Query 039694
Match_columns 235
No_of_seqs 132 out of 437
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05648 PEX11: Peroxisomal bi 100.0 4E-39 8.8E-44 272.9 22.6 195 27-227 1-197 (223)
2 KOG4186 Peroxisomal biogenesis 100.0 9.6E-34 2.1E-38 239.3 20.4 199 27-231 1-204 (233)
3 PF14147 Spore_YhaL: Sporulati 44.0 91 0.002 20.5 6.2 28 152-179 3-30 (52)
4 PRK11677 hypothetical protein; 38.1 2E+02 0.0043 22.7 7.6 19 152-170 5-23 (134)
5 PF06305 DUF1049: Protein of u 22.3 2.4E+02 0.0052 18.6 5.3 28 152-179 27-54 (68)
6 PF08173 YbgT_YccB: Membrane b 19.2 2E+02 0.0043 16.4 3.0 21 151-171 4-24 (28)
7 cd00280 TRFH Telomeric Repeat 17.0 91 0.002 26.2 1.8 27 30-56 43-69 (200)
8 PHA00666 putative protease 16.7 4.6E+02 0.0099 22.7 6.0 45 72-120 162-207 (233)
9 PF07578 LAB_N: Lipid A Biosyn 16.7 2E+02 0.0043 20.2 3.2 22 149-170 29-50 (72)
10 COG0690 SecE Preprotein transl 16.4 3.8E+02 0.0083 18.5 4.7 42 86-129 20-67 (73)
No 1
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=100.00 E-value=4e-39 Score=272.91 Aligned_cols=195 Identities=28% Similarity=0.440 Sum_probs=166.1
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHhcccCC-CChhHhHHHHHHHHhhhhHHHHHHhccchHHHHHHHhcccCCC-
Q 039694 27 LNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLP-ETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSL- 104 (235)
Q Consensus 27 l~~~~~~l~t~~GRDK~lR~lQY~s~l~~~~~~~~-~~~~~~~~~~~l~~~ls~aRk~fRl~k~l~~l~~l~~~~~~~~- 104 (235)
|+++++|+++++||||++|++||+++|++|++.+. ++++..++++++++++|++||+||+||++++++.+.+....+.
T Consensus 1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~ 80 (223)
T PF05648_consen 1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS 80 (223)
T ss_pred CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence 58999999999999999999999999999988654 3678899999999999999999999999999997765422221
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039694 105 SREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEI 184 (235)
Q Consensus 105 ~~~~~~l~~l~~~~~~~Y~~~D~i~wl~~~gi~~~~~~~~~~~~s~~fWl~~lv~si~~~~~~L~~l~~~e~~l~~~~~~ 184 (235)
......+.+++++++++|+++||++|++++|+++.+..+++.++|++||++++++++++++++++.+.+++++.++..
T Consensus 81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~~~~~~~~s~~~W~~~l~~~l~~~~~~l~~~~~~~~~~~~~~-- 158 (223)
T PF05648_consen 81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKSKKKWSRWSNRFWFASLVLSLVRDLRELRRLRQKERSLKKQL-- 158 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--
Confidence 124567777889999999999999999999999998766999999999999999999999999999988877765432
Q ss_pred HhhcCCCchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccc
Q 039694 185 AISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADI 227 (235)
Q Consensus 185 ~~~~~~~~~~~~~~l~~l~~~r~~~~l~lv~d~~D~~i~~~~i 227 (235)
.++++.++.++++++++++...+++++|+||+++|++++
T Consensus 159 ----~~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~l 197 (223)
T PF05648_consen 159 ----KEKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHWL 197 (223)
T ss_pred ----ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222233467889999999999999999999999998
No 2
>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-34 Score=239.29 Aligned_cols=199 Identities=24% Similarity=0.316 Sum_probs=159.0
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHhcccCCCChhHhHHHHHHHHhhhhHHHHHHhccchHHHHHHHhc---ccCC
Q 039694 27 LNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNS---HLDS 103 (235)
Q Consensus 27 l~~~~~~l~t~~GRDK~lR~lQY~s~l~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~fRl~k~l~~l~~l~~~---~~~~ 103 (235)
+|++++|+++++||||+||.+||.|+|++|++. .++|+++++++++++++|.+||+||+||++++++++.+. +.++
T Consensus 1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~-~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~ 79 (233)
T KOG4186|consen 1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLE-AGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGT 79 (233)
T ss_pred CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhc-cCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCC
Confidence 479999999999999999999999999999887 468999999999999999999999999999999966554 2222
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039694 104 LSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIE 183 (235)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~Y~~~D~i~wl~~~gi~~~~~~~~~~~~s~~fWl~~lv~si~~~~~~L~~l~~~e~~l~~~~~ 183 (235)
. .+.+++.+++|+.+.+|+++||+.|++++|+++.+. ++|...+...|.+++..++.++++++..+++ .++-....+
T Consensus 80 ~-~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~~-~~~~~~~~~~w~~sl~l~~~r~~~~~~~~~r-~~~~~k~~~ 156 (233)
T KOG4186|consen 80 D-NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVKS-ERWKISRISLWLLSLGLNLCRDMYEVFELQR-LSSSIKKKT 156 (233)
T ss_pred c-chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccccc
Confidence 2 136788888999999999999999999999999985 8999999999999999999999999555432 221111111
Q ss_pred HHhhcCCCchHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhccccCCC
Q 039694 184 IAISRGDGYKEEEQRMKKLKA--KKLMKKLSIVQDLADGLMALADIRDGK 231 (235)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~l~~--~r~~~~l~lv~d~~D~~i~~~~i~~~~ 231 (235)
.+.++ .++++.+.+++.+. .++.+.++..++.||..+|.+.+..++
T Consensus 157 ~~~~~--~~e~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~ipl~~L~~~k 204 (233)
T KOG4186|consen 157 KSISS--GDEEDREKLQAQQLDQNHRLLLLSADFNAADSALPLGQLGPGK 204 (233)
T ss_pred cCCCC--ccHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhhccCcCc
Confidence 10111 12333444555444 488899999999999999998887654
No 3
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=43.97 E-value=91 Score=20.45 Aligned_cols=28 Identities=11% Similarity=-0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039694 152 AEFIGYIGSISLKFRDLKMILEDEACLA 179 (235)
Q Consensus 152 fWl~~lv~si~~~~~~L~~l~~~e~~l~ 179 (235)
.|.+.++.+|+-+.+-..+..++|++..
T Consensus 3 wWvY~vi~gI~~S~ym~v~t~~eE~~~d 30 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVKTAKEEREID 30 (52)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6999999999999998887777666553
No 4
>PRK11677 hypothetical protein; Provisional
Probab=38.12 E-value=2e+02 Score=22.66 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039694 152 AEFIGYIGSISLKFRDLKM 170 (235)
Q Consensus 152 fWl~~lv~si~~~~~~L~~ 170 (235)
.|+++++.+++.++.-.+.
T Consensus 5 ~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4566777777777765554
No 5
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.31 E-value=2.4e+02 Score=18.58 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039694 152 AEFIGYIGSISLKFRDLKMILEDEACLA 179 (235)
Q Consensus 152 fWl~~lv~si~~~~~~L~~l~~~e~~l~ 179 (235)
+-++|.+++.+..+....+...+.++++
T Consensus 27 ~f~~G~llg~l~~~~~~~~~r~~~~~~~ 54 (68)
T PF06305_consen 27 AFLLGALLGWLLSLPSRLRLRRRIRRLR 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444443
No 6
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=19.18 E-value=2e+02 Score=16.40 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039694 151 WAEFIGYIGSISLKFRDLKMI 171 (235)
Q Consensus 151 ~fWl~~lv~si~~~~~~L~~l 171 (235)
..|++|+.+.+.-.+..-..+
T Consensus 4 faWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478888888877776655443
No 7
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=17.04 E-value=91 Score=26.21 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHh
Q 039694 30 LEAYLAKRDGVDKLLKLSRYATKIILA 56 (235)
Q Consensus 30 ~~~~l~t~~GRDK~lR~lQY~s~l~~~ 56 (235)
++..+..+.-++|.+|++|+.+|+-.+
T Consensus 43 l~~~~~~~a~~~k~l~i~QfLsRI~eG 69 (200)
T cd00280 43 LVGPLKLTATQLKTLRIMQFLSRIAEG 69 (200)
T ss_pred HhccccccccchhHhHHHHHHHHHHcC
Confidence 456677788899999999999998655
No 8
>PHA00666 putative protease
Probab=16.70 E-value=4.6e+02 Score=22.68 Aligned_cols=45 Identities=11% Similarity=0.240 Sum_probs=33.5
Q ss_pred HHHHhhhhHHHHHHhccchHHHH-HHHhcccCCCchHHHHHHHHHHHHHH
Q 039694 72 SFESSVGLSRKAFRLGKFVQDVN-ALRNSHLDSLSREDLILSVIAYGGEG 120 (235)
Q Consensus 72 ~l~~~ls~aRk~fRl~k~l~~l~-~l~~~~~~~~~~~~~~l~~l~~~~~~ 120 (235)
++..+++.+||.|=-|.. +.+. .|...+++++ +. +++++..++.+
T Consensus 162 ~~~enva~AqkAld~fgt-peL~~~L~esGlGNH--Pe-vVr~f~~VGka 207 (233)
T PHA00666 162 KLQENLSAAQRALDQFGT-PELKEYLNKTGLGNH--PE-LVKVFYKAGKA 207 (233)
T ss_pred HHHHHHHHHHHHHHhcCC-HHHHHHHHhccCCCC--HH-HHHHHHHHHHH
Confidence 778899999999887766 4565 7777788888 44 67777666654
No 9
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=16.67 E-value=2e+02 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039694 149 SAWAEFIGYIGSISLKFRDLKM 170 (235)
Q Consensus 149 s~~fWl~~lv~si~~~~~~L~~ 170 (235)
...||.++++.+++.-+|-+.+
T Consensus 29 P~~FW~lSl~Gs~lll~Y~i~r 50 (72)
T PF07578_consen 29 PVAFWYLSLIGSLLLLIYAIIR 50 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999998875
No 10
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=16.40 E-value=3.8e+02 Score=18.55 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=22.8
Q ss_pred hccchHHHH-HHHhcccCCCchHHHHHHH---HH--HHHHHHHHHHHHHH
Q 039694 86 LGKFVQDVN-ALRNSHLDSLSREDLILSV---IA--YGGEGLYYFVEQFI 129 (235)
Q Consensus 86 l~k~l~~l~-~l~~~~~~~~~~~~~~l~~---l~--~~~~~~Y~~~D~i~ 129 (235)
+.+|+.... .+++..|+++ .+.+-.+ +. .+.-.+++.+|.+.
T Consensus 20 ~~~f~~~~~~E~~KV~WPsr--ke~~~~t~~Vl~~v~~~s~~~~~~D~l~ 67 (73)
T COG0690 20 FFNFFKEVRKELKKVVWPTR--KELIRSTLIVLVVVAFFSLFLYGLDQLI 67 (73)
T ss_pred HHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 6777778886 2322222 22 22336777788764
Done!