ADQCCTFRGSLAKLDVRNGRIIWQTYMLPDN-GGKRG--------GYSGAAVWGSSPAIDVIRRQKQNN-QTTKPTH--P 211 (417)
Q Consensus 144 ~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~--------~~~gg~~~~~~pa~d~~~~~~~~~-~~~~p~~--~ 211 (417)
++..++.|+|||++||+++|+++..+.. ...+. ...++.+|. +|++|+..+..+.. ....|.. .
T Consensus 170 ---~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~ 245 (488)
T cd00216 170 ---ACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGG 245 (488)
T ss_pred ---cCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCC
Confidence 1223689999999999999999885321 11110 123466775 48888765532111 0011111 0
Q ss_pred CCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEe-cCCeeeeEEEEE
Q 039692 212 DQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIS-TNGRFRDVVVAV 290 (417)
Q Consensus 212 ~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~-~~G~~~~~v~~~ 290 (417)
..........+.|+|||++||+++|+++....+.|.+ +..++|++.+.. ++|+...+||++
T Consensus 246 ~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~------------------~~~s~p~~~~~~~~~g~~~~~V~~g 307 (488)
T cd00216 246 RRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY------------------DGPNQPSLADIKPKDGKPVPAIVHA 307 (488)
T ss_pred ccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc------------------ccCCCCeEEeccccCCCeeEEEEEE
Confidence 0111223345689999999999999999876665532 223567877654 566555689999
Q ss_pred cccceEEEEECCCCcEEEEeecC--CCCCCCcceecc-----------------cccCCeEEEEeccCCceeeeecCCC-
Q 039692 291 QKSGFAWAFDRDSGDIIWFKLAG--PGGREGGGVWGA-----------------ATDGRRVYTNIVNNDRIIWSTADPS- 350 (417)
Q Consensus 291 ~~~G~l~ald~~tG~~lW~~~~~--~~~~~g~~~~~~-----------------~~~~~~vy~~~~~~~~~~W~~~~~~- 350 (417)
+.+|.|+|||++||+++|+.+.. +.....+..+.. ...++.|++.+..+++.+|+.+...
T Consensus 308 ~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~ 387 (488)
T cd00216 308 PKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI 387 (488)
T ss_pred CCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc
Confidence 99999999999999999998753 100000111111 1235789999999999999998751
Q ss_pred -------CCCCccceeeeCCeEEeccCCCC--------CCee---------ccccc--ccCCeEEEecCeee--e-----
Q 039692 351 -------NETAHGPVTVVNGVLFAGSVSAN--------GSTV---------YGGVP--ASYGCIYLGNGYTV--S----- 397 (417)
Q Consensus 351 -------~~~~~~p~~~~~~~v~~~~~~g~--------g~~~---------~~sp~--~~~g~lyv~~~~~~--~----- 397 (417)
.....+|+++.+++||+++.+|. |+.. .++|+ +++|+|||++.-+. .
T Consensus 388 ~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~~~~~~~~~ 467 (488)
T cd00216 388 RDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVGGGGSFPTGM 467 (488)
T ss_pred ccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEecCCccccccc
Confidence 12345677789999999998887 4444 48898 55999999653332 0
Q ss_pred --ccCCCCCCCCCCEEEEEEe
Q 039692 398 --LGKFHPTWTPGTSLYAFCT 416 (417)
Q Consensus 398 --~~~~~~~~~~~~~~~~~~~ 416 (417)
+.++.++-.+||.|++|.|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~l 488 (488)
T cd00216 468 GGVAKLDRWTAMGGYIIAFSL 488 (488)
T ss_pred cccchhcccCCCCCEEEEEEC
Confidence 0122333368999999986
No 3
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=100.00 E-value=7.4e-40 Score=343.74 Aligned_cols=287 Identities=22% Similarity=0.299 Sum_probs=222.4
Q ss_pred CCCCCCCCCCCccccCCcccCccccccceeeeEEEeCC----------ceeeCcEEECCEEEEeccCCcEEEEECCCCcc
Q 039692 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAGK----------DISATPAVANGVVYFPSWNGYLYAVNAFNGAL 70 (417)
Q Consensus 1 Wp~~~~~~~~~~~~~~~~~i~~~~~~~~~~~W~~~~~~----------~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~ 70 (417)
|++|++++.++|||+.+| |++.|+.+++++|++.+++ ...++|++.+|+||+++.++.|+|||++|||+
T Consensus 138 W~~yg~~~~~~RySpL~q-In~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~ 216 (764)
T TIGR03074 138 WAAYGRTQAGQRYSPLDQ-INPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKE 216 (764)
T ss_pred ccccCCCCcccccCcccc-cCcccccCceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCCcE
Confidence 999999999999999997 9999999999999999874 35789999999999999999999999999999
Q ss_pred ceEeecccccCCcc----e-ee-------------------EEee------eeeEEEEEecCCCceeeeeecCCCC----
Q 039692 71 IWEQNLSKLTGLSG----T-GI-------------------VVNV------TVAVVVAVSRSNGELVWSTQIDPRP---- 116 (417)
Q Consensus 71 ~W~~~~~~~~~~~p----~-~~-------------------v~~~------~v~~l~ald~~tG~~~W~~~~~~~~---- 116 (417)
+|+++........+ | ++ +.++ ..++|+|||++||+++|++..+++.
T Consensus 217 lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~ 296 (764)
T TIGR03074 217 KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTA 296 (764)
T ss_pred EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeec
Confidence 99999875332100 0 00 1111 2299999999999999987653321
Q ss_pred --------CcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCC-C--CC---CCC
Q 039692 117 --------RSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGG-K--RG---GYS 182 (417)
Q Consensus 117 --------~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-~--~~---~~~ 182 (417)
.....++|+|.++.||++....++ ..|+..+|.|+|||++||+++|+++....... . .+ ..+
T Consensus 297 ~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~----~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~g 372 (764)
T TIGR03074 297 GMGTTPPGYYYPTSPPLVAGTTVVIGGRVADN----YSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRN 372 (764)
T ss_pred ccCcCCCcccccccCCEEECCEEEEEeccccc----ccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccC
Confidence 123688999999999998764332 12445579999999999999999987422111 0 11 125
Q ss_pred CccccCCCceeecccCccc---CCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCC
Q 039692 183 GAAVWGSSPAIDVIRRQKQ---NNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCP 259 (417)
Q Consensus 183 gg~~~~~~pa~d~~~~~~~---~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~ 259 (417)
+++.|. ..++|++++..+ ++........+...+...+.+.|+|||++|||++|.++..+++.|
T Consensus 373 g~n~W~-~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~W------------- 438 (764)
T TIGR03074 373 TPNSWS-VASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLW------------- 438 (764)
T ss_pred CCCccC-ceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccc-------------
Confidence 678886 479999998643 222211111222345567789999999999999999999999999
Q ss_pred CCCCCCCccCCCceEEEEec-CCeeeeEEEEEcccceEEEEECCCCcEEEEee
Q 039692 260 PGPNLDADFGEAPMLLTIST-NGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 260 ~~~~~~~~~~~~p~v~~~~~-~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~ 311 (417)
|+|+.+.|+|.|+.. +|+....|++++++|.+|+||++|||++|..+
T Consensus 439 -----D~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 439 -----DMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred -----cccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 556778999999986 78667899999999999999999999999753
No 4
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=100.00 E-value=3.5e-36 Score=300.31 Aligned_cols=310 Identities=22% Similarity=0.282 Sum_probs=224.3
Q ss_pred cccCCcccCccccccceeeeEEEeCCce-----eeCcEEECCEEEEeccCCcEEEEECCCCccceEeecccc--------
Q 039692 13 YAYGEVLINPVTVRNLRLRWSFYAGKDI-----SATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKL-------- 79 (417)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~W~~~~~~~~-----~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-------- 79 (417)
.++.++ +. +...++++|+++++..+ .++|++.+++||+.+.++.|+|||++||+++|++++...
T Consensus 32 ~~~l~~-~~--~~~~~~~~W~~~~g~g~~~~~~~~sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 108 (394)
T PRK11138 32 MSPLPQ-VE--NQFTPTTVWSTSVGDGVGDYYSRLHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNK 108 (394)
T ss_pred CCCccc-cc--ccCCcceeeEEEcCCCCccceeeeccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccccc
Confidence 445543 32 45678999999998765 358999999999999999999999999999999998751
Q ss_pred ---cCCcceeeEEee--ee----eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCC
Q 039692 80 ---TGLSGTGIVVNV--TV----AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTF 150 (417)
Q Consensus 80 ---~~~~p~~~v~~~--~v----~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~ 150 (417)
....|. +.++ ++ +.|+|||++||+++|++++... +.++|++.+++||++..
T Consensus 109 ~~~~~~~~~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~----~~ssP~v~~~~v~v~~~-------------- 168 (394)
T PRK11138 109 SALLSGGVT--VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE----ALSRPVVSDGLVLVHTS-------------- 168 (394)
T ss_pred ccccccccE--EECCEEEEEcCCCEEEEEECCCCCCcccccCCCc----eecCCEEECCEEEEECC--------------
Confidence 112232 3333 22 8999999999999999997643 67889999999999876
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~ 230 (417)
++.|+|||++||+++|+++........ .....|.+.++.++....++.++|+|++
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~-------------------------~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTL-------------------------RGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccc-------------------------cCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 489999999999999999863111000 0012344444456667778999999999
Q ss_pred CCceEEEecCCCCcc-eeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEE
Q 039692 231 SGRIAWAKPLGGYDI-FYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWF 309 (417)
Q Consensus 231 tG~~~W~~~~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~ 309 (417)
+|+++|+++...... ... ....+..++|++. ++.||+.+.+|.++|+|+++|+++|+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~--------------~~~~~~~~sP~v~--------~~~vy~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEI--------------DRLVDVDTTPVVV--------GGVVYALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred CChhhheeccccCCCccch--------------hcccccCCCcEEE--------CCEEEEEEcCCeEEEEECCCCCEEEe
Confidence 999999987543210 000 0001233688887 57899999999999999999999999
Q ss_pred eecCCCC--CCCcceecccccCCeEEEEeccCCceeeeecCCCCCCCccceeeeCCeEEeccCCCC--------C-----
Q 039692 310 KLAGPGG--REGGGVWGAATDGRRVYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGSVSAN--------G----- 374 (417)
Q Consensus 310 ~~~~~~~--~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~~~g~--------g----- 374 (417)
.+.+... ...+........++.+|+.+.++++++|+.+.......++|+ +.+++||+++.+|. |
T Consensus 282 ~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 282 REYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV-LYNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred ecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE-EECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 8864210 000011112234566777778888999988754345677887 67899999998887 3
Q ss_pred -----CeecccccccCCeEEEecC
Q 039692 375 -----STVYGGVPASYGCIYLGNG 393 (417)
Q Consensus 375 -----~~~~~sp~~~~g~lyv~~~ 393 (417)
..++++|++++++|||++.
T Consensus 361 ~~~~~~~~~s~P~~~~~~l~v~t~ 384 (394)
T PRK11138 361 QKVDSSGFLSEPVVADDKLLIQAR 384 (394)
T ss_pred EEcCCCcceeCCEEECCEEEEEeC
Confidence 2355889999999999765
No 5
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=100.00 E-value=1.3e-34 Score=287.39 Aligned_cols=300 Identities=20% Similarity=0.278 Sum_probs=220.3
Q ss_pred ccceeeeEEEeCCcee-----eCcEEECCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee--ee----e
Q 039692 26 RNLRLRWSFYAGKDIS-----ATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV--TV----A 94 (417)
Q Consensus 26 ~~~~~~W~~~~~~~~~-----~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~--~v----~ 94 (417)
.+++++|+++++.... ++|++.+++||+++.++.|+|||++||+++|++++...+..+|. +.++ ++ +
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g 115 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKG 115 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCC
Confidence 4689999999998753 78999999999999999999999999999999999987666665 4444 22 8
Q ss_pred EEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCC
Q 039692 95 VVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDN 174 (417)
Q Consensus 95 ~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~ 174 (417)
.|+|||++||+++|+.++... +.++|++.++.||++.. ++.|+|+|++||+++|+++.....
T Consensus 116 ~l~ald~~tG~~~W~~~~~~~----~~~~p~v~~~~v~v~~~--------------~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSSE----VLSPPLVANGLVVVRTN--------------DGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred EEEEEECCCCcEeeeeccCce----eecCCEEECCEEEEECC--------------CCeEEEEEcCCCceeeEEccCCCc
Confidence 999999999999999997643 66789999999999876 589999999999999998874211
Q ss_pred CCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCC
Q 039692 175 GGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPN 254 (417)
Q Consensus 175 ~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~ 254 (417)
.... ....|.+.++.++....++.++++|+++|+++|+++........
T Consensus 178 ~~~~-------------------------~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~------- 225 (377)
T TIGR03300 178 LTLR-------------------------GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT------- 225 (377)
T ss_pred eeec-------------------------CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC-------
Confidence 1000 00123333345566667789999999999999987653211000
Q ss_pred CCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCC---CCCCcceecccccCCe
Q 039692 255 NPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPG---GREGGGVWGAATDGRR 331 (417)
Q Consensus 255 ~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~---~~~g~~~~~~~~~~~~ 331 (417)
. . ....+..++|++. ++.||+.+.+|.++|+|+++|+++|+.+.... ...++ .......++.
T Consensus 226 -~---~--~~~~~~~~~p~~~--------~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~-~vyv~~~~G~ 290 (377)
T TIGR03300 226 -E---L--ERLVDVDGDPVVD--------GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDN-RLYVTDADGV 290 (377)
T ss_pred -c---h--hhhhccCCccEEE--------CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCC-EEEEECCCCe
Confidence 0 0 0001123577776 56899999999999999999999999885310 01111 1111223456
Q ss_pred EEEEeccCCceeeeecCCCCCCCccceeeeCCeEEeccCCCC--------C----------CeecccccccCCeEEEecC
Q 039692 332 VYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGSVSAN--------G----------STVYGGVPASYGCIYLGNG 393 (417)
Q Consensus 332 vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~~~g~--------g----------~~~~~sp~~~~g~lyv~~~ 393 (417)
+|+.+.++++++|+.+.......++|+ +.++.||+++.+|. | ..++++|+++|++||+++.
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~-i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPA-VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 666777788999998543345677887 67889999998876 2 2457999999999999766
No 6
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=100.00 E-value=6.7e-33 Score=276.70 Aligned_cols=280 Identities=21% Similarity=0.310 Sum_probs=210.6
Q ss_pred ccCccccccceeeeEEEeCC-----------ceeeCcEEECCEEEEeccCCcEEEEECCCCccceEeecccccCCcceee
Q 039692 19 LINPVTVRNLRLRWSFYAGK-----------DISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGI 87 (417)
Q Consensus 19 ~i~~~~~~~~~~~W~~~~~~-----------~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~ 87 (417)
.+.+.+.++++++|++++.. .+.++|++.+++||+++.++.|+|||++||+++|++++.....++|.
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~-- 157 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPV-- 157 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCE--
Confidence 47788899999999999875 23467899999999999999999999999999999999877666676
Q ss_pred EEeee--e----eEEEEEecCCCceeeeeecCCCCC-cceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCC
Q 039692 88 VVNVT--V----AVVVAVSRSNGELVWSTQIDPRPR-SQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVR 160 (417)
Q Consensus 88 v~~~~--v----~~l~ald~~tG~~~W~~~~~~~~~-~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~ 160 (417)
+.++. + +.|+|||++||+++|+++...... ....++|++.++.+|++.. ++.++|+|++
T Consensus 158 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~--------------~g~v~a~d~~ 223 (394)
T PRK11138 158 VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD--------------NGRVSAVLME 223 (394)
T ss_pred EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC--------------CCEEEEEEcc
Confidence 55442 2 899999999999999999753211 1124689999999999876 5899999999
Q ss_pred CCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecC
Q 039692 161 NGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPL 240 (417)
Q Consensus 161 tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~ 240 (417)
||+++|+++....... . .++ ........|++.++.+|....++.++|+|++||+++|+.+.
T Consensus 224 ~G~~~W~~~~~~~~~~--------~------~~~-----~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 224 QGQLIWQQRISQPTGA--------T------EID-----RLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CChhhheeccccCCCc--------c------chh-----cccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 9999999876321000 0 000 00112245666677788877889999999999999999875
Q ss_pred CCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCc
Q 039692 241 GGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGG 320 (417)
Q Consensus 241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~ 320 (417)
... ..|++. ++.||+.+.+|+++|||+++|+++|+.+... +.
T Consensus 285 ~~~--------------------------~~~~~~--------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~ 326 (394)
T PRK11138 285 GSV--------------------------NDFAVD--------GGRIYLVDQNDRVYALDTRGGVELWSQSDLL----HR 326 (394)
T ss_pred CCc--------------------------cCcEEE--------CCEEEEEcCCCeEEEEECCCCcEEEcccccC----CC
Confidence 421 235554 5789999999999999999999999876421 11
Q ss_pred ceecccc---------cCCeEEEEeccCCceeeeecCCCCCCCccceeeeCCeEEeccCCC
Q 039692 321 GVWGAAT---------DGRRVYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGSVSA 372 (417)
Q Consensus 321 ~~~~~~~---------~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~~~g 372 (417)
...+|++ .++.+|+.+.++++++|+.+.......++|+ +.++.||+++.+|
T Consensus 327 ~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~-~~~~~l~v~t~~G 386 (394)
T PRK11138 327 LLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPV-VADDKLLIQARDG 386 (394)
T ss_pred cccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCE-EECCEEEEEeCCc
Confidence 1223333 3455667778889999999875435667888 6778999998865
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=100.00 E-value=6e-31 Score=261.19 Aligned_cols=280 Identities=19% Similarity=0.295 Sum_probs=210.3
Q ss_pred ccCccccccceeeeEEEeCCceeeCcEEECCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEeee------
Q 039692 19 LINPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVT------ 92 (417)
Q Consensus 19 ~i~~~~~~~~~~~W~~~~~~~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~------ 92 (417)
.|.+.+..+++++|+++++..+.++|++.++++|+++.++.|+|||++||+++|++.+.....++|. +.++.
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~ 153 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL--VANGLVVVRTN 153 (377)
T ss_pred eEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE--EECCEEEEECC
Confidence 4778888999999999999999899999999999999999999999999999999999876655665 44332
Q ss_pred eeEEEEEecCCCceeeeeecCCCCCc-ceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeec
Q 039692 93 VAVVVAVSRSNGELVWSTQIDPRPRS-QITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYML 171 (417)
Q Consensus 93 v~~l~ald~~tG~~~W~~~~~~~~~~-~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~ 171 (417)
.+.|+|+|.++|+++|+++....... ...++|++.++.+|++.. ++.++++|++||+++|+++..
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~--------------~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA--------------GGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC--------------CCEEEEEEccCCCEeeeeccc
Confidence 28999999999999999986543211 124678888999998876 489999999999999997652
Q ss_pred CCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeecc
Q 039692 172 PDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCL 251 (417)
Q Consensus 172 ~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 251 (417)
... + .. .+. + .......|.+.++.+|....++.++|+|++||+++|+.+....
T Consensus 220 ~~~-g-------~~------~~~--~---~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-------- 272 (377)
T TIGR03300 220 LPK-G-------RT------ELE--R---LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-------- 272 (377)
T ss_pred cCC-C-------CC------chh--h---hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc--------
Confidence 110 0 00 000 0 0011234555566778778889999999999999999874321
Q ss_pred CCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCcceecccc----
Q 039692 252 VPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAAT---- 327 (417)
Q Consensus 252 ~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~---- 327 (417)
.+|++. ++.||+++.+|.|+|+|+.+|+++|+.+.-. +.....|++
T Consensus 273 ------------------~~p~~~--------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~----~~~~ssp~i~g~~ 322 (377)
T TIGR03300 273 ------------------QGPAVD--------DNRLYVTDADGVVVALDRRSGSELWKNDELK----YRQLTAPAVVGGY 322 (377)
T ss_pred ------------------cCceEe--------CCEEEEECCCCeEEEEECCCCcEEEcccccc----CCccccCEEECCE
Confidence 457765 5789999999999999999999999984211 111122332
Q ss_pred -----cCCeEEEEeccCCceeeeecCCCCCCCccceeeeCCeEEeccCCC
Q 039692 328 -----DGRRVYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGSVSA 372 (417)
Q Consensus 328 -----~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~~~g 372 (417)
.++.||+.+.++++++|+.+.......++|+ +.++.+|+++.+|
T Consensus 323 l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~-~~~~~l~v~~~dG 371 (377)
T TIGR03300 323 LVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPV-VVGDGLLVQTRDG 371 (377)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCE-EECCEEEEEeCCc
Confidence 3456777777889999999876434677887 6667788888765
No 8
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=253.85 Aligned_cols=285 Identities=21% Similarity=0.345 Sum_probs=215.8
Q ss_pred CCCCCCCCCCCccccCCcccCccccccceeeeEEEeCCc----------eeeCcEEECCEEEEeccCCcEEEEECCCCcc
Q 039692 1 WLNHGGDLNNRRYAYGEVLINPVTVRNLRLRWSFYAGKD----------ISATPAVANGVVYFPSWNGYLYAVNAFNGAL 70 (417)
Q Consensus 1 Wp~~~~~~~~~~~~~~~~~i~~~~~~~~~~~W~~~~~~~----------~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~ 70 (417)
|.+|++++.++||||.+| |++.|+.+++++|++.++.. -..+|+..++.+|+++..++++|||++||++
T Consensus 158 W~~YGrt~~gqRySpL~Q-In~DNV~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TGke 236 (773)
T COG4993 158 WHQYGRTQFGQRYSPLKQ-INADNVGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATGKE 236 (773)
T ss_pred hhhhcCCccccccChhhh-cChhhhhccceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeeccCCce
Confidence 899999999999999998 99999999999999999762 2569999999999999999999999999999
Q ss_pred ceEeecccccCCcc----e-ee-------------EEee----eeeEEEEEecCCCceeeeeecCCCC------------
Q 039692 71 IWEQNLSKLTGLSG----T-GI-------------VVNV----TVAVVVAVSRSNGELVWSTQIDPRP------------ 116 (417)
Q Consensus 71 ~W~~~~~~~~~~~p----~-~~-------------v~~~----~v~~l~ald~~tG~~~W~~~~~~~~------------ 116 (417)
+|+++........+ | ++ ..|. ...+|+|||++|||+.|++...+..
T Consensus 237 kWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g 316 (773)
T COG4993 237 KWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDG 316 (773)
T ss_pred eeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCC
Confidence 99998763221111 1 11 1111 2299999999999999997743311
Q ss_pred CcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCC---C---CCCCccccCCC
Q 039692 117 RSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKR---G---GYSGAAVWGSS 190 (417)
Q Consensus 117 ~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~---~---~~~gg~~~~~~ 190 (417)
.+..+++|.+....++++.+-.++.. .....+.+.++|..||+.+|..+....+...+ + ..++++.|.+
T Consensus 317 ~y~~tS~p~~~~~~~v~~g~v~Dn~s----t~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~- 391 (773)
T COG4993 317 LYYGTSPPEFGVKGIVIAGSVADNES----TWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWAS- 391 (773)
T ss_pred eEeecCCCcccceeEEEeeccCCCce----eeccCccccccccccCceEEccCCCCCCCCCCCCCCceeecCCCCcccc-
Confidence 12245666666666666554322211 11235788999999999999988753332211 1 3568899964
Q ss_pred ceeecccCcc---cCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCc
Q 039692 191 PAIDVIRRQK---QNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDAD 267 (417)
Q Consensus 191 pa~d~~~~~~---~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 267 (417)
.++|++.+.. .++....-...........+...++|+|++||+++|.++..+++.|+ +|
T Consensus 392 ~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWD------------------mD 453 (773)
T COG4993 392 ASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWD------------------MD 453 (773)
T ss_pred cccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhc------------------cc
Confidence 7999999863 23332222222333344557788999999999999999999999994 45
Q ss_pred cCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEE
Q 039692 268 FGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWF 309 (417)
Q Consensus 268 ~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~ 309 (417)
..+.|++.|+++||+....++.++++|.+|+||+.||+++=.
T Consensus 454 vp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRrtGe~lv~ 495 (773)
T COG4993 454 VPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRRTGELLVP 495 (773)
T ss_pred CCCCceEEEeecCCcEeeeeecccccCcEEEEEcCCCccccc
Confidence 678999999999999999999999999999999999998743
No 9
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.97 E-value=4e-29 Score=255.41 Aligned_cols=319 Identities=18% Similarity=0.251 Sum_probs=201.3
Q ss_pred cccCccccccceeeeEEEeCCc--------eeeCcEEEC-CEEEEeccCCcEEEEECCCCccceEeecccc------cCC
Q 039692 18 VLINPVTVRNLRLRWSFYAGKD--------ISATPAVAN-GVVYFPSWNGYLYAVNAFNGALIWEQNLSKL------TGL 82 (417)
Q Consensus 18 ~~i~~~~~~~~~~~W~~~~~~~--------~~~~p~~~~-g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------~~~ 82 (417)
..|.+.+..+++++|++++... +...+++.+ ++||+++.++.|+|||++||+++|++++... +.+
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~s 150 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTG 150 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecC
Confidence 4478888999999999988654 223345567 9999999999999999999999999998765 455
Q ss_pred cceeeEEee---------------eeeEEEEEecCCCceeeeeecCCCC-----------------CcceeeceeEE--c
Q 039692 83 SGTGIVVNV---------------TVAVVVAVSRSNGELVWSTQIDPRP-----------------RSQITMSGSVY--M 128 (417)
Q Consensus 83 ~p~~~v~~~---------------~v~~l~ald~~tG~~~W~~~~~~~~-----------------~~~~~~sp~v~--~ 128 (417)
+|. +.++ ..+.|+|||++||+++|++++.... ...+.++|++. +
T Consensus 151 sP~--v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~ 228 (488)
T cd00216 151 APT--IVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT 228 (488)
T ss_pred CCE--EECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC
Confidence 665 3322 1267999999999999999874221 01133467764 6
Q ss_pred CeEEEEeCCccCcc----ccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCC
Q 039692 129 GAFYVGLSSLEEAL----PADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQ 204 (417)
Q Consensus 129 ~~v~v~~~~~~~~~----~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~ 204 (417)
++||+++.++.... .........+.|+|||++||+++|+++..+...... .+ .+.|.+..... .
T Consensus 229 g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~---~~----~s~p~~~~~~~-----~ 296 (488)
T cd00216 229 NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY---DG----PNQPSLADIKP-----K 296 (488)
T ss_pred CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc---cc----CCCCeEEeccc-----c
Confidence 88999987531000 000001124589999999999999998743211000 00 01222221110 0
Q ss_pred CCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEe--cCC-
Q 039692 205 TTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIS--TNG- 281 (417)
Q Consensus 205 ~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~--~~G- 281 (417)
...| ...++....++.++|||++||+++|+++..... +. .....+.+... ..+
T Consensus 297 ~g~~---~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~---~~------------------~~~~~vyv~~~~~~~~~ 352 (488)
T cd00216 297 DGKP---VPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP---MA------------------YDPGLVYLGAFHIPLGL 352 (488)
T ss_pred CCCe---eEEEEEECCCceEEEEECCCCcEeeEeEeeccc---cc------------------cCCceEEEccccccccC
Confidence 0000 124667778899999999999999998764211 00 00000111000 000
Q ss_pred -eeeeEEEEEcccceEEEEECCCCcEEEEeecCC---------CCCCCc-----ceecccccCCeEEEEeccCCceeeee
Q 039692 282 -RFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGP---------GGREGG-----GVWGAATDGRRVYTNIVNNDRIIWST 346 (417)
Q Consensus 282 -~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~---------~~~~g~-----~~~~~~~~~~~vy~~~~~~~~~~W~~ 346 (417)
......+....+|.|+|||+.||+++|+.+.+. +...+. ....+...++.||+.+.++++++|+.
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 000112223457899999999999999999751 100000 01111224577888888999999999
Q ss_pred cCCCCCCCcccee-eeCCeEEeccCCCCCC
Q 039692 347 ADPSNETAHGPVT-VVNGVLFAGSVSANGS 375 (417)
Q Consensus 347 ~~~~~~~~~~p~~-~~~~~v~~~~~~g~g~ 375 (417)
+.+ ....++|++ +.++.+|++..+|.+.
T Consensus 433 ~~~-~~~~a~P~~~~~~g~~yv~~~~g~~~ 461 (488)
T cd00216 433 RTP-SGIQATPMTYEVNGKQYVGVMVGGGG 461 (488)
T ss_pred ECC-CCceEcCEEEEeCCEEEEEEEecCCc
Confidence 986 477888885 6789999999877644
No 10
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.94 E-value=1.6e-24 Score=222.14 Aligned_cols=336 Identities=16% Similarity=0.182 Sum_probs=202.0
Q ss_pred ccCccccccceeeeEEEeCCc-----------eeeCcEEECCEEEEeccCCcEEEEECCCCccceEeeccc-----ccCC
Q 039692 19 LINPVTVRNLRLRWSFYAGKD-----------ISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK-----LTGL 82 (417)
Q Consensus 19 ~i~~~~~~~~~~~W~~~~~~~-----------~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~ 82 (417)
.|.+.++.+++++|++..... +...|++.+++||+++.++.|+|||++|||++|++.+.. .+.+
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~ts 159 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITA 159 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccC
Confidence 478889999999999987532 134578899999999999999999999999999998753 2334
Q ss_pred cceeeEEee--e----------eeEEEEEecCCCceeeeeecCCCC----------------------------Ccceee
Q 039692 83 SGTGIVVNV--T----------VAVVVAVSRSNGELVWSTQIDPRP----------------------------RSQITM 122 (417)
Q Consensus 83 ~p~~~v~~~--~----------v~~l~ald~~tG~~~W~~~~~~~~----------------------------~~~~~~ 122 (417)
+|. +.++ + .+.|+|||++||+++|++...++. ...+-.
T Consensus 160 sP~--v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~ 237 (527)
T TIGR03075 160 APL--VVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWG 237 (527)
T ss_pred CcE--EECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccC
Confidence 554 3333 1 268999999999999998864321 112233
Q ss_pred ceeEE--cCeEEEEeCCccC--ccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccC
Q 039692 123 SGSVY--MGAFYVGLSSLEE--ALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRR 198 (417)
Q Consensus 123 sp~v~--~~~v~v~~~~~~~--~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~ 198 (417)
+++++ .+.||+++.+... ...+.....+...|+|||++|||++|.++..+.+.-+..... ....+|....
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~------~p~l~d~~~~ 311 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN------EMILFDLKKD 311 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC------CcEEEEeccC
Confidence 44554 4679999977332 112233344566999999999999999999876543221100 1112221111
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeec-------------------cCCCCCCCC
Q 039692 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTC-------------------LVPNNPDCP 259 (417)
Q Consensus 199 ~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~-------------------~~~~~~~c~ 259 (417)
.. ....+....-+|.+|+||++|||.+|..+..+...|.-.- .......|+
T Consensus 312 -------G~---~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~P 381 (527)
T TIGR03075 312 -------GK---PRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCP 381 (527)
T ss_pred -------Cc---EEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECC
Confidence 00 0013445567899999999999998654333322221000 000112344
Q ss_pred CCCC------CCCccCCCceEEEEe-----cCCee----eeEEEEE----------cccceEEEEECCCCcEEEEeecCC
Q 039692 260 PGPN------LDADFGEAPMLLTIS-----TNGRF----RDVVVAV----------QKSGFAWAFDRDSGDIIWFKLAGP 314 (417)
Q Consensus 260 ~~~~------~~~~~~~~p~v~~~~-----~~G~~----~~~v~~~----------~~~G~l~ald~~tG~~lW~~~~~~ 314 (417)
...+ ..+|-...-+.+... ..+.. ....|++ ...|.|.|||+.|||++|+++.+.
T Consensus 382 g~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~ 461 (527)
T TIGR03075 382 GFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF 461 (527)
T ss_pred CCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC
Confidence 2100 000000000100000 00000 0001111 124789999999999999998642
Q ss_pred CCCCCc-----ceecccccCCeEEEEeccCCceeeeecCCCCCCCcccee-eeCCeEEeccCCCC
Q 039692 315 GGREGG-----GVWGAATDGRRVYTNIVNNDRIIWSTADPSNETAHGPVT-VVNGVLFAGSVSAN 373 (417)
Q Consensus 315 ~~~~g~-----~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~-~~~~~v~~~~~~g~ 373 (417)
+...+. ........++.+++.|.++++++|+.+.+ ....++|++ ..++.+|+....|.
T Consensus 462 p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g-~~~~a~P~ty~~~G~qYv~~~~G~ 525 (527)
T TIGR03075 462 PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG-SGIVGPPVTYEQDGKQYVAVLSGW 525 (527)
T ss_pred CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC-CCceecCEEEEeCCEEEEEEEecc
Confidence 211111 11111234678899999999999999987 477888885 37788888766553
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.92 E-value=6.4e-24 Score=196.83 Aligned_cols=224 Identities=25% Similarity=0.451 Sum_probs=160.0
Q ss_pred ccCccccccceeeeEEEeCCce---eeCcEEECCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee--ee
Q 039692 19 LINPVTVRNLRLRWSFYAGKDI---SATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV--TV 93 (417)
Q Consensus 19 ~i~~~~~~~~~~~W~~~~~~~~---~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~--~v 93 (417)
.|.+.|..+++++|++.+.... ...++..++.+|+.+.++.|+|+|++||+++|++++...+...|. +.++ ++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~--~~~~~v~v 81 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV--VDGGRVYV 81 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE--EETTEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee--eccccccc
Confidence 3778888999999999985433 334566899999999999999999999999999999776655553 4443 22
Q ss_pred ----eEEEEEecCCCceeeee-ecCCCC-CcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceece
Q 039692 94 ----AVVVAVSRSNGELVWST-QIDPRP-RSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167 (417)
Q Consensus 94 ----~~l~ald~~tG~~~W~~-~~~~~~-~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~ 167 (417)
+.|+|||++||+++|+. ....+. ......++.+.++.+|++.. ++.|+++|++||+++|+
T Consensus 82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------------SGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--------------CSEEEEEETTTTEEEEE
T ss_pred ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--------------cCcEEEEecCCCcEEEE
Confidence 79999999999999995 533221 12234556677899999886 38999999999999999
Q ss_pred eeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCccee
Q 039692 168 TYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFY 247 (417)
Q Consensus 168 ~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~ 247 (417)
++....... . .+. ........|+..++.++.....+.++++|.++|+++|+.......
T Consensus 148 ~~~~~~~~~-------------~-~~~-----~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~--- 205 (238)
T PF13360_consen 148 YPVGEPRGS-------------S-PIS-----SFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKPISGIY--- 205 (238)
T ss_dssp EESSTT-SS----------------EE-----EETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEECSS-EC---
T ss_pred eecCCCCCC-------------c-cee-----eecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEecCCCcc---
Confidence 988321110 0 000 000011233344456777777788999999999999966632210
Q ss_pred eeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 248 FTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 248 ~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
..|... ++.||+.+.+++|+++|++||+++|+.
T Consensus 206 ----------------------~~~~~~--------~~~l~~~~~~~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 206 ----------------------SLPSVD--------GGTLYVTSSDGRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp ----------------------ECEECC--------CTEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred ----------------------CCceee--------CCEEEEEeCCCEEEEEECCCCCEEeEC
Confidence 123332 578888888999999999999999974
No 12
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=8.6e-23 Score=181.90 Aligned_cols=238 Identities=21% Similarity=0.316 Sum_probs=179.4
Q ss_pred eeeEEEeCCceeeCcEEE-C---CEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEeee------eeEEEEE
Q 039692 30 LRWSFYAGKDISATPAVA-N---GVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVT------VAVVVAV 99 (417)
Q Consensus 30 ~~W~~~~~~~~~~~p~~~-~---g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~------v~~l~al 99 (417)
.+|+..++..+.++|++. + -.||++++.+++.|+|+++|+++|+.-++..+..+++ +.+.+ -+.||.|
T Consensus 1 ~rW~vd~~kCVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~--vvgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 1 MRWAVDLRKCVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI--VVGDFVVLGCYSGGLYFL 78 (354)
T ss_pred CceeccchhhccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE--EECCEEEEEEccCcEEEE
Confidence 379999999999999876 4 4799999999999999999999999999999888777 43332 2999999
Q ss_pred ecCCCceeeeeecCCCCCcceeeceeE--EcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCC
Q 039692 100 SRSNGELVWSTQIDPRPRSQITMSGSV--YMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGK 177 (417)
Q Consensus 100 d~~tG~~~W~~~~~~~~~~~~~~sp~v--~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 177 (417)
+.+||++.|.+.+-++ +...|.. ..+.+|.+++ ++.+||||+++-.-+|+.+.
T Consensus 79 ~~~tGs~~w~f~~~~~----vk~~a~~d~~~glIycgsh--------------d~~~yalD~~~~~cVykskc------- 133 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILET----VKVRAQCDFDGGLIYCGSH--------------DGNFYALDPKTYGCVYKSKC------- 133 (354)
T ss_pred Eecchhheeeeeehhh----hccceEEcCCCceEEEecC--------------CCcEEEecccccceEEeccc-------
Confidence 9999999999997654 4444543 3678999988 69999999999999999655
Q ss_pred CCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCC--ceEEEecCCCCcceeeeccCCCC
Q 039692 178 RGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSG--RIAWAKPLGGYDIFYFTCLVPNN 255 (417)
Q Consensus 178 ~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~ 255 (417)
||.++ ++|++++. +..+|+....|.+.|+.++++ .+.|.+.....
T Consensus 134 -----gG~~f-~sP~i~~g---------------~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~P------------ 180 (354)
T KOG4649|consen 134 -----GGGTF-VSPVIAPG---------------DGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGP------------ 180 (354)
T ss_pred -----CCcee-ccceecCC---------------CceEEEEeccceEEEEccCCCCcceehhhhcCCc------------
Confidence 23333 24676653 344677888899999999999 89998876543
Q ss_pred CCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCcceeccc------ccC
Q 039692 256 PDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAA------TDG 329 (417)
Q Consensus 256 ~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~------~~~ 329 (417)
+.++|+-. +..+..++-||.|.++| ..|+++|+.....+-+.+.....|. -.+
T Consensus 181 ------------iF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~ 239 (354)
T KOG4649|consen 181 ------------IFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENE 239 (354)
T ss_pred ------------cccCceec--------cceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecC
Confidence 12456655 45677788899999999 8899999887642222222111122 134
Q ss_pred CeEEEEeccCCceeeeecC
Q 039692 330 RRVYTNIVNNDRIIWSTAD 348 (417)
Q Consensus 330 ~~vy~~~~~~~~~~W~~~~ 348 (417)
+-+|......+-++|+.+.
T Consensus 240 ~Cf~~~~p~~ghL~w~~~~ 258 (354)
T KOG4649|consen 240 NCFCAPLPIAGHLLWATQS 258 (354)
T ss_pred CeEEEeccccceEEEEecC
Confidence 5666666666888898765
No 13
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.89 E-value=2.4e-21 Score=204.31 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=172.2
Q ss_pred CCcccCccccccceeeeEEEeCCc----------------eeeCcEEECCEEEEecc----------CCcEEEEECCCCc
Q 039692 16 GEVLINPVTVRNLRLRWSFYAGKD----------------ISATPAVANGVVYFPSW----------NGYLYAVNAFNGA 69 (417)
Q Consensus 16 ~~~~i~~~~~~~~~~~W~~~~~~~----------------~~~~p~~~~g~v~v~~~----------~g~l~ald~~tG~ 69 (417)
.+..|.+.|+++|+++|+|...+. +.++|++.+++||+++. .|.|+|||++|||
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 344578889999999999875432 36889999999999853 6899999999999
Q ss_pred cceEeecccccCC------------cc-----e------eeEE--------------e-----eeeeEEEEEecCCCcee
Q 039692 70 LIWEQNLSKLTGL------------SG-----T------GIVV--------------N-----VTVAVVVAVSRSNGELV 107 (417)
Q Consensus 70 ~~W~~~~~~~~~~------------~p-----~------~~v~--------------~-----~~v~~l~ald~~tG~~~ 107 (417)
++|++....+... .+ . +++. + .+-+.|+|||++|||++
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 9999986421100 00 0 0100 0 01199999999999999
Q ss_pred eeeecCCCC--CcceeeceeEE-----cC----eEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCC
Q 039692 108 WSTQIDPRP--RSQITMSGSVY-----MG----AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGG 176 (417)
Q Consensus 108 W~~~~~~~~--~~~~~~sp~v~-----~~----~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 176 (417)
|++++-+.. ...+.+.|++. ++ .|+++.. +|.+|+||++||+++|..+..+-..+
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K--------------~G~~~vlDr~tG~~l~~~~e~~vp~~ 493 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK--------------QGQIYVLDRRTGEPIVPVEEVPVPQG 493 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC--------------CCEEEEEECCCCCEEeeceeecCCcc
Confidence 999974332 22355667653 45 4666665 59999999999999998665321000
Q ss_pred -----------------------------------------------------C---C-----CCCCCccccCCCceeec
Q 039692 177 -----------------------------------------------------K---R-----GGYSGAAVWGSSPAIDV 195 (417)
Q Consensus 177 -----------------------------------------------------~---~-----~~~~gg~~~~~~pa~d~ 195 (417)
. . -...|+..|+. .++|+
T Consensus 494 ~~~ge~~sptQp~~~~~~~~~~~~~~d~~g~t~~dq~~cr~~~~~~~~~g~~tPps~~~~~~~Pg~~Gg~nW~~-~a~dP 572 (764)
T TIGR03074 494 AVPGERYSPTQPFSVLTFGPPTLTESDMWGATPFDQLACRIQFKSLRYEGLYTPPSEQGSLVFPGNLGGFNWGG-VAVDP 572 (764)
T ss_pred CCCCccccccccccccccCCcccchhhccCCChhHhhhhhhhhcccccCCCcCCCCCCceEEecCCcccCCCCC-ceECC
Confidence 0 0 02357788874 68999
Q ss_pred ccCcccCCCCCC-----------------------------CCCCCCc-------------ccCCCCCCeEEEEECCCCc
Q 039692 196 IRRQKQNNQTTK-----------------------------PTHPDQC-------------ISSDIYANSIVALDIDSGR 233 (417)
Q Consensus 196 ~~~~~~~~~~~~-----------------------------p~~~~~~-------------v~~~~~~~~l~ald~~tG~ 233 (417)
+++..+.+...- |.....+ ......-+.|.|+|++|||
T Consensus 573 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~py~~~~~~~~~~~g~p~~~pp~G~l~AiDl~tGk 652 (764)
T TIGR03074 573 TRQVMFVNPMRLPFVSQLVPRAPGDEAPSGAKGKGTEMGLNPNKGTPYAVNMNPFLSPLGIPCQAPPWGYMAAIDLKTGK 652 (764)
T ss_pred CCCEEEEEChhcceeeEeeeccccccccccccccccccccccCCCCcceeecccccCcccCCCCCCCcEEEEEEECCCCc
Confidence 998532211000 0000000 0001234789999999999
Q ss_pred eEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEE-EcccceEEEEECCCCcEEEEeec
Q 039692 234 IAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVA-VQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 234 ~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~-~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
++|+.+.+......-..+ + .+ .+.. .-....+.+++. .++++|+ ++.|+.|+|||++|||++|+.++
T Consensus 653 ~~W~~~~g~~~~~~p~~~-~-~~--~~~~-~g~p~~gG~l~T-------agglvF~~gt~d~~l~A~D~~tGk~lW~~~l 720 (764)
T TIGR03074 653 VVWQHPNGTVRDTGPMGI-R-MP--LPIP-IGVPTLGGPLAT-------AGGLVFIGATQDNYLRAYDLSTGKELWKARL 720 (764)
T ss_pred EeeeeECCcccccccccc-c-cc--cccc-cCCcccCCcEEE-------cCCEEEEEeCCCCEEEEEECCCCceeeEeeC
Confidence 999999864321100000 0 00 0000 000111344554 2578887 68999999999999999999998
Q ss_pred C
Q 039692 313 G 313 (417)
Q Consensus 313 ~ 313 (417)
+
T Consensus 721 ~ 721 (764)
T TIGR03074 721 P 721 (764)
T ss_pred C
Confidence 6
No 14
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=186.09 Aligned_cols=230 Identities=22% Similarity=0.306 Sum_probs=163.1
Q ss_pred cCccccccceeeeEEEeCC---ceeeCc--EEECCEEEEeccCCcEEEEECCCCccceEeeccc--ccCCcceeeEEee-
Q 039692 20 INPVTVRNLRLRWSFYAGK---DISATP--AVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK--LTGLSGTGIVVNV- 91 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~---~~~~~p--~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~p~~~v~~~- 91 (417)
....+..+++++|.+.+.. .+...| ++.++++|+...+|.|+|||+++|+++|+..+.. .....|.. +.++
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~-~~~G~ 113 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPIL-GSDGK 113 (370)
T ss_pred eEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceE-EeCCe
Confidence 3344466799999977544 344455 8889999999999999999999999999999885 23333432 3334
Q ss_pred -ee----eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceec
Q 039692 92 -TV----AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIW 166 (417)
Q Consensus 92 -~v----~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W 166 (417)
++ +++||||.+||+++|+++... . ..+..+|++.++.||+.+. +++++|+|++||+++|
T Consensus 114 i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s~--------------~g~~~al~~~tG~~~W 177 (370)
T COG1520 114 IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGTD--------------DGHLYALNADTGTLKW 177 (370)
T ss_pred EEEecccceEEEEECCCCcEEEEEecCC-C-eEEecCcEEcCcEEEEecC--------------CCeEEEEEccCCcEEE
Confidence 22 889999999999999999876 2 3456677788899999864 5899999999999999
Q ss_pred eeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCC--CCeEEEEECCCCceEEEecCCCCc
Q 039692 167 QTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIY--ANSIVALDIDSGRIAWAKPLGGYD 244 (417)
Q Consensus 167 ~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~--~~~l~ald~~tG~~~W~~~~~~~~ 244 (417)
+++.... .. .. ....|...++.+|.... ++.++|+|+++|+++|+.+.....
T Consensus 178 ~~~~~~~-~~-------~~------------------~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~ 231 (370)
T COG1520 178 TYETPAP-LS-------LS------------------IYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTI 231 (370)
T ss_pred EEecCCc-cc-------cc------------------cccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeeccc
Confidence 9887431 10 00 01223334455565555 568999999999999996433211
Q ss_pred ceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecC
Q 039692 245 IFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 245 ~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~ 313 (417)
... ... ...++...++.. +..+|....+|.++|+|..+|+++|+++.+
T Consensus 232 ~~~------------~~~-~~~~~~~~~v~v--------~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 232 GRT------------AIS-TTPAVDGGPVYV--------DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred Ccc------------ccc-ccccccCceEEE--------CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 000 000 001234566666 445688888899999999999999999973
No 15
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.87 E-value=1.6e-20 Score=173.90 Aligned_cols=224 Identities=24% Similarity=0.429 Sum_probs=145.3
Q ss_pred CCcEEEEECCCCccceEeecccccCCcce-eeEEeee--e----eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcC
Q 039692 57 NGYLYAVNAFNGALIWEQNLSKLTGLSGT-GIVVNVT--V----AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMG 129 (417)
Q Consensus 57 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~-~~v~~~~--v----~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~ 129 (417)
+|.|.|+|+++|+++|+..+.......++ .+..++. + +.|+|+|++||+++|+++++.+ +...|++.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~~~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISGAPVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGSGEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccceeeeccc
Confidence 68999999999999999998543322221 1123332 1 9999999999999999998543 4445888999
Q ss_pred eEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee-eecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCC
Q 039692 130 AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT-YMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKP 208 (417)
Q Consensus 130 ~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p 208 (417)
.||+... ++.|+++|.+||+++|+. ........ ......++++
T Consensus 78 ~v~v~~~--------------~~~l~~~d~~tG~~~W~~~~~~~~~~~--------~~~~~~~~~~-------------- 121 (238)
T PF13360_consen 78 RVYVGTS--------------DGSLYALDAKTGKVLWSIYLTSSPPAG--------VRSSSSPAVD-------------- 121 (238)
T ss_dssp EEEEEET--------------TSEEEEEETTTSCEEEEEEE-SSCTCS--------TB--SEEEEE--------------
T ss_pred ccccccc--------------eeeeEecccCCcceeeeeccccccccc--------cccccCceEe--------------
Confidence 9999886 479999999999999995 43211100 0000112222
Q ss_pred CCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcce-eeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEE
Q 039692 209 THPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIF-YFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVV 287 (417)
Q Consensus 209 ~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v 287 (417)
+..++.....+.|+++|++||+++|+++....... .+.. -.+..+.|++. ++.|
T Consensus 122 ---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--------------~~~~~~~~~~~--------~~~v 176 (238)
T PF13360_consen 122 ---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS--------------FSDINGSPVIS--------DGRV 176 (238)
T ss_dssp ---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE--------------ETTEEEEEECC--------TTEE
T ss_pred ---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee--------------ecccccceEEE--------CCEE
Confidence 23344555589999999999999999988442210 0000 00011233333 3489
Q ss_pred EEEcccceEEEEECCCCcEEEEeecCC----CCCCCcceecccccCCeEEEEeccCCceeeee
Q 039692 288 VAVQKSGFAWAFDRDSGDIIWFKLAGP----GGREGGGVWGAATDGRRVYTNIVNNDRIIWST 346 (417)
Q Consensus 288 ~~~~~~G~l~ald~~tG~~lW~~~~~~----~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~ 346 (417)
|+.+.+|.++++|.++|+++|+..... ....+...+ ....++.|++.+.++++++|++
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLY-VTSSDGRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp EEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEE-EEETTTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEE-EEeCCCEEEEEECCCCCEEeEC
Confidence 999999989999999999999666321 001111111 1124577777788888999974
No 16
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.80 E-value=1.3e-17 Score=165.28 Aligned_cols=266 Identities=23% Similarity=0.365 Sum_probs=172.3
Q ss_pred ccCccccccceeeeEEEeCC--ceeeCc-EEECCEEEEeccCCcEEEEECCCCccceEeeccc-ccCCcceeeEEeee--
Q 039692 19 LINPVTVRNLRLRWSFYAGK--DISATP-AVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK-LTGLSGTGIVVNVT-- 92 (417)
Q Consensus 19 ~i~~~~~~~~~~~W~~~~~~--~~~~~p-~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~~~v~~~~-- 92 (417)
.|.+.|+.+++++|+..+.. ...++| ++.+|+||+++.++++||||.++|+++|+++... ..-..++ ++.++.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~-v~~~~~v~ 157 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP-VVGDGTVY 157 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc-EEcCcEEE
Confidence 47888999999999999985 444445 5557999999999999999999999999999998 2222232 133331
Q ss_pred ----eeEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 93 ----VAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 93 ----v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
.++++|||++||+++|+++..........++|.+.++.+|++..+ . ++.++|+|+++|+.+|+.
T Consensus 158 ~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~--~----------~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 158 VGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG--Y----------DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred EecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC--C----------cceEEEEEccCCcEeeee
Confidence 299999999999999999875422234677788889999998762 0 258999999999999997
Q ss_pred eecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceee
Q 039692 169 YMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYF 248 (417)
Q Consensus 169 ~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~ 248 (417)
+....... ..+. ..++++ ..++..++.++.....+.++|+|..+|+++|+++.....
T Consensus 226 ~~~~~~~~-------~~~~-~~~~~~-----------~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~---- 282 (370)
T COG1520 226 KVSQTIGR-------TAIS-TTPAVD-----------GGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSV---- 282 (370)
T ss_pred eeecccCc-------cccc-cccccc-----------CceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEe----
Confidence 65321100 0000 011111 223333444456667788999999999999999986111
Q ss_pred eccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEc--c----cceEEEEECCCCcE--EEEeecCCCCCCCc
Q 039692 249 TCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQ--K----SGFAWAFDRDSGDI--IWFKLAGPGGREGG 320 (417)
Q Consensus 249 ~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~--~----~G~l~ald~~tG~~--lW~~~~~~~~~~g~ 320 (417)
.+.+++......+ +..+|... . .+.++|++..+|.. .|....+- ..
T Consensus 283 --------------------~~~~~~~~~~~~~--dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g----~~ 336 (370)
T COG1520 283 --------------------QGSGLYTTPVAGA--DGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGG----GY 336 (370)
T ss_pred --------------------ccCCeeEEeecCC--CccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCC----ce
Confidence 1233332211111 22333332 2 24578888877777 88888641 11
Q ss_pred ceecccccCCeEEEEeccCCceeeeec
Q 039692 321 GVWGAATDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 321 ~~~~~~~~~~~vy~~~~~~~~~~W~~~ 347 (417)
....++..++.+|....++. .++.+.
T Consensus 337 ~~~~~~~~~g~~y~~~~~~~-~ly~~~ 362 (370)
T COG1520 337 SLSTVAGSDGTLYFGGDDGR-GLYAFR 362 (370)
T ss_pred ecccceeccCeEEecccCCc-eEEEEc
Confidence 12234556666776655443 444443
No 17
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=2.5e-15 Score=134.50 Aligned_cols=215 Identities=17% Similarity=0.304 Sum_probs=160.2
Q ss_pred cCccccccceeeeEEEeCCceeeCcEEECCEEEEeccCCcEEEEECCCCccceEeecccccCCcce-----eeEEee-ee
Q 039692 20 INPVTVRNLRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGT-----GIVVNV-TV 93 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~-----~~v~~~-~v 93 (417)
+.+.|..++++.|..-++..+..++.+.++.|.++..+|.||.|+.+||++.|.+..-+.+...+. +++.-+ -.
T Consensus 35 ~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd 114 (354)
T KOG4649|consen 35 VIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHD 114 (354)
T ss_pred EEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCC
Confidence 456778899999999999999999999999999999999999999999999999998876655443 112211 23
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEE--cCeEEEEeCCccCccccCcccCCCceEEEEeCCCC--ceeceee
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVY--MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNG--RIIWQTY 169 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~--~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG--~~~W~~~ 169 (417)
+++||||.++-.-+|+.+.++ .+..+|++. ++.+|+.... |.+.|..++++ .+.|.+.
T Consensus 115 ~~~yalD~~~~~cVykskcgG----~~f~sP~i~~g~~sly~a~t~--------------G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 115 GNFYALDPKTYGCVYKSKCGG----GTFVSPVIAPGDGSLYAAITA--------------GAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred CcEEEecccccceEEecccCC----ceeccceecCCCceEEEEecc--------------ceEEEEccCCCCcceehhhh
Confidence 999999999999999988664 477888875 5679998874 89999999999 9999987
Q ss_pred ecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeee
Q 039692 170 MLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFT 249 (417)
Q Consensus 170 ~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~ 249 (417)
... .++++ |..-...+..+.-+|.+.++| .+|+++|++.+.+. .|.
T Consensus 177 ~~~------------PiF~s------------------plcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~Gp-If~-- 222 (354)
T KOG4649|consen 177 RFG------------PIFAS------------------PLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGP-IFM-- 222 (354)
T ss_pred cCC------------ccccC------------------ceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCc-eec--
Confidence 731 22222 222222233445679999999 78999998887654 221
Q ss_pred ccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecC
Q 039692 250 CLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 250 ~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~ 313 (417)
..|- +.|. .+.|+.. .++-+++..+..|.++|..+.+
T Consensus 223 ------~Pc~----------s~Ps----------~q~i~~~-~~~Cf~~~~p~~ghL~w~~~~g 259 (354)
T KOG4649|consen 223 ------EPCE----------SRPS----------CQQISLE-NENCFCAPLPIAGHLLWATQSG 259 (354)
T ss_pred ------cccc----------CCCc----------ceEEEEe-cCCeEEEeccccceEEEEecCC
Confidence 0111 1122 1344444 4567888888889999999974
No 18
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1e-12 Score=130.27 Aligned_cols=206 Identities=17% Similarity=0.257 Sum_probs=127.9
Q ss_pred cCccccccceeeeEEEeCCceeeCc------------EEECC------EEEEeccCCcEEEEECCCCccceEeeccccc-
Q 039692 20 INPVTVRNLRLRWSFYAGKDISATP------------AVANG------VVYFPSWNGYLYAVNAFNGALIWEQNLSKLT- 80 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~~~~~~p------------~~~~g------~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~- 80 (417)
+.+.++++++++|+++...+..-.| ...+. +||+.+.|.+|.|||++|||+.|++...+..
T Consensus 226 v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~ 305 (773)
T COG4993 226 VFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALN 305 (773)
T ss_pred eEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceee
Confidence 5677789999999999865322111 12333 4999999999999999999999998776421
Q ss_pred --------------CCccee-----eEEeeee----------eEEEEEecCCCceeeeeecCCCCC--------cceeec
Q 039692 81 --------------GLSGTG-----IVVNVTV----------AVVVAVSRSNGELVWSTQIDPRPR--------SQITMS 123 (417)
Q Consensus 81 --------------~~~p~~-----~v~~~~v----------~~l~ald~~tG~~~W~~~~~~~~~--------~~~~~s 123 (417)
..||.. ++..+.+ +.+.++|.-+|+..|..+...... ..-..+
T Consensus 306 l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~ns 385 (773)
T COG4993 306 LETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNS 385 (773)
T ss_pred eeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCCCCCCCceeecCC
Confidence 122321 1111111 889999999999999988532211 111222
Q ss_pred ee------EE--cCeEEEEeCCccC----ccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCc
Q 039692 124 GS------VY--MGAFYVGLSSLEE----ALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSP 191 (417)
Q Consensus 124 p~------v~--~~~v~v~~~~~~~----~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~p 191 (417)
|. .+ -+.||++..+... ........++...++|+|+.||+.+|.+++.+.+.-+.... ..|
T Consensus 386 pn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWDmDvp-------~qp 458 (773)
T COG4993 386 PNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWDMDVP-------AQP 458 (773)
T ss_pred CCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhcccCC-------CCc
Confidence 32 22 3569998887321 11234455678899999999999999999977654322110 112
Q ss_pred eeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCC
Q 039692 192 AIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLG 241 (417)
Q Consensus 192 a~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~ 241 (417)
++-.-+.. -...| .++...-+|.+|.||.+||+++=..++.
T Consensus 459 ~L~D~~~D----G~~vp-----alv~ptk~G~~YVlDRrtGe~lv~~~ev 499 (773)
T COG4993 459 TLLDITKD----GKVVP-----ALVHPTKNGFIYVLDRRTGELLVPIPEV 499 (773)
T ss_pred eEEEeecC----CcEee-----eeecccccCcEEEEEcCCCccccccccc
Confidence 21111100 00011 1233456789999999999987655543
No 19
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=98.60 E-value=7.6e-08 Score=62.98 Aligned_cols=40 Identities=40% Similarity=0.663 Sum_probs=29.7
Q ss_pred ceeeeEEEeCCceeeCcEEECCEEEEeccCCcEEEEECCC
Q 039692 28 LRLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFN 67 (417)
Q Consensus 28 ~~~~W~~~~~~~~~~~p~~~~g~v~v~~~~g~l~ald~~t 67 (417)
|+++|+++++..+.++|++.+++||+++.+|+|+|||++|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 5789999999999999999999999999999999999875
No 20
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=98.41 E-value=5.6e-07 Score=58.10 Aligned_cols=36 Identities=33% Similarity=0.596 Sum_probs=32.0
Q ss_pred CEEEEeccCCcEEEEECCCCccceEeecccccCCcc
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSG 84 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 84 (417)
|+||+++.+|.|+|||++||+++|+++......+.|
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p 36 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSP 36 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCB
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCc
Confidence 579999999999999999999999999987665555
No 21
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=98.28 E-value=1.5e-06 Score=56.82 Aligned_cols=40 Identities=35% Similarity=0.528 Sum_probs=28.2
Q ss_pred CceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCC
Q 039692 104 GELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161 (417)
Q Consensus 104 G~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~t 161 (417)
|+++|+++++. .+.++|++.++.||++.. ++.|+|||++|
T Consensus 1 G~~~W~~~~~~----~~~~~~~v~~g~vyv~~~--------------dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGG----PIWSSPAVAGGRVYVGTG--------------DGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-T--------------TSEEEEEETT-
T ss_pred CceeEEEECCC----CcCcCCEEECCEEEEEcC--------------CCEEEEEeCCC
Confidence 79999999864 367889999999999987 59999999975
No 22
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=97.95 E-value=1.6e-05 Score=49.30 Aligned_cols=31 Identities=35% Similarity=0.756 Sum_probs=27.7
Q ss_pred EEECCEEEEeccCCcEEEEECCCCccceEee
Q 039692 45 AVANGVVYFPSWNGYLYAVNAFNGALIWEQN 75 (417)
Q Consensus 45 ~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~ 75 (417)
+..++.+|+++.++.|+|+|+++|+++|+++
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 4557799999999999999999999999864
No 23
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.93 E-value=0.0049 Score=60.19 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=76.5
Q ss_pred cEEECCEEEEeccC-----CcEEEEECCCCccceEeeccccc--CCccee---eEEee---------eeeEEEEEecCCC
Q 039692 44 PAVANGVVYFPSWN-----GYLYAVNAFNGALIWEQNLSKLT--GLSGTG---IVVNV---------TVAVVVAVSRSNG 104 (417)
Q Consensus 44 p~~~~g~v~v~~~~-----g~l~ald~~tG~~~W~~~~~~~~--~~~p~~---~v~~~---------~v~~l~ald~~tG 104 (417)
|.....++|+.+.. +.++.||.++++++=..+.+... ..+|-+ .+... --..|..+|.+|+
T Consensus 8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 8 PASDARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCCCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 33455678888765 89999999999999888876421 123321 12222 1289999999999
Q ss_pred ceeeeeecCCCCCc-------ceeeceeEEcC-eEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 105 ELVWSTQIDPRPRS-------QITMSGSVYMG-AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 105 ~~~W~~~~~~~~~~-------~~~~sp~v~~~-~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
+++.+.++++.+.. .+.-+| +| .+||.... ++..+..+|.++++.+=+.+.
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~------------p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFS------------PSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCC------------CCCEEEEEECCCCcEEEEEeC
Confidence 99999998654221 122222 44 57876643 257899999999999988876
No 24
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=97.88 E-value=2.9e-05 Score=49.99 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=26.0
Q ss_pred EEEEEcccceEEEEECCCCcEEEEeecC
Q 039692 286 VVVAVQKSGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 286 ~v~~~~~~G~l~ald~~tG~~lW~~~~~ 313 (417)
.||+++.+|.|+|||++||+++|+++.+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 5788899999999999999999999975
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.67 E-value=0.017 Score=52.75 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=108.0
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccc-c---CCccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCCccee
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKL-T---GLSGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQIT 121 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~---~~~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~ 121 (417)
+..+++++.++.+..+|.++++.......... + ...|.+ ++..+..+.++.+|..+++.+.+..........+.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 35677777789999999998887666654421 1 011111 11111238888999888877776663221111112
Q ss_pred eceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCccc
Q 039692 122 MSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQ 201 (417)
Q Consensus 122 ~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~ 201 (417)
..| ++.+++.... ++.+..+|..+++....+...... + ....+.+.
T Consensus 101 ~~~---~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~-----------i--~~~~~~~~----- 146 (289)
T cd00200 101 FSP---DGRILSSSSR-------------DKTIKVWDVETGKCLTTLRGHTDW-----------V--NSVAFSPD----- 146 (289)
T ss_pred EcC---CCCEEEEecC-------------CCeEEEEECCCcEEEEEeccCCCc-----------E--EEEEEcCc-----
Confidence 122 3445544432 589999999988887766531110 0 01122221
Q ss_pred CCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCC
Q 039692 202 NNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNG 281 (417)
Q Consensus 202 ~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G 281 (417)
...++.+..++.+..+|.++++.+..+....... .... ...+
T Consensus 147 ----------~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i------------------------~~~~---~~~~- 188 (289)
T cd00200 147 ----------GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV------------------------NSVA---FSPD- 188 (289)
T ss_pred ----------CCEEEEEcCCCcEEEEEccccccceeEecCcccc------------------------ceEE---ECCC-
Confidence 1223333447889999998888777665322110 0111 1112
Q ss_pred eeeeEEEEEcccceEEEEECCCCcEEEEee
Q 039692 282 RFRDVVVAVQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 282 ~~~~~v~~~~~~G~l~ald~~tG~~lW~~~ 311 (417)
++.+++++.+|.+..+|..+++.+-...
T Consensus 189 --~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 189 --GEKLLSSSSDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred --cCEEEEecCCCcEEEEECCCCceecchh
Confidence 3467777779999999999988776553
No 26
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=97.55 E-value=0.00015 Score=70.60 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=39.3
Q ss_pred CCCeEEEEECCC-CceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEE
Q 039692 220 YANSIVALDIDS-GRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWA 298 (417)
Q Consensus 220 ~~~~l~ald~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~a 298 (417)
....||.+|++| |+++|+........ ..+.|.++|...+|. -+.+|+++..|.|+.
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~----------------------gl~~~~~~D~d~DG~-~D~vYaGDl~GnlwR 235 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSG----------------------GLSSPAVVDSDGDGY-VDRVYAGDLGGNLWR 235 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-----------------------EEEEEEE-TTSSSE-E-EEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCc----------------------cccccEEEeccCCCe-EEEEEEEcCCCcEEE
Confidence 346799999999 99999987644321 115677777667776 578999999999999
Q ss_pred EECCC
Q 039692 299 FDRDS 303 (417)
Q Consensus 299 ld~~t 303 (417)
||..+
T Consensus 236 ~dl~~ 240 (335)
T PF05567_consen 236 FDLSS 240 (335)
T ss_dssp EE--T
T ss_pred EECCC
Confidence 98854
No 27
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=97.53 E-value=0.00018 Score=44.47 Aligned_cols=30 Identities=37% Similarity=0.740 Sum_probs=25.4
Q ss_pred EEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 126 VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 126 v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
..++.||++.. ++.|+|+|.++|+++|+++
T Consensus 4 ~~~~~v~~~~~--------------~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 4 LSDGTVYVGST--------------DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EECCEEEEEcC--------------CCEEEEEEcccCcEEEEcC
Confidence 44668999876 5999999999999999863
No 28
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=97.43 E-value=0.018 Score=55.25 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=41.4
Q ss_pred CCCCeEEEEECCCCceEEEecCC-CCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEE
Q 039692 219 IYANSIVALDIDSGRIAWAKPLG-GYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAW 297 (417)
Q Consensus 219 ~~~~~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ 297 (417)
...+.++.||+++.+..+..+.. ..... ++ ....+..+. .+ +++++.=+..+++.
T Consensus 229 ~s~~~v~~ld~~~~~~~~~~~~~~~~~~~-~s-----------------~~~G~~Q~L---~n---Gn~li~~g~~g~~~ 284 (299)
T PF14269_consen 229 PSRGLVLELDPETMTVTLVREYSDHPDGF-YS-----------------PSQGSAQRL---PN---GNVLIGWGNNGRIS 284 (299)
T ss_pred CCCceEEEEECCCCEEEEEEEeecCCCcc-cc-----------------cCCCcceEC---CC---CCEEEecCCCceEE
Confidence 35678999999988777766654 21110 00 001111222 12 35555557778888
Q ss_pred EEECCCCcEEEEeec
Q 039692 298 AFDRDSGDIIWFKLA 312 (417)
Q Consensus 298 ald~~tG~~lW~~~~ 312 (417)
=++ .+|+++|+...
T Consensus 285 E~~-~~G~vv~~~~f 298 (299)
T PF14269_consen 285 EFT-PDGEVVWEAQF 298 (299)
T ss_pred EEC-CCCCEEEEEEC
Confidence 888 56999999864
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.40 E-value=0.082 Score=48.20 Aligned_cols=189 Identities=12% Similarity=0.057 Sum_probs=107.6
Q ss_pred CEEEEeccCCcEEEEECCCCccceEeeccc-ccC---Ccce-eeEEee-eeeEEEEEecCCCceeeeeecCCCCCcceee
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALIWEQNLSK-LTG---LSGT-GIVVNV-TVAVVVAVSRSNGELVWSTQIDPRPRSQITM 122 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~---~~p~-~~v~~~-~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~ 122 (417)
..+++++.++.++.+|.++++.+.++.... .+. ..+. .++..+ ..+.+..+|..+++..............+..
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 378888889999999999888877776433 111 1111 011111 2488999998888888776632211111222
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccC
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQN 202 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~ 202 (417)
.| ++.+++.... ++.|..+|.++++.+..+....... ....+.+..
T Consensus 144 ~~---~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~~~~~i-------------~~~~~~~~~----- 189 (289)
T cd00200 144 SP---DGTFVASSSQ-------------DGTIKLWDLRTGKCVATLTGHTGEV-------------NSVAFSPDG----- 189 (289)
T ss_pred cC---cCCEEEEEcC-------------CCcEEEEEccccccceeEecCcccc-------------ceEEECCCc-----
Confidence 22 2444443331 5889999999888877665321100 012222211
Q ss_pred CCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCe
Q 039692 203 NQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGR 282 (417)
Q Consensus 203 ~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~ 282 (417)
..++.+..++.+..+|.++++.+-.+...... + ..+..+..
T Consensus 190 ----------~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----------------------------i-~~~~~~~~ 230 (289)
T cd00200 190 ----------EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG----------------------------V-NSVAFSPD 230 (289)
T ss_pred ----------CEEEEecCCCcEEEEECCCCceecchhhcCCc----------------------------e-EEEEEcCC
Confidence 12334444788999998888776555322111 0 11111111
Q ss_pred eeeEEEEEcccceEEEEECCCCcEEEEee
Q 039692 283 FRDVVVAVQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 283 ~~~~v~~~~~~G~l~ald~~tG~~lW~~~ 311 (417)
+..++.++.+|.++.+|..+++.+....
T Consensus 231 -~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 231 -GYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -CcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 3456666669999999999988877665
No 30
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.33 E-value=0.14 Score=47.97 Aligned_cols=104 Identities=11% Similarity=0.205 Sum_probs=61.9
Q ss_pred EEEEe-ccCCcEEEEECCCCccceEeecccccC---Cccee--e-EEeeeeeEEEEEecCCCceeeeeecCCCCCcceee
Q 039692 50 VVYFP-SWNGYLYAVNAFNGALIWEQNLSKLTG---LSGTG--I-VVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM 122 (417)
Q Consensus 50 ~v~v~-~~~g~l~ald~~tG~~~W~~~~~~~~~---~~p~~--~-v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~ 122 (417)
.+|++ ..++.|+.+|.++|+.+-.+....... .+|.+ + +.....+.++.+|..+|+.+.+.+..... ..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEE
Confidence 34544 568999999999999877776543211 11111 1 11112378999999999887655533221 11122
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
+| .+..+|+.... ++.|..+|.++++.+.+++
T Consensus 81 ~~--~g~~l~~~~~~-------------~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 81 HP--NGKILYIANED-------------DNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred CC--CCCEEEEEcCC-------------CCeEEEEECCCCeEEeEee
Confidence 22 13346665442 5789999999888776654
No 31
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=97.00 E-value=0.15 Score=48.88 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=46.3
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCC--CCCccccC--CCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEE
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGG--YSGAAVWG--SSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVA 226 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~--~~gg~~~~--~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~a 226 (417)
++.++-+|++||+++|+......-...... .......+ ...+.|.-.. + .......+.++.....-..|+.
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~Hi----N-sV~~~~~G~yLiS~R~~~~i~~ 169 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHI----N-SVDKDDDGDYLISSRNTSTIYK 169 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEe----e-eeeecCCccEEEEecccCEEEE
Confidence 578999999999999998874322100000 00000000 0000010000 0 0011123345555566788999
Q ss_pred EECCCCceEEEecCC
Q 039692 227 LDIDSGRIAWAKPLG 241 (417)
Q Consensus 227 ld~~tG~~~W~~~~~ 241 (417)
||++||+++|+..-.
T Consensus 170 I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 170 IDPSTGKIIWRLGGK 184 (299)
T ss_pred EECCCCcEEEEeCCC
Confidence 999999999998655
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.90 E-value=0.11 Score=51.47 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=60.3
Q ss_pred cCccccccceeeeEEEeCCceeeCcEEE--CCEEEEeccCCcEEEEECCCCccceEeecccccCCcceee--EEee-e--
Q 039692 20 INPVTVRNLRLRWSFYAGKDISATPAVA--NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGI--VVNV-T-- 92 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~~~~~~p~~~--~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~--v~~~-~-- 92 (417)
|...+..+.++.-+++.+.......... +..+|+.+.+|.|..||+.+++++-+.+.+.. |.++ ..++ +
T Consensus 18 v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~----~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN----PRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE----EEEEEE--TTTEEE
T ss_pred EEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC----cceEEEcCCCCEEE
Confidence 4555667788888888877665555543 34799999999999999999999999988753 2221 1122 1
Q ss_pred -----eeEEEEEecCCCceeeeeecC
Q 039692 93 -----VAVVVAVSRSNGELVWSTQID 113 (417)
Q Consensus 93 -----v~~l~ald~~tG~~~W~~~~~ 113 (417)
-+.+..+|.+|.+++=+.++.
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCceeEeccccccceeecccc
Confidence 189999999999999888764
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.85 E-value=0.022 Score=51.41 Aligned_cols=191 Identities=13% Similarity=0.057 Sum_probs=111.0
Q ss_pred ECCEEEEeccCCcEEEEECCCCccceEeeccc-ccCC-----cceeeEEeeeeeEEEEEecCCC--ceeeeeecCCCCCc
Q 039692 47 ANGVVYFPSWNGYLYAVNAFNGALIWEQNLSK-LTGL-----SGTGIVVNVTVAVVVAVSRSNG--ELVWSTQIDPRPRS 118 (417)
Q Consensus 47 ~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~-----~p~~~v~~~~v~~l~ald~~tG--~~~W~~~~~~~~~~ 118 (417)
.+-++.-+..+..++.+|..|||++=++.... .+.+ ....++...+...+.++|-..- +++-.+. +...
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild---ea~D 146 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD---EAKD 146 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh---hhcC
Confidence 34455556678899999999999876555432 1110 0001122234577777774332 2221111 1111
Q ss_pred ceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccC
Q 039692 119 QITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRR 198 (417)
Q Consensus 119 ~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~ 198 (417)
..+.+...++.+++.+- +|.+.-+|.+.|++--.+-..|-. ...+.+
T Consensus 147 --~V~Si~v~~heIvaGS~-------------DGtvRtydiR~G~l~sDy~g~pit---------------~vs~s~--- 193 (307)
T KOG0316|consen 147 --GVSSIDVAEHEIVAGSV-------------DGTVRTYDIRKGTLSSDYFGHPIT---------------SVSFSK--- 193 (307)
T ss_pred --ceeEEEecccEEEeecc-------------CCcEEEEEeecceeehhhcCCcce---------------eEEecC---
Confidence 11223345555554442 799999999988775433221110 011111
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEe
Q 039692 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIS 278 (417)
Q Consensus 199 ~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~ 278 (417)
...+..++..++.+..||.+|||++-.+.-.....+...| | +.
T Consensus 194 ------------d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc-------~---------------l~--- 236 (307)
T KOG0316|consen 194 ------------DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC-------C---------------LN--- 236 (307)
T ss_pred ------------CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee-------e---------------ec---
Confidence 2345566778899999999999999777654443332222 1 00
Q ss_pred cCCeeeeEEEEEcccceEEEEECCCCcEEEEeecC
Q 039692 279 TNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 279 ~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~ 313 (417)
+...+++.+++||.+|..|+.+++++=+....
T Consensus 237 ---qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 237 ---QSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred ---ccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 11467888999999999999999998887753
No 34
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.85 E-value=0.024 Score=52.77 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=88.9
Q ss_pred ECCEEEEecc---CCcEEEEECCCCccceEeecccccCCcceeeEEeeee------eEEEEEecCCCceeeeeecCCCCC
Q 039692 47 ANGVVYFPSW---NGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTV------AVVVAVSRSNGELVWSTQIDPRPR 117 (417)
Q Consensus 47 ~~g~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~v------~~l~ald~~tG~~~W~~~~~~~~~ 117 (417)
.+|.+|.++. ...|+.+|.+||+++-+.+++.....-.+.+..+..+ +..+.+|++|-+++=+++.+.+.-
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW 133 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW 133 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcce
Confidence 6889998874 3579999999999999999987654333333333322 889999999999988888665432
Q ss_pred cceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeeccc
Q 039692 118 SQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIR 197 (417)
Q Consensus 118 ~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~ 197 (417)
+ +. -.+..+++... ..+|+-+|++|-+++=+.+....... + ..+.+ .
T Consensus 134 G-Lt----~dg~~Li~SDG--------------S~~L~~~dP~~f~~~~~i~V~~~g~p---------v----~~LNE-L 180 (264)
T PF05096_consen 134 G-LT----SDGKRLIMSDG--------------SSRLYFLDPETFKEVRTIQVTDNGRP---------V----SNLNE-L 180 (264)
T ss_dssp E-EE----ECSSCEEEE-S--------------SSEEEEE-TTT-SEEEEEE-EETTEE----------------EEE-E
T ss_pred E-EE----cCCCEEEEECC--------------ccceEEECCcccceEEEEEEEECCEE---------C----CCcEe-E
Confidence 2 11 23445665544 47999999998887766655321110 0 00000 0
Q ss_pred CcccCCCCCCCCCCCCcccCCCC-CCeEEEEECCCCceEEEecCC
Q 039692 198 RQKQNNQTTKPTHPDQCISSDIY-ANSIVALDIDSGRIAWAKPLG 241 (417)
Q Consensus 198 ~~~~~~~~~~p~~~~~~v~~~~~-~~~l~ald~~tG~~~W~~~~~ 241 (417)
- ..++.++++-+ ...|+.||++||+++=..+..
T Consensus 181 E-----------~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 181 E-----------YINGKIYANVWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp E-----------EETTEEEEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred E-----------EEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence 0 01233444432 468999999999998776653
No 35
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.79 E-value=0.28 Score=51.75 Aligned_cols=185 Identities=21% Similarity=0.246 Sum_probs=118.3
Q ss_pred ECCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee--eeeEEEEEecCCCceeeeeecCCCCCc------
Q 039692 47 ANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV--TVAVVVAVSRSNGELVWSTQIDPRPRS------ 118 (417)
Q Consensus 47 ~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~--~v~~l~ald~~tG~~~W~~~~~~~~~~------ 118 (417)
..+.+|++.. ..++++-. ||.+|..-...... +.-- +-..|.|+|.+..-.+|+.....+..+
T Consensus 85 ~~~~vy~A~g-~~i~~~~r--gk~i~~~~~~~~a~------v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~ 155 (910)
T KOG1539|consen 85 DKDYVYVASG-NKIYAYAR--GKHIRHTTLLHGAK------VHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFL 155 (910)
T ss_pred cCceEEEecC-cEEEEEEc--cceEEEEeccccce------EEEEeeecceEEEEEccCcEEEEEeccccccccccceee
Confidence 4566777764 57888874 88888876654311 1111 126778888887778887775211100
Q ss_pred -------ceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCc
Q 039692 119 -------QITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSP 191 (417)
Q Consensus 119 -------~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~p 191 (417)
....-|..+=++|.+|+. .|.+.-++.+||+++.+++.-+... .....+|
T Consensus 156 ~~~~~~Ital~HP~TYLNKIvvGs~--------------~G~lql~Nvrt~K~v~~f~~~~s~I---------T~ieqsP 212 (910)
T KOG1539|consen 156 KVEGDFITALLHPSTYLNKIVVGSS--------------QGRLQLWNVRTGKVVYTFQEFFSRI---------TAIEQSP 212 (910)
T ss_pred eccCCceeeEecchhheeeEEEeec--------------CCcEEEEEeccCcEEEEecccccce---------eEeccCC
Confidence 011234445677888887 4999999999999999988743221 1122345
Q ss_pred eeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCC
Q 039692 192 AIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEA 271 (417)
Q Consensus 192 a~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 271 (417)
++|- |..+..+|.++.+|.+.++++-+++-....
T Consensus 213 aLDV-------------------VaiG~~~G~ViifNlK~dkil~sFk~d~g~--------------------------- 246 (910)
T KOG1539|consen 213 ALDV-------------------VAIGLENGTVIIFNLKFDKILMSFKQDWGR--------------------------- 246 (910)
T ss_pred cceE-------------------EEEeccCceEEEEEcccCcEEEEEEccccc---------------------------
Confidence 5543 456678899999999999999998865211
Q ss_pred ceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEee
Q 039692 272 PMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 272 p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~ 311 (417)
-.-.....|| ..++..++..|.+...|++.-+++|...
T Consensus 247 VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 247 VTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred eeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 0111223344 2345556677888888888888888776
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.78 E-value=0.16 Score=49.74 Aligned_cols=120 Identities=8% Similarity=0.002 Sum_probs=72.7
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPD 173 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~ 173 (417)
+.++.||.++++++=++++...+.. + .+| .+..+|+...-.+... =.+.+..|..+|.+|++++-+.+..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~sp--Dg~~lyva~~~~~R~~----~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VAS--DGSFFAHASTVYSRIA----RGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECC--CCCEEEEEeccccccc----cCCCCCEEEEEECccCcEEeEEccCCC
Confidence 8999999999999988887655443 3 444 2556888766100000 000157999999999999999887533
Q ss_pred CCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccC-C-CCCCeEEEEECCCCceEEEecCCC
Q 039692 174 NGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISS-D-IYANSIVALDIDSGRIAWAKPLGG 242 (417)
Q Consensus 174 ~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~-~-~~~~~l~ald~~tG~~~W~~~~~~ 242 (417)
.....+.. . ...++.++ +..+|. + ..+..+..+|.++++++=+.+.+.
T Consensus 99 p~~~~~~~----~--~~~~ls~d---------------gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 99 PRFLVGTY----P--WMTSLTPD---------------NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred chhhccCc----c--ceEEECCC---------------CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 11000000 0 01122221 112332 2 336789999999999998888754
No 37
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.73 E-value=0.025 Score=58.05 Aligned_cols=164 Identities=17% Similarity=0.286 Sum_probs=76.3
Q ss_pred CCcEEEEECCCCccceEeecccccCCcceeeEEee-e----eeEEEEEecCCCceeeeeecCCCC---CcceeeceeEEc
Q 039692 57 NGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV-T----VAVVVAVSRSNGELVWSTQIDPRP---RSQITMSGSVYM 128 (417)
Q Consensus 57 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~-~----v~~l~ald~~tG~~~W~~~~~~~~---~~~~~~sp~v~~ 128 (417)
....+++|. +|.++|........... .-...++ + -..++.+|. .|+++|+++++... .-.+.--| +
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~-~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~---n 200 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNS-FKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELP---N 200 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SS-EEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-T---T
T ss_pred CceEEEECC-CccEEEEEccCccccce-eeEcCCCCEEEecCCceEEEcC-CCCEEEeeecCCcccccccccEECC---C
Confidence 678999996 89999999988643321 1112222 1 289999996 69999999987532 00111112 3
Q ss_pred Ce-EEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCC--CC----------CCCCCCccccCCCc--ee
Q 039692 129 GA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNG--GK----------RGGYSGAAVWGSSP--AI 193 (417)
Q Consensus 129 ~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~----------~~~~~gg~~~~~~p--a~ 193 (417)
|. ++++....... ......+....|+-+| .||+++|..++...-. .. .....++.-|...- .+
T Consensus 201 Gn~L~l~~~~~~~~-~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 201 GNLLILASETKYVD-EDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp S-EEEEEEETTEE--TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCEEEEEeeccccc-CCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 33 33333100000 0000111245799999 8999999988854211 00 00011233332211 12
Q ss_pred ecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCC
Q 039692 194 DVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGG 242 (417)
Q Consensus 194 d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~ 242 (417)
++. .+..+........|+.||.+||+++|......
T Consensus 279 d~~--------------dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 279 DPS--------------DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp ETT--------------TTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred eCC--------------CCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 221 12233444556799999999999999887653
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.66 E-value=0.58 Score=43.77 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=69.1
Q ss_pred cCccccccceeeeEEEeCCceeeCcEEE-C-CEEEEe-ccCCcEEEEECCCCccceEeecccccC---Cccee--e-EEe
Q 039692 20 INPVTVRNLRLRWSFYAGKDISATPAVA-N-GVVYFP-SWNGYLYAVNAFNGALIWEQNLSKLTG---LSGTG--I-VVN 90 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~~~~~~p~~~-~-g~v~v~-~~~g~l~ald~~tG~~~W~~~~~~~~~---~~p~~--~-v~~ 90 (417)
+...+..+++..-.+....... ...+. + ..+|+. ..++.|+.+|.++|+.+-+........ .+|.+ + +..
T Consensus 13 v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 91 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIAN 91 (300)
T ss_pred EEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEc
Confidence 4444555666665555443322 22232 3 356655 467899999999998876554432111 11111 0 111
Q ss_pred eeeeEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCe-EEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 91 VTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 91 ~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
...+.|+.+|.++++.+.+.+..... ..+..+| ++. ++++... ...++.+|.++++..-..
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~---dg~~l~~~~~~-------------~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPVGVEP-EGMAVSP---DGKIVVNTSET-------------TNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeCCCCc-ceEEECC---CCCEEEEEecC-------------CCeEEEEeCCCCeEEEEE
Confidence 11278999999888887766543221 1122233 444 4343321 234666788887765443
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.62 E-value=0.41 Score=44.28 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=60.6
Q ss_pred CcEEE--CCEEEEec-cCCcEEEEECCCCccceEeecccccCCcceeeEEe---e--ee---eEEEEEecCCCceeeeee
Q 039692 43 TPAVA--NGVVYFPS-WNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVN---V--TV---AVVVAVSRSNGELVWSTQ 111 (417)
Q Consensus 43 ~p~~~--~g~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~---~--~v---~~l~ald~~tG~~~W~~~ 111 (417)
.|+.. ++.+|+.+ ..+.|+.+|+++++.. ...++. |.+++.. + ++ +.+..+|.++|++.--..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-----~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-----PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-----EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-----CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEee
Confidence 56666 57888877 4788999999877652 223332 3332222 2 22 555555988887665555
Q ss_pred cC-CC-CCcceeeceeE-EcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceece
Q 039692 112 ID-PR-PRSQITMSGSV-YMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167 (417)
Q Consensus 112 ~~-~~-~~~~~~~sp~v-~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~ 167 (417)
.. .. .... ..-.++ -+|.+|++......... ...+.|+.++.. |+..-.
T Consensus 78 ~~~~~~~~~~-~ND~~vd~~G~ly~t~~~~~~~~~-----~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 78 LPDGGVPFNR-PNDVAVDPDGNLYVTDSGGGGASG-----IDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTCSCTEE-EEEEEE-TTS-EEEEEECCBCTTC-----GGSEEEEEEETT-SEEEEE
T ss_pred ccCCCcccCC-CceEEEcCCCCEEEEecCCCcccc-----ccccceEEECCC-CeEEEE
Confidence 31 11 1111 111112 26779998765322110 001789999998 765443
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.60 E-value=0.64 Score=44.71 Aligned_cols=150 Identities=9% Similarity=0.146 Sum_probs=86.5
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeecee---EEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGS---VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~---v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
+.|.+.|.+||.++-+..-... ...++. ...-.++-+.. ++.++.++..+||.+-..+-
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~----~~~~~~~~~~~~~~~~~g~~--------------e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEG----LELPCISLNLAGSTLTKGNS--------------EGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ceEEEEecCCCceeEEeccccc----CcCCccccccccceeEeccC--------------CccEEEEccccceEEEecCC
Confidence 9999999999999988773321 111111 12333444444 57888888889999877662
Q ss_pred -cCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcc-cCCCCCCeEEEEECCCCceEEEecCCCCcceee
Q 039692 171 -LPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCI-SSDIYANSIVALDIDSGRIAWAKPLGGYDIFYF 248 (417)
Q Consensus 171 -~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v-~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~ 248 (417)
.|.... .-+.. ...+.+.|.-..-.+ ..+..++.|..+|..+-+++-+.+-..
T Consensus 274 ~~~~l~~---------------~~e~~----~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~------ 328 (399)
T KOG0296|consen 274 TVPELKP---------------SQEEL----DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED------ 328 (399)
T ss_pred CCccccc---------------cchhh----hhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC------
Confidence 221110 00000 000001111000001 134567888888877666654433221
Q ss_pred eccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeec
Q 039692 249 TCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 249 ~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
+ +.++...+ ..+|+.++-+|.++.+|+.||.++..+..
T Consensus 329 -----------------------~-V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 329 -----------------------G-VTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred -----------------------c-eEEEEEcC--cchheeeccCceEEeeeccccceEEEEec
Confidence 2 23344333 46889999999999999999999999873
No 41
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.47 E-value=0.18 Score=48.65 Aligned_cols=233 Identities=21% Similarity=0.186 Sum_probs=125.5
Q ss_pred CEEEEecc-----CCcEEEEECCCCccceEeecccc--cCCccee---eE-----Eee----eeeEEEEEecCCCceeee
Q 039692 49 GVVYFPSW-----NGYLYAVNAFNGALIWEQNLSKL--TGLSGTG---IV-----VNV----TVAVVVAVSRSNGELVWS 109 (417)
Q Consensus 49 g~v~v~~~-----~g~l~ald~~tG~~~W~~~~~~~--~~~~p~~---~v-----~~~----~v~~l~ald~~tG~~~W~ 109 (417)
.+|||.+. .++++.+|+++||.+=..+.+-. +..+|-+ .+ .|+ .-..|..+|.+|=++.+.
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 46777642 46899999999999888887632 1122321 11 122 128899999999999999
Q ss_pred eecCCCCCcc----eeeceeEEcCe-EEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCc
Q 039692 110 TQIDPRPRSQ----ITMSGSVYMGA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGA 184 (417)
Q Consensus 110 ~~~~~~~~~~----~~~sp~v~~~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg 184 (417)
+.+++.+... .....+..+++ +||..- |+-..+-.+|.+.++.+=++++..
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~------------TPa~SVtVVDl~~~kvv~ei~~PG------------ 138 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSADGKFLYVQNF------------TPATSVTVVDLAAKKVVGEIDTPG------------ 138 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-TTSSEEEEEEE------------SSSEEEEEEETTTTEEEEEEEGTS------------
T ss_pred EecCCcchheecccccceEEccCCcEEEEEcc------------CCCCeEEEEECCCCceeeeecCCC------------
Confidence 9987642111 11112223444 665433 345789999999999987777621
Q ss_pred cccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC-CCceEEEecCCCCcceeeeccCCCCCCCCCCCC
Q 039692 185 AVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID-SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPN 263 (417)
Q Consensus 185 ~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~ 263 (417)
+|+.-|. .+ +. .+....+|.+.-+..+ .|++. +....-... .
T Consensus 139 -C~~iyP~-~~----------------~~-F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~---~-------------- 181 (342)
T PF06433_consen 139 -CWLIYPS-GN----------------RG-FSMLCGDGSLLTVTLDADGKEA-QKSTKVFDP---D-------------- 181 (342)
T ss_dssp -EEEEEEE-ET----------------TE-EEEEETTSCEEEEEETSTSSEE-EEEEEESST---T--------------
T ss_pred -EEEEEec-CC----------------Cc-eEEEecCCceEEEEECCCCCEe-EeeccccCC---C--------------
Confidence 2221111 00 01 1122345666555554 79998 443221110 0
Q ss_pred CCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCC--------CCCCCcceecccc--cCCeEE
Q 039692 264 LDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGP--------GGREGGGVWGAAT--DGRRVY 333 (417)
Q Consensus 264 ~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~--------~~~~g~~~~~~~~--~~~~vy 333 (417)
.| .+...|... + .++.+++.+.+|.+|.+|....+..|.....- +=..|+.. ..++ ..+++|
T Consensus 182 ~d-p~f~~~~~~-----~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q-~~A~~~~~~rly 253 (342)
T PF06433_consen 182 DD-PLFEHPAYS-----R-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQ-LIAYHAASGRLY 253 (342)
T ss_dssp TS--B-S--EEE-----T-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS--EEEETTTTEEE
T ss_pred Cc-ccccccceE-----C-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCccee-eeeeccccCeEE
Confidence 00 011233332 1 13467779999999999988776654433210 00001111 1233 467888
Q ss_pred EEeccC--------CceeeeecCCC
Q 039692 334 TNIVNN--------DRIIWSTADPS 350 (417)
Q Consensus 334 ~~~~~~--------~~~~W~~~~~~ 350 (417)
+.=.++ ++.+|.++...
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTT
T ss_pred EEecCCCCCCccCCceEEEEEECCC
Confidence 864322 27888887643
No 42
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.44 E-value=0.047 Score=56.07 Aligned_cols=179 Identities=15% Similarity=0.220 Sum_probs=77.7
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPD 173 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~ 173 (417)
...+++| .+|.++|..+........+ -.+.+|.++++.. ..++.+|.. |+++|++.+...
T Consensus 128 ~~~~~iD-~~G~Vrw~~~~~~~~~~~~---~~l~nG~ll~~~~---------------~~~~e~D~~-G~v~~~~~l~~~ 187 (477)
T PF05935_consen 128 SYTYLID-NNGDVRWYLPLDSGSDNSF---KQLPNGNLLIGSG---------------NRLYEIDLL-GKVIWEYDLPGG 187 (477)
T ss_dssp EEEEEEE-TTS-EEEEE-GGGT--SSE---EE-TTS-EEEEEB---------------TEEEEE-TT---EEEEEE--TT
T ss_pred ceEEEEC-CCccEEEEEccCcccccee---eEcCCCCEEEecC---------------CceEEEcCC-CCEEEeeecCCc
Confidence 8899999 6799999999654321111 1234788888775 689999996 999999888431
Q ss_pred CCCCCCCCCCccccCCCceeecccCccc-CC--CCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCc-ceeee
Q 039692 174 NGGKRGGYSGAAVWGSSPAIDVIRRQKQ-NN--QTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYD-IFYFT 249 (417)
Q Consensus 174 ~~~~~~~~~gg~~~~~~pa~d~~~~~~~-~~--~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~-~~~~~ 249 (417)
.. .........++.+... .. ..... ..........|+-+| .+|+++|..+....- ..+..
T Consensus 188 ~~----------~~HHD~~~l~nGn~L~l~~~~~~~~~-----~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 188 YY----------DFHHDIDELPNGNLLILASETKYVDE-----DKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp EE-----------B-S-EEE-TTS-EEEEEEETTEE-T-----S-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--T
T ss_pred cc----------ccccccEECCCCCEEEEEeecccccC-----CCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccc
Confidence 10 0000011111111000 00 00000 001123356799999 999999998765431 00000
Q ss_pred ccCCCCCCCCC-CCCCCCccCCCceEEEEecCCeeeeEEEEEccc-ceEEEEECCCCcEEEEeecC
Q 039692 250 CLVPNNPDCPP-GPNLDADFGEAPMLLTISTNGRFRDVVVAVQKS-GFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 250 ~~~~~~~~c~~-~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~-G~l~ald~~tG~~lW~~~~~ 313 (417)
. .+..+.... ......|.. -+..+..+.+ ++.|++..+. ..++.||..||+++|.....
T Consensus 252 ~-~~~~~~~~~~~~~~~~DW~---H~Nsi~yd~~-dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 252 V-LKPYPYGDISGSGGGRDWL---HINSIDYDPS-DDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp T-GGT--SSSSS-SSTTSBS-----EEEEEEETT-TTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred c-cccccccccccCCCCCCcc---ccCccEEeCC-CCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 0 000000000 000111110 1111111222 3556666665 48999999999999998753
No 43
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.33 E-value=0.15 Score=55.40 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=36.5
Q ss_pred CeEEEEeccCCceeeeecCCCCCCCccceeeeCCeEEecc-CCCCCCeeccccccc---CCeE-EEecCeee
Q 039692 330 RRVYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGS-VSANGSTVYGGVPAS---YGCI-YLGNGYTV 396 (417)
Q Consensus 330 ~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~-~~g~g~~~~~sp~~~---~g~l-yv~~~~~~ 396 (417)
+.+|+.|..+. +|+++..+.... +-.++.--+|+++ ..|....++..|.+. ++++ ++|+|.-.
T Consensus 773 d~aYAGDl~Gn--lWRFdLsg~~~n--~W~va~~plf~at~~qg~~qpit~Ap~i~~~~g~~~v~fGTG~~l 840 (1036)
T COG3419 773 DYAYAGDLGGN--LWRFDLSGNAPN--SWTVASLPLFVATASQGRAQPITVAPSIVPTTGGYVVIFGTGRYL 840 (1036)
T ss_pred EEEEeeccCCc--EEEEEecCCCCC--CcceeccceeeeecCcCcccceeeccccccCCCceEEEEecCccc
Confidence 35777777665 999998643222 3333434456665 344456677777754 5544 56776443
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.31 E-value=0.42 Score=47.38 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=66.0
Q ss_pred CEEEEec-cCCcEEEEECCCCccceEeecccccC----Cccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCCccee
Q 039692 49 GVVYFPS-WNGYLYAVNAFNGALIWEQNLSKLTG----LSGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQIT 121 (417)
Q Consensus 49 g~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~----~~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~ 121 (417)
+.+|+.. .++.|..||.+|.+++-+++.+.... .+|-+ ++.-...+.|..+|+.+++++-+.++...+.+ +.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~-i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG-IA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE-EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce-EE
Confidence 4555554 57999999999999999998864321 12211 01111128999999999999999997653321 22
Q ss_pred eceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeec
Q 039692 122 MSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYML 171 (417)
Q Consensus 122 ~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~ 171 (417)
.++ .+..+|++... .+.+..+|.+|.+++=+.+..
T Consensus 85 ~s~--DG~~~~v~n~~-------------~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 85 VSP--DGKYVYVANYE-------------PGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp E----TTTEEEEEEEE-------------TTEEEEEETTT--EEEEEE--
T ss_pred EcC--CCCEEEEEecC-------------CCceeEeccccccceeecccc
Confidence 232 23347776643 579999999999999887763
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.92 E-value=1.7 Score=41.83 Aligned_cols=261 Identities=10% Similarity=0.055 Sum_probs=128.9
Q ss_pred ECCEEEE-eccCCcEEEEECCCCccceEeec--ccc--cCCccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCCcc
Q 039692 47 ANGVVYF-PSWNGYLYAVNAFNGALIWEQNL--SKL--TGLSGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQ 119 (417)
Q Consensus 47 ~~g~v~v-~~~~g~l~ald~~tG~~~W~~~~--~~~--~~~~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~ 119 (417)
.++.+.+ +..+|.|..+...+|+..|+..- ... ....|.+ +......|.++++...++...=.+.- ....
T Consensus 116 hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G---h~~~ 192 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG---HNSP 192 (399)
T ss_pred cCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC---CCCC
Confidence 3554443 34689999999999999999862 211 1122321 11222335555555544333222221 1111
Q ss_pred eeeceeE-EcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccC
Q 039692 120 ITMSGSV-YMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRR 198 (417)
Q Consensus 120 ~~~sp~v-~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~ 198 (417)
..+.-.+ .+.+++.+.. +|.|...|++||.++-+........ . |-++...
T Consensus 193 ct~G~f~pdGKr~~tgy~--------------dgti~~Wn~ktg~p~~~~~~~e~~~-~-------------~~~~~~~- 243 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYD--------------DGTIIVWNPKTGQPLHKITQAEGLE-L-------------PCISLNL- 243 (399)
T ss_pred cccccccCCCceEEEEec--------------CceEEEEecCCCceeEEecccccCc-C-------------Ccccccc-
Confidence 2221112 2556777766 6999999999999998766432111 0 0000000
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecC-CCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEE
Q 039692 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPL-GGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTI 277 (417)
Q Consensus 199 ~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~ 277 (417)
....+..+...+.++.++..+||++--... .+.-. +.....+..+.+.|.-.++
T Consensus 244 ------------~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~-------------~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 244 ------------AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK-------------PSQEELDESVESIPSSSKL 298 (399)
T ss_pred ------------ccceeEeccCCccEEEEccccceEEEecCCCCcccc-------------ccchhhhhhhhhccccccc
Confidence 001123445567788888888988876552 11100 0000001111122222211
Q ss_pred ecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCC----CCCcceecccccCCeEEEEeccCCceeeeecCCCCCC
Q 039692 278 STNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGG----REGGGVWGAATDGRRVYTNIVNNDRIIWSTADPSNET 353 (417)
Q Consensus 278 ~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~----~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~ 353 (417)
.+..++.-+|+|...|...-+++-+.....+. ..+......+..++.|+..|...++.+-.+.-....+
T Consensus 299 -------pL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~I 371 (399)
T KOG0296|consen 299 -------PLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGI 371 (399)
T ss_pred -------chhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchhe
Confidence 23344667899999998877776665543110 0110111223456777777777777766664322222
Q ss_pred CccceeeeCCeEEeccCC
Q 039692 354 AHGPVTVVNGVLFAGSVS 371 (417)
Q Consensus 354 ~~~p~~~~~~~v~~~~~~ 371 (417)
+--.+....++|..++.+
T Consensus 372 l~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 372 LDFALSPQKRLVVTVSDD 389 (399)
T ss_pred eEEEEcCCCcEEEEecCC
Confidence 222222334555555443
No 46
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=95.72 E-value=0.071 Score=52.03 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=16.7
Q ss_pred eeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEE-----eCCCCceeceeee
Q 039692 120 ITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKL-----DVRNGRIIWQTYM 170 (417)
Q Consensus 120 ~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~al-----d~~tG~~~W~~~~ 170 (417)
+.++|++++..+++|.. +|.|++| |.++|+++|.+--
T Consensus 5 i~S~P~~vg~~~~vGAN--------------DGmLHaF~~~~~d~~~g~E~~a~iP 46 (335)
T PF05567_consen 5 INSSPVYVGAYLAVGAN--------------DGMLHAFNANDGDGRTGEEKFAFIP 46 (335)
T ss_dssp ------EE-SHHHEE-S--------------TT-EEEE---ESSS----EEEEE--
T ss_pred cCCcceEECCeeEEEcc--------------CceEEEEEecCCCCccccceEEEcC
Confidence 55678777775567766 7999999 3445788998653
No 47
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.70 E-value=0.68 Score=43.23 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=89.7
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPD 173 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~ 173 (417)
..|..+|.+||+++.+.+++... +.-.-++.++++|.-+.. ++..+.+|++|-+++=+++...+
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~---FgEGit~~~d~l~qLTWk-------------~~~~f~yd~~tl~~~~~~~y~~E 131 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRY---FGEGITILGDKLYQLTWK-------------EGTGFVYDPNTLKKIGTFPYPGE 131 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT-----EEEEEEETTEEEEEESS-------------SSEEEEEETTTTEEEEEEE-SSS
T ss_pred EEEEEEECCCCcEEEEEECCccc---cceeEEEECCEEEEEEec-------------CCeEEEEccccceEEEEEecCCc
Confidence 78999999999999999987643 344456789999988875 78999999999999877766321
Q ss_pred CCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCC
Q 039692 174 NGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVP 253 (417)
Q Consensus 174 ~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~ 253 (417)
-|+ .+.|.. .++.......|+-+|+++-+++=+.+......
T Consensus 132 ------------GWG--Lt~dg~-----------------~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~-------- 172 (264)
T PF05096_consen 132 ------------GWG--LTSDGK-----------------RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR-------- 172 (264)
T ss_dssp --------------E--EEECSS-----------------CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE--------
T ss_pred ------------ceE--EEcCCC-----------------EEEEECCccceEEECCcccceEEEEEEEECCE--------
Confidence 232 233322 23344456789999999988876665542210
Q ss_pred CCCCCCCCCCCCCccCCCceEEEEe-cCCeeeeEEEEEc-ccceEEEEECCCCcEEEEeec
Q 039692 254 NNPDCPPGPNLDADFGEAPMLLTIS-TNGRFRDVVVAVQ-KSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 254 ~~~~c~~~~~~~~~~~~~p~v~~~~-~~G~~~~~v~~~~-~~G~l~ald~~tG~~lW~~~~ 312 (417)
.-..+..++ ++ +.||+-- ....+..+|++||+++=..+.
T Consensus 173 ----------------pv~~LNELE~i~----G~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 173 ----------------PVSNLNELEYIN----GKIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp ----------------E---EEEEEEET----TEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred ----------------ECCCcEeEEEEc----CEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 011222222 23 3466542 245899999999999877765
No 48
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.62 E-value=3.9 Score=43.61 Aligned_cols=228 Identities=12% Similarity=0.076 Sum_probs=128.3
Q ss_pred EECCEEEEeccC-CcEEEEECCCCccceEe-ecccccCCcceeeEEeee-----eeEEEEEecCCCceeeeeecCCCCCc
Q 039692 46 VANGVVYFPSWN-GYLYAVNAFNGALIWEQ-NLSKLTGLSGTGIVVNVT-----VAVVVAVSRSNGELVWSTQIDPRPRS 118 (417)
Q Consensus 46 ~~~g~v~v~~~~-g~l~ald~~tG~~~W~~-~~~~~~~~~p~~~v~~~~-----v~~l~ald~~tG~~~W~~~~~~~~~~ 118 (417)
..+..+|+++.- ..+..+|.+.=.++.-- +++..+. |....+.+ ...++++.+ |+.+|..-.....
T Consensus 43 ~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~---alas~~~~vy~A~g~~i~~~~r--gk~i~~~~~~~~a-- 115 (910)
T KOG1539|consen 43 ALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKIT---ALASDKDYVYVASGNKIYAYAR--GKHIRHTTLLHGA-- 115 (910)
T ss_pred ecCceEEEEEecCceEEEEeccceEEEEecCCCCCceE---EEEecCceEEEecCcEEEEEEc--cceEEEEeccccc--
Confidence 346677777653 44667776654444333 2222222 11111222 288888875 8888877644320
Q ss_pred ceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccC
Q 039692 119 QITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRR 198 (417)
Q Consensus 119 ~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~ 198 (417)
-.+-.+.+| ..+.|+|.+..-.+|.+......... ...+.+..+
T Consensus 116 -------~v~~l~~fG-----------------e~lia~d~~~~l~vw~~s~~~~e~~l------------~~~~~~~~~ 159 (910)
T KOG1539|consen 116 -------KVHLLLPFG-----------------EHLIAVDISNILFVWKTSSIQEELYL------------QSTFLKVEG 159 (910)
T ss_pred -------eEEEEeeec-----------------ceEEEEEccCcEEEEEeccccccccc------------cceeeeccC
Confidence 011122222 36888888877788887663111000 001111111
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEe
Q 039692 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIS 278 (417)
Q Consensus 199 ~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~ 278 (417)
.... .-..|..+-..+..++..|.|..+|.+|||++..++.-... +++ +..+|++.
T Consensus 160 ~~It-al~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~---IT~-----------------ieqsPaLD--- 215 (910)
T KOG1539|consen 160 DFIT-ALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSR---ITA-----------------IEQSPALD--- 215 (910)
T ss_pred Ccee-eEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccc---eeE-----------------eccCCcce---
Confidence 0000 00123333344556778899999999999999998865422 111 23567764
Q ss_pred cCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCCC-------CCcceecccccCCeEEEEeccCCceeeeec
Q 039692 279 TNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGR-------EGGGVWGAATDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 279 ~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~-------~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~ 347 (417)
+|.++..+|+++.++.+.+|++-+++.+-+.. .|......+...|.+.+-|.+..+..|...
T Consensus 216 -------VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 216 -------VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred -------EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 78889999999999999999999988752111 122222222334567777777777777665
No 49
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.16 E-value=0.89 Score=42.81 Aligned_cols=95 Identities=15% Similarity=0.253 Sum_probs=60.7
Q ss_pred ccCCcEEEEECCCCc--cceEeecccccCCcce--eeEEee-------------eeeEEEEEecCCCceeeeeecCCCCC
Q 039692 55 SWNGYLYAVNAFNGA--LIWEQNLSKLTGLSGT--GIVVNV-------------TVAVVVAVSRSNGELVWSTQIDPRPR 117 (417)
Q Consensus 55 ~~~g~l~ald~~tG~--~~W~~~~~~~~~~~p~--~~v~~~-------------~v~~l~ald~~tG~~~W~~~~~~~~~ 117 (417)
+....|+.+|.++++ ++|+.+.......+.- .++.+. .-=-||.+|+++|+..|-.+.+..
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~-- 152 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL-- 152 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc--
Confidence 335689999999987 5899888754322211 112211 125689999999999887664321
Q ss_pred cceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCcee
Q 039692 118 SQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 118 ~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~ 165 (417)
-..+..|..+++..+-..+ -..|+|+|..+|+.+
T Consensus 153 -----KG~~~~D~a~F~i~~~~~g---------~~~i~~~Dli~~~~~ 186 (339)
T PF09910_consen 153 -----KGTLVHDYACFGINNFHKG---------VSGIHCLDLISGKWV 186 (339)
T ss_pred -----CceEeeeeEEEeccccccC---------CceEEEEEccCCeEE
Confidence 2235566667666432222 358999999988863
No 50
>PTZ00421 coronin; Provisional
Probab=94.71 E-value=6.1 Score=40.81 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=57.5
Q ss_pred CEEEEeccCCcEEEEECCCCccc-------eEeeccc-c---cCCccee---eEEeeeeeEEEEEecCCCceeeeeecCC
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALI-------WEQNLSK-L---TGLSGTG---IVVNVTVAVVVAVSRSNGELVWSTQIDP 114 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~-------W~~~~~~-~---~~~~p~~---~v~~~~v~~l~ald~~tG~~~W~~~~~~ 114 (417)
..|+.++.|+.|..+|..++... -.+.... . +..+|.+ ++..+..+.+...|..+|+.+-.+....
T Consensus 89 ~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 89 QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 35667777888888887665321 1111110 0 1112211 1222244888899998887765444221
Q ss_pred CCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 115 RPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 115 ~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.....+..+| ++.+++..+. ++.|..+|+++|+.+.+...
T Consensus 169 ~~V~sla~sp---dG~lLatgs~-------------Dg~IrIwD~rsg~~v~tl~~ 208 (493)
T PTZ00421 169 DQITSLEWNL---DGSLLCTTSK-------------DKKLNIIDPRDGTIVSSVEA 208 (493)
T ss_pred CceEEEEEEC---CCCEEEEecC-------------CCEEEEEECCCCcEEEEEec
Confidence 1111122233 4554443332 68999999999998766543
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.62 E-value=0.78 Score=43.43 Aligned_cols=233 Identities=14% Similarity=0.152 Sum_probs=125.7
Q ss_pred CccccCCcccCccccccceeeeEEEeCCc-----ee--eCcEEECCEEEEe--ccCCcEEEEECCCCcc-ceEeecccc-
Q 039692 11 RRYAYGEVLINPVTVRNLRLRWSFYAGKD-----IS--ATPAVANGVVYFP--SWNGYLYAVNAFNGAL-IWEQNLSKL- 79 (417)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~W~~~~~~~-----~~--~~p~~~~g~v~v~--~~~g~l~ald~~tG~~-~W~~~~~~~- 79 (417)
.+|||+.+.+.......--+.|.+..+.- .. -+-...++.|... +.+..+.|--+.+||+ +|+...+.-
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 46888887666655454566899887651 11 1122333433322 3455566666677775 688877731
Q ss_pred --cC-Ccceee----EEe--------eeeeEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCcccc
Q 039692 80 --TG-LSGTGI----VVN--------VTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPA 144 (417)
Q Consensus 80 --~~-~~p~~~----v~~--------~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~ 144 (417)
+. +..-|+ ..+ .+...+..--.++||.+=.+.-. . +++.-+-...+|.-++..+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH--s-Syvn~a~ft~dG~~iisaSs------- 368 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH--S-SYVNEATFTDDGHHIISASS------- 368 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc--c-ccccceEEcCCCCeEEEecC-------
Confidence 11 101011 111 12244555556789888665521 1 11221111224443333332
Q ss_pred CcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeE
Q 039692 145 DQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSI 224 (417)
Q Consensus 145 ~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l 224 (417)
+|.+-..+.+|++-+=++...+...... +..+- |-.. ....++.-.+.+
T Consensus 369 ------DgtvkvW~~KtteC~~Tfk~~~~d~~vn-----------sv~~~-------------PKnp-eh~iVCNrsntv 417 (508)
T KOG0275|consen 369 ------DGTVKVWHGKTTECLSTFKPLGTDYPVN-----------SVILL-------------PKNP-EHFIVCNRSNTV 417 (508)
T ss_pred ------CccEEEecCcchhhhhhccCCCCcccce-----------eEEEc-------------CCCC-ceEEEEcCCCeE
Confidence 6888888888888777766543222100 00000 1011 112234456788
Q ss_pred EEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCC
Q 039692 225 VALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSG 304 (417)
Q Consensus 225 ~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG 304 (417)
|.++. .|+++-++..+..+.=. +. ...+ ... ++-+|+.++|+.+|||...+|
T Consensus 418 ~imn~-qGQvVrsfsSGkREgGd--------------------Fi-~~~l---Spk---GewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 418 YIMNM-QGQVVRSFSSGKREGGD--------------------FI-NAIL---SPK---GEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred EEEec-cceEEeeeccCCccCCc--------------------eE-EEEe---cCC---CcEEEEEccCcEEEEEEeecC
Confidence 99996 59998888876544211 11 1111 222 578999999999999999999
Q ss_pred cEEEEeec
Q 039692 305 DIIWFKLA 312 (417)
Q Consensus 305 ~~lW~~~~ 312 (417)
++.-....
T Consensus 470 ~LE~tl~V 477 (508)
T KOG0275|consen 470 KLERTLPV 477 (508)
T ss_pred ceeeeeec
Confidence 88765554
No 52
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.62 E-value=4.2 Score=39.42 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=122.6
Q ss_pred cCccccccceeeeEEEeCCc--eeeCc-----EE-ECC-EEEEec--cCCcEEEEECCCCccceEeecccccCCcceeeE
Q 039692 20 INPVTVRNLRLRWSFYAGKD--ISATP-----AV-ANG-VVYFPS--WNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIV 88 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~~--~~~~p-----~~-~~g-~v~v~~--~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v 88 (417)
|...+..++++.+...++.+ ....+ .+ .+| .+||.+ ....|-.+|++.+|.+=+.++++=...-|. -
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~--~ 146 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS--G 146 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE--E
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec--C
Confidence 56677889999999999874 21111 22 233 566664 457899999999999888888752211122 1
Q ss_pred Eeee-----eeEEEEEec-CCCceeeeee---cCCCCCcceeeceeEE--cCeEEEEeCCccCccccCcccCCCceEEEE
Q 039692 89 VNVT-----VAVVVAVSR-SNGELVWSTQ---IDPRPRSQITMSGSVY--MGAFYVGLSSLEEALPADQCCTFRGSLAKL 157 (417)
Q Consensus 89 ~~~~-----v~~l~ald~-~tG~~~W~~~---~~~~~~~~~~~sp~v~--~~~v~v~~~~~~~~~~~~~~~~~~g~l~al 157 (417)
.+++ .|.|.-+.+ ++|++. +.. +..+. .++...|... ++..|+.+- +|.||.+
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~Sy--------------~G~v~~~ 210 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDD-DPLFEHPAYSRDGGRLYFVSY--------------EGNVYSA 210 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTT-S-B-S--EEETTTTEEEEEBT--------------TSEEEEE
T ss_pred CCceEEEecCCceEEEEECCCCCEe-EeeccccCCCC-cccccccceECCCCeEEEEec--------------CCEEEEE
Confidence 2232 166655555 379987 433 22221 2233444432 356666443 6999999
Q ss_pred eCCCCceeceeeecCC------CCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCccc-CCCCCCeEEEEECC
Q 039692 158 DVRNGRIIWQTYMLPD------NGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCIS-SDIYANSIVALDID 230 (417)
Q Consensus 158 d~~tG~~~W~~~~~~~------~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~-~~~~~~~l~ald~~ 230 (417)
|....+..|..+..-. ....||. |. ..|+....+..+. ++..+... ......+|.++|.+
T Consensus 211 dlsg~~~~~~~~~~~~t~~e~~~~WrPGG------~Q-~~A~~~~~~rlyv------LMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 211 DLSGDSAKFGKPWSLLTDAEKADGWRPGG------WQ-LIAYHAASGRLYV------LMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EETTSSEEEEEEEESS-HHHHHTTEEE-S------SS--EEEETTTTEEEE------EEEE--TT-TTS-EEEEEEEETT
T ss_pred eccCCcccccCcccccCccccccCcCCcc------ee-eeeeccccCeEEE------EecCCCCCCccCCceEEEEEECC
Confidence 9976665555443210 0111111 11 2355544432110 00000000 11234579999999
Q ss_pred CCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEE-cccceEEEEECCCCcEEEE
Q 039692 231 SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAV-QKSGFAWAFDRDSGDIIWF 309 (417)
Q Consensus 231 tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~-~~~G~l~ald~~tG~~lW~ 309 (417)
|+|.+-+.+..... + + ..++.+. .-+||.. ..++.|+.+|+.|||++-+
T Consensus 278 t~krv~Ri~l~~~~-~------------------------S---i~Vsqd~--~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 278 THKRVARIPLEHPI-D------------------------S---IAVSQDD--KPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TTEEEEEEEEEEEE-S------------------------E---EEEESSS--S-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCeEEEEEeCCCcc-c------------------------e---EEEccCC--CcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 99998887764221 0 0 1122222 3466654 4578999999999999988
Q ss_pred eec
Q 039692 310 KLA 312 (417)
Q Consensus 310 ~~~ 312 (417)
.+.
T Consensus 328 ~~~ 330 (342)
T PF06433_consen 328 IEQ 330 (342)
T ss_dssp E--
T ss_pred hhc
Confidence 774
No 53
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.57 E-value=3.3 Score=41.17 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=44.3
Q ss_pred CCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEc
Q 039692 212 DQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQ 291 (417)
Q Consensus 212 ~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~ 291 (417)
+.+++..+.+..+-+.|...|.++=++..+..- ..+..|. .+.++|+++
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si--------------------------~av~lDp-----ae~~~yiGt 236 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITFPSSI--------------------------KAVALDP-----AERVVYIGT 236 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEecCCcc--------------------------eeEEEcc-----cccEEEecC
Confidence 456777788889999999999998877765431 1122221 267899999
Q ss_pred ccceEEEEECCC
Q 039692 292 KSGFAWAFDRDS 303 (417)
Q Consensus 292 ~~G~l~ald~~t 303 (417)
.+|.++.++..+
T Consensus 237 ~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 237 EEGKIFQNLLFK 248 (476)
T ss_pred CcceEEeeehhc
Confidence 999999888754
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.33 E-value=1.5 Score=40.26 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=92.7
Q ss_pred EECCEEEEe-ccCCcEEEEECCCCccceEeecccccCCcceeeEEee-ee-----eEEEEEecCCCceeeeeecCCCCCc
Q 039692 46 VANGVVYFP-SWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV-TV-----AVVVAVSRSNGELVWSTQIDPRPRS 118 (417)
Q Consensus 46 ~~~g~v~v~-~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~-~v-----~~l~ald~~tG~~~W~~~~~~~~~~ 118 (417)
..++..++. +.++.|+-.|.+||++.=+..+.....+.- +..++ ++ +.+.-+|+++=+++=.++++..
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlE--vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n--- 226 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLE--VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN--- 226 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecCCCCccee--eccCCCEEEEecCceeEEeccccccceeeccCccc---
Confidence 346666665 567889999999999887777765443222 13333 11 7788889988888888886643
Q ss_pred ceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccC
Q 039692 119 QITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRR 198 (417)
Q Consensus 119 ~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~ 198 (417)
+.++-+-=+..+||...+ +..+|.+|-.||+++=.+.-.. + .|....
T Consensus 227 -V~SASL~P~k~~fVaGge-------------d~~~~kfDy~TgeEi~~~nkgh-----~-----------gpVhcV--- 273 (334)
T KOG0278|consen 227 -VESASLHPKKEFFVAGGE-------------DFKVYKFDYNTGEEIGSYNKGH-----F-----------GPVHCV--- 273 (334)
T ss_pred -cccccccCCCceEEecCc-------------ceEEEEEeccCCceeeecccCC-----C-----------CceEEE---
Confidence 222222114567776554 7999999999999987652210 0 111110
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCce-EEEecCCCCc
Q 039692 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRI-AWAKPLGGYD 244 (417)
Q Consensus 199 ~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~-~W~~~~~~~~ 244 (417)
--+.+|.+||.-.++|++ +|+.......
T Consensus 274 ------------------rFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 274 ------------------RFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ------------------EECCCCceeeccCCCceEEEEEecCCCch
Confidence 113578999999999985 8988776543
No 55
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.34 Score=43.30 Aligned_cols=157 Identities=12% Similarity=0.037 Sum_probs=91.2
Q ss_pred eeCcEEECCEEEEecc---CCcEEEEECCCCccceEeeccc-ccCCcceeeEEeeee------eEEEEEecCCCceeeee
Q 039692 41 SATPAVANGVVYFPSW---NGYLYAVNAFNGALIWEQNLSK-LTGLSGTGIVVNVTV------AVVVAVSRSNGELVWST 110 (417)
Q Consensus 41 ~~~p~~~~g~v~v~~~---~g~l~ald~~tG~~~W~~~~~~-~~~~~p~~~v~~~~v------~~l~ald~~tG~~~W~~ 110 (417)
.-...+.+|.+|.++. ..+++..|+++|+++|+.++.. .+.........+.+. +.-+.+|+.|=+++=++
T Consensus 48 TQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 48 TQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred hcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence 3344567888888863 5689999999999999999983 222111111111111 66777788777777666
Q ss_pred ecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCC
Q 039692 111 QIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSS 190 (417)
Q Consensus 111 ~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~ 190 (417)
+..++..+ -+..+..++.+.. ...|+-.|++|=+++=+.+....+.
T Consensus 128 ~y~GeGWg-----Lt~d~~~LimsdG--------------satL~frdP~tfa~~~~v~VT~~g~--------------- 173 (262)
T COG3823 128 SYEGEGWG-----LTSDDKNLIMSDG--------------SATLQFRDPKTFAELDTVQVTDDGV--------------- 173 (262)
T ss_pred ccCCccee-----eecCCcceEeeCC--------------ceEEEecCHHHhhhcceEEEEECCe---------------
Confidence 65544221 1223455665544 3689999998776666655532111
Q ss_pred ceeecccCcccCCCCCCCCCCCCcccCCCC-CCeEEEEECCCCceEEEecCC
Q 039692 191 PAIDVIRRQKQNNQTTKPTHPDQCISSDIY-ANSIVALDIDSGRIAWAKPLG 241 (417)
Q Consensus 191 pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~-~~~l~ald~~tG~~~W~~~~~ 241 (417)
|.-.-+-. --.++.+|++-+ ...+.-||++||+++--.+..
T Consensus 174 pv~~LNEL----------E~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 174 PVSKLNEL----------EWVDGELYANVWQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred ecccccce----------eeeccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence 00000000 002334555443 457899999999986555543
No 56
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.16 E-value=2.9 Score=43.42 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=120.6
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeeccccc----CCccee-eEEee-eeeEEEEEecCCCceeeeeecCCCCCc--c
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLT----GLSGTG-IVVNV-TVAVVVAVSRSNGELVWSTQIDPRPRS--Q 119 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~p~~-~v~~~-~v~~l~ald~~tG~~~W~~~~~~~~~~--~ 119 (417)
++++|-.+.+|.|.-+|+.+++++-+.+..+.. ...|.. ...-+ -.|.|+-|+...+++..+..+.-...- .
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 779998888999999999888887776654321 111210 01111 127888888888999888776543211 1
Q ss_pred eeeceeEEcCe-EEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccC
Q 039692 120 ITMSGSVYMGA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRR 198 (417)
Q Consensus 120 ~~~sp~v~~~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~ 198 (417)
+...| .+. ++.|+. ||.|.+.|.++|..+-...+.-...+. -..-.+|. -.+
T Consensus 160 lsw~~---~~~~i~~Gs~--------------Dg~Iriwd~~~~~t~~~~~~~~d~l~k---~~~~iVWS--v~~----- 212 (691)
T KOG2048|consen 160 LSWNP---TGTKIAGGSI--------------DGVIRIWDVKSGQTLHIITMQLDRLSK---REPTIVWS--VLF----- 212 (691)
T ss_pred EEecC---CccEEEeccc--------------CceEEEEEcCCCceEEEeeeccccccc---CCceEEEE--EEE-----
Confidence 22233 343 666665 688999999999988755553211110 00112231 111
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEe
Q 039692 199 QKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIS 278 (417)
Q Consensus 199 ~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~ 278 (417)
..+..+..+...|.+.-.|..+|+++=++.....+... -.+.+
T Consensus 213 -----------Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~------------------------Lav~~-- 255 (691)
T KOG2048|consen 213 -----------LRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA------------------------LAVAD-- 255 (691)
T ss_pred -----------eecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeE------------------------EEEcC--
Confidence 12344555666788888888888887666554443211 11111
Q ss_pred cCCeeeeEEEEEcccceEEEEECCCCcEEEEeec
Q 039692 279 TNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 279 ~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
.++.++.++-|+++.-+...+++..|....
T Consensus 256 ----~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~ 285 (691)
T KOG2048|consen 256 ----NEDRVFSAGVDPKIIQYSLTTNKSEWVINS 285 (691)
T ss_pred ----CCCeEEEccCCCceEEEEecCCccceeeec
Confidence 147899999999999999988877798765
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.79 E-value=1.8 Score=39.72 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=84.7
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPD 173 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~ 173 (417)
+.+...|..||++.-+.+++.. +.+.-+.-++++++-..+ +.|.-+|+++=+++=.+++ |.
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~----VtSlEvs~dG~ilTia~g--------------ssV~Fwdaksf~~lKs~k~-P~ 225 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSP----VTSLEVSQDGRILTIAYG--------------SSVKFWDAKSFGLLKSYKM-PC 225 (334)
T ss_pred CceEEEEeccCcEEEEEecCCC----CcceeeccCCCEEEEecC--------------ceeEEeccccccceeeccC-cc
Confidence 6777778888888777776543 333334457777766653 6888899988777766666 22
Q ss_pred CCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCC
Q 039692 174 NGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVP 253 (417)
Q Consensus 174 ~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~ 253 (417)
... +..+.|+. .....+..+..++-+|..||+++=.+..+.
T Consensus 226 nV~-------------SASL~P~k---------------~~fVaGged~~~~kfDy~TgeEi~~~nkgh----------- 266 (334)
T KOG0278|consen 226 NVE-------------SASLHPKK---------------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGH----------- 266 (334)
T ss_pred ccc-------------cccccCCC---------------ceEEecCcceEEEEEeccCCceeeecccCC-----------
Confidence 111 12233332 223345667899999999999987653222
Q ss_pred CCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcE-EEEeecC
Q 039692 254 NNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDI-IWFKLAG 313 (417)
Q Consensus 254 ~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~-lW~~~~~ 313 (417)
.+|+.. +-.+.+|.+||.-.++|.+ +|+...+
T Consensus 267 ----------------~gpVhc------------VrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 267 ----------------FGPVHC------------VRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ----------------CCceEE------------EEECCCCceeeccCCCceEEEEEecCC
Confidence 245543 1235677788887788864 6888754
No 58
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=1.3 Score=47.10 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=60.5
Q ss_pred ceeeeEEEeCCceeeCcEEE---CCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEeeee----eEEEEEe
Q 039692 28 LRLRWSFYAGKDISATPAVA---NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTV----AVVVAVS 100 (417)
Q Consensus 28 ~~~~W~~~~~~~~~~~p~~~---~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~v----~~l~ald 100 (417)
++.-|+...-+.....-... ..++++.+..|.|-+|+++||++.|+.-+..........+.. ++ ..+++-|
T Consensus 24 gkfdwr~~~vG~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~--~iS~dg~~lr~wn 101 (910)
T KOG2103|consen 24 GKFDWRQQLVGVKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLTN--TISVDGRYLRSWN 101 (910)
T ss_pred hhcchhhhcccceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcceeE--EEccCCcEEEeec
Confidence 56677766655332222222 468999999999999999999999999887643321111122 23 6789999
Q ss_pred cCCCceeeeeecCC
Q 039692 101 RSNGELVWSTQIDP 114 (417)
Q Consensus 101 ~~tG~~~W~~~~~~ 114 (417)
..+|-..|+.++..
T Consensus 102 ~~~g~l~~~i~l~~ 115 (910)
T KOG2103|consen 102 TNNGILDWEIELAD 115 (910)
T ss_pred CCCceeeeeccccc
Confidence 99999999999764
No 59
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=5.2 Score=41.63 Aligned_cols=167 Identities=15% Similarity=0.220 Sum_probs=104.4
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~ 230 (417)
+|.|.-.|+.+++++-.++. .|+++|. .++.++.. .+..+..+|.++-++..
T Consensus 89 sg~i~EwDl~~lk~~~~~d~-----------~gg~IWs--iai~p~~~---------------~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDS-----------NGGAIWS--IAINPENT---------------ILAIGCDDGVLYDFSIG 140 (691)
T ss_pred CceEEEEecccCceeEEecC-----------CCcceeE--EEeCCccc---------------eEEeecCCceEEEEecC
Confidence 48999999999999987664 3578884 34444322 12344567788999999
Q ss_pred CCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 231 SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 231 tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
.+++..+....... +. +.++..+++ +..|+.++.||.+.+.|..+|..+-..
T Consensus 141 p~~I~~~r~l~rq~--------------------------sR-vLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~ 192 (691)
T KOG2048|consen 141 PDKITYKRSLMRQK--------------------------SR-VLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHII 192 (691)
T ss_pred CceEEEEeeccccc--------------------------ce-EEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEe
Confidence 99999888776542 11 233444443 445888999999999999999877644
Q ss_pred ecCCCCC---CCcceeccc-ccCCeEEEEeccCCceeeeecCCC---------CCCCccceeeeCCeEEeccCCCC
Q 039692 311 LAGPGGR---EGGGVWGAA-TDGRRVYTNIVNNDRIIWSTADPS---------NETAHGPVTVVNGVLFAGSVSAN 373 (417)
Q Consensus 311 ~~~~~~~---~g~~~~~~~-~~~~~vy~~~~~~~~~~W~~~~~~---------~~~~~~p~~~~~~~v~~~~~~g~ 373 (417)
+..-... .--..|++. ..++++...|..+.-.-|...... ....+-.+...++.||.++-++.
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 4321111 112334432 466777777777776777654321 12222233233478888877766
No 60
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.35 E-value=10 Score=35.94 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=47.0
Q ss_pred eEEEEEecCCC--ceeeeeecCCCCCcceeeceeE---EcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 94 AVVVAVSRSNG--ELVWSTQIDPRPRSQITMSGSV---YMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 94 ~~l~ald~~tG--~~~W~~~~~~~~~~~~~~sp~v---~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
.++..+|.+++ +++|+-...++..-.-..|-++ .+|+++++...+.. +-.||.+|.++|+..+-.
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~----------nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHA----------NLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcc----------eeeeEEEcccCCceeecc
Confidence 89999999888 5689988765432111223333 36889988875432 347999999999999865
Q ss_pred ee
Q 039692 169 YM 170 (417)
Q Consensus 169 ~~ 170 (417)
+.
T Consensus 148 ~~ 149 (339)
T PF09910_consen 148 SN 149 (339)
T ss_pred CC
Confidence 54
No 61
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=92.06 E-value=10 Score=35.33 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=26.1
Q ss_pred ceEEEEECCCCcEEEEeecCCCCC-CCcceecccccCCeEEEEeccC
Q 039692 294 GFAWAFDRDSGDIIWFKLAGPGGR-EGGGVWGAATDGRRVYTNIVNN 339 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~~~~~~~-~g~~~~~~~~~~~~vy~~~~~~ 339 (417)
..+.+||.+|| .|......+-. .|+.+-+.-+.++.+|+.....
T Consensus 216 ~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 216 DTIMALDLATG--AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYN 260 (392)
T ss_pred ceeEEEecccc--ccccCCCCCcCCCcccccceEEEcceEEEecccc
Confidence 47889998876 57766432212 2333334556778888875433
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=14 Score=35.10 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=55.0
Q ss_pred CEEEEeccCCcEEEEECCCCccceEeecccccC------CcceeeEEee--eeeEEEEEecCCCceeeeeecCCCCCcce
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG------LSGTGIVVNV--TVAVVVAVSRSNGELVWSTQIDPRPRSQI 120 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~------~~p~~~v~~~--~v~~l~ald~~tG~~~W~~~~~~~~~~~~ 120 (417)
..+...+.+..|.-+|..+|+.+=...-...-. ..+.-++... ....|..|++.|-+-+=-++--......+
T Consensus 27 ~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSL 106 (311)
T ss_pred CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEE
Confidence 356666778899999999999877766653210 0010011111 23678888888877765554222222345
Q ss_pred eeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCC
Q 039692 121 TMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVR 160 (417)
Q Consensus 121 ~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~ 160 (417)
..+| .+..|+..+. |..|.-.|.+
T Consensus 107 ~~sP---~~d~FlS~S~-------------D~tvrLWDlR 130 (311)
T KOG1446|consen 107 SVSP---KDDTFLSSSL-------------DKTVRLWDLR 130 (311)
T ss_pred EecC---CCCeEEeccc-------------CCeEEeeEec
Confidence 6677 3345554443 5666666665
No 63
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=0.98 Score=47.90 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=62.4
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEeecCCCCCC-Cccee-cccccCCeEEEEeccCCceeeeecCCCCCCCccceeee
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGRE-GGGVW-GAATDGRRVYTNIVNNDRIIWSTADPSNETAHGPVTVV 361 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~-g~~~~-~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~ 361 (417)
.+.+++.+..|.+.+|+++||+++|+.-..+.... |.... .+..++..++.-+.+.+.+.|+.+...+ ....-+.+.
T Consensus 47 ~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~~iS~dg~~lr~wn~~~g~l~~~i~l~~g-~~~~~~~v~ 125 (910)
T KOG2103|consen 47 SKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLTNTISVDGRYLRSWNTNNGILDWEIELADG-FKGLLLEVN 125 (910)
T ss_pred CceEEEEeccchhheecccCCcEEEEEeccCCCcccCcceeEEEccCCcEEEeecCCCceeeeecccccc-cceeEEEEc
Confidence 57889999999999999999999999987643221 22222 2567788999999999999999987653 445555556
Q ss_pred CCeEEecc
Q 039692 362 NGVLFAGS 369 (417)
Q Consensus 362 ~~~v~~~~ 369 (417)
.++.++..
T Consensus 126 ~~i~v~~g 133 (910)
T KOG2103|consen 126 KGIAVLNG 133 (910)
T ss_pred cceEEEcc
Confidence 66555444
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.81 E-value=29 Score=38.12 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccc-c---CCcce---eeEEeeeeeEEEEEecCCCceeeeeecCCCCCcce
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKL-T---GLSGT---GIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQI 120 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~---~~~p~---~~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~ 120 (417)
+..|+.++.++.|..+|..+++.+.++..... + ..+|. -++..+..+.+..+|..+++.+-....... +
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~----v 620 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN----I 620 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC----e
Confidence 34677777899999999999988777654321 1 11111 112222348888899888877655442211 1
Q ss_pred eeceeE-EcC-eEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 121 TMSGSV-YMG-AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 121 ~~sp~v-~~~-~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
.+.... .++ .+.++.. ++.|+.+|.++++.
T Consensus 621 ~~v~~~~~~g~~latgs~--------------dg~I~iwD~~~~~~ 652 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSA--------------DHKVYYYDLRNPKL 652 (793)
T ss_pred EEEEEeCCCCCEEEEEeC--------------CCeEEEEECCCCCc
Confidence 111000 123 3444544 68999999987764
No 65
>PHA02713 hypothetical protein; Provisional
Probab=90.62 E-value=25 Score=36.98 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=35.5
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
..++++|..+.+ |.. +.+.+......+-++.+++||+-.+..... .-..+.++|+.+. .|+.
T Consensus 320 ~~v~~Yd~~~n~--W~~-~~~m~~~R~~~~~~~~~g~IYviGG~~~~~--------~~~sve~Ydp~~~--~W~~ 381 (557)
T PHA02713 320 NKVYKINIENKI--HVE-LPPMIKNRCRFSLAVIDDTIYAIGGQNGTN--------VERTIECYTMGDD--KWKM 381 (557)
T ss_pred ceEEEEECCCCe--Eee-CCCCcchhhceeEEEECCEEEEECCcCCCC--------CCceEEEEECCCC--eEEE
Confidence 457888877663 753 332222222334456799999854421110 1246999999865 5875
No 66
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.45 E-value=10 Score=37.45 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=46.9
Q ss_pred CCcEEEEECCCCccceEeecccccCCcceeeEE---ee--ee---eEEEEEecCCCceeeeeecCCCCCcceeeceeE-E
Q 039692 57 NGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVV---NV--TV---AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSV-Y 127 (417)
Q Consensus 57 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~---~~--~v---~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v-~ 127 (417)
...||.+|+++|++.=-.+..+......+ +. +. ++ ..|+++|++|+|+.=-++++....+. .+-++ .
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~--~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~--gt~v~n~ 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGF--LSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY--GTWVANS 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-E--E-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE--EEEEE-T
T ss_pred CcceEEEEcccCEEEECccCCCCCccceE--EecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc--cceeeCC
Confidence 45799999999987422222211111111 22 11 12 58999999999887666665442211 12211 2
Q ss_pred cCeEEEEeCCccCccc--c--Cc-----ccCCCceEEEEeCCCCcee
Q 039692 128 MGAFYVGLSSLEEALP--A--DQ-----CCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 128 ~~~v~v~~~~~~~~~~--~--~~-----~~~~~g~l~ald~~tG~~~ 165 (417)
+++.+++......... . .. -..+...|+.+|.+||+..
T Consensus 135 d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 135 DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 4666666543211110 0 00 0234678999999999764
No 67
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.42 E-value=8.3 Score=40.59 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred eEEEE-Eccc------ceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCC-------------ceee
Q 039692 285 DVVVA-VQKS------GFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNND-------------RIIW 344 (417)
Q Consensus 285 ~~v~~-~~~~------G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~-------------~~~W 344 (417)
+.||+ ++.+ ..+..+|+.+++ |..-. +-...+...++++-++.||+....++ +-.|
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCc--eeccC--CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc
Confidence 45555 4555 357889988887 98832 22333555677788899999876554 6788
Q ss_pred eecCCC-CCCCccceeeeCCeEEeccC-CCC------------C------------CeecccccccCCeEEEecCeee
Q 039692 345 STADPS-NETAHGPVTVVNGVLFAGSV-SAN------------G------------STVYGGVPASYGCIYLGNGYTV 396 (417)
Q Consensus 345 ~~~~~~-~~~~~~p~~~~~~~v~~~~~-~g~------------g------------~~~~~sp~~~~g~lyv~~~~~~ 396 (417)
+.-.+. ....+.-+.+.++++|+... ++. - .....+.++.|++||+--|+..
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 876533 23344555677788887654 333 0 1222667788999999655443
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.17 E-value=0.92 Score=41.29 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=66.7
Q ss_pred EEECCEEEEeccCCcEEEEECCCCccceEeecccccCC---ccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCCcc
Q 039692 45 AVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL---SGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQ 119 (417)
Q Consensus 45 ~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~---~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~ 119 (417)
.+.+-.|..++.+|++..+|.+.|.+.=- -++.++.+ ++.+ .......+.|.-||.+|||++=.+.--....+.
T Consensus 152 ~v~~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 152 DVAEHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred EecccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 34555677778899999999999976211 11222211 1100 011112389999999999999877732111122
Q ss_pred eeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 120 ITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 120 ~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
+.+.-.-.+..|+-+++ +|.+|-.|..+++++=+++.
T Consensus 231 ldc~l~qsdthV~sgSE--------------DG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSE--------------DGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eeeeecccceeEEeccC--------------CceEEEEEeccceeeeeecc
Confidence 23332222344554444 79999999999999877665
No 69
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.95 E-value=22 Score=35.83 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=45.3
Q ss_pred eeeeEEEeCCc----------eeeCcEEECCEEEEecc---CCcEEEEECCCCccceEe-ecccccCCcceeeEEee--e
Q 039692 29 RLRWSFYAGKD----------ISATPAVANGVVYFPSW---NGYLYAVNAFNGALIWEQ-NLSKLTGLSGTGIVVNV--T 92 (417)
Q Consensus 29 ~~~W~~~~~~~----------~~~~p~~~~g~v~v~~~---~g~l~ald~~tG~~~W~~-~~~~~~~~~p~~~v~~~--~ 92 (417)
.++|.-..++. --++|++++++||+.+. -|.||..|+ +|+-+=++ ++.... |--+-.+| .
T Consensus 206 GklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdl-dGkDlrrHTnFtdYY---~R~~nsDGkrI 281 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDL-DGKDLRRHTNFTDYY---PRNANSDGKRI 281 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEecc-CCchhhhcCCchhcc---ccccCCCCcEE
Confidence 45777666551 14789999999998763 488999998 57654433 333321 11001122 1
Q ss_pred e----eEEEEEecCCCce
Q 039692 93 V----AVVVAVSRSNGEL 106 (417)
Q Consensus 93 v----~~l~ald~~tG~~ 106 (417)
+ |.+|-+|++|-++
T Consensus 282 vFq~~GdIylydP~td~l 299 (668)
T COG4946 282 VFQNAGDIYLYDPETDSL 299 (668)
T ss_pred EEecCCcEEEeCCCcCcc
Confidence 1 8889999876544
No 70
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.68 E-value=24 Score=35.39 Aligned_cols=145 Identities=10% Similarity=0.048 Sum_probs=79.5
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCe-EEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLP 172 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~ 172 (417)
-+||.+|-++-..+-...+..-+ +..+-..-+|. +++.++- ...+|.+|..++++.=-.+...
T Consensus 237 lrifqvDGk~N~~lqS~~l~~fP---i~~a~f~p~G~~~i~~s~r-------------rky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 237 LRIFQVDGKVNPKLQSIHLEKFP---IQKAEFAPNGHSVIFTSGR-------------RKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred EEEEEecCccChhheeeeeccCc---cceeeecCCCceEEEeccc-------------ceEEEEeeccccccccccCCCC
Confidence 57788886666655555543322 22222222555 4443332 5789999999887652222210
Q ss_pred CCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccC
Q 039692 173 DNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLV 252 (417)
Q Consensus 173 ~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~ 252 (417)
... .+ +-.-.+.+ .+..+......|.|+.|-++|++.+=.+...+.-
T Consensus 301 ~e~--~~--------~e~FeVSh---------------d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v-------- 347 (514)
T KOG2055|consen 301 VEE--KS--------MERFEVSH---------------DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVV-------- 347 (514)
T ss_pred ccc--ch--------hheeEecC---------------CCCeEEEcccCceEEeehhhhhhhhheeeeccEE--------
Confidence 000 00 00001111 1123344556788999999999988777765431
Q ss_pred CCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 253 PNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 253 ~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
+.-. +..+ ++.|++.+.+|.++.+|...-+.+-+.
T Consensus 348 -----------------~~~~---fsSd---sk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 348 -----------------SDFT---FSSD---SKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred -----------------eeEE---EecC---CcEEEEEcCCceEEEEecCCcceEEEE
Confidence 0111 1123 367888888999999999887655333
No 71
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.00 E-value=28 Score=36.73 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=55.1
Q ss_pred CcEEEEECCCCccceEeecc--cccCCcceee------EEee------eeeEEEEEecCCCceeeeeecCCCCCcceeec
Q 039692 58 GYLYAVNAFNGALIWEQNLS--KLTGLSGTGI------VVNV------TVAVVVAVSRSNGELVWSTQIDPRPRSQITMS 123 (417)
Q Consensus 58 g~l~ald~~tG~~~W~~~~~--~~~~~~p~~~------v~~~------~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~s 123 (417)
..+.++|++++ .|..-.. ....-..+.+ +.+| ....++.+|..+.+ |+. +.+........+
T Consensus 301 ~~ve~yd~~~~--~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~-~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 301 RSVECYDPKTN--EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTP-VAPMNTKRSDFG 375 (571)
T ss_pred ceeEEecCCcC--cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc--eec-cCCccCccccce
Confidence 46889999887 5554433 2211111111 1122 23788899988777 987 333332334445
Q ss_pred eeEEcCeEEEEeCC-ccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 124 GSVYMGAFYVGLSS-LEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 124 p~v~~~~v~v~~~~-~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
-++.+|.+|+-.+. +... -..+-++|+. +-.|..-.
T Consensus 376 v~~l~g~iYavGG~dg~~~---------l~svE~YDp~--~~~W~~va 412 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKS---------LNSVECYDPV--TNKWTPVA 412 (571)
T ss_pred eEEECCEEEEEeccccccc---------cccEEEecCC--CCcccccC
Confidence 56778998874432 2211 2478899986 56687544
No 72
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=87.53 E-value=3.8 Score=43.99 Aligned_cols=179 Identities=13% Similarity=0.186 Sum_probs=106.1
Q ss_pred CEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEeee-----eeEEEEEecCCCceeeeeecCCCCCcceeec
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVT-----VAVVVAVSRSNGELVWSTQIDPRPRSQITMS 123 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~-----v~~l~ald~~tG~~~W~~~~~~~~~~~~~~s 123 (417)
..+++.+-+ .+.|.+.++|.+.|...-...+. +|..+....+ .+.||-+-- +.-+-+.++.-. .....+
T Consensus 28 ~~~~~stid-~l~a~s~~~g~~~~~l~~~pvv~-~~~~~~~~~fl~~p~dgsly~l~~--~~sL~Klpftip--elv~~~ 101 (903)
T KOG1027|consen 28 NLLLVSTID-SLHAPSSETGFIKWTLSDDPVVA-SPDGVLQPAFLPDPRDGSLYTLGN--NLSLTKLPFTIP--ELVNAS 101 (903)
T ss_pred ccccccccc-cccCccccccceeeeeccCcccc-CCccccccccCCCccccceeeccC--CCccccCCccch--hhhccC
Confidence 567777777 99999999999999988764332 2332222221 266665542 333333332110 112334
Q ss_pred eeE-EcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccC
Q 039692 124 GSV-YMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQN 202 (417)
Q Consensus 124 p~v-~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~ 202 (417)
|.- -+|.+|.+.. .+..+.+|++||+..|++...... .
T Consensus 102 pcrssdGi~ysg~k--------------~d~~~lvD~~tg~~~~tf~~~~~~---------------~------------ 140 (903)
T KOG1027|consen 102 PCRSSDGILYSGSK--------------QDIWYLVDPKTGEIDYTFNTAEPI---------------K------------ 140 (903)
T ss_pred cccCCCCeEEeccc--------------ccceEEecCCccceeEEEecCCcc---------------h------------
Confidence 443 3666777765 478999999999999999873210 0
Q ss_pred CCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCe
Q 039692 203 NQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGR 282 (417)
Q Consensus 203 ~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~ 282 (417)
..++.+.....+.-.|.++-...|.......... ..+.+ .+.
T Consensus 141 ----------~~v~~grt~ytv~m~d~~~~~~~wn~t~~dy~a~-----------------------~~~~~-----~~~ 182 (903)
T KOG1027|consen 141 ----------QLVYLGRTNYTVTMYDKNVRGKTWNTTFGDYSAQ-----------------------YPSGV-----RGE 182 (903)
T ss_pred ----------hheecccceeEEecccCcccCceeeccccchhcc-----------------------CCCcc-----CCc
Confidence 1133444455666777777777776655432100 00010 111
Q ss_pred eeeEEEEEcccceEEEEECCCCcEEEEeecC
Q 039692 283 FRDVVVAVQKSGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 283 ~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~ 313 (417)
...-++.+.+|.+.-+|.++|+.+|..+..
T Consensus 183 -~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~ 212 (903)
T KOG1027|consen 183 -KMSHFHSLGNGYIVTVDSESGEKLWLQDLL 212 (903)
T ss_pred -eeEEEeecCCccEEeccCcccceeeccccC
Confidence 122333455889999999999999998864
No 73
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.50 E-value=28 Score=33.50 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=36.3
Q ss_pred eEEEEEecCCCce--eeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 94 AVVVAVSRSNGEL--VWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 94 ~~l~ald~~tG~~--~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
..++++|..+.+- .|+.- .+.+......+.++.++.||+....... .....++++|+++ ..|+.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~-~~lp~~~~~~~~~~~~~~iYv~GG~~~~--------~~~~~v~~yd~~~--~~W~~ 153 (323)
T TIGR03548 88 SSVYRITLDESKEELICETI-GNLPFTFENGSACYKDGTLYVGGGNRNG--------KPSNKSYLFNLET--QEWFE 153 (323)
T ss_pred eeEEEEEEcCCceeeeeeEc-CCCCcCccCceEEEECCEEEEEeCcCCC--------ccCceEEEEcCCC--CCeeE
Confidence 5788888877652 45432 2222111223445678999986542111 0125799999975 45874
No 74
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=87.16 E-value=27 Score=33.02 Aligned_cols=225 Identities=13% Similarity=0.083 Sum_probs=130.4
Q ss_pred EEEEeccCCcEEEEECCCCccceEeecccccC----Cccee--eEEeeee--eEEEEEecC--CCceeeeeecCCCCCcc
Q 039692 50 VVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG----LSGTG--IVVNVTV--AVVVAVSRS--NGELVWSTQIDPRPRSQ 119 (417)
Q Consensus 50 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~p~~--~v~~~~v--~~l~ald~~--tG~~~W~~~~~~~~~~~ 119 (417)
++.-++.+|+|...|.-|....=-++++.... .+|.+ +...|.. -.+|-+..+ .|.+.=+.++.+.. ++
T Consensus 69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-gy 147 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-GY 147 (343)
T ss_pred eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc-ce
Confidence 45555678999999988887766666664211 23432 2334444 444444433 45555555554433 34
Q ss_pred eeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCc
Q 039692 120 ITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQ 199 (417)
Q Consensus 120 ~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~ 199 (417)
+.+.-.+.++.++.++. +....-.|.++|+++=.+.-. .|..+ +.++.+...
T Consensus 148 lScC~f~dD~~ilT~SG--------------D~TCalWDie~g~~~~~f~GH----------~gDV~---slsl~p~~~- 199 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSG--------------DMTCALWDIETGQQTQVFHGH----------TGDVM---SLSLSPSDG- 199 (343)
T ss_pred eEEEEEcCCCceEecCC--------------CceEEEEEcccceEEEEecCC----------cccEE---EEecCCCCC-
Confidence 55555566777888776 578888999999988666531 11111 111111100
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEec
Q 039692 200 KQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIST 279 (417)
Q Consensus 200 ~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~ 279 (417)
.....+.-+..-...|.+.|.-+-.|.....+ + ++.-+. .
T Consensus 200 -------------ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD-----------------------I-Nsv~ff---P 239 (343)
T KOG0286|consen 200 -------------NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD-----------------------I-NSVRFF---P 239 (343)
T ss_pred -------------CeEEecccccceeeeeccCcceeEeecccccc-----------------------c-ceEEEc---c
Confidence 11123344556666777777666555544332 2 232333 2
Q ss_pred CCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeeec
Q 039692 280 NGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 280 ~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~ 347 (417)
+ +..+..+++|+....+|......+=.+.... ...|-.+......++.+|+...+..--+|..-
T Consensus 240 ~---G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 240 S---GDAFATGSDDATCRLYDLRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred C---CCeeeecCCCceeEEEeecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 3 3567778899999999999988887776431 12222222345678888888777778888764
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=86.85 E-value=27 Score=32.66 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=24.1
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEee
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~ 311 (417)
++.|+.+.++|.+...|+.+|+++=...
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~ 186 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSD 186 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeech
Confidence 6789999999999999999998776554
No 76
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=5.8 Score=35.71 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=85.8
Q ss_pred cCccccccceeeeEEEeCC-ce-eeCcEEECCEEEEec-cCCcEEEEECCCCccceEeecccccCCcceeeEEee--ee-
Q 039692 20 INPVTVRNLRLRWSFYAGK-DI-SATPAVANGVVYFPS-WNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV--TV- 93 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~-~~-~~~p~~~~g~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~--~v- 93 (417)
|..++..++++.|+.++.. .+ .-.....++.+|.-+ .+|.-+.+|++|=+.+=+++..+.- =++..++ .+
T Consensus 70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG----WgLt~d~~~Lim 145 (262)
T COG3823 70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG----WGLTSDDKNLIM 145 (262)
T ss_pred eEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc----eeeecCCcceEe
Confidence 5566778899999999983 33 344556788999777 4688899999988877666665421 0112221 11
Q ss_pred ----eEEEEEecCCCceeeeeecCCCCCcceeecee-------EEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCC
Q 039692 94 ----AVVVAVSRSNGELVWSTQIDPRPRSQITMSGS-------VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNG 162 (417)
Q Consensus 94 ----~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~-------v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG 162 (417)
..|+-.|++|=+++=+.++. ..+.|+ -++|.||.-... ...|..+|+++|
T Consensus 146 sdGsatL~frdP~tfa~~~~v~VT------~~g~pv~~LNELE~VdG~lyANVw~-------------t~~I~rI~p~sG 206 (262)
T COG3823 146 SDGSATLQFRDPKTFAELDTVQVT------DDGVPVSKLNELEWVDGELYANVWQ-------------TTRIARIDPDSG 206 (262)
T ss_pred eCCceEEEecCHHHhhhcceEEEE------ECCeecccccceeeeccEEEEeeee-------------ecceEEEcCCCC
Confidence 67777777776666555532 122232 357788876654 568999999999
Q ss_pred ceeceeeec
Q 039692 163 RIIWQTYML 171 (417)
Q Consensus 163 ~~~W~~~~~ 171 (417)
+++=-++..
T Consensus 207 rV~~widlS 215 (262)
T COG3823 207 RVVAWIDLS 215 (262)
T ss_pred cEEEEEEcc
Confidence 998666663
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=86.48 E-value=56 Score=35.91 Aligned_cols=192 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred CEEEEeccCCcEEEEECCCCccceEeecccccCC----ccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCCcceee
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL----SGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM 122 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~----~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~ 122 (417)
..++.++.++.+..+|.++++.+-.+.....+.+ ++.+ ++.....+.++.+|..+++.....-.... ..+..
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~--~~V~~ 666 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS--KTVSY 666 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC--CCEEE
Confidence 3566778899999999998877655443321110 0100 11122338899999877663222111111 11111
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCc------eeceeeecCCCCCCCCCCCCccccCCCceeecc
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGR------IIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVI 196 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~------~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~ 196 (417)
-....+..++.++. ++.|..+|..++. .+-++.... . .+ ...++++
T Consensus 667 v~f~~~~~lvs~s~--------------D~~ikiWd~~~~~~~~~~~~l~~~~gh~----------~-~i--~~v~~s~- 718 (793)
T PLN00181 667 VRFVDSSTLVSSST--------------DNTLKLWDLSMSISGINETPLHSFMGHT----------N-VK--NFVGLSV- 718 (793)
T ss_pred EEEeCCCEEEEEEC--------------CCEEEEEeCCCCccccCCcceEEEcCCC----------C-Ce--eEEEEcC-
Confidence 11112333444443 5788888876442 111111000 0 00 0011111
Q ss_pred cCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEE
Q 039692 197 RRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLT 276 (417)
Q Consensus 197 ~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~ 276 (417)
.+..+..++.++.+..++..+++.+|.+.....+..... .. ......+..
T Consensus 719 --------------~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~---------------~~-~~~~~~V~~ 768 (793)
T PLN00181 719 --------------SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL---------------EV-DDASQFISS 768 (793)
T ss_pred --------------CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc---------------cc-CCCCcEEEE
Confidence 123455667788999999888888877655432211000 00 001223444
Q ss_pred EecCCeeeeEEEEEcccceEEEEEC
Q 039692 277 ISTNGRFRDVVVAVQKSGFAWAFDR 301 (417)
Q Consensus 277 ~~~~G~~~~~v~~~~~~G~l~ald~ 301 (417)
+..... +..+++++.+|.+..+|.
T Consensus 769 v~ws~~-~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQ-SSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCC-CCeEEEecCCCcEEEEec
Confidence 433332 457777888888887763
No 78
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.93 E-value=5.6 Score=36.55 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=63.8
Q ss_pred EEeccCCcEEEEECC------CCccceEeecccccCCccee----e-EE--ee------eeeEEEEEecCCCceeeeeec
Q 039692 52 YFPSWNGYLYAVNAF------NGALIWEQNLSKLTGLSGTG----I-VV--NV------TVAVVVAVSRSNGELVWSTQI 112 (417)
Q Consensus 52 ~v~~~~g~l~ald~~------tG~~~W~~~~~~~~~~~p~~----~-v~--~~------~v~~l~ald~~tG~~~W~~~~ 112 (417)
.+...+|.+++..-+ -=|.+|++..+....+.+.. + ++ .+ -.+.+|+.|+++|++.=.++-
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence 334456999988632 24678999988665444421 1 11 11 129999999999999877763
Q ss_pred CCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 113 DPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 113 ~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.....-.+... -.++.|+.|.+ ||.+...|.+|++.+=....
T Consensus 155 HtDYvH~vv~R--~~~~qilsG~E--------------DGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 155 HTDYVHSVVGR--NANGQILSGAE--------------DGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred Ccceeeeeeec--ccCcceeecCC--------------CccEEEEeccccceeEEecc
Confidence 21110001110 12456777665 69999999999998866554
No 79
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.64 E-value=43 Score=32.93 Aligned_cols=203 Identities=12% Similarity=0.060 Sum_probs=104.7
Q ss_pred EECCEEEEeccCCcEEEEECC-----CCccceEeecccccC-----CcceeeEEee--eeeEEEEEecCCCceeeeeecC
Q 039692 46 VANGVVYFPSWNGYLYAVNAF-----NGALIWEQNLSKLTG-----LSGTGIVVNV--TVAVVVAVSRSNGELVWSTQID 113 (417)
Q Consensus 46 ~~~g~v~v~~~~g~l~ald~~-----tG~~~W~~~~~~~~~-----~~p~~~v~~~--~v~~l~ald~~tG~~~W~~~~~ 113 (417)
..++.|..+..+|.|.....+ .-+++|-...++... ..|--+...| -+..|-..|+++.+++|+.+-.
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 468888888888888877776 334444444332211 1121112233 2367777888888999998842
Q ss_pred CCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCc-eeceeeecCCCCCCCCCCCCccccCCCce
Q 039692 114 PRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGR-IIWQTYMLPDNGGKRGGYSGAAVWGSSPA 192 (417)
Q Consensus 114 ~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~~~gg~~~~~~pa 192 (417)
+...-.+. -|+-.-+..|+..... ....-||.-+.|.-||.+.++ ++=+++..+...+ +.+
T Consensus 193 pnD~L~Lr-VPvW~tdi~Fl~g~~~----~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is-------------~~~ 254 (412)
T KOG3881|consen 193 PNDRLGLR-VPVWITDIRFLEGSPN----YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS-------------STG 254 (412)
T ss_pred CCccccce-eeeeeccceecCCCCC----ceEEEEecceeEEEecCcccCcceeEeccccCcce-------------eee
Confidence 22111111 1211111111111000 000012235789999998763 4445554332211 112
Q ss_pred eecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCc
Q 039692 193 IDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAP 272 (417)
Q Consensus 193 ~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p 272 (417)
..+ ....+|++...+.|..||.++|+.+=..--+-.. +..
T Consensus 255 l~p---------------~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-------------------------sir 294 (412)
T KOG3881|consen 255 LTP---------------SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-------------------------SIR 294 (412)
T ss_pred ecC---------------CCcEEEEecccchhheecccCceeeccccCCccC-------------------------Ccc
Confidence 222 2234778888899999999999887542111000 001
Q ss_pred eEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 273 MLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 273 ~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
-|. ...+ ..++..++-|..|..+|.+|-+++-+.
T Consensus 295 sih---~hp~-~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 295 SIH---CHPT-HPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eEE---EcCC-CceEEeeccceeEEEeecccchhhhhh
Confidence 111 1111 346666778999999999986665444
No 80
>PHA02713 hypothetical protein; Provisional
Probab=83.78 E-value=29 Score=36.43 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=38.5
Q ss_pred eEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCC-------------ceeeeecCCC-CCCCccceee
Q 039692 295 FAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNND-------------RIIWSTADPS-NETAHGPVTV 360 (417)
Q Consensus 295 ~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~-------------~~~W~~~~~~-~~~~~~p~~~ 360 (417)
.++++|+.+.+ |..-.+ -...+.....++-++.||+....++ +-.|+.-.+. .......+++
T Consensus 321 ~v~~Yd~~~n~--W~~~~~--m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~ 396 (557)
T PHA02713 321 KVYKINIENKI--HVELPP--MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV 396 (557)
T ss_pred eEEEEECCCCe--EeeCCC--CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE
Confidence 58899988764 854322 1122334455667788998765432 4567763321 1222233446
Q ss_pred eCCeEEec
Q 039692 361 VNGVLFAG 368 (417)
Q Consensus 361 ~~~~v~~~ 368 (417)
.++.+|+-
T Consensus 397 ~~g~IYvi 404 (557)
T PHA02713 397 LDQYIYII 404 (557)
T ss_pred ECCEEEEE
Confidence 66777763
No 81
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=83.44 E-value=39 Score=34.56 Aligned_cols=141 Identities=12% Similarity=0.166 Sum_probs=78.3
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~ 230 (417)
|++++++|-+||+++=.+...+... |.++. .+..|+. ..+...+.+..+-..|..
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHk--------GsIfa--lsWsPDs---------------~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHK--------GSIFA--LSWSPDS---------------TQFLTVSADKTIKIWDVS 265 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCcc--------ccEEE--EEECCCC---------------ceEEEecCCceEEEEEee
Confidence 7999999999999998877533222 12221 1111111 012223344556666666
Q ss_pred CCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 231 SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 231 tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
+.++.-++..+..-. |. ---.|.+ ++.|+..+-+|.|--|++.+++++-..
T Consensus 266 ~~slv~t~~~~~~v~-------------------dq---qvG~lWq-------kd~lItVSl~G~in~ln~~d~~~~~~i 316 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVE-------------------DQ---QVGCLWQ-------KDHLITVSLSGTINYLNPSDPSVLKVI 316 (603)
T ss_pred ccceEEEeecCCchh-------------------ce---EEEEEEe-------CCeEEEEEcCcEEEEecccCCChhhee
Confidence 666655554443210 00 0123331 467777888999999999999866554
Q ss_pred ecCCCCCCCcceecccccCCeEEEEeccCCceeeeecC
Q 039692 311 LAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTAD 348 (417)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~ 348 (417)
.. + ...-......-++..+|-.+.++.-..|....
T Consensus 317 ~G-H--nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 317 SG-H--NKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred cc-c--ccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 42 1 00011112334667788777777766776543
No 82
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.38 E-value=7.5 Score=42.81 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=60.0
Q ss_pred cccCCCCCCeEEEEECCCCceEEEecCCCC--cceeeeccCCCCCCCCCCC-CCCCccCCCceEEEEecCCeeeeEEEEE
Q 039692 214 CISSDIYANSIVALDIDSGRIAWAKPLGGY--DIFYFTCLVPNNPDCPPGP-NLDADFGEAPMLLTISTNGRFRDVVVAV 290 (417)
Q Consensus 214 ~v~~~~~~~~l~ald~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~c~~~~-~~~~~~~~~p~v~~~~~~G~~~~~v~~~ 290 (417)
.||.+..+|.|+++|+++|.++..+-.... ....+. .+.. .+++-+..+|++.|...+|+-+.+|+.+
T Consensus 584 ~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t---------~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~ 654 (1036)
T COG3419 584 VVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLT---------APGYTAHQYYVDGSPTAADAYDNGQWRSVLVGG 654 (1036)
T ss_pred eEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhc---------CCCcccccceecCCceeehhhcCCcceEEEEee
Confidence 577788899999999999999987764311 000000 0111 2344456799999998888755555544
Q ss_pred cc--cceEEEEECCC-----CcEEEEeecC
Q 039692 291 QK--SGFAWAFDRDS-----GDIIWFKLAG 313 (417)
Q Consensus 291 ~~--~G~l~ald~~t-----G~~lW~~~~~ 313 (417)
.. ...|||||..+ -+++|.....
T Consensus 655 ~G~GG~glyALDVTdP~~~~~~~Lw~~~~~ 684 (1036)
T COG3419 655 LGAGGRGLYALDVTDPDFSNSNLLWENNSN 684 (1036)
T ss_pred cCCCCceeEEEEccCccccCCcchhcccCC
Confidence 32 34699999865 3588988763
No 83
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=83.35 E-value=4.1 Score=43.79 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=72.9
Q ss_pred eeCcEEE-CCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee-eeeEEEEEecCCCceeeeeecCCCCCc
Q 039692 41 SATPAVA-NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV-TVAVVVAVSRSNGELVWSTQIDPRPRS 118 (417)
Q Consensus 41 ~~~p~~~-~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~-~v~~l~ald~~tG~~~W~~~~~~~~~~ 118 (417)
.++|... +|.+|.+...+.-+.+|.+||+..|.+.....+. .. +.-+ +--.+...|..+-...|.........
T Consensus 99 ~~~pcrssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~~--~~--v~~grt~ytv~m~d~~~~~~~wn~t~~dy~a- 173 (903)
T KOG1027|consen 99 NASPCRSSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPIK--QL--VYLGRTNYTVTMYDKNVRGKTWNTTFGDYSA- 173 (903)
T ss_pred ccCcccCCCCeEEecccccceEEecCCccceeEEEecCCcch--hh--eecccceeEEecccCcccCceeeccccchhc-
Confidence 4455544 7789999999999999999999999999876332 11 2222 33555666766666778777543211
Q ss_pred ceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeec
Q 039692 119 QITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYML 171 (417)
Q Consensus 119 ~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~ 171 (417)
...++.-......++..+ +|.+.-+|.++|+.+|..+..
T Consensus 174 -~~~~~~~~~~~~~~~~~~-------------~g~i~t~D~~~g~~~~~q~~~ 212 (903)
T KOG1027|consen 174 -QYPSGVRGEKMSHFHSLG-------------NGYIVTVDSESGEKLWLQDLL 212 (903)
T ss_pred -cCCCccCCceeEEEeecC-------------CccEEeccCcccceeeccccC
Confidence 122222222234444432 588889999999999987763
No 84
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.28 E-value=47 Score=32.38 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=47.1
Q ss_pred cccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEccc
Q 039692 214 CISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKS 293 (417)
Q Consensus 214 ~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~ 293 (417)
....++.++.|-.+|..||..+- ...+++.|-- .-.+. .. ++.|+.+.+|
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~--tL~ghdnwVr----------------------~~af~---p~---Gkyi~ScaDD 355 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLF--TLVGHDNWVR----------------------GVAFS---PG---GKYILSCADD 355 (406)
T ss_pred EEEeecccceEEEEeccCCeEEE--EEecccceee----------------------eeEEc---CC---CeEEEEEecC
Confidence 45567788999999999998885 4445666621 11222 12 5688888999
Q ss_pred ceEEEEECCCCcEEEEee
Q 039692 294 GFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~ 311 (417)
+.|.+-|.++++-.=..+
T Consensus 356 ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CcEEEEEeccceeeeccC
Confidence 999999999886543333
No 85
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=82.98 E-value=16 Score=36.55 Aligned_cols=126 Identities=10% Similarity=0.105 Sum_probs=64.6
Q ss_pred ccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccc
Q 039692 215 ISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSG 294 (417)
Q Consensus 215 v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G 294 (417)
+..++..+.||+...+||+++-........ +..++..+. +.+++.+++||
T Consensus 96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-----------------------------ITcL~fs~d-gs~iiTgskDg 145 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSGILLNVLSAHYQS-----------------------------ITCLKFSDD-GSHIITGSKDG 145 (476)
T ss_pred EEeecccCcEEEEEeccccHHHHHHhhccc-----------------------------eeEEEEeCC-CcEEEecCCCc
Confidence 344456789999999999987544322211 111111221 56888888888
Q ss_pred eEEEEECC-------CC--cE--EEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeeecCCC--------CCCCc
Q 039692 295 FAWAFDRD-------SG--DI--IWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTADPS--------NETAH 355 (417)
Q Consensus 295 ~l~ald~~-------tG--~~--lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~--------~~~~~ 355 (417)
.+++-+.. ++ ++ .|....-+- . ....+..-.+.+||....+..-.+|...... ....+
T Consensus 146 ~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI--T-Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~a 222 (476)
T KOG0646|consen 146 AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI--T-DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKA 222 (476)
T ss_pred cEEEEEEEeecccccCCCccceeeeccCccee--E-EEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCccee
Confidence 77654431 11 11 122221000 0 0000111133466766666666666654321 12222
Q ss_pred cceeeeCCeEEeccCCCC
Q 039692 356 GPVTVVNGVLFAGSVSAN 373 (417)
Q Consensus 356 ~p~~~~~~~v~~~~~~g~ 373 (417)
-.+-.++.++|+|+++|.
T Consensus 223 v~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGK 240 (476)
T ss_pred EEEcccccEEEecCCcce
Confidence 223256789999999887
No 86
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.39 E-value=75 Score=34.08 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=56.8
Q ss_pred cccCCcccCcccccccee-eeEEEeCCce------eeCc-----EEECCEEEEeccCCcEEEEECCCCccceEeeccccc
Q 039692 13 YAYGEVLINPVTVRNLRL-RWSFYAGKDI------SATP-----AVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLT 80 (417)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~-~W~~~~~~~~------~~~p-----~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 80 (417)
|+|+-|.|.+. .+++|+ +|-..-+-.+ .++. ...+..|+-.+.||+|.|+|.+.++--=.+..+.++
T Consensus 358 YSpDgq~iaTG-~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 358 YSPDGQLIATG-AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred ECCCCcEEEec-cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce
Confidence 78887744443 678887 7875543322 1111 123556667778999999999888766666666554
Q ss_pred CCcceeeEE-ee-ee-------eEEEEEecCCCceeee
Q 039692 81 GLSGTGIVV-NV-TV-------AVVVAVSRSNGELVWS 109 (417)
Q Consensus 81 ~~~p~~~v~-~~-~v-------~~l~ald~~tG~~~W~ 109 (417)
..+... ++ .+ .+ -.++..+.+||+++=.
T Consensus 437 Qfscva-vD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 437 QFSCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred eeeEEE-EcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 433321 11 11 11 5566777778877643
No 87
>PTZ00420 coronin; Provisional
Probab=81.74 E-value=74 Score=33.53 Aligned_cols=104 Identities=11% Similarity=-0.035 Sum_probs=59.4
Q ss_pred CEEEEeccCCcEEEEECCCCccc--------eEeecc-cc---cCCccee--e-EEeeeeeEEEEEecCCCceeeeeecC
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALI--------WEQNLS-KL---TGLSGTG--I-VVNVTVAVVVAVSRSNGELVWSTQID 113 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~--------W~~~~~-~~---~~~~p~~--~-v~~~~v~~l~ald~~tG~~~W~~~~~ 113 (417)
..++.++.++.+...|..++... ..+... .. +..+|.+ + +..+..+.+..+|..+++.+.+....
T Consensus 88 ~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~ 167 (568)
T PTZ00420 88 EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP 167 (568)
T ss_pred CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 46677778899999998765321 111111 11 1122321 1 12234488999999999988776532
Q ss_pred CCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 114 PRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 114 ~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
.. ...+..+| ++.+++.... ++.|..+|+++|+.+-++.
T Consensus 168 ~~-V~Slswsp---dG~lLat~s~-------------D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 168 KK-LSSLKWNI---KGNLLSGTCV-------------GKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred Cc-EEEEEECC---CCCEEEEEec-------------CCEEEEEECCCCcEEEEEe
Confidence 21 11122222 5555554432 6899999999998875543
No 88
>PHA02790 Kelch-like protein; Provisional
Probab=81.52 E-value=64 Score=33.13 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=57.3
Q ss_pred eeEEEEEccc---ceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccC-----------CceeeeecCC
Q 039692 284 RDVVVAVQKS---GFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNN-----------DRIIWSTADP 349 (417)
Q Consensus 284 ~~~v~~~~~~---G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~-----------~~~~W~~~~~ 349 (417)
++.||+.+.. ..+..+|+.++ .|+.-.+.+ ........++.++.||+..... .+-.|+.-.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~--~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLL--KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCC--eEEECCCCC--CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 3456655432 34667776544 587643211 1223334566788899874422 2457876433
Q ss_pred C-CCCCccceeeeCCeEEeccCCCC------------C----CeecccccccCCeEEEecCee
Q 039692 350 S-NETAHGPVTVVNGVLFAGSVSAN------------G----STVYGGVPASYGCIYLGNGYT 395 (417)
Q Consensus 350 ~-~~~~~~p~~~~~~~v~~~~~~g~------------g----~~~~~sp~~~~g~lyv~~~~~ 395 (417)
. .+.....+++.++.+|+-...-. . .....+.++.+|+||+--|+.
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCccccceEEEECCEEEEECCceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 2 12222334466777777542111 1 112256677899999966653
No 89
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=80.91 E-value=8.1 Score=36.02 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=25.6
Q ss_pred ccccccCCeEEEecCeeeeccCCCCCCCCCCEEEEEEe
Q 039692 379 GGVPASYGCIYLGNGYTVSLGKFHPTWTPGTSLYAFCT 416 (417)
Q Consensus 379 ~sp~~~~g~lyv~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
-|.-+.||+||+--||...+---| |.||.|.+
T Consensus 244 HS~fvYng~~Y~FGGYng~ln~Hf------ndLy~FdP 275 (392)
T KOG4693|consen 244 HSTFVYNGKMYMFGGYNGTLNVHF------NDLYCFDP 275 (392)
T ss_pred cceEEEcceEEEecccchhhhhhh------cceeeccc
Confidence 456888999999999988765556 88888864
No 90
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=80.47 E-value=46 Score=30.39 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=27.5
Q ss_pred ceEEEEECCCCcEEEEee-cCCCCCCCcceecccccCCeEEEEeccCCceeeeecC
Q 039692 294 GFAWAFDRDSGDIIWFKL-AGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTAD 348 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~-~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~ 348 (417)
|.++.++.+ |+..-... .. ...-.....+++.+|+.+...++ +|+++.
T Consensus 115 g~v~~~~~~-~~~~~~~~~~~-----~pNGi~~s~dg~~lyv~ds~~~~-i~~~~~ 163 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVADGLG-----FPNGIAFSPDGKTLYVADSFNGR-IWRFDL 163 (246)
T ss_dssp EEEEEEETT-SEEEEEEEEES-----SEEEEEEETTSSEEEEEETTTTE-EEEEEE
T ss_pred cceEEECCC-CeEEEEecCcc-----cccceEECCcchheeecccccce-eEEEec
Confidence 789999988 66433222 21 01111233467788888765554 676664
No 91
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=80.47 E-value=64 Score=31.99 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=30.4
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
..|+.+|.++|+..-........ .....+| .+..+++..... ....|+.+|..+|+.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~-~~~~~sp--Dg~~l~~~~~~~-----------~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMN-GAPAFSP--DGSKLAVSLSKD-----------GNPDIYVMDLDGKQL 270 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCc-cceEECC--CCCEEEEEECCC-----------CCccEEEEECCCCCE
Confidence 57899999988764333322111 1122223 233465544321 124799999987754
No 92
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.26 E-value=77 Score=32.29 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=59.7
Q ss_pred CC-EEEEeccCCcEEEEEC-CCCccceEeecccc-c---CCccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCCcc
Q 039692 48 NG-VVYFPSWNGYLYAVNA-FNGALIWEQNLSKL-T---GLSGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQ 119 (417)
Q Consensus 48 ~g-~v~v~~~~g~l~ald~-~tG~~~W~~~~~~~-~---~~~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~ 119 (417)
++ .+.-++.|..|..+|. +.|+.+=..+-... + ..+|.+ ++.....+.++..|.++|+.+=...........
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 44 3334456788888888 45566555543321 1 112221 122224488899999998888776654332222
Q ss_pred eeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCcee
Q 039692 120 ITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 120 ~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~ 165 (417)
+..++ ++.+++..+ +++.|..+|..+|..+
T Consensus 294 ~~f~~---d~~~l~s~s-------------~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 294 LAFSP---DGNLLVSAS-------------YDGTIRVWDLETGSKL 323 (456)
T ss_pred EEECC---CCCEEEEcC-------------CCccEEEEECCCCcee
Confidence 22333 566555444 2799999999999966
No 93
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=78.42 E-value=4.5 Score=40.42 Aligned_cols=101 Identities=15% Similarity=0.214 Sum_probs=64.9
Q ss_pred ccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccc
Q 039692 215 ISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSG 294 (417)
Q Consensus 215 v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G 294 (417)
....+++..+--.|.+||+.+-++..+.. +.| +....++ .++++++..++
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~------------~~c----------------vkf~pd~--~n~fl~G~sd~ 322 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFHLDKV------------PTC----------------VKFHPDN--QNIFLVGGSDK 322 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEecCCC------------cee----------------eecCCCC--CcEEEEecCCC
Confidence 34567889999999999999999887642 222 2222333 36788889999
Q ss_pred eEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccC-CceeeeecCC
Q 039692 295 FAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNN-DRIIWSTADP 349 (417)
Q Consensus 295 ~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~-~~~~W~~~~~ 349 (417)
+|...|..+|+++=++.- .+|....---+++++-|+...++ .-++|+...+
T Consensus 323 ki~~wDiRs~kvvqeYd~----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDR----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred cEEEEeccchHHHHHHHh----hhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 999999999997655442 11121111123455555555444 4677877654
No 94
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=78.10 E-value=19 Score=28.91 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=15.3
Q ss_pred EcccceEEEEECCCCcEEEEe
Q 039692 290 VQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 290 ~~~~G~l~ald~~tG~~lW~~ 310 (417)
-.++|.|..+|. .|+++|+.
T Consensus 92 L~ddGnlvl~~~-~~~~~W~S 111 (114)
T smart00108 92 LLDDGNLVIYDS-DGNFLWQS 111 (114)
T ss_pred EeCCCCEEEECC-CCCEEeCC
Confidence 456788888875 57899975
No 95
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=77.61 E-value=28 Score=32.59 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=58.6
Q ss_pred EEEEeccCCcEEEEECCCCccceEeeccccc---CCccee----eEEeee---eeEEEEEecCC-------Cceeeeeec
Q 039692 50 VVYFPSWNGYLYAVNAFNGALIWEQNLSKLT---GLSGTG----IVVNVT---VAVVVAVSRSN-------GELVWSTQI 112 (417)
Q Consensus 50 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~p~~----~v~~~~---v~~l~ald~~t-------G~~~W~~~~ 112 (417)
.+.-+++|..+.-.|.++||++-+.+.+... ..++.+ +..+.. -+.+..+|... -++.-+++.
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 5666678888999999999998777776432 122221 111111 16677777652 223444443
Q ss_pred CCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 113 DPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 113 ~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
++.......-.| .++.++.|.+ +|.|-.+|+++|++.=..
T Consensus 146 ~~skit~a~Wg~--l~~~ii~Ghe--------------~G~is~~da~~g~~~v~s 185 (327)
T KOG0643|consen 146 PDSKITSALWGP--LGETIIAGHE--------------DGSISIYDARTGKELVDS 185 (327)
T ss_pred Cccceeeeeecc--cCCEEEEecC--------------CCcEEEEEcccCceeeec
Confidence 322111111111 2555666555 699999999999877443
No 96
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=77.07 E-value=19 Score=29.00 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=15.5
Q ss_pred EcccceEEEEECCCCcEEEEee
Q 039692 290 VQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 290 ~~~~G~l~ald~~tG~~lW~~~ 311 (417)
-.++|.|..++. +|+++|+..
T Consensus 93 L~ddGnlvl~~~-~~~~~W~Sf 113 (116)
T cd00028 93 LLDDGNLVLYDS-DGNFLWQSF 113 (116)
T ss_pred EeCCCCEEEECC-CCCEEEcCC
Confidence 446788888875 488999764
No 97
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=74.92 E-value=16 Score=29.50 Aligned_cols=74 Identities=20% Similarity=0.417 Sum_probs=40.2
Q ss_pred eeeeEEEeCCceeeCcEEECCEEEEeccCCcEEEEECCCCccceEe-ecccccCCcceeeEEee-eeeEEEEEecCCCce
Q 039692 29 RLRWSFYAGKDISATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQ-NLSKLTGLSGTGIVVNV-TVAVVVAVSRSNGEL 106 (417)
Q Consensus 29 ~~~W~~~~~~~~~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~p~~~v~~~-~v~~l~ald~~tG~~ 106 (417)
+++|...-...+.++. +...+....+|.|..+|. .|+.+|+. ....... .++ ...- -.|.|+.+| .++++
T Consensus 3 tvvW~an~~~p~~~~s---~~~~L~l~~dGnLvl~~~-~~~~iWss~~t~~~~~-~~~--~~~L~~~GNlvl~d-~~~~~ 74 (114)
T PF01453_consen 3 TVVWVANRNSPLTSSS---GNYTLILQSDGNLVLYDS-NGSVIWSSNNTSGRGN-SGC--YLVLQDDGNLVLYD-SSGNV 74 (114)
T ss_dssp -------TTEEEEECE---TTEEEEEETTSEEEEEET-TTEEEEE--S-TTSS--SSE--EEEEETTSEEEEEE-TTSEE
T ss_pred cccccccccccccccc---ccccceECCCCeEEEEcC-CCCEEEEecccCCccc-cCe--EEEEeCCCCEEEEe-ecceE
Confidence 4567766553332211 445555566899999996 47889999 4333221 122 1111 139999999 68999
Q ss_pred eeee
Q 039692 107 VWST 110 (417)
Q Consensus 107 ~W~~ 110 (417)
+|+-
T Consensus 75 lW~S 78 (114)
T PF01453_consen 75 LWQS 78 (114)
T ss_dssp EEES
T ss_pred EEee
Confidence 9997
No 98
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=74.73 E-value=45 Score=32.77 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=42.4
Q ss_pred ccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccc
Q 039692 215 ISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSG 294 (417)
Q Consensus 215 v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G 294 (417)
+...+-++.+...|.+-|+.+-..... +..+..+...| .++||.++.|+
T Consensus 220 las~skDg~vrIWd~~~~~~~~~lsgH-----------------------------T~~VTCvrwGG--~gliySgS~Dr 268 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLGTCVRTLSGH-----------------------------TASVTCVRWGG--EGLIYSGSQDR 268 (480)
T ss_pred eecccCCCCEEEEEccCceEEEEeccC-----------------------------ccceEEEEEcC--CceEEecCCCc
Confidence 345566788888887777766433321 22233445555 58999999999
Q ss_pred eEEEEECCCCcEE
Q 039692 295 FAWAFDRDSGDII 307 (417)
Q Consensus 295 ~l~ald~~tG~~l 307 (417)
.+...++.+|+..
T Consensus 269 tIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 269 TIKVWRALDGKLC 281 (480)
T ss_pred eEEEEEccchhHH
Confidence 9999999998764
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=74.57 E-value=14 Score=35.06 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=52.7
Q ss_pred ccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccc
Q 039692 215 ISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSG 294 (417)
Q Consensus 215 v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G 294 (417)
+...+..+.++.||+=+|+++-.++..+... ..|+-+....+| +.|+.+..||
T Consensus 202 iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~------------------------~~~~~a~ftPds---~Fvl~gs~dg 254 (311)
T KOG1446|consen 202 ILLSTNASFIYLLDAFDGTVKSTFSGYPNAG------------------------NLPLSATFTPDS---KFVLSGSDDG 254 (311)
T ss_pred EEEEeCCCcEEEEEccCCcEeeeEeeccCCC------------------------CcceeEEECCCC---cEEEEecCCC
Confidence 3455667889999999999988887765431 234444455565 5788889999
Q ss_pred eEEEEECCCCcEEEEeec
Q 039692 295 FAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 295 ~l~ald~~tG~~lW~~~~ 312 (417)
++++.+.++|++.=....
T Consensus 255 ~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 255 TIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEEcCCCcEeeEecC
Confidence 999999999988766554
No 100
>PHA03098 kelch-like protein; Provisional
Probab=74.52 E-value=1.1e+02 Score=31.66 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=58.3
Q ss_pred CcEEECCEEEEeccC-------CcEEEEECCCCccceEeecccc-cCCcceeeEEee------------eeeEEEEEecC
Q 039692 43 TPAVANGVVYFPSWN-------GYLYAVNAFNGALIWEQNLSKL-TGLSGTGIVVNV------------TVAVVVAVSRS 102 (417)
Q Consensus 43 ~p~~~~g~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~-~~~~p~~~v~~~------------~v~~l~ald~~ 102 (417)
.-++.++.||+.+.. ..++++|..+. .|+.-..-. .......++.++ ....++.+|..
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCC
Confidence 345678888876531 36889998765 475432211 000011111111 12567888876
Q ss_pred CCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 103 NGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 103 tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
+. .|+.-.+ .+......+.++.++.+|+..+..... ..-..++.+|+.+. .|+.
T Consensus 367 ~~--~W~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~-------~~~~~v~~yd~~t~--~W~~ 420 (534)
T PHA03098 367 ES--KWREEPP-LIFPRYNPCVVNVNNLIYVIGGISKND-------ELLKTVECFSLNTN--KWSK 420 (534)
T ss_pred CC--ceeeCCC-cCcCCccceEEEECCEEEEECCcCCCC-------cccceEEEEeCCCC--eeee
Confidence 55 5875432 111112223356789999854421110 01257899999764 5874
No 101
>PRK04792 tolB translocation protein TolB; Provisional
Probab=73.09 E-value=1.1e+02 Score=31.03 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=50.5
Q ss_pred CcEEE-CC-EEEEec-c--CCcEEEEECCCCccceEeeccccc---CCccee--eEE-ee--eeeEEEEEecCCCceeee
Q 039692 43 TPAVA-NG-VVYFPS-W--NGYLYAVNAFNGALIWEQNLSKLT---GLSGTG--IVV-NV--TVAVVVAVSRSNGELVWS 109 (417)
Q Consensus 43 ~p~~~-~g-~v~v~~-~--~g~l~ald~~tG~~~W~~~~~~~~---~~~p~~--~v~-~~--~v~~l~ald~~tG~~~W~ 109 (417)
.|... +| +|++.+ . ...|+.+|.++|+..--....... ..+|-+ ++. .. --..||.+|.++|++. +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-R 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-E
Confidence 45544 33 454443 2 236999999888753222222111 122221 110 00 1146899998887642 2
Q ss_pred eecCCCCCcceeeceeEE-cC-eEEEEeCCccCccccCcccCCCceEEEEeCCCCcee
Q 039692 110 TQIDPRPRSQITMSGSVY-MG-AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 110 ~~~~~~~~~~~~~sp~v~-~~-~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~ 165 (417)
...... ....|... ++ .+++.+.... ...||.+|.++|+..
T Consensus 301 lt~~~~----~~~~p~wSpDG~~I~f~s~~~g-----------~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 301 ITRHRA----IDTEPSWHPDGKSLIFTSERGG-----------KPQIYRVNLASGKVS 343 (448)
T ss_pred CccCCC----CccceEECCCCCEEEEEECCCC-----------CceEEEEECCCCCEE
Confidence 211111 11223221 33 4555443211 247999999888753
No 102
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=72.88 E-value=12 Score=34.58 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=35.7
Q ss_pred eEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCcceeccc-ccCCeEEEEeccCCceeeeec
Q 039692 285 DVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAA-TDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 285 ~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~-~~~~~vy~~~~~~~~~~W~~~ 347 (417)
+.|++++.|+.+|++|.++|++.-..+.- ....+.-+. ...+.|+....++.-++|...
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcceeecCCCccEEEEecc
Confidence 44666668999999999999998877742 112221111 123455555555556666643
No 103
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=72.81 E-value=95 Score=30.06 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=24.4
Q ss_pred cEEECCEEEEecc--CCcEEEEECCCCccceEeecc
Q 039692 44 PAVANGVVYFPSW--NGYLYAVNAFNGALIWEQNLS 77 (417)
Q Consensus 44 p~~~~g~v~v~~~--~g~l~ald~~tG~~~W~~~~~ 77 (417)
.++.++.||+... ...++.+|.++.+..|+.-..
T Consensus 13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~ 48 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIAD 48 (346)
T ss_pred EEEECCEEEEEccccCCeeEEEECCCCCCCceECCC
Confidence 4577999998653 246889998666778986543
No 104
>PRK05137 tolB translocation protein TolB; Provisional
Probab=72.58 E-value=1.1e+02 Score=30.77 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=15.2
Q ss_pred eEEEEEcccc--eEEEEECCCCcEE
Q 039692 285 DVVVAVQKSG--FAWAFDRDSGDII 307 (417)
Q Consensus 285 ~~v~~~~~~G--~l~ald~~tG~~l 307 (417)
.++|..+.+| .+|.+|.++|+..
T Consensus 303 ~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 303 QIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred EEEEEECCCCCCeEEEEECCCCCeE
Confidence 4555554443 7999998877654
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=72.43 E-value=66 Score=32.40 Aligned_cols=70 Identities=11% Similarity=0.204 Sum_probs=46.5
Q ss_pred ccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceE--EEEecCCeeeeEEEEEcc
Q 039692 215 ISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPML--LTISTNGRFRDVVVAVQK 292 (417)
Q Consensus 215 v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v--~~~~~~G~~~~~v~~~~~ 292 (417)
++..+....+|.+|..++|+.=-.+..... .+.+ +.+..+ ++.|.+.+.
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e--------------------------~~~~e~FeVShd---~~fia~~G~ 323 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVE--------------------------EKSMERFEVSHD---SNFIAIAGN 323 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcc--------------------------cchhheeEecCC---CCeEEEccc
Confidence 455556678999999999886433332221 1111 111122 346777889
Q ss_pred cceEEEEECCCCcEEEEeecC
Q 039692 293 SGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 293 ~G~l~ald~~tG~~lW~~~~~ 313 (417)
.|.++.|.+.|++.+=+.++.
T Consensus 324 ~G~I~lLhakT~eli~s~Kie 344 (514)
T KOG2055|consen 324 NGHIHLLHAKTKELITSFKIE 344 (514)
T ss_pred CceEEeehhhhhhhhheeeec
Confidence 999999999999999888874
No 106
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=71.47 E-value=1.3e+02 Score=31.02 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=33.6
Q ss_pred EEEEEecCCCceeeeeecCC--CCCcceeeceeEEcCeEEEEeCCcc-CccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 95 VVVAVSRSNGELVWSTQIDP--RPRSQITMSGSVYMGAFYVGLSSLE-EALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 95 ~l~ald~~tG~~~W~~~~~~--~~~~~~~~sp~v~~~~v~v~~~~~~-~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.||.+|..+ .+|.+.... .+......+.+..++.+|+...... .. +-..|+.||..|++ |++..
T Consensus 89 dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~--------~~~~l~~~d~~t~~--W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYR--------NLNELHSLDLSTRT--WSLLS 155 (482)
T ss_pred eeEEeecCC--cccccccccCCCCCcccceeEEEECCeEEEEccccCCCC--------ChhheEeccCCCCc--EEEec
Confidence 388888655 778777421 1111122233456677665443210 00 01379999987664 55443
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.41 E-value=1.6e+02 Score=32.25 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=102.0
Q ss_pred EECCEEEEeccCCcEEEEECCCCcc---ceEeecccccCCcceeeEEee-------eeeEEEEEecCCCceeeeeecCCC
Q 039692 46 VANGVVYFPSWNGYLYAVNAFNGAL---IWEQNLSKLTGLSGTGIVVNV-------TVAVVVAVSRSNGELVWSTQIDPR 115 (417)
Q Consensus 46 ~~~g~v~v~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~p~~~v~~~-------~v~~l~ald~~tG~~~W~~~~~~~ 115 (417)
...+.+..++.++.+..+.-.+|+. +=++.++-.. +.+..+| -.-.|-+++..++...-...--..
T Consensus 64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred ecccceEEeeccceEEEeeCCCCCccceeeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccchheeecccCC
Confidence 3456777777888888777666653 3333333110 0011111 125666777777666555442211
Q ss_pred CCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeec
Q 039692 116 PRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDV 195 (417)
Q Consensus 116 ~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~ 195 (417)
+...+.-.| ++.+++.+.. +|.|+++|.++|.+.-.....+...... ...+. ..++..+
T Consensus 140 pVl~l~~~p---~~~fLAvss~-------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~----~s~i~-~~~aW~P 198 (933)
T KOG1274|consen 140 PVLQLSYDP---KGNFLAVSSC-------------DGKVQIWDLQDGILSKTLTGVDKDNEFI----LSRIC-TRLAWHP 198 (933)
T ss_pred ceeeeeEcC---CCCEEEEEec-------------CceEEEEEcccchhhhhcccCCcccccc----cccee-eeeeecC
Confidence 111122233 4555444443 7999999999998876655433221100 00011 1233333
Q ss_pred ccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEE
Q 039692 196 IRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLL 275 (417)
Q Consensus 196 ~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~ 275 (417)
+.+ ...+...++.|..+++++.+++......... +.-...
T Consensus 199 k~g---------------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s-------------------------s~~~~~ 238 (933)
T KOG1274|consen 199 KGG---------------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSS-------------------------SKFSDL 238 (933)
T ss_pred CCC---------------eEEeeccCCeEEEEccCCceeheeecccccc-------------------------cceEEE
Confidence 322 1223345688899999988888776655432 112222
Q ss_pred EEecCCeeeeEEEEEcccceEEEEECCC
Q 039692 276 TISTNGRFRDVVVAVQKSGFAWAFDRDS 303 (417)
Q Consensus 276 ~~~~~G~~~~~v~~~~~~G~l~ald~~t 303 (417)
....+| .+|.+++.+|.+...|.++
T Consensus 239 ~wsPnG---~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNG---KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCC---cEEeeeccCCcEEEEeccc
Confidence 333454 5788888888888888875
No 108
>PRK04922 tolB translocation protein TolB; Provisional
Probab=71.30 E-value=1.2e+02 Score=30.57 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=15.4
Q ss_pred eEEEEEcccc--eEEEEECCCCcEE
Q 039692 285 DVVVAVQKSG--FAWAFDRDSGDII 307 (417)
Q Consensus 285 ~~v~~~~~~G--~l~ald~~tG~~l 307 (417)
.++|..+.+| .+|.+|.++|+..
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeE
Confidence 4555555544 5999999888754
No 109
>PHA02790 Kelch-like protein; Provisional
Probab=71.10 E-value=78 Score=32.51 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=60.6
Q ss_pred CcEEECCEEEEecc----CCcEEEEECCCCccceEeecccccC-CcceeeEEee--ee--eEEEEEecCCCceeeeeecC
Q 039692 43 TPAVANGVVYFPSW----NGYLYAVNAFNGALIWEQNLSKLTG-LSGTGIVVNV--TV--AVVVAVSRSNGELVWSTQID 113 (417)
Q Consensus 43 ~p~~~~g~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~-~~p~~~v~~~--~v--~~l~ald~~tG~~~W~~~~~ 113 (417)
..++.+|+||+.+. ...+.++|+++. .|+...+-... ...+.++.++ ++ |...++|.++. .|+.-.+
T Consensus 357 ~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~ydp~~~--~W~~~~~ 432 (480)
T PHA02790 357 AVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYCESSN--TWTLIDD 432 (480)
T ss_pred EEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECCceEEecCCCC--cEeEcCC
Confidence 44567999998753 245788998654 79875432111 1112123333 22 55677887654 7885432
Q ss_pred CCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceece
Q 039692 114 PRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167 (417)
Q Consensus 114 ~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~ 167 (417)
........+-++.+++||+-...... +....+.++|++++ .|+
T Consensus 433 -m~~~r~~~~~~v~~~~IYviGG~~~~--------~~~~~ve~Yd~~~~--~W~ 475 (480)
T PHA02790 433 -PIYPRDNPELIIVDNKLLLIGGFYRG--------SYIDTIEVYNNRTY--SWN 475 (480)
T ss_pred -CCCCccccEEEEECCEEEEECCcCCC--------cccceEEEEECCCC--eEE
Confidence 22122334456789999985532110 01246889998744 454
No 110
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.83 E-value=1.6e+02 Score=31.80 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=24.9
Q ss_pred EEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEee
Q 039692 275 LTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 275 ~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~ 311 (417)
+....+| +.|.+.+-||.+.-+|.+.+..+-..+
T Consensus 526 vsfrPdG---~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 526 VSFRPDG---KELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred EEEcCCC---CeEEEEEecceEEEEEhhhceeecccc
Confidence 3444555 578889999999999999887774443
No 111
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=70.38 E-value=1.4e+02 Score=30.83 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=96.7
Q ss_pred CCEEEE-eccCCcEEEEECCCCccceEeecccc-------cCCccee--eEEeeeeeEEEEEecCCCceeeeeecCCCCC
Q 039692 48 NGVVYF-PSWNGYLYAVNAFNGALIWEQNLSKL-------TGLSGTG--IVVNVTVAVVVAVSRSNGELVWSTQIDPRPR 117 (417)
Q Consensus 48 ~g~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~-------~~~~p~~--~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~ 117 (417)
||..|+ .+.||+++.+|-+||+.+=++.-... +..+|-. ++.-.........|..+.++.=+..++....
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 444444 45799999999999999888774321 1122210 0111122444555556666655555443211
Q ss_pred cceeeceeEE-cCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecc
Q 039692 118 SQITMSGSVY-MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVI 196 (417)
Q Consensus 118 ~~~~~sp~v~-~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~ 196 (417)
....+ ++. +++++.-+- +|.|--|++.+++++-.+.-..... ...++.+
T Consensus 281 dqqvG--~lWqkd~lItVSl--------------~G~in~ln~~d~~~~~~i~GHnK~I-------------TaLtv~~- 330 (603)
T KOG0318|consen 281 DQQVG--CLWQKDHLITVSL--------------SGTINYLNPSDPSVLKVISGHNKSI-------------TALTVSP- 330 (603)
T ss_pred ceEEE--EEEeCCeEEEEEc--------------CcEEEEecccCCChhheecccccce-------------eEEEEcC-
Confidence 11111 122 556655444 4889999998888655443311100 0112211
Q ss_pred cCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEE
Q 039692 197 RRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLT 276 (417)
Q Consensus 197 ~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~ 276 (417)
....+|.++++|.+.-.|..+|+--=... ..+ +-++..
T Consensus 331 --------------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g-~~h---------------------------~nqI~~ 368 (603)
T KOG0318|consen 331 --------------DGKTIYSGSYDGHINSWDSGSGTSDRLAG-KGH---------------------------TNQIKG 368 (603)
T ss_pred --------------CCCEEEeeccCceEEEEecCCcccccccc-ccc---------------------------cceEEE
Confidence 12346778888998888887775421110 111 122222
Q ss_pred EecCCeeeeEEEEEcccceEEEEECCCC
Q 039692 277 ISTNGRFRDVVVAVQKSGFAWAFDRDSG 304 (417)
Q Consensus 277 ~~~~G~~~~~v~~~~~~G~l~ald~~tG 304 (417)
+.... .+.++..+.|..|..++.+.+
T Consensus 369 ~~~~~--~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 369 MAASE--SGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred EeecC--CCcEEEEecCCeEEEEecccC
Confidence 22221 256777888889999987653
No 112
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=70.32 E-value=31 Score=27.67 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=48.5
Q ss_pred CCcEEEEECCCCccceEeecccccCCcceeeEEeeeeeEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeC
Q 039692 57 NGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLS 136 (417)
Q Consensus 57 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~ 136 (417)
++.+.-++...+..+|......+ ...++. ..-...|.|+.+|. +|.++|+-.... . . ...+.+-..
T Consensus 30 dgnlv~~~~~~~~~vW~snt~~~-~~~~~~-l~l~~dGnLvl~~~-~g~~vW~S~~~~-~------~----~~~~~~L~d 95 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANRDNP-SGSSCT-LTLQSDGNLVIYDG-SGTVVWSSNTTR-V------N----GNYVLVLLD 95 (116)
T ss_pred eEEEEEEeCCCCeEEEECCCCCC-CCCCEE-EEEecCCCeEEEcC-CCcEEEEecccC-C------C----CceEEEEeC
Confidence 55666666544678998877643 112221 11112378888884 689999877542 0 0 111111111
Q ss_pred CccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 137 SLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 137 ~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
+|.|.-++.. |+++|+...
T Consensus 96 --------------dGnlvl~~~~-~~~~W~Sf~ 114 (116)
T cd00028 96 --------------DGNLVLYDSD-GNFLWQSFD 114 (116)
T ss_pred --------------CCCEEEECCC-CCEEEcCCC
Confidence 5788888875 899998543
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=70.23 E-value=1e+02 Score=29.41 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=57.1
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccccC-C--cc-eeeEEeeeeeEEEEEecCCCceeeeeecCCCCCcceeec
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG-L--SG-TGIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMS 123 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~--~p-~~~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~s 123 (417)
.+.|.+++.+|.|..+|...-+++=+++...++- + .+ ..++..+..+.|.-+|+.+|+..---. ..+...-+.-.
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igt-h~~~i~ci~~~ 103 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGT-HDEGIRCIEYS 103 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeecc-CCCceEEEEee
Confidence 5778899999999999987666666666554321 1 01 012334456999999998887642221 11111001111
Q ss_pred eeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCC
Q 039692 124 GSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161 (417)
Q Consensus 124 p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~t 161 (417)
...+.|+.|+. +..|-..|++.
T Consensus 104 --~~~~~vIsgsW--------------D~~ik~wD~R~ 125 (323)
T KOG1036|consen 104 --YEVGCVISGSW--------------DKTIKFWDPRN 125 (323)
T ss_pred --ccCCeEEEccc--------------CccEEEEeccc
Confidence 23566776665 57888888764
No 114
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=69.91 E-value=12 Score=37.69 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=45.2
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
..|..+|+.++++.|...++......+...|.+.++.+|++....+.. ...||-+|+.|++-
T Consensus 367 ~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~---------~~~IY~iDp~TatA 428 (435)
T PF14298_consen 367 KKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGS---------DPYIYKIDPATATA 428 (435)
T ss_pred ceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCC---------ceeEEEEcCccccc
Confidence 778889999999999988775422334557888899999987532110 14799999988753
No 115
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=69.79 E-value=1.1e+02 Score=29.48 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=65.1
Q ss_pred eEEEEEecCCCceeeeee-c-----CCC---CCcceeece---eEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCC
Q 039692 94 AVVVAVSRSNGELVWSTQ-I-----DPR---PRSQITMSG---SVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~-~-----~~~---~~~~~~~sp---~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~t 161 (417)
..|||=|..+|++-+--. + +.. +.-+..-+| .-.+++|||--...+.....+....-.|.|-.+|..
T Consensus 152 ~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~- 230 (336)
T TIGR03118 152 DYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN- 230 (336)
T ss_pred ceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-
Confidence 799999999998864322 1 110 000111122 246888988554332211112223345789999985
Q ss_pred CceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEec
Q 039692 162 GRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKP 239 (417)
Q Consensus 162 G~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~ 239 (417)
|+.+=++.....-. +-|+- ++-+..= ++ .....+..+-.++.|-|+|+.+|+.+=+..
T Consensus 231 G~l~~r~as~g~LN---------aPWG~--a~APa~F-------G~--~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 231 GQLLRRVASSGRLN---------APWGL--AIAPESF-------GS--LSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CcEEEEeccCCccc---------CCcee--eeChhhh-------CC--CCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 99998775432111 22321 1111000 00 011223334457999999999999875443
No 116
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.73 E-value=1.2e+02 Score=30.10 Aligned_cols=65 Identities=6% Similarity=0.003 Sum_probs=34.1
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCcc-CccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLE-EALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~-~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.+|+.+|++||+..=.++.. .-.+.+..+|. +..++.-.+++. ..+ +.+|.-+|. +|.-.|....
T Consensus 168 ~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~--dp~li~fCHEGpw~~V--------d~RiW~i~~-dg~~~~~v~~ 233 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDT-DWLGHVQFSPT--DPTLIMFCHEGPWDLV--------DQRIWTINT-DGSNVKKVHR 233 (386)
T ss_dssp EEEEEEETTT--EEEEEEES-S-EEEEEEETT--EEEEEEEEE-S-TTTS--------S-SEEEEET-TS---EESS-
T ss_pred ceEEEEECCCCceeEEEecC-ccccCcccCCC--CCCEEEEeccCCccee--------ceEEEEEEc-CCCcceeeec
Confidence 99999999999764333321 22233555664 555555544432 222 568999996 4888887654
No 117
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=69.29 E-value=1.1e+02 Score=29.43 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=33.6
Q ss_pred eeEEEEEccc-c-eEEEEECCCCcEEEEeecCCCCCCCcceecccc---cCCeEEEEeccCC
Q 039692 284 RDVVVAVQKS-G-FAWAFDRDSGDIIWFKLAGPGGREGGGVWGAAT---DGRRVYTNIVNND 340 (417)
Q Consensus 284 ~~~v~~~~~~-G-~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~---~~~~vy~~~~~~~ 340 (417)
+..|++.... | .+.+++++ |+++=+.+++.... ..+++ +.++||++....+
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~-----t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP-----TNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC-----ccceEeCCCcCEEEEEecCCC
Confidence 3457744433 3 89999998 99999999862111 12333 3589999877654
No 118
>PRK02889 tolB translocation protein TolB; Provisional
Probab=69.09 E-value=1.3e+02 Score=30.21 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=11.4
Q ss_pred eEEEEECCCCceEE
Q 039692 223 SIVALDIDSGRIAW 236 (417)
Q Consensus 223 ~l~ald~~tG~~~W 236 (417)
.|+.+|.++|+.+.
T Consensus 353 ~I~v~d~~~g~~~~ 366 (427)
T PRK02889 353 KLYVQDLATGQVTA 366 (427)
T ss_pred EEEEEECCCCCeEE
Confidence 68899998888764
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=69.00 E-value=1.1e+02 Score=29.25 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred eeEEEEEcc-cceEEEEECC--CCcEEEEeecC--CCCCCCcc---eecccccCCeEEEEeccCC-ceeeee
Q 039692 284 RDVVVAVQK-SGFAWAFDRD--SGDIIWFKLAG--PGGREGGG---VWGAATDGRRVYTNIVNND-RIIWST 346 (417)
Q Consensus 284 ~~~v~~~~~-~G~l~ald~~--tG~~lW~~~~~--~~~~~g~~---~~~~~~~~~~vy~~~~~~~-~~~W~~ 346 (417)
++.+|+.+. ++.+.++|.+ +|+........ |....+.. .....-+++.+|+.+...+ =.+|..
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 357887765 7888888876 56654433332 21111111 1112346778898865433 233544
No 120
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=68.67 E-value=90 Score=31.61 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=45.6
Q ss_pred EEEEeccCCcEEEEECCCCccceEeecccccC---Ccce---eeEEeeeeeEEEEEecCCCceeeeee
Q 039692 50 VVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG---LSGT---GIVVNVTVAVVVAVSRSNGELVWSTQ 111 (417)
Q Consensus 50 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~p~---~~v~~~~v~~l~ald~~tG~~~W~~~ 111 (417)
.+.-++.|..|.-.|.+||+.+=++.++.... ..|. .++.++..++|..+|..+|+++=.+.
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 44455678999999999999999999885422 1221 22444456999999999999876665
No 121
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=68.55 E-value=67 Score=30.54 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=42.6
Q ss_pred eEEEEEecCCCceeeeeecCCCCC--cceeeceeEEc-------CeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPR--SQITMSGSVYM-------GAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~--~~~~~sp~v~~-------~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
-+|++||++|++++=++.++.... .......+|.. +.+|+.-.+ ...|..+|.++|+-
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~-------------~~glIV~dl~~~~s 100 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG-------------GPGLIVYDLATGKS 100 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT-------------TCEEEEEETTTTEE
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC-------------cCcEEEEEccCCcE
Confidence 368999999999999999876532 12233344443 468887764 46899999997765
Q ss_pred eceeee
Q 039692 165 IWQTYM 170 (417)
Q Consensus 165 ~W~~~~ 170 (417)
|++..
T Consensus 101 -~Rv~~ 105 (287)
T PF03022_consen 101 -WRVLH 105 (287)
T ss_dssp -EEEET
T ss_pred -EEEec
Confidence 87765
No 122
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=68.13 E-value=1e+02 Score=28.66 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceE
Q 039692 217 SDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFA 296 (417)
Q Consensus 217 ~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l 296 (417)
..+.+..+...+.++= ++=+.....+..|..+|. | +.+ +.+|+.++.|+..
T Consensus 232 t~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~----------------F---------S~d---g~YlvTassd~~~ 282 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCA----------------F---------SAD---GEYLVTASSDHTA 282 (311)
T ss_pred eecCCceEEEEecCCc-eeeEEEeecCCceEEeee----------------e---------ccC---ccEEEecCCCCce
Confidence 4455666777776554 444555555555644431 1 112 4578888888888
Q ss_pred EEEECCCCcEEEEee
Q 039692 297 WAFDRDSGDIIWFKL 311 (417)
Q Consensus 297 ~ald~~tG~~lW~~~ 311 (417)
..-|..+||++-+..
T Consensus 283 rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQ 297 (311)
T ss_pred eecccccCceeeecC
Confidence 888889998665544
No 123
>PLN02193 nitrile-specifier protein
Probab=67.51 E-value=1.5e+02 Score=30.30 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=58.2
Q ss_pred EEECCEEEEeccC--------CcEEEEECCCCccceEeeccc-cc-C---CcceeeEEee--e----------eeEEEEE
Q 039692 45 AVANGVVYFPSWN--------GYLYAVNAFNGALIWEQNLSK-LT-G---LSGTGIVVNV--T----------VAVVVAV 99 (417)
Q Consensus 45 ~~~~g~v~v~~~~--------g~l~ald~~tG~~~W~~~~~~-~~-~---~~p~~~v~~~--~----------v~~l~al 99 (417)
++.++.||+.... ..++++|+++ ..|+..... .. . ...+.++.++ + ...+++|
T Consensus 172 ~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~y 249 (470)
T PLN02193 172 AQVGNKIYSFGGEFTPNQPIDKHLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSF 249 (470)
T ss_pred EEECCEEEEECCcCCCCCCeeCcEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEE
Confidence 5668888876431 3589999875 459853221 00 0 0011111121 1 1578999
Q ss_pred ecCCCceeeeeecCC--CCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 100 SRSNGELVWSTQIDP--RPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 100 d~~tG~~~W~~~~~~--~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
|.++. .|+.-... .+......+.++.++++|+........ ....++++|+.+ ..|+.-
T Consensus 250 D~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~--------~~~~~~~yd~~t--~~W~~~ 309 (470)
T PLN02193 250 DTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA--------RLKTLDSYNIVD--KKWFHC 309 (470)
T ss_pred ECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC--------CcceEEEEECCC--CEEEeC
Confidence 98764 58764221 011112223345788888754421110 124689999975 458743
No 124
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=66.76 E-value=1.3e+02 Score=29.40 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=40.6
Q ss_pred eeEEEEEcccceEEEEECCCCcEEE--EeecCCCCCCCccee-ccccc--CCeEEEEeccCCceeeeecCCCCCCCccce
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIW--FKLAGPGGREGGGVW-GAATD--GRRVYTNIVNNDRIIWSTADPSNETAHGPV 358 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW--~~~~~~~~~~g~~~~-~~~~~--~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~ 358 (417)
+++++.++++|.++--|-++|-.-= +....|+........ ...+| +-++.....+..-..|+.+... ...+.|+
T Consensus 371 D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a-T~EthPl 449 (460)
T KOG0285|consen 371 DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA-TEETHPL 449 (460)
T ss_pred CceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc-CcccCCc
Confidence 6788889999999988888884322 223334433322111 11222 3345444444455667766542 4455554
No 125
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=65.88 E-value=1.3e+02 Score=28.86 Aligned_cols=127 Identities=11% Similarity=0.052 Sum_probs=63.0
Q ss_pred eeeeEEEe--CCce-eeCcEEECCEEEEeccC------CcEEEEECCCCcc--ceEeecccccC-CcceeeEEee--e--
Q 039692 29 RLRWSFYA--GKDI-SATPAVANGVVYFPSWN------GYLYAVNAFNGAL--IWEQNLSKLTG-LSGTGIVVNV--T-- 92 (417)
Q Consensus 29 ~~~W~~~~--~~~~-~~~p~~~~g~v~v~~~~------g~l~ald~~tG~~--~W~~~~~~~~~-~~p~~~v~~~--~-- 92 (417)
+..|+... +... ....++.++.||+.... ..++++|..+.+- .|+...+-+.. ...+.++.++ +
T Consensus 50 ~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~ 129 (323)
T TIGR03548 50 NLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVG 129 (323)
T ss_pred ceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEE
Confidence 44676533 2222 23345668888876531 4688999876652 45432221110 1111112222 1
Q ss_pred --------eeEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 93 --------VAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 93 --------v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
...++++|.++. .|+.-.+-.........-++.++.||+....... ....++++|+++.
T Consensus 130 GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~---------~~~~~~~yd~~~~-- 196 (323)
T TIGR03548 130 GGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI---------AYTDGYKYSPKKN-- 196 (323)
T ss_pred eCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc---------cccceEEEecCCC--
Confidence 157899998754 5876421110011112224678898885542110 0124679999764
Q ss_pred ecee
Q 039692 165 IWQT 168 (417)
Q Consensus 165 ~W~~ 168 (417)
.|+.
T Consensus 197 ~W~~ 200 (323)
T TIGR03548 197 QWQK 200 (323)
T ss_pred eeEE
Confidence 5864
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.50 E-value=52 Score=32.85 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=45.0
Q ss_pred ccCCCCCCeEEEEECC---CCceEEEecCCCC-cceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEE
Q 039692 215 ISSDIYANSIVALDID---SGRIAWAKPLGGY-DIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAV 290 (417)
Q Consensus 215 v~~~~~~~~l~ald~~---tG~~~W~~~~~~~-~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~ 290 (417)
+..+++++.+...|.+ .--..|++...-. ..|. -......+++
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~---------------------------------~~se~~f~~~ 348 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD---------------------------------PHSENSFFVS 348 (463)
T ss_pred EEeccccceEEeeeccCccccCceEEeccceEEEEec---------------------------------CCCceeEEEe
Confidence 4466788888888877 4556777765421 1121 0113457778
Q ss_pred cccceEEEEECCC-CcEEEEeec
Q 039692 291 QKSGFAWAFDRDS-GDIIWFKLA 312 (417)
Q Consensus 291 ~~~G~l~ald~~t-G~~lW~~~~ 312 (417)
+.||.||-+|+.+ |+.+|+.+.
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~A 371 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKA 371 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEe
Confidence 9999999999986 799999986
No 127
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=65.44 E-value=53 Score=32.34 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=69.9
Q ss_pred ccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccc
Q 039692 215 ISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSG 294 (417)
Q Consensus 215 v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G 294 (417)
+..++.+..+...|..|-++.- ...++..|-.. +....|| +.|..++.+|
T Consensus 130 l~tGsGD~TvR~WD~~TeTp~~--t~KgH~~WVlc-------------------------vawsPDg---k~iASG~~dg 179 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLDTETPLF--TCKGHKNWVLC-------------------------VAWSPDG---KKIASGSKDG 179 (480)
T ss_pred EEecCCCceEEeeccCCCCcce--eecCCccEEEE-------------------------EEECCCc---chhhccccCC
Confidence 3455666778888888777764 33345555221 2233454 4778889999
Q ss_pred eEEEEECCCCcEEEEeecCCCCCCCcceeccc--ccCCeEEEEeccC-CceeeeecCCC----CCCCcccee----eeCC
Q 039692 295 FAWAFDRDSGDIIWFKLAGPGGREGGGVWGAA--TDGRRVYTNIVNN-DRIIWSTADPS----NETAHGPVT----VVNG 363 (417)
Q Consensus 295 ~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~--~~~~~vy~~~~~~-~~~~W~~~~~~----~~~~~~p~~----~~~~ 363 (417)
.+.+.|+++|+.+=+.-.+.....-...|.|. .-+.+.++...++ .-.+|...... ....+.|+. -.++
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG 259 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence 99999999997753332211000001112111 1122333333333 35667665421 122344554 2368
Q ss_pred eEEeccCCCC
Q 039692 364 VLFAGSVSAN 373 (417)
Q Consensus 364 ~v~~~~~~g~ 373 (417)
++|.|+.++.
T Consensus 260 liySgS~Drt 269 (480)
T KOG0271|consen 260 LIYSGSQDRT 269 (480)
T ss_pred eEEecCCCce
Confidence 9999999887
No 128
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=65.29 E-value=1.8e+02 Score=30.37 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=140.5
Q ss_pred CCEEEE--eccCCcEEEEECCCCccceEeecccccC-CcceeeEEeee---e----eEEEEEecCCCceeeeeecCCCCC
Q 039692 48 NGVVYF--PSWNGYLYAVNAFNGALIWEQNLSKLTG-LSGTGIVVNVT---V----AVVVAVSRSNGELVWSTQIDPRPR 117 (417)
Q Consensus 48 ~g~v~v--~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~p~~~v~~~~---v----~~l~ald~~tG~~~W~~~~~~~~~ 117 (417)
+|.-.+ +...=.|.++|..+=.+..++.++.... ..+ +.+.+ + .+-+-|.++-|. -.+..++....
T Consensus 62 DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei---LsDD~SK~v~L~~DR~IefHak~G~-hy~~RIP~~GR 137 (703)
T KOG2321|consen 62 DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI---LSDDYSKSVFLQNDRTIEFHAKYGR-HYRTRIPKFGR 137 (703)
T ss_pred CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE---eccchhhheEeecCceeeehhhcCe-eeeeecCcCCc
Confidence 454333 3355679999999999999998885422 111 22221 0 333333333332 12222221110
Q ss_pred cceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeeccc
Q 039692 118 SQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIR 197 (417)
Q Consensus 118 ~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~ 197 (417)
......| .=.+|++.++ ..||.|+.+-|+-+=-+.... +.+|. ..+.+.
T Consensus 138 Dm~y~~~---scDly~~gsg--------------~evYRlNLEqGrfL~P~~~~~-----------~~lN~--v~in~~- 186 (703)
T KOG2321|consen 138 DMKYHKP---SCDLYLVGSG--------------SEVYRLNLEQGRFLNPFETDS-----------GELNV--VSINEE- 186 (703)
T ss_pred cccccCC---CccEEEeecC--------------cceEEEEcccccccccccccc-----------cccee--eeecCc-
Confidence 0111112 2224554442 579999998887664444321 11221 122222
Q ss_pred CcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEE
Q 039692 198 RQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTI 277 (417)
Q Consensus 198 ~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~ 277 (417)
++.+..++.++.|-++|+.+-...-......... + ++ ...+.|.+..+
T Consensus 187 --------------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--------s------~p----g~~~~~svTal 234 (703)
T KOG2321|consen 187 --------------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--------S------HP----GGDAAPSVTAL 234 (703)
T ss_pred --------------cceEEecccCceEEEecchhhhhheeeecccccC--------C------Cc----cccccCcceEE
Confidence 2234456678889999998877766655543310 0 00 11134455555
Q ss_pred ecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeeecCCCC------
Q 039692 278 STNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTADPSN------ 351 (417)
Q Consensus 278 ~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~~------ 351 (417)
..+.. +-.+-+++..|.++..|+.+-+++-..+.+-....-...|...-..+.|+..|- .--.+|.......
T Consensus 235 ~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk-~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 235 KFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK-RILKIWDECTGKPMASIEP 312 (703)
T ss_pred EecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch-HHhhhcccccCCceeeccc
Confidence 44432 457888999999999999999998888754100000111222212244444432 2233455432210
Q ss_pred ---CCCccceeeeCCeEEeccCCCC---------C-Ceec--------------ccccccCCeEEEec
Q 039692 352 ---ETAHGPVTVVNGVLFAGSVSAN---------G-STVY--------------GGVPASYGCIYLGN 392 (417)
Q Consensus 352 ---~~~~~p~~~~~~~v~~~~~~g~---------g-~~~~--------------~sp~~~~g~lyv~~ 392 (417)
-..-.++ ...|++|++.+++. | ..-| ..+.|.|+.-||+.
T Consensus 313 t~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfLdnlTEElEE~~~~TVYDnYkFvTk 379 (703)
T KOG2321|consen 313 TSDLNDFCFV-PGSGMFFTANESSKMHTYYIPSLGPAPRWCSFLDNLTEELEENPETTVYDNYKFVTK 379 (703)
T ss_pred cCCcCceeee-cCCceEEEecCCCcceeEEccccCCCchhhhHHHhHHHHHhcCCccccccceeeeeH
Confidence 0011232 56688898888766 2 1222 35678899888853
No 129
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.00 E-value=1.3e+02 Score=28.70 Aligned_cols=62 Identities=5% Similarity=0.030 Sum_probs=34.5
Q ss_pred eeEEEEEcc-cceEEEEECCC--CcEEEEeecCCCCCCCcceecccccCCeEEEEeccCC-ceeeeec
Q 039692 284 RDVVVAVQK-SGFAWAFDRDS--GDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNND-RIIWSTA 347 (417)
Q Consensus 284 ~~~v~~~~~-~G~l~ald~~t--G~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~-~~~W~~~ 347 (417)
++.+|++.+ ++.+.+++.+. ++.........+ .....+.+..+++.+|+.+..++ -.+|+.+
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 357888754 56787777643 343333333211 11222334457889999886444 4566654
No 130
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=64.71 E-value=2.6e+02 Score=32.02 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=31.4
Q ss_pred EEEE-cccceEEEEECCCCcEEEEeecCCCCCC-C-----c--ceecccc-cCCeEEEEeccCC
Q 039692 287 VVAV-QKSGFAWAFDRDSGDIIWFKLAGPGGRE-G-----G--GVWGAAT-DGRRVYTNIVNND 340 (417)
Q Consensus 287 v~~~-~~~G~l~ald~~tG~~lW~~~~~~~~~~-g-----~--~~~~~~~-~~~~vy~~~~~~~ 340 (417)
||++ ..++++..+|.++|++......+..... | . .-.++++ .++++|+.+..++
T Consensus 817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 5555 5678999999999887755443211000 0 0 1112333 3567999887665
No 131
>PRK03629 tolB translocation protein TolB; Provisional
Probab=64.11 E-value=1.7e+02 Score=29.54 Aligned_cols=23 Identities=9% Similarity=0.266 Sum_probs=15.1
Q ss_pred eEEEEEcccc--eEEEEECCCCcEE
Q 039692 285 DVVVAVQKSG--FAWAFDRDSGDII 307 (417)
Q Consensus 285 ~~v~~~~~~G--~l~ald~~tG~~l 307 (417)
.++|....+| .+|.+|.++|+..
T Consensus 300 ~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 300 NLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred EEEEEeCCCCCceEEEEECCCCCeE
Confidence 3455554433 7999999888654
No 132
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=62.56 E-value=78 Score=25.21 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=30.3
Q ss_pred cccceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeee
Q 039692 291 QKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWST 346 (417)
Q Consensus 291 ~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~ 346 (417)
..+|.|+..|. +|+.+|+..... .. ........+++.+.+.+. .++++|+.
T Consensus 61 ~~dGnLvl~~~-~g~~vW~S~t~~--~~-~~~~~~L~ddGnlvl~~~-~~~~~W~S 111 (114)
T smart00108 61 QSDGNLVLYDG-DGRVVWSSNTTG--AN-GNYVLVLLDDGNLVIYDS-DGNFLWQS 111 (114)
T ss_pred eCCCCEEEEeC-CCCEEEEecccC--CC-CceEEEEeCCCCEEEECC-CCCEEeCC
Confidence 46888888885 489999987531 11 111122345566655544 45788974
No 133
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=62.54 E-value=2.8e+02 Score=31.72 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=37.7
Q ss_pred CCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEE-cccceEE
Q 039692 219 IYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAV-QKSGFAW 297 (417)
Q Consensus 219 ~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~-~~~G~l~ 297 (417)
..++.|..+|+++|++......+... +. . +......+ ..|.-..+..+| + +|++ +.++.+.
T Consensus 822 s~N~rIrviD~~tg~v~tiaG~G~~G-~~-d-----------G~~~~a~l-~~P~GIavd~dG---~-lyVaDt~Nn~Ir 883 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVTTLAGTGKAG-FK-D-----------GKALKAQL-SEPAGLALGENG---R-LFVADTNNSLIR 883 (1057)
T ss_pred CCCCEEEEEECCCCeEEEEeccCCcC-CC-C-----------Cccccccc-CCceEEEEeCCC---C-EEEEECCCCEEE
Confidence 45678999999888877544322110 00 0 00000001 234333333343 3 5555 5678999
Q ss_pred EEECCCCcEE
Q 039692 298 AFDRDSGDII 307 (417)
Q Consensus 298 ald~~tG~~l 307 (417)
.+|+++++..
T Consensus 884 vid~~~~~~~ 893 (1057)
T PLN02919 884 YLDLNKGEAA 893 (1057)
T ss_pred EEECCCCccc
Confidence 9999998753
No 134
>PRK04922 tolB translocation protein TolB; Provisional
Probab=62.28 E-value=1.8e+02 Score=29.28 Aligned_cols=57 Identities=9% Similarity=0.020 Sum_probs=30.1
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
..|+.+|.++|+..-....... ......+| .+..+++..... .+..||.+|.++|+.
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~-~~~~~~Sp--DG~~l~~~~s~~-----------g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGI-NGAPSFSP--DGRRLALTLSRD-----------GNPEIYVMDLGSRQL 284 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCC-ccCceECC--CCCEEEEEEeCC-----------CCceEEEEECCCCCe
Confidence 4688888888876433222211 11122233 233465543321 024799999988864
No 135
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=61.82 E-value=85 Score=31.66 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=53.4
Q ss_pred cccceeeeEEEeCCceeeCcEEE----CCEEEEeccCCcEEEEECCCCccceEeecccccC-Ccceee--EEee-----e
Q 039692 25 VRNLRLRWSFYAGKDISATPAVA----NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTG-LSGTGI--VVNV-----T 92 (417)
Q Consensus 25 ~~~~~~~W~~~~~~~~~~~p~~~----~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~p~~~--v~~~-----~ 92 (417)
.+...+-|++.++..+..--++. ...|++-. ...|++|+. +|+++|.++++.... ..+-.+ .... +
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~l 303 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNL 303 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEE
Confidence 45678899999998653322222 12344444 458999996 899999999975321 111111 1111 1
Q ss_pred -e----eEEEEEecCCCceeeeeecCC
Q 039692 93 -V----AVVVAVSRSNGELVWSTQIDP 114 (417)
Q Consensus 93 -v----~~l~ald~~tG~~~W~~~~~~ 114 (417)
+ +.|..+. +.+++|..+++.
T Consensus 304 lV~t~t~~LlVy~--d~~L~WsA~l~~ 328 (418)
T PF14727_consen 304 LVGTHTGTLLVYE--DTTLVWSAQLPH 328 (418)
T ss_pred EEEecCCeEEEEe--CCeEEEecCCCC
Confidence 1 7777774 789999999754
No 136
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=61.54 E-value=41 Score=31.99 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=42.4
Q ss_pred CeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCe----eeeEEEEEcc-cceE
Q 039692 222 NSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGR----FRDVVVAVQK-SGFA 296 (417)
Q Consensus 222 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~----~~~~v~~~~~-~G~l 296 (417)
-+|+++|.+|++++=++..+.... ...-.+.++.++.+ .+..+|+++. .+.|
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~-----------------------~~~s~lndl~VD~~~~~~~~~~aYItD~~~~gl 90 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIA-----------------------PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGL 90 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS------------------------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEE
T ss_pred cEEEEEECCCCcEEEEEECChHHc-----------------------ccccccceEEEEccCCCCcceEEEEeCCCcCcE
Confidence 589999999999998888875421 01223334433321 1367888854 3689
Q ss_pred EEEECCCCcEEEEeec
Q 039692 297 WAFDRDSGDIIWFKLA 312 (417)
Q Consensus 297 ~ald~~tG~~lW~~~~ 312 (417)
.++|..+|+- |+...
T Consensus 91 IV~dl~~~~s-~Rv~~ 105 (287)
T PF03022_consen 91 IVYDLATGKS-WRVLH 105 (287)
T ss_dssp EEEETTTTEE-EEEET
T ss_pred EEEEccCCcE-EEEec
Confidence 9999999876 66654
No 137
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=61.42 E-value=1.3e+02 Score=29.04 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=42.4
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcc--eeecee---EEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceece
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQ--ITMSGS---VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~--~~~sp~---v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~ 167 (417)
|.+-.||. +|+.+-++.-.+....+ +..+|. -..+.++||.-+ ||+|-++|+.+|+-+=+
T Consensus 222 G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFG-------------DG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 222 GYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFG-------------DGTINAYDPQSGAQLGQ 286 (336)
T ss_pred ceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecC-------------CceeEEecCCCCceeee
Confidence 78889994 79998887644332222 333443 236789998887 89999999999987743
No 138
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=60.68 E-value=2e+02 Score=29.36 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=55.6
Q ss_pred eeCcEEECCEEEEeccCCcEEEEECCCCccceEeecccc---cCCccee--eEE-eee------eeEEEEEecCCCceee
Q 039692 41 SATPAVANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKL---TGLSGTG--IVV-NVT------VAVVVAVSRSNGELVW 108 (417)
Q Consensus 41 ~~~p~~~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~p~~--~v~-~~~------v~~l~ald~~tG~~~W 108 (417)
.-.|-+.+++|.+++.+ .|.-+++++|+.+=-.+--+. ...+|.| ++. +.. -+-||.++.++|+++-
T Consensus 43 ~l~PDI~GD~IiFt~~D-dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kR 121 (668)
T COG4946 43 YLNPDIYGDRIIFTCCD-DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKR 121 (668)
T ss_pred hcCCcccCcEEEEEech-HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEE
Confidence 34566777777766654 566677777765432221111 1123332 111 111 1889999999998875
Q ss_pred eeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCC
Q 039692 109 STQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVR 160 (417)
Q Consensus 109 ~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~ 160 (417)
..-++........-.| +|.++|.+.-.....+ -..||++..+
T Consensus 122 iTyfGr~fT~VaG~~~---dg~iiV~TD~~tPF~q-------~~~lYkv~~d 163 (668)
T COG4946 122 ITYFGRRFTRVAGWIP---DGEIIVSTDFHTPFSQ-------WTELYKVNVD 163 (668)
T ss_pred EEEeccccceeeccCC---CCCEEEEeccCCCccc-------ceeeeEEccC
Confidence 5555321111111222 6777776543222111 2467777765
No 139
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=60.19 E-value=30 Score=31.72 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=12.8
Q ss_pred CCCCCeEEEEECCCCceEEEecCCC
Q 039692 218 DIYANSIVALDIDSGRIAWAKPLGG 242 (417)
Q Consensus 218 ~~~~~~l~ald~~tG~~~W~~~~~~ 242 (417)
...++.|++++ ..|++ |+...+.
T Consensus 185 ~~~~g~L~~V~-~~G~l-yr~~~p~ 207 (229)
T PF14517_consen 185 FSPDGNLWAVK-SNGKL-YRGRPPQ 207 (229)
T ss_dssp E-TTS-EEEE--ETTEE-EEES---
T ss_pred eCCCCcEEEEe-cCCEE-eccCCcc
Confidence 35678999994 55766 8776654
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=59.61 E-value=96 Score=31.73 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=40.5
Q ss_pred CCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceE
Q 039692 217 SDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFA 296 (417)
Q Consensus 217 ~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l 296 (417)
.+..++.+.|.|.++|+.+-++++.... +.-..|+. ++-|.++=.++.+
T Consensus 568 TGGlDntvRcWDlregrqlqqhdF~SQI--------fSLg~cP~-----------------------~dWlavGMens~v 616 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHDFSSQI--------FSLGYCPT-----------------------GDWLAVGMENSNV 616 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhhhhhhh--------eecccCCC-----------------------ccceeeecccCcE
Confidence 4566789999999999988777765431 22233432 3456666667777
Q ss_pred EEEECCCCcEEEEeec
Q 039692 297 WAFDRDSGDIIWFKLA 312 (417)
Q Consensus 297 ~ald~~tG~~lW~~~~ 312 (417)
.++. .+|....+...
T Consensus 617 evlh-~skp~kyqlhl 631 (705)
T KOG0639|consen 617 EVLH-TSKPEKYQLHL 631 (705)
T ss_pred EEEe-cCCccceeecc
Confidence 7776 34655555543
No 141
>PRK00178 tolB translocation protein TolB; Provisional
Probab=58.74 E-value=2e+02 Score=28.73 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=15.3
Q ss_pred eEEEEEccc--ceEEEEECCCCcEE
Q 039692 285 DVVVAVQKS--GFAWAFDRDSGDII 307 (417)
Q Consensus 285 ~~v~~~~~~--G~l~ald~~tG~~l 307 (417)
.++|....+ ..+|.+|..+|+..
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EEEEEECCCCCceEEEEECCCCCEE
Confidence 455555443 36999999888753
No 142
>PRK05137 tolB translocation protein TolB; Provisional
Probab=57.33 E-value=2.2e+02 Score=28.67 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=29.6
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
..|+.+|..+|+..=-...... .....-+| .+..+++...... ...||.+|.++|+.
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~-~~~~~~SP--DG~~la~~~~~~g-----------~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM-TFAPRFSP--DGRKVVMSLSQGG-----------NTDIYTMDLRSGTT 282 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc-ccCcEECC--CCCEEEEEEecCC-----------CceEEEEECCCCce
Confidence 6789999888865311111111 11122233 2334554433211 25799999987765
No 143
>PHA03098 kelch-like protein; Provisional
Probab=57.18 E-value=2.4e+02 Score=29.17 Aligned_cols=39 Identities=5% Similarity=-0.213 Sum_probs=22.0
Q ss_pred eEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEec
Q 039692 295 FAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIV 337 (417)
Q Consensus 295 ~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~ 337 (417)
.+.++|+.++ .|+...+.+ ........+..++.+|+...
T Consensus 359 ~v~~yd~~~~--~W~~~~~lp--~~r~~~~~~~~~~~iYv~GG 397 (534)
T PHA03098 359 TVESWKPGES--KWREEPPLI--FPRYNPCVVNVNNLIYVIGG 397 (534)
T ss_pred eEEEEcCCCC--ceeeCCCcC--cCCccceEEEECCEEEEECC
Confidence 5778888765 587643211 11222234556778888754
No 144
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.17 E-value=2.6e+02 Score=29.61 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=69.1
Q ss_pred cCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccce
Q 039692 216 SSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGF 295 (417)
Q Consensus 216 ~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~ 295 (417)
..++.++.+...|..-.+=+-.+.......|... ++|.+ ..+|.++++|.
T Consensus 229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~--------------------~~~sf----------~~vYsG~rd~~ 278 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ--------------------SSPSF----------THVYSGGRDGN 278 (735)
T ss_pred eecCCCceEEeeeccccceeeeEEeccCceEEEe--------------------eCCCc----------ceEEecCCCCc
Confidence 3456677777777655555555555444456443 23333 47999999999
Q ss_pred EEEEECCCC-c--EEEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeeecCCCCCCCccceeeeCCeEEeccCCC
Q 039692 296 AWAFDRDSG-D--IIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGSVSA 372 (417)
Q Consensus 296 l~ald~~tG-~--~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~~~g 372 (417)
+++=|..+= + ++.+.+.+ -.....-.+++.+++..-+..-.+|+.+.. .++.+.+++.+..+...
T Consensus 279 i~~Tdl~n~~~~tlick~daP------v~~l~~~~~~~~~WvtTtds~I~rW~~~~~------~~l~~s~~~~~~~T~~~ 346 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLICKEDAP------VLKLHLHEHDNSVWVTTTDSSIKRWKLEPD------IALSVSGDLDFFSTDSN 346 (735)
T ss_pred EEecccCCchhheEeecCCCc------hhhhhhccccCCceeeeccccceecCCccc------cccccCCCCCcccccCC
Confidence 999999873 2 23333321 011112234567788888888888987643 25556666666555544
Q ss_pred C
Q 039692 373 N 373 (417)
Q Consensus 373 ~ 373 (417)
.
T Consensus 347 ~ 347 (735)
T KOG0308|consen 347 N 347 (735)
T ss_pred C
Confidence 4
No 145
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=56.63 E-value=26 Score=21.88 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=23.7
Q ss_pred CCEEEEecc-CCcEEEEECCCCccceEeecc
Q 039692 48 NGVVYFPSW-NGYLYAVNAFNGALIWEQNLS 77 (417)
Q Consensus 48 ~g~v~v~~~-~g~l~ald~~tG~~~W~~~~~ 77 (417)
++++|+++. .+.|..||+.+++++=+...+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 457888774 678999999999887777775
No 146
>PLN02193 nitrile-specifier protein
Probab=56.37 E-value=2.4e+02 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=23.2
Q ss_pred ceEEEEECCCCcEEEEeecCCCC-CCCcceecccccCCeEEEEec
Q 039692 294 GFAWAFDRDSGDIIWFKLAGPGG-REGGGVWGAATDGRRVYTNIV 337 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~~~~~~-~~g~~~~~~~~~~~~vy~~~~ 337 (417)
..++++|+.+. .|+.-...+. ...+.....++.++.||+...
T Consensus 244 ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG 286 (470)
T PLN02193 244 NGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286 (470)
T ss_pred ccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECC
Confidence 36899999864 6876432100 011222234456778888754
No 147
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=56.06 E-value=1.6e+02 Score=30.24 Aligned_cols=125 Identities=11% Similarity=0.106 Sum_probs=66.0
Q ss_pred eeeEEEeCCce------eeCcEEECCEEEEeccCC-------cEEEEECCCCccceEeecccccCCcc-----ee-----
Q 039692 30 LRWSFYAGKDI------SATPAVANGVVYFPSWNG-------YLYAVNAFNGALIWEQNLSKLTGLSG-----TG----- 86 (417)
Q Consensus 30 ~~W~~~~~~~~------~~~p~~~~g~v~v~~~~g-------~l~ald~~tG~~~W~~~~~~~~~~~p-----~~----- 86 (417)
..|.+...... ....++.++.||+-.... .|+.||..|++ |++.....-...| +.
T Consensus 98 ~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~~ 175 (482)
T KOG0379|consen 98 QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGTK 175 (482)
T ss_pred cccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECCE
Confidence 55665554322 223345677777665332 79999987664 5554332111001 10
Q ss_pred -eEEee------eeeEEEEEecCCCceeeeeec-CCC-CCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEE
Q 039692 87 -IVVNV------TVAVVVAVSRSNGELVWSTQI-DPR-PRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKL 157 (417)
Q Consensus 87 -~v~~~------~v~~l~ald~~tG~~~W~~~~-~~~-~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~al 157 (417)
++.+| ....|+++|.++=+ |+.-. .+. +.....-+-+++++++++-....... .+-..+++|
T Consensus 176 l~vfGG~~~~~~~~ndl~i~d~~~~~--W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~-------~~l~D~~~l 246 (482)
T KOG0379|consen 176 LVVFGGIGGTGDSLNDLHIYDLETST--WSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD-------VYLNDVHIL 246 (482)
T ss_pred EEEECCccCcccceeeeeeecccccc--ceecccCCCCCCCCCCceEEEECCeEEEEeccccCC-------ceecceEee
Confidence 12222 13899999998877 98763 222 11111222346677755533322110 013579999
Q ss_pred eCCCCceece
Q 039692 158 DVRNGRIIWQ 167 (417)
Q Consensus 158 d~~tG~~~W~ 167 (417)
|.++ ..|+
T Consensus 247 dl~~--~~W~ 254 (482)
T KOG0379|consen 247 DLST--WEWK 254 (482)
T ss_pred eccc--ceee
Confidence 9998 7777
No 148
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=54.61 E-value=2.1e+02 Score=27.64 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=36.2
Q ss_pred EEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 95 VVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 95 ~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
.++.+|.++.+..|+.-.+-........+.++.++.||+......... ......-..++++|+.+ -.|+.-
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~--~~~~~~~~~v~~Yd~~~--~~W~~~ 100 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS--EGSPQVFDDVYRYDPKK--NSWQKL 100 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC--CCcceecccEEEEECCC--CEEecC
Confidence 467778766666788653211011122334567899988554211000 00000124688999874 458754
No 149
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.28 E-value=2.8e+02 Score=29.04 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=62.2
Q ss_pred eeeeeEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 90 NVTVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 90 ~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
.+.-..||-|+++.|+-+=-+.+.......+...+ ..+.+-+|+. +|.+.++|+++-...=+.+
T Consensus 151 ~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~--~hgLla~Gt~--------------~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 151 VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE--EHGLLACGTE--------------DGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred eecCcceEEEEccccccccccccccccceeeeecC--ccceEEeccc--------------CceEEEecchhhhhheeee
Confidence 33347888899888887766665432222222222 2555665554 6899999998776666555
Q ss_pred ecCCCCCCCCCCCCccccCC--CceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEec
Q 039692 170 MLPDNGGKRGGYSGAAVWGS--SPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKP 239 (417)
Q Consensus 170 ~~~~~~~~~~~~~gg~~~~~--~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~ 239 (417)
......+.++ +...-+ +..+..+ .-.+.+++..|.++..|..+-+++-..+
T Consensus 215 ~~~~v~s~pg----~~~~~svTal~F~d~---------------gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 215 AASSVNSHPG----GDAAPSVTALKFRDD---------------GLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred cccccCCCcc----ccccCcceEEEecCC---------------ceeEEeeccCCcEEEEEcccCCceeecc
Confidence 5322111111 100000 0011110 0123456778888999988887775444
No 150
>PRK03629 tolB translocation protein TolB; Provisional
Probab=54.19 E-value=2.4e+02 Score=28.33 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=30.1
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCcee
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~ 165 (417)
..|+.+|..+|+..-........ .....+| .+..+++..... ....|+.+|.++|+..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~-~~~~~SP--DG~~La~~~~~~-----------g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHN-GAPAFSP--DGSKLAFALSKT-----------GSLNLYVMDLASGQIR 280 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCc-CCeEECC--CCCEEEEEEcCC-----------CCcEEEEEECCCCCEE
Confidence 56888888888654333222211 1123333 233455543310 0236999999888653
No 151
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=53.54 E-value=2.2e+02 Score=27.71 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=16.6
Q ss_pred eeEEEEEcccc---eEEEEECCCCcEEE
Q 039692 284 RDVVVAVQKSG---FAWAFDRDSGDIIW 308 (417)
Q Consensus 284 ~~~v~~~~~~G---~l~ald~~tG~~lW 308 (417)
++.|++...++ .++.+|.+||++-=
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 45666665433 57888888997643
No 152
>PTZ00421 coronin; Provisional
Probab=53.30 E-value=1.7e+02 Score=30.35 Aligned_cols=104 Identities=12% Similarity=0.158 Sum_probs=56.0
Q ss_pred CEEEEeccCCcEEEEECCCCccceEeecccccCC-----cce-e-eEEee----eeeEEEEEecCCCceeeee-ecCCCC
Q 039692 49 GVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL-----SGT-G-IVVNV----TVAVVVAVSRSNGELVWST-QIDPRP 116 (417)
Q Consensus 49 g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----~p~-~-~v~~~----~v~~l~ald~~tG~~~W~~-~~~~~~ 116 (417)
..++.++.++.|..+|+++|+.+-+......... .+. . ++.-+ ..+.+..+|..+.+..... ..+..
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~- 259 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS- 259 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC-
Confidence 3566677899999999999998776654321100 010 0 11111 1255677776554332221 11111
Q ss_pred CcceeeceeEE--cCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 117 RSQITMSGSVY--MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 117 ~~~~~~sp~v~--~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
.....|... ...+|++..+ ++.|..+|..++++.-..
T Consensus 260 --~~~~~~~~d~d~~~L~lggkg-------------Dg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 260 --SALFIPFFDEDTNLLYIGSKG-------------EGNIRCFELMNERLTFCS 298 (493)
T ss_pred --CceEEEEEcCCCCEEEEEEeC-------------CCeEEEEEeeCCceEEEe
Confidence 112223222 3446666543 689999999999876543
No 153
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=52.98 E-value=15 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEcccceEEEEECCCCcEEEE
Q 039692 285 DVVVAVQKSGFAWAFDRDSGDIIWF 309 (417)
Q Consensus 285 ~~v~~~~~~G~l~ald~~tG~~lW~ 309 (417)
++|.+++.+|.+.+... +++.+|+
T Consensus 24 dLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 24 DLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CEEEEEECCCeEEEEEC-CCcCccC
Confidence 57888889999999887 8999885
No 154
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.57 E-value=1.6e+02 Score=29.84 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=64.3
Q ss_pred EEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEeee--e---eEEEEEecCCCceeeeeecCCCCCcceeece
Q 039692 50 VVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVT--V---AVVVAVSRSNGELVWSTQIDPRPRSQITMSG 124 (417)
Q Consensus 50 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~--v---~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp 124 (417)
.+.++...|.|-|||-.|+++..++.+...+...-- +=+..+ + ..+|.+| ..|.++=......+.. .+..-|
T Consensus 143 hlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~-LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~-rLeFLP 219 (545)
T KOG1272|consen 143 HLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTF-LHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVA-RLEFLP 219 (545)
T ss_pred EEEecCCccceeeeecccceeeeeeehhhhhhhhhh-hcchHHHHhhhhceEEEec-CCCcEEeehhhcCchh-hhcccc
Confidence 577888899999999999999999988753321110 011111 1 6777788 5677776655322110 011112
Q ss_pred eEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 125 SVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 125 ~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
---++++.+. .|.|.=.|..+|+++=.+.+
T Consensus 220 ---yHfLL~~~~~-------------~G~L~Y~DVS~GklVa~~~t 249 (545)
T KOG1272|consen 220 ---YHFLLVAASE-------------AGFLKYQDVSTGKLVASIRT 249 (545)
T ss_pred ---hhheeeeccc-------------CCceEEEeechhhhhHHHHc
Confidence 2224444443 58999999999999987776
No 155
>PRK00178 tolB translocation protein TolB; Provisional
Probab=52.30 E-value=2.5e+02 Score=27.97 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=29.7
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
..|+.+|.++|+..--....... .....+| .+..+++...... +..||.+|.++|+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~-~~~~~Sp--DG~~la~~~~~~g-----------~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN-GAPAWSP--DGSKLAFVLSKDG-----------NPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc-CCeEECC--CCCEEEEEEccCC-----------CceEEEEECCCCCe
Confidence 46888888888654322222111 1122233 2344555443210 24799999998764
No 156
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=51.82 E-value=2.3e+02 Score=27.42 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=36.0
Q ss_pred EecCCeeeeEEEEEcc-cceEEEEE--CCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCCc-eeeeec
Q 039692 277 ISTNGRFRDVVVAVQK-SGFAWAFD--RDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDR-IIWSTA 347 (417)
Q Consensus 277 ~~~~G~~~~~v~~~~~-~G~l~ald--~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~-~~W~~~ 347 (417)
+..+| +.||+..+ .+.|.+|+ .++|++......... ......+.+..+++.+|+.+.+++. ..++++
T Consensus 252 ispdg---~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDG---RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E-TTS---SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCC---CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 34455 57888764 44555555 477888765554210 0011222334578889988876653 334443
No 157
>PRK04792 tolB translocation protein TolB; Provisional
Probab=51.31 E-value=2.8e+02 Score=28.14 Aligned_cols=57 Identities=11% Similarity=-0.093 Sum_probs=29.1
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
..||.+|..+|+..-....... ......+| .+..+++..... ....||.+|.++|+.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~-~~~~~wSP--DG~~La~~~~~~-----------g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI-NGAPRFSP--DGKKLALVLSKD-----------GQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC-cCCeeECC--CCCEEEEEEeCC-----------CCeEEEEEECCCCCe
Confidence 4688888888875322222211 11122233 233455433220 024699999987764
No 158
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=50.91 E-value=2.3e+02 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.7
Q ss_pred cCeEEEEeCCccCccccCcccCCCceEEEEeCCCCcee
Q 039692 128 MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 128 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~ 165 (417)
++.|++.... .+.+=-||++||+..
T Consensus 72 dG~VWft~qg-------------~gaiGhLdP~tGev~ 96 (353)
T COG4257 72 DGAVWFTAQG-------------TGAIGHLDPATGEVE 96 (353)
T ss_pred CCceEEecCc-------------cccceecCCCCCceE
Confidence 6778876654 578889999999875
No 159
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.20 E-value=2.9e+02 Score=28.07 Aligned_cols=28 Identities=7% Similarity=-0.029 Sum_probs=22.4
Q ss_pred eEEEEEcccceEEEEECCCCcEEEEeec
Q 039692 285 DVVVAVQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 285 ~~v~~~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
..++.++-|+++-++|..+=|.+-....
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWKY 278 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeeec
Confidence 5788889999999999877777755554
No 160
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=50.10 E-value=2.7e+02 Score=27.58 Aligned_cols=196 Identities=12% Similarity=0.156 Sum_probs=105.9
Q ss_pred ECCEEEEecc-CCcEEEEECCCCccceEeecccc---cCCccee---eEEee--eeeEEEEEecCCCceeeeeecCCCCC
Q 039692 47 ANGVVYFPSW-NGYLYAVNAFNGALIWEQNLSKL---TGLSGTG---IVVNV--TVAVVVAVSRSNGELVWSTQIDPRPR 117 (417)
Q Consensus 47 ~~g~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~---~~~~p~~---~v~~~--~v~~l~ald~~tG~~~W~~~~~~~~~ 117 (417)
.+.++|+.+. ++.+..||.++=+++=....+.. +..+|.+ .+.+. .-+.+..+|..+++++=+...+..+
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P- 162 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP- 162 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-
Confidence 3557998875 47899999665555444444421 1111111 01111 1378889998888887665554322
Q ss_pred cceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeeccc
Q 039692 118 SQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIR 197 (417)
Q Consensus 118 ~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~ 197 (417)
..+...| .+..+|+.... ++.|..+|.+ +..+|+ .......... ..-+ ..++++..
T Consensus 163 ~~~a~~p--~g~~vyv~~~~-------------~~~v~vi~~~-~~~v~~-~~~~~~~~~~-----~~P~--~i~v~~~g 218 (381)
T COG3391 163 TGVAVDP--DGNKVYVTNSD-------------DNTVSVIDTS-GNSVVR-GSVGSLVGVG-----TGPA--GIAVDPDG 218 (381)
T ss_pred ceEEECC--CCCeEEEEecC-------------CCeEEEEeCC-Ccceec-cccccccccC-----CCCc--eEEECCCC
Confidence 1222233 36668887743 6899999965 777775 3311110000 0000 12333322
Q ss_pred CcccCCCCCCCCCCCCcccCC---CCCCeEEEEECCCCceEEE-ecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCce
Q 039692 198 RQKQNNQTTKPTHPDQCISSD---IYANSIVALDIDSGRIAWA-KPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPM 273 (417)
Q Consensus 198 ~~~~~~~~~~p~~~~~~v~~~---~~~~~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~ 273 (417)
. .+|.. ..++.+..+|..+++..+. ...... + |.
T Consensus 219 ~---------------~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~-------------------------~~ 256 (381)
T COG3391 219 N---------------RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--A-------------------------PR 256 (381)
T ss_pred C---------------EEEEEeccCCCceEEEEeCCCceEEEeccccccC--C-------------------------CC
Confidence 2 12222 2246899999999999886 333221 1 11
Q ss_pred EEEEecCCeeeeEEEEEc-ccceEEEEECCCCcEEEEeec
Q 039692 274 LLTISTNGRFRDVVVAVQ-KSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 274 v~~~~~~G~~~~~v~~~~-~~G~l~ald~~tG~~lW~~~~ 312 (417)
......+ ++.+|+.. ..+.+..+|..+.++.=....
T Consensus 257 ~v~~~p~---g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 257 GVAVDPA---GKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ceeECCC---CCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 1112223 35677663 347899999988887766654
No 161
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=49.51 E-value=23 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCEEEEeccCCcEEEEECCCCccceE
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWE 73 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~ 73 (417)
-+.|.+++.+|.|..+.. +|+.+|+
T Consensus 23 mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 23 MDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CCEEEEEECCCeEEEEEC-CCcCccC
Confidence 467888899999999998 8999885
No 162
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.46 E-value=3.7e+02 Score=28.98 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=25.7
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEeecC
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKLAG 313 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~~~ 313 (417)
+..++..+.+|.+.-+|.++|+.+-+...+
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~ 279 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQS 279 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccC
Confidence 568888899999999999999988777654
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.42 E-value=1.9e+02 Score=29.01 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=63.1
Q ss_pred cccCCCCCCeEEEEECCCCceEEEecCCCCc----ceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEE
Q 039692 214 CISSDIYANSIVALDIDSGRIAWAKPLGGYD----IFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVA 289 (417)
Q Consensus 214 ~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~ 289 (417)
.+..++.+..+...|.++|+..-........ .|. ... ..+++.
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh---------------------~~~------------p~~LLs 304 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH---------------------PYE------------PSVLLS 304 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec---------------------CCC------------ceEEEe
Confidence 3455677888999999999987766532221 110 012 234566
Q ss_pred EcccceEEEEECC---CCcEEEEeecCCC----CCCCcceecccccCCeEEEEeccCC-ceeeeecCCC
Q 039692 290 VQKSGFAWAFDRD---SGDIIWFKLAGPG----GREGGGVWGAATDGRRVYTNIVNND-RIIWSTADPS 350 (417)
Q Consensus 290 ~~~~G~l~ald~~---tG~~lW~~~~~~~----~~~g~~~~~~~~~~~~vy~~~~~~~-~~~W~~~~~~ 350 (417)
++.|+.+...|.. .-...|++...-. .......+....++|+||-.|.... +.+|+.....
T Consensus 305 Gs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 305 GSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred ccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc
Confidence 7777777777766 3345566654210 0001233345678899999987654 9999987653
No 164
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=49.16 E-value=2e+02 Score=27.73 Aligned_cols=104 Identities=12% Similarity=-0.002 Sum_probs=62.7
Q ss_pred EEEEeccCCcEEEEECCCCccceEeecccccCCcce-eeE----E-eeee-----eEEEEEecCCCceeeeeecCCCCCc
Q 039692 50 VVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGT-GIV----V-NVTV-----AVVVAVSRSNGELVWSTQIDPRPRS 118 (417)
Q Consensus 50 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~-~~v----~-~~~v-----~~l~ald~~tG~~~W~~~~~~~~~~ 118 (417)
.|+-++.+|.+...+.+|++-+=.++..+.-. |. .++ + ..++ ..+|.++. .|.+.-++.-+....+
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~--~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDY--PVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGG 438 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcc--cceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCC
Confidence 55666678888888888888776666553211 11 000 0 0111 77788874 5888777765443333
Q ss_pred ceeecee-EEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 119 QITMSGS-VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 119 ~~~~sp~-v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.+.++-+ .-++-+|.... ++.+||+...+|+.-=..+.
T Consensus 439 dFi~~~lSpkGewiYcigE--------------D~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGE--------------DGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred ceEEEEecCCCcEEEEEcc--------------CcEEEEEEeecCceeeeeec
Confidence 3332222 23555776554 69999999999998765554
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.11 E-value=1.6e+02 Score=30.23 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=49.3
Q ss_pred EeccCCcEEEEECCCCccceEeecccccC---CcceeeEEee-eeeEEEEEecCCCceeeeeecCCCCCcceeeceeEEc
Q 039692 53 FPSWNGYLYAVNAFNGALIWEQNLSKLTG---LSGTGIVVNV-TVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYM 128 (417)
Q Consensus 53 v~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~p~~~v~~~-~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~ 128 (417)
-+++++.+.-.+ .-|+.|.+.+..+.. ..|.+++.-| .-|+...+|.++- .+=+...+.++...+.-+| .+
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~-~lv~~~~d~~~ls~v~ysp--~G 459 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ-DLVTIHTDNEQLSVVRYSP--DG 459 (626)
T ss_pred eccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc-eeEEEEecCCceEEEEEcC--CC
Confidence 334567777777 678999999886532 2344545544 3499999999884 4444444455544445555 25
Q ss_pred CeEEEEeC
Q 039692 129 GAFYVGLS 136 (417)
Q Consensus 129 ~~v~v~~~ 136 (417)
..+-+|+.
T Consensus 460 ~~lAvgs~ 467 (626)
T KOG2106|consen 460 AFLAVGSH 467 (626)
T ss_pred CEEEEecC
Confidence 55666766
No 166
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=48.73 E-value=91 Score=25.00 Aligned_cols=58 Identities=17% Similarity=0.396 Sum_probs=36.1
Q ss_pred EEEEEcccceEEEEECCCCcEEEEeecCCCCCCC-cceecccccCCeEEEEeccCCceeeeec
Q 039692 286 VVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREG-GGVWGAATDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 286 ~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g-~~~~~~~~~~~~vy~~~~~~~~~~W~~~ 347 (417)
..+.-..||.|...|.. |+.+|...... ..+ ........+++.+.+.+ ..++.+|+.-
T Consensus 21 ~~L~l~~dGnLvl~~~~-~~~iWss~~t~--~~~~~~~~~~L~~~GNlvl~d-~~~~~lW~Sf 79 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSN-GSVIWSSNNTS--GRGNSGCYLVLQDDGNLVLYD-SSGNVLWQSF 79 (114)
T ss_dssp EEEEEETTSEEEEEETT-TEEEEE--S-T--TSS-SSEEEEEETTSEEEEEE-TTSEEEEEST
T ss_pred ccceECCCCeEEEEcCC-CCEEEEecccC--CccccCeEEEEeCCCCEEEEe-ecceEEEeec
Confidence 45556779999999865 78899993211 011 12222334677777776 5889999873
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=47.34 E-value=1.9e+02 Score=28.78 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=45.5
Q ss_pred cCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEE--ecCCeeeeEEEEEccc
Q 039692 216 SSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTI--STNGRFRDVVVAVQKS 293 (417)
Q Consensus 216 ~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~--~~~G~~~~~v~~~~~~ 293 (417)
.....++.+...|..||+.+-... ..+ ++... ..| +..+...++|
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~--hpd----------------------------~i~S~sfn~d---Gs~l~TtckD 194 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD--HPD----------------------------MVYSMSFNRD---GSLLCTTCKD 194 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC--CCC----------------------------eEEEEEeccC---Cceeeeeccc
Confidence 345667889999999999887655 111 11211 223 3577778899
Q ss_pred ceEEEEECCCCcEEEEee
Q 039692 294 GFAWAFDRDSGDIIWFKL 311 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~ 311 (417)
.++..+|+.+|+++++..
T Consensus 195 KkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ceeEEEcCCCCcEeeecc
Confidence 999999999999999884
No 168
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=46.70 E-value=56 Score=29.97 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=27.0
Q ss_pred eEEEEEecCCCceeeeeecCCCC-CcceeeceeEEc-C---eEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRP-RSQITMSGSVYM-G---AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~-~~~~~~sp~v~~-~---~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
+.||+++ .+| .+++..-+... ..-+..+-++.+ + ..++.+.. ++.|++++ ..|++ |+.
T Consensus 141 GvLY~i~-~dg-~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~-------------~g~L~~V~-~~G~l-yr~ 203 (229)
T PF14517_consen 141 GVLYAIT-PDG-RLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSP-------------DGNLWAVK-SNGKL-YRG 203 (229)
T ss_dssp S-EEEEE-TTE--EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-T-------------TS-EEEE--ETTEE-EEE
T ss_pred ccEEEEc-CCC-ceEEeCCCCCCCCccccccceeccCCcccceEEeeCC-------------CCcEEEEe-cCCEE-ecc
Confidence 9999999 456 33333211111 111233444442 2 34444432 68999994 44666 865
Q ss_pred ee
Q 039692 169 YM 170 (417)
Q Consensus 169 ~~ 170 (417)
..
T Consensus 204 ~~ 205 (229)
T PF14517_consen 204 RP 205 (229)
T ss_dssp S-
T ss_pred CC
Confidence 54
No 169
>PLN02153 epithiospecifier protein
Probab=46.60 E-value=2.8e+02 Score=26.77 Aligned_cols=37 Identities=22% Similarity=-0.053 Sum_probs=20.9
Q ss_pred cccccCCeEEEecCeeeeccCCC-CCCCCCCEEEEEEe
Q 039692 380 GVPASYGCIYLGNGYTVSLGKFH-PTWTPGTSLYAFCT 416 (417)
Q Consensus 380 sp~~~~g~lyv~~~~~~~~~~~~-~~~~~~~~~~~~~~ 416 (417)
+.++.+++|||--|+.....+-| +....-|.||.|++
T Consensus 246 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~ 283 (341)
T PLN02153 246 AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT 283 (341)
T ss_pred eeEEECCEEEEECcccCCccccccccccccccEEEEEc
Confidence 44666999999766532101111 12234567888876
No 170
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=46.22 E-value=3.6e+02 Score=28.00 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=61.7
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~ 230 (417)
.|.+..++...|++-|++....... +. ..+.+.. .-.|+|....+..+.-++.+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~--------~v----~~~~~~~--------------~~~ciyS~~ad~~v~~~~~~ 132 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYG--------NV----NEILDAQ--------------RLGCIYSVGADLKVVYILEK 132 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCC--------cc----eeeeccc--------------ccCceEecCCceeEEEEecc
Confidence 5899999999999999988632110 00 0111111 22466777777788888888
Q ss_pred CCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 231 SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 231 tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
+++..=.+...... .++-++. .|| +.+..++ +.+-.+|.+++|++=.+
T Consensus 133 ~~~~~~~~~~~~~~------------------------~~sl~is---~D~---~~l~~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 133 EKVIIRIWKEQKPL------------------------VSSLCIS---PDG---KILLTAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred cceeeeeeccCCCc------------------------cceEEEc---CCC---CEEEecc--ceEEEEEccCceEEEEe
Confidence 88765433332211 0122222 222 3444443 47889999999998777
Q ss_pred ec
Q 039692 311 LA 312 (417)
Q Consensus 311 ~~ 312 (417)
+.
T Consensus 181 tg 182 (541)
T KOG4547|consen 181 TG 182 (541)
T ss_pred cC
Confidence 64
No 171
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=45.97 E-value=1.4e+02 Score=24.13 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=42.8
Q ss_pred ceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCCC----CCCCcceecccccCCeEEEEeccCCceeeeec
Q 039692 272 PMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPG----GREGGGVWGAATDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 272 p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~----~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~ 347 (417)
-.+.|+.-+| .+.|++++.|..+..|+- .+++++...... ...+...+.-+..+++|=+- +..+++|+.+
T Consensus 5 l~~~d~d~dg--~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY--~~~~RlWRiK 78 (111)
T PF14783_consen 5 LCLFDFDGDG--ENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVY--DRSQRLWRIK 78 (111)
T ss_pred EEEEecCCCC--cceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEE--eCcceeeeec
Confidence 3445555555 478888999999999974 488898876311 00111222233344443222 3358999998
Q ss_pred CC
Q 039692 348 DP 349 (417)
Q Consensus 348 ~~ 349 (417)
..
T Consensus 79 SK 80 (111)
T PF14783_consen 79 SK 80 (111)
T ss_pred cC
Confidence 65
No 172
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.86 E-value=3.1e+02 Score=28.43 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=61.4
Q ss_pred EEEEeccCCcEEEEECCCCccceEeecccccCCcce-------eeEE-eeeeeEEEEEecCCCceeeeeecCCCCCccee
Q 039692 50 VVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGT-------GIVV-NVTVAVVVAVSRSNGELVWSTQIDPRPRSQIT 121 (417)
Q Consensus 50 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~-------~~v~-~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~ 121 (417)
.+.+++..|.+..++...|++-|+...+....---+ +.++ .+...++.-++.++++..=+.+........+.
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 577888899999999999999999997753220000 0011 11336666666666665433333222212222
Q ss_pred eceeEEcCe-EEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 122 MSGSVYMGA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 122 ~sp~v~~~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.+| ++. +.+++ +.|--+|.+|++++=+|.-
T Consensus 152 is~---D~~~l~~as----------------~~ik~~~~~~kevv~~ftg 182 (541)
T KOG4547|consen 152 ISP---DGKILLTAS----------------RQIKVLDIETKEVVITFTG 182 (541)
T ss_pred EcC---CCCEEEecc----------------ceEEEEEccCceEEEEecC
Confidence 233 333 33333 5899999999999877665
No 173
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=43.95 E-value=3.3e+02 Score=26.81 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=22.6
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceecee
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQT 168 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~ 168 (417)
+.++.++.||+..... ...++.+|.++-+..|+.
T Consensus 33 ~~~~~~~~iyv~gG~~------------~~~~~~~d~~~~~~~W~~ 66 (376)
T PRK14131 33 TGAIDNNTVYVGLGSA------------GTSWYKLDLNAPSKGWTK 66 (376)
T ss_pred eEEEECCEEEEEeCCC------------CCeEEEEECCCCCCCeEE
Confidence 4556789999854321 245888998765667863
No 174
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=42.32 E-value=2.8e+02 Score=25.60 Aligned_cols=24 Identities=42% Similarity=0.575 Sum_probs=19.9
Q ss_pred ECCEEEEeccCCcEEEEECCCCcc
Q 039692 47 ANGVVYFPSWNGYLYAVNAFNGAL 70 (417)
Q Consensus 47 ~~g~v~v~~~~g~l~ald~~tG~~ 70 (417)
.++.||.-+..++||.||+.||..
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~a 60 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAA 60 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeE
Confidence 478888877788999999998874
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=41.04 E-value=2.5e+02 Score=27.36 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred eEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCC
Q 039692 130 AFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPT 209 (417)
Q Consensus 130 ~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~ 209 (417)
.|.++.++ |.+..||+.||+.+=.+...|.... ...+-....-
T Consensus 42 ~vav~lSn--------------gsv~lyd~~tg~~l~~fk~~~~~~N-------------~vrf~~~ds~---------- 84 (376)
T KOG1188|consen 42 AVAVSLSN--------------GSVRLYDKGTGQLLEEFKGPPATTN-------------GVRFISCDSP---------- 84 (376)
T ss_pred eEEEEecC--------------CeEEEEeccchhhhheecCCCCccc-------------ceEEecCCCC----------
Q ss_pred CCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeecc-C--CCCCCCCCCCCCCCccCCCceEEEEecCCe----
Q 039692 210 HPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCL-V--PNNPDCPPGPNLDADFGEAPMLLTISTNGR---- 282 (417)
Q Consensus 210 ~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~-~--~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~---- 282 (417)
..++.++.+|.+.++|.++-.+.-++.......-.+.+. . +.+..|-....+..+. ..++.|++.+-+
T Consensus 85 ---h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A--~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 85 ---HGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDA--SVVLWDVRSEQQLLRQ 159 (376)
T ss_pred ---CeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCce--EEEEEEeccccchhhh
Q ss_pred -----------------eeeEEEEEcccceEEEEECC
Q 039692 283 -----------------FRDVVVAVQKSGFAWAFDRD 302 (417)
Q Consensus 283 -----------------~~~~v~~~~~~G~l~ald~~ 302 (417)
.-++|..++.||-+-.||.+
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
No 176
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=40.81 E-value=4.3e+02 Score=27.29 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=34.6
Q ss_pred eEEEEEecCCCceeeeeec-CCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 94 AVVVAVSRSNGELVWSTQI-DPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~-~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
++|+-++++.|.+.=+..+ .......+.+--...+|.|+.|-++ |.|...++.+-+.
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~--------------G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG--------------GNILIWSKGTNRI 279 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC--------------ceEEEEeCCCceE
Confidence 8899999887776655443 2211111222112347788888874 8898888854433
No 177
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.71 E-value=4.1e+02 Score=27.01 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=81.3
Q ss_pred eEEEEEec-CCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecC
Q 039692 94 AVVVAVSR-SNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLP 172 (417)
Q Consensus 94 ~~l~ald~-~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~ 172 (417)
..|..+|+ ++|+.+=...--......+...| .+.+++..+. |+.+...|.++|+.+=......
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~-------------D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSD-------------DGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecC---CCCEEEEecC-------------CCcEEEEeccCCeEEEeeeccC
Confidence 77888887 55676655552111111122222 4444443332 7899999999988876655522
Q ss_pred CCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccC
Q 039692 173 DNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLV 252 (417)
Q Consensus 173 ~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~ 252 (417)
... +..++.++ +..+..+++++.+...|..+|+.+ -...-...
T Consensus 289 ~~i-------------s~~~f~~d---------------~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~-------- 331 (456)
T KOG0266|consen 289 DGI-------------SGLAFSPD---------------GNLLVSASYDGTIRVWDLETGSKL-CLKLLSGA-------- 331 (456)
T ss_pred Cce-------------EEEEECCC---------------CCEEEEcCCCccEEEEECCCCcee-eeecccCC--------
Confidence 111 11122222 122445577899999999999965 11110000
Q ss_pred CCCCCCCCCCCCCCccCCCceE-EEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeec
Q 039692 253 PNNPDCPPGPNLDADFGEAPML-LTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 253 ~~~~~c~~~~~~~~~~~~~p~v-~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
....|+- +....+ ++.++.+..++.+...|...++.+=....
T Consensus 332 ---------------~~~~~~~~~~fsp~---~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 332 ---------------ENSAPVTSVQFSPN---GKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred ---------------CCCCceeEEEECCC---CcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 0011121 222233 46788888888898888888876655543
No 178
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=40.71 E-value=3.7e+02 Score=26.47 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=42.9
Q ss_pred CcEEEEECCCCccceEeecccccC---Cccee--eEEe-e--eeeEEEEEecCCCceeeeeecCCCCCcceeeceeE--E
Q 039692 58 GYLYAVNAFNGALIWEQNLSKLTG---LSGTG--IVVN-V--TVAVVVAVSRSNGELVWSTQIDPRPRSQITMSGSV--Y 127 (417)
Q Consensus 58 g~l~ald~~tG~~~W~~~~~~~~~---~~p~~--~v~~-~--~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v--~ 127 (417)
..|+.+|.++|+..-......... .+|.+ ++.. . -...||.+|..+++..= ...... ....|.. .
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~----~~~~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG----IDTEPSWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC----CCCCEEECCC
Confidence 479999999887543332222111 12211 1100 0 01468888887775421 111111 1112222 2
Q ss_pred cCeEEEEeCCccCccccCcccCCCceEEEEeCCCCce
Q 039692 128 MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRI 164 (417)
Q Consensus 128 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~ 164 (417)
+..+++.+.... ...||.+|.++|+.
T Consensus 289 g~~l~~~s~~~g-----------~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 289 GKSIAFTSDRGG-----------SPQIYMMDADGGEV 314 (417)
T ss_pred CCEEEEEECCCC-----------CceEEEEECCCCCE
Confidence 334555443210 24799999987764
No 179
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.69 E-value=31 Score=31.79 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=24.1
Q ss_pred CCEEEEeccC-CcEEEEECCCCccceEeeccc
Q 039692 48 NGVVYFPSWN-GYLYAVNAFNGALIWEQNLSK 78 (417)
Q Consensus 48 ~g~v~v~~~~-g~l~ald~~tG~~~W~~~~~~ 78 (417)
+|.+|++..+ ++++.+|+.|||++=++.++.
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 6788887754 678888888888888888773
No 180
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.25 E-value=2.6e+02 Score=27.92 Aligned_cols=104 Identities=8% Similarity=-0.031 Sum_probs=63.4
Q ss_pred CEEEEec-cCCcEEEEECCCCccceEeecccccCCcceeeEEee-------eeeEEEEEecCCCceeeeeecCCCC----
Q 039692 49 GVVYFPS-WNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV-------TVAVVVAVSRSNGELVWSTQIDPRP---- 116 (417)
Q Consensus 49 g~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~-------~v~~l~ald~~tG~~~W~~~~~~~~---- 116 (417)
...++.+ .+.+|.++|.++++..=+.++++.+.+ ..+.-++ -...|-.+|..+-+++=.+....-.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtS--l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTS--LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceee--EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 4444443 578999999999999999988875432 1111111 1266667777666666555543211
Q ss_pred CcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 117 RSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 117 ~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
......+| .+..|..|+. +|.||-.+..|||..-+...
T Consensus 390 wtrvvfSp--d~~YvaAGS~--------------dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 390 WTRVVFSP--DGSYVAAGSA--------------DGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred cceeEECC--CCceeeeccC--------------CCcEEEEEccCceEEEEecc
Confidence 11223333 1333444544 69999999999999877665
No 181
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=39.80 E-value=2.9e+02 Score=30.41 Aligned_cols=90 Identities=11% Similarity=0.157 Sum_probs=54.1
Q ss_pred eeEEEEE-cccceEEEEECCCCcEE--EEeecCC-------CCC---CCcceecccccCCeEEEEeccC--CceeeeecC
Q 039692 284 RDVVVAV-QKSGFAWAFDRDSGDII--WFKLAGP-------GGR---EGGGVWGAATDGRRVYTNIVNN--DRIIWSTAD 348 (417)
Q Consensus 284 ~~~v~~~-~~~G~l~ald~~tG~~l--W~~~~~~-------~~~---~g~~~~~~~~~~~~vy~~~~~~--~~~~W~~~~ 348 (417)
.++|+.- .....||-+|++.||++ |...-.. ..- .-.......++++.+|..|..- .+.+|....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 4455543 34578999999999986 7665421 100 0012223456777888887643 356674321
Q ss_pred C--CCCCCccceeeeCCeEEeccCCCC
Q 039692 349 P--SNETAHGPVTVVNGVLFAGSVSAN 373 (417)
Q Consensus 349 ~--~~~~~~~p~~~~~~~v~~~~~~g~ 373 (417)
. ....-++-.+..+|.|.+|+..|.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~ 599 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGD 599 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCc
Confidence 1 113334455588899999999998
No 182
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=39.07 E-value=3.7e+02 Score=26.05 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=25.0
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEeec
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
+++||.++..|.+..+|+.|=+.+=+.++
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeee
Confidence 67999999999999999999887766654
No 183
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=37.82 E-value=1.7e+02 Score=26.04 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=41.3
Q ss_pred eeeEEEEEecCCCceeeeeecCCCCCcceeece--e--EEcCe--EEEEeCCccCccccCcccCCCceEEEEeCCCCcee
Q 039692 92 TVAVVVAVSRSNGELVWSTQIDPRPRSQITMSG--S--VYMGA--FYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII 165 (417)
Q Consensus 92 ~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp--~--v~~~~--v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~ 165 (417)
.+|.||..|..+++. |+..++.... ..+| + +.+.. |++|..-+. .+..|.||.|++.||+..
T Consensus 86 giGkIYIkn~~~~~~-~~L~i~~~~~---k~sPK~i~WiDD~~L~vIIG~a~GT--------vS~GGnLy~~nl~tg~~~ 153 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNW-WSLQIDQNEE---KYSPKYIEWIDDNNLAVIIGYAHGT--------VSKGGNLYKYNLNTGNLT 153 (200)
T ss_pred cceeEEEEecCCCce-EEEEecCccc---ccCCceeEEecCCcEEEEEccccce--------EccCCeEEEEEccCCcee
Confidence 359999999888877 9888765421 2233 2 33444 334433221 123689999999999875
Q ss_pred ceeee
Q 039692 166 WQTYM 170 (417)
Q Consensus 166 W~~~~ 170 (417)
=-++.
T Consensus 154 ~ly~~ 158 (200)
T PF15525_consen 154 ELYEW 158 (200)
T ss_pred Eeeec
Confidence 44443
No 184
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=37.22 E-value=4.2e+02 Score=26.17 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCEEEEec---cC-CcEEEEECCCC---ccceEeecccccCCcceeeEEeeee----------eEEEEEecCCCce-eee
Q 039692 48 NGVVYFPS---WN-GYLYAVNAFNG---ALIWEQNLSKLTGLSGTGIVVNVTV----------AVVVAVSRSNGEL-VWS 109 (417)
Q Consensus 48 ~g~v~v~~---~~-g~l~ald~~tG---~~~W~~~~~~~~~~~p~~~v~~~~v----------~~l~ald~~tG~~-~W~ 109 (417)
+..+++.. .. ..++.+|+.++ ...|+.-........-..-...+.. ++|++++..+... .|+
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~ 317 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW 317 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Q ss_pred eecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCC
Q 039692 110 TQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGS 189 (417)
Q Consensus 110 ~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~ 189 (417)
..+..+........-.+.++.+++....... ..|..+|...|++.-.... ...+.+.+.
T Consensus 318 ~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~-----------~~l~v~~~~~~~~~~~~~~----------p~~g~v~~~ 376 (414)
T PF02897_consen 318 TVLIPEDEDVSLEDVSLFKDYLVLSYRENGS-----------SRLRVYDLDDGKESREIPL----------PEAGSVSGV 376 (414)
T ss_dssp EEEE--SSSEEEEEEEEETTEEEEEEEETTE-----------EEEEEEETT-TEEEEEEES----------SSSSEEEEE
T ss_pred eEEcCCCCceeEEEEEEECCEEEEEEEECCc-----------cEEEEEECCCCcEEeeecC----------CcceEEecc
Q ss_pred CceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECCCCceE
Q 039692 190 SPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDIDSGRIA 235 (417)
Q Consensus 190 ~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~tG~~~ 235 (417)
....+.............| ..++.+|.++|+..
T Consensus 377 ~~~~~~~~~~~~~ss~~~P-------------~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 377 SGDFDSDELRFSYSSFTTP-------------PTVYRYDLATGELT 409 (414)
T ss_dssp ES-TT-SEEEEEEEETTEE-------------EEEEEEETTTTCEE
T ss_pred CCCCCCCEEEEEEeCCCCC-------------CEEEEEECCCCCEE
No 185
>PRK04043 tolB translocation protein TolB; Provisional
Probab=36.85 E-value=4.5e+02 Score=26.42 Aligned_cols=51 Identities=10% Similarity=-0.083 Sum_probs=27.3
Q ss_pred ceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCC-ceeeeecCC
Q 039692 294 GFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNND-RIIWSTADP 349 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~-~~~W~~~~~ 349 (417)
..++.+|+++|+.. .+..... ......+.+++.|+......+ ..++..+..
T Consensus 349 ~~I~v~d~~~g~~~---~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 349 FNLYLISTNSDYIR---RLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cEEEEEECCCCCeE---ECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 47999999988742 2211101 111223456776666554443 457777654
No 186
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=36.85 E-value=98 Score=29.48 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=48.0
Q ss_pred CcccCCCCCCeEEEEECC-CCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEc
Q 039692 213 QCISSDIYANSIVALDID-SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQ 291 (417)
Q Consensus 213 ~~v~~~~~~~~l~ald~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~ 291 (417)
+.+|.+..++.+.|.|.+ .++.+|+..-....+ +.+ +.++|- ..-.|+.++
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G--V~S-----------------I~ss~~---------~~~~I~TGs 230 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG--VVS-----------------IYSSPP---------KPTYIATGS 230 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeecc--eEE-----------------EecCCC---------CCceEEEec
Confidence 457888899999999999 688888743322210 000 011111 034688899
Q ss_pred ccceEEEEECCC-CcEEEEeec
Q 039692 292 KSGFAWAFDRDS-GDIIWFKLA 312 (417)
Q Consensus 292 ~~G~l~ald~~t-G~~lW~~~~ 312 (417)
.|-.+..+|..+ |+++.....
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~v 252 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAKV 252 (339)
T ss_pred cccceeeeehhcccCccccCcc
Confidence 999999999985 888766665
No 187
>smart00284 OLF Olfactomedin-like domains.
Probab=36.21 E-value=3.7e+02 Score=25.17 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=25.9
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
.-+|.++.+|.-..+ ...|..+|.++++..=+..+
T Consensus 78 G~VVYngslYY~~~~-------------s~~iiKydL~t~~v~~~~~L 112 (255)
T smart00284 78 GVVVYNGSLYFNKFN-------------SHDICRFDLTTETYQKEPLL 112 (255)
T ss_pred cEEEECceEEEEecC-------------CccEEEEECCCCcEEEEEec
Confidence 356889999986654 46899999999988633333
No 188
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=35.91 E-value=6.5e+02 Score=27.94 Aligned_cols=61 Identities=7% Similarity=0.211 Sum_probs=35.3
Q ss_pred eEEEEEcccceEEEEECCCCcEEEEeecCCCCC-CCcceecccccCCeEEEEeccCCceeeeec
Q 039692 285 DVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGR-EGGGVWGAATDGRRVYTNIVNNDRIIWSTA 347 (417)
Q Consensus 285 ~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~-~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~ 347 (417)
+.+.+...++.+..+++++.+++.......... .....|+| .+..+-+...++.-.+|..+
T Consensus 201 g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP--nG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 201 GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP--NGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC--CCcEEeeeccCCcEEEEecc
Confidence 456667777899999999998888776531100 00112222 24444445555556666655
No 189
>PRK04043 tolB translocation protein TolB; Provisional
Probab=35.37 E-value=4.8e+02 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=17.3
Q ss_pred cCCeeeeEEEEEcccc--eEEEEECCCCcE
Q 039692 279 TNGRFRDVVVAVQKSG--FAWAFDRDSGDI 306 (417)
Q Consensus 279 ~~G~~~~~v~~~~~~G--~l~ald~~tG~~ 306 (417)
.|| +.++|..++.| .||.+|+++|+.
T Consensus 286 PDG--~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 286 EDD--KRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred CCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence 355 34555554433 799999998876
No 190
>PF13964 Kelch_6: Kelch motif
Probab=35.29 E-value=40 Score=22.24 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=21.8
Q ss_pred ccccccCCeEEEecCeeeeccCCCCCCCCCCEEEEEEe
Q 039692 379 GGVPASYGCIYLGNGYTVSLGKFHPTWTPGTSLYAFCT 416 (417)
Q Consensus 379 ~sp~~~~g~lyv~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
.+.++.+++|||--|+... ...-+.++.|++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~-------~~~~~~v~~yd~ 35 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNS-------GKYSNDVERYDP 35 (50)
T ss_pred CEEEEECCEEEEECCCCCC-------CCccccEEEEcC
Confidence 4557789999997776652 355677777765
No 191
>PTZ00420 coronin; Provisional
Probab=35.25 E-value=5.6e+02 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=37.5
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~ 230 (417)
++.|.-+|.++++.+.++... .. + .+.++++.. ..+..+..++.+..+|++
T Consensus 147 DgtIrIWDl~tg~~~~~i~~~-~~-----------V--~SlswspdG---------------~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQINMP-KK-----------L--SSLKWNIKG---------------NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CCeEEEEECCCCcEEEEEecC-Cc-----------E--EEEEECCCC---------------CEEEEEecCCEEEEEECC
Confidence 689999999999888765431 10 0 012222211 122234457889999999
Q ss_pred CCceEEEecC
Q 039692 231 SGRIAWAKPL 240 (417)
Q Consensus 231 tG~~~W~~~~ 240 (417)
+|+++-++..
T Consensus 198 sg~~i~tl~g 207 (568)
T PTZ00420 198 KQEIASSFHI 207 (568)
T ss_pred CCcEEEEEec
Confidence 9998865543
No 192
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=34.69 E-value=3.9e+02 Score=25.03 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=31.9
Q ss_pred eEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeee
Q 039692 285 DVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWST 346 (417)
Q Consensus 285 ~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~ 346 (417)
..++.++.+|.+++-|+.+- +-..+.-|....--....+..|+..+.+.+.++.--.|+.
T Consensus 137 teLis~dqsg~irvWDl~~~--~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGEN--SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred ceEEeecCCCcEEEEEccCC--ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 45777888898888887532 2333332211110111123345666666666666666664
No 193
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=34.21 E-value=5.1e+02 Score=26.20 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=59.7
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee--ee-----eEEEEEe--------------------
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV--TV-----AVVVAVS-------------------- 100 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~--~v-----~~l~ald-------------------- 100 (417)
.+.|.|.+.||.|.-++.+ ....++.++...-..|...+.+. ++ ..|.|+.
T Consensus 145 ~~~IcVQS~DG~L~~feqe--~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQE--SFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCC--cEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 5788899999999999963 56677777764443444222221 21 2344433
Q ss_pred ---cCCCceeeeeecCCCCCcc--eeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeec
Q 039692 101 ---RSNGELVWSTQIDPRPRSQ--ITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYML 171 (417)
Q Consensus 101 ---~~tG~~~W~~~~~~~~~~~--~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~ 171 (417)
.+.=..-|++.+++..... +..+. ....|+|-. +..|+||+. +|+++|+.++.
T Consensus 223 ~~~~k~l~~dWs~nlGE~~l~i~v~~~~~--~~~~IvvLg---------------er~Lf~l~~-~G~l~~~krLd 280 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNLGEQALDIQVVRFSS--SESDIVVLG---------------ERSLFCLKD-NGSLRFQKRLD 280 (418)
T ss_pred ccccccccceeEEECCceeEEEEEEEcCC--CCceEEEEe---------------cceEEEEcC-CCeEEEEEecC
Confidence 1122357888887643211 00000 011233322 368999998 59999998883
No 194
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=34.12 E-value=4.2e+02 Score=25.20 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEc
Q 039692 212 DQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQ 291 (417)
Q Consensus 212 ~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~ 291 (417)
+..+..++++..+-..|.++-+++=.+....+. ..-..+..|| .+...++
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~---------------------------v~t~~vSpDG---slcasGg 211 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY---------------------------VNTVTVSPDG---SLCASGG 211 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhcccccccc---------------------------EEEEEECCCC---CEEecCC
Confidence 344556788889999998887776544432221 1112233455 3455578
Q ss_pred ccceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEE-eccCCceeeeecC
Q 039692 292 KSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTN-IVNNDRIIWSTAD 348 (417)
Q Consensus 292 ~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~-~~~~~~~~W~~~~ 348 (417)
++|.++..|++.||-+-..+.. ....+.++..++.... .....-.+|..+.
T Consensus 212 kdg~~~LwdL~~~k~lysl~a~------~~v~sl~fspnrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLEAF------DIVNSLCFSPNRYWLCAATATSIKIWDLES 263 (315)
T ss_pred CCceEEEEEccCCceeEeccCC------CeEeeEEecCCceeEeeccCCceEEEeccc
Confidence 8999999999999988777642 2222344555544433 3334466777654
No 195
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=33.35 E-value=2e+02 Score=26.78 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.7
Q ss_pred eeeeEEEeCCceeeCcEEECCEEEEeccC-----CcEEEEECCCCccc
Q 039692 29 RLRWSFYAGKDISATPAVANGVVYFPSWN-----GYLYAVNAFNGALI 71 (417)
Q Consensus 29 ~~~W~~~~~~~~~~~p~~~~g~v~v~~~~-----g~l~ald~~tG~~~ 71 (417)
+..|.......-.+...+.=|.||+.... ...+|+|..+++..
T Consensus 161 ~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~ 208 (250)
T PF02191_consen 161 EQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEE 208 (250)
T ss_pred EEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCcee
Confidence 44777776665555566777888877533 24588888888765
No 196
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.29 E-value=3.6e+02 Score=28.07 Aligned_cols=90 Identities=10% Similarity=0.126 Sum_probs=54.5
Q ss_pred eeEEEEE-cccceEEEEECCCCcEE--EEeecC-C-----CCCC----CcceecccccCCeEEEEeccC---Cceeeeec
Q 039692 284 RDVVVAV-QKSGFAWAFDRDSGDII--WFKLAG-P-----GGRE----GGGVWGAATDGRRVYTNIVNN---DRIIWSTA 347 (417)
Q Consensus 284 ~~~v~~~-~~~G~l~ald~~tG~~l--W~~~~~-~-----~~~~----g~~~~~~~~~~~~vy~~~~~~---~~~~W~~~ 347 (417)
.++|+.. .....||-+|.+.||++ |+.+-. + +... -.....+..++++||-.|+.- .++.|...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3455543 33467999999999986 776543 0 1111 011223446778888877542 25667543
Q ss_pred CCC--CCCCccceeeeCCeEEeccCCCC
Q 039692 348 DPS--NETAHGPVTVVNGVLFAGSVSAN 373 (417)
Q Consensus 348 ~~~--~~~~~~p~~~~~~~v~~~~~~g~ 373 (417)
..- ...-.+-.+..+|.|.+|+..|.
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~Gd 452 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGD 452 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCc
Confidence 221 12334556688899999999988
No 197
>PRK02888 nitrous-oxide reductase; Validated
Probab=32.99 E-value=6.4e+02 Score=26.99 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=37.4
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCc
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGR 163 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~ 163 (417)
+.+.++|.++-++.|+..+++.+. .+..+| .++.+|+.+.+.|. ...+.-++..+-.
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd-~v~~sp--dGk~afvTsyNsE~----------G~tl~em~a~e~d 271 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLD-NVDTDY--DGKYAFSTCYNSEE----------GVTLAEMMAAERD 271 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcc-cceECC--CCCEEEEeccCccc----------CcceeeeccccCc
Confidence 889999999999999999876442 244444 35567776544333 2456666654433
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=32.19 E-value=5.3e+02 Score=25.79 Aligned_cols=55 Identities=7% Similarity=0.008 Sum_probs=33.5
Q ss_pred cccccceeeeEEEeCCceeeCcEEECCEEEEec-cCCcEEEEECCCCccceEeecc
Q 039692 23 VTVRNLRLRWSFYAGKDISATPAVANGVVYFPS-WNGYLYAVNAFNGALIWEQNLS 77 (417)
Q Consensus 23 ~~~~~~~~~W~~~~~~~~~~~p~~~~g~v~v~~-~~g~l~ald~~tG~~~W~~~~~ 77 (417)
.|+.+++.+=+..-++.+.+.-.-.+|..++++ .|.+|..+|+++|+++++....
T Consensus 159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred EeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 333444433333323334444344566666554 5789999999999999998443
No 199
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.06 E-value=5.4e+02 Score=25.89 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=51.4
Q ss_pred cCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEe--cCCeeeeEEEEEccc
Q 039692 216 SSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTIS--TNGRFRDVVVAVQKS 293 (417)
Q Consensus 216 ~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~--~~G~~~~~v~~~~~~ 293 (417)
..++.+..++..|. +|.++-..+.. ..|-+.|+. .|| +.++..+.|
T Consensus 328 V~Gs~dr~i~~wdl-Dgn~~~~W~gv----------------------------r~~~v~dlait~Dg---k~vl~v~~d 375 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDL-DGNILGNWEGV----------------------------RDPKVHDLAITYDG---KYVLLVTVD 375 (519)
T ss_pred EecCCCCcEEEecC-Ccchhhccccc----------------------------ccceeEEEEEcCCC---cEEEEEecc
Confidence 34566788888885 47663222211 234555544 454 467777788
Q ss_pred ceEEEEECCCCcEEEEeecCCCCCCCcceecccccCCeEEEEecc-CCceeeeecCC
Q 039692 294 GFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVN-NDRIIWSTADP 349 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~-~~~~~W~~~~~ 349 (417)
.++..++.++-..+-...... +-.++.+.-+ +.+...+.. -.-.+|..+..
T Consensus 376 ~~i~l~~~e~~~dr~lise~~----~its~~iS~d-~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISEEQ----PITSFSISKD-GKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cceeeechhhhhhhccccccC----ceeEEEEcCC-CcEEEEEcccCeeEEeecchh
Confidence 888888887643332222110 0122233334 444444444 45678987743
No 200
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=32.00 E-value=4.1e+02 Score=25.69 Aligned_cols=20 Identities=25% Similarity=0.684 Sum_probs=16.0
Q ss_pred EEEEEcccceEEEEECCCCcE
Q 039692 286 VVVAVQKSGFAWAFDRDSGDI 306 (417)
Q Consensus 286 ~v~~~~~~G~l~ald~~tG~~ 306 (417)
.+|+..+.|+|+.++ .+|..
T Consensus 14 ~l~v~e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 14 RLLVAERSGRIWVVD-KDGSL 33 (331)
T ss_dssp CEEEEETTTEEEEEE-TTTEE
T ss_pred cEEEEeCCceEEEEe-CCCcC
Confidence 467788899999999 66765
No 201
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=31.96 E-value=4.5e+02 Score=26.67 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=33.6
Q ss_pred eeEEEEEcccceEEEEEC-CCCcEEEEeecCCCCCCCcceecccccCCeEEEEeccCC
Q 039692 284 RDVVVAVQKSGFAWAFDR-DSGDIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNND 340 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~-~tG~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~ 340 (417)
++++.+... +.+++++. ++-|++|+.+.. +.....-..++.+|+...+.+
T Consensus 149 ~nvL~i~~~-~git~yn~~e~~k~vw~~~fn------GsyvdaRlynG~lYiv~rk~~ 199 (603)
T COG4880 149 GNVLAIGEV-GGITLYNLYESSKKVWVYNFN------GSYVDARLYNGELYIVARKSS 199 (603)
T ss_pred CcEEEEEEe-CCEEEEEeccccceeEEEecC------CceeeeeeeCCEEEEEEcccC
Confidence 455555544 45778887 889999999973 223233357889998877553
No 202
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=30.95 E-value=5.2e+02 Score=25.34 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=23.6
Q ss_pred CcEEECCEEEEecc--CCcEEEEECCCCccceEeec
Q 039692 43 TPAVANGVVYFPSW--NGYLYAVNAFNGALIWEQNL 76 (417)
Q Consensus 43 ~p~~~~g~v~v~~~--~g~l~ald~~tG~~~W~~~~ 76 (417)
..++.++.||+... ...++.+|.++-+-.|+.-.
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~ 68 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIA 68 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECC
Confidence 34567999998542 35688999876566787543
No 203
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=30.94 E-value=4.9e+02 Score=25.02 Aligned_cols=103 Identities=13% Similarity=-0.031 Sum_probs=55.8
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccccCC---cce--eeEEeeeeeEEEEEecCCCceeeeeecCCCCCcceee
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGL---SGT--GIVVNVTVAVVVAVSRSNGELVWSTQIDPRPRSQITM 122 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~---~p~--~~v~~~~v~~l~ald~~tG~~~W~~~~~~~~~~~~~~ 122 (417)
+..+|.++-+|.|..+|..+|+..---.-...+.+ .+. .++..+-...+-..|..+-...=..+... -..
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-----kVy 139 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-----KVY 139 (323)
T ss_pred CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-----eEE
Confidence 45899999999999999988875321111111110 000 01222222666666654311111111110 112
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceee
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTY 169 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~ 169 (417)
+..+.+++++||.. +..+..+|.++-+.-.+..
T Consensus 140 ~~~v~g~~LvVg~~--------------~r~v~iyDLRn~~~~~q~r 172 (323)
T KOG1036|consen 140 CMDVSGNRLVVGTS--------------DRKVLIYDLRNLDEPFQRR 172 (323)
T ss_pred EEeccCCEEEEeec--------------CceEEEEEcccccchhhhc
Confidence 23356888999887 4899999998776665433
No 204
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=29.87 E-value=4.9e+02 Score=25.55 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=57.3
Q ss_pred cccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEccc
Q 039692 214 CISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKS 293 (417)
Q Consensus 214 ~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~ 293 (417)
.+..++.+..+..+|++.|+.+=-.+ +++. ++-.+..| ++.|+.+..|
T Consensus 372 lvVSGSSDntIRlwdi~~G~cLRvLe--GHEe---------------------------LvRciRFd---~krIVSGaYD 419 (499)
T KOG0281|consen 372 LVVSGSSDNTIRLWDIECGACLRVLE--GHEE---------------------------LVRCIRFD---NKRIVSGAYD 419 (499)
T ss_pred EEEecCCCceEEEEeccccHHHHHHh--chHH---------------------------hhhheeec---Cceeeecccc
Confidence 35567788899999999998763222 2221 11122222 4578888899
Q ss_pred ceEEEEECCCCcEEEEeec----CC-CCCCCcceecccccCCeEEEEeccCCceeeeecC
Q 039692 294 GFAWAFDRDSGDIIWFKLA----GP-GGREGGGVWGAATDGRRVYTNIVNNDRIIWSTAD 348 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~~----~~-~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~ 348 (417)
|++..-|..++..---... -. .... +..+...+|+-++.....++.-++|.+..
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hs-gRVFrLQFD~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHS-GRVFRLQFDEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhcc-ceeEEEeecceEEEeccCCCeEEEEEcCC
Confidence 9888777665532100000 00 0001 22334556666676667777788898764
No 205
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.53 E-value=1.5e+02 Score=27.57 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=26.6
Q ss_pred cCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeec
Q 039692 128 MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYML 171 (417)
Q Consensus 128 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~ 171 (417)
.|.+||..-+ .++++.+|+.|||++=++.+.
T Consensus 222 eG~L~Va~~n-------------g~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 222 EGNLYVATFN-------------GGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred CCcEEEEEec-------------CcEEEEECCCCCcEEEEEEcC
Confidence 5679988876 689999999999999888873
No 206
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=28.76 E-value=1.5e+02 Score=27.79 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=40.4
Q ss_pred CcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEE--ecCCeeeeEEEEE
Q 039692 213 QCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTI--STNGRFRDVVVAV 290 (417)
Q Consensus 213 ~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~--~~~G~~~~~v~~~ 290 (417)
.++..++..+.++.||+..=+++-+.+.+.. |+.... ..+ ..+-.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsv----------------------------Pv~i~~~G~~d-evdyRI~Va 246 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSV----------------------------PVFISVSGQYD-EVDYRIVVA 246 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCC----------------------------ceEEEEEeeee-ccceEEEEE
Confidence 3566778899999999998888877776543 222111 111 014578899
Q ss_pred cccceEEEEE
Q 039692 291 QKSGFAWAFD 300 (417)
Q Consensus 291 ~~~G~l~ald 300 (417)
++||.+|.|-
T Consensus 247 ~Rdg~iy~ir 256 (257)
T PF14779_consen 247 CRDGKIYTIR 256 (257)
T ss_pred eCCCEEEEEe
Confidence 9999999874
No 207
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=28.33 E-value=4.1e+02 Score=27.39 Aligned_cols=50 Identities=12% Similarity=-0.096 Sum_probs=26.0
Q ss_pred EeccCCcEEEEECCCCccceEeec--cc---ccCCcce---eeEEeeeeeEEEEEecC
Q 039692 53 FPSWNGYLYAVNAFNGALIWEQNL--SK---LTGLSGT---GIVVNVTVAVVVAVSRS 102 (417)
Q Consensus 53 v~~~~g~l~ald~~tG~~~W~~~~--~~---~~~~~p~---~~v~~~~v~~l~ald~~ 102 (417)
..+.+|.|...|...-.++.+..- .. .+..+|. .++.-|+..+|+-+|..
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 445677788778644444433221 11 1222332 12344556899999964
No 208
>PRK02888 nitrous-oxide reductase; Validated
Probab=28.23 E-value=7.6e+02 Score=26.41 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=72.0
Q ss_pred cCccccccceeeeEEEeCCce---eeCcEEECCEEEEecc----CCcEEEEECCCCccceEeecccccCCcceeeEEee-
Q 039692 20 INPVTVRNLRLRWSFYAGKDI---SATPAVANGVVYFPSW----NGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV- 91 (417)
Q Consensus 20 i~~~~~~~~~~~W~~~~~~~~---~~~p~~~~g~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~- 91 (417)
+...+.++.++.|+..+++.. ..+| .++.+|+++. ...+..+++.+-..+..+........ +.++
T Consensus 217 vSvID~etmeV~~qV~Vdgnpd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~-----vkdGK 289 (635)
T PRK02888 217 FTAVDAETMEVAWQVMVDGNLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEA-----VKAGK 289 (635)
T ss_pred EEEEECccceEEEEEEeCCCcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHh-----hhCCC
Confidence 455566788899999988643 3343 5667888863 23566666544332333333221111 1122
Q ss_pred --ee--eEEEEEecCC----C-ceeeeeecCCCCCcceeeceeEEcCe-EEEEeCCccCccccCcccCCCceEEEEeCCC
Q 039692 92 --TV--AVVVAVSRSN----G-ELVWSTQIDPRPRSQITMSGSVYMGA-FYVGLSSLEEALPADQCCTFRGSLAKLDVRN 161 (417)
Q Consensus 92 --~v--~~l~ald~~t----G-~~~W~~~~~~~~~~~~~~sp~v~~~~-v~v~~~~~~~~~~~~~~~~~~g~l~ald~~t 161 (417)
++ +++-.+|..+ | +++-.++++..+.+ +..+| +++ +|+...- +..+-.+|.++
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG-V~vSP---DGkylyVankl-------------S~tVSVIDv~k 352 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHG-VNTSP---DGKYFIANGKL-------------SPTVTVIDVRK 352 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECCCCccc-eEECC---CCCEEEEeCCC-------------CCcEEEEEChh
Confidence 22 5688999888 4 66666666655433 55566 555 5554432 56888999987
Q ss_pred Cceece
Q 039692 162 GRIIWQ 167 (417)
Q Consensus 162 G~~~W~ 167 (417)
-+.+..
T Consensus 353 ~k~~~~ 358 (635)
T PRK02888 353 LDDLFD 358 (635)
T ss_pred hhhhhh
Confidence 776543
No 209
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=28.09 E-value=6.4e+02 Score=26.12 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=66.9
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee-------eeeEEEEEecCCCceeeeeecCCCCCcce
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV-------TVAVVVAVSRSNGELVWSTQIDPRPRSQI 120 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~-------~v~~l~ald~~tG~~~W~~~~~~~~~~~~ 120 (417)
....|.+..+|.|...|+.+-.+.=+++-.. -+++.+.+..+| ....|.|.|+.+|+++=++++..... .+
T Consensus 521 akvcFsccsdGnI~vwDLhnq~~VrqfqGht-DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIf-SL 598 (705)
T KOG0639|consen 521 AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIF-SL 598 (705)
T ss_pred cceeeeeccCCcEEEEEcccceeeecccCCC-CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhe-ec
Confidence 3456666678999999998766654443321 122222222233 34899999999999998888754332 23
Q ss_pred eeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeee
Q 039692 121 TMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYM 170 (417)
Q Consensus 121 ~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~ 170 (417)
...|. ++=|.+|..+ +.+..+.. +|..+.+...
T Consensus 599 g~cP~--~dWlavGMen--------------s~vevlh~-skp~kyqlhl 631 (705)
T KOG0639|consen 599 GYCPT--GDWLAVGMEN--------------SNVEVLHT-SKPEKYQLHL 631 (705)
T ss_pred ccCCC--ccceeeeccc--------------CcEEEEec-CCccceeecc
Confidence 44553 6678888875 67777775 4777766554
No 210
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=27.78 E-value=3.8e+02 Score=25.71 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=25.9
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEeec
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKLA 312 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~~ 312 (417)
+.+|+.++.|.+++..|.++|+.+.+.+.
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~ 130 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKG 130 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhcc
Confidence 46888899999999999999999988875
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.75 E-value=1.2e+02 Score=30.70 Aligned_cols=68 Identities=18% Similarity=0.079 Sum_probs=46.9
Q ss_pred CCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEeecCC----CCCCCcceecccccCCeEEEEeccCC
Q 039692 270 EAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFKLAGP----GGREGGGVWGAATDGRRVYTNIVNND 340 (417)
Q Consensus 270 ~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~----~~~~g~~~~~~~~~~~~vy~~~~~~~ 340 (417)
..|.-.+.+.+| .++.++++.|+|.+||-.|+++..+..+.. -.++-...+..++-.+.+|+-|.++.
T Consensus 130 FGPY~~~ytrnG---rhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNG---RHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT 201 (545)
T ss_pred cCCeeeeecCCc---cEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc
Confidence 467777777776 478889999999999999999999887631 11222233333344567777766554
No 212
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=27.64 E-value=5.5e+02 Score=26.26 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=15.8
Q ss_pred eEEEEEcc-cceEEEEECCCCc
Q 039692 285 DVVVAVQK-SGFAWAFDRDSGD 305 (417)
Q Consensus 285 ~~v~~~~~-~G~l~ald~~tG~ 305 (417)
+.+++..+ .|+|+.++..+++
T Consensus 41 G~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 41 NQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred CeEEEEEecCCEEEEEeCCCCc
Confidence 35777777 5999999877764
No 213
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=27.12 E-value=1.8e+02 Score=24.30 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=44.3
Q ss_pred ECCEEEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEee----e-e---eEEEEEecCCCceeeeee
Q 039692 47 ANGVVYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNV----T-V---AVVVAVSRSNGELVWSTQ 111 (417)
Q Consensus 47 ~~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~----~-v---~~l~ald~~tG~~~W~~~ 111 (417)
..+.|++++. ..|.|+|..+-.-++.+++.+...+.-++.+... + + -.|+.||.+--++.|...
T Consensus 63 ~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 63 GRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CcCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 4668999886 5899999999999998888765442222211111 1 1 789999977667888764
No 214
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=26.92 E-value=6.4e+02 Score=25.05 Aligned_cols=121 Identities=14% Similarity=0.270 Sum_probs=67.9
Q ss_pred CCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEc
Q 039692 212 DQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQ 291 (417)
Q Consensus 212 ~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~ 291 (417)
...+|..+++..|...|.++|+.+-+...+..- . | +.-.|. -++|..++
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl----~--------~---------i~~~~~----------~~Ll~~gs 319 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSL----N--------C---------ISYSPL----------SKLLASGS 319 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecCcce----e--------E---------eecccc----------cceeeecC
Confidence 345678889999999999999998766654321 1 1 011221 35778888
Q ss_pred ccceEEEEECCCC--cEEEEeecCCCCCCCcceecccccCCeEEEEeccCCceeeeecCCCCCCCccce---eeeCCeEE
Q 039692 292 KSGFAWAFDRDSG--DIIWFKLAGPGGREGGGVWGAATDGRRVYTNIVNNDRIIWSTADPSNETAHGPV---TVVNGVLF 366 (417)
Q Consensus 292 ~~G~l~ald~~tG--~~lW~~~~~~~~~~g~~~~~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~---~~~~~~v~ 366 (417)
.+.++...|+.+| ++.=+.-.++....-...+.| .+...+.-...++.-.+|..... .+|+ .-+++.||
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp-~~~~~~~S~S~D~t~klWDvRS~-----k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP-TNEFQLVSGSYDNTVKLWDVRST-----KAPLYDIAGHNDKVL 393 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCC-CCceEEEEEecCCeEEEEEeccC-----CCcceeeccCCceEE
Confidence 8999999999885 443333332211110111111 12233333444555788987643 2233 24456666
Q ss_pred ecc
Q 039692 367 AGS 369 (417)
Q Consensus 367 ~~~ 369 (417)
..+
T Consensus 394 ~vd 396 (423)
T KOG0313|consen 394 SVD 396 (423)
T ss_pred EEe
Confidence 543
No 215
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=26.80 E-value=5.2e+02 Score=24.01 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=25.5
Q ss_pred ceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCcee-ce
Q 039692 123 SGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRII-WQ 167 (417)
Q Consensus 123 sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~-W~ 167 (417)
.-+|.++.+|.-..+ ...|..+|.++++.. ++
T Consensus 73 G~vVYngslYY~~~~-------------s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 73 GHVVYNGSLYYNKYN-------------SRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CeEEECCcEEEEecC-------------CceEEEEECcCCcEEEEE
Confidence 346789999987664 578999999999988 54
No 216
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.01 E-value=2.8e+02 Score=27.28 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=58.8
Q ss_pred eeEEEEE--cccceEEEEECCCCcEEEEeecCCCCCCCccee--cccccCCeEEEEeccCCceeeeecCCCCCCCcccee
Q 039692 284 RDVVVAV--QKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVW--GAATDGRRVYTNIVNNDRIIWSTADPSNETAHGPVT 359 (417)
Q Consensus 284 ~~~v~~~--~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~--~~~~~~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~ 359 (417)
++.+|++ +.....|.||++....-|+.... +.|...- ..++-++.+|+....+. ...+.|.+
T Consensus 46 g~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~---FpG~~rnqa~~a~~~~kLyvFgG~Gk-----------~~~~~~~~ 111 (381)
T COG3055 46 GDTVYVGLGSAGTAFYVLDLKKPGKGWTKIAD---FPGGARNQAVAAVIGGKLYVFGGYGK-----------SVSSSPQV 111 (381)
T ss_pred cceEEEEeccCCccceehhhhcCCCCceEccc---CCCcccccchheeeCCeEEEeecccc-----------CCCCCceE
Confidence 3466665 45678999999999999998763 3333332 23567888999865443 11145666
Q ss_pred eeCCeEEeccCCCC---------CCeecccccccCC-eEEEecCe
Q 039692 360 VVNGVLFAGSVSAN---------GSTVYGGVPASYG-CIYLGNGY 394 (417)
Q Consensus 360 ~~~~~v~~~~~~g~---------g~~~~~sp~~~~g-~lyv~~~~ 394 (417)
..+.+.|=++.+.+ | ..=++....++ +||+-.|+
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGv 155 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGV 155 (381)
T ss_pred eeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccc
Confidence 77777776666655 2 11122233344 88885554
No 217
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=25.61 E-value=8.5e+02 Score=26.10 Aligned_cols=14 Identities=29% Similarity=0.639 Sum_probs=11.0
Q ss_pred EECCCCceEEEecC
Q 039692 227 LDIDSGRIAWAKPL 240 (417)
Q Consensus 227 ld~~tG~~~W~~~~ 240 (417)
+|.+.+++.|....
T Consensus 10 v~~~~~~~~w~~t~ 23 (631)
T PF12234_consen 10 VDTESNKIEWLLTS 23 (631)
T ss_pred EcCCCCeEEEEEEE
Confidence 58888999997653
No 218
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.45 E-value=7e+02 Score=26.98 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=17.5
Q ss_pred eeEEEEEcccceEEEEECCCCcE
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDI 306 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~ 306 (417)
..+++.+..|+.+++.|..++..
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred hhheeecCCCceEEEEEcccCch
Confidence 35677778888888888887765
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=24.90 E-value=6.3e+02 Score=24.35 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=30.1
Q ss_pred eEEEEEc-ccceEEEEECC--CCcEEEEeecC--CCCCCCc-ce--ecccccCCeEEEEeccCC
Q 039692 285 DVVVAVQ-KSGFAWAFDRD--SGDIIWFKLAG--PGGREGG-GV--WGAATDGRRVYTNIVNND 340 (417)
Q Consensus 285 ~~v~~~~-~~G~l~ald~~--tG~~lW~~~~~--~~~~~g~-~~--~~~~~~~~~vy~~~~~~~ 340 (417)
+.+|+.. .++.|.+++.. +|+........ |....+. .. ..+..+++.||+.+....
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 4666664 46677777777 77655444332 2222222 11 123446788999875543
No 220
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=24.51 E-value=5.6e+02 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=19.5
Q ss_pred cCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceece
Q 039692 128 MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQ 167 (417)
Q Consensus 128 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~ 167 (417)
++.+|--.. .++||-+|+.||.--..
T Consensus 38 ~G~LYgl~~--------------~g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 38 NGQLYGLGS--------------TGRLYTINPATGAATPV 63 (236)
T ss_pred CCCEEEEeC--------------CCcEEEEECCCCeEEEe
Confidence 677776544 48999999999985433
No 221
>PLN02153 epithiospecifier protein
Probab=23.14 E-value=6.7e+02 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=22.8
Q ss_pred ceEEEEECCCCcEEEEeecCCCC-CCCcceecccccCCeEEEEecc
Q 039692 294 GFAWAFDRDSGDIIWFKLAGPGG-REGGGVWGAATDGRRVYTNIVN 338 (417)
Q Consensus 294 G~l~ald~~tG~~lW~~~~~~~~-~~g~~~~~~~~~~~~vy~~~~~ 338 (417)
..++++|+++. .|+.-...+. ...+.....++.++.||+....
T Consensus 217 ~~v~~yd~~~~--~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASG--KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCC--cEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 45889998754 4876421000 0112222344566788887553
No 222
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=22.69 E-value=1.9e+02 Score=18.70 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=20.3
Q ss_pred CcEEECCEEEEeccCCcEEEEECCC
Q 039692 43 TPAVANGVVYFPSWNGYLYAVNAFN 67 (417)
Q Consensus 43 ~p~~~~g~v~v~~~~g~l~ald~~t 67 (417)
...+.++.+|++...+.|..+|..+
T Consensus 6 ~v~v~g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 6 DVAVSGNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEECCEEEEEeCCCCEEEEECCC
Confidence 3567799999998888899999754
No 223
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.59 E-value=6.5e+02 Score=24.88 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEeccCCcEEEEECCCCccceEeecccccCCcceeeEEeeee---eEEEEEecCCCceeeeeecCCCCCcceeeceeEE
Q 039692 51 VYFPSWNGYLYAVNAFNGALIWEQNLSKLTGLSGTGIVVNVTV---AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVY 127 (417)
Q Consensus 51 v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~~~v~~~~v---~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~ 127 (417)
++-++.||.|.-.|+.+-+.+|.++... |.+.+..+ ..++|=|-+|=+. |+++.++. -++.
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~-------G~V~Gi~v~~~~~~tvgdDKtvK~-wk~~~~p~--------~til 145 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRTFKAHE-------GLVRGICVTQTSFFTVGDDKTVKQ-WKIDGPPL--------HTIL 145 (433)
T ss_pred hhccccCceEEEEehhhhhhhheeeccc-------CceeeEEecccceEEecCCcceee-eeccCCcc--------eeee
Q ss_pred cCeEEEEeCCccCccccCcccCCCceEEEEeCCCC--ceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCC
Q 039692 128 MGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNG--RIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQT 205 (417)
Q Consensus 128 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~ 205 (417)
++.+|.+.. ...--..=+..| -.+|..+. -.|.-+-..+..+...-
T Consensus 146 g~s~~~gId--------------h~~~~~~FaTcGe~i~IWD~~R------------------~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 146 GKSVYLGID--------------HHRKNSVFATCGEQIDIWDEQR------------------DNPVSSMSWGADSISSV 193 (433)
T ss_pred ccccccccc--------------cccccccccccCceeeeccccc------------------CCccceeecCCCceeEE
Q ss_pred CCCCCCCCcccCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeee
Q 039692 206 TKPTHPDQCISSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRD 285 (417)
Q Consensus 206 ~~p~~~~~~v~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~ 285 (417)
..--+....+..+..++.++.+|..+++++=+....... |..|+... .-
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT----------N~IswnPe---------------------af 242 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT----------NTICWNPE---------------------AF 242 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceeeeeccc----------cceecCcc---------------------cc
Q ss_pred EEEEEcccceEEEEE
Q 039692 286 VVVAVQKSGFAWAFD 300 (417)
Q Consensus 286 ~v~~~~~~G~l~ald 300 (417)
...++++|-.||-+|
T Consensus 243 nF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYD 257 (433)
T ss_pred ceeeccccccceehh
No 224
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.40 E-value=8e+02 Score=24.65 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=68.5
Q ss_pred CceEEEEeCCCCceeceeeecCCCCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCCeEEEEECC
Q 039692 151 RGSLAKLDVRNGRIIWQTYMLPDNGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYANSIVALDID 230 (417)
Q Consensus 151 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~~l~ald~~ 230 (417)
+.+|..+|.++++++-..++..... +++... ....+...+.+..+-.+|..
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vt----------------Sl~ls~-------------~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVT----------------SLDLSM-------------DGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred ccceEEEeccCCceeeEeecCccee----------------eEeecc-------------CCeEEeeecCCCceeeeecc
Confidence 7889999999999887777632110 111110 11112334567788899999
Q ss_pred CCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccceEEEEECCCCcEEEEe
Q 039692 231 SGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 231 tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~l~ald~~tG~~lW~~ 310 (417)
+-+++=-+...... |.. | -+.+++ ..+ +.++.+++.||.+|.-+..+||+.-..
T Consensus 372 t~eI~~~~sA~g~k-------------~as------D--wtrvvf--Spd---~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFK-------------CAS------D--WTRVVF--SPD---GSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred cccEEEEeeccccc-------------ccc------c--cceeEE--CCC---CceeeeccCCCcEEEEEccCceEEEEe
Confidence 88887766654321 111 1 123333 122 568888999999999999999998877
Q ss_pred ecC
Q 039692 311 LAG 313 (417)
Q Consensus 311 ~~~ 313 (417)
...
T Consensus 426 ~~s 428 (459)
T KOG0288|consen 426 SLS 428 (459)
T ss_pred ccC
Confidence 753
No 225
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.36 E-value=6.5e+02 Score=23.56 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=36.9
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCCccee--cccccCCeEEEEeccCCceeeeecCC
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVW--GAATDGRRVYTNIVNNDRIIWSTADP 349 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~--~~~~~~~~vy~~~~~~~~~~W~~~~~ 349 (417)
...|..++.||+++..-...-..-|+.++-.. +. ...+ +-...++.+-+...+..-.+|+.+..
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~-f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE-FP-DVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCccccccccc-CC-cceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 44566678888887776552235676665211 11 1122 22345677777777777778887654
No 226
>smart00284 OLF Olfactomedin-like domains.
Probab=22.16 E-value=3.9e+02 Score=25.00 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=23.6
Q ss_pred eeEEEeCCceeeCcEEECCEEEEecc-----CCcEEEEECCCCccc
Q 039692 31 RWSFYAGKDISATPAVANGVVYFPSW-----NGYLYAVNAFNGALI 71 (417)
Q Consensus 31 ~W~~~~~~~~~~~p~~~~g~v~v~~~-----~g~l~ald~~tG~~~ 71 (417)
.|.+.....-.+...+.=|+||+... ....+++|..+++..
T Consensus 168 tW~T~~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~ 213 (255)
T smart00284 168 TWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEG 213 (255)
T ss_pred EEEcCCCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccc
Confidence 56665555444455555667776642 123667777766654
No 227
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.95 E-value=9.9e+02 Score=25.56 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=56.8
Q ss_pred cccCCCCCCeEEEEECCCCce--EEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCc--eEEEEecCCeeeeEEEE
Q 039692 214 CISSDIYANSIVALDIDSGRI--AWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAP--MLLTISTNGRFRDVVVA 289 (417)
Q Consensus 214 ~v~~~~~~~~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p--~v~~~~~~G~~~~~v~~ 289 (417)
.+..+..+.+++..|.++|.. +=++..... |. ..++| -+..+..+-. +-.|..
T Consensus 132 lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~--------------~s--------l~sG~k~siYSLA~N~t-~t~ivs 188 (735)
T KOG0308|consen 132 LVASGGLDRKIFLWDINTGTATLVASFNNVTV--------------NS--------LGSGPKDSIYSLAMNQT-GTIIVS 188 (735)
T ss_pred eEEecCCCccEEEEEccCcchhhhhhcccccc--------------cc--------CCCCCccceeeeecCCc-ceEEEe
Confidence 344667788999999999944 333322211 11 11111 1122222221 234555
Q ss_pred EcccceEEEEECCCCcEEEEeecCCCCCCCcceeccc-ccCCeEEEEeccCCceeeeecC
Q 039692 290 VQKSGFAWAFDRDSGDIIWFKLAGPGGREGGGVWGAA-TDGRRVYTNIVNNDRIIWSTAD 348 (417)
Q Consensus 290 ~~~~G~l~ald~~tG~~lW~~~~~~~~~~g~~~~~~~-~~~~~vy~~~~~~~~~~W~~~~ 348 (417)
++..+.|...|..+++.+=+... + ..+...-.. -|+.++.-...++.-.+|....
T Consensus 189 Ggtek~lr~wDprt~~kimkLrG-H---TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRG-H---TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred cCcccceEEeccccccceeeeec-c---ccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 67788999999999988776662 1 112222222 2444555555555556666543
No 228
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.78 E-value=7.2e+02 Score=23.90 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=27.3
Q ss_pred CCEEEEeccCCcEEEEECCCCccceEeecccc
Q 039692 48 NGVVYFPSWNGYLYAVNAFNGALIWEQNLSKL 79 (417)
Q Consensus 48 ~g~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 79 (417)
+..|+-++.|.+|+.+|+++|+..-+++....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~ 133 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTS 133 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccc
Confidence 45777778899999999999999999888754
No 229
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.76 E-value=8.6e+02 Score=24.74 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=43.6
Q ss_pred eeEEEEEcccceEEEEECCCCcEEEEeecCCCCCCC-----ccee--cc-cccCCeEEEEec-cCCceeeeecCC
Q 039692 284 RDVVVAVQKSGFAWAFDRDSGDIIWFKLAGPGGREG-----GGVW--GA-ATDGRRVYTNIV-NNDRIIWSTADP 349 (417)
Q Consensus 284 ~~~v~~~~~~G~l~ald~~tG~~lW~~~~~~~~~~g-----~~~~--~~-~~~~~~vy~~~~-~~~~~~W~~~~~ 349 (417)
...++.++.+|.++..+...-+++......++.... ...| ++ ++-+..+++... ++.-.+|++...
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 467788999999999999999999999876432211 1123 22 233444555544 444789998764
No 230
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.31 E-value=7.4e+02 Score=23.80 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=44.9
Q ss_pred cCCCCCCeEEEEECCCCceEEEecCCCCcceeeeccCCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccce
Q 039692 216 SSDIYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLVPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSGF 295 (417)
Q Consensus 216 ~~~~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G~ 295 (417)
..++.++....+|.+..+++-.|+..... | .-.-+++... ++++|++-.|..
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~-------------~------------gitSv~FS~S---GRlLfagy~d~~ 296 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSII-------------C------------GITSVAFSKS---GRLLFAGYDDFT 296 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCccc-------------C------------CceeEEEccc---ccEEEeeecCCc
Confidence 35567788999999999998888743321 1 1112233444 468888878888
Q ss_pred EEEEECCCCcEEEEee
Q 039692 296 AWAFDRDSGDIIWFKL 311 (417)
Q Consensus 296 l~ald~~tG~~lW~~~ 311 (417)
..+-|.-.|+..=...
T Consensus 297 c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 297 CNVWDTLKGERVGVLA 312 (343)
T ss_pred eeEeeccccceEEEee
Confidence 8888877776655444
No 231
>PRK01742 tolB translocation protein TolB; Provisional
Probab=21.28 E-value=8.3e+02 Score=24.39 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPD 173 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~ 173 (417)
..|+..| .+|.-.-.............-+| ++..++..+.... +..|+.+|.++|+..-.......
T Consensus 184 ~~i~i~d-~dg~~~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~----------~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 184 YEVRVAD-YDGFNQFIVNRSSQPLMSPAWSP---DGSKLAYVSFENK----------KSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred EEEEEEC-CCCCCceEeccCCCccccceEcC---CCCEEEEEEecCC----------CcEEEEEeCCCCceEEEecCCCc
Q ss_pred CCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCCCCCC--eEEEEECCCCceEEEecCCCCcceeeecc
Q 039692 174 NGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSDIYAN--SIVALDIDSGRIAWAKPLGGYDIFYFTCL 251 (417)
Q Consensus 174 ~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~~~~~--~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 251 (417)
.. .+++.++.. ..++....++ .|+.+|.++|++.=-.......
T Consensus 250 ~~--------------~~~wSPDG~--------------~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~------- 294 (429)
T PRK01742 250 NG--------------APAFSPDGS--------------RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNN------- 294 (429)
T ss_pred cC--------------ceeECCCCC--------------EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCc-------
Q ss_pred CCCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEcccc--eEEEEECCCCcEEEEeecC-CCCCCCcceeccccc
Q 039692 252 VPNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKSG--FAWAFDRDSGDIIWFKLAG-PGGREGGGVWGAATD 328 (417)
Q Consensus 252 ~~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~G--~l~ald~~tG~~lW~~~~~-~~~~~g~~~~~~~~~ 328 (417)
..|... .+| ..+++..+.+| .+|.++..+++........ ...............
T Consensus 295 ------------------~~~~wS---pDG--~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 295 ------------------TEPSWS---PDG--QSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMIN 351 (429)
T ss_pred ------------------CCEEEC---CCC--CEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEc
Q ss_pred CCeEEEEeccCCceeeeecCCCCCCCccceeeeCCeEEeccCCCC
Q 039692 329 GRRVYTNIVNNDRIIWSTADPSNETAHGPVTVVNGVLFAGSVSAN 373 (417)
Q Consensus 329 ~~~vy~~~~~~~~~~W~~~~~~~~~~~~p~~~~~~~v~~~~~~g~ 373 (417)
...++..+..+++..--.... .....-....+..|++++.++.
T Consensus 352 ~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 352 GDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred CCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC
No 232
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=8e+02 Score=24.16 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=82.0
Q ss_pred eEEEEEecCCCceeeeeecCCCCCcceeeceeEEcCeEEEEeCCccCccccCcccCCCceEEEEeCCCCceeceeeecCC
Q 039692 94 AVVVAVSRSNGELVWSTQIDPRPRSQITMSGSVYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRNGRIIWQTYMLPD 173 (417)
Q Consensus 94 ~~l~ald~~tG~~~W~~~~~~~~~~~~~~sp~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~~W~~~~~~~ 173 (417)
..+..+|.++=+++=.......+ ..+..+| .++.+|+...+. .++.+..+|..++++.=+.+....
T Consensus 96 ~~v~vid~~~~~~~~~~~vG~~P-~~~~~~~--~~~~vYV~n~~~-----------~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPVGLGP-VGLAVDP--DGKYVYVANAGN-----------GNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CeEEEEcCcccceeeEeeeccCC-ceEEECC--CCCEEEEEeccc-----------CCceEEEEeCCCCeEEEEEecCCC
Confidence 67777775555554444433211 1122222 366899987731 147999999999988755444210
Q ss_pred CCCCCCCCCCccccCCCceeecccCcccCCCCCCCCCCCCcccCC-CCCCeEEEEECCCCceEEEecCCCCcceeeeccC
Q 039692 174 NGGKRGGYSGAAVWGSSPAIDVIRRQKQNNQTTKPTHPDQCISSD-IYANSIVALDIDSGRIAWAKPLGGYDIFYFTCLV 252 (417)
Q Consensus 174 ~~~~~~~~~gg~~~~~~pa~d~~~~~~~~~~~~~p~~~~~~v~~~-~~~~~l~ald~~tG~~~W~~~~~~~~~~~~~~~~ 252 (417)
.. ..++++... ++|.. ...+.+..+|. ++..+|+ ......
T Consensus 162 P~--------------~~a~~p~g~---------------~vyv~~~~~~~v~vi~~-~~~~v~~-~~~~~~-------- 202 (381)
T COG3391 162 PT--------------GVAVDPDGN---------------KVYVTNSDDNTVSVIDT-SGNSVVR-GSVGSL-------- 202 (381)
T ss_pred cc--------------eEEECCCCC---------------eEEEEecCCCeEEEEeC-CCcceec-cccccc--------
Confidence 00 123333322 12222 35678889994 4566664 322111
Q ss_pred CCCCCCCCCCCCCCccCCCceEEEEecCCeeeeEEEEEccc---ceEEEEECCCCcEEEEe
Q 039692 253 PNNPDCPPGPNLDADFGEAPMLLTISTNGRFRDVVVAVQKS---GFAWAFDRDSGDIIWFK 310 (417)
Q Consensus 253 ~~~~~c~~~~~~~~~~~~~p~v~~~~~~G~~~~~v~~~~~~---G~l~ald~~tG~~lW~~ 310 (417)
......|....+..+| ..+|+.... +.+..+|..++...+..
T Consensus 203 -------------~~~~~~P~~i~v~~~g---~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 203 -------------VGVGTGPAGIAVDPDG---NRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred -------------cccCCCCceEEECCCC---CEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 0122345555555555 456665433 69999999999998873
No 233
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=20.68 E-value=1.2e+03 Score=25.89 Aligned_cols=112 Identities=13% Similarity=0.228 Sum_probs=62.8
Q ss_pred ceeeCcEEE--CCEEEEeccCCcEEEEECC-CCccceEeecccc-----cCCcce-eeEEee---ee-------eEEEEE
Q 039692 39 DISATPAVA--NGVVYFPSWNGYLYAVNAF-NGALIWEQNLSKL-----TGLSGT-GIVVNV---TV-------AVVVAV 99 (417)
Q Consensus 39 ~~~~~p~~~--~g~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~-----~~~~p~-~~v~~~---~v-------~~l~al 99 (417)
...++.++. .++-||.-.+ .|-.|... .+.+.....+... ....|- .+..++ .+ ..||-+
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~-~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~m 509 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGS-KIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKM 509 (794)
T ss_pred CccceeEeeeccCceEEECCC-cEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEE
Confidence 344555554 5677776543 56677765 5666666554321 112332 112211 21 899999
Q ss_pred ecCCCceeeeeecCCCCCcceeecee-----EEcCeEEEEeCCccCccccCcccCCCceEEEEeCCC-C-ceec
Q 039692 100 SRSNGELVWSTQIDPRPRSQITMSGS-----VYMGAFYVGLSSLEEALPADQCCTFRGSLAKLDVRN-G-RIIW 166 (417)
Q Consensus 100 d~~tG~~~W~~~~~~~~~~~~~~sp~-----v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~t-G-~~~W 166 (417)
|+++||++=..++..... .....|. ......|+|.+ +..|+.+|++- | +++|
T Consensus 510 DLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls--------------~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 510 DLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLS--------------DNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEEC--------------CCceEEeccCCCCCceee
Confidence 999999975555543220 1122221 22456788887 47899999974 3 3454
Done!