Query 039694
Match_columns 235
No_of_seqs 132 out of 437
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 21:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uk5a_ a.7.7.1 (A:) BAG-famil 17.9 68 0.0049 21.6 4.0 24 13-36 15-38 (111)
2 d2gnoa1 a.80.1.1 (A:209-306) g 14.8 62 0.0045 20.5 2.9 33 24-57 22-54 (98)
3 d1ik0a_ a.26.1.2 (A:) Interleu 12.1 54 0.004 21.9 2.1 23 67-89 90-112 (113)
4 d2ddha2 a.29.3.2 (A:475-655) P 9.6 2.9E+02 0.021 19.3 7.2 35 110-144 77-113 (181)
5 d1ugoa_ a.7.7.1 (A:) BAG-famil 8.5 1.2E+02 0.0084 19.8 2.8 25 13-37 3-27 (99)
6 d3bqoa1 a.146.1.1 (A:62-265) T 8.2 85 0.0062 23.4 2.1 27 30-56 48-74 (204)
7 d1xl3c1 a.243.1.1 (C:2-92) Tye 8.1 53 0.0038 21.4 0.8 20 33-52 58-77 (91)
8 d1h6pa_ a.146.1.1 (A:) TRF2 {H 8.0 57 0.0042 24.4 1.0 32 25-56 39-71 (203)
9 d1kbha_ a.153.1.1 (A:) Nuclear 7.0 1.8E+02 0.013 16.2 2.6 24 24-47 7-32 (47)
10 d1gm5a1 a.24.21.1 (A:7-105) Re 4.8 4.3E+02 0.032 16.9 5.3 68 24-98 17-91 (99)
No 1
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.88 E-value=68 Score=21.57 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCCCCCCCCCChhhHHHHHHHhcC
Q 039694 13 SKSSTDSKPKDRDFLNHLEAYLAK 36 (235)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~l~t 36 (235)
..+.+...|+.||.+.++-+.+..
T Consensus 15 p~~~~~~~p~~~P~~~ki~~i~~~ 38 (111)
T d1uk5a_ 15 PKSGEAETPPKHPGVLKVEAILEK 38 (111)
T ss_dssp CCCCSSSSCCCCHHHHHHHHHHHH
T ss_pred CCCcCcCCCCCCccHHHHHHHHHH
Confidence 333446667788888776555543
No 2
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=14.77 E-value=62 Score=20.46 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=26.5
Q ss_pred hhhHHHHHHHhcCcchHHHHHHHHHHHHHHHHhc
Q 039694 24 RDFLNHLEAYLAKRDGVDKLLKLSRYATKIILAS 57 (235)
Q Consensus 24 ~~~l~~~~~~l~t~~GRDK~lR~lQY~s~l~~~~ 57 (235)
..+.+-|-...||..|||-++ ++|-..|++.+-
T Consensus 22 k~ff~lfdqv~ntitg~dafl-liq~~~riilhe 54 (98)
T d2gnoa1 22 KEFFALFDQVTNTITGKDAFL-LIQRLTRIILHE 54 (98)
T ss_dssp GGHHHHHHHHHHHSCTHHHHH-HHHHHHHHHHHT
T ss_pred chHHHHHHHHHhhcccchHHH-HHHHHHHHhccc
Confidence 456777788889999999866 788888988753
No 3
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.05 E-value=54 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhhhHHHHHHhccc
Q 039694 67 TGRLKSFESSVGLSRKAFRLGKF 89 (235)
Q Consensus 67 ~~~~~~l~~~ls~aRk~fRl~k~ 89 (235)
++..+-++.-+.-.|++||-++|
T Consensus 90 IEv~qfik~LL~~~r~ifr~~~f 112 (113)
T d1ik0a_ 90 IEVAQFVKDLLLHLKKLFREGRF 112 (113)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHccCCC
Confidence 45566678888999999999987
No 4
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.58 E-value=2.9e+02 Score=19.31 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=26.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHcCCCCCchhhH
Q 039694 110 ILSVIAYGG--EGLYYFVEQFIWLAKSGLIDPKQSRS 144 (235)
Q Consensus 110 ~l~~l~~~~--~~~Y~~~D~i~wl~~~gi~~~~~~~~ 144 (235)
+-.++..++ ++++.+.++..|+-..|.+.++..+.
T Consensus 77 ~k~vL~~L~~LyaL~~i~~~~g~fl~~g~ls~~q~~~ 113 (181)
T d2ddha2 77 VQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQ 113 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCHHHHHH
Confidence 445566554 58999999999999999998764433
No 5
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.55 E-value=1.2e+02 Score=19.81 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=17.0
Q ss_pred CCCCCCCCCCChhhHHHHHHHhcCc
Q 039694 13 SKSSTDSKPKDRDFLNHLEAYLAKR 37 (235)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~l~t~ 37 (235)
+++++|..++.||.+..+-......
T Consensus 3 ~~~~~~~~~~~~~sl~~I~~i~~ev 27 (99)
T d1ugoa_ 3 SGSSGMDMGNQHPSISRLQEIQREV 27 (99)
T ss_dssp CCCCCCCCSCCCTTHHHHHHHHHHH
T ss_pred CCcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4556677888888887776655433
No 6
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.18 E-value=85 Score=23.41 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=21.8
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHh
Q 039694 30 LEAYLAKRDGVDKLLKLSRYATKIILA 56 (235)
Q Consensus 30 ~~~~l~t~~GRDK~lR~lQY~s~l~~~ 56 (235)
++.+++...-+.|++|++|+.+|+--+
T Consensus 48 l~~~~~~~~~~~k~i~i~QfLsRI~eG 74 (204)
T d3bqoa1 48 IHGLSSLTACQLRTIYICQFLTRIAAG 74 (204)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCccccCccchhHHHHHHHHHHHHcC
Confidence 455667777888999999999997654
No 7
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=8.13 E-value=53 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=16.2
Q ss_pred HhcCcchHHHHHHHHHHHHH
Q 039694 33 YLAKRDGVDKLLKLSRYATK 52 (235)
Q Consensus 33 ~l~t~~GRDK~lR~lQY~s~ 52 (235)
..+..++|+|++..+|=+.-
T Consensus 58 ~f~d~e~R~~lL~a~Q~ALD 77 (91)
T d1xl3c1 58 VFSDEEQRQNLLQMCQNAID 77 (91)
T ss_dssp GSSCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHH
Confidence 45678899999999997654
No 8
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.03 E-value=57 Score=24.43 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred hhHHH-HHHHhcCcchHHHHHHHHHHHHHHHHh
Q 039694 25 DFLNH-LEAYLAKRDGVDKLLKLSRYATKIILA 56 (235)
Q Consensus 25 ~~l~~-~~~~l~t~~GRDK~lR~lQY~s~l~~~ 56 (235)
+.+.. ++..++....-+|++|++|+.+|+--+
T Consensus 39 di~eall~~~~~~~~~~~kti~i~QfL~RI~eG 71 (203)
T d1h6pa_ 39 DIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEG 71 (203)
T ss_dssp HHHHHHTTSCCC----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccccccchhhHHHHHHHHHHHHcC
Confidence 34444 346677788889999999999998655
No 9
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.96 E-value=1.8e+02 Score=16.16 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=18.2
Q ss_pred hhhHHHHHHHhcCcc--hHHHHHHHH
Q 039694 24 RDFLNHLEAYLAKRD--GVDKLLKLS 47 (235)
Q Consensus 24 ~~~l~~~~~~l~t~~--GRDK~lR~l 47 (235)
...+++++.+|+.++ |.+-+=|.+
T Consensus 7 ~aLldQL~s~L~~~D~~~LeEiDrAL 32 (47)
T d1kbha_ 7 RALLDQLHTLLSNTDATGLEEIDRAL 32 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHh
Confidence 457899999999777 777666654
No 10
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.79 E-value=4.3e+02 Score=16.89 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=46.7
Q ss_pred hhhHHHHHHHhcC-cchHHHHHHHHHHHHHHHHhcccCCCChhHhHHHHHHHH------hhhhHHHHHHhccchHHHHHH
Q 039694 24 RDFLNHLEAYLAK-RDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFES------SVGLSRKAFRLGKFVQDVNAL 96 (235)
Q Consensus 24 ~~~l~~~~~~l~t-~~GRDK~lR~lQY~s~l~~~~~~~~~~~~~~~~~~~l~~------~ls~aRk~fRl~k~l~~l~~l 96 (235)
.+++|.+-+.+.. ..|+ + +.|+.-.+=-..+ .+++..++++.+-. ++-..|+-.|+.+.++|++.+
T Consensus 17 EdFLd~~e~il~~~~~~k-~---~~El~eeIdDpLl---en~el~~kLqeF~~Yi~~~~~Lp~eR~~kRvk~~~gMIerf 89 (99)
T d1gm5a1 17 EEFLNEVEKMLKNQVNTR-R---IHQLLKELDDPLL---ENKDLEEKLQAFLDYVKEIPNLPEARKRYRIQKSLEMIEKL 89 (99)
T ss_dssp HHHHHHHHHHHTSCCCTT-T---HHHHHHHCCCGGG---GCHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH-H---HHHHHHHhccHhh---cCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccHHHHHHH
Confidence 5678888777776 6777 3 4444444221111 26777778877754 557889999999999999987
Q ss_pred Hh
Q 039694 97 RN 98 (235)
Q Consensus 97 ~~ 98 (235)
|.
T Consensus 90 R~ 91 (99)
T d1gm5a1 90 RS 91 (99)
T ss_dssp HH
T ss_pred HH
Confidence 65
Done!