Query 039694
Match_columns 235
No_of_seqs 132 out of 437
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 21:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g43_E Voltage-dependent L-typ 38.5 56 0.0019 22.5 4.7 28 204-231 32-62 (81)
2 2lxl_A Vacuolar protein sortin 22.7 24 0.00081 28.1 0.7 39 18-56 5-43 (183)
3 2db7_A Hairy/enhancer-OF-split 11.5 1.3E+02 0.0046 19.5 2.1 32 23-54 24-59 (64)
4 3bpo_A Interleukin 13; IL4, IL 10.5 1.1E+02 0.0036 22.7 1.4 30 67-96 91-120 (127)
5 3lb6_A Interleukin-13, IL-13; 9.7 1.2E+02 0.0043 22.5 1.6 23 67-89 109-131 (132)
6 3d8l_A ORF12; lactococcal phag 9.5 2.6E+02 0.0089 18.5 3.0 46 75-124 3-51 (91)
7 1kbh_A ACTR, nuclear receptor 6.9 3.8E+02 0.013 16.3 2.6 25 24-48 7-33 (47)
8 2jvw_A Uncharacterized protein 6.8 2.8E+02 0.0097 19.1 2.3 27 23-49 44-71 (88)
9 3sjr_A Uncharacterized protein 6.1 7.8E+02 0.027 19.0 4.7 48 44-91 95-150 (175)
10 1bde_A VPR protein; AIDS, HIV, 6.1 1.2E+02 0.0039 17.4 -0.0 17 34-50 3-19 (35)
No 1
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=38.47 E-value=56 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=14.8
Q ss_pred HhhhHHHHHHHHHHHHHHHhh---ccccCCC
Q 039694 204 AKKLMKKLSIVQDLADGLMAL---ADIRDGK 231 (235)
Q Consensus 204 ~~r~~~~l~lv~d~~D~~i~~---~~i~~~~ 231 (235)
+.....+-.+-+..+|.++|- ++++.|+
T Consensus 32 ~~i~~iWp~~~~k~lD~lvpp~~~~~lTVGK 62 (81)
T 3g43_E 32 AIIKKIWKRTSMKLLDQVVPPAGDDEVTVGK 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------CCCC
T ss_pred HHHHHHCcccChhhcccccCCCCCCcEeehH
Confidence 333445556668889999887 5555554
No 2
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=22.75 E-value=24 Score=28.12 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.8
Q ss_pred CCCCCChhhHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 039694 18 DSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILA 56 (235)
Q Consensus 18 ~~~~~~~~~l~~~~~~l~t~~GRDK~lR~lQY~s~l~~~ 56 (235)
|..|+.++.+..+..|+....-.|+.--++-|.||+++.
T Consensus 5 ~~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~Cr~yA~ 43 (183)
T 2lxl_A 5 APLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAM 43 (183)
T ss_dssp CCCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCCCChhHHhHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 445555566666778888888888889999999999764
No 3
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=11.45 E-value=1.3e+02 Score=19.47 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHhcCcchHH----HHHHHHHHHHHHH
Q 039694 23 DRDFLNHLEAYLAKRDGVD----KLLKLSRYATKII 54 (235)
Q Consensus 23 ~~~~l~~~~~~l~t~~GRD----K~lR~lQY~s~l~ 54 (235)
+..-+.++.+||++.+|.| .=.|+++....-+
T Consensus 24 f~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~ 59 (64)
T 2db7_A 24 FRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYA 59 (64)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHh
Confidence 4556888999999988887 5667777665543
No 4
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=10.45 E-value=1.1e+02 Score=22.71 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhhhHHHHHHhccchHHHHHH
Q 039694 67 TGRLKSFESSVGLSRKAFRLGKFVQDVNAL 96 (235)
Q Consensus 67 ~~~~~~l~~~ls~aRk~fRl~k~l~~l~~l 96 (235)
++..+-++.-+.-.|++||-|+|-+.|..+
T Consensus 91 IEv~qfik~LL~~~r~~fR~g~f~~~~~~~ 120 (127)
T 3bpo_A 91 IEVAQFVKDLLLHLKKLFREGQFNRNFESI 120 (127)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHHHHHHHHHccCchhccccee
Confidence 456667888899999999999999888743
No 5
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=9.75 E-value=1.2e+02 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhhhHHHHHHhccc
Q 039694 67 TGRLKSFESSVGLSRKAFRLGKF 89 (235)
Q Consensus 67 ~~~~~~l~~~ls~aRk~fRl~k~ 89 (235)
++-.+-++.-+.-.|++||-|+|
T Consensus 109 IEv~qfik~LL~~~r~~fr~g~f 131 (132)
T 3lb6_A 109 IEVAQFVKDLLLHLKKLFREGRF 131 (132)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHHHHccCCC
Confidence 45566677888899999999986
No 6
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=9.50 E-value=2.6e+02 Score=18.52 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=24.7
Q ss_pred HhhhhHHHH-HHhccchHHHH-HHHh-cccCCCchHHHHHHHHHHHHHHHHHH
Q 039694 75 SSVGLSRKA-FRLGKFVQDVN-ALRN-SHLDSLSREDLILSVIAYGGEGLYYF 124 (235)
Q Consensus 75 ~~ls~aRk~-fRl~k~l~~l~-~l~~-~~~~~~~~~~~~l~~l~~~~~~~Y~~ 124 (235)
.++|.+||+ +--||.+-.-+ ++.. +...++ .+..++..+-+++|+.
T Consensus 3 kqlstarkfkmitgkdlfqqqkamdtelkkedg----eitdlmefvqyglyla 51 (91)
T 3d8l_A 3 KQLSTARKFKMITGKDLFQQQKAMDTELKKEDG----EITDLMEFVQYGLYLA 51 (91)
T ss_dssp CCCCHHHHHHHHHSSCHHHHHHHHHHHHHCSSC----CHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhccHHHHHHHHHHhhHHhhccc----cHHHHHHHHHHHHHHH
Confidence 367778875 33456554444 4422 222233 2555666777777765
No 7
>1kbh_A ACTR, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=6.90 E-value=3.8e+02 Score=16.28 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=19.5
Q ss_pred hhhHHHHHHHhcCcc--hHHHHHHHHH
Q 039694 24 RDFLNHLEAYLAKRD--GVDKLLKLSR 48 (235)
Q Consensus 24 ~~~l~~~~~~l~t~~--GRDK~lR~lQ 48 (235)
...+++++.+|+.++ |.+-+=|.+.
T Consensus 7 ~aLl~QL~~~L~~~d~~~LeEiDrALG 33 (47)
T 1kbh_A 7 RALLDQLHTLLSNTDATGLEEIDRALG 33 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 456899999999887 8777777665
No 8
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=6.84 E-value=2.8e+02 Score=19.13 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHhcCcc-hHHHHHHHHHH
Q 039694 23 DRDFLNHLEAYLAKRD-GVDKLLKLSRY 49 (235)
Q Consensus 23 ~~~~l~~~~~~l~t~~-GRDK~lR~lQY 49 (235)
.+|.+....+||.+|+ .|+|+=.+-=|
T Consensus 44 ~~PSikSSLKFLRKTpWAR~KVE~lYL~ 71 (88)
T 2jvw_A 44 KDPSIKSSLKFLRKTDWARERVENIYLK 71 (88)
T ss_dssp SSCCHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHhcCHhHHHHHHHHHHH
Confidence 5788899999999888 89998776444
No 9
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=6.14 E-value=7.8e+02 Score=18.98 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcccCCC--C-hhHhHHH-----HHHHHhhhhHHHHHHhccchH
Q 039694 44 LKLSRYATKIILASSVLPE--T-LPLTGRL-----KSFESSVGLSRKAFRLGKFVQ 91 (235)
Q Consensus 44 lR~lQY~s~l~~~~~~~~~--~-~~~~~~~-----~~l~~~ls~aRk~fRl~k~l~ 91 (235)
=|+++++..|...|...+. + .+....| ..+++.+..+|-+|+=++-++
T Consensus 95 ~RIVsfaT~FF~~yq~qhPd~~~ee~L~~Fm~lIgGGiEqGF~EArdIL~GL~Vle 150 (175)
T 3sjr_A 95 QHLLLGMEILMELYRQQHPDWTAPAIRQAFAPLARAGLERGYQEACQVLRQLNVYT 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccccC
Confidence 4789999999988875432 2 2223333 267788889998888777764
No 10
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=6.05 E-value=1.2e+02 Score=17.45 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=13.2
Q ss_pred hcCcchHHHHHHHHHHH
Q 039694 34 LAKRDGVDKLLKLSRYA 50 (235)
Q Consensus 34 l~t~~GRDK~lR~lQY~ 50 (235)
-+|.+|-+.+.|++|-.
T Consensus 3 GDTw~GveaiiriLQq~ 19 (35)
T 1bde_A 3 GDTWAGVEAIIRILQQL 19 (35)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 35667888999999865
Done!