BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039695
         (605 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/606 (72%), Positives = 517/606 (85%), Gaps = 1/606 (0%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           M K L +NLIF + ++ ++RQNK S  HTK   IQ+LQ+C  + S++  H+ +LKSGFL+
Sbjct: 1   MVKPLNQNLIFRVPSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLN 60

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +TFT NHLIN YVR+++T  A QLF+EM EPNV+S+TSLMAG+I +G+P+ ALL+F KML
Sbjct: 61  DTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKML 120

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            + V PN FTFATV+ ACSMLADL TG++IH+H+E FG Q NLVVCSSL+DMYGKCN+VD
Sbjct: 121 ESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVD 180

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            ARRVFD M  RNVVSWTS+I A+ QNA G  AL++FREFN      PN  MLASVINAC
Sbjct: 181 DARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINAC 240

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           ASLGRLVSGKVAH  V+R G E NDVVASALVDMYAKCG + YSDKVF RI +PSV+ YT
Sbjct: 241 ASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYT 300

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMIVGAAKYGLG+FSLD+F EM+ R IKPNDVTFVGVLHACSHSGLVD+G+++L SM++K
Sbjct: 301 SMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKK 360

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +G++PD KHYTCVVDMLGRTGRLDEA++LAKSIQV+PD G LLWGTLLSASRL+GRVDIA
Sbjct: 361 HGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIA 420

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
           VEAS  LIESNQQVA AYVT+SNTYA+AG+WENVHS+R EMK  G++KEPGCSWVEIRD 
Sbjct: 421 VEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMKHYGVYKEPGCSWVEIRDS 480

Query: 481 TYAFYAGN-ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            Y FYAG+ +L  RGSEV SLLRELER+MKERGYVGG  GLV +DVE+EA+EEIVGLHSE
Sbjct: 481 AYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSE 540

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLALAFGLISIPKG+TIR+MKNLRMCRDCH+ FKLIS+IVERDFVVRDVNRFHHF NGSC
Sbjct: 541 RLALAFGLISIPKGVTIRVMKNLRMCRDCHEAFKLISEIVERDFVVRDVNRFHHFENGSC 600

Query: 600 SCGDFW 605
           +C DFW
Sbjct: 601 TCRDFW 606


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/582 (71%), Positives = 481/582 (82%), Gaps = 3/582 (0%)

Query: 27  CHTKA---HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           C+ +A   H IQQL+ CK  I   S H+ + K G L++T T NHL+N Y+R ++ Q A  
Sbjct: 3   CYHQARAVHIIQQLKNCKDFIFAISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHH 62

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           LFDEM EPNVVS+TSLM+GY+NMG+PQ AL L+ KM  + V PN FT ATVI +CS+LAD
Sbjct: 63  LFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILAD 122

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           L TGK +H H++  G Q NLVVCSSLVDMYGKCNDVDGAR VFD M CRNVVSWT++I  
Sbjct: 123 LKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAG 182

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           +AQN +G+EALE+FREF+    +RPN  MLASVINACASLGRLVSGKV HG V+R G E 
Sbjct: 183 YAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYEL 242

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           NDVVASALVDMYAKCGS  YS+KVF RI NPSV+ YTSMIVGAAKYGLG+ SL+LF EM 
Sbjct: 243 NDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMT 302

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            R + PNDVTFVG+LHACSHSGLVDEG++ L+SM+ K+G++PD +HYTCVVDML R GRL
Sbjct: 303 DRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRL 362

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           DEAYKLAKSI+V+P+ G LLWGTLLS+SRLHGRVD+AVEAS  LIE NQQVA AYVTLSN
Sbjct: 363 DEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSN 422

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
           TY LAGEWEN HSLR+EM+  G+HKEPGCSW+EI+D  Y FYAG+   ERG EV+SLLRE
Sbjct: 423 TYTLAGEWENAHSLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRE 482

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           LER+M ERG VGG TGLVFVDVE E +E+IVGLHSERLALAFGLISIPKG+TIR+MKNLR
Sbjct: 483 LERRMMERGCVGGSTGLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLR 542

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH+ FKLIS IVERDFVVRDVNRFHHF++GSC+C DFW
Sbjct: 543 ICSDCHEAFKLISKIVERDFVVRDVNRFHHFKDGSCTCKDFW 584


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/601 (68%), Positives = 490/601 (81%), Gaps = 5/601 (0%)

Query: 10  IFTLAASSLTRQNKRSSCH----TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTL 65
           + T  +SSL+RQ+K S  H    TKAHF+ +LQ CK L S  S HS ++KSG  ++TF  
Sbjct: 3   LVTSLSSSLSRQHKLSLFHFHTNTKAHFVAKLQTCKDLTSATSTHSNVVKSGLSNDTFAT 62

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           NHLINCY+RL     A++LFDEM   NVVS+TSLMAGY++ GQP +AL LF +M G LV 
Sbjct: 63  NHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVL 122

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           PNEFTFAT+I ACS+LA+L  G++IH  +E  G   NLV CSSL+DMYGKCN VD AR +
Sbjct: 123 PNEFTFATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSLIDMYGKCNHVDEARLI 182

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  RNVVSWTS+I  ++QNAQGH AL++F+EFN+   D+PN  ML S ++ACASLG 
Sbjct: 183 FDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSACASLGS 242

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L SGK+ HGVV+R G E +DV+ASALVDMYAKCG VNYS K+F RI NPSV+ YTSMIVG
Sbjct: 243 LGSGKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVG 302

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
           AAKYGLG  SL LF EM+ R IKPND+TFVGVLHACSHSGLVD+G++ LDSM  KYG+ P
Sbjct: 303 AAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACSHSGLVDKGLELLDSMDGKYGVTP 362

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
           DAKHYTC+ DMLGR GR++EAY+LAKS+QV+ DG  +LWGTLLSASRL+GRVDIA+EASN
Sbjct: 363 DAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGDGYAMLWGTLLSASRLYGRVDIALEASN 422

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +LIESNQQVA AYVTLSN YALAG+WEN H+LRSEMK TG++KEPG SW+EI++ TY F+
Sbjct: 423 RLIESNQQVAGAYVTLSNAYALAGDWENAHNLRSEMKHTGVYKEPGSSWIEIKESTYLFH 482

Query: 486 AGN-ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
           AG+ + + +G E+LSLLRELE +MK RGYVGG  GLVFVDVE+EA+EEIV +HSE+LALA
Sbjct: 483 AGDISKYTQGREILSLLRELEERMKGRGYVGGTKGLVFVDVEEEAKEEIVSMHSEKLALA 542

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLI+ PKG+TIRIMKNLRMCRDCH  FKLISDIVER+ VVRDVNRFHHF+NG C+CGDF
Sbjct: 543 FGLINTPKGVTIRIMKNLRMCRDCHGAFKLISDIVERELVVRDVNRFHHFKNGLCTCGDF 602

Query: 605 W 605
           W
Sbjct: 603 W 603


>gi|297736881|emb|CBI26082.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/606 (68%), Positives = 482/606 (79%), Gaps = 39/606 (6%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           M K L +NLIF + ++ ++RQNK S  HTK   IQ+LQ+C  + S++  H+ +LKSGFL+
Sbjct: 1   MVKPLNQNLIFRVPSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLN 60

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +TFT NHLIN YVR+++T  A QLF+EM EPNV+S+TSLMAG+I +G+P+ ALL+F KML
Sbjct: 61  DTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKML 120

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            + V PN FTFATV+ ACSMLADL TG++IH+H+E FG Q NLVVCSSL+DMYGKCN+VD
Sbjct: 121 ESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVD 180

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            ARRVFD M  RNVVSWTS+I A+ QNA G  AL++FREFN      PN  MLASVINAC
Sbjct: 181 DARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINAC 240

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           ASLGRLVSGKVAH  V+R G E NDVVASALVDMYAKCG + YSDKVF RI +PSV+ YT
Sbjct: 241 ASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYT 300

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMIVGAAKYGLG+FSLD+F EM+ R IKPNDVTFVGVLHACSHSGLVD+G+++L SM++K
Sbjct: 301 SMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKK 360

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +G++PD KHYTCVVDMLGRTGRLDEA++LAKSIQV+PD G LLWGTLLSASRL+GRVDIA
Sbjct: 361 HGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIA 420

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
           VEAS  LIESNQQVA AY                                      IRD 
Sbjct: 421 VEASKWLIESNQQVAAAY--------------------------------------IRDS 442

Query: 481 TYAFYAGN-ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            Y FYAG+ +L  RGSEV SLLRELER+MKERGYVGG  GLV +DVE+EA+EEIVGLHSE
Sbjct: 443 AYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSE 502

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLALAFGLISIPKG+TIR+MKNLRMCRDCH+ FKLIS+IVERDFVVRDVNRFHHF NGSC
Sbjct: 503 RLALAFGLISIPKGVTIRVMKNLRMCRDCHEAFKLISEIVERDFVVRDVNRFHHFENGSC 562

Query: 600 SCGDFW 605
           +C DFW
Sbjct: 563 TCRDFW 568


>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/602 (65%), Positives = 470/602 (78%), Gaps = 1/602 (0%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFT 64
           L RNL F L    L+R+N+R    T  +  + L+ C  LIS  S HS  LK GFL+NT  
Sbjct: 2   LKRNLYFALTRPYLSRENERPFLQTIENLSRHLRNCNDLISSISTHSIALKLGFLNNTVN 61

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124
           +NHLINCYVR +    A QLFDEM  PNVVS+TSLMAGY++ GQP  AL LF +ML + V
Sbjct: 62  VNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSPV 121

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            PN+FTFAT IKACS+L++L  G+  H H+E FG+  N+VVCSSL+DMYGKCNDV  AR 
Sbjct: 122 VPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARG 181

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VF+ M C+N+VSWTS+I A+AQNA G EAL++FREF   S + PN +MLASVI+ACASLG
Sbjct: 182 VFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLG 241

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
           RLVSGKV HG  +  GC+ ++VVAS LVDMYAKCGS++YSDKVFNRISNPSV+ YTSMIV
Sbjct: 242 RLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIV 301

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
             AKYG GR SL LF EM+ +G+KPN +T VGVLHACSHSGL +EG+ +L SMY KYGI+
Sbjct: 302 STAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIM 361

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P+ KHYTCVVDML R G LD+A+ LAKS+ V PD   LLWG LLSASR HGRVDIA EA 
Sbjct: 362 PETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHGRVDIAAEAC 421

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
            QL+ SN+QVA AYVTLSN YA AG+ E  H LR EMKRTG+HKEPGCSW+EI+D +Y F
Sbjct: 422 QQLVNSNRQVAGAYVTLSNVYASAGDMEKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIF 481

Query: 485 YAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLAL 543
           YAG      RG EVL LLREL++KMK+RGYV G+ GLVFVD+E+EA EE V LHSERLAL
Sbjct: 482 YAGEITSCPRGDEVLCLLRELDQKMKDRGYVRGRKGLVFVDIEEEAEEEKVWLHSERLAL 541

Query: 544 AFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603
            FGLISIPKG+TIRIMKNLRMC DCH+ FKLIS+I+ER+FVVRD+NRFHHF+NG C+C  
Sbjct: 542 GFGLISIPKGLTIRIMKNLRMCSDCHEAFKLISEIMEREFVVRDINRFHHFKNGCCTCNG 601

Query: 604 FW 605
           FW
Sbjct: 602 FW 603


>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/602 (65%), Positives = 470/602 (78%), Gaps = 1/602 (0%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFT 64
           L RNL F L    L+R+N+R    T  +  + L+ C  LIS  S HS  LK GFL+NT  
Sbjct: 2   LKRNLYFALTRPYLSRENERPFLQTIENLSRHLRNCNDLISSISTHSIALKLGFLNNTVN 61

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124
           +NHLINCYVR +    A QLFDEM  PNVVS+TSLMAGY++ GQP  AL LF +ML + V
Sbjct: 62  VNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSPV 121

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            PN+FTFAT IKACS+L++L  G+  H H+E FG+  N+VVCSSL+DMYGKCNDV  AR 
Sbjct: 122 VPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARG 181

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VF+ M C+N+VSWTS+I A+AQNA G EAL++FREF   S + PN +MLASVI+ACASLG
Sbjct: 182 VFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLG 241

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
           RLVSGKV HG  +  GC+ ++VVAS LVDMYAKCGS++YSDKVFNRISNPSV+ YTSMIV
Sbjct: 242 RLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIV 301

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
             AKYG GR SL LF EM+ +G+KPN +T VGVLHACSHSGL +EG+ +L SMY KYGI+
Sbjct: 302 STAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIM 361

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P+ KHYTCVVDML R G LD+A+ LAKS+ V PD   LLWG LLSASR HGRVDIA EA 
Sbjct: 362 PETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHGRVDIAAEAC 421

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
            QL+ SN+QVA AYVTLSN YA AG+ E  H LR EMKRTG+HKEPGCSW+EI+D +Y F
Sbjct: 422 QQLVNSNRQVAGAYVTLSNVYASAGDMEKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIF 481

Query: 485 YAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLAL 543
           YAG      RG EVL LLREL++KMK+RGYV G+ GLVFVD+E+EA EE V LHSERLAL
Sbjct: 482 YAGEITSCARGDEVLCLLRELDQKMKDRGYVRGRKGLVFVDIEEEAEEEKVWLHSERLAL 541

Query: 544 AFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603
            FGLISIPKG+TIRIMKNLRMC DCH+ FKLIS+I+ER+FVVRD+NRFHHF+NG C+C  
Sbjct: 542 GFGLISIPKGLTIRIMKNLRMCSDCHEAFKLISEIMEREFVVRDINRFHHFKNGCCTCNG 601

Query: 604 FW 605
           FW
Sbjct: 602 FW 603


>gi|357478705|ref|XP_003609638.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510693|gb|AES91835.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 589

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/594 (65%), Positives = 470/594 (79%), Gaps = 18/594 (3%)

Query: 17  SLTRQNKRS----SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           SL+R +K +      +T AH I +     HL S    H+ ++KSG  ++TFT N+LIN Y
Sbjct: 9   SLSRHHKLTLFSFHTNTNAHNIGKFHTFNHLPSATPTHANVVKSGLSNDTFTTNNLINSY 68

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
           ++L K   A +LFDEM  PNVVS++ LMAGY+  GQP IAL LF +M G LV PNEFTF+
Sbjct: 69  LKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQPNIALCLFHQMQGTLVMPNEFTFS 128

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           T+I ACS+LA+L TG++IH  +E FG++ +LVVCSSL+DMYGKCN VD A+ +FD M  R
Sbjct: 129 TLINACSILANLETGRRIHALVEVFGYRSDLVVCSSLIDMYGKCNRVDEAQMIFDFMWVR 188

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           NVVSWTS+I  ++QN QGH AL++FREFN+   ++PN  ML S + ACASLGRL SGK+ 
Sbjct: 189 NVVSWTSMITTYSQNGQGHLALQLFREFNHIRMNKPNHFMLCSAVTACASLGRLGSGKIT 248

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HGVV+R G + +DVVASALVDMYAKCG V YSDKVF RI NPSVV YTSMIVGAAKYGLG
Sbjct: 249 HGVVIRLGHDASDVVASALVDMYAKCGCVTYSDKVFRRIVNPSVVPYTSMIVGAAKYGLG 308

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
             SL LF EM+ R IKPN +TFVGVLH               +SM  KYG++PDA+HYTC
Sbjct: 309 TLSLRLFQEMVDRRIKPNSITFVGVLHL-------------FNSMNEKYGVMPDARHYTC 355

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           +VDMLGR GR+DEAY+LA+S+QV  +   LLWGTLLSASRLHGRVDIA+EASN++IESNQ
Sbjct: 356 IVDMLGRVGRIDEAYQLAQSVQVGSEDDALLWGTLLSASRLHGRVDIAIEASNRVIESNQ 415

Query: 433 QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN-ALF 491
           QVA AYVTLSNTYALAG+WEN H+LRSEMKRTG++KEPG SW+EI+D TY F+AG+ +  
Sbjct: 416 QVAAAYVTLSNTYALAGDWENAHNLRSEMKRTGVYKEPGSSWIEIKDSTYLFHAGDLSKC 475

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
            +  E+LSLLRELE +MKERG+VG  TGLVFVDVE+EA+EEIV LHSE+LALAFGL++ P
Sbjct: 476 SQKRELLSLLRELEGRMKERGHVGVTTGLVFVDVEEEAKEEIVSLHSEKLALAFGLLNTP 535

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KGITI IMKNLRMCRDCH+ FKLISDIVER+FVVRDVNRFHHF+NGSC+CGDFW
Sbjct: 536 KGITIIIMKNLRMCRDCHEAFKLISDIVEREFVVRDVNRFHHFKNGSCTCGDFW 589


>gi|297804658|ref|XP_002870213.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316049|gb|EFH46472.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/593 (60%), Positives = 451/593 (76%), Gaps = 8/593 (1%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           QN+     TKA  + +L E   L     +H+  LK GF SNTFT+NHL+N YV+LK+   
Sbjct: 16  QNEFFYLKTKAFLVHKLSEPTDLFLTNLLHALTLKLGFASNTFTVNHLVNSYVKLKEINT 75

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACS 139
           AR++FDEM EPNVVS+TS+++GY +MGQPQ AL +FQ+M  +  V PNE+TFA+V KACS
Sbjct: 76  ARKVFDEMCEPNVVSWTSVISGYNDMGQPQTALSMFQEMHEDRSVPPNEYTFASVFKACS 135

Query: 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSW 197
            LA+   GK IH  +E  G + N+VV SSLVDMYGKCNDV+ ARRVFD M    RNVVSW
Sbjct: 136 ALAESRIGKNIHARLEVSGLRRNIVVSSSLVDMYGKCNDVEMARRVFDSMIGYGRNVVSW 195

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQS-RDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           TS+I A+AQNA+GHEA+E+FR FN  S  DRPNQ MLASVINA +SLGRL  G+++HG+V
Sbjct: 196 TSMITAYAQNARGHEAIELFRSFNADSTSDRPNQFMLASVINASSSLGRLQWGQISHGLV 255

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            R G E N+VVA++L+DMYAKCGS+  ++K+F RI   SV++YTSMI+  AK+GLG  +L
Sbjct: 256 TRGGYESNNVVATSLLDMYAKCGSLTCAEKIFFRIRCHSVISYTSMIMAKAKHGLGEAAL 315

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            LF+EM++  IKPN VT +GVLHACSHSGLV+EG++ L+SM  KYG+IPD++HYTCVVDM
Sbjct: 316 QLFDEMVAGRIKPNYVTLLGVLHACSHSGLVNEGLEFLNSMAEKYGVIPDSRHYTCVVDM 375

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR GR+DEAY LAK+I V  + G LLWG LLSA RLHGRV+I  EAS +LI+SNQQV +
Sbjct: 376 LGRFGRVDEAYDLAKTIDVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQQVTS 435

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           AY+ LSN YA+AG WE+  SLR EMKR+G  KE  CSW+E +D  Y F+AG+   +   E
Sbjct: 436 AYIALSNAYAVAGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGE 495

Query: 497 VLSLLRELERKMKERGYVG----GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPK 552
           +   L+ LE +MKERG+ G      +  VFVDV++EA+EE+V LH ERLALA+GL+ +P 
Sbjct: 496 IKRFLKNLENRMKERGHRGSSSMITSSSVFVDVDEEAKEEMVSLHCERLALAYGLLHLPA 555

Query: 553 GITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G TIRIM NLRMCRDCH+ FKLIS+IVER+ VVRDVNRFH F+NGSC+C DFW
Sbjct: 556 GSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDFW 608


>gi|22328675|ref|NP_193307.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75161477|sp|Q8VYH0.1|PP313_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g15720
 gi|18175616|gb|AAL59897.1| unknown protein [Arabidopsis thaliana]
 gi|20465541|gb|AAM20253.1| unknown protein [Arabidopsis thaliana]
 gi|332658240|gb|AEE83640.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 616

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/616 (57%), Positives = 460/616 (74%), Gaps = 11/616 (1%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCH--TKAHFIQQLQECKHLISLASVHSEILKSGF 58
           MKK   +N+    A S    Q K    H  TKA  + +L E  +      +H+  LK GF
Sbjct: 1   MKKGFIQNVHLAPATSLFVPQYKNDFFHLKTKAFLVHKLSESTNAAFTNLLHTLTLKLGF 60

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
            S+TFT+NHL+  YV+LK+   AR+LFDEM EPNVVS+TS+++GY +MG+PQ AL +FQK
Sbjct: 61  ASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQK 120

Query: 119 MLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           M  +  V PNE+TFA+V KACS LA+   GK IH  +E  G + N+VV SSLVDMYGKCN
Sbjct: 121 MHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCN 180

Query: 178 DVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ-SRDRPNQHMLA 234
           DV+ ARRVFD M    RNVVSWTS+I A+AQNA+GHEA+E+FR FN   + DR NQ MLA
Sbjct: 181 DVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLA 240

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           SVI+AC+SLGRL  GKVAHG+V R G E N VVA++L+DMYAKCGS++ ++K+F RI   
Sbjct: 241 SVISACSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCH 300

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           SV++YTSMI+  AK+GLG  ++ LF+EM++  I PN VT +GVLHACSHSGLV+EG+++L
Sbjct: 301 SVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYL 360

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
             M  KYG++PD++HYTCVVDMLGR GR+DEAY+LAK+I+V  + G LLWG LLSA RLH
Sbjct: 361 SLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLH 420

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           GRV+I  EAS +LI+SNQQV +AY+ LSN YA++G WE+  SLR EMKR+G  KE  CSW
Sbjct: 421 GRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACSW 480

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG-----GKTGLVFVDVEDEA 529
           +E +D  Y F+AG+   +   E+   L++LE++MKERG+ G       +  VFVDV++EA
Sbjct: 481 IENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEA 540

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           ++E+V LH ERLALA+GL+ +P G TIRIM NLRMCRDCH+ FKLIS+IVER+ VVRDVN
Sbjct: 541 KDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVN 600

Query: 590 RFHHFRNGSCSCGDFW 605
           RFH F+NGSC+C D+W
Sbjct: 601 RFHCFKNGSCTCRDYW 616


>gi|2244928|emb|CAB10350.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268320|emb|CAB78614.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/616 (56%), Positives = 448/616 (72%), Gaps = 25/616 (4%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCH--TKAHFIQQLQECKHLISLASVHSEILKSGF 58
           MKK   +N+    A S    Q K    H  TKA  + +L E  +      +H+  LK GF
Sbjct: 1   MKKGFIQNVHLAPATSLFVPQYKNDFFHLKTKAFLVHKLSESTNAAFTNLLHTLTLKLGF 60

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
            S+TFT+NHL+  YV+LK+   AR+LFDEM EPNVVS+TS+++GY +MG+PQ AL +FQK
Sbjct: 61  ASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQK 120

Query: 119 MLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           M  +  V PNE+TFA+V KACS LA+   GK IH  +E  G + N+VV SSLVDMYGKCN
Sbjct: 121 MHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCN 180

Query: 178 DVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ-SRDRPNQHMLA 234
           DV+ ARRVFD M    RNVVSWTS+I A+AQNA+GHEA+E+FR FN   + DR NQ MLA
Sbjct: 181 DVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLA 240

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           SVI+AC+SLGRL  GKVAHG+V R G E N VVA++L+DMYAKCGS++ ++K+F RI   
Sbjct: 241 SVISACSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCH 300

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           SV++YTSMI+  AK+GLG  ++ LF+EM++  I PN VT +GVLHACSHSGLV+EG+++L
Sbjct: 301 SVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYL 360

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
             M  KYG++PD++HYTCVVDMLGR GR+DEAY+LAK+I+V  + G LLWG LLSA RLH
Sbjct: 361 SLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLH 420

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           GRV+I  EAS +LI+SNQQV                WE+  SLR EMKR+G  KE  CSW
Sbjct: 421 GRVEIVSEASKRLIQSNQQVT--------------RWEDSESLRLEMKRSGNVKERACSW 466

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG-----GKTGLVFVDVEDEA 529
           +E +D  Y F+AG+   +   E+   L++LE++MKERG+ G       +  VFVDV++EA
Sbjct: 467 IENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEA 526

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           ++E+V LH ERLALA+GL+ +P G TIRIM NLRMCRDCH+ FKLIS+IVER+ VVRDVN
Sbjct: 527 KDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVN 586

Query: 590 RFHHFRNGSCSCGDFW 605
           RFH F+NGSC+C D+W
Sbjct: 587 RFHCFKNGSCTCRDYW 602


>gi|255551705|ref|XP_002516898.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543986|gb|EEF45512.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 406

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/406 (77%), Positives = 356/406 (87%)

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +I A+AQNA+G+EALE+FR+FN   ++R N  MLASVINACASLG+LVSGKVAHG V+RS
Sbjct: 1   MIAAYAQNARGNEALEVFRQFNSLVQERSNHFMLASVINACASLGKLVSGKVAHGAVIRS 60

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G E NDVVASALVDMYAKCG  +YSDKVF +I NPS++ YTSMI GAAKYGLG+ SL LF
Sbjct: 61  GYEVNDVVASALVDMYAKCGCFSYSDKVFRQIPNPSIIPYTSMIAGAAKYGLGKVSLQLF 120

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
            +M+ R IKPNDVTFVGVLHACSHSGLV+EG+QHL+SMY K+GI+PD KHYTCVVDML R
Sbjct: 121 EDMVRRRIKPNDVTFVGVLHACSHSGLVNEGLQHLNSMYGKHGIMPDVKHYTCVVDMLSR 180

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
           +GRLDEAY+LAKSI+V+P  G LLWGTLLSASRL GRVD+AVEAS  LIESNQQVA  YV
Sbjct: 181 SGRLDEAYQLAKSIRVNPSEGALLWGTLLSASRLQGRVDVAVEASKWLIESNQQVAGTYV 240

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLS 499
           TLSNTYALAGEWEN + LRS+MKR G++KEPGCSWVEI+D TY FYAGN   ERG+EVL+
Sbjct: 241 TLSNTYALAGEWENAYYLRSQMKRVGVYKEPGCSWVEIKDSTYVFYAGNLSCERGNEVLN 300

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
            L+ELER+MKERGYVGG  GLVFVDVE EA+EEIV LHSERLALAF L+SIPKGIT+R+M
Sbjct: 301 FLKELERRMKERGYVGGSMGLVFVDVEQEAKEEIVSLHSERLALAFALLSIPKGITVRVM 360

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLRMC+DCH+ FKLIS IVERDFVVRD+NRFHHF NGSCSC DFW
Sbjct: 361 KNLRMCKDCHEAFKLISGIVERDFVVRDINRFHHFDNGSCSCRDFW 406



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 106/202 (52%), Gaps = 8/202 (3%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVW--PNEFTFATVIKACSMLADLITGKQIHTHIET 156
           ++A Y    +   AL +F++   +LV    N F  A+VI AC+ L  L++GK  H  +  
Sbjct: 1   MIAAYAQNARGNEALEVFRQ-FNSLVQERSNHFMLASVINACASLGKLVSGKVAHGAVIR 59

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G++ N VV S+LVDMY KC     + +VF  +   +++ +TS+I   A+   G  +L++
Sbjct: 60  SGYEVNDVVASALVDMYAKCGCFSYSDKVFRQIPNPSIIPYTSMIAGAAKYGLGKVSLQL 119

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH--GVVVRSGCEFNDVVASALVDM 274
           F +   + R +PN      V++AC+  G LV+  + H   +  + G   +    + +VDM
Sbjct: 120 FEDM-VRRRIKPNDVTFVGVLHACSHSG-LVNEGLQHLNSMYGKHGIMPDVKHYTCVVDM 177

Query: 275 YAKCGSVNYSDKVFNRIS-NPS 295
            ++ G ++ + ++   I  NPS
Sbjct: 178 LSRSGRLDEAYQLAKSIRVNPS 199



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 23  KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR 82
           +RS+    A  I        L+S    H  +++SG+  N    + L++ Y +      + 
Sbjct: 27  ERSNHFMLASVINACASLGKLVSGKVAHGAVIRSGYEVNDVVASALVDMYAKCGCFSYSD 86

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           ++F ++  P+++ YTS++AG    G  +++L LF+ M+   + PN+ TF  V+ ACS   
Sbjct: 87  KVFRQIPNPSIIPYTSMIAGAAKYGLGKVSLQLFEDMVRRRIKPNDVTFVGVLHACSHSG 146

Query: 143 DLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            +  G Q +++     G   ++   + +VDM  +   +D A
Sbjct: 147 LVNEGLQHLNSMYGKHGIMPDVKHYTCVVDMLSRSGRLDEA 187


>gi|357160774|ref|XP_003578871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Brachypodium distachyon]
          Length = 599

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 313/584 (53%), Positives = 396/584 (67%), Gaps = 11/584 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I+ L+    L S+A+ H+++LKSG  S   + NH+I  Y R   T  AR LFD M + +
Sbjct: 16  LIRLLRGASDLASVAATHAKLLKSGAASAVSSSNHIIAAYCRCGATACARDLFDGMPDRD 75

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           VVS+T+LM+GY   G+P+ AL L + M      V PN FTF+T + AC+ LAD   G+Q+
Sbjct: 76  VVSWTALMSGYSAAGRPRAALSLLRAMSRTRGGVPPNAFTFSTAVSACARLADAGLGRQV 135

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNA 208
           H   E  G+  +  V ++LVDMYGK    +GAR VFD M    RN VSW S++  +AQNA
Sbjct: 136 HARAEVEGYARDEFVATALVDMYGKAGCAEGARAVFDDMADPARNAVSWGSMLSVYAQNA 195

Query: 209 QGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            GHEA+++F EF  +S    PN  ML+SV+NACA +GRL  GK  HG V R G E N V+
Sbjct: 196 LGHEAVQLFAEFRTRSDGMSPNHFMLSSVVNACAGVGRLGVGKCVHGTVFRFGHECNGVI 255

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           A ALVDMY+KCG   YS KVF+RI  PSV+ YTS+IV AAKYGLGR +L LF+EMI RG+
Sbjct: 256 AVALVDMYSKCGFYEYSRKVFDRIEQPSVICYTSIIVAAAKYGLGRSALALFSEMIDRGV 315

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +PN VT +GV++ACSHSGLVD G+  L SM  KYGI P A HYTC VDMLGR GRLDEA+
Sbjct: 316 QPNSVTVLGVMNACSHSGLVDTGLHLLHSMQSKYGIGPCASHYTCAVDMLGRAGRLDEAF 375

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +LA   QV+     +LW +LLSA R+H R+D+A  A  ++ E NQ VA A V +SN Y  
Sbjct: 376 ELANEAQVEGRDALMLWSSLLSACRIHRRLDLATRAGQRVSEFNQDVAGALVVMSNAYTS 435

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFERGSEVLSLLRELE 505
           AG+ +N  ++ S M++ GI KEPGCSW+EI+D  Y FYAG  +    R  EV+ LL ELE
Sbjct: 436 AGQTDNAAAVWSNMRQRGIRKEPGCSWIEIKDIPYVFYAGLVSPAGARAGEVMMLLDELE 495

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREE----IVGLHSERLALAFGLISIPKGITIRIMKN 561
            KM+E+GY G        D  +E  EE    +VG+HSE LAL FGL+ IPKG+TIR+MKN
Sbjct: 496 AKMREKGYKGKLGSTRVFDAHEEDGEEGKGVMVGVHSEILALGFGLLVIPKGMTIRVMKN 555

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LRMC DCHD FKLIS IVE +FVVRD+NRFHHF+ GSCSC D+W
Sbjct: 556 LRMCCDCHDAFKLISGIVESEFVVRDLNRFHHFKMGSCSCNDYW 599


>gi|326490870|dbj|BAJ90102.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 595

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/582 (51%), Positives = 394/582 (67%), Gaps = 9/582 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I  L+      S+A+ H+++LK G  S   + NH+I  Y R   T  AR LFD M E +
Sbjct: 14  LIHLLRGATDHASVAATHAKLLKVGTASTVSSCNHIIAAYCRCGVTARARDLFDGMPERD 73

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V+S+T+LM+GY + G+P++A+ L + M  + V PN FTF+T + AC+ LAD   G+++H 
Sbjct: 74  VISWTALMSGYSSTGRPRLAVSLLRDMSHSGVPPNAFTFSTAVSACARLADSGLGREVHA 133

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQG 210
             E  G+  + VV ++L+DMYGK  DV+ AR VFD M    RN VSW S++  +AQNA G
Sbjct: 134 RAEVEGYASDAVVATALIDMYGKAGDVEAARAVFDGMAAPVRNAVSWGSMLSVYAQNALG 193

Query: 211 HEALEMFREFNYQSR-DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
            EA+++F +F  +S    PN  ML+SV+NACA +GRL  GK  HG  +R G   N V+  
Sbjct: 194 REAIQLFAQFRTKSNFMAPNHFMLSSVVNACAGVGRLGVGKSVHGTALRFGHGCNGVIVV 253

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDMY+KCG   YS KVF+RI  PSV+ YTS+IV AAKYGLGR +L  F+EMI + ++P
Sbjct: 254 ALVDMYSKCGFYEYSRKVFDRIERPSVICYTSIIVAAAKYGLGRCALTFFSEMIDQDVQP 313

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VT +GV+HACSHSGLVD G+  L SM  KYGI P A HYTC VDMLGR GRL+EA+++
Sbjct: 314 NSVTLLGVMHACSHSGLVDTGLHLLHSMQSKYGISPCASHYTCAVDMLGRAGRLEEAFEM 373

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           A   QV+     +LW +LLSA R H  +D+A  A++++ E NQ VA A V +SN Y  AG
Sbjct: 374 ADEAQVEGRDALMLWSSLLSACRTHRHLDLATRAAHRVSEFNQDVAGALVVMSNAYTSAG 433

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFERGSEVLSLLRELERK 507
           + +N  ++ S M++ GI K+PGCSW+EI+D  Y FYAG  +    R  EV+ LL ELE +
Sbjct: 434 QTDNAAAVWSNMRQRGIQKDPGCSWIEIKDIPYVFYAGLVSPAGARAGEVMMLLDELEGQ 493

Query: 508 MKERGYVGGKTGLVFVDVEDEARE----EIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           M+E+GY GG       D  +E  E    E+VG+HSE LAL FGL+ IPKG+TIR+MKNLR
Sbjct: 494 MREKGYKGGLGSTRVFDAHEEDGEDGKGEMVGVHSELLALGFGLLVIPKGMTIRVMKNLR 553

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           MC DCHD FKLIS I+ R+FVVRD+NRFHHF+ GSCSC D+W
Sbjct: 554 MCCDCHDAFKLISGIMVREFVVRDLNRFHHFKMGSCSCNDYW 595


>gi|125535880|gb|EAY82368.1| hypothetical protein OsI_37580 [Oryza sativa Indica Group]
          Length = 604

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/587 (52%), Positives = 402/587 (68%), Gaps = 14/587 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I  L+    L S+++ H+++LK G  S+  + NHL+  Y R   T +AR LFD M + N
Sbjct: 18  LIHLLRGASDLASVSATHAKLLKLGAASSVASSNHLLAAYGRCGCTALARHLFDGMRDRN 77

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VVS+T+LM+GY + G+P+ A+ L + M  + V PN FTF+T   +C+ LAD   G+Q+H 
Sbjct: 78  VVSWTALMSGYASAGRPRAAVALLRAMARSGVPPNAFTFSTAASSCARLADAGLGRQVHA 137

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNAQG 210
             E  G+  + VV ++LVDMYGK   V  AR VFD M    RN VSW S++  +AQNA G
Sbjct: 138 RAEVAGYACDSVVSTALVDMYGKAGRVGDARAVFDAMPVTARNAVSWASMLSVYAQNALG 197

Query: 211 HEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           H+A+++F E      D  PN  ML+SV+NACA +GRL  GK  HG+V+  G E NDVVA 
Sbjct: 198 HDAIQLFAELRTNGEDMAPNHFMLSSVVNACAGVGRLGIGKCIHGMVLHHGHEDNDVVAV 257

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDMY+KCG   YS KVF+RI+ PSV+ YTS+IV  AKYGLGR +L LF++M+ RG++P
Sbjct: 258 ALVDMYSKCGIYEYSKKVFDRINQPSVIPYTSIIVATAKYGLGRCALALFSDMVGRGVQP 317

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VT +GVLHACSHSGLVD G+Q L SM  +YGI P A HYTC VDMLGR G+L+EA++L
Sbjct: 318 NSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYGIDPCASHYTCAVDMLGRAGQLEEAFEL 377

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           A   QV+ +   +LW +LLSA R H R+D+A  A  ++ E  Q VA A V +SN YA AG
Sbjct: 378 ADEAQVNGNDALMLWSSLLSACRNHKRLDLATMAGQKVSEFTQDVAGALVVMSNAYASAG 437

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFERGSEVLSLLRELERK 507
           + ++  ++ S M+R GI K+PGCSW+EI+D +Y FYAG  +    R  EV+ LL ELE K
Sbjct: 438 QADDAAAVWSNMRRRGIRKDPGCSWIEIKDISYMFYAGVVSPAGSRAGEVMLLLDELEGK 497

Query: 508 MKERGYVG--GKTGLVFVDVED-------EAREEIVGLHSERLALAFGLISIPKGITIRI 558
           M+E+GY G  G   ++  D E+       E R  +VG+HSE LAL  GL+ IPKG+ IR+
Sbjct: 498 MREKGYKGRIGSARVLDADEEEDGNHHHQEGRGVMVGVHSELLALGLGLLVIPKGMAIRV 557

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           MKNLRMCRDCH+ FK+IS IVER+FVVRD+NRFHHFR GSCSC D+W
Sbjct: 558 MKNLRMCRDCHEAFKVISAIVEREFVVRDLNRFHHFRMGSCSCNDYW 604


>gi|115487490|ref|NP_001066232.1| Os12g0163600 [Oryza sativa Japonica Group]
 gi|77553071|gb|ABA95867.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648739|dbj|BAF29251.1| Os12g0163600 [Oryza sativa Japonica Group]
 gi|125578601|gb|EAZ19747.1| hypothetical protein OsJ_35325 [Oryza sativa Japonica Group]
 gi|215695280|dbj|BAG90471.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 604

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 305/587 (51%), Positives = 401/587 (68%), Gaps = 14/587 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I  L+    L S+++ H+++LK G  S+  + NHL+  Y R   T +AR LFD M + N
Sbjct: 18  LIHLLRGASDLASVSATHAKLLKLGAASSVASSNHLLAAYGRCGCTALARHLFDGMRDRN 77

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VVS+T+LM+GY + G+P+ A+ L + M  + V PN FTF+T   +C+ LAD   G+Q+H 
Sbjct: 78  VVSWTALMSGYASAGRPRAAVALLRAMARSGVPPNAFTFSTAASSCARLADAGLGRQVHA 137

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNAQG 210
             E  G+  + VV ++LVDMYGK   V  AR VFD M    RN VSW S++  +AQNA G
Sbjct: 138 RAEVAGYACDSVVSTALVDMYGKAGRVGDARAVFDAMPVTARNAVSWASMLSVYAQNALG 197

Query: 211 HEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           H+A+++F E      D  PN  ML+SV+NACA +GRL  GK  HG+V+  G E NDVVA 
Sbjct: 198 HDAIQLFAELRTNGEDMAPNHFMLSSVVNACAGVGRLGIGKCIHGMVLHHGHEDNDVVAV 257

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDMY+KCG   YS KVF+RI+ PSV+ YTS+IV  AKYGLGR +L LF++M+ RG++P
Sbjct: 258 ALVDMYSKCGIYEYSKKVFDRINQPSVIPYTSIIVATAKYGLGRCALALFSDMVGRGVQP 317

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VT +GVLHACSHSGLVD G+Q L SM  +YGI P A HYTC VDMLGR G+L+ A++L
Sbjct: 318 NSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYGIDPCASHYTCAVDMLGRAGQLEAAFEL 377

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           A   QV+ +   +LW +LLSA R H R+D+A  A  ++ E  Q VA A V +SN YA AG
Sbjct: 378 ADEAQVNGNDALMLWSSLLSACRNHKRLDLATMAGQKVSEFTQDVAGALVVMSNAYASAG 437

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFERGSEVLSLLRELERK 507
           + ++  ++ S M+R GI K+PGCSW+EI+D +Y FYAG  +    R  EV+ LL ELE K
Sbjct: 438 QADDAAAVWSNMRRRGIRKDPGCSWIEIKDISYVFYAGMVSPAGSRAGEVMLLLDELEGK 497

Query: 508 MKERGYVG--GKTGLVFVDVED-------EAREEIVGLHSERLALAFGLISIPKGITIRI 558
           M+E+GY G  G   ++  D E+       E R  +VG+HSE LAL  GL+ IPKG+ IR+
Sbjct: 498 MREKGYKGRIGSARVLDADEEEDGNHHHQEGRGVMVGVHSELLALGLGLLVIPKGMAIRV 557

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           MKNLRMCRDCH+ FK+IS IVER+FVVRD+NRFHHFR GSCSC D+W
Sbjct: 558 MKNLRMCRDCHEAFKVISAIVEREFVVRDLNRFHHFRMGSCSCNDYW 604


>gi|413916233|gb|AFW56165.1| hypothetical protein ZEAMMB73_705806 [Zea mays]
          Length = 597

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/586 (49%), Positives = 386/586 (65%), Gaps = 10/586 (1%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           K   I  L+    L S+A+ H++++K+G  +   + NHL+  Y R      AR LFD M 
Sbjct: 12  KPVLIHLLRGGSDLASVAATHAKLVKAGIATPLSSSNHLLAAYCRCGAIGRARDLFDGMR 71

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + +VVS+T+LM+GY    +P+ A+ L + M  + V PN  TF+T    C+ LAD   G+Q
Sbjct: 72  DRDVVSWTTLMSGYAAAARPRDAVSLLRAMGCSGVRPNAVTFSTAACTCARLADAELGRQ 131

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQN 207
           +H   E  G   + VV ++LVDMYGK   V+ AR VFD M    RN VSW +++  + QN
Sbjct: 132 VHAQAEIAGCARDTVVATALVDMYGKSGSVEDARAVFDAMAAPARNAVSWGAMLAVYVQN 191

Query: 208 AQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           A G+EA+E+F E         PN  MLASV++ACA + RL  G+  HG V+R G   NDV
Sbjct: 192 ALGNEAVELFAELRTCGGGMAPNHFMLASVVSACAGMARLGIGRCVHGAVLRLGYGNNDV 251

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           ++ ALVDMY+KCG   YS KVF+RI  PSVVTYTS+IV AAKYG    +L LFNEM+ +G
Sbjct: 252 ISVALVDMYSKCGRYEYSRKVFDRIEQPSVVTYTSIIVAAAKYGRWTCALTLFNEMVDQG 311

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++PNDVT +GV+HACSHSGLVD G+Q L SM  +YG+ P   HYT  VDMLGR GRL+EA
Sbjct: 312 VQPNDVTLLGVMHACSHSGLVDTGLQLLRSMQSRYGVAPCPSHYTSAVDMLGRAGRLEEA 371

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ--VANAYVTLSNT 444
           ++LAK  Q++ +   LLW +LLSA R H R+D+A  A  ++ E N Q  VA   V +SN 
Sbjct: 372 FELAKEAQLEGNDALLLWNSLLSACRTHKRLDLATMAGQRVYEFNNQQDVAAGLVVMSNA 431

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFERGSEVLSLLR 502
           Y  AG+ +N  ++RS M+  GI K+PGCSW+E++D  + FYAG  +       +VL LL 
Sbjct: 432 YISAGQIDNAAAVRSSMRLRGIRKDPGCSWIEVKDTPHVFYAGAVSCAGAWADKVLMLLD 491

Query: 503 ELERKMKERGYVGGKTGLVFVDV---EDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
           ELE KM+ERGY G        D    E+E +  +VG+HSE LALAFGL+ +P G+TIR+M
Sbjct: 492 ELESKMRERGYRGRLGSARVSDAHEDEEEGKGVMVGVHSEILALAFGLLVVPNGMTIRVM 551

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLRMC DCH+VFKLIS IVE +FVVRD+NRFHHF+ GSCSC D+W
Sbjct: 552 KNLRMCSDCHEVFKLISAIVESEFVVRDLNRFHHFKLGSCSCNDYW 597


>gi|242082896|ref|XP_002441873.1| hypothetical protein SORBIDRAFT_08g003980 [Sorghum bicolor]
 gi|241942566|gb|EES15711.1| hypothetical protein SORBIDRAFT_08g003980 [Sorghum bicolor]
          Length = 599

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 295/588 (50%), Positives = 393/588 (66%), Gaps = 12/588 (2%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           K   I  L+    L S+A+ H++++K+G  S   + NHL+  Y R      AR LFD M 
Sbjct: 12  KPVLIHLLRGASDLASVAATHAKVVKAGVASPLSSCNHLLAAYCRCGAMGYARDLFDGMP 71

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + +VVS+T+LM+GY    +P+ A+ L + M  + V PN  TF+T   AC+ LAD   G+Q
Sbjct: 72  DRDVVSWTTLMSGYAAAARPRDAMSLLRAMGSSGVRPNAVTFSTAACACARLADAGLGRQ 131

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQN 207
           +H   E  G   + VV ++L+DMYGK   V+ AR VFD MG   RN VSW +++  +AQN
Sbjct: 132 VHAQAEVAGCARDAVVATALLDMYGKAGGVEDARAVFDAMGAPSRNAVSWGAMLAVYAQN 191

Query: 208 AQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           A G EA+ +F E   +      PN  +LA+V++ACA + RL  G+  HG V+R G   ND
Sbjct: 192 ALGDEAIRLFAELRTRGCGGVAPNHFILATVVSACAGMARLGIGRCVHGSVLRLGYGNND 251

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
           V++ ALVDMY+KCG   YS KVF+RI  PSVV YTS+IV AAKYG  R +L LF+EM+ +
Sbjct: 252 VISVALVDMYSKCGCYEYSRKVFDRIEQPSVVAYTSIIVAAAKYGRWRCALALFDEMVDQ 311

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           G++PNDVT +GV+HACSHSGLVD G+Q L SM  KYG+ P   HYT  VDMLGR G+L+E
Sbjct: 312 GVQPNDVTLLGVMHACSHSGLVDTGLQLLRSMQSKYGVAPCPSHYTSAVDMLGRAGQLEE 371

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE-SNQQ-VANAYVTLSN 443
           A++LA+  Q++ +   LLW +LLSA R H R+D+A  A  ++ E SNQQ VA   V +SN
Sbjct: 372 AFELAEEAQLEGNDALLLWNSLLSACRTHKRLDLATMAGQRVSEFSNQQDVAAGLVVMSN 431

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFERGSEVLSLL 501
            Y  AG+ +N  ++RS M+  GI K+PGCSW+E++D  Y FYAG  +       EV+ LL
Sbjct: 432 AYVSAGQIDNAAAVRSSMRLRGIRKDPGCSWIEVKDTPYVFYAGAISCAGAWAGEVVMLL 491

Query: 502 RELERKMKERGYVG----GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            ELE KM+ERGY G     +      D E+E +  +VG+HSE LALAFGL+ +PKG+TIR
Sbjct: 492 DELESKMRERGYRGRLGSARVSDAHEDDEEEGKGVMVGVHSEILALAFGLLVVPKGMTIR 551

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +MKNLRMC DCH+VFKLIS IVER+FVVRD+NRFHHF+ GSCSC D+W
Sbjct: 552 VMKNLRMCSDCHEVFKLISGIVEREFVVRDLNRFHHFKMGSCSCNDYW 599



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           SR  P   +   +I+       L S    H  VV++G        + L+  Y +CG++ Y
Sbjct: 3   SRSSPAAALKPVLIHLLRGASDLASVAATHAKVVKAGVASPLSSCNHLLAAYCRCGAMGY 62

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  +F+ + +  VV++T+++ G A     R ++ L   M S G++PN VTF     AC+ 
Sbjct: 63  ARDLFDGMPDRDVVSWTTLMSGYAAAARPRDAMSLLRAMGSSGVRPNAVTFSTAACACAR 122

Query: 344 SGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             L D G+ + + +     G   DA   T ++DM G+ G +++A  +  ++   P    +
Sbjct: 123 --LADAGLGRQVHAQAEVAGCARDAVVATALLDMYGKAGGVEDARAVFDAMGA-PSRNAV 179

Query: 403 LWGTLLS 409
            WG +L+
Sbjct: 180 SWGAMLA 186


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/569 (41%), Positives = 345/569 (60%), Gaps = 7/569 (1%)

Query: 40  CKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C HL++L     +H   ++SG  S+   +N L+N Y +      A +LF+ M   +V S+
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY    Q   AL  F +M    + PN  T  +V+ AC+ L  L  G+QIH +   
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR 350

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF+ N VV ++LV+MY KC +V+ A ++F+ M  +NVV+W +II  ++Q+   HEAL +
Sbjct: 351 SGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALAL 410

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F E   Q   +P+   + SV+ ACA    L  GK  HG  +RSG E N VV + LVD+YA
Sbjct: 411 FIEMQAQGI-KPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYA 469

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG+VN + K+F R+    VV++T+MI+    +G G  +L LF++M   G K + + F  
Sbjct: 470 KCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTA 529

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L ACSH+GLVD+G+Q+   M   YG+ P  +HY C+VD+LGR G LDEA  + K++ ++
Sbjct: 530 ILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLE 589

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           PD    +WG LL A R+H  +++  +A+  L E +   A  YV LSN YA A  WE+V  
Sbjct: 590 PDAN--VWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAK 647

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG 516
           LR  MK  G+ K+PGCS V +      F  G+    +  ++ ++L  L  +M++ GYV  
Sbjct: 648 LRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYV-P 706

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
            T L   DVE+EA+E I+  HSE+LA++FG+I+   GI IRIMKNLR+C DCH+  K IS
Sbjct: 707 NTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFIS 766

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IV R+ +VRD NRFHH +NG CSCGD+W
Sbjct: 767 KIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 223/386 (57%), Gaps = 5/386 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH +I+  GF S+      L + Y +    + ARQ+FD M + +VVS+ +++AGY   GQ
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL LF +M  N + PN  T  +V+  C+ L  L  GKQIH +    G + +++V + 
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNG 261

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV+MY KC +V+ A ++F+ M  R+V SW +II  ++ N+Q HEAL  F     +   +P
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGI-KP 320

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   + SV+ ACA L  L  G+  HG  +RSG E NDVV +ALV+MYAKCG+VN + K+F
Sbjct: 321 NSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLF 380

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+   +VV + ++I G +++G    +L LF EM ++GIKP+    V VL AC+H   ++
Sbjct: 381 ERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALE 440

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q +     + G   +    T +VD+  + G ++ A KL + +   P+   + W T++
Sbjct: 441 QGKQ-IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERM---PEQDVVSWTTMI 496

Query: 409 SASRLHGRVDIAVEASNQLIESNQQV 434
            A  +HG  + A+   +++ E+  ++
Sbjct: 497 LAYGIHGHGEDALALFSKMQETGTKL 522



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/324 (35%), Positives = 178/324 (54%), Gaps = 5/324 (1%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N V +   + GY+  G    AL L+ +M    + P++  F +VIKAC   +DL  G+++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             I   GF+ +++V ++L  MY KC  ++ AR+VFD M  R+VVSW +II  ++QN Q +
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL +F E       +PN   L SV+  CA L  L  GK  H   +RSG E + +V + L
Sbjct: 204 EALALFSEMQVNGI-KPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           V+MYAKCG+VN + K+F R+    V ++ ++I G +       +L  FN M  RGIKPN 
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T V VL AC+H   +++G Q +     + G   +      +V+M  + G ++ AYKL +
Sbjct: 323 ITMVSVLPACAHLFALEQG-QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFE 381

Query: 392 SIQVDPDGGPLLWGTLLSASRLHG 415
            +   P    + W  ++S    HG
Sbjct: 382 RM---PKKNVVAWNAIISGYSQHG 402


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/572 (41%), Positives = 360/572 (62%), Gaps = 7/572 (1%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L +L+    +H+ I+K GF S+ F  N LI+ Y    + +VAR++FDEM E NV
Sbjct: 131 LKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNV 190

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            ++ S+ AGY   G  +  + LF +ML   +  +E T  +V+ AC  LADL  G+ I+ +
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRY 250

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +E  G + N  + +SLVDMY KC  VD ARR+FD M  R+VV+W+++I  ++Q ++  EA
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREA 310

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++F E    + D PN+  + S++++CA LG L +GK  H  + +   +    + +AL+D
Sbjct: 311 LDLFHEMQKANID-PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMD 369

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
            YAKCGSV  S +VF ++   +V+++T +I G A  G G+ +L+ F  M+ + ++PNDVT
Sbjct: 370 FYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVT 429

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+GVL ACSH+GLVDEG     SM R +GI P  +HY C+VD+LGR G ++EA++  K++
Sbjct: 430 FIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNM 489

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            + P+   ++W TLL++ ++H  V+I  E+  QLI      +  Y+ LSN YA  G WE+
Sbjct: 490 PIQPNA--VIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWED 547

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R EMK  GI K PGCS +E+    + F+A + +  +  E+ + + ++ +++K  GY
Sbjct: 548 ALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGY 607

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T    +D E++ +E  V  HSE+LA+AFGLI  P G TIRI KNLR+C DCH+  K
Sbjct: 608 VPN-TAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATK 666

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L+S +  R+ VVRD  RFHHF+ GSCSC D+W
Sbjct: 667 LVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 209/397 (52%), Gaps = 7/397 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVV 94
           L++CK +  L  +H+ ++K+  L       +L+     L  T +  A  +F ++ EP+  
Sbjct: 31  LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSP 90

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           +Y  ++ G+     P  A+LLF++M  N V P+EFTF  ++K CS L  L  G+QIH  I
Sbjct: 91  AYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALI 150

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              GF  +  V ++L+ MY  C +V+ ARRVFD M  RNV +W S+   + ++    E +
Sbjct: 151 MKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVV 210

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           ++F E   +   R ++  L SV+ AC  L  L  G+  +  V   G + N  + ++LVDM
Sbjct: 211 KLFHEM-LELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDM 269

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAKCG V+ + ++F+++    VV +++MI G ++    R +LDLF+EM    I PN++T 
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           V +L +C+  G ++ G + +    +K  +       T ++D   + G ++ + ++   + 
Sbjct: 330 VSILSSCAVLGALETG-KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKM- 387

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
             P    L W  L+     +G+   A+E    ++E N
Sbjct: 388 --PVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKN 422


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/597 (40%), Positives = 348/597 (58%), Gaps = 10/597 (1%)

Query: 14  AASSLTRQNKRSSCHTKAH--FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHL 68
           A  S +  +  S+C T  +  +   LQ C   K +     +H+++  +GF  +T     L
Sbjct: 57  AIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKL 116

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
           +N Y        AR LFD + + N+  +  L+ GY   G  + A+ L+ +M    + P+ 
Sbjct: 117 VNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDN 176

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           FTF  V+KAC+ L+ +  G++IH H+   G++ ++ V ++L+DMY KC  V  AR VFD 
Sbjct: 177 FTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDK 236

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           +  R+ V W S++ A++QN      L +  E       RP +  L + I+A A    L  
Sbjct: 237 ILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGL-RPTEATLVTAISASADNAALPQ 295

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G+  HG+  R   E +D V +ALVDMYAKCGSV  +  +F R+    VV++ +MI G A 
Sbjct: 296 GRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAM 355

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +G    +LDLF EM +R  KP+ +TFVGVL ACSH GL++EG    ++M R Y I P  +
Sbjct: 356 HGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQ 414

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           HYTC+VD+LG +GRLDEAY L   ++V PD G  +WG LL++ ++H  V++   A  +LI
Sbjct: 415 HYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSG--VWGALLNSCKIHANVELGEIALERLI 472

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
           E     A  YV LSN YA AG+WE V  LR  M    + K   CSW+E++++ +AF +G+
Sbjct: 473 ELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGD 532

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
                  E+ S L  +   MKE GY    TG VF DVED+ +  +V  HSERLA+AFGLI
Sbjct: 533 TSHPLSDEIYSELERVGGLMKEAGY-SPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLI 591

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S P G  + I KNLR+C DCH   K IS I ER+  VRDVNR+HHF++G CSCGD+W
Sbjct: 592 STPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 358/572 (62%), Gaps = 5/572 (0%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           I  L  C+++  +  VH+ ++ +G L +    N L+  Y + K    A  LFD +   + 
Sbjct: 7   IDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDS 66

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            +++ ++ G+   G        F+++L   V P+ +T   VI+ C    DL  G+ IH  
Sbjct: 67  KTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDV 126

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +   G   +  VC+SLVDMY KC  V+ A+R+F+ M  +++V+WT +I A+A +   +E+
Sbjct: 127 VLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYES 185

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L +F     +    P++  + +V+NACA LG +   + A+  +VR+G   + ++ +A++D
Sbjct: 186 LVLFDRMREEGV-VPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMID 244

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCGSV  + +VF+R+   +V+++++MI     +G G+ ++DLF+ M+S  I PN VT
Sbjct: 245 MYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVT 304

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FV +L+ACSH+GL++EG++  +SM+ ++ + PD KHYTC+VD+LGR GRLDEA +L +++
Sbjct: 305 FVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAM 364

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            V+ D    LW  LL A R+H ++++A +A+N L+E   Q    YV LSN YA AG+WE 
Sbjct: 365 TVEKD--ERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEK 422

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V   R  M +  + K PG +W+E+ ++TY F  G+    +  E+  +L  L +K++  GY
Sbjct: 423 VAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGY 482

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V  DVE+E ++E++  HSE+LA+AFGLI+IP+G  IRI KNLR+C DCH   K
Sbjct: 483 V-PDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSK 541

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++S I+ R  +VRD NRFHHF +G+CSCGD+W
Sbjct: 542 MVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 354/587 (60%), Gaps = 16/587 (2%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           R  CHT       L+ C HL  L     +H+ +L S F  +    N L+N Y +      
Sbjct: 15  REICHT------LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVY 68

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR+LFDEM   +VV++T+L+ GY    +PQ ALLL  +ML   + PN+FT A+++KA S 
Sbjct: 69  ARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASG 128

Query: 141 LA--DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           +   D++ G+Q+H     +G+  N+ V  +++DMY +C+ ++ A+ +FD+M  +N VSW 
Sbjct: 129 VGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWN 188

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +A+  QG +A  +F     +   +P     +SV+ ACAS+G L  GK  H ++++
Sbjct: 189 ALIAGYARKGQGDKAFCLFSNM-LRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK 247

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G +    V + L+DMYAK GS+  + KVF+R++   VV++ SM+ G +++GLG+ +L  
Sbjct: 248 WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQR 307

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F EM+   I PND+TF+ VL ACSH+GL+DEG  + D M +KY + P   HY  +VD+LG
Sbjct: 308 FEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFD-MMKKYNVEPQISHYVTMVDLLG 366

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R G LD A +    + + P     +WG LL A R+H  +++   A+  + E +      +
Sbjct: 367 RAGHLDRAIQFISEMPIKPTAA--VWGALLGACRMHKNMELGGYAAECIFELDSHYPGTH 424

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V L N YALAG W +   +R  MK +G+ KEP CSWVE+ ++ + F A +    +  E+ 
Sbjct: 425 VLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIH 484

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           ++  ++  K+KE GYV   +  V + ++ + RE  +  HSE+LALAF L++ P G TIRI
Sbjct: 485 NMWEQISDKIKEIGYVPDSSH-VLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRI 543

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KN+R+C DCH  FK +S +VER+ +VRD NRFHHF +G+CSC D+W
Sbjct: 544 KKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 355/573 (61%), Gaps = 8/573 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEPNV 93
           L +C  L  L  + +  +K+   ++   L  LIN   +   T     A QLF+ + +P++
Sbjct: 33  LPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDI 92

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V + S+  GY     P  A+ LF K L   + P+++TF +++KAC +      GKQ+H  
Sbjct: 93  VLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCL 152

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G   N  VC +L++MY  CNDVDGA+RVFD +    VVS+ +II  +A++++ +EA
Sbjct: 153 AIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEA 212

Query: 214 LEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           L +FR+   Q+R  +PN   + SV+++CA LG L  GK  H  V ++G +    V +AL+
Sbjct: 213 LSLFRQL--QARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALI 270

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAKCGS++ +  VF  +S      +++MIV  A +G G+  + +F EM    ++P+++
Sbjct: 271 DMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEI 330

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+G+L+ACSH+GLVDEG ++  SM   YGIIP  KHY C+VD+LGR G L EAYK    
Sbjct: 331 TFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDE 390

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + P   P+LW TLLS+   HG +++A +  NQ++E +      YV LSN  A AG+WE
Sbjct: 391 LPIKPT--PILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWE 448

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
           +V +LR  M   G  K PGCS +E+ +  + F++G+ +    + +   L EL +++K  G
Sbjct: 449 DVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVG 508

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   + +V  D+EDE +E  +  HSE+LA++FGL++ P G TIR++KNLR+C DCH   
Sbjct: 509 YVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAA 568

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KLIS +++R+ ++RDV RFHHF++G CSCGD+W
Sbjct: 569 KLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/572 (39%), Positives = 347/572 (60%), Gaps = 8/572 (1%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L  L     VH  +L S F  +    N L+  Y R    + AR+LFDEM   ++
Sbjct: 81  LKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDM 140

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+TS++ GY    +   ALLLF +ML +   PNEFT ++++K C  +A    G+QIH  
Sbjct: 141 VSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHAC 200

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
              +G   N+ V SSLVDMY +C  +  A  VFD +GC+N VSW ++I  +A+  +G EA
Sbjct: 201 CWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEA 260

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L +F     +   RP +   ++++++C+S+G L  GK  H  +++S  +    V + L+ 
Sbjct: 261 LALFVRMQREGY-RPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLH 319

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAK GS+  ++KVF+++    VV+  SM++G A++GLG+ +   F+EMI  GI+PND+T
Sbjct: 320 MYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDIT 379

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ VL ACSH+ L+DEG +H   + RKY I P   HY  +VD+LGR G LD+A    + +
Sbjct: 380 FLSVLTACSHARLLDEG-KHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEM 438

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P     +WG LL AS++H   ++   A+ ++ E +      +  L+N YA AG WE+
Sbjct: 439 PIEPTVA--IWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWED 496

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V  +R  MK +G+ KEP CSWVE+ +  + F A +    +  ++  +  +L +K+KE GY
Sbjct: 497 VAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGY 556

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V + V+ + +E  +  HSE+LAL+F L++ P G TIRIMKN+R+C DCH   K
Sbjct: 557 V-PDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIK 615

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S +V+R+ +VRD NRFHHF +G CSCGD+W
Sbjct: 616 YVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+   + T++K C+ L  L  GK +H H+    F+++LV+ +SL+ MY +C  ++GARR+
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRL 131

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R++VSWTS+I  +AQN +  +AL +F        + PN+  L+S++  C  +  
Sbjct: 132 FDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAE-PNEFTLSSLVKCCGYMAS 190

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  H    + GC  N  V S+LVDMYA+CG +  +  VF+++   + V++ ++I G
Sbjct: 191 YNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAG 250

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
            A+ G G  +L LF  M   G +P + T+  +L +CS  G +++G
Sbjct: 251 YARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P++ +  +++  C  LG+L  GK+ H  V+ S  + + V+ ++L+ MYA+CGS+  + ++
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRL 131

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ + +  +V++TSMI G A+      +L LF  M+S G +PN+ T   ++  C +    
Sbjct: 132 FDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASY 191

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + G Q + +   KYG   +    + +VDM  R G L EA
Sbjct: 192 NCGRQ-IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEA 229


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/609 (40%), Positives = 354/609 (58%), Gaps = 44/609 (7%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L SL     VHS I+K GF S+ F  N LI+ Y       +AR LFDE L  ++
Sbjct: 118 LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDL 177

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VSY +++ GY  + QP+ AL LF +M  + + P+EFTF  +   CS+L +   GKQIH  
Sbjct: 178 VSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQ 237

Query: 154 I--ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-------------------- 191
           +         N+++ S++VDMY KC  ++ A RVF  MG                     
Sbjct: 238 VYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEI 297

Query: 192 ------------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
                       R+V+SWT++I  ++Q  Q  EALE+F+E       +P++  L +V++A
Sbjct: 298 NVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGI-KPDEVTLVAVLSA 356

Query: 240 CASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSV 296
           CA LG    GK  +   + +G    N ++ +A++DMYAKCGS++ + ++F R+     + 
Sbjct: 357 CARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTG 416

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
             + SMI G A++GLG  ++ +F E+IS G+KP++VTFVGVL AC HSGL++EG +  +S
Sbjct: 417 FVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFES 476

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M+  YGI P  +HY C+VD+LGR G L+EAY L + +  + +   ++W  LLSA R HG 
Sbjct: 477 MFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS--VIWRALLSACRTHGN 534

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           V I   A  +L+E   Q    YV LSN  A A +WE    +R  M+  GI K PG S++E
Sbjct: 535 VKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIE 594

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           +    + F A +    +G E+  +L+++  ++K  GYV   T  V  D+++E +E +V  
Sbjct: 595 LGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVP-NTAQVMFDIDEEEKESVVSY 653

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LALAFGL+      TIRI+KNLR+C DCH  FKL+S+I  R+  VRD  RFHHFRN
Sbjct: 654 HSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRN 713

Query: 597 GSCSCGDFW 605
           GSCSC DFW
Sbjct: 714 GSCSCMDFW 722



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 217/433 (50%), Gaps = 42/433 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPNV 93
           L+ CK       +H++ + +G     F+++ LI+ +  L        +R LF ++  PN+
Sbjct: 16  LESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNL 75

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHT 152
             + +++ GY     P+ A++L+  M+   +  PN FTF  ++ +C+ L+ L  G ++H+
Sbjct: 76  FMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHS 135

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           HI   GF+ +L V ++L+ +Y    +++ AR +FD    R++VS+ ++I  +A+  Q   
Sbjct: 136 HIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPES 195

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS--GCEFNDVVASA 270
           AL +F E    S   P++    ++ + C+ L     GK  H  V ++    + N ++ SA
Sbjct: 196 ALCLFGEMQ-NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSA 254

Query: 271 LVDMYAKCGSVNYSDKV--------------------------------FNRISNPSVVT 298
           +VDMYAKCG +N +++V                                FN +    V++
Sbjct: 255 IVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVIS 314

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +T+MI G ++ G    +L+LF EM + GIKP++VT V VL AC+  G  D G + L   Y
Sbjct: 315 WTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLG-KRLYHQY 373

Query: 359 RKYGIIPDAKHYT-CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            + G+       T  V+DM  + G +D A ++ + +  +   G  ++ ++++    HG  
Sbjct: 374 IENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTG-FVFNSMIAGLAQHGLG 432

Query: 418 DIAVEASNQLIES 430
           + A+    +LI +
Sbjct: 433 ETAITVFRELIST 445



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 151/327 (46%), Gaps = 9/327 (2%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMY---GKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           G QIH      G  + +   S L+  +   G  + +D +R +F  + C N+  W ++I  
Sbjct: 25  GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           ++++    EA+ ++     +    PN      ++N+CA L  L  G   H  +++ G E 
Sbjct: 85  YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V +AL+ +Y+  G++N +  +F+      +V+Y +MI G A+      +L LF EM 
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY-GIIPDAKHYTCVVDMLGRTGR 382
           + GI P++ TFV +   CS     + G Q    +Y+    I  +    + +VDM  + G 
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           ++ A ++  ++          W +++      G +++A +  N + E +     ++  + 
Sbjct: 265 INIAERVFSTMGTSKSAAA--WSSMVCGYARCGEINVARKLFNHMHERD---VISWTAMI 319

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKE 469
           + Y+ AG+      L  EM+  GI  +
Sbjct: 320 SGYSQAGQCSEALELFKEMEALGIKPD 346


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 364/606 (60%), Gaps = 7/606 (1%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFL 59
           +  T   +F+ A +S         C     F   L+ C  ++ L    SVH  I++ G  
Sbjct: 78  RCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMD 137

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            + +T N L+N Y +L      R++F+ M   +VVSY +++AGY   G  + AL + ++M
Sbjct: 138 CDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREM 197

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             + + P+ FT ++V+   S   D++ GK+IH ++   G   ++ + SSLVDMY K   +
Sbjct: 198 GTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI 257

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           + + RVF  +  R+ +SW S++  + QN + +EAL +FR+    ++ RP     +SVI A
Sbjct: 258 EDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQM-VSAKVRPGAVAFSSVIPA 316

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           CA L  L  GK  HG V+R G   N  +ASALVDMY+KCG++  + K+F+R++    V++
Sbjct: 317 CAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSW 376

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           T++I+G A +G G  ++ LF EM  +G+KPN V FV VL ACSH GLVDE   + +SM +
Sbjct: 377 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 436

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            YG+  + +HY  V D+LGR G+L+EAY     ++V+P G   +W TLLS+  +H  +++
Sbjct: 437 VYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGS--VWSTLLSSCSVHKNLEL 494

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           A + + ++   + +   AYV + N YA  G W+ +  LR  +++ G+ K+P CSW+E+++
Sbjct: 495 AEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKN 554

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           +T+ F +G+        +   L+ +  +M++ GYV   +G V  DV++E + E++  HSE
Sbjct: 555 KTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSG-VLHDVDEEHKRELLFGHSE 613

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLA+AFG+I+   G TIR+ KN+R+C DCH   K IS I ER+ +VRD +RFHHF  GSC
Sbjct: 614 RLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSC 673

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 674 SCGDYW 679



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 211/414 (50%), Gaps = 11/414 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++ +++  LS+T + + +I+ Y  LK    A  +F  +  P V+++ S++  + +   
Sbjct: 27  LHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSL 85

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  F +M  +   P+   F +V+K+C+M+ DL  G+ +H  I   G   +L   ++
Sbjct: 86  FSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNA 145

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY K   +D  R+VF+LM  ++VVS+ ++I  +AQ+    +AL M RE    S  +P
Sbjct: 146 LMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG-TSDLKP 204

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   L+SV+   +    ++ GK  HG V+R G + +  + S+LVDMYAK   +  S++VF
Sbjct: 205 DAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 264

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +     +++ S++ G  + G    +L LF +M+S  ++P  V F  V+ AC+H   + 
Sbjct: 265 SHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLH 324

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q L     + G   +    + +VDM  + G +  A K+   + +  +   + W  ++
Sbjct: 325 LGKQ-LHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDE---VSWTAII 380

Query: 409 SASRLHGR----VDIAVEASNQLIESNQQVANAYVTLSNTYALAGE-WENVHSL 457
               LHG     V +  E   Q ++ NQ    A +T  +   L  E W   +S+
Sbjct: 381 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 434


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 344/558 (61%), Gaps = 5/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H   +++GF         L + Y +    + AR +FD M +  VVS+ S+M GY+  G
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P+ A+ +F+KML   + P   T    + AC+ L DL  GK +H  ++      ++ V +
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MY KC  VD A  +F+ +  R  VSW ++I+ +AQN +  EAL  F E       +
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM-K 447

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   + SVI A A L      K  HG+++RS  + N  V +ALVDMY+KCG+++ + K+
Sbjct: 448 PDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKL 507

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ IS+  V+T+ +MI G   +GLGR +LDLF++M    ++PND+T++ V+ ACSHSGLV
Sbjct: 508 FDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLV 567

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           DEG++H  SM + YG+ P   HY  +VD+LGR GR+ EA+   +++ + P  G  ++G +
Sbjct: 568 DEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISP--GITVYGAM 625

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A ++H  +++  +A+ +L E N      +V L+N YA   +W  V  +R  M++ G+ 
Sbjct: 626 LGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K PGCS VE+R++ ++FY+G+    +   + + L EL  ++K  GYV   T L+ +DVED
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV-PDTNLI-LDVED 743

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +E+++  HSE+LA+AFGL++   G TI + KNLR+C DCH+  K IS +  R+ +VRD
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRD 803

Query: 588 VNRFHHFRNGSCSCGDFW 605
           + RFHHF+NG CSCGD+W
Sbjct: 804 MQRFHHFKNGICSCGDYW 821



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 190/367 (51%), Gaps = 5/367 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++ + F +N F +  ++N Y + ++   A ++FD M E ++VS+ +++AG+   G 
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL L  +M      P+  T  TV+ A + +  L+ GK IH +    GF   + + ++
Sbjct: 229 AKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTA 288

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L DMY KC  V+ AR +FD M  + VVSW S++  + QN +  +A+ +F +   +  D P
Sbjct: 289 LADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID-P 347

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
               +   ++ACA LG L  GK  H  V +     +  V ++L+ MY+KC  V+ +  +F
Sbjct: 348 TGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIF 407

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N ++  + V++ +MI+G A+ G    +L+ F+EM S G+KP+  T V V+ A +    V 
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS-VT 466

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
              + +  +  +  +  +    T +VDM  + G +  A KL   I    D   + W  ++
Sbjct: 467 RHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMIS---DRHVITWNAMI 523

Query: 409 SASRLHG 415
                HG
Sbjct: 524 DGYGTHG 530



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 206/413 (49%), Gaps = 8/413 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  +  L  +   ++K+G  +       L++ + +      A ++F+ + +     Y
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALY 115

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY      + AL    +M  + V P  + F  ++K C   ADL  GK+IH  + T
Sbjct: 116 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLIT 175

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
             F  N+   + +V+MY KC  +D A ++FD M  R++VSW +II   +QN    +ALE+
Sbjct: 176 NSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALEL 235

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
                 + + RP+   L +V+ A A +G L+ GK  HG  +R+G      +++AL DMY+
Sbjct: 236 VLRMQDEGQ-RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGSV  +  +F+ +   +VV++ SM+ G  + G    ++ +F +M+  GI P  VT + 
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
            LHAC+  G ++ G + +     +  +  D      ++ M  +  R+D    +A  I  +
Sbjct: 355 ALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD----IASDIFNN 409

Query: 397 PDGGP-LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
            +G   + W  ++     +GRV  A+   +++ +S     +++  +S   ALA
Sbjct: 410 LNGRTHVSWNAMILGYAQNGRVSEALNCFSEM-KSLGMKPDSFTMVSVIPALA 461


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 357/575 (62%), Gaps = 8/575 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           FI  L +C+++  +  VH+++  +G + +    N L+    + K    A  LF++M E +
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERD 65

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            VS++ ++ G++  G  +     F++++     P+ F+   VIKAC     LI G+ IH+
Sbjct: 66  PVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHS 125

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            +   G   +  VCS+LVDMY KC  +D A+++FD M  +++V+ T +I  +A+  + +E
Sbjct: 126 TVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNE 185

Query: 213 ALEMFREFNYQSRDR--PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           +  +F +     RD   P++  + +++NACA LG +   ++ H  V       +  + +A
Sbjct: 186 SWVLFDQMR---RDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTA 242

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           ++DMYAKCGS++ S ++F+R+   +V+++++MI     +G GR +L+LF+ M++ GI PN
Sbjct: 243 MIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPN 302

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            +TF+ +L+ACSH+GLVD+G+Q    M   YG+ PD KHYTC+VD+LGR GRLD+A +L 
Sbjct: 303 RITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLI 362

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           ++++V+ D G  +W   L A R+H +VD+A +A+  L+    Q    Y+ LSN YA AG 
Sbjct: 363 ENMEVEKDEG--IWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGR 420

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W++V  +R+ M +  + K PG +W+E+ +  Y F AG+    R +E+  +L+ L +K++ 
Sbjct: 421 WKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLES 480

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GYV   T  V  DV++E +  I+  HSE+LA+AFGLI+ P G  IRI KNLR+C DCH 
Sbjct: 481 AGYV-PDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHS 539

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             KL+S I +RD +VRD NRFHHF+ G CSCGD+W
Sbjct: 540 FCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 348/561 (62%), Gaps = 8/561 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +HS+ ++ G   +      LIN Y +         AR++FD++L+ NV S+T+++ GY+ 
Sbjct: 293 LHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQ 352

Query: 106 MG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
            G   + AL LF+ M+   V PN FTF++ +KAC+ LA L  G+Q+ TH    GF     
Sbjct: 353 KGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC 412

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V +SL+ MY +   +D AR+ FD++  +N++S+ ++I A+A+N    EALE+F E   Q 
Sbjct: 413 VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG 472

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               +    AS+++  AS+G +  G+  H  V++SG + N  V +AL+ MY++CG++  +
Sbjct: 473 MG-ASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            +VF  + + +V+++TS+I G AK+G    +L+LF++M+  G++PN+VT++ VL ACSH 
Sbjct: 532 FQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHV 591

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLV+EG +H  SMY ++G+IP  +HY C+VD+LGR+G L EA +   S+    D   L+W
Sbjct: 592 GLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADA--LVW 649

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            T L A R+HG +++   A+  +IE       AY+ LSN YA   +W+ V ++R  MK  
Sbjct: 650 RTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEK 709

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            + KE GCSWVE+ ++ + FY G+    + +E+   L+ L  K+K+ GYV      V  D
Sbjct: 710 XLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYV-PNLDFVLHD 768

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           VE+E +E+++  HSE++A+AFGLIS  K   IR+ KNLR+C DCH   K IS    R+ +
Sbjct: 769 VEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREII 828

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD NRFHH ++G CSC ++W
Sbjct: 829 VRDANRFHHIKDGRCSCNEYW 849



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 225/471 (47%), Gaps = 51/471 (10%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMG 107
           VH ++ +S    ++ TLN LI+ Y +  + + A  +F  M    +++S++++++ + N  
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNN 147

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNLVVC 166
               ALL F  M+ N  +PNE+ FA   +ACS    +  G  I   +   G+ Q ++ V 
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVG 207

Query: 167 SSLVDMYGKC-NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             L+DM+ K   D+  A +VF+ M  RN V+WT +I    Q     EA+++F +  +   
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGY 267

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC---GSVN 282
           + P++  L+ VI+ACA++  L+ G+  H   +R G   +  V   L++MYAKC   GS+ 
Sbjct: 268 E-PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC 326

Query: 283 YSDKVFNRISNPSVVTYTSMIVG-AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            + K+F++I + +V ++T+MI G   K G    +LDLF  MI   + PN  TF   L AC
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386

Query: 342 SHSGLVDEGIQ------------------HLDSMYRKYGIIPDAKH------------YT 371
           ++   +  G Q                   L SMY + G I DA+             Y 
Sbjct: 387 ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYN 446

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGG-PLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            V+D   +    +EA +L   I+    G     + +LLS +   G +    +   ++I+S
Sbjct: 447 TVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS 506

Query: 431 ----NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
               NQ V NA +++   Y+  G  E+   +  +M+   +      SW  I
Sbjct: 507 GLKLNQSVCNALISM---YSRCGNIESAFQVFEDMEDRNV-----ISWTSI 549



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 220/425 (51%), Gaps = 18/425 (4%)

Query: 48  SVHSEILKSGFLSNTFTLN-HLINCYVRLKKTQV-ARQLFDEMLEPNVVSYTSLMAGYIN 105
           S+   ++K+G+L +   +   LI+ +V+ +   V A ++F++M E N V++T ++   + 
Sbjct: 189 SIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQ 248

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    A+ LF  M+ +   P+ FT + VI AC+ +  L+ G+Q+H+     G   +  V
Sbjct: 249 FGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 166 CSSLVDMYGKCNDVDG----ARRVFDLMGCRNVVSWTSIIVAHAQN-AQGHEALEMFREF 220
              L++MY KC+ VDG    AR++FD +   NV SWT++I  + Q      EAL++FR  
Sbjct: 309 GCCLINMYAKCS-VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
              +   PN    +S + ACA+L  L  G+      V+ G    + VA++L+ MYA+ G 
Sbjct: 368 -ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGR 426

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ + K F+ +   ++++Y ++I   AK      +L+LFNE+  +G+  +  TF  +L  
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
            +  G + +G + + +   K G+  +      ++ M  R G ++ A+++ + ++   D  
Sbjct: 487 AASIGTIGKG-EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME---DRN 542

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIE----SNQQVANAYVTLSNTYALAGE-WENVH 455
            + W ++++    HG    A+E  ++++E     N+    A ++  +   L  E W++  
Sbjct: 543 VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFK 602

Query: 456 SLRSE 460
           S+ +E
Sbjct: 603 SMYTE 607



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 7/298 (2%)

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           F     PN +  T  +   IN G+   A+   + M+     P+  T++  +K C      
Sbjct: 25  FPTFTNPNPL--TGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVA 203
             G  +H  +     Q + V  +SL+ +Y KC   + A  +F LMG  R+++SW++++  
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSC 142

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            A N  G  AL  F +   ++   PN++  A+   AC++   +  G    G V+++G   
Sbjct: 143 FANNNMGFRALLTFVDM-IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQ 201

Query: 264 NDV-VASALVDMYAKC-GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           +DV V   L+DM+ K  G +  + KVF ++   + VT+T MI    ++G    ++DLF +
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLD 261

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
           MI  G +P+  T  GV+ AC++  L+  G Q L S   ++G+  D     C+++M  +
Sbjct: 262 MIFSGYEPDRFTLSGVISACANMELLLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAK 318


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 342/558 (61%), Gaps = 5/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H   +++GF         L + Y +    + AR +FD M +  VVS+ S+M GY+  G
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P+ A+ +F+KML   + P   T    + AC+ L DL  GK +H  ++      ++ V +
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MY KC  VD A  +F+ +  R  VSW ++I+ +AQN +  EAL  F E       +
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM-K 447

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   + SVI A A L      K  HG+++RS  + N  V +ALVDMY+KCG+++ + K+
Sbjct: 448 PDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKL 507

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ IS+  V+T+ +MI G   +GLGR +LDLF++M    ++PND+T++ V+ ACSHSGLV
Sbjct: 508 FDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLV 567

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           DEG++H  SM + YG+ P   HY  +VD+LGR GR+ EA+   +++ + P  G  ++G  
Sbjct: 568 DEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISP--GITVYGAX 625

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
             A ++H  +++  +A+ +L E N      +V L+N YA   +W  V  +R  M++ G+ 
Sbjct: 626 XGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K PGCS VE+R++ ++FY+G+    +   + + L EL  ++K  GYV   T L+ +DVED
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV-PDTNLI-LDVED 743

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +E+++  HSE+LA+AFGL++   G TI + KNLR+C DCH+  K IS +  R+ +VRD
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRD 803

Query: 588 VNRFHHFRNGSCSCGDFW 605
           + RFHHF+NG CSCGD+W
Sbjct: 804 MQRFHHFKNGICSCGDYW 821



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 190/367 (51%), Gaps = 5/367 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++ + F +N F +  ++N Y + ++   A ++FD M E ++VS+ +++AG+   G 
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL L  +M      P+  T  TV+ A + +  L+ GK IH +    GF   + + ++
Sbjct: 229 AKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTA 288

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L DMY KC  V+ AR +FD M  + VVSW S++  + QN +  +A+ +F +   +  D P
Sbjct: 289 LADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID-P 347

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
               +   ++ACA LG L  GK  H  V +     +  V ++L+ MY+KC  V+ +  +F
Sbjct: 348 TGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIF 407

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N ++  + V++ +MI+G A+ G    +L+ F+EM S G+KP+  T V V+ A +    V 
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS-VT 466

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
              + +  +  +  +  +    T +VDM  + G +  A KL   I    D   + W  ++
Sbjct: 467 RHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMIS---DRHVITWNAMI 523

Query: 409 SASRLHG 415
                HG
Sbjct: 524 DGYGTHG 530



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 206/413 (49%), Gaps = 8/413 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  +  L  +   ++K+G  +       L++ + +      A ++F+ + +     Y
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALY 115

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY      + AL    +M  + V P  + F  ++K C   ADL  GK+IH  + T
Sbjct: 116 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLIT 175

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
             F  N+   + +V+MY KC  +D A ++FD M  R++VSW +II   +QN    +ALE+
Sbjct: 176 NSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALEL 235

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
                 + + RP+   L +V+ A A +G L+ GK  HG  +R+G      +++AL DMY+
Sbjct: 236 VLRMQDEGQ-RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGSV  +  +F+ +   +VV++ SM+ G  + G    ++ +F +M+  GI P  VT + 
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
            LHAC+  G ++ G + +     +  +  D      ++ M  +  R+D    +A  I  +
Sbjct: 355 ALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD----IASDIFNN 409

Query: 397 PDGGP-LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
            +G   + W  ++     +GRV  A+   +++ +S     +++  +S   ALA
Sbjct: 410 LNGRTHVSWNAMILGYAQNGRVSEALNCFSEM-KSLGMKPDSFTMVSVIPALA 461


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 344/553 (62%), Gaps = 4/553 (0%)

Query: 53  ILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           I +  F  +      +I+ Y +    + AR++FD M E NV+S+++++A Y   GQ + A
Sbjct: 157 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 216

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
           L LF+ ML + + P++ T A+++ ACS L +L  G+ IH  +  FG   +  VC++LVDM
Sbjct: 217 LDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 276

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           YGKC +++ AR +FD M  R++V+WT +I  +A+    +E+L +F +   +    P++  
Sbjct: 277 YGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV-VPDKVA 335

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           + +V+ ACA LG +   +     + R   + + ++ +A++DM+AKCG V  + ++F+R+ 
Sbjct: 336 MVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME 395

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             +V+++++MI     +G GR +LDLF  M+  GI PN +T V +L+ACSH+GLV+EG++
Sbjct: 396 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLR 455

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
               M+  Y +  D KHYTCVVD+LGR GRLDEA KL +S+ V+ D G  LWG  L A R
Sbjct: 456 FFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEG--LWGAFLGACR 513

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
            H  V +A +A+  L+E   Q    Y+ LSN YA AG WE+V   R  M +  + K PG 
Sbjct: 514 THKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGW 573

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           +W+E+ ++++ F  G+    R  E+  +L+ L  K++  GYV   T  V  DV++E +  
Sbjct: 574 TWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV-PDTNFVLHDVDEELKIG 632

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           I+  HSE+LA+AFGLI+ P+   IRI+KNLR+C DCH   KL+S I  R  +VRD NRFH
Sbjct: 633 ILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFH 692

Query: 593 HFRNGSCSCGDFW 605
           HF+ G+CSCGD+W
Sbjct: 693 HFKEGACSCGDYW 705



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 233/430 (54%), Gaps = 6/430 (1%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
            L R   R   +T    I+  ++ K+L     +H  + K G   + F    L++ YV+ +
Sbjct: 20  ELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCR 79

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
           + + AR LFD+M E ++V++T ++ GY   G+   +L+LF+KM    V P++    TV+ 
Sbjct: 80  EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 139

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC+ L  +   + I  +I+   FQ ++++ ++++DMY KC  V+ AR +FD M  +NV+S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W+++I A+  + QG +AL++FR     S   P++  LAS++ AC+ L  L  G++ H +V
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFR-MMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIV 258

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            + G + +  V +ALVDMY KC  +  +  +F+++    +VT+T MI G A+ G    SL
Sbjct: 259 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESL 318

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            LF++M   G+ P+ V  V V+ AC+  G + +  + +D   ++     D    T ++DM
Sbjct: 319 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDM 377

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             + G ++ A ++   ++   +   + W  +++A   HG+   A++    ++ S   + N
Sbjct: 378 HAKCGCVESAREIFDRME---EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG-ILPN 433

Query: 437 AYVTLSNTYA 446
               +S  YA
Sbjct: 434 KITLVSLLYA 443



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 176/316 (55%), Gaps = 13/316 (4%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++ G+  +G        F++++     P+ +T   VI+AC  L +L  G+ IH  +  FG
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
              +  VC++LVDMY KC +++ AR +FD M  R++V+WT +I  +A+  + +E+L +F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +   +    P++  + +V+ ACA LG +   ++    + R   + + ++ +A++DMYAKC
Sbjct: 121 KMREEGV-VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G V  + ++F+R+   +V+++++MI     +G GR +LDLF  M+S G+ P+ +T   +L
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 339 HACSHSGLVDEG--IQHLDSMYRKYGIIPDAKHYTC--VVDMLGRTGRLDEAYKLAKSIQ 394
           +ACS    +  G  I H+     K+G+  D  H+ C  +VDM G+   +++A  L   + 
Sbjct: 240 YACSDLKNLQMGRLIHHI---VYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKM- 293

Query: 395 VDPDGGPLLWGTLLSA 410
             P+   + W  ++  
Sbjct: 294 --PERDLVTWTVMIGG 307


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 347/561 (61%), Gaps = 8/561 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +HS+ ++ G   +      LIN Y +         AR++FD++L+ NV S+T+++ GY+ 
Sbjct: 293 LHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQ 352

Query: 106 MG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
            G   + AL LF+ M+   V PN FTF++ +KAC+ LA L  G+Q+ TH    GF     
Sbjct: 353 KGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC 412

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V +SL+ MY +   +D AR+ FD++  +N++S+ ++I A+A+N    EALE+F E   Q 
Sbjct: 413 VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG 472

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               +    AS+++  AS+G +  G+  H  V++SG + N  V +AL+ MY++CG++  +
Sbjct: 473 MG-ASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            +VF  + + +V+++TS+I G AK+G    +L+LF++M+  G++PN VT++ VL ACSH 
Sbjct: 532 FQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHV 591

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLV+EG +H  SMY ++G+IP  +HY C+VD+LGR+G L EA +   S+    D   L+W
Sbjct: 592 GLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADA--LVW 649

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            T L A R+HG +++   A+  +IE       AY+ LSN YA   +W+ V ++R  MK  
Sbjct: 650 RTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEK 709

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            + KE GCSWVE+ ++ + FY G+    + +E+   L+ L  K+K+ GYV      V  D
Sbjct: 710 NLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYV-PNLDFVLHD 768

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           VE+E +E+++  HSE++A+AFGLIS  K   IR+ KNLR+C DCH   K IS    R+ +
Sbjct: 769 VEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREII 828

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD NRFHH ++G CSC ++W
Sbjct: 829 VRDANRFHHIKDGRCSCNEYW 849



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 224/471 (47%), Gaps = 51/471 (10%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMG 107
           VH ++ +S    ++ TLN LI+ Y +  + + A  +F  M    +++S++++++ + N  
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNN 147

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNLVVC 166
               ALL F  M+ N  +PNE+ FA   +ACS    +  G  I   +   G+ Q ++ V 
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVG 207

Query: 167 SSLVDMYGKC-NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             L+DM+ K   D+  A +VF+ M  RN V+WT +I    Q     EA+++F E    S 
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEM-ILSG 266

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC---GSVN 282
             P++  L+ VI+ACA++  L+ G+  H   +R G   +  V   L++MYAKC   GS+ 
Sbjct: 267 YEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC 326

Query: 283 YSDKVFNRISNPSVVTYTSMIVG-AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            + K+F++I + +V ++T+MI G   K G    +LDLF  MI   + PN  TF   L AC
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386

Query: 342 SHSGLVDEGIQ------------------HLDSMYRKYGIIPDAKH------------YT 371
           ++   +  G Q                   L SMY + G I DA+             Y 
Sbjct: 387 ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYN 446

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGG-PLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            V+D   +    +EA +L   I+    G     + +LLS +   G +    +   ++I+S
Sbjct: 447 TVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS 506

Query: 431 ----NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
               NQ V NA +++   Y+  G  E+   +  +M+   +      SW  I
Sbjct: 507 GLKLNQSVCNALISM---YSRCGNIESAFQVFEDMEDRNV-----ISWTSI 549



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 206/389 (52%), Gaps = 13/389 (3%)

Query: 48  SVHSEILKSGFLSNTFTLN-HLINCYVRLKKTQV-ARQLFDEMLEPNVVSYTSLMAGYIN 105
           S+   ++K+G+L +   +   LI+ +V+ +   V A ++F++M E N V++T ++   + 
Sbjct: 189 SIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQ 248

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    A+ LF +M+ +   P+ FT + VI AC+ +  L+ G+Q+H+     G   +  V
Sbjct: 249 FGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 166 CSSLVDMYGKCNDVDG----ARRVFDLMGCRNVVSWTSIIVAHAQN-AQGHEALEMFREF 220
              L++MY KC+ VDG    AR++FD +   NV SWT++I  + Q      EAL++FR  
Sbjct: 309 GCCLINMYAKCS-VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
              +   PN    +S + ACA+L  L  G+      V+ G    + VA++L+ MYA+ G 
Sbjct: 368 -ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGR 426

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ + K F+ +   ++++Y ++I   AK      +L+LFNE+  +G+  +  TF  +L  
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
            +  G + +G + + +   K G+  +      ++ M  R G ++ A+++ + ++   D  
Sbjct: 487 AASIGTIGKG-EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME---DRN 542

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIE 429
            + W ++++    HG    A+E  ++++E
Sbjct: 543 VISWTSIITGFAKHGFATQALELFHKMLE 571



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 147/298 (49%), Gaps = 7/298 (2%)

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           F     PN +  T  +   IN G+   A+   + M+     P+  T++  +K C      
Sbjct: 25  FPTFTNPNPL--TGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVA 203
             G  +H  +     Q + V  +SL+ +Y KC   + A  +F LMG  R+++SW++++  
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSC 142

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            A N  G  AL  F +   ++   PN++  A+   AC++   +  G    G VV++G   
Sbjct: 143 FANNNMGFRALLTFVDM-IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQ 201

Query: 264 NDV-VASALVDMYAKC-GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           +DV V   L+DM+ K  G +  + KVF ++   + VT+T MI    ++G    ++DLF E
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLE 261

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
           MI  G +P+  T  GV+ AC++  L+  G Q L S   ++G+  D     C+++M  +
Sbjct: 262 MILSGYEPDRFTLSGVISACANMELLLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAK 318


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 357/611 (58%), Gaps = 45/611 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLK------------- 76
           F   L+ C  L+ L    S+H  I++ G   + +T N L+N Y +L+             
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 77  -------------------KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
                                   R++F+ M E ++VS+ +++AG    G  +  L + +
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +M G  + P+ FT ++V+   +   D+  GK+IH      G   ++ V SSL+DMY KC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            V  + RVF L+  R+ +SW SII    QN    E L  FR+    ++ +P  +  +S++
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIM 347

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            ACA L  L  GK  HG + R+G + N  +AS+LVDMYAKCG++  + ++F+R+    +V
Sbjct: 348 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV 407

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++T+MI+G A +G    +++LF +M + GIKPN V F+ VL ACSH GLVDE  ++ +SM
Sbjct: 408 SWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSM 467

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R +GI P  +HY  V D+LGR GRL+EAY     + + P G   +W TLLSA R+H  +
Sbjct: 468 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGS--IWATLLSACRVHXNI 525

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           D+A + +N+++E +     AY+ L+N Y+ A  W+     R+ M+R GI K P CSW+E+
Sbjct: 526 DMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 585

Query: 478 RDQTYAFYAGN---ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +++ YAF AG+     +E+  E + +L EL   M++ GYV   T  V  DVE+E ++ +V
Sbjct: 586 KNKVYAFMAGDESHPCYEKIREAMEVLVEL---MEKEGYV-PDTSEVHHDVEEEQKKYLV 641

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSERLA+ FG+I+ P G+TIR+ KNLR+C DCH   K IS IV R+ VVRD +RFHHF
Sbjct: 642 CSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHF 701

Query: 595 RNGSCSCGDFW 605
           +NG+CSCGD+W
Sbjct: 702 KNGTCSCGDYW 712



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 196/412 (47%), Gaps = 42/412 (10%)

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           +LF+ +  P  +++ S++  Y + G P  +L  F  ML + ++P+   F +V+K+C++L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV----------------------- 179
           DL  G+ +H +I   G  ++L   ++L++MY K   +                       
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 180 ---------DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
                    D  R++F++M  +++VSW +II  +A+N    E L M RE    +  +P+ 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG-GANLKPDS 239

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             L+SV+   A    +  GK  HG  +R G + +  VAS+L+DMYAKC  V  S +VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           ++    +++ S+I G  + GL    L  F +M+   IKP   +F  ++ AC+H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            Q L     + G   +    + +VDM  + G +  A ++   +++      + W  ++  
Sbjct: 360 KQ-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR---DMVSWTAMIMG 415

Query: 411 SRLHGRVDIAVEASNQL----IESNQQVANAYVTLSNTYALAGE-WENVHSL 457
             LHG+   A+E   Q+    I+ N     A +T  +   L  E W+  +S+
Sbjct: 416 CALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSM 467


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/567 (39%), Positives = 348/567 (61%), Gaps = 11/567 (1%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPN 92
           L+EC  L  +     VH+ ++ S FL N   L N ++N Y +      AR++FDEM   +
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V++T+L+AG+    +P+ ALLLF +ML     PN FT ++++KA      L  G Q+H 
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHA 213

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
               +G+Q ++ V S+LVDMY +C  +D A+  FD M  ++ VSW ++I  HA+  +G  
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEH 273

Query: 213 ALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL +   +  Q ++ +P     +SV++ACAS+G L  GK  H  +++SG +    + + L
Sbjct: 274 ALHLL--WKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTL 331

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAK GS++ + +VF+R+  P VV++ +M+ G A++GLG+ +LD F +M+  GI+PN+
Sbjct: 332 LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNE 391

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           ++F+ VL ACSHSGL+DEG+ + + M +KY + PD  HY   VD+LGR G LD A +  +
Sbjct: 392 ISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIR 450

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + ++P     +WG LL A R+H  +++ V A+ +  E +   +   + LSN YA AG W
Sbjct: 451 EMPIEPTAA--VWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRW 508

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
            +V  +R  MK +G+ K+P CSWVEI +  + F A +    R  E+     E+  K+KE 
Sbjct: 509 RDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEI 568

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V + V+ + REE +  HSE+LALAF L++ P G  IRI KN+R+C DCH  
Sbjct: 569 GYV-PDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAA 627

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGS 598
            K +S +V+R+ +VRD NRFH FR+GS
Sbjct: 628 IKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 168/308 (54%), Gaps = 15/308 (4%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-LVVCSSLV 170
           AL L Q+  G+LV P+   ++ ++K C+ L  +  G+ +H H+    F  N LV+ + +V
Sbjct: 74  ALDLIQR--GSLV-PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---FNYQSRDR 227
           +MY KC  +D ARR+FD M  +++V+WT++I   +QN +  +AL +F +     +Q    
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQ---- 186

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN   L+S++ A  S   L  G   H   ++ G + +  V SALVDMYA+CG ++ +   
Sbjct: 187 PNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLA 246

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +   S V++ ++I G A+ G G  +L L  +M  +  +P   T+  VL AC+  G +
Sbjct: 247 FDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGAL 306

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G + + +   K G+   A     ++DM  + G +D+A ++   + V PD   + W T+
Sbjct: 307 EQG-KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDV--VSWNTM 362

Query: 408 LSASRLHG 415
           L+    HG
Sbjct: 363 LTGCAQHG 370



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 19/246 (7%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND-VVASALVDMYAKCGSVNYSDK 286
           P+ ++ + ++  C  LG++  G++ H  +V S    N  V+ + +V+MYAKCG ++ + +
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ +    +VT+T++I G ++    R +L LF +M+  G +PN  T   +L A      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP----L 402
           +D G Q L +   KYG        + +VDM  R G +D A       Q+  DG P    +
Sbjct: 205 LDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAA-------QLAFDGMPTKSEV 256

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYVTLSNTYAL-----AGEWENVHS 456
            W  L+S     G  + A+    ++   N Q  +  Y ++ +  A       G+W + H 
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHM 316

Query: 457 LRSEMK 462
           ++S +K
Sbjct: 317 IKSGLK 322


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/574 (40%), Positives = 346/574 (60%), Gaps = 11/574 (1%)

Query: 40  CKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C H  SL+    VH  IL +G   + F    LI  Y  L     AR++FD+  +  +  +
Sbjct: 87  CGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC---SMLADLIT-GKQIHT 152
            +L       G  +  L L+ KM    V  + FT+  V+KAC      AD +T GK+IH 
Sbjct: 147 NALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHA 206

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+   G+  ++ + ++LVDMY +   VD A  VF+ M  RNVVSW+++I  +A+N +  E
Sbjct: 207 HLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFE 266

Query: 213 ALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL  FRE   +++D  PN   + SV+ ACASL  L  G++ HG ++R G +    V SAL
Sbjct: 267 ALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISAL 326

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           V MY +CG ++   +VF+R+ +  VV++ S+I     +G GR ++ +F EM++ G  P  
Sbjct: 327 VTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTP 386

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTFV VL ACSH GLV+EG +  +SM+R +GI P  +HY C+VD+LGR  RLDEA K+ +
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQ 446

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            ++ +P  GP +WG+LL + R+HG V++A  AS +L     + A  YV L++ YA A  W
Sbjct: 447 DMRTEP--GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           + V  ++  ++  G+ K PG  W+E+R + Y+F + +       ++ + L +L   MKE+
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEK 564

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY+    G+++ ++E E +E IV  HSE+LALAFGLI+  KG  IRI KNLR+C DCH  
Sbjct: 565 GYIPQTKGVLY-ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLF 623

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            K IS  +E++ +VRDVNRFH F+NG CSCGD+W
Sbjct: 624 TKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 149/308 (48%), Gaps = 9/308 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P++ T+  +I  C   + L  G ++H HI   G   +  + + L+ MY     VD AR+V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN---YQSRDRPNQHMLASVINACAS 242
           FD    R +  W ++  A      G E L ++ + N    +S      ++L + + +  +
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              L  GK  H  + R G   +  + + LVDMYA+ G V+Y+  VFN +   +VV++++M
Sbjct: 195 ADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAM 254

Query: 303 IVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           I   AK G    +L  F EM+  ++   PN VT V VL AC+    +++G + +     +
Sbjct: 255 IACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG-RLIHGYILR 313

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
            G+       + +V M GR G+LD   ++   +    D   + W +L+S+  +HG    A
Sbjct: 314 RGLDSILPVISALVTMYGRCGKLDVGQRVFDRMH---DRDVVSWNSLISSYGVHGYGRKA 370

Query: 421 VEASNQLI 428
           ++   +++
Sbjct: 371 IQIFEEML 378



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+Q     +I  C     L  G   H  ++ +G + +  +A+ L+ MY+  GSV+Y+ KV
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F++    ++  + ++       G G   L L+ +M   G++ +  T+  VL AC  S   
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 348 DEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            + +   + + +   + G        T +VDM  R G +D A  +   +   P    + W
Sbjct: 195 ADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGM---PVRNVVSW 251

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
             +++    +G+   A+    +++   +  +   VT+
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTM 288


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 345/559 (61%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +    +    LI  Y + +    AR++ DEM E NVVS+T++++GY   G 
Sbjct: 32  VHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGY 91

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +ML +   PNEFTFATV+ +C+  +    G+QIH+ +    F+ ++ V SS
Sbjct: 92  ASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSS 151

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +  ARRVFD +  R+VVS T+II  +AQ     EAL++FR    +   R 
Sbjct: 152 LLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGM-RS 210

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    ASV+ A + L  L  G+  H  V+R+   F  V+ ++L+DMY+KCGS+ YS ++F
Sbjct: 211 NYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIF 270

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
           + +   +V+++ +M+VG +K+GLGR +++LF  M     +KP+ VTF+ VL  CSH G+ 
Sbjct: 271 DSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGME 330

Query: 348 DEGIQHLDSMY-RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D G++    M  +K G  P+ +HY CVVD+ GR GR++EA++  K +  +P     +WG+
Sbjct: 331 DRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA--IWGS 388

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+H  V I    + +L+E   + A  YV LSN YA AG W++V ++R  MK   +
Sbjct: 389 LLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAV 448

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW+E+    + F+A +    R  EV + +REL  K+KE GYV  +   V  DV+
Sbjct: 449 IKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV-PELSCVLYDVD 507

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           DE +E+I+  HSE+LALAFGLI  P G  +RI+KNLR+C DCH+  K +S +  R+  +R
Sbjct: 508 DEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLR 567

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHH   G+CSCGD+W
Sbjct: 568 DKNRFHHIVGGTCSCGDYW 586



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 160/316 (50%), Gaps = 13/316 (4%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + +V+  C     +  G+++H H+    ++  + + + L+ +Y KC  +  ARRV D M 
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT++I  ++Q     EAL +F E    S   PN+   A+V+ +C S      G+
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEM-LMSGTAPNEFTFATVLTSCTSSSGFQLGR 131

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H +V+++  E +  V S+L+DMYAK G +  + +VF+ +    VV+ T++I G A+ G
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 191

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK----YGIIPD 366
           L   +LDLF  +   G++ N VT+  VL A S    +D G Q    + R     Y ++ +
Sbjct: 192 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQN 251

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
           +     ++DM  + G L  + ++  S+   P+   + W  +L     HG    AVE    
Sbjct: 252 S-----LIDMYSKCGSLTYSRRIFDSM---PERTVISWNAMLVGYSKHGLGREAVELFKL 303

Query: 427 LIESNQQVANAYVTLS 442
           + E N+   ++   L+
Sbjct: 304 MKEENKVKPDSVTFLA 319



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 4/190 (2%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L R+  RS+  T A  +  L     L     VHS +L++         N LI+ Y +   
Sbjct: 203 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 262

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIK 136
              +R++FD M E  V+S+ +++ GY   G  + A+ LF+ M   N V P+  TF  V+ 
Sbjct: 263 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 322

Query: 137 ACSMLADLITGKQIHTHI--ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
            CS       G +I   +  +  GF+  +     +VD++G+   V+ A      M     
Sbjct: 323 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 382

Query: 195 VS-WTSIIVA 203
            + W S++ A
Sbjct: 383 AAIWGSLLGA 392


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/578 (39%), Positives = 339/578 (58%), Gaps = 8/578 (1%)

Query: 31  AHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +++   LQ C   K +     +H+ I + G   N      L+N Y        A  LFD 
Sbjct: 2   SYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR 61

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           + + N+  +  ++ GY   G  ++A+ L+ +M    + P++FTF  V+KACS L+ +  G
Sbjct: 62  ISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG 121

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           K+IH  +   G + ++ V ++L+DMY KC  V+ AR+VFD +  R+VV W S++  ++QN
Sbjct: 122 KKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQN 181

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            Q  E+L + R   +    +P +      I A A  G L  GK  HG   R G E ND V
Sbjct: 182 GQPDESLALCRVMAFNGL-KPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKV 240

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +AL+DMYAK GSVN +  +F  +    VV++ +MI G A +G    +LDLF EM  + +
Sbjct: 241 KTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-V 299

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            P+ +TFVGVL ACSH GL++EG  H  SM   + I P  +HYTC++D+LG  GRL+EAY
Sbjct: 300 LPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAY 359

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           KL   ++V+PD G  +WG LL + ++HG V++   A  +L+E        YV LSN YA 
Sbjct: 360 KLIMEMRVEPDAG--VWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQ 417

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           AG+W+ V  LR  M   G+ K   CSW+E+ ++ +AF + +    +   + + L+   + 
Sbjct: 418 AGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKL 477

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           MKE GY   + G VF DVED+ + ++V  HSERLA+AFGLIS   G  + I+KNLR+C D
Sbjct: 478 MKEAGY-APQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICED 536

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   K IS I ER+  +RDVNR+HHF++G CSCGDFW
Sbjct: 537 CHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/585 (39%), Positives = 346/585 (59%), Gaps = 8/585 (1%)

Query: 25  SSCHTKAHFIQ-QLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           S+C    H     L+ C  + +L     V +  +K G +++ F L+ LI+ Y        
Sbjct: 114 SACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAA 173

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR +FD   E  VV + +++A Y+  G     + +F+ ML   V  +E T  +V+ AC  
Sbjct: 174 ARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGR 233

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           + D   GK +  H++  G   N  + ++L+DMY KC ++  ARR+FD M  R+VV+W+++
Sbjct: 234 IGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAM 293

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  + Q  Q  EAL +F E    +R  PN   + SV++ACA LG L +GK  H  V R  
Sbjct: 294 ISGYTQADQCREALGLFSEMQL-ARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKR 352

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
                ++ +ALVD YAKCG ++ + + F  +   +  T+T++I G A  G GR +L+LF+
Sbjct: 353 LSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 412

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M   GI+P DVTF+GVL ACSHS LV+EG +H DSM R YGI P  +HY C+VD+LGR 
Sbjct: 413 SMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRA 472

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G +DEAY+  +++ ++P+   ++W  LLS+  +H  V I  EA  Q+I  N   +  YV 
Sbjct: 473 GLVDEAYQFIRTMPIEPNA--VIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVL 530

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA AG+W++   +R EMK  GI K PGCS +E+    + F+A ++      E+   
Sbjct: 531 LSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQK 590

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           + E+  ++K  GYV   T  V ++VE+  +E  V  HSE+LA+AFGL+ +  G TIR+ K
Sbjct: 591 VEEMIGRIKVAGYV-PNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSK 649

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH   KLIS + +R+ VVRD N FHHF++G+CSC D+W
Sbjct: 650 NLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 345/559 (61%), Gaps = 6/559 (1%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            VH+ ++K+ +    +    LI  Y + +    AR++ DEM E NVVS+T++++GY   G 
Sbjct: 499  VHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGY 558

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL LF +ML +   PNEFTFATV+ +C+  +    G+QIH+ +    F+ ++ V SS
Sbjct: 559  ASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSS 618

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            L+DMY K   +  ARRVFD +  R+VVS T+II  +AQ     EAL++FR    +   R 
Sbjct: 619  LLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGM-RS 677

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            N    ASV+ A + L  L  G+  H  V+R+   F  V+ ++L+DMY+KCGS+ YS ++F
Sbjct: 678  NYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIF 737

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
            + +   +V+++ +M+VG +K+GLGR +++LF  M     +KP+ VTF+ VL  CSH G+ 
Sbjct: 738  DSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGME 797

Query: 348  DEGIQHLDSMY-RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
            D G++    M  +K G  P+ +HY CVVD+ GR GR++EA++  K +  +P     +WG+
Sbjct: 798  DRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA--IWGS 855

Query: 407  LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            LL A R+H  V I    + +L+E   + A  YV LSN YA AG W++V ++R  MK   +
Sbjct: 856  LLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAV 915

Query: 467  HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
             KEPG SW+E+    + F+A +    R  EV + +REL  K+KE GYV  +   V  DV+
Sbjct: 916  IKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV-PELSCVLYDVD 974

Query: 527  DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            DE +E+I+  HSE+LALAFGLI  P G  +RI+KNLR+C DCH+  K +S +  R+  +R
Sbjct: 975  DEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLR 1034

Query: 587  DVNRFHHFRNGSCSCGDFW 605
            D NRFHH   G+CSCGD+W
Sbjct: 1035 DKNRFHHIVGGTCSCGDYW 1053



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 160/316 (50%), Gaps = 13/316 (4%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + +V+  C     +  G+++H H+    ++  + + + L+ +Y KC  +  ARRV D M 
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT++I  ++Q     EAL +F E    S   PN+   A+V+ +C S      G+
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEM-LMSGTAPNEFTFATVLTSCTSSSGFQLGR 598

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H +V+++  E +  V S+L+DMYAK G +  + +VF+ +    VV+ T++I G A+ G
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 658

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK----YGIIPD 366
           L   +LDLF  +   G++ N VT+  VL A S    +D G Q    + R     Y ++ +
Sbjct: 659 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQN 718

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
           +     ++DM  + G L  + ++  S+   P+   + W  +L     HG    AVE    
Sbjct: 719 S-----LIDMYSKCGSLTYSRRIFDSM---PERTVISWNAMLVGYSKHGLGREAVELFKL 770

Query: 427 LIESNQQVANAYVTLS 442
           + E N+   ++   L+
Sbjct: 771 MKEENKVKPDSVTFLA 786



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 4/190 (2%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L R+  RS+  T A  +  L     L     VHS +L++         N LI+ Y +   
Sbjct: 670 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 729

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIK 136
              +R++FD M E  V+S+ +++ GY   G  + A+ LF+ M   N V P+  TF  V+ 
Sbjct: 730 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 789

Query: 137 ACSMLADLITGKQIHTHI--ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
            CS       G +I   +  +  GF+  +     +VD++G+   V+ A      M     
Sbjct: 790 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 849

Query: 195 VS-WTSIIVA 203
            + W S++ A
Sbjct: 850 AAIWGSLLGA 859


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/558 (40%), Positives = 339/558 (60%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH EI+++G          L+  Y +      AR +FD + E NVV++T L+AGY   GQ
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             +AL L + M    V PN+ TFA++++ C+  A L  GK++H +I   G+   L V +S
Sbjct: 230 VDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNS 289

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC  ++ AR++F  +  R+VV+WT+++  +AQ     EA+ +FR    Q   +P
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG-IKP 348

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++    SV+ +C+S   L  GK  H  +V +G   +  + SALV MYAKCGS++ +  VF
Sbjct: 349 DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408

Query: 289 NRISNPSVVTYTSMIVG-AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           N++S  +VV +T++I G  A++G  R +L+ F++M  +GIKP+ VTF  VL AC+H GLV
Sbjct: 409 NQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLV 468

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG +H  SMY  YGI P  +HY+C VD+LGR G L+EA  +  S+   P  GP +WG L
Sbjct: 469 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIP--GPSVWGAL 526

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           LSA R+H  V+    A+  +++ +     AYV LS+ YA AG +E+   +R  M++  + 
Sbjct: 527 LSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVV 586

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SW+E+  + + F+  +       ++   L +L  ++KE GYV   T  V  DV++
Sbjct: 587 KEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYV-PDTRFVLHDVDE 645

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +E I+  HSERLA+ +GL+  P G+ IRI+KNLR+C DCH   K IS +V R+ + RD
Sbjct: 646 EQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARD 705

Query: 588 VNRFHHFRNGSCSCGDFW 605
             RFHHF +G CSCGDFW
Sbjct: 706 AQRFHHFADGVCSCGDFW 723



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 208/396 (52%), Gaps = 11/396 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQEC  L SL     VH+ ILKSG   N +  N L++ Y +      AR++FD + + N+
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T+++  ++   +   A   ++ M      P++ TF +++ A +    L  G+++H  
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHME 173

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G +    V +SLV MY KC D+  AR +FD +  +NVV+WT +I  +AQ  Q   A
Sbjct: 174 IVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVA 233

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+  E   Q+   PN+   AS++  C +   L  GK  H  +++SG      V ++L+ 
Sbjct: 234 LELL-ETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCG +  + K+F+ + +  VVT+T+M+ G A+ G    +++LF  M  +GIKP+ +T
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMT 352

Query: 334 FVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           F  VL +CS    + EG + H   ++  Y +  D    + +V M  + G +D+A  +   
Sbjct: 353 FTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL--DVYLQSALVSMYAKCGSMDDASLVFNQ 410

Query: 393 IQVDPDGGPLLWGTLLSA-SRLHGRVDIAVEASNQL 427
           +    +   + W  +++     HGR   A+E  +Q+
Sbjct: 411 MS---ERNVVAWTAIITGCCAQHGRCREALEYFDQM 443



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 161/330 (48%), Gaps = 11/330 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F  +++ C+ L  L  G+++H  I   G Q N  + ++L+ MY KC  +  ARRVFD + 
Sbjct: 50  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RN+VSWT++I A     +  EA + +         +P++    S++NA  +   L  G+
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQLGQ 168

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  +V +G E    V ++LV MYAKCG ++ +  +F+R+   +VVT+T +I G A+ G
Sbjct: 169 KVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQG 228

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKH 369
               +L+L   M    + PN +TF  +L  C+    ++ G + H   +   YG   +   
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYG--RELWV 286

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV----EASN 425
              ++ M  + G L+EA KL   +   P    + W  +++     G  D A+        
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDL---PHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ 343

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVH 455
           Q I+ ++    + +T  ++ A   E + +H
Sbjct: 344 QGIKPDKMTFTSVLTSCSSPAFLQEGKRIH 373


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/619 (36%), Positives = 354/619 (57%), Gaps = 33/619 (5%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L    +  + +T    I+   E   L++  ++H  ++K+ F S+ F  N LI+ Y  L  
Sbjct: 122 LHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGD 181

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              A  +F +++E ++VS+ S+++G++  G P+ AL LF++M      PN  T   V+ A
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN-------------------- 177
           C+   DL  G+    +IE  G   NL++ ++++DMY KC                     
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW 301

Query: 178 -----------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
                      D D ARRVFD+M   ++ +W ++I ++ QN +  EAL +FRE       
Sbjct: 302 TTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNT 361

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +PN+  LAS + ACA LG +  G   H  + + G + N  + ++L+DMY+KCG +  + +
Sbjct: 362 KPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALE 421

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF  +    V  +++MI G A +G GR ++DLF++M    +KPN VTF  +L ACSHSGL
Sbjct: 422 VFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGL 481

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG    + M   YG++P +KHY C+VD+LGR G L+EA +L + + + P     +WG 
Sbjct: 482 VDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSAS--VWGA 539

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R++G V++A  A ++L+E++     AYV LSN YA AG+W+ V  LR  MK +G+
Sbjct: 540 LLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGL 599

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPGCS +E+    + F  G+      +E+ S L E+  ++K  GYV  ++ L+    E
Sbjct: 600 EKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEE 659

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  +E  + LHSE+LA+A+GLI +     IRI+KNLR+C DCH V KLIS +  RD ++R
Sbjct: 660 EYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLR 719

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFHHF  G+CSC D+W
Sbjct: 720 DRYRFHHFSGGNCSCMDYW 738



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 230/461 (49%), Gaps = 44/461 (9%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           LT  N++ S  +    +  + +C +   L  +H+ +L++G   +  +   L         
Sbjct: 20  LTANNEQKSNPSTVPIL--IDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSP 77

Query: 78  TQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATV 134
           + +  A ++FD++  PN+ ++ +L+  + +  +P   LL+F +ML  +  +PN +TF  V
Sbjct: 78  SSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFV 137

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
           IKA + ++ L+ G+ IH  +    F  +L + +SL+  Y    D+D A  VF  +  +++
Sbjct: 138 IKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDI 197

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSW S+I    Q     EAL++F+    ++  RPN+  +  V++ACA    L  G+ A  
Sbjct: 198 VSWNSMISGFVQGGSPEEALQLFKRMKMENA-RPNRVTMVGVLSACAKRIDLEFGRWACD 256

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG---- 310
            + R+G + N ++++A++DMY KCGS+  + ++F+++    +V++T+MI G AK G    
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 311 -------LGRFSLDLFNEMIS---------------------RGIKPNDVTFVGVLHACS 342
                  + R  +  +N +IS                     +  KPN+VT    L AC+
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G +D G   +    +K GI  +    T ++DM  + G L++A ++  S++        
Sbjct: 377 QLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE---RRDVF 432

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           +W  +++   +HG    A++  +++ E+  +V    VT +N
Sbjct: 433 VWSAMIAGLAMHGHGRAAIDLFSKMQET--KVKPNAVTFTN 471



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 162/359 (45%), Gaps = 45/359 (12%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC-----NDVDG 181
           N  T   +I  C+    L   KQ+H H+   G  ++     S   ++  C     + +D 
Sbjct: 29  NPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFD---PPSATKLFTACALSSPSSLDY 82

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           A +VFD +   N+ +W ++I A A + +  + L +F +  ++S+  PN +    VI A  
Sbjct: 83  ACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAAT 142

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            +  L++G+  HG+V+++    +  ++++L+  Y+  G ++ +  VF++I    +V++ S
Sbjct: 143 EVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNS 202

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD------ 355
           MI G  + G    +L LF  M     +PN VT VGVL AC+    ++ G    D      
Sbjct: 203 MISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNG 262

Query: 356 ------------SMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAK 391
                        MY K G + DA+             +T ++D   + G  D A ++  
Sbjct: 263 IDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRV-- 320

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
              V P      W  L+S+ + +G+   A+    +L + N+      VTL++T A   +
Sbjct: 321 -FDVMPREDITAWNALISSYQQNGKPKEALAIFREL-QLNKNTKPNEVTLASTLAACAQ 377


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/574 (39%), Positives = 343/574 (59%), Gaps = 11/574 (1%)

Query: 40  CKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C H  SL+    VH  IL +G   + F    LI  Y  L     AR++FD+  +  +  +
Sbjct: 87  CGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC----SMLADLITGKQIHT 152
            +L       G  +  L L+ KM    V  + FT+  V+KAC      +  L+ GK+IH 
Sbjct: 147 NALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHA 206

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+   G+  ++ + ++LVDMY +   VD A  VF  M  RNVVSW+++I  +A+N +  E
Sbjct: 207 HLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFE 266

Query: 213 ALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL  FRE   +++D  PN   + SV+ ACASL  L  GK+ HG ++R G +    V SAL
Sbjct: 267 ALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISAL 326

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           V MY +CG +    +VF+R+ +  VV++ S+I     +G G+ ++ +F EM++ G  P  
Sbjct: 327 VTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTFV VL ACSH GLV+EG +  ++M+R +GI P  +HY C+VD+LGR  RLDEA K+ +
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            ++ +P  GP +WG+LL + R+HG V++A  AS +L     + A  YV L++ YA A  W
Sbjct: 447 DMRTEP--GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           + V  ++  ++  G+ K PG  W+E+R + Y+F + +       ++ + L +L   MKE+
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEK 564

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY+    G+++ ++E E +E IV  HSE+LALAFGLI+  KG  IRI KNLR+C DCH  
Sbjct: 565 GYIPQTKGVLY-ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLF 623

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            K IS  +E++ +VRDVNRFH F+NG CSCGD+W
Sbjct: 624 TKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 149/308 (48%), Gaps = 9/308 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P++ T+  +I  C   + L    ++H HI   G   +  + + L+ MY     VD AR+V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN---YQSRDRPNQHMLASVINACAS 242
           FD    R +  W ++  A      G E L ++ + N    +S      ++L + + +  +
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           +  L+ GK  H  + R G   +  + + LVDMYA+ G V+Y+  VF  +   +VV++++M
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAM 254

Query: 303 IVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           I   AK G    +L  F EM+  ++   PN VT V VL AC+    +++G + +     +
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILR 313

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
            G+       + +V M GR G+L+   ++   +    D   + W +L+S+  +HG    A
Sbjct: 314 RGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH---DRDVVSWNSLISSYGVHGYGKKA 370

Query: 421 VEASNQLI 428
           ++   +++
Sbjct: 371 IQIFEEML 378



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+Q     +I  C     L      H  ++ +G + +  +A+ L+ MY+  GSV+Y+ KV
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F++    ++  + ++       G G   L L+ +M   G++ +  T+  VL AC  S   
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 348 DEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
              +   + + +   + G        T +VDM  R G +D A  +   +   P    + W
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGM---PVRNVVSW 251

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
             +++    +G+   A+    +++   +  +   VT+
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTM 288


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/557 (39%), Positives = 337/557 (60%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH EI K+G          L+  Y +      A+ +FD++ E NVV++T L+AGY   GQ
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             +AL L +KM    V PN+ T+ ++++ C+    L  GK++H +I   G+   + V ++
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNA 338

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC  +  AR++F  +  R+VV+WT+++  +AQ     EA+++FR    Q   +P
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI-KP 397

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++    S + +C+S   L  GK  H  +V +G   +  + SALV MYAKCGS++ +  VF
Sbjct: 398 DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N++S  +VV +T+MI G A++G  R +L+ F +M  +GIKP+ VTF  VL AC+H GLV+
Sbjct: 458 NQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVE 517

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +H  SMY  YGI P  +HY+C VD+LGR G L+EA  +  ++   P  GP +WG LL
Sbjct: 518 EGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQP--GPSVWGALL 575

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA R+H  V+    A+  +++ +     AYV LSN YA AG +E+   +R  M++  + K
Sbjct: 576 SACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVK 635

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E+  + + F+  +       E+ + L +L  ++KE+GYV   T  V  DV++E
Sbjct: 636 EPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYV-PDTRFVLHDVDEE 694

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            + + +  HSERLA+ +GL+  P G  IRI+KNLR+C DCH   K IS +V R+ + RD 
Sbjct: 695 QKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDA 754

Query: 589 NRFHHFRNGSCSCGDFW 605
           +RFHHF +G CSCGDFW
Sbjct: 755 HRFHHFVDGVCSCGDFW 771



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 203/395 (51%), Gaps = 10/395 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQEC  L SL     VH+ ILKSG   N +  N L++ Y +      AR++FD + + N+
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T+++  ++   Q   A   ++ M      P++ TF +++ A +    L  G+++H  
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHME 222

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G +    V +SLV MY KC D+  A+ +FD +  +NVV+WT +I  +AQ  Q   A
Sbjct: 223 IAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+  +   Q+   PN+    S++  C +   L  GK  H  +++SG      V +AL+ 
Sbjct: 283 LELLEKMQ-QAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALIT 341

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCG +  + K+F  + +  VVT+T+M+ G A+ G    ++DLF  M  +GIKP+ +T
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMT 401

Query: 334 FVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           F   L +CS    + EG   H   ++  Y +  D    + +V M  + G +D+A  +   
Sbjct: 402 FTSALTSCSSPAFLQEGKSIHQQLVHAGYSL--DVYLQSALVSMYAKCGSMDDARLVFNQ 459

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +    +   + W  +++    HGR   A+E   Q+
Sbjct: 460 MS---ERNVVAWTAMITGCAQHGRCREALEYFEQM 491



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 164/330 (49%), Gaps = 11/330 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F  +++ C+ L  L  G+++H  I   G Q N  + ++L+ MY KC  +  ARRVFD + 
Sbjct: 99  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RN+VSWT++I A     Q  EA + +      +  +P++    S++NA  +   L  G+
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL-AGCKPDKVTFVSLLNAFTNPELLQVGQ 217

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  + ++G E    V ++LV MYAKCG ++ +  +F+++   +VVT+T +I G A+ G
Sbjct: 218 KVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQG 277

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKH 369
               +L+L  +M    + PN +T+  +L  C+    ++ G + H   +   YG   +   
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYG--REIWV 335

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE----ASN 425
              ++ M  + G L EA KL   +   P    + W  +++     G  D A++       
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDL---PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQ 392

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVH 455
           Q I+ ++    + +T  ++ A   E +++H
Sbjct: 393 QGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 25/260 (9%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           +    +T  +  +SC + A     LQE K      S+H +++ +G+  + +  + L++ Y
Sbjct: 395 IKPDKMTFTSALTSCSSPAF----LQEGK------SIHQQLVHAGYSLDVYLQSALVSMY 444

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
            +      AR +F++M E NVV++T+++ G    G+ + AL  F++M    + P++ TF 
Sbjct: 445 AKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFT 504

Query: 133 TVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
           +V+ AC+ +  +  G K   +    +G +  +   S  VD+ G+   ++ A  V   M  
Sbjct: 505 SVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPF 564

Query: 192 RNVVS-WTSIIVA---HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
           +   S W +++ A   H+   +G  A E     N    D  +     ++ N  A+ GR  
Sbjct: 565 QPGPSVWGALLSACRIHSDVERGERAAE-----NVLKLDPDDDGAYVALSNIYAAAGRYE 619

Query: 248 SGKVAHGVVVRSGCEFNDVV 267
             +      VR   E  DVV
Sbjct: 620 DAE-----KVRQVMEKRDVV 634


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/573 (40%), Positives = 341/573 (59%), Gaps = 4/573 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F    + C  L     +H    K GF S+ +  N L+N Y        AR++FD+M+  +
Sbjct: 143 FPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 202

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VVS+ +++  Y     P  A+ LF++M    V PNE T   V+ AC+   DL T KQ+H 
Sbjct: 203 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHK 262

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           +I+  G  ++ V+ S+L+D+Y KC     AR +F+ M  +N+  W  +I  H +++   E
Sbjct: 263 YIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEE 322

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +F E    S  + ++  +AS++ AC  LG L  GK  H  + +   E +  + +ALV
Sbjct: 323 ALSLFNEMQL-SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALV 381

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAKCGS+  + +VF  +    V+T+T++IVG A  G G  +L+LF+EM    +KP+ +
Sbjct: 382 DMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 441

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFVGVL ACSH+GLV+EGI + +SM  KYGI P  +HY C+VDMLGR GR+ EA  L ++
Sbjct: 442 TFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQN 501

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + PD   L+   LLSA R+HG + +A  A+ QLIE + +    YV LSN Y+    WE
Sbjct: 502 MPMAPDYFVLV--GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWE 559

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
               +R  M    I K PGCS +E+    + F  G+    + SE+   L ++ R++K  G
Sbjct: 560 AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAG 619

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV  K+ ++F D++++ +E  + LHSE+LA+AFGL+S   G  IR++KNLR+C DCH   
Sbjct: 620 YVPDKSEVLF-DMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAM 678

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS++  R+ +VRD NRFHHF  GSCSC DFW
Sbjct: 679 KFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 211/394 (53%), Gaps = 12/394 (3%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEPNV 93
           L++C  +  L  +H+++L++    + F+ + ++  +  L  +     AR +F+++  P  
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIV-AFCALHDSGSLPYARLVFNQIPNPTT 105

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            +  S++ GY N   P+ A+L +Q M+   + P+ FTF ++ K+C +L +   GKQ+H H
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCH 162

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               GF  +  + ++L++MY  C  +  AR+VFD M  ++VVSW ++I A+AQ    HEA
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 222

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +++FR     S  +PN+  L +V+ ACA    L + K  H  +  +G  F+ V+ SAL+D
Sbjct: 223 IKLFRRMEIASV-KPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMD 281

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y KCG    +  +FN++   ++  +  MI G  +      +L LFNEM   G+K + VT
Sbjct: 282 VYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 341

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
              +L AC+H G ++ G + L     K  I  D    T +VDM  + G ++ A ++ + +
Sbjct: 342 MASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEM 400

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
              P+   + W  L+    + G+   A+E  +++
Sbjct: 401 ---PEKDVMTWTALIVGLAMCGQGLKALELFHEM 431


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 342/573 (59%), Gaps = 18/573 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKT--------------QVARQLFDEMLEPN 92
           AS+H+  L+SG  ++ F  N L+N Y +L                 +  R++FDEM E +
Sbjct: 78  ASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKD 137

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VVS+ +L+ G    G+   AL L ++M  +   P+ FT ++V+   +  AD+  G ++H 
Sbjct: 138 VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                GF  ++ V SSL+DMY  C   D + +VFD +  R+ + W S++   AQN    E
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDE 257

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +FR     S  +P     +S+I AC +L  L+ GK  H  V+R G + N  ++S+L+
Sbjct: 258 ALGLFRRM-LHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLI 316

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMY KCG+V+ + ++F+RI +P +V++T+MI+G A +G  R +L LF+ M    +KPN +
Sbjct: 317 DMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHI 376

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ VL ACSH+GLVD+G ++ +SM   YGI+P  +H+  + D LGR G+L+EAY     
Sbjct: 377 TFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISG 436

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           +++ P     +W TLL A ++H    +A E + ++ +   +   +++ LSNTY+ +G W 
Sbjct: 437 MKIKPTAS--VWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWN 494

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
               LR  M++ G+ KEP CSW+E++++ + F A +        ++  L     +M  +G
Sbjct: 495 EAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQG 554

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T  VF D+E+E +  ++  HSE+LA+ FG+IS P G TIR+MKNLR+C DCH V 
Sbjct: 555 YV-PNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVT 613

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS IV R+ V+RD NRFHHF++G CSCGDFW
Sbjct: 614 KFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 23/271 (8%)

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV---INACASLGRLVSGKVA 252
           SW   I   A     H A+ +F              +L S+   + +CA+LG    G   
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGS--------------VNYSDKVFNRISNPSVVT 298
           H + +RSG   +   A+AL+++Y K  +              +    KVF+ +    VV+
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + ++++G A+ G    +L L  EM   G KP+  T   VL   +    V  G++ L    
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGME-LHGFA 199

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            + G   D    + ++DM     R D + K+  ++   P    +LW ++L+    +G VD
Sbjct: 200 TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNL---PVRDAILWNSMLAGCAQNGSVD 256

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            A+    +++ S   +    VT S+     G
Sbjct: 257 EALGLFRRMLHSG--IKPMPVTFSSLIPACG 285


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/599 (38%), Positives = 353/599 (58%), Gaps = 9/599 (1%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           FTL   S +  +K      + H +  L +C  L  L  + +  +K+   S+   L  LIN
Sbjct: 11  FTLTKPS-SAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLIN 69

Query: 71  CYVRLKKTQV----ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            +  L  T      A  LFD++L+ +++ +  +  GY     P +A  LF ++L + + P
Sbjct: 70  -FCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLP 128

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +++TF++++KAC+    L  G  +H      G  +N+ +C +L++MY +CND++ AR VF
Sbjct: 129 DDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVF 188

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M    +VS+ +II  +A+++Q +EAL +FRE    S   P    + SVI +CA LG L
Sbjct: 189 DEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQ-ASNIEPTDVTMLSVIMSCALLGAL 247

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  H  V + G +    V +AL+DM+AKCGS+  +  +F  +       +++MIV  
Sbjct: 248 DLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAF 307

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A +G G  ++ +F EM   G++P+++TF+G+L+ACSH+GLV++G  +  SM + YGI P 
Sbjct: 308 ATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPG 367

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            KHY C+VD+LGR G LDEAY     +++     P+LW TLLSA   HG V++A     +
Sbjct: 368 IKHYGCMVDLLGRAGHLDEAYNFVDKLEIK--ATPILWRTLLSACSTHGNVEMAKRVIER 425

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + E +      YV LSN YA  G WE+V+ LR  MK  G+ K PGCS VE+ +  + F++
Sbjct: 426 IFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFS 485

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+ +     E+   L EL +++K  GYV   + +   D+E+E +E ++  HSE+LA+AFG
Sbjct: 486 GDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFG 545

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L++ P G TIR+ KNLR+C DCH+  KLIS I  R  V+RDV RFH F +G CSCGDFW
Sbjct: 546 LLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 355/576 (61%), Gaps = 12/576 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L  L     VH+ ++ S F ++    N ++  Y +    ++ARQ+FDEM   +V
Sbjct: 98  LKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDV 157

Query: 94  VSYTSLMAGYINMG---QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           V++TS++ GY   G       AL+LF +M+ + + PNEF  ++++K C  L   + GKQI
Sbjct: 158 VTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQI 217

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H     +GFQ N+ V SSLVDMY +C ++  +R VFD +  +N VSW ++I   A+  +G
Sbjct: 218 HGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEG 277

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            EAL +F +   +      +   ++++ + ++ G L  GK  H  +++SG +    V + 
Sbjct: 278 EEALGLFVKMQREGFG-ATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNT 336

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKP 329
           L+ MYAK G++  + KVF+R+    VV+  SM++G A++GLG+ +++LF EM +   I+P
Sbjct: 337 LLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEP 396

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ND+TF+ VL ACSH+GL+DEG+ + + M +KYG+ P   HYT VVD+ GR G LD+A   
Sbjct: 397 NDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSF 455

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + + ++P+    +WG LL AS++H   ++   A+ +++E +     A+  LSN YA AG
Sbjct: 456 IEEMPIEPNA--TIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAG 513

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W++V  +R EMK +G+ KEP CSWVEI +  + F A +    + ++V  +   L +K+K
Sbjct: 514 QWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIK 573

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GYV   T  V V V+ + +E  +  HSE+LALAF L++   G  IRIMKN+R+C DCH
Sbjct: 574 EIGYVP-DTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCH 632

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K +S +V+R+ +VRD NRFHHFR+GSCSC D+W
Sbjct: 633 SAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+   +  ++K C+ML  L  GK +HTH+    F+ +LV+ +S++ MY KC  ++ AR+V
Sbjct: 89  PDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQV 148

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASL 243
           FD M  ++VV+WTS+I  ++Q+     A      F    RD  RPN+  L+S++  C  L
Sbjct: 149 FDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFL 208

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           G  V GK  HG   + G + N  V S+LVDMYA+CG +  S  VF+ + + + V++ ++I
Sbjct: 209 GSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALI 268

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
            G A+ G G  +L LF +M   G    + T+  +L + S +G +++G
Sbjct: 269 SGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQG 315


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 353/561 (62%), Gaps = 12/561 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K    S+ F    L++ Y + +    AR+ +D M + +++++ +L++GY   G 
Sbjct: 306 LHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGD 365

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF KM    +  N+ T +TV+K+ + L  +   KQIHT     G   +  V +S
Sbjct: 366 HLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINS 425

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-R 227
           L+D YGKCN +D A ++F+     ++V++TS+I A++Q   G EAL+++ +   Q  D +
Sbjct: 426 LLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQM--QDADIK 483

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+  + +S++NACA+L     GK  H   ++ G   +   +++LV+MYAKCGS+  +D+ 
Sbjct: 484 PDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRA 543

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I N  +V++++MI G A++G G+ +L LFN+M+  G+ PN +T V VL AC+H+GLV
Sbjct: 544 FSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLV 603

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG Q+ + M   +GI P  +HY C++D+LGR+G+L+EA +L  SI  + DG   +WG L
Sbjct: 604 NEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADG--FVWGAL 661

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A+R+H  +++  +A+  L +   + +  +V L+N YA AG WENV  +R  MK + + 
Sbjct: 662 LGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVK 721

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD--- 524
           KEPG SW+EI+D+ Y F  G+    R  E+ + L +L   + + GY    + +V +D   
Sbjct: 722 KEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGY----SSIVEIDIHN 777

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           V+   +E+++  HSE+LA+AFGLI+ P G  IR+ KNLR+C DCH  FK +  IV R+ +
Sbjct: 778 VDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREII 837

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD+NRFHHF++GSCSCGD+W
Sbjct: 838 VRDINRFHHFKDGSCSCGDYW 858



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 200/362 (55%), Gaps = 5/362 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++K GF  +    NHL+  Y + ++   AR+L DE  E +VVS++SL++GY+  G 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + ALL+F +M    V  NEFTF +V+KACSM  DL  G+++H      GF+ +  V ++
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY KC  +D +RR+F  +  RNVVSW ++   + Q+    EA+ +F+E   +S   P
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEM-VRSGIMP 181

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  ++ ++NACA L     G+  HG++++ G + +   A+ALVDMY+K G +  +  VF
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I++P VV++ ++I G   +     +L L +EM   G +PN  T    L AC+  G  +
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q L S   K     D      +VDM  +   +D+A +   S+   P    + W  L+
Sbjct: 302 LGRQ-LHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM---PKKDIIAWNALI 357

Query: 409 SA 410
           S 
Sbjct: 358 SG 359



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 209/394 (53%), Gaps = 9/394 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK G   + F+ N L++ Y +  + + A  +F ++  P+VVS+ +++AG +    
Sbjct: 205 IHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDC 264

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             +AL+L  +M G+   PN FT ++ +KAC+ +     G+Q+H+ +       +L     
Sbjct: 265 NDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVG 324

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  +D ARR +D M  +++++W ++I  ++Q     +A+ +F +   +  D  
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDF- 383

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ  L++V+ + ASL  +   K  H + ++SG   +  V ++L+D Y KC  ++ + K+F
Sbjct: 384 NQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIF 443

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +   +V YTSMI   ++YG G  +L L+ +M    IKP+      +L+AC++    +
Sbjct: 444 EERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYE 503

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H+ ++  K+G + D      +V+M  + G +++A +    I   P+ G + W  +
Sbjct: 504 QGKQLHVHAI--KFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEI---PNRGIVSWSAM 558

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +     HG    A+   NQ++     V   ++TL
Sbjct: 559 IGGYAQHGHGKEALRLFNQMLRDG--VPPNHITL 590



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 140/273 (51%), Gaps = 5/273 (1%)

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           ++H H+  FGF  +  + + LV +Y KC     AR++ D     +VVSW+S++  + QN 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL +F E       + N+    SV+ AC+    L  G+  HG+ V +G E +  VA
Sbjct: 62  FVEEALLVFNEMCLLGV-KCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + LV MYAKCG ++ S ++F  I   +VV++ ++     +  L   ++ LF EM+  GI 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN+ +   +L+AC+     D G + +  +  K G+  D      +VDM  + G ++ A  
Sbjct: 181 PNEFSISIILNACAGLQEGDLG-RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           + + I   PD   + W  +++   LH   D+A+
Sbjct: 240 VFQDI-AHPD--VVSWNAIIAGCVLHDCNDLAL 269


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 349/572 (61%), Gaps = 7/572 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L+ L     +H+ ++K GF  + F    L+  Y +    + A ++FD++ + NV
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T++++GYI +G+ + A+ +F+++L   + P+ FT   V+ AC+ L DL +G+ IH  
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G   N+ V +SLVDMY KC +++ AR VFD M  +++VSW ++I  +A N    EA
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +++F +   ++  +P+ + +  V++ACA LG L  G+   G+V R+   +N V+ +AL+D
Sbjct: 299 IDLFLQMQRENV-KPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +YAKCGS++ + +VF  +     V + ++I G A  G  + S  LF ++   GIKP+  T
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNT 417

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+G+L  C+H+GLVDEG ++ +SMYR + + P  +HY C+VD+LGR G LDEA++L +++
Sbjct: 418 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 477

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++ +   ++WG LL A R+H    +A  A  QLIE     +  YV LSN Y+   +W+ 
Sbjct: 478 PMEANA--IVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDE 535

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  M    I K PGCSW+E+    + F  G+       ++ + L EL +KMK  GY
Sbjct: 536 AAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGY 595

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V  D+E+E +E  +G HSE+LA+AFGLIS      IR++KNLR+C DCH   K
Sbjct: 596 V-PTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIK 654

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LIS I  R+  VRD NRFH FR GSCSC D+W
Sbjct: 655 LISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 197/364 (54%), Gaps = 5/364 (1%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           G   + + LN ++ C      T   R LF ++ +PN+  + +++ G ++      A+  +
Sbjct: 41  GLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFY 100

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
             M      PN FTF  V+KAC+ L DL  G +IHT +   GF  ++ V +SLV +Y KC
Sbjct: 101 GLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC 160

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             ++ A +VFD +  +NVVSWT+II  +    +  EA++MFR    +    P+   +  V
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRL-LEMNLAPDSFTIVRV 219

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           ++AC  LG L SG+  H  ++  G   N  V ++LVDMYAKCG++  +  VF+ +    +
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++ +MI G A  GL + ++DLF +M    +KP+  T VGVL AC+  G ++ G + +  
Sbjct: 280 VSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSG 338

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           +  +   + +    T ++D+  + G +  A+++ K ++   +   ++W  ++S   ++G 
Sbjct: 339 LVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK---EKDRVVWNAIISGLAMNGY 395

Query: 417 VDIA 420
           V I+
Sbjct: 396 VKIS 399


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 346/559 (61%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L  T+    L+  Y +    + AR++ DEM E NVVS+T++++ Y   G 
Sbjct: 73  VHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGH 132

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL +F +M+ +   PNEFTFATV+ +C   + L  GKQIH  I  + +  ++ V SS
Sbjct: 133 SSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSS 192

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   ++ AR +F+ +  R+VVS T+II  +AQ     EALEMF+    +   RP
Sbjct: 193 LLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGM-RP 251

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    AS++ A + L  L  GK AH  V+R    F  V+ ++L+DMY+KCG+++Y+ ++F
Sbjct: 252 NYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLF 311

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLV 347
           + +   + +++ +M+VG +K+GLGR  L+LF  M   + +KP+ VT + VL  CSH  + 
Sbjct: 312 DNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKME 371

Query: 348 DEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D G+   D M   +YGI PD +HY C+VDMLGR GR+DEA++  K +   P  G L  G+
Sbjct: 372 DTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL--GS 429

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+H  VDI     ++LIE   + A  YV LSN YA AG WE+V+++R+ M +  +
Sbjct: 430 LLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAV 489

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW++     + F+A +    R  EVL+ ++E+  KMK+ GYV      V  DV+
Sbjct: 490 TKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV-PDISCVLYDVD 548

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSE+LAL FGLI+  +GI IR+ KNLR+C DCH+  K+ S + ER+  +R
Sbjct: 549 EEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLR 608

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH    G CSCGD+W
Sbjct: 609 DKNRFHQIVKGICSCGDYW 627



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 151/284 (53%), Gaps = 5/284 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C     LA    +H  I+K  + S+ F  + L++ Y +  + + AR++F+ + 
Sbjct: 155 FATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP 214

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E +VVS T+++AGY  +G  + AL +FQ++    + PN  T+A+++ A S LA L  GKQ
Sbjct: 215 ERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQ 274

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
            H H+      +  V+ +SL+DMY KC ++  A+R+FD M  R  +SW +++V ++++  
Sbjct: 275 AHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGL 334

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVV-RSGCEFNDVV 267
           G E LE+FR    + R +P+   L +V++ C+      +G  +  G+V    G + +   
Sbjct: 335 GREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEH 394

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
              +VDM  + G ++ + +   R+ +         ++GA +  L
Sbjct: 395 YGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHL 438



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           H   +++NAC     L  G+  H  ++++       + + L+  Y KC  +  + KV + 
Sbjct: 52  HCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 111

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +VV++T+MI   ++ G    +L +F EM+    KPN+ TF  VL +C  +  +  G
Sbjct: 112 MPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALG 171

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            Q +  +  K+         + ++DM  + G+++EA ++
Sbjct: 172 KQ-IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREI 209



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 3/168 (1%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L  +  R +  T A  +  L     L      H  +L+          N LI+ Y +   
Sbjct: 244 LQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 303

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIK 136
              A++LFD M E   +S+ +++ GY   G  +  L LF+ M     V P+  T   V+ 
Sbjct: 304 LSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 363

Query: 137 ACSMLADLITGKQIHTHIET--FGFQYNLVVCSSLVDMYGKCNDVDGA 182
            CS      TG  I+  +    +G + +      +VDM G+   +D A
Sbjct: 364 GCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEA 411


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/598 (38%), Positives = 360/598 (60%), Gaps = 12/598 (2%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CY 72
            A  +T     +S     H +  L +C  L  L  + +  +K+   S+   L   IN C 
Sbjct: 4   PAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCS 63

Query: 73  VRLKKT--QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
           +    T  Q A  LFD++ +P++V + ++  GY     P  A  LF ++L + ++P+++T
Sbjct: 64  LNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYT 123

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F +++KAC+    L  G+Q+H      G   N+ VC +L++MY  CN++D ARRVFD + 
Sbjct: 124 FPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIW 183

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSG 249
              VV++ ++I  +A+ ++ +EAL +FRE   Q+R+ +P    + SV+++CA LG L  G
Sbjct: 184 EPCVVTYNAMITGYARGSRPNEALSLFREL--QARNLKPTDVTMLSVLSSCALLGALDLG 241

Query: 250 KVAHGVVVRSGCEFNDVVA--SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           K  H  V ++G  FN  V   +AL+DMYAKCGS++ +  VF  ++      +++MI+  A
Sbjct: 242 KWMHEYVKKNG--FNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYA 299

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G G  ++ LF EM   G +P+++TF+G+L+ACSH+GLV+EG ++   M  KYG+IP  
Sbjct: 300 IHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGI 359

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           KHY C+VD+LGR GRL+EAY+    + + P   P+LW TLLSA   HG V++      Q+
Sbjct: 360 KHYGCMVDLLGRAGRLEEAYEFIVGLPIRPT--PILWRTLLSACGSHGNVELGKRVIEQI 417

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
            E +      Y+ LSN  A AG WE+V+ +R  M   G+ K PGCS VE+ +  + F++G
Sbjct: 418 FELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSG 477

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           + +    +++   L EL +++K  GYV   + +   D+EDE +E  +  HSE+LA+ FGL
Sbjct: 478 DGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGL 537

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++ P G TIR++KNLR+C DCH   KLIS I +R  ++RDV RFHHF++G CSC D+W
Sbjct: 538 LNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/562 (39%), Positives = 341/562 (60%), Gaps = 8/562 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++  GF  + F    LIN +  L     AR++FD+  +  +  + +L       G+
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKAC----SMLADLITGKQIHTHIETFGFQYNLV 164
               L L+ +M    V  + FT+  ++KAC     +++ L  GK+IH HI   G+  ++ 
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVH 210

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+DMY +   V  A  VFD M  +NVVSW+++I  +A+N + +EALE+FRE    +
Sbjct: 211 VMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNT 270

Query: 225 RDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
            D  PN   + SV+ ACA+   L  GK+ H  ++R G +    V SAL+ MYA+CG +  
Sbjct: 271 HDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLES 330

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
              +F+R+    VV + S+I     +G GR ++ +F EMI  G  P+ ++F+ VL ACSH
Sbjct: 331 GQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSH 390

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +GLV+EG +  +SM +++GI P  +HY C+VD+LGR  RLDEA K+ + ++++P  GP +
Sbjct: 391 TGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEP--GPKV 448

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG+LL A R+H  V++A  AS +L +     A  YV L++ YA A  W+ V  ++  +  
Sbjct: 449 WGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDS 508

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             + K PG SW+E+R + Y+F + +    +G ++ +LL  L  +MK+RGY   +T LV  
Sbjct: 509 RELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYT-PQTKLVLY 567

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D++ E +E IV  HSE+LA+AFGLI+  KG TIRI KNLR+C DCH V K IS   +R+ 
Sbjct: 568 DLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREI 627

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           +VRD+NRFHHF++G CSCGD+W
Sbjct: 628 MVRDLNRFHHFKDGVCSCGDYW 649



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 154/312 (49%), Gaps = 15/312 (4%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P + T   +I + +    L     +H  +   GF  +  + + L++M+ + + VD AR+V
Sbjct: 67  PTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKV 126

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ--SRDRPNQHMLASVINACASL 243
           FD    R +  W ++  A A   +G++ LE++   N    S DR        ++ AC + 
Sbjct: 127 FDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDR---FTYTYLLKACVAS 183

Query: 244 GRLVS----GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
             LVS    GK  H  ++R G   +  V + L+DMYA+ G V+Y+  VF+ +   +VV++
Sbjct: 184 ECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSW 243

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++MI   AK G    +L+LF EM+  +    PN VT V VL AC+    +++G + + + 
Sbjct: 244 SAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQG-KLIHAY 302

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             + G+       + ++ M  R G+L+    +   +        +LW +L+S+  LHG  
Sbjct: 303 ILRRGLDSILPVISALITMYARCGKLESGQLIFDRMH---KKDVVLWNSLISSYGLHGYG 359

Query: 418 DIAVEASNQLIE 429
             A++   ++I+
Sbjct: 360 RKAIKIFEEMID 371


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/642 (35%), Positives = 366/642 (57%), Gaps = 43/642 (6%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFL 59
           +  T   +F+ A +S         C     F   L+ C  ++ L    SVH  I++ G  
Sbjct: 78  RCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMD 137

Query: 60  SNTFTLNHLINCYVRL----KKTQVA--------------------------------RQ 83
            + +T N L+N Y +L     K  V                                 R+
Sbjct: 138 CDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRR 197

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F+ M   +VVSY +++AGY   G  + AL + ++M    + P+ FT ++V+   S   D
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           +I GK+IH ++   G   ++ + SSLVDMY K   ++ + RVF  + CR+ +SW S++  
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAG 317

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           + QN + +EAL +FR+    ++ +P     +SVI ACA L  L  GK  HG V+R G   
Sbjct: 318 YVQNGRYNEALRLFRQM-VTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           N  +ASALVDMY+KCG++  + K+F+R++    V++T++I+G A +G G  ++ LF EM 
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            +G+KPN V FV VL ACSH GLVDE   + +SM + YG+  + +HY  V D+LGR G+L
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           +EAY     + V+P G   +W TLLS+  +H  +++A + + ++   + +   AYV + N
Sbjct: 497 EEAYNFISKMCVEPTGS--VWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA  G W+ +  LR  M++ G+ K+P CSW+E++++T+ F +G+       ++   L+ 
Sbjct: 555 MYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKA 614

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +  +M++ GYV   +G V  DV++E + E++  HSERLA+AFG+I+   G TIR+ KN+R
Sbjct: 615 VMEQMEKEGYVADTSG-VLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 673

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   K IS I ER+ +VRD +RFHHF  G+CSCGD+W
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 213/450 (47%), Gaps = 47/450 (10%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++ +++  LS+T + + +I+ Y  LK    A  LF  +  P V+++ S++  + +   
Sbjct: 27  LHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSL 85

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  F +M  +   P+   F +V+K+C+M+ DL  G+ +H  I   G   +L   ++
Sbjct: 86  FSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNA 145

Query: 169 LVDMYGKC-------------------------NDV-----------DGARRVFDLMGCR 192
           L++MY K                           DV           D  RRVF++M  +
Sbjct: 146 LMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRK 205

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           +VVS+ +II  +AQ+    +AL M RE    +  +P+   L+SV+   +    ++ GK  
Sbjct: 206 DVVSYNTIIAGYAQSGMYEDALRMVREMG-TTDLKPDSFTLSSVLPIFSEYVDVIKGKEI 264

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG V+R G + +  + S+LVDMYAK   +  S++VF+R+     +++ S++ G  + G  
Sbjct: 265 HGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRY 324

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
             +L LF +M++  +KP  V F  V+ AC+H   +  G Q L     + G   +    + 
Sbjct: 325 NEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ-LHGYVLRGGFGSNIFIASA 383

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR----VDIAVEASNQLI 428
           +VDM  + G +  A K+   + V  +   + W  ++    LHG     V +  E   Q +
Sbjct: 384 LVDMYSKCGNIKAARKIFDRMNVLDE---VSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440

Query: 429 ESNQQVANAYVTLSNTYALAGE-WENVHSL 457
           + NQ    A +T  +   L  E W   +S+
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSM 470



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 187/472 (39%), Gaps = 93/472 (19%)

Query: 133 TVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
           T+IK  + +      KQ+H   I T    +     S ++ +Y     +  A  +F  +  
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHT--SASIVISIYTNLKLLHEALLLFKTLKS 67

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
             V++W S+I      +   +AL  F E     R  P+ ++  SV+ +C  +  L  G+ 
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGES 126

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAK---------CGSV---------NYSD-------- 285
            HG +VR G + +    +AL++MYAK          G+V         N  D        
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETC 186

Query: 286 ----------KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
                     +VF  +    VV+Y ++I G A+ G+   +L +  EM +  +KP+  T  
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            VL   S    V +G +    + RK GI  D    + +VDM  ++ R++++ ++   +  
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT----------- 444
             DG  + W +L++    +GR + A+    Q++ +  +V    V  S+            
Sbjct: 306 R-DG--ISWNSLVAGYVQNGRYNEALRLFRQMVTA--KVKPGAVAFSSVIPACAHLATLH 360

Query: 445 -------YALAGEW-----------------ENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
                  Y L G +                  N+ + R    R  +  E   SW      
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE--VSWT----- 413

Query: 481 TYAFYAGNALFERGSEVLSLLRELER---KMKERGYVGGKTGLVFVDVEDEA 529
             A   G+AL   G E +SL  E++R   K  +  +V   T    V + DEA
Sbjct: 414 --AIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 345/588 (58%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV-------------- 94
           +H  ++K GF+S  F  + L++ Y ++     AR++FDE+ E NVV              
Sbjct: 165 IHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGR 224

Query: 95  -----------------SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                            S+TS++ G+   G  + A+ +F++M    +  +++TF +V+ A
Sbjct: 225 VEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTA 284

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  +  L  GKQ+H +I    ++ N+ V S+LVDMY KC ++  A  VF  M C+NVVSW
Sbjct: 285 CGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSW 344

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T+++V + QN    EA++ F +      + P+   L SVI++CA+L  L  G   H   +
Sbjct: 345 TAMLVGYGQNGYSEEAVKTFSDMQKYGIE-PDDFTLGSVISSCANLASLEEGAQFHARAL 403

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            SG      V++ALV +Y KCGS+  S ++FN IS    VT+T+++ G A++G    ++ 
Sbjct: 404 TSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIG 463

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M++ G+KP+ VTF+GVL ACS +GLV++G Q  +SM  ++GI+P   HYTC++D+ 
Sbjct: 464 LFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLF 523

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R GR++EA      +   PD   + W TLLS+ R +G +DI   A+  L+E +     +
Sbjct: 524 SRAGRIEEARNFINKMPFSPDA--ISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS 581

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LS+ YA  G+WE V  LR +M+  G+ KEPGCSW++ ++Q + F A +       ++
Sbjct: 582 YVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQI 641

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            S L +L  KM + GYV      V  DV D  + +++  HSE+LA+AFGL+ IP G+ IR
Sbjct: 642 YSELEKLNYKMIKEGYVPDMNS-VLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIR 700

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR+C DCH+  K IS I  R+ +VRD  RFH F++G+CSCGDFW
Sbjct: 701 VVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 217/455 (47%), Gaps = 74/455 (16%)

Query: 32  HFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           H+   L+ C    +     ++HS I+K+     TF LN+LI+ Y +L     A ++FD+M
Sbjct: 11  HYCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQM 70

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKM--------------------------LGN 122
             PN+ S+ ++++ Y  +G+      LF  M                            N
Sbjct: 71  PHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 123 LVWPNE-------FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           L+  N+        TF+T++   S    +  G+QIH H+  FGF   + V S LVDMY K
Sbjct: 131 LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSK 190

Query: 176 CNDVDGARRVFD----------------LMGC---------------RNVVSWTSIIVAH 204
              +  AR+VFD                LM C               R+ +SWTS+I   
Sbjct: 191 MGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGF 250

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN    +A+++FRE   ++  + +Q+   SV+ AC  +  L  GK  H  ++R+  + N
Sbjct: 251 TQNGLDRDAIDIFREMKLENL-QMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
             VASALVDMY KC ++  ++ VF +++  +VV++T+M+VG  + G    ++  F++M  
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            GI+P+D T   V+ +C++   ++EG Q H  ++    G+I        +V + G+ G +
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS--GLISFITVSNALVTLYGKCGSI 427

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           +++++L   I    +   + W  L+S     G+ +
Sbjct: 428 EDSHRLFNEISFKDE---VTWTALVSGYAQFGKAN 459



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 152/294 (51%), Gaps = 12/294 (4%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  LQE K       VH+ I+++ +  N F  + L++ Y + K  + A  +F +M   NV
Sbjct: 288 VMALQEGKQ------VHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNV 341

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T+++ GY   G  + A+  F  M    + P++FT  +VI +C+ LA L  G Q H  
Sbjct: 342 VSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHAR 401

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
             T G    + V ++LV +YGKC  ++ + R+F+ +  ++ V+WT+++  +AQ  + +E 
Sbjct: 402 ALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANET 461

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALV 272
           + +F         +P++     V++AC+  G +  G ++   ++   G        + ++
Sbjct: 462 IGLFESMLAHGL-KPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMI 520

Query: 273 DMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEM 322
           D++++ G +  +    N++  +P  +++ +++     YG   +G+++ +   E+
Sbjct: 521 DLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMEL 574


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/557 (39%), Positives = 343/557 (61%), Gaps = 6/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I+KSGF SN +  + L++ Y +    + A+ + + M + +VVS+ SLM G++  G 
Sbjct: 287 VHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGL 346

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF+ M G  +  +++TF +V+  C  +   I  K +H  I   GF+   +V ++
Sbjct: 347 EEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIKTGFENYKLVSNA 404

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY K  D+D A  VF+ M  ++V+SWTS++  +AQN    E+L++F +      + P
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVN-P 463

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q ++AS+++ACA L  L  GK  H   ++SG  ++  V ++LV MYAKCG ++ +D +F
Sbjct: 464 DQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIF 523

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    V+T+T++IVG A+ G GR SL  ++ M+S G +P+ +TF+G+L ACSH+GLVD
Sbjct: 524 VSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVD 583

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG ++   M + YGI P  +HY C++D+ GR+G+LDEA +L   + V PD    +W +LL
Sbjct: 584 EGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDA--TVWKSLL 641

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA R+H  +++A  A+  L E     A  YV LSN Y+ + +W +V  +R  MK  GI K
Sbjct: 642 SACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVK 701

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPGCSW+EI  +   F + +    R +E+ + + E+  ++KE GYV   +     D++ E
Sbjct: 702 EPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMS-FSLHDMDKE 760

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+AFGL++ P    IRI KNLR+C DCH   K IS +  R  ++RD 
Sbjct: 761 GKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDS 820

Query: 589 NRFHHFRNGSCSCGDFW 605
           N FHHFR G CSCGD+W
Sbjct: 821 NCFHHFREGECSCGDYW 837



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 191/351 (54%), Gaps = 10/351 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYINM 106
           +H  ++K+GF  N F +  L++ Y + K    A  LF   E    N V +T+++ GY   
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G    A+  F+ M    V  N++TF T++ ACS +     G+Q+H  I   GF  N+ V 
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           S+LVDMY KC D+  A+ + + M   +VVSW S++V   ++    EAL +F+  N   R+
Sbjct: 304 SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFK--NMHGRN 361

Query: 227 -RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            + + +   SV+N C  +G  ++ K  HG+++++G E   +V++ALVDMYAK G ++ + 
Sbjct: 362 MKIDDYTFPSVLNCCV-VGS-INPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            VF ++    V+++TS++ G A+      SL +F +M   G+ P+      +L AC+   
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 346 LVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           L++ G Q HLD  + K G+      Y  +V M  + G LD+A  +  S+QV
Sbjct: 480 LLEFGKQVHLD--FIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQV 528



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 194/385 (50%), Gaps = 43/385 (11%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL 99
           CK +  L S+H+    S    + +  N L+N   +  +   AR+LFD+M + +  S+ ++
Sbjct: 45  CKFMAFLRSIHTTTAAS--YESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTM 102

Query: 100 MAGYINMGQ-------------------------------PQIALLLFQKMLGNLVWPNE 128
           ++ Y+N+G+                                  A  LF+ M       ++
Sbjct: 103 ISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQ 162

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           FT  +V++ CS L  + TG+ IH  +   GF+ N+ V + LVDMY KC  V  A  +F  
Sbjct: 163 FTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKG 222

Query: 189 MGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           +    +N V WT+++  +AQN  G++A+E FR  + Q  +  NQ+   +++ AC+S+   
Sbjct: 223 LEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVE-CNQYTFPTILTACSSVLAR 281

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+  HG +V+SG   N  V SALVDMYAKCG +  +  +   + +  VV++ S++VG 
Sbjct: 282 CFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGF 341

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL--DSMYRKYGII 364
            ++GL   +L LF  M  R +K +D TF  VL+ C    +  + +  L   + +  Y ++
Sbjct: 342 VRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLV 401

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKL 389
            +A     +VDM  +TG +D AY +
Sbjct: 402 SNA-----LVDMYAKTGDMDCAYTV 421



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 142/266 (53%), Gaps = 11/266 (4%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           I+  SVH  I+K+GF +     N L++ Y +      A  +F++MLE +V+S+TSL+ GY
Sbjct: 381 INPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGY 440

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
                 + +L +F  M    V P++F  A+++ AC+ L  L  GKQ+H      G +++ 
Sbjct: 441 AQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQ 500

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V +SLV MY KC  +D A  +F  M  ++V++WT+IIV +AQN +G  +L+ F +    
Sbjct: 501 SVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLK-FYDAMVS 559

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVV-----VRSGCEFNDVVASALVDMYAKC 278
           S  RP+      ++ AC+  G +  G+     +     ++ G E      + ++D++ + 
Sbjct: 560 SGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH----YACMIDLFGRS 615

Query: 279 GSVNYSDKVFNRIS-NPSVVTYTSMI 303
           G ++ + ++ +++   P    + S++
Sbjct: 616 GKLDEAKQLLDQMDVKPDATVWKSLL 641



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 7/236 (2%)

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR +FD   C++ ++W+SII  + +     EA ++FR    +   + +Q  L SV+  C+
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGW-KASQFTLGSVLRVCS 173

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN--RISNPSVVTY 299
           SLG + +G++ HG VV++G E N  V + LVDMYAKC  V+ ++ +F        + V +
Sbjct: 174 SLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLW 233

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           T+M+ G A+ G G  +++ F  M ++G++ N  TF  +L ACS S L     + +     
Sbjct: 234 TAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS-SVLARCFGEQVHGFIV 292

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           K G   +    + +VDM  + G L  A  + ++++   D   + W +L+     HG
Sbjct: 293 KSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME---DDDVVSWNSLMVGFVRHG 345


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/527 (41%), Positives = 332/527 (62%), Gaps = 10/527 (1%)

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           R++F+ M E ++VS+ +++AG    G     L + ++M G  + P+ FT ++V+   +  
Sbjct: 254 RKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAEN 313

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
            D+  GK+IH      G    + V SSL+DMY KC  V  + RVF L+  R+ +SW SII
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSII 373

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
               QN    E L+ FR+    ++ +P  +  +S++ ACA L  L  GK  HG + R+G 
Sbjct: 374 AGCVQNGLFDEGLKFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGF 432

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           + N  +AS+LVDMYAKCG++  + ++F+R+    +V++T+MI+G A +G    +++LF +
Sbjct: 433 DENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQ 492

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M + GI+PN V F+ VL ACSH+GLVDE  ++ +SM   +GI P  +HY  V D+LGR G
Sbjct: 493 MKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAG 552

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           RL+EAY     + + P G   +W TLLSA R+H  VD+A + +N+++E + +   AY+ L
Sbjct: 553 RLEEAYDFICGMPIGPTGS--VWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILL 610

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN---ALFERGSEVL 498
           +N Y+ A  W+     R+ ++RTGI K P CSW+E+R++ YAF AG+     +E+  E +
Sbjct: 611 ANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAM 670

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
            +L EL   M++ GYV   T  V  DVE+E ++ +V  HSERLA+ FG+I+ P G TIR+
Sbjct: 671 EVLMEL---MEKEGYV-PDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRV 726

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KNLR+C DCH   K IS IV R+ VVRD +RFHHF+NG+CSCGD+W
Sbjct: 727 TKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 112/196 (57%), Gaps = 1/196 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   ++ G  +  +  + LI+ Y +  +   + ++F  + E + +S+ S++AG +  G 
Sbjct: 322 IHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGL 381

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               L  F++ML   + P  ++F++++ AC+ L  L  GKQ+H +I   GF  N+ + SS
Sbjct: 382 FDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASS 441

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC ++  AR++FD M  R++VSWT++I+  A +    +A+E+F +   +  + P
Sbjct: 442 LVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIE-P 500

Query: 229 NQHMLASVINACASLG 244
           N     +V+ AC+  G
Sbjct: 501 NYVAFMAVLTACSHAG 516



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 168/357 (47%), Gaps = 37/357 (10%)

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           +LF+ +  P  +++ S++  Y + G P  +L  F  ML + ++P+   F +V+KAC+ML 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD-------GARRVFDLMGCRN-V 194
           DL  G+ +H +I   G  ++L   ++L++MY K   +        GA +V D M  R   
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           V   S++V +    QG +  ++   FNY    R ++   A V+                 
Sbjct: 183 VRTASVLVGN----QGRKVSDI-EAFNYDVSCR-SREFEAQVLE---------------- 220

Query: 255 VVVRSGCEFNDVVASAL---VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
           +  +   E+ ++ A  L   +   +   SV+   K+F  +    +V++ ++I G A+ GL
Sbjct: 221 IDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGL 280

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
              +L +  EM    +KP+  T   VL   + +  + +G + +     + G+  +    +
Sbjct: 281 YGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG-KEIHGCSIRQGLDAEVYVAS 339

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            ++DM  +  R+ ++Y++  ++  + DG  + W ++++    +G  D  ++   Q++
Sbjct: 340 SLIDMYAKCTRVVDSYRVF-TLLTERDG--ISWNSIIAGCVQNGLFDEGLKFFRQML 393


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/576 (40%), Positives = 339/576 (58%), Gaps = 8/576 (1%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   LQ C   K L     +H++    G   N      L++ Y        AR LFD++ 
Sbjct: 50  YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N+  +  L+ GY   G    A++L+ KML   + P+ FT   V+KACS L+ +  G+ 
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH ++   G++ +L V ++L+DMY KC  V  A RVFD +  R+ V W S++ A+AQN  
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E++ + RE       RP +  L +VI++ A +  L  G+  HG   R G + ND V +
Sbjct: 230 PDESISLCREMAANGV-RPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKT 288

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+DMYAKCGSV  +  +F R+    VV++ ++I G A +GL   +LDLF++M  +  +P
Sbjct: 289 ALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKM-RKEDRP 347

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + +TFVGVL ACS   L+DEG    + M R YGI P  +HYTC++D+LG  G+LDEAY L
Sbjct: 348 DHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDL 407

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            +++ V PD G  +WG LL++ ++HG V++A  A  +LIE     +  YV L+N YA +G
Sbjct: 408 IRNMSVKPDSG--VWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSG 465

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +WE V  LR  M    I K   CSW+E++++ YAF AG+        + + L+ LE  M 
Sbjct: 466 KWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMH 525

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY    TG VF DVE++ +  +V  HSERLA+AFGLIS   G  + I KNLR+C DCH
Sbjct: 526 EAGY-APDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCH 584

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS I+ER+  VRDVNR+H F++G CSCGD W
Sbjct: 585 VAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 145/288 (50%), Gaps = 7/288 (2%)

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           + + +++++C     L  GKQ+H      G  YN  + + LV +Y   N +  AR +FD 
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDK 107

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQSRDRPNQHMLASVINACASLGRLV 247
           +  +N+  W  +I  +A N     A+ ++ +  +Y    RP+   L  V+ AC++L  + 
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGL--RPDNFTLPFVLKACSALSAIG 165

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G+  H  V++SG E +  V +AL+DMYAKCG V  + +VF++I     V + SM+   A
Sbjct: 166 EGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYA 225

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           + G    S+ L  EM + G++P + T V V+ + +    +  G + +     ++G   + 
Sbjct: 226 QNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYG-REIHGFGWRHGFQSND 284

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           K  T ++DM  + G +  A  L + ++   +   + W  +++   +HG
Sbjct: 285 KVKTALIDMYAKCGSVKVALALFERLR---EKRVVSWNAIITGYAMHG 329



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 5/202 (2%)

Query: 227 RPNQHM-LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           +P  H    S++ +C     L  GK  H      G  +N  +A+ LV +YA   S+  + 
Sbjct: 43  QPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNAR 102

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F++I   ++  +  +I G A  G    ++ L+++M+  G++P++ T   VL ACS   
Sbjct: 103 NLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALS 162

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            + EG + +     K G   D      ++DM  + G + +A ++   I V      +LW 
Sbjct: 163 AIGEG-RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVR---DAVLWN 218

Query: 406 TLLSASRLHGRVDIAVEASNQL 427
           ++L+A   +G  D ++    ++
Sbjct: 219 SMLAAYAQNGHPDESISLCREM 240


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 340/557 (61%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H EILK G   + F  N L+N YV+      A +LFDEM E N +S+ +L+ GY    +
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF + L   V PN+FTFA+V++AC+ +  L  G QIH H+   G   ++ V ++
Sbjct: 120 FLEAIELFVR-LHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNA 178

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC  ++ +  +F     RN V+W ++IV H Q   G +AL +F     + R + 
Sbjct: 179 LMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNM-LEYRVQA 237

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +   +S + ACASL  L  G   H + V++  + + VV +AL+DMYAKCGS+  +  VF
Sbjct: 238 TEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVF 297

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++    V++ +MI G + +GLGR +L +F++M    +KP+ +TFVGVL AC+++GL+D
Sbjct: 298 DLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLD 357

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G  +  SM + +GI P  +HYTC+V +LGR G LD+A KL   I   P    ++W  LL
Sbjct: 358 QGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQP--SVMVWRALL 415

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A  +H  +++   ++ +++E   Q    +V LSN YA A  W+NV S+R  MKR G+ K
Sbjct: 416 GACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKK 475

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E +   ++F  G+        +  +L  L  K K+ GY+     +V +DVEDE
Sbjct: 476 EPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPN-YNVVLLDVEDE 534

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++ +HSERLAL+FG+I  P G  IRIMKNLR+C DCH   K IS +V+R+ VVRD+
Sbjct: 535 EKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDI 594

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF+ G CSCGD+W
Sbjct: 595 NRFHHFQEGLCSCGDYW 611



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 159/304 (52%), Gaps = 10/304 (3%)

Query: 115 LFQKMLGNLVWPNEF---TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           L Q+ +G+ V P+EF    +A  ++ C    +   GK +H  I   G   +L   + L++
Sbjct: 23  LTQEFVGH-VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLN 81

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K + +  A ++FD M  RN +S+ ++I  +A++ +  EA+E+F   + +    PNQ 
Sbjct: 82  MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREV--LPNQF 139

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
             ASV+ ACA++  L  G   H  V++ G   +  V++AL+D+YAKCG +  S ++F   
Sbjct: 140 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAES 199

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
            + + VT+ ++IVG  + G G  +L LF  M+   ++  +VT+   L AC+    ++ G+
Sbjct: 200 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 259

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
           Q + S+  K     D      ++DM  + G + +A +L   +    D   + W  ++S  
Sbjct: 260 Q-IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQD--EVSWNAMISGY 315

Query: 412 RLHG 415
            +HG
Sbjct: 316 SMHG 319


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/518 (42%), Positives = 317/518 (61%), Gaps = 35/518 (6%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M+G  V PN+FT +TV+KAC+ +A L  GKQ H +I   GF+ ++VV ++LV MY +C  
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 179 VDGARRVFDLMGCR-------------------------------NVVSWTSIIVAHAQN 207
           ++ A  VFD M  R                               +VVSWT++I  +AQN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
             G E+L +F +   ++  + ++ ++ SV++ACA L  L  G+  H  VV+SG   + VV
Sbjct: 121 GYGDESLNVFNQMR-KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            SALVDMYAK GS+  + +VF+++   + V++ S+I G A++G G  ++ LF +M+  GI
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           KPN+++FVGVL ACSH+GLV+EG  + + M + YGI+PD  HYTC++D+LGR G LDEA 
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
                + V+PD    +WG LL A R+HG  ++A   +  L+    Q+A  YV LSN YA 
Sbjct: 300 NFINGMPVEPDVS--VWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAA 357

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           AG+W++   +R  MK  G+ K+PG SW+E++   +AF AG     +  E+   L  L RK
Sbjct: 358 AGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRK 417

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           MK  GYV  K   V  DVED+ +E  +  HSE+LA+AFG+I+   G TIR+ KNLR+C D
Sbjct: 418 MKAAGYVPNKN-FVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGD 476

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH V K IS    R  VVRD NRFHHF++G CSCGD+W
Sbjct: 477 CHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 138/249 (55%), Gaps = 2/249 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +T T N +I  + + +  + A +LF EM E +VVS+T+++AGY   G    +L +F +M 
Sbjct: 75  STRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMR 134

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              +  + F   +V+ AC+ LA L  G+Q H ++   GF  ++VV S+LVDMY K   ++
Sbjct: 135 KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSME 194

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A +VFD M  RN VSW SII   AQ+ +G++A+ +F +   Q+  +PN+     V++AC
Sbjct: 195 DACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQM-LQAGIKPNEISFVGVLSAC 253

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVV-ASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           +  G +  G+    ++ ++     DV   + ++D+  + G ++ ++   N +     V+ 
Sbjct: 254 SHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSV 313

Query: 300 TSMIVGAAK 308
              ++GA +
Sbjct: 314 WGALLGACR 322



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L +L      H+ +++SGF  +    + L++ Y +    + A Q+FD+M + N 
Sbjct: 149 LSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE 208

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK-QIHT 152
           VS+ S++ G    G+   A+LLF++ML   + PNE +F  V+ ACS    +  G+   + 
Sbjct: 209 VSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNL 268

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA 203
             + +G   ++   + ++D+ G+   +D A    + M     VS W +++ A
Sbjct: 269 MTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGA 320


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/598 (38%), Positives = 353/598 (59%), Gaps = 37/598 (6%)

Query: 37  LQECKHLISLASVHSEI----LKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L+ C   IS+A +  EI    +K+G +S+ F +N L+  Y        AR LFD+M E +
Sbjct: 116 LKACSQ-ISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERD 174

Query: 93  VVSY----------------------TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
           VVS+                      T+++AGYI     +    LF +M+   V+PN+ T
Sbjct: 175 VVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDIT 234

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
             ++I +C  +  +  GK++H +I   GF  +L + ++LVDMYGKC ++  AR +FD M 
Sbjct: 235 MLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMK 294

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD---RPNQHMLASVINACASLGRLV 247
            ++V++WT++I A+AQ      A ++F     Q RD   RPN+  + S+++ CA  G L 
Sbjct: 295 NKDVMTWTAMISAYAQANCIDYAFQLF----VQMRDNGVRPNELTMVSLLSLCAVNGALD 350

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK  H  + + G E + ++ +AL+DMYAKCG ++ + ++F+   +  + T+  M+ G  
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYG 410

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G G  +L LF EM + G+KPND+TF+G LHACSH+GLV EG    + M   +G++P  
Sbjct: 411 MHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKV 470

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HY C+VD+LGR G LDEAYK+ +S+ V P+    +WG +L+A ++H   ++   A+ +L
Sbjct: 471 EHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIA--IWGAMLAACKIHKNSNMGELAAREL 528

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           +    Q     V +SN YA A  W +V  +R  +K TGI KEPG S +E+    + F  G
Sbjct: 529 LALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMG 588

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +       ++  +L E+ +K+KE GY+   T +V  ++++E +E  +  HSE+LA+AFGL
Sbjct: 589 DTAHPLIEKISEMLAEMSKKLKEAGYL-PDTSVVLHNIDEEEKETALNYHSEKLAMAFGL 647

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS   G  IR++KNLR+C DCH V KL+S I +R  +VRD NRFHHFR GSCSCG +W
Sbjct: 648 ISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 168/341 (49%), Gaps = 25/341 (7%)

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            P+ AL  +  M    +  + F   +V+KACS ++    GK+IH      G   ++ V +
Sbjct: 89  HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM----------F 217
           +L+ MY +C  +  AR +FD M  R+VVSW+++I A+     G     +           
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208

Query: 218 REFNYQSRDR-----------PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           R  + +  +R           PN   + S+I +C  +G +  GK  H  ++R+G   +  
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           +A+ALVDMY KCG +  +  +F+ + N  V+T+T+MI   A+     ++  LF +M   G
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++PN++T V +L  C+ +G +D G +   +   K G+  D    T ++DM  + G +  A
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            +L  S  +D D     W  +++   +HG  + A++   ++
Sbjct: 388 QRLF-SEAIDRD--ICTWNVMMAGYGMHGYGEKALKLFTEM 425


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 345/584 (59%), Gaps = 7/584 (1%)

Query: 25  SSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           S C  +      L+ C  + +L     + +  +K G +++ F L+ LI+ Y   +    A
Sbjct: 114 SVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAA 173

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           + LFD + E  VV + +++  Y+  G     + +F+ ML   V  +E T  +V+ AC  +
Sbjct: 174 QLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRI 233

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
            D   GK +  +++  G   N  + ++L+DMY KC ++  ARR+FD M  R+VV+W+++I
Sbjct: 234 GDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMI 293

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
             + Q  Q  EAL +F E      + PN   + SV++ACA LG L +GK  H  + R   
Sbjct: 294 SGYTQADQCREALALFSEMQLAEVE-PNDVTMVSVLSACAVLGALETGKWVHSYIRRKRL 352

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
               ++ +ALVD YAKCG ++ + + F  +   +  T+T++I G A  G GR +L+LF+ 
Sbjct: 353 SLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSS 412

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M    I+P DVTF+GVL ACSHS LV+EG +H DSM + YGI P A+HY CVVD+LGR G
Sbjct: 413 MRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAG 472

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            +DEAY+  +++ ++P+   ++W  LLS+  +H  V+I  EA  Q++  N   +  Y+ L
Sbjct: 473 LIDEAYQFIRTMPIEPNA--VIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILL 530

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           SN YA  G+W+N   +R EMK  GI K PGCS +E+      F+A ++   +  E+   +
Sbjct: 531 SNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKV 590

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
            E+  ++K  GY+   T  V ++V++  +E  V  HSE+LA+AFGL+ +  G TIR+ KN
Sbjct: 591 EEMIDRIKMAGYI-PNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKN 649

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH   KLIS +  R+ VVRD NRFHHF++G+CSC D+W
Sbjct: 650 LRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 188/382 (49%), Gaps = 10/382 (2%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVVS--YTSLMA 101
           L  +H+ ++KSG L+ +    H +        T +  A  LF     P + +  Y  LM 
Sbjct: 32  LPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 102 GYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
             ++ G P+ AL LF +ML    V P++ T A  +K+CS +  L  G+ I  +    G  
Sbjct: 92  ALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLM 151

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +  V SSL+ MY  C DV  A+ +FD +    VV W +II A+ +N    E +EMF+  
Sbjct: 152 ADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGM 211

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
             +     ++  L SV+ AC  +G    GK     V   G   N  + +AL+DMYAKCG 
Sbjct: 212 -LEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGE 270

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  + ++F+ + +  VV +++MI G  +    R +L LF+EM    ++PNDVT V VL A
Sbjct: 271 LGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSA 330

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+  G ++ G + + S  R+  +       T +VD   + G +D+A +  +S+   P   
Sbjct: 331 CAVLGALETG-KWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESM---PVKN 386

Query: 401 PLLWGTLLSASRLHGRVDIAVE 422
              W  L+     +GR   A+E
Sbjct: 387 SWTWTALIKGMATNGRGREALE 408


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/608 (36%), Positives = 361/608 (59%), Gaps = 16/608 (2%)

Query: 10  IFTLAASSLTRQNKRSSCH---------TKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           I    + SLT+ N  +  H           +  +  + +C  L  L  + +  +K+   +
Sbjct: 6   ILQCVSHSLTKLNTEAPRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIKT-HQN 64

Query: 61  NTFTLNHLIN-CYVR--LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           N   L  LIN C     +     A ++FD++ +P++V + ++  GY     P  A+LL  
Sbjct: 65  NPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCS 124

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           ++L + + P+++TF++++KAC+ L  L  GKQ+H      G   N+ VC +L++MY  CN
Sbjct: 125 QVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACN 184

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           DVD ARRVFD +G   VV++ +II + A+N++ +EAL +FRE   +S  +P    +   +
Sbjct: 185 DVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQ-ESGLKPTDVTMLVAL 243

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           ++CA LG L  G+  H  V ++G +    V +AL+DMYAKCGS++ +  VF  +      
Sbjct: 244 SSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQ 303

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            +++MIV  A +G G  ++ +  EM    ++P+++TF+G+L+ACSH+GLV+EG ++  SM
Sbjct: 304 AWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSM 363

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             +YGI+P  KHY C++D+LGR GRL+EA K    + + P   P+LW TLLS+   HG V
Sbjct: 364 THEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKP--TPILWRTLLSSCSSHGNV 421

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++A     ++ E +      YV LSN  A  G W++V+ LR  M   G  K PGCS +E+
Sbjct: 422 EMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEV 481

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
            +  + F++G+ +    + +   L EL +++K  GYV   + + + D+EDE +E ++  H
Sbjct: 482 NNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYH 541

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+ +GL++ P G TIR++KNLR+C DCH+  K IS I  R  ++RDV RFHHF++G
Sbjct: 542 SEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDG 601

Query: 598 SCSCGDFW 605
            CSCGD+W
Sbjct: 602 KCSCGDYW 609


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 344/574 (59%), Gaps = 5/574 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F    + C++      +H    K GF S+T+  N L+N Y        AR++FD+M +  
Sbjct: 91  FPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           VVS+ +++  +    QP  A+ LF +M+ +  V PNE T   V+ AC+   DL   K+IH
Sbjct: 151 VVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIH 210

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            +I+  GF  ++V+ + L+D+Y KC  V  AR +FD    +N+ SW  +I  H +++   
Sbjct: 211 EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYE 270

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL +FRE   +   + ++  +AS++ AC  LG L  GK  H  + +   + +  + +AL
Sbjct: 271 EALLLFREMQTKGI-KGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTAL 329

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           VDMYAKCGS+  + +VF+ +    V+T+T++I+G A  G    +L  F+EM  +G+KP+ 
Sbjct: 330 VDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDA 389

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +TFVGVL ACSH+G VDEGI H +SM   YGI P  +HY  +VD+LGR GR+ EA +L K
Sbjct: 390 ITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIK 449

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           S+ + PD    + G LL A R+HG ++ A  A+ QL+E +   +  YV LSN Y  + +W
Sbjct: 450 SMPMAPD--QFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKW 507

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           E     R  M   G+ K PGCS +E+    + F  G++   + SE+  +L ++  K+K  
Sbjct: 508 EEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNA 567

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV  K+ ++F D+ +E +E  + LHSE+LA+AFGL+S   G  IR++KNLR+C DCH  
Sbjct: 568 GYVPDKSEVLF-DMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSA 626

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KLIS +  R+ +VRD NRFHHF++G+CSC  FW
Sbjct: 627 TKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 205/387 (52%), Gaps = 15/387 (3%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEPNVVSYT--SLM 100
           L  +H+++L++G   + FT + ++  +  L+++   Q AR +F ++  PN  SYT  S++
Sbjct: 4   LKQIHAQMLRTGLFFDPFTASKIV-AFCSLQESGSLQYARLVFSQI--PNPTSYTCNSII 60

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
            G  +    Q ALL +Q+M+   + P+ +TF ++ K+C   ++   GKQIH H    GF 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFA 117

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +    ++L++MY  C  +  AR+VFD M  + VVSW ++I  HAQ  Q +EA+ +F   
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
                 +PN+  L +V+ ACA    L   K  H  +   G   + V+ + L+D+Y KCG 
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           V  +  +F++    ++ ++  MI G  +      +L LF EM ++GIK + VT   +L A
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+H G ++ G + L +  +K  I  D    T +VDM  + G ++ A ++   +   P+  
Sbjct: 298 CTHLGALELG-KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEM---PEKD 353

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQL 427
            + W  L+    + G+ + A++  +++
Sbjct: 354 VMTWTALILGLAMCGQAENALQYFDEM 380



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 12/197 (6%)

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYA--KCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           K  H  ++R+G  F+   AS +V   +  + GS+ Y+  VF++I NP+  T  S+I G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPD 366
              L + +L  + EM+ +G+ P+  TF  +  +C +S    EG Q H  S   K G   D
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHST--KLGFASD 119

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
                 +++M    G L  A K+   ++   D   + W T++       + + AV   ++
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKME---DKTVVSWATMIGVHAQWDQPNEAVRLFDR 176

Query: 427 LIESNQQVANAYVTLSN 443
           +++S + V    VTL N
Sbjct: 177 MMKS-ENVKPNEVTLVN 192


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 353/603 (58%), Gaps = 38/603 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVR---LKKTQV---------- 80
           L+ C  L S      +H+ +LK GF+S+ F    LIN Y +   +   Q+          
Sbjct: 136 LKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDA 195

Query: 81  ------------------ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
                             ARQLFDEM   +VVS+ +++AGY  MG+ + ALLLF+ M   
Sbjct: 196 ISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKA 255

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V PNE T  +V+ AC+    L  G  + + IE  G   NL + ++L+DMY KC D+  A
Sbjct: 256 NVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTA 315

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           R +FD M  R+V+SW  +I  +       EAL +FRE    S   P +    S++ +CA 
Sbjct: 316 RELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREM-LASGVEPTEITFLSILPSCAH 374

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           LG +  GK  H  + ++    +  ++++L+D+YAKCG++  + +VF+ +   S+ ++ +M
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G A +G    + +LF++M S GI+PN++TFVG+L AC H+GLVD G Q   SM + Y 
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYK 494

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           I P ++HY C++D+LGR G  +EA  L ++++V PDG   +WG+LL A R HGRV++   
Sbjct: 495 ISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGA--IWGSLLGACRDHGRVELGEL 552

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
            + +L E       AYV LSN YA AG+W++V  +R+ +   G+ K PGC+ +E+ +  +
Sbjct: 553 VAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVH 612

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F  G+ +  +  ++  +L E++ ++K  G+V   T  V  D+++E +E  +  HSE+LA
Sbjct: 613 EFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFV-ADTSEVLYDMDEEWKEGALSHHSEKLA 671

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           +AFGLIS   G  IRI+KNLR+CR+CH   KLIS I  R+ + RD NRFHHF++GSCSC 
Sbjct: 672 IAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCN 731

Query: 603 DFW 605
           D+W
Sbjct: 732 DYW 734



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 218/436 (50%), Gaps = 42/436 (9%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI--NCYVRLKKTQVARQLFDEMLEP 91
           ++ L +C+ + +   +H+ I+K+G  +  F L+ LI  +   R      A  LF+ + EP
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N+  + S++ G      P +AL+ F +M+ + V PN +TF  ++K+C+ LA    GKQIH
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCND-------------------------------VD 180
            H+   GF  ++ + +SL++MY +  +                               +D
Sbjct: 153 AHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMD 212

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR++FD M  ++VVSW ++I  +AQ  +  EAL +F +   ++   PN+  + SV++AC
Sbjct: 213 RARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR-KANVPPNESTIVSVLSAC 271

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A    L  G      +   G   N  + +AL+DMY+KCG +  + ++F+ +    V+++ 
Sbjct: 272 AQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWN 331

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            MI G       + +L LF EM++ G++P ++TF+ +L +C+H G +D G + + +   K
Sbjct: 332 VMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINK 390

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
                     T ++D+  + G +  A ++   +++        W  ++    +HG+ D A
Sbjct: 391 NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS---WNAMICGLAMHGQADKA 447

Query: 421 VEASNQL----IESNQ 432
            E  +++    IE N+
Sbjct: 448 FELFSKMSSDGIEPNE 463


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 352/589 (59%), Gaps = 7/589 (1%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
           + +++S  H K  F   L+ C  + +L     VH+ ILKSGF SN F  N LI  Y    
Sbjct: 111 KMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCG 170

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
           +  VAR +FD M E ++V++ S+++GY   G     + LF+K+L   +  ++ T  +V+ 
Sbjct: 171 QIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLM 230

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC  LA+L  G+ I  +I + G + N  + +SL+DMY KC  VD AR++FD M  R+VV+
Sbjct: 231 ACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVA 290

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W+++I  +AQ  +  EAL +F E   +    PN+  + SV+ +CA LG   +GK  H  +
Sbjct: 291 WSAMISGYAQADRCKEALNLFHEMQ-KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYI 349

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            +   +    + + L+D YAKCG ++ S +VF  +S  +V T+T++I G A  G G+ +L
Sbjct: 350 KKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMAL 409

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           + F+ M+   +KPNDVTF+GVL ACSH+ LVD+G    +SM R + I P  +HY C+VD+
Sbjct: 410 EFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDI 469

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR G L+EAY+   ++   P+   ++W TLL++ R H  +++A ++   +       + 
Sbjct: 470 LGRAGFLEEAYQFIDNMPFPPNA--VVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSG 527

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            Y+ LSNTYAL G  E+   +RS +K   I K PGCS +E+    + F++ +   +   E
Sbjct: 528 DYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKE 587

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +   L ++ +++K  GYV   T    ++ E+E++E  V  HSE+LA+A+GLI      TI
Sbjct: 588 IHDALDKMMKQIKRLGYVPN-TDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTI 646

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI KNLRMCRDCH+  K IS + ER  +VRD NRFHHF++G CSC D+W
Sbjct: 647 RISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 207/397 (52%), Gaps = 7/397 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVV 94
           LQ+CK    L  VH+ +LK+  L +      ++     L    +  A  +F+ + +P   
Sbjct: 28  LQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESS 87

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           +Y  ++ G      P  ALLLF+KM    V  ++FTF++V+KACS +  L  G+Q+H  I
Sbjct: 88  AYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALI 147

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              GF+ N  V ++L+ MY  C  +  AR VFD M  R++V+W S++  + +N    E +
Sbjct: 148 LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVV 207

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           ++FR+   + R   +   + SV+ AC  L  L  G++    +V  G   N+ + ++L+DM
Sbjct: 208 KLFRKI-LELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDM 266

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAKCG V+ + K+F+ +    VV +++MI G A+    + +L+LF+EM    + PN+VT 
Sbjct: 267 YAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTM 326

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           V VL++C+  G  + G + +    +K  +       T ++D   + G +D + ++ K + 
Sbjct: 327 VSVLYSCAMLGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMS 385

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
                    W  L+     +G   +A+E  + ++E++
Sbjct: 386 FK---NVFTWTALIQGLANNGEGKMALEFFSSMLEND 419


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/608 (38%), Positives = 359/608 (59%), Gaps = 42/608 (6%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVR---LKKTQVARQLFD 86
           F   L+ C  +  L    SVH  I++ G   + +T N L+N Y +   L++    +++FD
Sbjct: 109 FPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFD 168

Query: 87  E--------------------------MLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           E                          M + ++VS+ ++++G    G  + AL++ ++M 
Sbjct: 169 EGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG 228

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+ FT ++V+   +   +L+ GK+IH +    G+  ++ + SSL+DMY KC  VD
Sbjct: 229 NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVD 288

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            + RVF ++   + +SW SII    QN    E L+ F++    ++ +PN    +S++ AC
Sbjct: 289 DSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQM-LIAKIKPNHVSFSSIMPAC 347

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A L  L  GK  HG ++RS  + N  +ASALVDMYAKCG++  +  +F+++    +V++T
Sbjct: 348 AHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWT 407

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +MI+G A +G    ++ LF  M   G+KPN V F+ VL ACSH+GLVDE  ++ +SM + 
Sbjct: 408 AMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQD 467

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           Y IIP  +HY  V D+LGR GRL+EAY+    + ++P G   +W TLL+A R+H  +++A
Sbjct: 468 YRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGS--VWSTLLAACRVHKNIELA 525

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
            + S +L   + Q   AYV LSN Y+ AG W++   LR  M+  G+ K+P CSW+EI+++
Sbjct: 526 EKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNK 585

Query: 481 TYAFYAGN---ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
            +AF AG+     ++R +E L +L E   +M+  GYV   T  V  DVE+E +  ++  H
Sbjct: 586 VHAFVAGDKSHPYYDRINEALKVLLE---QMEREGYVLDTTE-VLHDVEEEQKRYLLCSH 641

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SERLA+ FG+IS P G TIR+ KNLR+C DCH   K IS IV R+ VVRD +RFHHF++G
Sbjct: 642 SERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDG 701

Query: 598 SCSCGDFW 605
            CSCGDFW
Sbjct: 702 KCSCGDFW 709



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 226/492 (45%), Gaps = 75/492 (15%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMG 107
           +H++IL++   S +  L+ +++ Y  L     +  +F+ +  P   +++ S++  Y + G
Sbjct: 27  LHAQILRTSLPSPSL-LSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHG 85

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               +L  F +ML +  +P+   F +V+K+C+++ DL  G+ +H  I   G  ++L  C+
Sbjct: 86  LFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCN 145

Query: 168 SLVDMY------------------GKCNDV-----------DGARRVFDLMGCRNVVSWT 198
           +L++MY                  GK +DV              R+VF++M  R++VSW 
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWN 205

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQN    +AL M RE    +  RP+   L+SV+   A    L+ GK  HG  +R
Sbjct: 206 TVISGNAQNGMHEDALMMVREMG-NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR 264

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           +G + +  + S+L+DMYAKC  V+ S +VF  +     +++ S+I G  + G+    L  
Sbjct: 265 NGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKF 324

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ------------------HLDSMYRK 360
           F +M+   IKPN V+F  ++ AC+H   +  G Q                   L  MY K
Sbjct: 325 FQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAK 384

Query: 361 YGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQVD---PDGGPLLWG 405
            G I  A+             +T ++      G   +A  L K ++V+   P+    +  
Sbjct: 385 CGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFM-- 442

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANA--YVTLSNTYALAGEWENVHSLRSEMKR 463
            +L+A    G VD A +  N + +  + +     Y  +++     G  E  +   S+M  
Sbjct: 443 AVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDM-- 500

Query: 464 TGIHKEP-GCSW 474
              H EP G  W
Sbjct: 501 ---HIEPTGSVW 509



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R    T +  +    E  +L+    +H   +++G+ ++ F  + LI+ Y +  +   + +
Sbjct: 233 RPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 292

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F  + + + +S+ S++AG +  G     L  FQ+ML   + PN  +F++++ AC+ L  
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           L  GKQ+H +I    F  N+ + S+LVDMY KC ++  AR +FD M   ++VSWT++I+ 
Sbjct: 353 LHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMG 412

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +A +   ++A+ +F+    +   +PN     +V+ AC+  G
Sbjct: 413 YALHGHAYDAISLFKRMEVEGV-KPNYVAFMAVLTACSHAG 452


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 331/558 (59%), Gaps = 4/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H+ + K GF ++    N L+  Y++        +L++ M++ +++S+ + ++G  + G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
                L +F  ML     PN +TF +++ +CS L D+  G+Q+H HI       N  VC+
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++ A   F+ +  R++ +WT II  +AQ  QG +AL  FR+   Q   +
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQ-QEGVK 614

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+  LA  ++ C+SL  L  G+  H +V +SG   +  V SALVDMYAKCG +  ++ +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +     + + ++I G A+ G G  +L  F  M+  GI P+ VTF G+L ACSH GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG +H +SMYR +GI P   H  C+VD+LGR G+ DE     + +Q+  +   L+W T+
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNA--LIWETV 792

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L AS++H  + +  +A+N+L E   +  ++Y+ LSN +A  G W++V  +RS M   G+ 
Sbjct: 793 LGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVK 852

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPGCSWVE   Q + F + +    +  E+   L EL+R++    YV  KT  V  +V +
Sbjct: 853 KEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYV-PKTEYVLHNVGE 911

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             ++E +  HSERLAL F LIS      IRI KNLR+CRDCHDV K IS I  ++ VVRD
Sbjct: 912 TEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRD 971

Query: 588 VNRFHHFRNGSCSCGDFW 605
           V RFHHF+NG+CSC DFW
Sbjct: 972 VRRFHHFKNGACSCNDFW 989



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 206/414 (49%), Gaps = 9/414 (2%)

Query: 32  HFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           ++   L+EC    SL    ++H  I+K     ++     L+N Y + + +  AR +  +M
Sbjct: 114 YYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKM 173

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
            + +VVS+T+L+ G +  G    ++ LFQ+M    + PNEFT AT +KACS+   L  GK
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H      G   +L V S+LVD+Y KC +++ A ++F  M  +N V+W  ++  +AQ  
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
                L++F     +   + N+  L +V+  CA+   L  G+V H ++++ G E N+ + 
Sbjct: 294 DVTGVLKLFCSM-MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
             LVDMY+KCG    +  VF  I  P +V ++++I    + G    S+ LF+ M      
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN  T   +L A +++G +  G Q + +   KYG   D      +V M  + G + +  K
Sbjct: 413 PNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L +S+ VD D   + W   LS     G  D  +     ++E    + N Y  +S
Sbjct: 472 LYESM-VDRD--LISWNAYLSGLHDCGMYDRPLTIFYHMLEEG-FIPNMYTFIS 521



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 158/309 (51%), Gaps = 4/309 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C   ++L     +H++  K G L + F  + L++ Y +  + ++A ++F  M E N 
Sbjct: 220 LKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQND 279

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++  L+ GY   G     L LF  M+   V  NEFT  TV+K C+   +L  G+ IH+ 
Sbjct: 280 VTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSL 339

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G++ N  +   LVDMY KC     A  VF  +   ++V W+++I    Q  Q  E+
Sbjct: 340 IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEES 399

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +++F          PNQ+ + S+++A  + G L  G+  H  V + G E +  V++ALV 
Sbjct: 400 IKLFHLMRL-GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVT 458

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY K G V+   K++  + +  ++++ + + G    G+    L +F  M+  G  PN  T
Sbjct: 459 MYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYT 518

Query: 334 FVGVLHACS 342
           F+ +L +CS
Sbjct: 519 FISILGSCS 527


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/573 (39%), Positives = 339/573 (59%), Gaps = 36/573 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           + N +I  Y++      A++LFD M   N +S+  ++AGY   G+ + AL L Q +  N 
Sbjct: 354 SWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNG 413

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC------- 176
           + P+  +  +   ACS +  L TG+Q+H+     G Q+N  VC++L+ MYGKC       
Sbjct: 414 MLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVR 473

Query: 177 ------------------------NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                                   N ++ AR +FD M  R+VVSWT+II A+AQ  +G E
Sbjct: 474 QVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDE 533

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           A+E F+   ++  ++PN  +L  +++ C  LG    G+  H V ++ G +   +VA+AL+
Sbjct: 534 AVEFFKTMLHE-HEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALM 592

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            MY KCG  + S KVF+ +    + T+ + I G A++GLGR ++ ++  M S G+ PN+V
Sbjct: 593 SMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEV 651

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFVG+L+ACSH+GLVDEG Q   SM R YG+ P  +HY C+VD+LGRTG +  A K    
Sbjct: 652 TFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYD 711

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + ++PD   ++W  LL A ++H   +I   A+ +L  +    A  YV LSN Y+  G W 
Sbjct: 712 MPIEPD--TVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWV 769

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  LR  MK+ G+ KEPGCSW++IR++ ++F  G+   E+  E+   L++L   ++  G
Sbjct: 770 EVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTG 829

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T  V  D+++E +E  +  HSE+LA+A+GL+  PKG+ I+IMKNLR+C DCH   
Sbjct: 830 YV-PDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFI 888

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +S + +RD  +RD NRFHHFRNGSCSCGDFW
Sbjct: 889 KFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 170/331 (51%), Gaps = 17/331 (5%)

Query: 53  ILKSGFLSNTFTLNHLINCYVR-LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           +LK+GF S+      ++N Y R      +A + FD M+E N  ++++++A   + G+   
Sbjct: 249 VLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDA 308

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADL-ITGKQIHTHIETFGFQYNLVVCSSLV 170
           A+ ++ +     + P++    T +  C  + +  I  +QI   I        +V  ++++
Sbjct: 309 AIAVYGRDPVKSI-PSQTALLTGLARCGRITEARILFEQIPDPI--------VVSWNAMI 359

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
             Y +   VD A+ +FD M  RN +SW  +I  +AQN +  EAL++ +   +++   P+ 
Sbjct: 360 TGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL-HRNGMLPSL 418

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             L S   AC+ +G L +G+  H + V++GC+FN  V +AL+ MY KC ++ Y  +VFNR
Sbjct: 419 SSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNR 478

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +     V++ S I    +  +   +  +F+ M+SR +    V++  ++ A + +   DE 
Sbjct: 479 MRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDV----VSWTTIISAYAQAERGDEA 534

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           ++   +M  ++   P++   T ++ + G  G
Sbjct: 535 VEFFKTMLHEHE-KPNSPILTILLSVCGGLG 564



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 61/316 (19%)

Query: 40  CKHLISLAS---VHSEILKSGFLSNTFTLNHLINCY---------------VRLKKT--- 78
           C H+ +L +   VHS  +K+G   N++  N LI+ Y               +R+K T   
Sbjct: 428 CSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSW 487

Query: 79  -------------QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
                        + AR +FD ML  +VVS+T++++ Y    +   A+  F+ ML     
Sbjct: 488 NSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEK 547

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           PN      ++  C  L     G+QIHT     G    L+V ++L+ MY KC   D + +V
Sbjct: 548 PNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKV 606

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R++ +W + I   AQ+  G EA++M+          PN+     ++NAC     
Sbjct: 607 FDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGV-LPNEVTFVGLLNAC----- 660

Query: 246 LVSGKVAHGVVVRSGCEFNDVVA------------SALVDMYAKCGSVNYSDK-VFNRIS 292
                 +H  +V  G +F   ++            + +VD+  + G V  ++K +++   
Sbjct: 661 ------SHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPI 714

Query: 293 NPSVVTYTSMIVGAAK 308
            P  V +++++ GA K
Sbjct: 715 EPDTVIWSALL-GACK 729



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 155/326 (47%), Gaps = 45/326 (13%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ-----------P 109
           NT   N +++CYV+     +AR+LFD M   +V S+ S++ GY +  Q           P
Sbjct: 125 NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP 184

Query: 110 QIALLLFQKMLGNLV--------W------------PNEFTFATVIKACSMLADLITGKQ 149
           Q  L+ +  M+   V        W            P++  FA+V+ A + L DL   + 
Sbjct: 185 QRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEV 244

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGK-CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           +   +   GF+ ++V+ +S++++Y +  + +D A + FD M  RN  +W+++I A +   
Sbjct: 245 LRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGG 304

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASL--GRLVSGKVAHGVVVRSGCEFNDV 266
           +   A+ ++     +S   P+Q  L + +  C  +   R++  ++   +VV         
Sbjct: 305 RIDAAIAVYGRDPVKS--IPSQTALLTGLARCGRITEARILFEQIPDPIVVS-------- 354

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +A++  Y + G V+ + ++F+R+   + +++  MI G A+ G    +LDL   +   G
Sbjct: 355 -WNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNG 413

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQ 352
           + P+  +      ACSH G ++ G Q
Sbjct: 414 MLPSLSSLTSSFLACSHIGALETGRQ 439



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 175/425 (41%), Gaps = 87/425 (20%)

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           RL + + AR++FD M   +++++ S+++ Y N G  + A +LF  + G     N  T   
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGG----NVRTATI 100

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++   + L  ++  +++   +     + N V  +++V  Y +  D+  ARR+FD M  R+
Sbjct: 101 LLSGYARLGRVLDARRVFDGMP----ERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRD 156

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFN------------------------------YQ 223
           V SW S++  +  + Q  +A  +F++                                + 
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH 216

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+Q   ASV++A   L  L   +V   +V+++G E + V+ ++++++Y +  S   
Sbjct: 217 EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASAL- 275

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
                                          ++  F+ M+ R    N+ T+  ++ A SH
Sbjct: 276 -----------------------------DIAIKFFDGMVER----NEYTWSTMIAALSH 302

Query: 344 SGLVDEGIQHLDSMYRKYGIIP--DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
            G +D  I         YG  P       T ++  L R GR+ EA  L + I   PD   
Sbjct: 303 GGRIDAAIA-------VYGRDPVKSIPSQTALLTGLARCGRITEARILFEQI---PDPIV 352

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           + W  +++    +G VD A E  +++   N     ++  +   YA  G  E    L   +
Sbjct: 353 VSWNAMITGYMQNGMVDEAKELFDRMPFRN---TISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 462 KRTGI 466
            R G+
Sbjct: 410 HRNGM 414


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 341/559 (61%), Gaps = 5/559 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++KSG  S  F  N ++N Y +      A+ +FD M   N VS+ S++AG++  G 
Sbjct: 215 VHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGL 274

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A  LF +M    V   +  FATVIK C+ + ++   KQ+H  +   G  ++L + ++
Sbjct: 275 DLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTA 334

Query: 169 LVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+  Y KC+++D A ++F +M G +NVVSWT+II  + QN +   A+ +F +   +    
Sbjct: 335 LMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVE 394

Query: 228 PNQHMLASVINACAS-LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           PN+   +SV+NACA+    +  GK  H   ++SG      V+SALV MYAK G++  +++
Sbjct: 395 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE 454

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF R  +  +V++ SMI G A++G G+ SL +F EM S+ ++ + +TF+GV+ AC+H+GL
Sbjct: 455 VFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGL 514

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V+EG ++ D M + Y I+P  +HY+C+VD+  R G L++A  L   +      G  +W T
Sbjct: 515 VNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPF--PAGATIWRT 572

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL+A R+H  V +   A+ +LI    Q + AYV LSN YA AG W+    +R  M    +
Sbjct: 573 LLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKV 632

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KE G SW+E++++T++F AG+    +   +   L EL  ++K+ GY    T  V  DVE
Sbjct: 633 KKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYY-PDTKYVLHDVE 691

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E I+  HSERLA+AFGLI+ P G  I+I+KNLR+C DCH V KLIS I  RD VVR
Sbjct: 692 EEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVR 751

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF+ GSCSCGD+W
Sbjct: 752 DSNRFHHFKGGSCSCGDYW 770



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 193/369 (52%), Gaps = 6/369 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH + +K GF+ +      L++ Y++ +  +   ++FDEM   NVVS+TSL+AGY   G 
Sbjct: 114 VHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGL 173

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF +M    + PN FTFA V+   +    +  G Q+HT +   G    + V +S
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +V+MY K   V  A+ VFD M  RN VSW S+I     N    EA E+F     +   + 
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV-KL 292

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            Q + A+VI  CA++  +   K  H  V+++G +F+  + +AL+  Y+KC  ++ + K+F
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF 352

Query: 289 NRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGL 346
             +    +VV++T++I G  + G    +++LF +M    G++PN+ TF  VL+AC+    
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTA 412

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
             E  +   S   K G        + +V M  + G ++ A ++ K  QVD D   + W +
Sbjct: 413 SVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRD--LVSWNS 469

Query: 407 LLSASRLHG 415
           ++S    HG
Sbjct: 470 MISGYAQHG 478



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 168/344 (48%), Gaps = 10/344 (2%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           ++QLFDE  +  +     L+  +    Q + AL LF  +  +    +  + + V+K C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L D I GKQ+H      GF  ++ V +SLVDMY K   V+   RVFD M  +NVVSWTS+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +  + QN    +AL++F +   +   +PN    A+V+   A+ G +  G   H +V++SG
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            +    V +++V+MY+K   V+ +  VF+ + N + V++ SMI G    GL   + +LF 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M   G+K     F  V+  C++   +    Q L     K G   D    T ++    + 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ-LHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 381 GRLDEAYKL---AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
             +D+A+KL      +Q       + W  ++S    +GR D A+
Sbjct: 343 SEIDDAFKLFCMMHGVQ-----NVVSWTAIISGYVQNGRTDRAM 381


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/651 (38%), Positives = 357/651 (54%), Gaps = 50/651 (7%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCH---------TKAHFIQQLQECKHLISLASVHS 51
           M K  T+  +F L  +S  +   +S             ++  +  L  C H+  +  VH+
Sbjct: 1   MVKFCTKTCLFILPKTSYCQLQTQSFIPFSVRQEQKILESRLVSVLHGCTHINQVKQVHA 60

Query: 52  EILKSGFLSNTFTLNHLINCYVRL--KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
            I + G     F L  L+    +L        R +F ++  PN   +T+L+ GY   G  
Sbjct: 61  HIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPF 120

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCSS 168
             ++LL+  M    + P  FTF  ++KACS   D+  G+Q+HT  I   GF  +L V ++
Sbjct: 121 MESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNT 180

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA------------------------- 203
           L+DMY KC  +    RVFD M  R+V+SWTS+IVA                         
Sbjct: 181 LIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAW 240

Query: 204 ------HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                 +AQNA+  EALE+F      +  + ++  L  VI+ACA LG          V  
Sbjct: 241 TAMVTGYAQNARPREALEVFERMQ-AAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAE 299

Query: 258 RS--GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +S  G   N VV SAL+DMYAKCGSV  + KVF R+   +V +Y+SMIVG A +GL   +
Sbjct: 300 QSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAA 359

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           ++LF+EM+   IKPN VTF+GVL ACSH+G+V++G Q    M   +G+ P   HY C+VD
Sbjct: 360 MELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVD 419

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +LGR GRL+EA  L K + ++P GG  +WG LL A R+HG  D+A  A++ L E      
Sbjct: 420 LLGRAGRLEEALNLVKMMPMNPHGG--VWGALLGACRIHGNPDMAQIAASHLFELEPNGI 477

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ-TYAFYAGNALFERG 494
             Y+ LSN YA AG W++V  +R  M+  G+ K PGCSWVE +    + F+AG+    + 
Sbjct: 478 GNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKS 537

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
            E+   L +L  ++K  GY    + + + D+ DE ++ ++  HSE+LALAFGL++   G 
Sbjct: 538 REIKQALEDLLDRLKYLGYQPNLSSVAY-DISDEEKKRLLMSHSEKLALAFGLLTTNAGC 596

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           TIRI+KNLR+C DCH V    S I  R+ VVRD  RFHHFR+G CSCG+FW
Sbjct: 597 TIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/543 (40%), Positives = 333/543 (61%), Gaps = 5/543 (0%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN- 122
           + N +I  Y +L + + AR+LFDEM + +  S+ + ++GY+   QP+ AL LF+ M  + 
Sbjct: 155 SWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHE 214

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
               N+FT ++ + A + +  L  GK+IH ++       + VV S+L+D+YGKC  +D A
Sbjct: 215 RSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEA 274

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           R +FD M  R+VVSWT++I    ++ +  E   +FR+   QS  RPN++  A V+NACA 
Sbjct: 275 RGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDL-MQSGVRPNEYTFAGVLNACAD 333

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
                 GK  HG ++ +G +      SALV MY+KCG+   + +VFN +  P +V++TS+
Sbjct: 334 HAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSL 393

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           IVG A+ G    +L  F  ++  G KP+ VT+VGVL AC+H+GLVD+G+++  S+  K+G
Sbjct: 394 IVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHG 453

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           ++  A HY CV+D+L R+GR  EA  +  ++ V PD    LW +LL   R+HG +++A  
Sbjct: 454 LMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPD--KFLWASLLGGCRIHGNLELAKR 511

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           A+  L E   +    Y+TL+N YA AG W  V ++R +M   GI K+PG SW+EI+ Q +
Sbjct: 512 AAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVH 571

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F  G+    + S++   L EL +K+KE GYV   T  V  DVE+E +E+ +  HSE+LA
Sbjct: 572 VFLVGDTSHPKTSDIHEFLGELSKKIKEEGYV-PDTNFVLHDVEEEQKEQNLVYHSEKLA 630

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           + FG+IS P G  I++ KNLR C DCH   K IS IV+R   VRD NRFH F +GSCSC 
Sbjct: 631 VVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCK 690

Query: 603 DFW 605
           D+W
Sbjct: 691 DYW 693



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 168/343 (48%), Gaps = 43/343 (12%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+   ++T+I AC     L  G+++H H +   F   + + + L+DMY KC  +  A+ +
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 186 FDLMGCRNVVSWTSIIVAHAQ----------------------NA---------QGHEAL 214
           FD MG R++ SW ++IV +A+                      NA         Q  EAL
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           E+FR      R   N+  L+S + A A++  L  GK  HG ++R+    ++VV SAL+D+
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCGS++ +  +F+++ +  VV++T+MI    + G       LF +++  G++PN+ TF
Sbjct: 265 YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKY----GIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            GVL+AC+     D   +HL      Y    G  P +   + +V M  + G    A ++ 
Sbjct: 325 AGVLNACA-----DHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVF 379

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
             +   PD   + W +L+     +G+ D A+     L++S  +
Sbjct: 380 NEMH-QPD--LVSWTSLIVGYAQNGQPDEALHFFELLLQSGTK 419



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           Q  +  EA+E+     +++  RP+  + +++I AC     L  G+  H     S      
Sbjct: 67  QQKRVKEAVELL----HRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGV 122

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            +++ L+DMYAKCGS+  +  +F+ + +  + ++ +MIVG AK G    +  LF+EM  R
Sbjct: 123 FISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR 182


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 340/576 (59%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           + + L +C +L  L    ++H+ I  S F  +   LN ++N Y +    + A+ LFD+M 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             ++VS+T L++GY   GQ   AL LF KML     PNEFT ++++KA         G+Q
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H     +G+  N+ V SSL+DMY +   +  A+ +F+ +  +NVVSW ++I  HA+  +
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G   + +F +   Q  + P     +SV  ACAS G L  GK  H  V++SG +    + +
Sbjct: 288 GEHVMRLFLQMLRQGFE-PTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGN 346

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L+DMYAK GS+  + KVF R+    +V++ S+I G A++GLG  +L LF +M+   ++P
Sbjct: 347 TLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQP 406

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++TF+ VL ACSHSGL+DEG Q+   + +K+ I     H+  VVD+LGR GRL+EA K 
Sbjct: 407 NEITFLSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKF 465

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + + + P     +WG LL + R+H  +D+ V A+ Q+ E +   +  +V LSN YA AG
Sbjct: 466 IEEMPIKPTAA--VWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAG 523

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
              +   +R  MK +G+ KEP CSWVEI ++ + F A +       E+  +  ++  K+K
Sbjct: 524 RLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIK 583

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GYV   + ++F  +  + RE  +  HSE+LALAF ++  P G+TIRI KN+R+C DCH
Sbjct: 584 EIGYVPDTSHVLFF-MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCH 642

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             FK  S ++ R+ +VRD NRFHHF +G CSC D+W
Sbjct: 643 SAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 171/308 (55%), Gaps = 5/308 (1%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    ++ ++  C+ L  L  G+ IH HI++  F+ +LV+ + +++MY KC  ++ A+ +
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  +++VSWT +I  ++Q+ Q  EAL +F +  +    +PN+  L+S++ A  +   
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF-QPNEFTLSSLLKASGTGPS 221

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  H   ++ G + N  V S+L+DMYA+   +  +  +FN ++  +VV++ ++I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G G   + LF +M+ +G +P   T+  V  AC+ SG +++G + + +   K G  P
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG-KWVHAHVIKSGGQP 340

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A     ++DM  ++G + +A K+ + + V  D   + W +++S    HG    A++   
Sbjct: 341 IAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQD--IVSWNSIISGYAQHGLGAEALQLFE 397

Query: 426 QLIESNQQ 433
           Q++++  Q
Sbjct: 398 QMLKAKVQ 405


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 346/611 (56%), Gaps = 45/611 (7%)

Query: 32  HFIQQ------LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           HFI        + + K +  L  +H+ + + G   +      L   Y  L +   +  LF
Sbjct: 26  HFISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALF 85

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
                P+V  +T+++ G+   G  + AL  + +ML   V PN FTF++++K C +     
Sbjct: 86  GRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEP--- 142

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV-------------------------- 179
            GK +H+     GF  +L V + L+D+Y +  DV                          
Sbjct: 143 -GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYA 201

Query: 180 -----DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
                D AR +FD M  R+ V W  +I  + QN   +EAL +FR    +++ +PN+  + 
Sbjct: 202 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVL 260

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           SV++AC  LG L SG+  H  +  +G +FN  V +ALVDMY+KCGS+  +  VF++I + 
Sbjct: 261 SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 320

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
            VV + SMIVG A +G  + +L LF  M   G+ P ++TF+G+L AC HSG V EG    
Sbjct: 321 DVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF 380

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
           + M  +YGI P  +HY C+V++LGR G +++AY+L K++ ++PD  P+LWGTLL A RLH
Sbjct: 381 NKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD--PVLWGTLLGACRLH 438

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G++ +  +    L++ N   +  Y+ LSN YA  G W+ V  LR+ MK +G+ KEPGCS 
Sbjct: 439 GKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSS 498

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +E+ ++ + F AG     +  E+  +L E+   +K  GY   +T +V  D+ +  +E  +
Sbjct: 499 IEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYT-PQTDIVLHDIGETEKERSL 557

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
            +HSE+LA+AFGLI+   G TI+I+KNLR+C DCH+V KLIS I  R  VVRD NRFHHF
Sbjct: 558 EVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHF 617

Query: 595 RNGSCSCGDFW 605
            NGSCSCGD+W
Sbjct: 618 VNGSCSCGDYW 628


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 344/588 (58%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV-------------- 94
           +H +I+K GF +  F  + L++ Y ++    VA Q+FDE+ E NVV              
Sbjct: 160 IHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGM 219

Query: 95  -----------------SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                            S+T+++ G I  G    A+ LF+ M    +  +++TF +V+ A
Sbjct: 220 VKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTA 279

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  L  L  GK+IHT I   G+ +N+ V S+LVDMY KC  V  A  VF  M  +NVVSW
Sbjct: 280 CGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSW 339

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T+++V + QN    EA+ +F +      + P+   L SVI++CA+L  L  G   H   +
Sbjct: 340 TAMLVGYGQNGFSEEAVRVFCDMQRNGIE-PDDFTLGSVISSCANLASLEEGAQFHCQAL 398

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            SG      V++AL+ +Y KCGS+  S+++F+ +S    V++T+++ G A++G    ++D
Sbjct: 399 VSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETID 458

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M+ +G+KP+ VTF+ VL ACS +GLV+ G Q+ +SM + +GIIP + HYTC++D+ 
Sbjct: 459 LFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLF 518

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR GRL+EA      +   PD   + W TLLS+ RL+G  +I   A+  L+E + Q    
Sbjct: 519 GRAGRLEEAKNFINKMPFSPD--SIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAG 576

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           Y+ LS+ YA  G+W NV  LR  M+  G  KEPG SW++ + + Y F A +       ++
Sbjct: 577 YILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQI 636

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            + L +L  KM E GYV   +  V  DVED  + +++  HSE+LA+AFGL+ IP G+ IR
Sbjct: 637 YAELEKLNHKMIEEGYVPDASS-VLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIR 695

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR+C DCH+  K IS I +R+ +VRD  RFH F++G+CSCGDFW
Sbjct: 696 VVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 126/271 (46%), Gaps = 9/271 (3%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ++ +L  P  F +  +I A S L ++   + +   +     Q N    ++++  Y K  D
Sbjct: 31  IIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMP----QPNSFSWNTMLSAYSKSGD 86

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +   + +F +M  R+ VSW S+I  +       EA++ +           N+   ++++ 
Sbjct: 87  LSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLL 146

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
             +S G +  G+  HG +V+ G      V S+LVDMYAK G V+ + +VF+ +   +VV 
Sbjct: 147 LVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVM 206

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           Y +MI G  + G+ + S  LF+ M  R    + +++  ++     +GL  E +     M 
Sbjct: 207 YNTMITGLLRSGMVKDSKRLFHGMKER----DSISWTTMITGLIQNGLEAEAMDLFRDM- 261

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           R+ G+  D   +  V+   G    L E  ++
Sbjct: 262 RQEGMAMDQYTFGSVLTACGGLRALKEGKEI 292



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 33/187 (17%)

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV--- 296
           C         K  H ++++S       + + L++ Y+K G++ Y+  VF+++  P+    
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 297 ----------------------------VTYTSMIVGAAKYGLGRFSLDLFNEMISRGI- 327
                                       V++ S+I G   YG    ++  +N M+  G+ 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
             N +TF  +L   S  G VD G Q +     K+G        + +VDM  + G +  A 
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQ-IHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 388 KLAKSIQ 394
           ++   +Q
Sbjct: 194 QVFDEVQ 200


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 335/578 (57%), Gaps = 23/578 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVR-----LKKTQVA--------------RQLFDE 87
           AS+H+  ++SG  ++ FT N L+N Y +     L  T VA              R++FDE
Sbjct: 70  ASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDE 129

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M+E +VVS+ +L+ G    G+   AL   +KM      P+ FT +TV+   +  AD+  G
Sbjct: 130 MIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRG 189

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            ++H      GF  ++ V SSL+DMY  C   D + +VFD +  R+ + W S++   AQN
Sbjct: 190 LEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQN 249

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               EAL +FR    Q+  RP     +S+I  C +L  L  GK  H  V+  G E N  +
Sbjct: 250 GSVEEALGIFRRM-LQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFI 308

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           +S+L+DMY KCG ++ +  +F+++S+P VV++T+MI+G A +G  R +L LF  M     
Sbjct: 309 SSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNA 368

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           KPN +TF+ VL ACSH+GLVD+G ++  SM   YGI+P  +H+  + D LGR G LDEAY
Sbjct: 369 KPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAY 428

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
                +Q+ P     +W TLL A R+H    +A E + +++E   +   ++V LSN Y+ 
Sbjct: 429 NFISKMQIKPTAS--VWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSA 486

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           +G W     LR  M++ G+ K+P CSW+E++ + + F A +        ++  L     +
Sbjct: 487 SGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQ 546

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           M   G+V   T  VF D+E+E +  ++  HSE+LA+ FG+IS P G  IR+MKNLR+C D
Sbjct: 547 MAREGHV-PNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCID 605

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH V K IS + +R+ VVRD NRFHHF++G+CSCGDFW
Sbjct: 606 CHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 1/232 (0%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+  R    T +  +    EC  +     VH    ++GF S+ F  + LI+ Y    +
Sbjct: 161 MCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTR 220

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
           T  + ++FD +   + + + SL+AG    G  + AL +F++ML   V P   TF+++I  
Sbjct: 221 TDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPV 280

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  LA L  GKQ+H ++   GF+ N+ + SSL+DMY KC ++  A  +FD M   +VVSW
Sbjct: 281 CGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSW 340

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           T++I+ +A +    EAL +F      +  +PN     +V+ AC+  G +  G
Sbjct: 341 TAMIMGYALHGPAREALVLFERMELGNA-KPNHITFLAVLTACSHAGLVDKG 391



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 33/284 (11%)

Query: 197 WTSIIVAHAQNAQGH--EALEMFREFNYQSRDRPN-QHMLASVINACASLGRLVSGKVAH 253
           W   I A A  A+GH  +A+ +F      +  R +    L + + +CA+LG    G   H
Sbjct: 16  WAQQIRAAA--AEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLH 73

Query: 254 GVVVRSGCEFNDVVASALVDMYAK--CGSVNYSD-----------------KVFNRISNP 294
            + +RSG   +   A+AL+++Y K  C  ++ +                  KVF+ +   
Sbjct: 74  ALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIER 133

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
            VV++ ++++G A+ G    +L    +M   G +P+  T   VL   +    V  G++  
Sbjct: 134 DVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVH 193

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
              +R  G   D    + ++DM     R D + K+  ++ V      +LW +LL+    +
Sbjct: 194 GFAFRN-GFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDH---ILWNSLLAGCAQN 249

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
           G V+ A+    +++++   V    VT S+   + G   N+ SLR
Sbjct: 250 GSVEEALGIFRRMLQAG--VRPVPVTFSSLIPVCG---NLASLR 288


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 342/576 (59%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHL--ISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            +  LQ C +   +SL  +VH   +K+     T   N L++ Y +      A  +FD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              VV++TSL+A Y   G    A+ LF +M    V P+ FT  TV+ AC+    L  GK 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H +I     Q N+ VC++L+DMY KC  ++ A  VF  M  ++++SW ++I  +++N+ 
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
            +EAL +F +   + +  P+   LA ++ ACASL  L  GK  HG ++R+G   +  VA+
Sbjct: 181 PNEALSLFGDMVLEMK--PDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVAN 238

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDMY KCG    +  +F+ I    ++T+T MI G   +G G  ++  FNEM   GI+P
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ++V+F+ +L+ACSHSGL+DEG +  + M  +  + P  +HY C+VD+L R+G+L  AYK 
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKF 358

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            KS+ ++PD    +WG LLS  R+H  V +A + +  + E   +    YV L+NTYA A 
Sbjct: 359 IKSMPIEPDA--TIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAE 416

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +WE V  LR ++ R G+ K PGCSW+E++ + + F AGN+   +  ++  LL+ L  KMK
Sbjct: 417 KWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMK 476

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY   KT    ++ +   +E  +  HSE+LA+AFG++++P   TIR+ KNLR+C DCH
Sbjct: 477 EEGYF-PKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCH 535

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++ K IS  + R+ V+RD NRFHHF++G C C  FW
Sbjct: 536 EMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 342/609 (56%), Gaps = 33/609 (5%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +T    I+   E   L    S+H   +KS   S+ F  N LI+CY        A ++F  
Sbjct: 134 YTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 193

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           + E +VVS+ S++ G++  G P  AL LF+KM    V  +  T   V+ AC+ + DL  G
Sbjct: 194 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFG 253

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD-------------------- 187
           +++ ++IE      NL + ++++DMY KC  ++ A+R+FD                    
Sbjct: 254 RRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 313

Query: 188 -----------LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                       M  +++V+W ++I A+ QN + +EAL +F E   Q   + NQ  L S 
Sbjct: 314 EDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVST 373

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           ++ACA +G L  G+  H  + ++G + N  V SAL+ MY+KCG +  + +VFN +    V
Sbjct: 374 LSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDV 433

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
             +++MI G A +G G  ++D+F +M    +KPN VTF  V  ACSH+GLVDE       
Sbjct: 434 FVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYK 493

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M   YGI+P+ KHY C+VD+LGR+G L++A K  +++ + P     +WG LL A ++H  
Sbjct: 494 MESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS--VWGALLGACKIHAN 551

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           + +A  A  +L+E   +   A+V LSN YA +G+W+NV  LR  M+ TG+ KEPGCS +E
Sbjct: 552 LSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIE 611

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           I    + F +G+       +V   L E+  K+K  GY    + ++ +  E+E +E+ + L
Sbjct: 612 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNL 671

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+ +GLIS      IR++KNLRMC DCH V KLIS +  R+ +VRD  RFHHFRN
Sbjct: 672 HSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRN 731

Query: 597 GSCSCGDFW 605
           G CSC DFW
Sbjct: 732 GQCSCNDFW 740



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 229/479 (47%), Gaps = 51/479 (10%)

Query: 4   SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTF 63
           SL R+  F+   +  T  N+RS      H I  +  C  L  L   H+ ++++G  S+ +
Sbjct: 11  SLPRHPNFS-NPNQPTTNNERSR-----HTISLIDRCSSLRQLKQTHAHMIRTGMFSDPY 64

Query: 64  TLNHL--INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           + + L  I         + AR++FDE+ +PN  ++ +L+  Y +   P  ++  F  M+ 
Sbjct: 65  SASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVS 124

Query: 122 --NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             +  +PN++TF  +IKA + ++ L  G+ +H          ++ V +SL+  Y  C D+
Sbjct: 125 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDL 184

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-LASVIN 238
           D A +VF  +  ++VVSW S+I    Q     +ALE+F++   +S D    H+ +  V++
Sbjct: 185 DSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM--ESEDVKASHVTMVGVLS 242

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           ACA +  L  G+     +  +    N  +A+A++DMY KCGS+  + ++F+ +     VT
Sbjct: 243 ACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 299 YTSMIVGAA-------------------------------KYGLGRFSLDLFNEM-ISRG 326
           +T+M+ G A                               + G    +L +F+E+ + + 
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           IK N +T V  L AC+  G ++ G + + S  +K GI  +    + ++ M  + G L++A
Sbjct: 363 IKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKA 421

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
            ++  S++        +W  ++    +HG    AV+   ++ E+N  V    VT +N +
Sbjct: 422 REVFNSVE---KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEAN--VKPNGVTFTNVF 475



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 168/367 (45%), Gaps = 37/367 (10%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL--VDMYGKCNDVDGARRVFDLMG 190
           ++I  CS L  L   KQ H H+   G   +    S L  +        ++ AR+VFD + 
Sbjct: 36  SLIDRCSSLRQL---KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIP 92

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREF-NYQSRDRPNQHMLASVINACASLGRLVSG 249
             N  +W ++I A+A       ++  F +  + +S+  PN++    +I A A +  L  G
Sbjct: 93  QPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLG 152

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  HG+ ++S    +  VA++L+  Y  CG ++ + KVF  I    VV++ SMI G  + 
Sbjct: 153 QSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 212

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH----------SGLVDEGIQHLD---- 355
           G    +L+LF +M S  +K + VT VGVL AC+              ++E   +++    
Sbjct: 213 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLA 272

Query: 356 ----SMYRKYGIIPDAKHYTCVV---DMLGRTGRLD-----EAYKLAKSI-QVDPDGGPL 402
                MY K G I DAK     +   D +  T  LD     E Y+ A+ +    P    +
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY---ALAGEWENVHSLRS 459
            W  L+SA   +G+ + A+   ++L +  + +    +TL +T    A  G  E    + S
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHEL-QLQKNIKLNQITLVSTLSACAQVGALELGRWIHS 391

Query: 460 EMKRTGI 466
            +K+ GI
Sbjct: 392 YIKKNGI 398


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 341/559 (61%), Gaps = 7/559 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNH-LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           ++H   +K+ F     TLN+ L++ Y +      A Q+F+ M E +VVS+TS++AGY   
Sbjct: 272 ALHGYAIKASF-GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYARE 330

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G   +++ LF +M    + P+ FT  T++ AC+    L  GK +H +I+    Q +L V 
Sbjct: 331 GLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVS 390

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+DMY KC  +  A  VF  M  +++VSW ++I  +++N+  +EAL +F E  Y S+ 
Sbjct: 391 NALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK- 449

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN   +A ++ ACASL  L  G+  HG ++R+G   +  VA+ALVDMY KCG++  +  
Sbjct: 450 -PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARL 508

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ I    +V++T MI G   +G G  ++  FNEM + GI+P++V+F+ +L+ACSHSGL
Sbjct: 509 LFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGL 568

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +DEG    + M     I P ++HY C+VD+L R G L +AYK  K + ++PD    +WG 
Sbjct: 569 LDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDA--TIWGA 626

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL   R++  V +A + +  + E   +    YV L+N YA A +WE V  LR  + R G+
Sbjct: 627 LLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGL 686

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGCSW+EI+ + + F  G++     +++  LL++   +MKE G+   K     +  +
Sbjct: 687 RKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHF-PKMRYALIKAD 745

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D  +E  +  HSE++A+AFG++S+P G T+R+ KNLR+C DCH++ K +S +V+RD ++R
Sbjct: 746 DTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILR 805

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++GSCSC   W
Sbjct: 806 DSNRFHHFKDGSCSCRGHW 824



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 192/356 (53%), Gaps = 6/356 (1%)

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
           +++ + AR+LFDE+ + +V+S+ S+++GY++ G  +  L LF++ML   +  +  T  +V
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
           +  CS    L+ G+ +H +     F   L + + L+DMY K  +++ A +VF+ MG R+V
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 317

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSWTS+I  +A+      ++ +F E   +    P+   + ++++ACA  G L +GK  H 
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEKEGIS-PDIFTITTILHACACTGLLENGKDVHN 376

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            +  +  + +  V++AL+DMYAKCGS+  +  VF+ +    +V++ +MI G +K  L   
Sbjct: 377 YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE 436

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +L+LF EM     KPN +T   +L AC+    ++ G Q +     + G   D      +V
Sbjct: 437 ALNLFVEM-QYNSKPNSITMACILPACASLAALERG-QEIHGHILRNGFSLDRHVANALV 494

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           DM  + G L  A  L   I   P+   + W  +++   +HG    A+ A N++  S
Sbjct: 495 DMYLKCGALGLARLLFDMI---PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 168/362 (46%), Gaps = 57/362 (15%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL- 188
           T+ +V++ C+ L  +  G++IH+ I++   + + V+ S LV MY  C D+   RR+FD  
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 189 ------------------------------------------------MGCRNVVSWTSI 200
                                                           +G R+V+SW S+
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  +  N    + L++F +      +     M+ SV+  C++ G L+ G+  HG  +++ 
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV-SVVAGCSNTGMLLLGRALHGYAIKAS 281

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
                 + + L+DMY+K G++N + +VF  +   SVV++TSMI G A+ GL   S+ LF+
Sbjct: 282 FGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH 341

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EM   GI P+  T   +LHAC+ +GL++ G + + +  ++  +  D      ++DM  + 
Sbjct: 342 EMEKEGISPDIFTITTILHACACTGLLENG-KDVHNYIKENKMQSDLFVSNALMDMYAKC 400

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G + +A+ +   +QV      + W T++     + +  +  EA N  +E         +T
Sbjct: 401 GSMGDAHSVFSEMQVK---DIVSWNTMIGG---YSKNSLPNEALNLFVEMQYNSKPNSIT 454

Query: 441 LS 442
           ++
Sbjct: 455 MA 456



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 140/360 (38%), Gaps = 101/360 (28%)

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           SV+  CA L  +  G+  H ++  +  E + V+ S LV MY  CG +    ++F++++N 
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 295 S-------------------------------------------------VVTYTSMIVG 305
                                                             V+++ SMI G
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
               GL    LDLF +M+  GI  +  T V V+  CS++G++  G + L     K     
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLG-RALHGYAIKASFGK 284

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
           +     C++DM  ++G L+ A ++ +++    +   + W ++++     G  D++V   +
Sbjct: 285 ELTLNNCLLDMYSKSGNLNSAIQVFETMG---ERSVVSWTSMIAGYAREGLSDMSVRLFH 341

Query: 426 QL----------------------------------IESNQQVANAYVT--LSNTYALAG 449
           ++                                  I+ N+  ++ +V+  L + YA  G
Sbjct: 342 EMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG 401

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
              + HS+ SEM+   I      SW    +     Y+ N+L    +E L+L  E++   K
Sbjct: 402 SMGDAHSVFSEMQVKDI-----VSW----NTMIGGYSKNSL---PNEALNLFVEMQYNSK 449


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 335/564 (59%), Gaps = 4/564 (0%)

Query: 42   HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
            +L  +  VH +    G L N    N L+  Y   +    A  LFD M   + VS++ ++ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 102  GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            G+  +G        F++++     P+ +T   VI+AC  L +L  G+ IH  +  FG   
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 162  NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
            +  VC++LVDMYGKC +++ AR +FD M  R++V+WT +I  +A+    +E+L +F +  
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 222  YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             +    P++  + +V+ ACA LG +   +     + R   + + ++ +A++DM+AKCG V
Sbjct: 930  EEGV-VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 988

Query: 282  NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
              + ++F+R+   +V+++++MI     +G GR +LDLF  M+  GI PN +T V +L+AC
Sbjct: 989  ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 1048

Query: 342  SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
            SH+GLV+EG++    M+  Y +  D KHYTCVVD+LGR GRLDEA KL  S+  + D G 
Sbjct: 1049 SHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEG- 1107

Query: 402  LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
             LWG  L A R H  V +A +A+  L+E   Q    Y+ LSN YA AG WE+V  +R  M
Sbjct: 1108 -LWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLM 1166

Query: 462  KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
             +  + K PG +W+E+ ++++ F  G+    R  E+  +L+ L  K++  GYV   T  V
Sbjct: 1167 SQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV-PDTNFV 1225

Query: 522  FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
              DV++E +  I+  HSE+LA+AFGLI+ P+   IRI+KNLR+C DCH   KL+S I  R
Sbjct: 1226 LHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGR 1285

Query: 582  DFVVRDVNRFHHFRNGSCSCGDFW 605
              +VRD NRFHHF+ G+CSCGD+W
Sbjct: 1286 VIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 324/557 (58%), Gaps = 14/557 (2%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQE---------CKHLISLASVHSEILKSGFLSNTFTLN 66
           +SL   N+     +K HF+Q+L           C++L  +  VH++    G L N    N
Sbjct: 40  TSLNLHNREEE-SSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVAN 98

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            LI  Y   +    A  LFD M   + VS++ ++ G+  +G        F++++     P
Sbjct: 99  KLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARP 158

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + +T   VI+AC  L +L  G+ IH  +  FG   +  VC++LVDMY KC +++ AR +F
Sbjct: 159 DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLF 218

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  R++V+WT +I  +A+  + +E+L +F +   +    P++  + +V+ ACA LG +
Sbjct: 219 DKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV-VPDKVAMVTVVFACAKLGAM 277

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
              ++    + R   + + ++ +A++DMYAKCG V  + ++F+R+   +V+++++MI   
Sbjct: 278 HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY 337

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +G GR +LDLF  M+S G+ P+ +T   +L+ACSH+GLV+EG++   SM+  Y +  D
Sbjct: 338 GYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTD 397

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            KHYTCVVD+LGR GRLDEA KL KS+ ++ D G  LWG  L A R H  V +A +A+  
Sbjct: 398 VKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEG--LWGAFLGACRTHKDVVLAEKAATS 455

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           L+E   Q    YV LSN YA AG WE+V  +R  M +  + K PG +W+E+ ++++ F  
Sbjct: 456 LLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSV 515

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+    R  E+  +L+ L  K++  GYV   T  V  DV++E +  I+  HSE+LA+AFG
Sbjct: 516 GDTTHPRSKEIYEMLKSLSNKLELVGYV-PDTNFVLHDVDEELKIGILYTHSEKLAIAFG 574

Query: 547 LISIPKGITIRIMKNLR 563
           LI+ P+   IRI+KNLR
Sbjct: 575 LIATPEHTPIRIIKNLR 591



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 129/232 (55%), Gaps = 1/232 (0%)

Query: 18   LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
            L R   R   +T    I+  ++ K+L     +H  + K G   + F    L++ Y + ++
Sbjct: 827  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 78   TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
             + AR LFD+M E ++V++T ++ GY   G    +L+LF KM    V P++    TV+ A
Sbjct: 887  IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946

Query: 138  CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            C+ L  +   + I  +I+   FQ ++++ ++++DM+ KC  V+ AR +FD M  +NV+SW
Sbjct: 947  CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW 1006

Query: 198  TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
            +++I A+  + QG +AL++F     +S   PN+  L S++ AC+  G +  G
Sbjct: 1007 SAMIAAYGYHGQGRKALDLF-PMMLRSGILPNKITLVSLLYACSHAGLVEEG 1057


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 350/576 (60%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L+ C     L    ++H +++KSG   ++   N L+N Y +      A ++F E+ 
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E +VVS+T+L+ G++  G     L +F +ML     PN +TF +++++CS L+D+  GKQ
Sbjct: 254 ERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 312

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  I       N  V ++LVDMY K   ++ A  +F+ +  R++ +WT I+  +AQ+ Q
Sbjct: 313 VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ 372

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G +A++ F +   +   +PN+  LAS ++ C+ +  L SG+  H + +++G   +  VAS
Sbjct: 373 GEKAVKCFIQMQREGV-KPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVAS 431

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDMYAKCG V  ++ VF+ + +   V++ ++I G +++G G  +L  F  M+  G  P
Sbjct: 432 ALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVP 491

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ++VTF+GVL ACSH GL++EG +H +S+ + YGI P  +HY C+VD+LGR G+  E    
Sbjct: 492 DEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESF 551

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + +++  +   L+W T+L A ++HG ++    A+ +L E   ++ + Y+ LSN +A  G
Sbjct: 552 IEEMKLTSN--VLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 609

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W++V ++R+ M   G+ KEPGCSWVE+  Q + F + +    +  E+   L++L +K+ 
Sbjct: 610 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLM 669

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GY    T  V  +V D  ++E++  HSERLALAF L+S     TIRI KNLR+C DCH
Sbjct: 670 SVGYT-PNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCH 728

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K IS+I  ++ VVRD+N FHHF+NGSCSC +FW
Sbjct: 729 DFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 173/334 (51%), Gaps = 3/334 (0%)

Query: 53  ILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           ++K+G   ++   + L+N YV+ +  Q ARQ+ +EM   +V  +   ++   +    Q A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
           + LF  M    +  N+F FA++I A + L D   G+ IH  +  +GF+ ++++ ++ V M
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y K   V+   + F  M   N+ S  +++          +   +  +   +  + PN + 
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE-PNMYT 193

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
             S++  CAS G L  GK  HG V++SG   +  + ++LV++YAKCGS NY+ KVF  I 
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
              VV++T++I G    G G   L +FN+M++ G  PN  TF+ +L +CS    VD G Q
Sbjct: 254 ERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 312

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            + +   K  +  +    T +VDM  +   L++A
Sbjct: 313 -VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDA 345


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/598 (39%), Positives = 346/598 (57%), Gaps = 12/598 (2%)

Query: 15  ASSLTRQNK----RSSCHTKAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNH 67
           A+ L  Q+K     SS     ++   L+ C   K L     +H+ + + G   N      
Sbjct: 39  ATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATK 98

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L+N Y      + A  LFD++ + N+  +  L+  Y   G  + A+ L+ +ML   + P+
Sbjct: 99  LVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPD 158

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
            FT   V+KACS L+ +  G+ IH  +   G++ ++ V ++LVDMY KC  V  AR VFD
Sbjct: 159 NFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFD 218

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  R+ V W S++ A+AQN    E+L +  E   +   RP +  L +VI++ A +  L 
Sbjct: 219 KIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGV-RPTEATLVTVISSSADIACLP 277

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G+  HG   R G ++ND V +AL+DMYAKCGSV  +  +F R+    VV++ ++I G A
Sbjct: 278 HGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYA 337

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +GL   +LDLF  M+    +P+ +TFVG L ACS   L+DEG    + M R   I P  
Sbjct: 338 MHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTV 396

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HYTC+VD+LG  G+LDEAY L + + V PD G  +WG LL++ + HG V++A  A  +L
Sbjct: 397 EHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSG--VWGALLNSCKTHGNVELAEVALEKL 454

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           IE     +  YV L+N YA +G+WE V  LR  M   GI K   CSW+E++++ YAF +G
Sbjct: 455 IELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSG 514

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +        + + L+ LE  M+E GYV   TG VF DVE++ + ++V  HSERLA+AFGL
Sbjct: 515 DVSHPNSGAIYAELKRLEGLMREAGYVP-DTGSVFHDVEEDEKTDMVCSHSERLAIAFGL 573

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS   G  + I KNLR+C DCH   K IS I ER+  VRDVNR+HHFR+G CSCGD+W
Sbjct: 574 ISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 341/609 (55%), Gaps = 33/609 (5%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +T    I+   E   L    S+H   +KS   S+ F  N LI+CY        A ++F  
Sbjct: 132 YTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 191

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           + E +VVS+ S++ G++  G P  AL LF+KM    V  +  T   V+ AC+ + +L  G
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL------------------- 188
           +Q+ ++IE      NL + ++++DMY KC  ++ A+R+FD                    
Sbjct: 252 RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 311

Query: 189 ------------MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                       M  +++V+W ++I A+ QN + +EAL +F E   Q   + NQ  L S 
Sbjct: 312 EDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVST 371

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           ++ACA +G L  G+  H  + + G   N  V SAL+ MY+KCG +  S +VFN +    V
Sbjct: 372 LSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDV 431

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
             +++MI G A +G G  ++D+F +M    +KPN VTF  V  ACSH+GLVDE       
Sbjct: 432 FVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQ 491

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M   YGI+P+ KHY C+VD+LGR+G L++A K  +++ + P     +WG LL A ++H  
Sbjct: 492 MESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS--VWGALLGACKIHAN 549

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           +++A  A  +L+E   +   A+V LSN YA  G+WENV  LR  M+ TG+ KEPGCS +E
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           I    + F +G+       +V   L E+  K+K  GY    + ++ +  E+E +E+ + L
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+ +GLIS      IR++KNLR+C DCH V KLIS + +R+ +VRD  RFHHFRN
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729

Query: 597 GSCSCGDFW 605
           G CSC DFW
Sbjct: 730 GQCSCNDFW 738



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 228/465 (49%), Gaps = 44/465 (9%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHL--INCYVR 74
           + +  N+ ++ + ++  I  ++ C  L  L   H  ++++G  S+ ++ + L  +     
Sbjct: 17  NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFAT 133
               + AR++FDE+ +PN  ++ +L+  Y +   P +++  F  M+  +  +PN++TF  
Sbjct: 77  FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           +IKA + ++ L  G+ +H          ++ V +SL+  Y  C D+D A +VF  +  ++
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-LASVINACASLGRLVSGKVA 252
           VVSW S+I    Q     +ALE+F++   +S D    H+ +  V++ACA +  L  G+  
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKM--ESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA----- 307
              +  +    N  +A+A++DMY KCGS+  + ++F+ +     VT+T+M+ G A     
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314

Query: 308 --------------------------KYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHA 340
                                     + G    +L +F+E+ + + +K N +T V  L A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+  G ++ G + + S  +K+GI  +    + ++ M  + G L+++ ++  S++      
Sbjct: 375 CAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE---KRD 430

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
             +W  ++    +HG  + AV+   ++ E+N  V    VT +N +
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN--VKPNGVTFTNVF 473


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 341/623 (54%), Gaps = 36/623 (5%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           A  +  Q  + S    +  IQ   + + L     VH  I  SGF+   F LN L+  Y +
Sbjct: 58  ALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAK 117

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--GNLVW------- 125
                 +++LFDEM E ++ S+  L++GY  MG  Q A  LF KM    N  W       
Sbjct: 118 CDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGY 177

Query: 126 -----PNE------------------FTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
                PNE                  FT ++ + A + +  L  GK+IH +I   G   +
Sbjct: 178 VRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSD 237

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            VV S+L DMYGKC  ++ AR +FD M  R++V+WT++I  + Q+ +  E  ++F +   
Sbjct: 238 EVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADL-L 296

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +S  RPN+   + V+NACA+      GK  HG + R G +     ASALV MY+KCG++ 
Sbjct: 297 RSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMV 356

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +++VF     P + ++TS+I G A+ G    ++  F  ++  G +P+ +TFVGVL AC+
Sbjct: 357 SAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACA 416

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLVD+G+ +  S+  +YG+   A HY C++D+L R+G+ DEA  +   + + PD    
Sbjct: 417 HAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK--F 474

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           LW +LL   R+HG + +A  A+  L E   +    YVTL+N YA AG W  V  +R  M 
Sbjct: 475 LWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMD 534

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             G+ K+PG SW+ I+   + F  G+    +  E+   L +L ++MKE G+V   T  V 
Sbjct: 535 DRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFV-PDTNFVL 593

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            DVEDE +E+ +  HSE+LA+AFG+IS P+G  I++ KNLR C DCH   K IS I  R 
Sbjct: 594 HDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRK 653

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD NRFH F +G CSC D+W
Sbjct: 654 IIVRDSNRFHFFEDGHCSCRDYW 676


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 341/576 (59%), Gaps = 9/576 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           + + L +C +L  L    ++H+ I  S F  +   LN ++N Y +    + A+ LFD+M 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             ++VS+T L++GY   GQ   AL LF KML     PNEFT ++++KA         G+Q
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H     +G+  N+ V SSL+DMY +   +  A+ +F+ +  +NVVSW ++I  HA+  +
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G   + +F +   Q  + P     +SV+ ACAS G L  GK  H  V++SG +    + +
Sbjct: 288 GEHVMRLFXQMLRQGFE-PTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGN 345

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L+DMYAK GS+  + KVF R+    +V++ S+I G A++GLG  +L LF +M+   ++P
Sbjct: 346 TLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQP 405

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++TF+ VL ACSHSGL+DEG Q+   + +K+ I     H+  VVD+LGR GRL+EA K 
Sbjct: 406 NEITFLSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKF 464

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + + + P     +WG LL A R+H  +D+ V A+ Q+ E +   +  +V LSN YA AG
Sbjct: 465 IEEMPIKPTAA--VWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAG 522

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
              +   +R  MK +G+ KEP CSWVEI ++ + F A +       E+  +  ++  K+K
Sbjct: 523 RLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIK 582

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GYV   + ++F  +  + RE  +  HSE+LALAF ++  P G+TIRI KN+R+C DCH
Sbjct: 583 EIGYVPDTSHVLFF-MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCH 641

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             FK  S ++ R+ +VRD NRFHHF +G CSC D+W
Sbjct: 642 SAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 172/308 (55%), Gaps = 6/308 (1%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    ++ ++  C+ L  L  G+ IH HI++  F+ +LV+ + +++MY KC  ++ A+ +
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  +++VSWT +I  ++Q+ Q  EAL +F +  +    +PN+  L+S++ A  +   
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF-QPNEFTLSSLLKASGTGPS 221

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  H   ++ G + N  V S+L+DMYA+   +  +  +FN ++  +VV++ ++I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G G   + LF +M+ +G +P   T+  VL AC+ SG +++G + + +   K G  P
Sbjct: 282 HARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG-KWVHAHVIKSGGQP 339

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A     ++DM  ++G + +A K+ + + V  D   + W +++S    HG    A++   
Sbjct: 340 IAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQD--IVSWNSIISGYAQHGLGAEALQLFE 396

Query: 426 QLIESNQQ 433
           Q++++  Q
Sbjct: 397 QMLKAKVQ 404


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 342/573 (59%), Gaps = 4/573 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L  C++L  +  VH++I  +G   N    N L+  YV     + A++LFD M + +
Sbjct: 56  FRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRH 115

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
             S++ ++ GY  +G       +F+++L +    ++++   VI+AC  L DL  G+ IH 
Sbjct: 116 PYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHC 175

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                G  Y   VC++LVDMY +C  V+ A ++F  M  R++ +WT +I A A++    E
Sbjct: 176 ITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVE 235

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           +L  F     Q    P++  L +V+ ACA LG +   K  H  +  +G   + ++ +A++
Sbjct: 236 SLVFFDRMRNQG-IVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMI 294

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAKCGSV  +  +F+R+   +V+T+++MI     +G G  +L+LF  M+  GI PN +
Sbjct: 295 DMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRI 354

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFV +L+ACSH+GL++EG +   SM+ +YG+ PD KHYTC+VD+LGR GRLDEA ++ + 
Sbjct: 355 TFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEG 414

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + V+ D   +LWG LL A R+H  +D+A   +  L++   Q    YV LSN YA AG+WE
Sbjct: 415 MPVEKD--EVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWE 472

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
           ++   R  M + G+ K PG +W+E+ ++ Y F  G+    R +E+  +L+ L  K++  G
Sbjct: 473 DMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAG 532

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y    T  V  DV++E ++ ++  HSE+LA+AFGL+ +P+G  IRI KNLR+C DCH   
Sbjct: 533 Y-HPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFC 591

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +S I ++  +VRD  RFHHF+ G CSC D+W
Sbjct: 592 KFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 357/612 (58%), Gaps = 24/612 (3%)

Query: 9   LIFTLAASSLTRQN----KRSSCHTKA-----------HFIQQLQECKHLISLASVHSEI 53
           L  TL A+ L  +     KR   HTKA             I    +C  L+    +  EI
Sbjct: 65  LYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEI 124

Query: 54  LKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
            +    S     N +I+ Y  + + + AR+LFDEM   +  S+ ++++GY++ G    AL
Sbjct: 125 PQKDLCS----WNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEAL 180

Query: 114 LLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
            LF+ M  N     N FT ++ + A + ++ L  GK+IH ++   G + + VV ++L+D+
Sbjct: 181 DLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDL 240

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           YGKC  ++ AR +FD M  +++VSWT++I    ++ +  E   +FR+    S  RPN++ 
Sbjct: 241 YGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDL-MGSGVRPNEYT 299

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
            A V+NACA L     GK  HG + R G +     ASALV +Y+KCG+   + +VFN++ 
Sbjct: 300 FAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP 359

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
            P +V++TS+IVG A+ G    +L  F  ++  G KP+++TFVGVL AC+H+GLVD G++
Sbjct: 360 RPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLE 419

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           +  S+  K+G++  A HY CV+D+L R+GR  EA  +  ++ + PD    LW +LL   R
Sbjct: 420 YFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPD--KFLWASLLGGCR 477

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG +++A  A+  L E   +    Y+TLSN YA AG W     +R++M   GI K+PG 
Sbjct: 478 IHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGK 537

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           SW+EI+ Q + F  G+    + S++   L EL +KMKE GYV   T  V  DVE+E +E+
Sbjct: 538 SWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYV-ADTNFVLHDVEEEQKEQ 596

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            +  HSE+LA+AFG+IS   G  I++ KNLR C DCH+  K IS IV+R  +VRD NRFH
Sbjct: 597 NIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFH 656

Query: 593 HFRNGSCSCGDF 604
            F +GSCSC D+
Sbjct: 657 CFVDGSCSCKDY 668



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 164/339 (48%), Gaps = 35/339 (10%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND------- 178
           P+   ++T+I AC     L  GK++H H +   F   +V+ + L+ MY KC         
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 179 ------------------------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
                                   ++ AR++FD M  R+  SW ++I  +       EAL
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEAL 180

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           ++FR          N   L+S + A A++  L  GK  HG ++RSG E ++VV +AL+D+
Sbjct: 181 DLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDL 240

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCGS+N +  +F+++++  +V++T+MI    + G  +    LF +++  G++PN+ TF
Sbjct: 241 YGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTF 300

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            GVL+AC+       G +    M R  G  P +   + +V +  + G  + A ++   + 
Sbjct: 301 AGVLNACADLAAEQMGKEVHGYMTR-VGYDPFSFAASALVHVYSKCGNTETARRVFNQM- 358

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
             P    + W +L+     +G+ D+A++    L+ S  +
Sbjct: 359 --PRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK 395



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 204 HAQNAQGHEALEMFREFN-------YQSR-DRPNQHMLASVINACASLGRLVSGKVAHGV 255
           H+++ +  E +E+F + N       Y  R  +P+  + +++I AC    +L  GK  H  
Sbjct: 29  HSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAH 88

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
              S      V+++ L+ MYAKCGS+  +  +F+ I    + ++ +MI G A  G    +
Sbjct: 89  TKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQA 148

Query: 316 LDLFNEMISR 325
             LF+EM  R
Sbjct: 149 RKLFDEMPHR 158


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/557 (40%), Positives = 338/557 (60%), Gaps = 9/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I  +G+   TF  N LIN YV+    + A+ LFD+M E NVVS+T++++ Y N   
Sbjct: 307 VHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQL 366

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ L   M  + V PN FTF++V++AC  L DL   KQ+H+ I   G + ++ V S+
Sbjct: 367 NDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSA 423

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y K  ++  A +VF  M   + V W SII A AQ++ G EAL +++          
Sbjct: 424 LIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP-A 482

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q  L SV+ AC SL  L  G+ AH  V++   +   ++ +AL+DMY KCGS+  +  +F
Sbjct: 483 DQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDL--ILNNALLDMYCKCGSLEDAKFIF 540

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           NR++   V+++++MI G A+ G    +L+LF  M  +G KPN +T +GVL ACSH+GLV+
Sbjct: 541 NRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVN 600

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG  +  SM   YGI P  +HY C++D+LGR  +LD+  KL   +  +PD   + W TLL
Sbjct: 601 EGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPD--VVTWRTLL 658

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R    VD+A  A+ ++++ + Q   AYV LSN YA++  W +V  +R  MK+ GI K
Sbjct: 659 DACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRK 718

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPGCSW+E+  Q +AF  G+    +  E+   L +   ++   GYV   T  V  D+E E
Sbjct: 719 EPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYV-PDTNFVLQDLEGE 777

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            RE+ +  HSE+LA+ FG++S PK  TIRI KNL++C DCH   KLI+++ +R  V+RD 
Sbjct: 778 QREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDP 837

Query: 589 NRFHHFRNGSCSCGDFW 605
            R+HHF++G CSCGD+W
Sbjct: 838 IRYHHFQDGVCSCGDYW 854



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 9/264 (3%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           VW +  T++ +IK C     +  GK++H HI + G+     + + L++MY K N ++ A+
Sbjct: 281 VWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQ 340

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            +FD M  RNVVSWT++I A++ NAQ ++       F ++    PN    +SV+ AC   
Sbjct: 341 VLFDKMPERNVVSWTTMISAYS-NAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACE-- 397

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
            RL   K  H  +++ G E +  V SAL+D+Y+K G +  + KVF  +     V + S+I
Sbjct: 398 -RLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSII 456

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG 362
              A++  G  +L L+  M   G   +  T   VL AC+   L++ G Q H+  +     
Sbjct: 457 AAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQD 516

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEA 386
           +I +      ++DM  + G L++A
Sbjct: 517 LILN----NALLDMYCKCGSLEDA 536



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 118/217 (54%), Gaps = 3/217 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C+ L  L  +HS I+K G  S+ F  + LI+ Y ++ +   A ++F EM+  +
Sbjct: 389 FSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGD 448

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            V + S++A +        AL L++ M       ++ T  +V++AC+ L+ L  G+Q H 
Sbjct: 449 SVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHV 508

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+    F  +L++ ++L+DMY KC  ++ A+ +F+ M  ++V+SW+++I   AQN    E
Sbjct: 509 HV--LKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSME 566

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           AL +F     Q   +PN   +  V+ AC+  G +  G
Sbjct: 567 ALNLFESMKVQG-PKPNHITILGVLFACSHAGLVNEG 602


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 337/559 (60%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L   +    LI  YV+    + AR +FD M E NVVS+T++++ Y   G 
Sbjct: 80  VHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGY 139

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +ML +   PNEFTFATV+ +C   +  + G+QIH+HI    ++ ++ V SS
Sbjct: 140 ASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSS 199

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +  AR +F  +  R+VVS T+II  +AQ     EALE+FR    +   + 
Sbjct: 200 LLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGM-QS 258

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     SV+ A + L  L  GK  H  ++RS      V+ ++L+DMY+KCG++ Y+ ++F
Sbjct: 259 NYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIF 318

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
           + +   +V+++ +M+VG +K+G GR  L+LFN MI    +KP+ VT + VL  CSH GL 
Sbjct: 319 DTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLE 378

Query: 348 DEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D+G+    D    K  + PD+KHY CVVDMLGR GR++ A++  K +  +P     +WG 
Sbjct: 379 DKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAA--IWGC 436

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A  +H  +DI     +QL++   + A  YV LSN YA AG WE+V SLR+ M +  +
Sbjct: 437 LLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAV 496

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW+E+    + F+A +    R  EV + ++EL  + KE GYV      V  DV+
Sbjct: 497 TKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYV-PDLSCVLHDVD 555

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+I+  HSE+LAL FGLI+ P+ + IR++KNLR+C DCH+  K  S I  R+  +R
Sbjct: 556 EEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLR 615

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH    G CSCGD+W
Sbjct: 616 DKNRFHRIVGGKCSCGDYW 634



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 160/316 (50%), Gaps = 13/316 (4%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + TV+  C     +  G+++H H+    +   + + + L+  Y KC+ +  AR VFD+M 
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT++I A++Q     +AL +F +   +S   PN+   A+V+ +C      V G+
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQM-LRSGTEPNEFTFATVLTSCIGSSGFVLGR 179

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  +++   E +  V S+L+DMYAK G ++ +  +F  +    VV+ T++I G A+ G
Sbjct: 180 QIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLG 239

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR----KYGIIPD 366
           L   +L+LF  +   G++ N VT+  VL A S    +D G Q  + + R     Y ++ +
Sbjct: 240 LDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQN 299

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
           +     ++DM  + G L  A ++  ++    +   + W  +L     HG     +E  N 
Sbjct: 300 S-----LIDMYSKCGNLTYARRIFDTLH---ERTVISWNAMLVGYSKHGEGREVLELFNL 351

Query: 427 LIESNQQVANAYVTLS 442
           +I+ N+   ++   L+
Sbjct: 352 MIDENKVKPDSVTVLA 367



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L R+  +S+  T    +  L     L     VH+ +L+S   S     N LI+ Y +   
Sbjct: 251 LQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGN 310

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIK 136
              AR++FD + E  V+S+ +++ GY   G+ +  L LF  M+  N V P+  T   V+ 
Sbjct: 311 LTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLS 370

Query: 137 ACS----------MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            CS          +  D+ +GK     ++     Y  V     VDM G+   V+ A
Sbjct: 371 GCSHGGLEDKGMDIFYDMTSGK---ISVQPDSKHYGCV-----VDMLGRAGRVEAA 418


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/568 (37%), Positives = 352/568 (61%), Gaps = 9/568 (1%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRL---KKTQVARQLFDEMLEPNVVSYTS 98
           L+SL    H  ++KSG   +      L++ Y +         AR++FD M   NV+S+T+
Sbjct: 160 LLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTA 219

Query: 99  LMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           ++ GY+  G   + A+ LF +M+   V PN FTF++V+KAC+ L+D+  G+Q++  +   
Sbjct: 220 IITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
                  V +SL+ MY +C +++ AR+ FD++  +N+VS+ +I+ A+A++    EA E+F
Sbjct: 280 RLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELF 339

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
            E    +    N    AS+++  +S+G +  G+  H  +++SG + N  + +AL+ MY++
Sbjct: 340 NEIE-GAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSR 398

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG++  + +VFN + + +V+++TSMI G AK+G    +L+ F++M+  G+ PN+VT++ V
Sbjct: 399 CGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAV 458

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L ACSH GL+ EG++H  SM  ++GI+P  +HY CVVD+LGR+G L+EA +L  S+    
Sbjct: 459 LSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKA 518

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           D   L+  T L A R+HG +D+   A+  ++E +     AY+ LSN +A AG+WE V  +
Sbjct: 519 DA--LVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEI 576

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R +MK   + KE GCSW+E+ ++ + FY G+    +  E+   L +L  K+KE GY+   
Sbjct: 577 RKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYI-PS 635

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           T  V  DVE+E +E+ +  HSE++A+A+G IS      IR+ KNLR+C DCH  FK  S 
Sbjct: 636 TDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSI 695

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  ++ V+RD NRFHHF++G+CSC D+W
Sbjct: 696 VRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 204/384 (53%), Gaps = 11/384 (2%)

Query: 53  ILKSGFLSNTFTLN-HLINCYVRLK-KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
           +LK+G+  +   +   LI+ +V+     + A ++FD M + NVV++T ++  +  +G  +
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
            A+ LF  M+ +   P+ FT + V+ AC+ +  L  G+Q H  +   G   ++ V  SLV
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 171 DMYGKC---NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-GHEALEMFREFNYQSRD 226
           DMY KC     VD AR+VFD M   NV+SWT+II  + Q+     EA+E+F E   Q + 
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM-VQGQV 246

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +PN    +SV+ ACA+L  +  G+  + +VV+      + V ++L+ MY++CG++  + K
Sbjct: 247 KPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARK 306

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            F+ +   ++V+Y +++   AK      + +LFNE+   G   N  TF  +L   S  G 
Sbjct: 307 AFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGA 366

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           + +G + + S   K G   +      ++ M  R G ++ A+++   +    DG  + W +
Sbjct: 367 IGKG-EQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM---GDGNVISWTS 422

Query: 407 LLSASRLHGRVDIAVEASNQLIES 430
           +++    HG    A+E  ++++E+
Sbjct: 423 MITGFAKHGFATRALETFHKMLEA 446



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 213/411 (51%), Gaps = 45/411 (10%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           ++VS+++L++ Y N  +   A+  F  ML    +PNE+ F  V +ACS   ++  GK I 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 152 THIETFG-FQYNLVVCSSLVDMYGKCN-DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
             +   G F+ ++ V  +L+DM+ K N D++ A +VFD M  RNVV+WT +I    Q   
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A+++F +    S   P++  L+ V++ACA +G L  G+  H +V++SG + +  V  
Sbjct: 126 SRDAVDLFLDM-VLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 270 ALVDMYAKC---GSVNYSDKVFNRISNPSVVTYTSMIVGAAKY-GLGRFSLDLFNEMISR 325
           +LVDMYAKC   GSV+ + KVF+R+   +V+++T++I G  +  G  R +++LF EM+  
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQ------------------HLDSMYRKYGIIPDA 367
            +KPN  TF  VL AC++   +  G Q                   L SMY + G + +A
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA 304

Query: 368 KH------------YTCVVDMLGRTGRLDEAYKLAKSIQVDPDG-GPLLWGTLLSASRLH 414
           +             Y  +V+   ++   +EA++L   I+    G     + +LLS +   
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 415 GRVDIAVEASNQLI----ESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           G +    +  ++++    +SN  + NA +++   Y+  G  E    + +EM
Sbjct: 365 GAIGKGEQIHSRILKSGFKSNLHICNALISM---YSRCGNIEAAFQVFNEM 412



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 19/288 (6%)

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R++VSW+++I  +A N +  EA+  F +   +    PN++    V  AC++   +  GK+
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDM-LECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 252 AHGVVVRSGCEFNDV-VASALVDMYAKC-GSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
             G ++++G   +DV V  AL+DM+ K  G +  + KVF+R+ + +VVT+T MI    + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G  R ++DLF +M+  G  P+  T  GV+ AC+  GL+  G Q    +  K G+  D   
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCV 182

Query: 370 YTCVVDMLGRT---GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
              +VDM  +    G +D+A K+   +   P    + W  +++     G  D   EA   
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRM---PVHNVMSWTAIITGYVQSGGCD--REAIEL 237

Query: 427 LIESNQ-QVANAYVTLSNTYA----LAGEW--ENVHSLRSEMKRTGIH 467
            +E  Q QV   + T S+       L+  W  E V++L  +M+   I+
Sbjct: 238 FLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASIN 285


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/547 (40%), Positives = 328/547 (59%), Gaps = 8/547 (1%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM- 119
           N  + N LIN Y R      AR++FDEM E NV ++ +++AG I     +  L LF +M 
Sbjct: 117 NIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMN 176

Query: 120 -LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
            LG L  P+EF   +V++ C+ L  L+ G+Q+H ++   GF++NLVV SSL  MY KC  
Sbjct: 177 ELGFL--PDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +    R+   M  +NVV+W ++I   AQN    E L+ +         RP++    SVI+
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGF-RPDKITFVSVIS 293

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           +C+ L  L  G+  H  V+++G      V S+L+ MY++CG + YS KVF    N  VV 
Sbjct: 294 SCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVC 353

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           ++SMI     +G G  ++DLFN+M    ++ NDVTF+ +L+ACSH GL ++GI+  D M 
Sbjct: 354 WSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMV 413

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            KYG+ P  +HYTC+VD+LGR G ++EA  L +S+ V  D   + W TLLSA ++H + +
Sbjct: 414 EKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKAD--VITWKTLLSACKIHKKTE 471

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A   S ++   + +    YV LSN +A    W++V  +R  M+   + KEPG SW+E++
Sbjct: 472 MARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVK 531

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           +Q + F  G+    +  E+ S LREL  +MK+RGYV      V  D++ E +E  +  HS
Sbjct: 532 NQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYV-PDIDSVLHDMDVEDKEYSLVHHS 590

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AF L+  P G  IR++KNLR+C DCH   K IS+I  R+ +VRD +RFHHF+NG 
Sbjct: 591 EKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGR 650

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 651 CSCGDYW 657



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 181/396 (45%), Gaps = 38/396 (9%)

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           R L       N  S + L A + N+         F +   + +W     F+ ++++C   
Sbjct: 7   RPLTRRHFSTNPSSGSELTAEFTNLCSKGHLKQAFDR-FSSHIWSEPSLFSHLLQSCISE 65

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD--------------------- 180
             L  GKQ+H+ I T G   +  + + L+++Y KC  +D                     
Sbjct: 66  NSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILI 125

Query: 181 ----------GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
                      AR++FD M  RNV +W +++    Q     E L +F   N +    P++
Sbjct: 126 NGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMN-ELGFLPDE 184

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             L SV+  CA L  LV+G+  HG V + G EFN VV S+L  MY KCGS+   +++   
Sbjct: 185 FALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRA 244

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           + + +VV + ++I G A+ G     LD +N M   G +P+ +TFV V+ +CS    + +G
Sbjct: 245 MPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQG 304

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            Q + +   K G        + ++ M  R G L+ + K+    +   +G  + W ++++A
Sbjct: 305 -QQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECE---NGDVVCWSSMIAA 360

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
              HGR   A++  NQ+ E  +  AN    LS  YA
Sbjct: 361 YGFHGRGVEAIDLFNQM-EQEKLEANDVTFLSLLYA 395



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 7/267 (2%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           + L++   VH  + K GF  N   ++ L + Y++        +L   M   NVV++ +L+
Sbjct: 198 RALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLI 257

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
           AG    G P+  L  +  M      P++ TF +VI +CS LA L  G+QIH  +   G  
Sbjct: 258 AGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGAS 317

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN--VVSWTSIIVAHAQNAQGHEALEMFR 218
             + V SSL+ MY +C  ++ + +VF  + C N  VV W+S+I A+  + +G EA+++F 
Sbjct: 318 LIVSVISSLISMYSRCGCLEYSLKVF--LECENGDVVCWSSMIAAYGFHGRGVEAIDLFN 375

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +   Q +   N     S++ AC+  G    G K    +V + G +      + +VD+  +
Sbjct: 376 QME-QEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGR 434

Query: 278 CGSVNYSDKVFNRIS-NPSVVTYTSMI 303
            GSV  ++ +   +     V+T+ +++
Sbjct: 435 YGSVEEAEALIRSMPVKADVITWKTLL 461


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 332/572 (58%), Gaps = 39/572 (6%)

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124
           L+ L   Y  L +   +  LF     P+V  +T+++ G+   G  + AL  + +ML   V
Sbjct: 12  LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV 71

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV----- 179
            PN FTF++++K C     +  GK +H+     GF  +L V + L+D+Y +  DV     
Sbjct: 72  EPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQ 127

Query: 180 --------------------------DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                                     D AR +FD M  R+ V W  +I  + QN   +EA
Sbjct: 128 LFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 187

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L +FR    +++ +PN+  + SV++AC  LG L SG+  H  +  +G +FN  V +ALVD
Sbjct: 188 LVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 246

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KCGS+  +  VF++I +  VV + SMIVG A  G  + +L LF  M   G+ P ++T
Sbjct: 247 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNIT 306

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+G+L AC HSG V EG    + M  +YGI P  +HY C+V++LGR G +++AY+L K++
Sbjct: 307 FIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM 366

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++PD  P+LWGTLL A RLHG++ +  +    L++ N   +  Y+ LSN YA  G W+ 
Sbjct: 367 NIEPD--PVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDG 424

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V  LR+ MK +G+ KEPGCS +E+ ++ + F AG     +  E+  +L E+   +K  GY
Sbjct: 425 VARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGY 484

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
              +T +V  D+ +  +E  + +HSE+LA+AFGLI+   G TI+I+KNLR+C DCH+V K
Sbjct: 485 T-PQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTK 543

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LIS I  R  VVRD NRFHHF NGSCSCGD+W
Sbjct: 544 LISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 1/186 (0%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           +L  ++ CY +  +   AR LFD M E + V +  ++ GY   G P  AL+LF++ML   
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
             PNE T  +V+ AC  L  L +G+ +H++IE  G Q+N+ V ++LVDMY KC  ++ AR
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 258

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            VFD +  ++VV+W S+IV +A      EAL++F+         P       +++AC   
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGL-HPTNITFIGILSACGHS 317

Query: 244 GRLVSG 249
           G +  G
Sbjct: 318 GWVTEG 323



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 8/229 (3%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSG 57
           M    T+N +   A     R  K  +   +   +  L  C  L +L S   VHS I  +G
Sbjct: 174 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 233

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
              N      L++ Y +    + AR +FD++ + +VV++ S++ GY   G  Q AL LF+
Sbjct: 234 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK 293

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKC 176
            M    + P   TF  ++ AC     +  G  I   + + +G +  +     +V++ G+ 
Sbjct: 294 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRA 353

Query: 177 NDVDGARRVFDLMGCR-NVVSWTSIIVA---HAQNAQGHEALEMFREFN 221
             V+ A  +   M    + V W +++ A   H + A G + +E+  + N
Sbjct: 354 GHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 402


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/549 (39%), Positives = 337/549 (61%), Gaps = 21/549 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I  Y +      AR+LF+E+   +V ++T++++G++  G    A  +F++M 
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG--FQYNLVVCSSLVDMYGKCND 178
                 NE ++       +M+A  +  +QI    E F      N    +++V  Y +C +
Sbjct: 305 EK----NEVSWN------AMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGN 354

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP--NQHMLASV 236
           +D A+ +FD M  R+ +SW ++I  +AQ+ Q  EAL +F +     RD    N+  LA  
Sbjct: 355 IDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK---RDGGILNRSALACA 411

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           +++CA +  L  GK  HG +V++G +   +  +AL+ MY KCGS+  +  VF  I+   +
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++ +MI G A++G G+ +L LF E +   IKP+DVT VGVL ACSH+GLVD+G+++ +S
Sbjct: 472 VSWNTMIAGYARHGFGKEALALF-ESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNS 530

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           MY+ YGI  +AKHYTC++D+LGR GRLDEA  L KS+   PD     WG LL ASR+HG 
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAAT--WGALLGASRIHGD 588

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            ++  +A+ ++ E     +  YV LSN YA +G W  V  +RS+M+  G+ K PG SWVE
Sbjct: 589 TELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           I+++T+ F  G+        + + L EL+ ++K+ G+V   T LV  DVE+E +E ++  
Sbjct: 649 IQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSS-TKLVLHDVEEEEKEHMLKY 707

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+AFG++SIP G  IR++KNLR+C DCH+  K IS I +R  +VRD NRFHHF  
Sbjct: 708 HSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSE 767

Query: 597 GSCSCGDFW 605
           GSCSCGD+W
Sbjct: 768 GSCSCGDYW 776



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  + +L     +H  ++K+GF +     N L+  Y +    + A  +F+++ E ++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHT 152
           VS+ +++AGY   G  + AL LF+ M   +  P++ T   V+ ACS    +  G +  ++
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKMTIK-PDDVTLVGVLSACSHTGLVDKGMEYFNS 530

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVA---HAQNA 208
             + +G   N    + ++D+ G+   +D A  +   M    +  +W +++ A   H    
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
            G +A E   E      +  N  M   + N  A+ GR
Sbjct: 591 LGEKAAEKVFEM-----EPDNSGMYVLLSNLYAASGR 622


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/611 (37%), Positives = 352/611 (57%), Gaps = 52/611 (8%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLK------------- 76
           F   L+ C  L+ L    S+H  I++ G   + +T N L+N Y +L+             
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 77  -------------------KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
                                   R++F+ M E ++VS+ +++AG    G  +  L + +
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +M G  + P+ FT ++V+   +   D+  GK+IH      G   ++ V SSL+DMY KC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            V  + RVF L+  R+ +SW SII    QN    E L  FR+    ++ +P  +  +S++
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIM 347

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            ACA L  L  GK  HG + R+G + N  +AS+LVDMYAKCG++  + ++F+R+    +V
Sbjct: 348 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV 407

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++T+MI+G A +G    +++LF +M + GIK        VL ACSH GLVDE  ++ +SM
Sbjct: 408 SWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSM 460

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R +GI P  +HY  V D+LGR GRL+EAY     + + P G   +W TLLSA R+H  +
Sbjct: 461 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGS--IWATLLSACRVHKNI 518

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           D+A + +N+++E +     AY+ L+N Y+ A  W+     R+ M+R GI K P CSW+E+
Sbjct: 519 DMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 578

Query: 478 RDQTYAFYAGN---ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +++ YAF AG+     +E+  E + +L EL   M++ GYV   T  V  DVE+E ++ +V
Sbjct: 579 KNKVYAFMAGDESHPCYEKIREAMEVLVEL---MEKEGYV-PDTSEVHHDVEEEQKKYLV 634

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSERLA+ FG+I+ P G+TIR+ KNLR+C DCH   K IS IV R+ VVRD +RFHHF
Sbjct: 635 CSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHF 694

Query: 595 RNGSCSCGDFW 605
           +NG+CSCGD+W
Sbjct: 695 KNGTCSCGDYW 705



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 182/377 (48%), Gaps = 37/377 (9%)

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           +LF+ +  P  +++ S++  Y + G P  +L  F  ML + ++P+   F +V+K+C++L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV----------------------- 179
           DL  G+ +H +I   G  ++L   ++L++MY K   +                       
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 180 ---------DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
                    D  R++F++M  +++VSW +II  +A+N    E L M RE    +  +P+ 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG-GANLKPDS 239

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             L+SV+   A    +  GK  HG  +R G + +  VAS+L+DMYAKC  V  S +VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           ++    +++ S+I G  + GL    L  F +M+   IKP   +F  ++ AC+H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            Q L     + G   +    + +VDM  + G +  A ++   +++      + W  ++  
Sbjct: 360 KQ-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR---DMVSWTAMIMG 415

Query: 411 SRLHGRVDIAVEASNQL 427
             LHG+   A+E   Q+
Sbjct: 416 CALHGQAPDAIELFEQM 432


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 355/613 (57%), Gaps = 15/613 (2%)

Query: 1   MKKSLTRNLIFTLAASSLTRQN---KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSG 57
           M +SL+RN  F +A   +   N    R S       +    +  ++    ++H+ ++++ 
Sbjct: 166 MIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRN- 224

Query: 58  FLSN-----TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
             SN       T   L++ Y +     +ARQLF+ + +  VVS+T+++AG I   + +  
Sbjct: 225 --SNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEG 282

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
             LF +M    ++PNE T  ++I  C     L  GKQ+H +I   GF  +L + ++LVDM
Sbjct: 283 TKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDM 342

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           YGKC+D+  AR +FD    R+V+ WT+++ A+AQ     +A  +F +    S  RP +  
Sbjct: 343 YGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR-TSGVRPTKVT 401

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           + S+++ CA  G L  GK  H  + +   E + ++ +ALVDMYAKCG +N + ++F    
Sbjct: 402 IVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAI 461

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           +  +  + ++I G A +G G  +LD+F EM  +G+KPND+TF+G+LHACSH+GLV EG +
Sbjct: 462 SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKK 521

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
             + M   +G++P  +HY C+VD+LGR G LDEA+++ KS+ + P+   ++WG L++A R
Sbjct: 522 LFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPN--TIVWGALVAACR 579

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           LH    +   A+ QL+E   +     V +SN YA A  W +   +R  MK  G+ KEPG 
Sbjct: 580 LHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGH 639

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           S +E+    + F  G+    +   +  +L E+ RK+ E GYV   T  V +++++E +E 
Sbjct: 640 SVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYV-PDTSTVLLNIDEEEKET 698

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            +  HSE+LA+AFGLIS      IRI+KNLR+C DCH   KL+S I  R  +VRD NRFH
Sbjct: 699 ALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFH 758

Query: 593 HFRNGSCSCGDFW 605
           HFR G CSCGD+W
Sbjct: 759 HFREGYCSCGDYW 771



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 199/390 (51%), Gaps = 13/390 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK G   + F  N L+  Y      + AR +FD+M+E +VVS+++++       +
Sbjct: 116 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 175

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVC 166
             +AL L ++M    V P+E    +++   +  A++  GK +H ++   +      +   
Sbjct: 176 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT 235

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+DMY KC  +  AR++F+ +  + VVSWT++I    ++ +  E  ++F     +   
Sbjct: 236 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ-EENI 294

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+  + S+I  C   G L  GK  H  ++R+G   +  +A+ALVDMY KC  +  +  
Sbjct: 295 FPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARA 354

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+   N  V+ +T+M+   A+      + +LF++M + G++P  VT V +L  C+ +G 
Sbjct: 355 LFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGA 414

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWG 405
           +D G + + S   K  +  D    T +VDM  + G ++ A +L  ++I  D      +W 
Sbjct: 415 LDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD----ICMWN 469

Query: 406 TLLSASRLHG----RVDIAVEASNQLIESN 431
            +++   +HG     +DI  E   Q ++ N
Sbjct: 470 AIITGFAMHGYGEEALDIFAEMERQGVKPN 499



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 168/324 (51%), Gaps = 8/324 (2%)

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           F   +V+KAC  ++    GK+IH  +   G   ++ V ++L+ MYG+C  V+ AR VFD 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  R+VVSW+++I + ++N +   ALE+ RE N+  + RP++  + S++N  A    +  
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFM-QVRPSEVAMVSMVNLFADTANMRM 213

Query: 249 GKVAHGVVVR-SGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           GK  H  V+R S  E   V   +AL+DMYAKCG +  + ++FN ++  +VV++T+MI G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
            +         LF  M    I PN++T + ++  C  +G +  G Q L +   + G    
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ-LHAYILRNGFSVS 332

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
               T +VDM G+   +  A  L  S Q   +   ++W  +LSA      +D A    +Q
Sbjct: 333 LALATALVDMYGKCSDIRNARALFDSTQ---NRDVMIWTAMLSAYAQANCIDQAFNLFDQ 389

Query: 427 LIESNQQVAN-AYVTLSNTYALAG 449
           +  S  +      V+L +  A+AG
Sbjct: 390 MRTSGVRPTKVTIVSLLSLCAVAG 413


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 333/549 (60%), Gaps = 8/549 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + N  + N LIN +V+      A ++FDEMLE NV ++ ++++G I     +  L LF++
Sbjct: 20  MRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFRE 79

Query: 119 M--LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           M  LG L  P+EFT  +V++ C+ L     GKQ+H ++  +G+++NLVV SSL  MY K 
Sbjct: 80  MHELGFL--PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKS 137

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             +    +V   M  RNVV+W ++I  +AQN      L+++      S  RP++  L SV
Sbjct: 138 GSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMK-MSGLRPDKITLVSV 196

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           I++ A L  L  G+  H   +++G      V S+L+ MY+KCG +  S K      +P  
Sbjct: 197 ISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDS 256

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V ++SMI     +G G  ++ LF +M   G+  NDVTF+ +L+ACSH+GL ++G+     
Sbjct: 257 VLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKL 316

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M  KYG+ P  +HYTCVVD+LGR+G LDEA  + +S+ ++ D   ++W TLLSA R+H  
Sbjct: 317 MVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEAD--VVIWKTLLSACRIHRN 374

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            D+A   + +++  N Q +  YV LSN +A A  W++V  +R+ M+   + KEPG SW+E
Sbjct: 375 ADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLE 434

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           ++++ + F  G+       E+   L+EL  +MK RGYV   T  VF D + E +E  +  
Sbjct: 435 VKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYV-PDTATVFHDTDSEEKENSLVN 493

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+AFGL++IP G  IR+MKNLR+C DCH   KLISDI  R+ +VRD +RFHHF++
Sbjct: 494 HSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKH 553

Query: 597 GSCSCGDFW 605
           G CSCGD+W
Sbjct: 554 GKCSCGDYW 562



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 5/198 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ +LK G+  N    + L + Y++        ++   M   NVV++ +L+AG    G 
Sbjct: 111 VHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGH 170

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L L+  M  + + P++ T  +VI + + LA L  G+QIH      G    + V SS
Sbjct: 171 FEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSS 230

Query: 169 LVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           L+ MY KC  ++ + +   L+ C   + V W+S+I A+  + +G EA+ +F +   Q   
Sbjct: 231 LISMYSKCGCLEDSMKA--LLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQME-QEGL 287

Query: 227 RPNQHMLASVINACASLG 244
             N     S++ AC+  G
Sbjct: 288 GGNDVTFLSLLYACSHNG 305



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 2/172 (1%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           I    E   L     +H+E +K+G  S    L+ LI+ Y +    + + +   +   P+ 
Sbjct: 197 ISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDS 256

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT- 152
           V ++S++A Y   G+ + A+ LF++M    +  N+ TF +++ ACS       G      
Sbjct: 257 VLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKL 316

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            +E +G +  L   + +VD+ G+   +D A  +   M    +VV W +++ A
Sbjct: 317 MVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSA 368


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 339/559 (60%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L   +    LI  Y + +    AR +FDEM E NVVS+T++++GY   G 
Sbjct: 32  VHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGF 91

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +ML +   PNEFTFATV+ +C+  +    G+QIH+HI    ++ ++ V SS
Sbjct: 92  ASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSS 151

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +  AR VF+ +  R+VVS T+II  +AQ     EALE+F     +     
Sbjct: 152 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS-S 210

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    AS++ A + L  L  GK  H  V+R    F  V+ ++L+DMY+KCG++NY+ K+F
Sbjct: 211 NYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIF 270

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
           N +   +V+++ +M+VG +K+G G   + LF  M     +KP+ VTF+ VL  CSH GL 
Sbjct: 271 NNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLE 330

Query: 348 DEGIQHLDSMYRKYGIIPDA-KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D+G++  D M      I    +HY CV+D+LGR GR++EA++L K +  +P     +WG+
Sbjct: 331 DKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAA--IWGS 388

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+H   +I      +L+E   + A  YV LSN YA AG WE+V ++R  M    +
Sbjct: 389 LLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAV 448

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW+E+    + FYA +    R  EV   +REL  K KE GYV  ++ +++ DV+
Sbjct: 449 IKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLY-DVD 507

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+I+  HSE+LALAFGLIS  +G+ +R++KNLR+C DCH+  K +S +  R   +R
Sbjct: 508 EEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIR 567

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHH   G CSCGD+W
Sbjct: 568 DKNRFHHVAGGICSCGDYW 586



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 148/299 (49%), Gaps = 14/299 (4%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G+++H H+    +   + + + L+ +Y KC  +  AR VFD M  RNVVSWT++I  ++Q
Sbjct: 29  GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQ 88

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
                EAL +F +   +S   PN+   A+V+++C        G+  H  + +   E +  
Sbjct: 89  RGFASEALHLFVQM-LRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIF 147

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V S+L+DMYAK G ++ +  VF  +    VV+ T++I G A+ GL   +L+LF  +   G
Sbjct: 148 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREG 207

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR----KYGIIPDAKHYTCVVDMLGRTGR 382
           +  N VT+  +L A S    +D G Q    + R     Y ++ ++     ++DM  + G 
Sbjct: 208 MSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS-----LIDMYSKCGN 262

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           L+ A K+  ++   P    + W  +L     HG+  I V    +L+    +V    VT 
Sbjct: 263 LNYARKIFNNM---PVRTVISWNAMLVGYSKHGK-GIEVVKLFKLMREENKVKPDSVTF 317



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L R+   S+  T A  +  L     L     VHS +L+          N LI+ Y +   
Sbjct: 203 LQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGN 262

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIK 136
              AR++F+ M    V+S+ +++ GY   G+    + LF+ M   N V P+  TF  V+ 
Sbjct: 263 LNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLS 322

Query: 137 ACS----------MLADLIT-GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
            CS          M  +++  G +I   IE +G          ++D+ G+   V+ A  +
Sbjct: 323 GCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYG---------CVIDLLGRAGRVEEAFEL 373

Query: 186 FDLMGCRNVVS-WTSIIVA 203
              M      + W S++ A
Sbjct: 374 IKKMPFEPTAAIWGSLLGA 392


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/588 (39%), Positives = 347/588 (59%), Gaps = 14/588 (2%)

Query: 29   TKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            T++ F   ++ C  L  L S    H +    GF ++ F  + LI+ Y +  + + AR LF
Sbjct: 1141 TRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALF 1200

Query: 86   DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--------GNLVWPNEFTFATVIKA 137
            DE+   NVVS+TS++ GY+   Q   ALLLF+  L        GN V  +     +V+ A
Sbjct: 1201 DEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSA 1260

Query: 138  CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            CS ++     + +H  +   GF  ++ V ++L+D Y KC     +++VFD M  ++ +SW
Sbjct: 1261 CSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISW 1320

Query: 198  TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
             S+I  +AQ+    EALE+F         R N   L++V+ ACA  G L +GK  H  V+
Sbjct: 1321 NSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI 1380

Query: 258  RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            +   E+N  V ++++DMY KCG V  + K F+R+   +V ++T+M+ G   +G  + +LD
Sbjct: 1381 KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALD 1440

Query: 318  LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
            +F +M+  G+KPN +TFV VL ACSH+GLV+EG    ++M  KY I P  +HY C+VD+ 
Sbjct: 1441 IFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLF 1500

Query: 378  GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            GR G L+EAY L K +++ PD   ++WG+LL A R+H  VD+   A+ +L E +      
Sbjct: 1501 GRAGCLNEAYNLIKRMKMKPDF--VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGY 1558

Query: 438  YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
            YV LSN YA AG W +V  +R  MK   + K PG S VE++ + + F  G+        +
Sbjct: 1559 YVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMI 1618

Query: 498  LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
               L +L  ++++ GYV   T  V  DV++E +E I+ +HSE+LA+AFG+++   G TI 
Sbjct: 1619 YKYLEKLTLELQKIGYVPNMTS-VLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTIN 1677

Query: 558  IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            I+KNLR+C DCH V KLIS +V RDFVVRD  RFHHF++G CSCGD+W
Sbjct: 1678 IIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 210/395 (53%), Gaps = 34/395 (8%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           KA F+  LQ CK+   L  +H++I++SG  ++      LI+ Y    +   A  LF ++ 
Sbjct: 29  KALFL--LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQ 86

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            P   ++  ++      G  + AL+L++ M+   +  ++FTF  VIKAC+    +  GK 
Sbjct: 87  NPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKV 146

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCN-------------------------------D 178
           +H  +  +GF  ++ V ++L+D Y KC                                D
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  ARR+FD +  +NVVSWT++I  + +N Q  EALE+F+    ++   PN++ + S+I 
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIK 265

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC  +G L  G+  H   +++  E    + +AL+DMY+KCGS+  + +VF  +   S+ T
Sbjct: 266 ACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + SMI     +GLG+ +L+LF+EM    +KP+ +TF+GVL AC H   V EG  +   M 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           + YGI P  +HY C+ ++  R+  LDEA+K  K +
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 199/382 (52%), Gaps = 24/382 (6%)

Query: 78   TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + +A   +  + + NV S+ S++A     G    AL  F  +    + P   +F   IK+
Sbjct: 1092 SNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKS 1151

Query: 138  CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            CS L DL++G+  H     FGF+ +L V S+L+DMY KC  +  AR +FD +  RNVVSW
Sbjct: 1152 CSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSW 1211

Query: 198  TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH-------MLASVINACASL-GRLVSG 249
            TS+I  + QN Q   AL +F++F  +  +  + +       ++ SV++AC+ + G+ ++ 
Sbjct: 1212 TSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 1271

Query: 250  KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
             V HG VV+ G + +  V + L+D YAKCG    S KVF+ +     +++ SMI   A+ 
Sbjct: 1272 GV-HGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 1330

Query: 310  GLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            GL   +L++F+ M+   G++ N VT   VL AC+H+G +  G    D + +      D +
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM-----DLE 1385

Query: 369  HYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +  CV    +DM  + GR++ A K    ++   +     W  +++   +HGR   A++  
Sbjct: 1386 YNVCVGTSIIDMYCKCGRVEMAKKTFDRMK---EKNVKSWTAMVAGYGMHGRAKEALDIF 1442

Query: 425  NQLIESNQQVANAYVTLSNTYA 446
             +++ +   V   Y+T  +  A
Sbjct: 1443 YKMVRAG--VKPNYITFVSVLA 1462



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +QIH  I   G   + ++   L+ +Y     +  A  +F  +      +W  II A+  N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               +AL +++    Q     ++     VI AC +   +  GKV HG +++ G   +  V
Sbjct: 104 GLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162

Query: 268 ASALVDMYAKCGSVNYSDKVFNR-------------------------------ISNPSV 296
            + L+D Y KCG   ++ KVF +                               I + +V
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++T+MI G  +      +L+LF  M +  I PN+ T V ++ AC+  G++  G + +  
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-RGIHD 281

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
              K  I       T ++DM  + G + +A ++ +++   P      W +++++  +HG
Sbjct: 282 YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM---PRKSLPTWNSMITSLGVHG 337


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 349/580 (60%), Gaps = 8/580 (1%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   I  LQ  KH+  +  +H++++++G   + F +  L+    +      A ++F    
Sbjct: 32  QKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTH 91

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PNV  YT+L+ G+++ G    A+ L+ +ML + + P+ +  A+++KAC     L  G++
Sbjct: 92  NPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE 151

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG----CRNVVSWTSIIVAHA 205
           +H+     G   N +V   ++++YGKC ++  ARRVF+ M      ++ V WT++I    
Sbjct: 152 VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 211

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           +N + + ALE FR    ++  RPN+  +  V++AC+ LG L  G+  H  + +   E N 
Sbjct: 212 RNEEMNRALEAFRGMQGENV-RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL 270

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V +AL++MY++CGS++ +  VF+ + +  V+TY +MI G +  G  R +++LF  MI R
Sbjct: 271 FVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGR 330

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
            ++P +VTFVGVL+ACSH GLVD G +   SM R YG+ P  +HY C+VD+LGR GRL+E
Sbjct: 331 RLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEE 390

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           AY L +++++ PD   ++ GTLLSA ++H  +++  + +  L +  Q  +  YV LS+ Y
Sbjct: 391 AYDLIRTMKMTPDH--IMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVY 448

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           A +G+W+    +R++MK  G+ KEPGCS +E+ ++ + F  G+    R   +   L EL 
Sbjct: 449 ASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELN 508

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
           R ++  GY   K  +V  D+ED  +E  + +HSERLA+ +GLIS      IR+MKNLR+C
Sbjct: 509 RLLRLEGYHPEKE-VVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVC 567

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH   KLI+ I  R  VVRD NRFH+F NG+CSCGD+W
Sbjct: 568 YDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/599 (38%), Positives = 345/599 (57%), Gaps = 37/599 (6%)

Query: 38  QECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV--- 94
           Q C HL     VH  ++K GF S  F  + L++ Y +      ARQ FDEM E NVV   
Sbjct: 155 QGCVHLG--LQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYN 212

Query: 95  ----------------------------SYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
                                       S+T+++AG+   G  + A+ LF++M    +  
Sbjct: 213 TLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEM 272

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +++TF +V+ AC  +  L  GKQ+H +I    +Q N+ V S+LVDMY KC  +  A  VF
Sbjct: 273 DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVF 332

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
             M C+NVVSWT+++V + QN    EA+++F +      + P+   L SVI++CA+L  L
Sbjct: 333 RKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE-PDDFTLGSVISSCANLASL 391

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G   H   + SG      V++ALV +Y KCGS+  S ++F+ +S    V++T+++ G 
Sbjct: 392 EEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGY 451

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A++G    +L LF  M++ G KP+ VTF+GVL ACS +GLV +G Q  +SM +++ IIP 
Sbjct: 452 AQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPI 511

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
             HYTC++D+  R GRL+EA K    +   PD   + W +LLS+ R H  ++I   A+  
Sbjct: 512 EDHYTCMIDLFSRAGRLEEARKFINKMPFSPDA--IGWASLLSSCRFHRNMEIGKWAAES 569

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           L++       +Y+ LS+ YA  G+WE V +LR  M+  G+ KEPGCSW++ ++Q + F A
Sbjct: 570 LLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSA 629

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
            +       ++ S L +L  KM + GYV      V  DV+D  + +++  HSE+LA+AFG
Sbjct: 630 DDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNS-VLHDVDDSEKIKMLNHHSEKLAIAFG 688

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LI IP G+ IR++KNLR+C DCH+  K IS I +R+ +VRD  RFH F++G CSCGDFW
Sbjct: 689 LIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 212/452 (46%), Gaps = 75/452 (16%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H+ + L+ C+       +H  I+K+      F LN+L++ Y +  +   AR++FD+M + 
Sbjct: 17  HYCELLKHCR---DTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQR 73

Query: 92  NVVSYTSLMAGYINMG-QPQIALLLFQKMLGNLV-WP----------------------- 126
           N+ S+ +L++ Y  +   P++  +       ++V W                        
Sbjct: 74  NLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLML 133

Query: 127 -------NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                  N    +T++   S    +  G Q+H H+  FGFQ  + V S LVDMY K   V
Sbjct: 134 YNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193

Query: 180 DGARRVFDLMGCRNVV-------------------------------SWTSIIVAHAQNA 208
             AR+ FD M  +NVV                               SWT++I    QN 
Sbjct: 194 FCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNG 253

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EA+++FRE   ++ +  +Q+   SV+ AC  +  L  GK  H  ++R+  + N  V 
Sbjct: 254 LDREAIDLFREMRLENLEM-DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG 312

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           SALVDMY KC S+  ++ VF +++  +VV++T+M+VG  + G    ++ +F +M + GI+
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           P+D T   V+ +C++   ++EG Q H  ++    G+I        +V + G+ G +++++
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVS--GLISFITVSNALVTLYGKCGSIEDSH 430

Query: 388 KLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVD 418
           +L   +  VD     + W  L+S     G+ +
Sbjct: 431 RLFSEMSYVD----EVSWTALVSGYAQFGKAN 458



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 142/276 (51%), Gaps = 17/276 (6%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  LQE K       VH+ I+++ +  N F  + L++ Y + K  + A  +F +M   NV
Sbjct: 287 VMALQEGKQ------VHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T+++ GY   G  + A+ +F  M  N + P++FT  +VI +C+ LA L  G Q H  
Sbjct: 341 VSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCR 400

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G    + V ++LV +YGKC  ++ + R+F  M   + VSWT+++  +AQ  + +E 
Sbjct: 401 ALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANET 460

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA----- 268
           L +F         +P++     V++AC+  G +  G      +++     + ++      
Sbjct: 461 LRLFESMLAHGF-KPDKVTFIGVLSACSRAGLVQKGNQIFESMIKE----HRIIPIEDHY 515

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
           + ++D++++ G +  + K  N++  +P  + + S++
Sbjct: 516 TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 176/447 (39%), Gaps = 89/447 (19%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P  F    ++ A +    +   +++   +     Q NL   ++L+  Y K   +    RV
Sbjct: 42  PEIFLLNNLVSAYAKFDRITYARRVFDQMP----QRNLYSWNTLLSSYSKLACLPEMERV 97

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F  M  R++VSW S+I A+A      ++++ +    Y      N+  L++++   +  G 
Sbjct: 98  FHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGC 157

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY------ 299
           +  G   HG VV+ G +    V S LVDMY+K G V  + + F+ +   +VV Y      
Sbjct: 158 VHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG 217

Query: 300 -------------------------TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
                                    T+MI G  + GL R ++DLF EM    ++ +  TF
Sbjct: 218 LMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTF 277

Query: 335 VGVLHACSHSGLVDEGIQ------------------HLDSMYRKYGIIPDAK-------- 368
             VL AC     + EG Q                   L  MY K   I  A+        
Sbjct: 278 GSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNC 337

Query: 369 ----HYTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLSA----SRLHGRV 417
                +T ++   G+ G  +EA K+   +Q   ++PD   L  G+++S+    + L    
Sbjct: 338 KNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL--GSVISSCANLASLEEGA 395

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
                A    + S   V+NA VTL   Y   G  E+ H L SEM           SW   
Sbjct: 396 QFHCRALVSGLISFITVSNALVTL---YGKCGSIEDSHRLFSEMSYVD-----EVSWT-- 445

Query: 478 RDQTYAFYAGNALFERGSEVLSLLREL 504
                A  +G A F + +E L L   +
Sbjct: 446 -----ALVSGYAQFGKANETLRLFESM 467


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/559 (40%), Positives = 341/559 (61%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L  T+    L+  Y +    + AR++ DEM E NVVS+T++++ Y   G 
Sbjct: 74  VHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGH 133

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL +F +M+ +   PNEFTFATV+ +C   + L  GKQIH  I  + +  ++ V SS
Sbjct: 134 SSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSS 193

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +  AR +F+ +  R+VVS T+II  +AQ     EALEMF   + +    P
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMS-P 252

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    AS++ A + L  L  GK AH  V+R    F  V+ ++L+DMY+KCG+++Y+ ++F
Sbjct: 253 NYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLF 312

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLV 347
           + +   + +++ +M+VG +K+GLGR  L+LF  M   + +KP+ VT + VL  CSH  + 
Sbjct: 313 DNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRME 372

Query: 348 DEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D G+   D M   +YG  P  +HY C+VDMLGR GR+DEA++  K +   P  G L  G+
Sbjct: 373 DTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL--GS 430

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+H  VDI      +LIE   + A  YV LSN YA AG W +V+++R+ M +  +
Sbjct: 431 LLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAV 490

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW++     + F+A +    R  EVL+ ++E+  KMK+ GYV      V  DV+
Sbjct: 491 TKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV-PDLSCVLYDVD 549

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSE+LAL FGLI+  +GI IR+ KNLR+C DCH+  K+ S + ER+  +R
Sbjct: 550 EEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLR 609

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH   +G CSCGD+W
Sbjct: 610 DKNRFHQIVDGICSCGDYW 628



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           H   +++NAC     L  G+  H  ++++       + + L+  Y KC  +  + KV + 
Sbjct: 53  HGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 112

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +VV++T+MI   ++ G    +L +F EM+    KPN+ TF  VL +C  +  +  G
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG 172

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            Q +  +  K+         + ++DM  + G++ EA ++
Sbjct: 173 KQ-IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREI 210


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/608 (37%), Positives = 349/608 (57%), Gaps = 38/608 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I+ + E +  +   +VH   +K+ F  + F LN LI+ Y       +A  +F EM+E N
Sbjct: 246 LIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF-EMIEGN 304

Query: 93  ---VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              +VS+ S++ G++  G P  AL LF++M    V PN  T  +V+ AC+   +L  G++
Sbjct: 305 NKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRK 364

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA---- 205
           +  +I+      NL VC++ +DM+ KC +V+ AR +FD M  R+VVSWT+II  +A    
Sbjct: 365 VCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSE 424

Query: 206 ---------------------------QNAQGHEALEMFREFNY-QSRDRPNQHMLASVI 237
                                      Q+ +  EAL +FRE    +S  RP+Q  L S +
Sbjct: 425 HGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTL 484

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           +ACA LG +  G+  HG + +   + N  +A++L+DMY+K G V  + +VF+ I N  V 
Sbjct: 485 SACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVF 544

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            +++MI G A +G G  +++LF +M    +KPN VTF  +L ACSHSGLVDEG +  D M
Sbjct: 545 VWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEM 604

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R YG++P  KHY+C+VD+LGR G L+EA K  + + + P     +WG LL A  +HG +
Sbjct: 605 ERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSAS--VWGALLGACCIHGNL 662

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++A +A ++L+E       AYV LSN YA  G+WE V  LR +M+ +G+ KE GCS +EI
Sbjct: 663 ELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEI 722

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
               + F  G+       ++ + L E+  +++  GYV     ++    E+E +E+ + LH
Sbjct: 723 DGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLH 782

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE++A+AFGLI       IRI+KNLR+CRDCH V K++S +  RD V+RD  RFHHF  G
Sbjct: 783 SEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGG 842

Query: 598 SCSCGDFW 605
            CSC D+W
Sbjct: 843 HCSCQDYW 850



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 206/445 (46%), Gaps = 45/445 (10%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINC--YVRLKKTQVARQLFDEMLEPNVV 94
            Q+C     L  +H+++L++  L + +  + L     +        AR++FD++ +PN+ 
Sbjct: 146 FQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLY 205

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHTH 153
           S+  L+        P  ++L+F +ML +  + PN+FTF  +IKA +     + GK +H  
Sbjct: 206 SWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGM 265

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN--VVSWTSIIVAHAQNAQGH 211
                F  ++ V +SL+  Y  C  +D A  VF+++   N  +VSW S++    Q     
Sbjct: 266 AIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPD 325

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +AL++F     +    PN   + SV++ACA    L  G+     + R+    N  V +A 
Sbjct: 326 KALDLFERMRNEGV-HPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNAT 384

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR------ 325
           +DM+ KCG V  +  +F+ +    VV++T++I G AK      + D+F+ M  +      
Sbjct: 385 IDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444

Query: 326 ---------------------------GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
                                      G +P+ VT +  L AC+  G +D G + +    
Sbjct: 445 VLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG-EWIHGYI 503

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           +K  I  +    T ++DM  ++G +++A ++  SI    +    +W  +++   +HGR +
Sbjct: 504 KKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG---NKDVFVWSAMIAGLAMHGRGE 560

Query: 419 IAVEASNQLIESNQQVANAYVTLSN 443
            A+E    + E+  QV    VT +N
Sbjct: 561 AAIELFLDMQET--QVKPNSVTFTN 583


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 354/576 (61%), Gaps = 11/576 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLE 90
           L  C  L  LA    +HS +++ G   +      L++ Y +         +R++F++M E
Sbjct: 256 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 315

Query: 91  PNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            NV+S+T+++  Y+  G+  + A+ LF KM+   + PN F+F++V+KAC  L+D  TG+Q
Sbjct: 316 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 375

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           ++++    G      V +SL+ MY +   ++ AR+ FD++  +N+VS+ +I+  +A+N +
Sbjct: 376 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 435

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA  +F E    +    +    AS+++  AS+G +  G+  HG +++ G + N  + +
Sbjct: 436 SEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 494

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY++CG++  + +VFN + + +V+++TSMI G AK+G    +L++F++M+  G KP
Sbjct: 495 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 554

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++T+V VL ACSH G++ EG +H +SMY+++GI+P  +HY C+VD+LGR+G L EA + 
Sbjct: 555 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 614

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+ +  D   L+W TLL A R+HG  ++   A+  ++E       AY+ LSN +A AG
Sbjct: 615 INSMPLMADA--LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 672

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W++V  +R  MK   + KE GCSW+E+ ++ + F+ G     +  ++   L +L  K+K
Sbjct: 673 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 732

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY+   T  V  D+E+E +E+ +  HSE++A+AFGLIS  +   IRI KNLR+C DCH
Sbjct: 733 EMGYI-PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCH 791

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS    R+ VVRD NRFHH +NG CSC D+W
Sbjct: 792 TAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 153/564 (27%), Positives = 267/564 (47%), Gaps = 55/564 (9%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           +T+QN      T +  ++     ++      VH ++++SG   ++  LN LI+ Y +   
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 78  TQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
           T+ AR +F+ M    ++VS++++++ + N      A+  F  ML    +PNE+ FA VI+
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 137 ACSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGK-CNDVDGARRVFDLMGCRNV 194
           ACS       G+ I+  +   G+ + ++ V   L+DM+ K   D+  A +VFD M  RN+
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           V+WT +I   AQ     +A+++F +    S   P++   +SV++AC  LG L  GK  H 
Sbjct: 215 VTWTLMITRFAQLGCARDAIDLFLDMEL-SGYVPDRFTYSSVLSACTELGLLALGKQLHS 273

Query: 255 VVVRSGCEFNDVVASALVDMYAKC---GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG- 310
            V+R G   +  V  +LVDMYAKC   GSV+ S KVF ++   +V+++T++I    + G 
Sbjct: 274 RVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGE 333

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQHLD---- 355
             + +++LF +MIS  I+PN  +F  VL AC            +S  V  GI  ++    
Sbjct: 334 CDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGN 393

Query: 356 ---SMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKSIQVDPDG- 399
              SMY + G + DA+             Y  +VD   +  + +EA+ L   I     G 
Sbjct: 394 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI 453

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLI----ESNQQVANAYVTLSNTYALAGEWENVH 455
               + +LLS +   G +    +   +L+    +SNQ + NA +++   Y+  G  E   
Sbjct: 454 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM---YSRCGNIEAAF 510

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            + +EM+   +      SW  +       +A +    R  E+   + E   K  E  YV 
Sbjct: 511 QVFNEMEDRNV-----ISWTSM----ITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 561

Query: 516 GKTGLVFVDVEDEAREEIVGLHSE 539
             +    V +  E ++    ++ E
Sbjct: 562 VLSACSHVGMISEGQKHFNSMYKE 585



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 172/334 (51%), Gaps = 11/334 (3%)

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           PN     + +   +++G+   A      M      P+  T++ ++K+C    +   GK +
Sbjct: 7   PNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLV 66

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQ 209
           H  +   G + + VV ++L+ +Y KC D + AR +F+ MG  R++VSW++++   A N+ 
Sbjct: 67  HRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSM 126

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VA 268
             +A+  F +   +    PN++  A+VI AC++      G++ +G VV++G    DV V 
Sbjct: 127 EWQAIWTFLDM-LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVG 185

Query: 269 SALVDMYAK-CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
             L+DM+ K  G +  + KVF+++   ++VT+T MI   A+ G  R ++DLF +M   G 
Sbjct: 186 CELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGY 245

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT---GRLD 384
            P+  T+  VL AC+  GL+  G Q L S   + G+  D      +VDM  +    G +D
Sbjct: 246 VPDRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 304

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           ++ K+ + +   P+   + W  +++A    G  D
Sbjct: 305 DSRKVFEQM---PEHNVMSWTAIITAYVQSGECD 335


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/588 (39%), Positives = 347/588 (59%), Gaps = 14/588 (2%)

Query: 29   TKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            T++ F   ++ C  L  L S    H +    GF ++ F  + LI+ Y +  + + AR LF
Sbjct: 2014 TRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALF 2073

Query: 86   DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--------GNLVWPNEFTFATVIKA 137
            DE+   NVVS+TS++ GY+   Q   ALLLF+  L        GN V  +     +V+ A
Sbjct: 2074 DEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSA 2133

Query: 138  CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            CS ++     + +H  +   GF  ++ V ++L+D Y KC     +++VFD M  ++ +SW
Sbjct: 2134 CSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISW 2193

Query: 198  TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
             S+I  +AQ+    EALE+F         R N   L++V+ ACA  G L +GK  H  V+
Sbjct: 2194 NSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI 2253

Query: 258  RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            +   E+N  V ++++DMY KCG V  + K F+R+   +V ++T+M+ G   +G  + +LD
Sbjct: 2254 KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALD 2313

Query: 318  LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
            +F +M+  G+KPN +TFV VL ACSH+GLV+EG    ++M  KY I P  +HY C+VD+ 
Sbjct: 2314 IFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLF 2373

Query: 378  GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            GR G L+EAY L K +++ PD   ++WG+LL A R+H  VD+   A+ +L E +      
Sbjct: 2374 GRAGCLNEAYNLIKRMKMKPDF--VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGY 2431

Query: 438  YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
            YV LSN YA AG W +V  +R  MK   + K PG S VE++ + + F  G+        +
Sbjct: 2432 YVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMI 2491

Query: 498  LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
               L +L  ++++ GYV   T  V  DV++E +E I+ +HSE+LA+AFG+++   G TI 
Sbjct: 2492 YKYLEKLTLELQKIGYVPNMTS-VLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTIN 2550

Query: 558  IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            I+KNLR+C DCH V KLIS +V RDFVVRD  RFHHF++G CSCGD+W
Sbjct: 2551 IIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 216/419 (51%), Gaps = 43/419 (10%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           KA F+  LQ CK+   L  +H++I++SG  ++      LI+ Y    +   A  LF ++ 
Sbjct: 29  KALFL--LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQ 86

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            P   ++  ++      G  + AL+L++ M+   +  ++FTF  VIKAC+    +  GK 
Sbjct: 87  NPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKV 146

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCN-------------------------------D 178
           +H  +  +GF  ++ V ++L+D Y KC                                D
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  ARR+FD +  +NVVSWT++I  + +N Q  EALE+F+    ++   PN++ + S+I 
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI-FPNEYTMVSLIK 265

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC  +G L  G+  H   +++  E    + +AL+DMY+KCGS+  + +VF  +   S+ T
Sbjct: 266 ACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + SMI     +GLG+ +L+LF+EM    +KP+ +TF+GVL AC H   V EG  +   M 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK---------SIQVDPDGGPLLWGTLL 408
           + YGI P  +HY C+ ++  R+  LDEA+K  K         SI  D     + W  LL
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLL 444



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 24/386 (6%)

Query: 74   RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
            R   + +A   +  + + NV S+ S++A     G    AL  F  +    + P   +F  
Sbjct: 1961 REDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPC 2020

Query: 134  VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
             IK+CS L DL++G+  H     FGF+ +L V S+L+DMY KC  +  AR +FD +  RN
Sbjct: 2021 TIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 194  VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH-------MLASVINACASL-GR 245
            VVSWTS+I  + QN Q   AL +F++F  +  +  + +       ++ SV++AC+ + G+
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 246  LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
             ++  V HG VV+ G + +  V + L+D YAKCG    S KVF+ +     +++ SMI  
Sbjct: 2141 GITEGV-HGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAV 2199

Query: 306  AAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
             A+ GL   +L++F+ M+   G++ N VT   VL AC+H+G +  G    D +     I 
Sbjct: 2200 YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-----IK 2254

Query: 365  PDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             D ++  CV    +DM  + GR++ A K    ++   +     W  +++   +HGR   A
Sbjct: 2255 MDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK---EKNVKSWTAMVAGYGMHGRAKEA 2311

Query: 421  VEASNQLIESNQQVANAYVTLSNTYA 446
            ++   +++ +   V   Y+T  +  A
Sbjct: 2312 LDIFYKMVRAG--VKPNYITFVSVLA 2335



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +QIH  I   G   + ++   L+ +Y     +  A  +F  +      +W  II A+  N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               +AL +++    Q     ++     VI AC +   +  GKV HG +++ G   +  V
Sbjct: 104 GLSEQALMLYKNMVCQGI-AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162

Query: 268 ASALVDMYAKCGSVNYSDKVFNR-------------------------------ISNPSV 296
            + L+D Y KCG   ++ KVF +                               I + +V
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++T+MI G  +      +L+LF  M +  I PN+ T V ++ AC+  G++  G + +  
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-RGIHD 281

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
              K  I       T ++DM  + G + +A ++ +++   P      W +++++  +HG
Sbjct: 282 YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM---PRKSLPTWNSMITSLGVHG 337


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/549 (39%), Positives = 336/549 (61%), Gaps = 21/549 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I  Y +      AR+LF+E+   +V ++T++++G++  G    A  +F++M 
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG--FQYNLVVCSSLVDMYGKCND 178
                 NE ++       +M+A  +  +QI    E F      N    +++V  Y +C +
Sbjct: 305 EK----NEVSWN------AMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGN 354

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP--NQHMLASV 236
           +D A+ +FD M  R+ +SW ++I  +AQ+ Q  EAL +F +     RD    N+  LA  
Sbjct: 355 IDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK---RDGGILNRSALACA 411

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           +++CA +  L  GK  HG +V++G +   +  +AL+ MY KCGS+  +  VF  I+   +
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++ +MI G A++G G+ +L LF E +   IKP+DVT VGVL ACSH+G VD+G+++ +S
Sbjct: 472 VSWNTMIAGYARHGFGKEALALF-ESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNS 530

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           MY+ YGI  +AKHYTC++D+LGR GRLDEA  L KS+   PD     WG LL ASR+HG 
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAAT--WGALLGASRIHGD 588

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            ++  +A+ ++ E     +  YV LSN YA +G W  V  +RS+M+  G+ K PG SWVE
Sbjct: 589 TELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           I+++T+ F  G+        + + L EL+ ++K+ G+V   T LV  DVE+E +E ++  
Sbjct: 649 IQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSS-TKLVLHDVEEEEKEHMLKY 707

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+AFG++SIP G  IR++KNLR+C DCH+  K IS I +R  +VRD NRFHHF  
Sbjct: 708 HSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSE 767

Query: 597 GSCSCGDFW 605
           GSCSCGD+W
Sbjct: 768 GSCSCGDYW 776



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  + +L     +H  ++K+GF +     N L+  Y +    + A  +F+++ E ++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHT 152
           VS+ +++AGY   G  + AL LF+ M   +  P++ T   V+ ACS    +  G +  ++
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKMTIK-PDDVTLVGVLSACSHTGFVDKGMEYFNS 530

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVA---HAQNA 208
             + +G   N    + ++D+ G+   +D A  +   M    +  +W +++ A   H    
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
            G +A E   E      +  N  M   + N  A+ GR
Sbjct: 591 LGEKAAEKVFEM-----EPDNSGMYVLLSNLYAASGR 622


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 340/589 (57%), Gaps = 35/589 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH ++L+ GF +  F  + L++ Y ++   + AR++F EM    VV Y +L+ G +   
Sbjct: 167 SVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCK 226

Query: 108 QPQIALLLFQKMLG--NLVWP-----------------------------NEFTFATVIK 136
             + A  LFQ M+   ++ W                              +++TF +++ 
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILT 286

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC  LA L  GKQIH +I    ++ N+ V S+LVDMY KC  +  A  VF  M CRN++S
Sbjct: 287 ACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WT++IV + QNA   EA+  F E       +P+   L SVI++CA+L  L  G   H + 
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEMQMDGI-KPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           + SG      V++ALV +Y KCGS+  + ++F+ +S    V++T+++ G A++G  + ++
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           DLF +M++ G+KP+ VTF+GVL ACS +GLV++G  + DSM + +GI+P   HYTC++D+
Sbjct: 466 DLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDL 525

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             R+GR  EA +  K +   PD     W TLLS+ RL G ++I   A+  L+E++ Q   
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDA--FGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +YV L + +A  G+W  V  LR  M+   + KEPGCSW++ +++ + F A +      S 
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSR 643

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +   L  L  KM E GY    +  V  DV D  +  ++  HSE+LA+AFGLI +P+ + I
Sbjct: 644 IYEKLEWLNSKMAEEGYKPDVSS-VLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPI 702

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI+KNLR+C DCH+  K IS I  RD +VRD  RFH F +G+CSCGDFW
Sbjct: 703 RIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 196/411 (47%), Gaps = 76/411 (18%)

Query: 48  SVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV------------ 93
           +VH  ILK+ FL    TF LNHL+  Y +  +   AR++FDEM +PN+            
Sbjct: 33  AVHCLILKT-FLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAH 91

Query: 94  -------------------VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFAT 133
                              VSY +L+ G+ + G P  ++ L++ +L    V P   T + 
Sbjct: 92  SRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSA 151

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK------------------ 175
           +I   S L+D   G  +H  +   GF     V S LVDMY K                  
Sbjct: 152 MIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT 211

Query: 176 -------------CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                        C  ++ A+ +F LM  R+ ++WT+++    QN    EAL++FR    
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +     +Q+   S++ AC +L  L  GK  H  + R+  E N  V SALVDMY+KC S+ 
Sbjct: 272 EGVG-IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIR 330

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++ VF R++  +++++T+MIVG  +      ++  F+EM   GIKP+D T   V+ +C+
Sbjct: 331 LAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390

Query: 343 HSGLVDEGIQH----LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +   ++EG Q     L S   +Y  + +A     +V + G+ G +++A++L
Sbjct: 391 NLASLEEGAQFHCLALVSGLMRYITVSNA-----LVTLYGKCGSIEDAHRL 436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  C +L SL   A  H   L SG +      N L+  Y +    + A +LFDEM   + 
Sbjct: 386 ISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           VS+T+L+ GY   G+ +  + LF+KML N + P+  TF  V+ ACS
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACS 491


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 354/576 (61%), Gaps = 11/576 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLE 90
           L  C  L  LA    +HS +++ G   +      L++ Y +         +R++F++M E
Sbjct: 238 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 297

Query: 91  PNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            NV+S+T+++  Y+  G+  + A+ LF KM+   + PN F+F++V+KAC  L+D  TG+Q
Sbjct: 298 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 357

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           ++++    G      V +SL+ MY +   ++ AR+ FD++  +N+VS+ +I+  +A+N +
Sbjct: 358 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 417

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA  +F E    +    +    AS+++  AS+G +  G+  HG +++ G + N  + +
Sbjct: 418 SEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 476

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY++CG++  + +VFN + + +V+++TSMI G AK+G    +L++F++M+  G KP
Sbjct: 477 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 536

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++T+V VL ACSH G++ EG +H +SMY+++GI+P  +HY C+VD+LGR+G L EA + 
Sbjct: 537 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 596

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+ +  D   L+W TLL A R+HG  ++   A+  ++E       AY+ LSN +A AG
Sbjct: 597 INSMPLMADA--LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 654

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W++V  +R  MK   + KE GCSW+E+ ++ + F+ G     +  ++   L +L  K+K
Sbjct: 655 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 714

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY+   T  V  D+E+E +E+ +  HSE++A+AFGLIS  +   IRI KNLR+C DCH
Sbjct: 715 EMGYI-PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCH 773

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS    R+ VVRD NRFHH +NG CSC D+W
Sbjct: 774 TAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 153/564 (27%), Positives = 267/564 (47%), Gaps = 55/564 (9%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           +T+QN      T +  ++     ++      VH ++++SG   ++  LN LI+ Y +   
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 78  TQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
           T+ AR +F+ M    ++VS++++++ + N      A+  F  ML    +PNE+ FA VI+
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 137 ACSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGK-CNDVDGARRVFDLMGCRNV 194
           ACS       G+ I+  +   G+ + ++ V   L+DM+ K   D+  A +VFD M  RN+
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           V+WT +I   AQ     +A+++F +    S   P++   +SV++AC  LG L  GK  H 
Sbjct: 197 VTWTLMITRFAQLGCARDAIDLFLDMEL-SGYVPDRFTYSSVLSACTELGLLALGKQLHS 255

Query: 255 VVVRSGCEFNDVVASALVDMYAKC---GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG- 310
            V+R G   +  V  +LVDMYAKC   GSV+ S KVF ++   +V+++T++I    + G 
Sbjct: 256 RVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGE 315

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQHLD---- 355
             + +++LF +MIS  I+PN  +F  VL AC            +S  V  GI  ++    
Sbjct: 316 CDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGN 375

Query: 356 ---SMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKSIQVDPDG- 399
              SMY + G + DA+             Y  +VD   +  + +EA+ L   I     G 
Sbjct: 376 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI 435

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLI----ESNQQVANAYVTLSNTYALAGEWENVH 455
               + +LLS +   G +    +   +L+    +SNQ + NA +++   Y+  G  E   
Sbjct: 436 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM---YSRCGNIEAAF 492

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            + +EM+   +      SW  +       +A +    R  E+   + E   K  E  YV 
Sbjct: 493 QVFNEMEDRNV-----ISWTSM----ITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 543

Query: 516 GKTGLVFVDVEDEAREEIVGLHSE 539
             +    V +  E ++    ++ E
Sbjct: 544 VLSACSHVGMISEGQKHFNSMYKE 567


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/604 (37%), Positives = 340/604 (56%), Gaps = 39/604 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   + + K +  L  +H+ +L+ G   N      L   Y  L +   +  +F+   EPN
Sbjct: 50  FASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPN 109

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V S+++++  ++       A   + +ML   V PN FTF++V+K+CS    L +GK +H 
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHC 165

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDV-------------------------------DG 181
                G   +L V + LVD+Y +  DV                               D 
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR +F+ M  R+VV W  +I  +AQ+   +E+L++FR     ++  PN+  + +V++AC 
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM-LVAKAIPNEVTVLAVLSACG 284

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            LG L SG+  H  +   G + N  V +AL+DMY+KCGS+  +  VF+RI +  VV + S
Sbjct: 285 QLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNS 344

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MIVG A +G  + +L LF EM   G KP D+TF+G+L AC H GLV+EG      M  KY
Sbjct: 345 MIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKY 404

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           GI P  +HY C+V++LGR G L+EAY L K++ +  D  P+LWGTLL   RLH  + +  
Sbjct: 405 GIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAAD--PVLWGTLLGCCRLHVNIKLGE 462

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
           E +  L++     +  YV LSN YA  G WE V  +R+ MK  GI KE GCS +E+ ++ 
Sbjct: 463 EIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKV 522

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F AG     +  E+  +L E+   +K RGY   +T +V  D+ +E +E+ + +HSE+L
Sbjct: 523 HEFVAGERKHPKSKEIYVMLNEINSWLKARGYT-PQTDVVLHDLREEQKEQSLEVHSEKL 581

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFGLIS   G T++I+KNLR+C DCH V K+IS+I  R  V+RD NRFHHF +G CSC
Sbjct: 582 AIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSC 641

Query: 602 GDFW 605
           GD+W
Sbjct: 642 GDYW 645


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/564 (38%), Positives = 331/564 (58%), Gaps = 4/564 (0%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           +IS   +H   +K G   + F  N LIN Y +  + + A  +F++M   ++VS+ SL+A 
Sbjct: 256 IISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAA 315

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQY 161
           +    +P IAL ++ KM    V P+  T  ++    + L + ++ + IH  +     F +
Sbjct: 316 FEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLH 375

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ + ++++DMY K   +D AR+VF+ +  ++V+SW S+I  ++QN   +EA++++    
Sbjct: 376 DIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMR 435

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           Y S   PNQ    S++ A + LG L  G  AHG ++++   F+  V++ LVDMY KCG +
Sbjct: 436 YYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKL 495

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  +F  + + S V++ ++I     +G G  ++ LF EM S G+KP+ +TFV +L AC
Sbjct: 496 ADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSAC 555

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLVDEG      M   YGI P  KHY C+VD+ GR G L++A+   K++ V PD   
Sbjct: 556 SHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVS- 614

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +WG LL A R+H  V++    S+ L++   +    YV LSN YA  G WE V  +RS  
Sbjct: 615 -VWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLA 673

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +  G+ K PG S +E+  +   FY GN    +  E+ S LR L  KMK  GYV      V
Sbjct: 674 RDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYV-PDYNFV 732

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             DVED+ +E I+  HSERLA+AFG+IS P   T++I KNLR+C DCH+  K IS I ER
Sbjct: 733 LQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITER 792

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + +VRD NRFHHF++G CSCGD+W
Sbjct: 793 EIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 203/385 (52%), Gaps = 7/385 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   ++ C +L     VH  +LK GF  + +     I+ Y R     +A  LFD M+  +
Sbjct: 145 FPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRD 204

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + ++ ++++G+   G+   AL +F +M    V  +  T ++++  C  L D+I+G  IH 
Sbjct: 205 IGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHV 264

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           +    G +++L VC++L++MY K  ++  A  +F+ M  R++VSW S++ A  QN +   
Sbjct: 265 YAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVI 324

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASAL 271
           AL ++ +  +     P+   L S+ +  A LG  +S +  HG V R     +D+ + +A+
Sbjct: 325 ALGVYNKM-HSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAI 383

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPN 330
           +DMYAK G ++ + KVF  +    V+++ S+I G ++ GL   ++D+++ M    G  PN
Sbjct: 384 IDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPN 443

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V +L A S  G + +G++    + + + +  D    TC+VDM G+ G+L +A  L 
Sbjct: 444 QGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLF 502

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHG 415
             +   P    + W  ++S   LHG
Sbjct: 503 YEV---PHQSSVSWNAIISCHGLHG 524



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 213/442 (48%), Gaps = 32/442 (7%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           TK H  +QL            H+ ++ SG   + F    LIN Y  L     AR  FD++
Sbjct: 54  TKVHLAKQL------------HALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQI 101

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITG 147
              +V ++ S+++ Y  +G    A+  F + L  + +  + +TF  VI+AC  L D   G
Sbjct: 102 QTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---G 158

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +++H  +   GF+ ++ + +S +  Y +   V  A  +FD M  R++ +W ++I     N
Sbjct: 159 RKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLN 218

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  EALE+F E  ++S    +   ++S++  C  L  ++SG + H   ++ G EF+  V
Sbjct: 219 GKVAEALEVFDEMRFKSVSM-DSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +AL++MYAK G +  ++ +FN++    +V++ S++    +      +L ++N+M S G+
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 328 KPNDVTFVGVLHACSHSG--LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
            P+ +T V +    +  G  L    I     + R+   + D      ++DM  + G +D 
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGF--VTRRCWFLHDIALGNAIIDMYAKLGFIDS 395

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSN 443
           A K+ + +   P    + W +L++    +G  + A++  + +   +  V N   +V++  
Sbjct: 396 ARKVFEGL---PVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILT 452

Query: 444 TYALAGEWENVHSLRSEMKRTG 465
            ++  G      +L+  MK  G
Sbjct: 453 AHSQLG------ALKQGMKAHG 468



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 150/312 (48%), Gaps = 27/312 (8%)

Query: 20  RQNKRS----SCHTKAHFIQQLQECKHLISLASVHSEI--------------LKSGFLSN 61
            QNK+       + K H I  + +   L+SLASV +E+               +  FL +
Sbjct: 317 EQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHD 376

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM-L 120
               N +I+ Y +L     AR++F+ +   +V+S+ SL+ GY   G    A+ ++  M  
Sbjct: 377 IALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRY 436

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            +   PN+ T+ +++ A S L  L  G + H  +      +++ V + LVDMYGKC  + 
Sbjct: 437 YSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLA 496

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A  +F  +  ++ VSW +II  H  +  G +A+++F+E   +   +P+     S+++AC
Sbjct: 497 DALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGV-KPDHITFVSLLSAC 555

Query: 241 ASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV--- 296
           +  G +  G+    ++  + G   +      +VD++ + G +   +K FN + N  V   
Sbjct: 556 SHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHL---EKAFNFVKNMPVRPD 612

Query: 297 VTYTSMIVGAAK 308
           V+    ++GA +
Sbjct: 613 VSVWGALLGACR 624


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/609 (38%), Positives = 344/609 (56%), Gaps = 11/609 (1%)

Query: 3   KSLTRNLIFTLAASSLTRQNKR--SSCHTKAHFIQQLQECKHLISLAS---VHSEILKSG 57
           ++L  N  F  A+      N R  SS H   H    LQ C    SL +   +H  +L SG
Sbjct: 34  RALPPNTGFA-ASPPPPSTNPRLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSG 92

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
              +T     L++ Y    +   AR+LFD M + NV  +  L+  Y   G  + A+ L++
Sbjct: 93  LGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYR 152

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
            M+ + V P+ FT+  V+KAC+ L DL TG+++H  +    +  ++ VC+ +VDMY KC 
Sbjct: 153 GMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCG 212

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            VD AR VFD +  R+ V W S+I A+ QN +  EAL + R+        P    L S +
Sbjct: 213 CVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIG-PTIATLVSAV 271

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           +A A    L  G+  HG   R G    D + ++LVDMYAK G V  +  +F ++    +V
Sbjct: 272 SAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELV 331

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           ++ +MI G   +G    +L LFN+M     + P+++TFVGVL AC+H G+V+E  +    
Sbjct: 332 SWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYL 391

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M   Y I P  +HYTCV+D+LG TGR +EAY L K + ++PD G  +WG LL+  ++H  
Sbjct: 392 MVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSG--IWGALLNGCKIHKN 449

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           V++   A  +LIE   + A  YV LSN YA +G+WE    +R  M   G+ K   CSW+E
Sbjct: 450 VELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIE 509

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           ++ +T+ F  G+A   R  E+   L  LE  M + GYV      VF +V+D+ +  +V  
Sbjct: 510 LKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIP-VFHNVDDDEKRNMVRS 568

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSERLA+AFGLIS P G  + + KNLR+C DCH V KLIS IV+R+ ++RDVNR+HHF N
Sbjct: 569 HSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVN 628

Query: 597 GSCSCGDFW 605
           G CSC D+W
Sbjct: 629 GECSCKDYW 637


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 353/576 (61%), Gaps = 11/576 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLE 90
           L  C  L  LA    +HS +++ G   +      L++ Y +         +R++F++M E
Sbjct: 63  LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 122

Query: 91  PNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            NV+S+T+++  Y   G+  + A+ LF KM+   + PN F+F++V+KAC  L+D  TG+Q
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 182

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           ++++    G      V +SL+ MY +   ++ AR+ FD++  +N+VS+ +I+  +A+N +
Sbjct: 183 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 242

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA  +F E    +    +    AS+++  AS+G +  G+  HG +++ G + N  + +
Sbjct: 243 SEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 301

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY++CG++  + +VFN + + +V+++TSMI G AK+G    +L++F++M+  G KP
Sbjct: 302 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 361

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++T+V VL ACSH G++ EG +H +SMY+++GI+P  +HY C+VD+LGR+G L EA + 
Sbjct: 362 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 421

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+ +  D   L+W TLL A R+HG  ++   A+  ++E       AY+ LSN +A AG
Sbjct: 422 INSMPLMADA--LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 479

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W++V  +R  MK   + KE GCSW+E+ ++ + F+ G     +  ++   L +L  K+K
Sbjct: 480 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 539

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY+   T  V  D+E+E +E+ +  HSE++A+AFGLIS  +   IRI KNLR+C DCH
Sbjct: 540 EMGYI-PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCH 598

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS    R+ VVRD NRFHH +NG CSC D+W
Sbjct: 599 TAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 193/361 (53%), Gaps = 17/361 (4%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A ++FD+M E N+V++T ++  +  +G  + A+ LF  M  +   P+ FT+++V+ AC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC---NDVDGARRVFDLMGCRNVVSW 197
           L  L  GKQ+H+ +   G   ++ V  SLVDMY KC     VD +R+VF+ M   NV+SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 198 TSIIVAHAQNAQ-GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           T+II A+AQ+ +   EA+E+F +       RPN    +SV+ AC +L    +G+  +   
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           V+ G    + V ++L+ MYA+ G +  + K F+ +   ++V+Y +++ G AK      + 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ----HLDSMYRKYGIIPDAKHYTC 372
            LFNE+   GI  +  TF  +L   +  G + +G Q     L   Y+    I +A     
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA----- 302

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           ++ M  R G ++ A+++   ++   D   + W ++++    HG    A+E  ++++E+  
Sbjct: 303 LISMYSRCGNIEAAFQVFNEME---DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 359

Query: 433 Q 433
           +
Sbjct: 360 K 360


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 353/576 (61%), Gaps = 11/576 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLE 90
           L  C  L  LA    +HS +++ G   +      L++ Y +         +R++F++M E
Sbjct: 58  LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 117

Query: 91  PNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            NV+S+T+++  Y   G+  + A+ LF KM+   + PN F+F++V+KAC  L+D  TG+Q
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 177

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           ++++    G      V +SL+ MY +   ++ AR+ FD++  +N+VS+ +I+  +A+N +
Sbjct: 178 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 237

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA  +F E    +    +    AS+++  AS+G +  G+  HG +++ G + N  + +
Sbjct: 238 SEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 296

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY++CG++  + +VFN + + +V+++TSMI G AK+G    +L++F++M+  G KP
Sbjct: 297 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 356

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++T+V VL ACSH G++ EG +H +SMY+++GI+P  +HY C+VD+LGR+G L EA + 
Sbjct: 357 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 416

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+ +  D   L+W TLL A R+HG  ++   A+  ++E       AY+ LSN +A AG
Sbjct: 417 INSMPLMADA--LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 474

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W++V  +R  MK   + KE GCSW+E+ ++ + F+ G     +  ++   L +L  K+K
Sbjct: 475 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 534

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY+   T  V  D+E+E +E+ +  HSE++A+AFGLIS  +   IRI KNLR+C DCH
Sbjct: 535 EMGYI-PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCH 593

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS    R+ VVRD NRFHH +NG CSC D+W
Sbjct: 594 TAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 193/361 (53%), Gaps = 17/361 (4%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A ++FD+M E N+V++T ++  +  +G  + A+ LF  M  +   P+ FT+++V+ AC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC---NDVDGARRVFDLMGCRNVVSW 197
           L  L  GKQ+H+ +   G   ++ V  SLVDMY KC     VD +R+VF+ M   NV+SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 198 TSIIVAHAQNAQ-GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           T+II A+AQ+ +   EA+E+F +       RPN    +SV+ AC +L    +G+  +   
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           V+ G    + V ++L+ MYA+ G +  + K F+ +   ++V+Y +++ G AK      + 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ----HLDSMYRKYGIIPDAKHYTC 372
            LFNE+   GI  +  TF  +L   +  G + +G Q     L   Y+    I +A     
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA----- 297

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           ++ M  R G ++ A+++   ++   D   + W ++++    HG    A+E  ++++E+  
Sbjct: 298 LISMYSRCGNIEAAFQVFNEME---DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 354

Query: 433 Q 433
           +
Sbjct: 355 K 355


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/558 (39%), Positives = 344/558 (61%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS + K+GF S+    N LI+ Y R    + AR +FD+M+  +V+S+T+++ G    G 
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL ++Q+M    V PN  T+ +++ ACS  A L  G++IH  +   G   +  V ++
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNT 469

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV+MY  C  V  AR+VFD M  R++V++ ++I  +A +  G EAL++F     +   +P
Sbjct: 470 LVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL-KP 528

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKV 287
           ++    +++NACA+ G L   +  H  +VR G  F+D  V +ALV  YAKCGS + +  V
Sbjct: 529 DKVTYINMLNACANSGSLEWAREIH-TLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F +++  +V+++ ++I G+A++G G+ +L LF  M   G+KP+ VTFV +L ACSH+GL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG ++  SM + + IIP  +HY C+VD+LGR G+LDEA  L K++    +    +WG L
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQAN--TRIWGAL 705

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+HG V +A  A+   ++ +   A  YV LS+ YA AG W++   LR  M++ G+ 
Sbjct: 706 LGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVT 765

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SW+++ D+ + F A +    +  ++ + L  L   MK +GYV   T  V  DV++
Sbjct: 766 KEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYV-PDTRSVMHDVDE 824

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             +E  V  HSERLA+A+GLIS P G  I I KNLR+C DCH   K IS IV+R+ + RD
Sbjct: 825 GEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARD 884

Query: 588 VNRFHHFRNGSCSCGDFW 605
           VNRFHHF++G CSCGD+W
Sbjct: 885 VNRFHHFKDGVCSCGDYW 902



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 207/375 (55%), Gaps = 5/375 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VHS IL +G  S+T     L+  Y +    +  RQ+F++++  +++++ +++ G    G
Sbjct: 248 AVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG 307

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + A  ++ +M    V PN+ T+  ++ AC   A L  GK+IH+ +   GF  ++ V +
Sbjct: 308 YWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQN 367

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+ MY +C  +  AR VFD M  ++V+SWT++I   A++  G EAL +++E   Q+   
Sbjct: 368 ALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ-QAGVE 426

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+    S++NAC+S   L  G+  H  VV +G   +  V + LV+MY+ CGSV  + +V
Sbjct: 427 PNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQV 486

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+R+    +V Y +MI G A + LG+ +L LF+ +   G+KP+ VT++ +L+AC++SG +
Sbjct: 487 FDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 546

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            E  + + ++ RK G   D      +V    + G   +A  + + +        + W  +
Sbjct: 547 -EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM---TKRNVISWNAI 602

Query: 408 LSASRLHGRVDIAVE 422
           +  S  HGR   A++
Sbjct: 603 IGGSAQHGRGQDALQ 617



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 241/469 (51%), Gaps = 44/469 (9%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM- 88
           +++ L+ C   K L++   VH  I++   + + +T+N LIN Y++    + ARQ++ ++ 
Sbjct: 26  YMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS 85

Query: 89  -LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
            +E  V S+ +++ GYI  G  + AL L ++M  + + P+  T  + + +C     L  G
Sbjct: 86  YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWG 145

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           ++IH      G  +++ V + +++MY KC  ++ AR VFD M  ++VVSWT  I  +A  
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +   A E+F++   Q    PN+    SV+NA +S   L  GK  H  ++ +G E +  V
Sbjct: 206 GRSETAFEIFQKME-QEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAV 264

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +ALV MYAKCGS     +VF ++ N  ++ + +MI G A+ G    + +++N+M   G+
Sbjct: 265 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGV 324

Query: 328 KPNDVTFVGVLHACSHSGLV-----------------DEGIQH-LDSMYRKYGIIPDAK- 368
            PN +T+V +L+AC +S  +                 D G+Q+ L SMY + G I DA+ 
Sbjct: 325 MPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARL 384

Query: 369 -----------HYTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLSASRLH 414
                       +T ++  L ++G   EA  + + +Q   V+P+   + + ++L+A    
Sbjct: 385 VFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPN--RVTYTSILNACSSP 442

Query: 415 GRVDIAVEASNQLIESNQQVANAYV--TLSNTYALAGEWENVHSLRSEM 461
             ++       Q++E+     +A+V  TL N Y++ G  ++   +   M
Sbjct: 443 AALEWGRRIHQQVVEAG-LATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 244/509 (47%), Gaps = 58/509 (11%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  CK   +L     +H + +++G L +    N ++N Y +    + AR++FD+M + +V
Sbjct: 133 LSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T  + GY + G+ + A  +FQKM    V PN  T+ +V+ A S  A L  GK +H+ 
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G + +  V ++LV MY KC      R+VF+ +  R++++W ++I   A+     EA
Sbjct: 253 ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEA 312

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
            E++ +   +    PN+     ++NAC +   L  GK  H  V ++G   +  V +AL+ 
Sbjct: 313 SEVYNQMQREGV-MPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALIS 371

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY++CGS+  +  VF+++    V+++T+MI G AK G G  +L ++ EM   G++PN VT
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431

Query: 334 FVGVLHACS-----------HSGLVDEGI-------QHLDSMYRKYGIIPDAKH------ 369
           +  +L+ACS           H  +V+ G+         L +MY   G + DA+       
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI 491

Query: 370 ------YTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLSASRLHGRVDIA 420
                 Y  ++          EA KL   +Q   + PD   + +  +L+A    G ++ A
Sbjct: 492 QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD--KVTYINMLNACANSGSLEWA 549

Query: 421 VEASNQLIE----SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            E    + +    S+  V NA V+   TYA  G + +   +  +M +  +      SW  
Sbjct: 550 REIHTLVRKGGFFSDTSVGNALVS---TYAKCGSFSDASIVFEKMTKRNV-----ISW-- 599

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELE 505
                 A   G+A   RG + L L   ++
Sbjct: 600 -----NAIIGGSAQHGRGQDALQLFERMK 623



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 160/306 (52%), Gaps = 13/306 (4%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           N   +  ++K C  + DL+ G+Q+H HI    T   QY +   ++L++MY +C  ++ AR
Sbjct: 22  NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTV---NALINMYIQCGSIEEAR 78

Query: 184 RVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           +V+  +    R V SW +++V + Q     +AL++ R+   Q    P++  + S +++C 
Sbjct: 79  QVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQ-QHGLAPDRTTIMSFLSSCK 137

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           S G L  G+  H   +++G  F+  VA+ +++MYAKCGS+  + +VF+++   SVV++T 
Sbjct: 138 SPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTI 197

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
            I G A  G    + ++F +M   G+ PN +T++ VL+A S    +  G + + S     
Sbjct: 198 TIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG-KAVHSRILNA 256

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G   D    T +V M  + G   +  ++ + + V+ D   + W T++      G  + A 
Sbjct: 257 GHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRD--LIAWNTMIGGLAEGGYWEEAS 313

Query: 422 EASNQL 427
           E  NQ+
Sbjct: 314 EVYNQM 319


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/562 (39%), Positives = 337/562 (59%), Gaps = 8/562 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++ SGF  + F    LIN Y  L     AR++FDE  E  +  + +L      +G 
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGC 159

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSM----LADLITGKQIHTHIETFGFQYNLV 164
            +  L L+ +M    +  + FT+  V+KAC +    ++ L  GK+IH HI   G++ N+ 
Sbjct: 160 GKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIH 219

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+D+Y K   V  A  VF  M  +N VSW+++I   A+N    +ALE+F+    ++
Sbjct: 220 VMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEA 279

Query: 225 RDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
            D  PN   + +V+ ACA L  L  GK+ HG ++R G +    V +AL+ MY +CG +  
Sbjct: 280 HDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILM 339

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
             +VF+ + N  VV++ S+I     +G G+ ++ +F  MI +G  P+ ++F+ VL ACSH
Sbjct: 340 GQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSH 399

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +GLV+EG    +SM  KY I P  +HY C+VD+LGR  RLDEA KL + +  +P  GP +
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEP--GPTV 457

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG+LL + R+H  V++A  AS  L E   + A  YV L++ YA A  W    S+   ++ 
Sbjct: 458 WGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEA 517

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            G+ K PGCSW+E++ + Y+F + +    +  E+ +LL +L  +MK +GYV  +T +V  
Sbjct: 518 RGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYV-PQTNVVLY 576

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+++E +E IV  HSE+LA+AFGLI+  KG TIRI KNLR+C DCH V K IS    R+ 
Sbjct: 577 DLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREI 636

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           +VRDVNRFHHF++G CSCGD+W
Sbjct: 637 LVRDVNRFHHFKDGVCSCGDYW 658



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 159/322 (49%), Gaps = 13/322 (4%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P + TF  +I +C+    L  G  +H  + + GF  +  + + L++MY +   +D AR+V
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA---- 241
           FD    R +  W ++  A A    G E L+++ + N+      ++     V+ AC     
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPS-DRFTYTFVLKACVVSEL 194

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           S+  L  GK  H  ++R G E N  V + L+D+YAK GSV+Y++ VF  +   + V++++
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 302 MIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           MI   AK  +   +L+LF  M+  +    PN VT V VL AC+    +++G + +     
Sbjct: 255 MIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG-KLIHGYIL 313

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           + G+         ++ M GR G +    ++  +++   +   + W +L+S   +HG    
Sbjct: 314 RRGLDSILPVLNALITMYGRCGEILMGQRVFDNMK---NRDVVSWNSLISIYGMHGFGKK 370

Query: 420 AVEASNQLIESNQQVANAYVTL 441
           A++    +I  +Q  + +Y++ 
Sbjct: 371 AIQIFENMI--HQGSSPSYISF 390



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P Q     +I +CA    L  G   H  +V SG + +  +A+ L++MY + GS++ + KV
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+     ++  + ++    A  G G+  LDL+ +M   GI  +  T+  VL AC  S L 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELS 195

Query: 348 DEGIQ---HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
              +Q    + +   ++G   +    T ++D+  + G +  A  +  ++   P    + W
Sbjct: 196 VSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAM---PTKNFVSW 252

Query: 405 GTLLSASRLHGRVDIAVEASN-QLIESNQQVANAYVTLSNTYALAG 449
             +++    +     A+E     ++E++  V N+   ++   A AG
Sbjct: 253 SAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAG 298


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 349/580 (60%), Gaps = 8/580 (1%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   I  LQ  +H+  +  +H++++++G   + F +  L+    +      A ++F    
Sbjct: 39  QKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTH 98

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PNV  YT+L+ G+++ G    A+ L+ +ML   + P+ +  A+++KAC     L  G++
Sbjct: 99  NPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE 158

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG----CRNVVSWTSIIVAHA 205
           +H+     GF  N +V   ++++YGKC ++  ARRVF+ M      ++ V WT++I    
Sbjct: 159 VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 218

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           +N + + ALE FR    ++  RPN+  +  V++AC+ LG L  G+  H  + +   E N 
Sbjct: 219 RNEETNRALEAFRGMQGENV-RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL 277

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V +AL++MY++CGS++ +  VF+ + +  V+TY +MI G +  G  R +++LF  M+ R
Sbjct: 278 FVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGR 337

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
            ++P +VTFVGVL+ACSH GLVD G +   SM R Y + P  +HY C+VD+LGR GRL+E
Sbjct: 338 RLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEE 397

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           AY L +++++ PD   ++ GTLLSA ++H  +++  + + +L +  Q  +  YV LS+ Y
Sbjct: 398 AYDLIRTMKMTPDH--IMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVY 455

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           A +G+W+    +R++MK  G+ KEPGCS +E+ ++ + F  G+    +   +   L EL 
Sbjct: 456 ASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELN 515

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
           R ++  GY   K  +V  D+ED  +E  + +HSERLA+ +GLIS      IR+MKNLR+C
Sbjct: 516 RLLRLEGYHPEKE-VVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVC 574

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH   KLI+ I  R  VVRD NRFH+F NG+CSCGD+W
Sbjct: 575 YDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 336/579 (58%), Gaps = 7/579 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T  H ++      HL     VH+++ + GF ++ F  N LI  Y + ++   AR +F+ +
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
             P   +VS+T++++ Y   G+P  AL +F +M    V P+     +V+ A + L DL  
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G+ IH  +   G +    +  SL  MY KC  V  A+ +FD M   N++ W ++I  +A+
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    EA++MF E       RP+   + S I+ACA +G L   +  +  V RS    +  
Sbjct: 301 NGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           ++SAL+DM+AKCGSV  +  VF+R  +  VV +++MIVG   +G  R ++ L+  M   G
Sbjct: 360 ISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + PNDVTF+G+L AC+HSG+V EG    + M   + I P  +HY CV+D+LGR G LD+A
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQA 478

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y++ K + V P  G  +WG LLSA + H  V++   A+ QL   +      YV LSN YA
Sbjct: 479 YEVIKCMPVQP--GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYA 536

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            A  W+ V  +R  MK  G++K+ GCSWVE+R +  AF  G+    R  E+   +  +E 
Sbjct: 537 AARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIES 596

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           ++KE G+V  K   +  D+ DE  EE +  HSER+A+A+GLIS P+G  +RI KNLR C 
Sbjct: 597 RLKEGGFVANKDASLH-DLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACV 655

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +CH   KLIS +V+R+ VVRD NRFHHF++G CSCGD+W
Sbjct: 656 NCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 213/412 (51%), Gaps = 15/412 (3%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           AS L   N  S  H+ + +   +    H   L  +H+ +L  G   + F +  LI+    
Sbjct: 8   ASPLLYTN--SGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSS 65

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
                 ARQ+FD++  P +  + +++ GY      Q ALL++  M    V P+ FTF  +
Sbjct: 66  FGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHL 125

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--R 192
           +KACS L+ L  G+ +H  +   GF  ++ V + L+ +Y KC  +  AR VF+ +    R
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPER 185

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            +VSWT+I+ A+AQN +  EALE+F +   +   +P+   L SV+NA   L  L  G+  
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSQMR-KMDVKPDWVALVSVLNAFTCLQDLKQGRSI 244

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H  VV+ G E    +  +L  MYAKCG V  +  +F+++ +P+++ + +MI G AK G  
Sbjct: 245 HASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYA 304

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG---IIPDAKH 369
           R ++D+F+EMI++ ++P+ ++    + AC+  G     ++   SMY   G      D   
Sbjct: 305 REAIDMFHEMINKDVRPDTISITSAISACAQVG----SLEQARSMYEYVGRSDYRDDVFI 360

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            + ++DM  + G ++ A +L     +D D   ++W  ++    LHGR   A+
Sbjct: 361 SSALIDMFAKCGSVEGA-RLVFDRTLDRD--VVVWSAMIVGYGLHGRAREAI 409


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/646 (36%), Positives = 360/646 (55%), Gaps = 50/646 (7%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAH-FIQQLQECKHLISL---ASVHSEILKSGF 58
           ++LT N +F+  A SL  + +R       + F   +  C  L+      S+H  +L  GF
Sbjct: 88  RALTHNGLFS-EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGF 146

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL----- 113
            S+ +  N LI+ Y R      AR++F+EM   +VVS+ SL++GY   G    AL     
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQ 206

Query: 114 --LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
              LF +M+ N   P+  T  ++++AC  L DL  GK +H ++ T G++ +    + L++
Sbjct: 207 SIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 265

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD----- 226
           MY KC ++  ++ VF  M C++ VSW S+I  + QN +  ++L++F   N ++RD     
Sbjct: 266 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFE--NMKARDIITWN 323

Query: 227 ---------------------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
                                       P+   + S++  C+ L     GK  HG + + 
Sbjct: 324 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 383

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G E +  V + L++MY+KCGS+  S +VF  +    VVT+T++I     YG G+ ++  F
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 443

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
            EM + GI P+ V FV ++ ACSHSGLV+EG+ +   M + Y I P  +HY CVVD+L R
Sbjct: 444 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 503

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
           +  LD+A     S+ + PD    +WG LLSA R+ G  +IA   S ++IE N      YV
Sbjct: 504 SALLDKAEDFILSMPLKPDSS--IWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYV 561

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLS 499
            +SN YA  G+W+ V S+R  +K  G+ K+PGCSW+EI+++ Y F  G   FE+  EV  
Sbjct: 562 LVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNK 621

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
           LL  L   M + GY+      V  D++++ + +I+  HSERLA+AFGL++   G  +++M
Sbjct: 622 LLGMLAGLMAKEGYI-ANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVM 680

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+C DCH V K IS IV+R+ +VRD NRFH F++G+CSCGD+W
Sbjct: 681 KNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 170/332 (51%), Gaps = 21/332 (6%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGY 103
           L  +HS I+  G   +      LI  Y   +    +  +F  +  P  NV  + S++   
Sbjct: 32  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYLWNSIIRAL 90

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
            + G    AL L+ +     + P+ +TF +VI AC+ L D    K IH  +   GF  +L
Sbjct: 91  THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + ++L+DMY + ND+D AR+VF+ M  R+VVSW S+I  +  N   +EALE++    YQ
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY----YQ 206

Query: 224 S---------RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           S         + +P+   + S++ AC  LG L  GK  H  ++ SG E +   ++ L++M
Sbjct: 207 SIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINM 266

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAKCG++  S +VF+ +     V++ SMI    + G    SL +F  M +R I    +T+
Sbjct: 267 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI----ITW 322

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             ++ +C HS   + G++ +  M R  G+ PD
Sbjct: 323 NTIIASCVHSEDCNLGLRMISRM-RTEGVTPD 353



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 11/261 (4%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F+++ +A +  A      ++H+ I T G  ++++  + L+  Y    D   +  VF L  
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 191 -CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              NV  W SII A   N    EAL ++ E   + R +P+ +   SVINACA L      
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  V+  G   +  + +AL+DMY +   ++ + KVF  +    VV++ S+I G    
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 310 GLGRFSLD-------LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           G    +L+       LF EM+++  KP+ +T   +L AC H G ++ G    D M    G
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-G 252

Query: 363 IIPDAKHYTCVVDMLGRTGRL 383
              D      +++M  + G L
Sbjct: 253 YECDTTASNILINMYAKCGNL 273


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/557 (39%), Positives = 338/557 (60%), Gaps = 10/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I   G+    F +N L+N YV+    + A  LFDEM E NVVS+T++++ Y N   
Sbjct: 77  VHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLN 136

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL     M    V PN FT+++V++AC  L +L   +Q+H  I   G + ++ V S+
Sbjct: 137 DK-ALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSA 192

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y K +D+D A  VFD M  R++V W SII   AQN+ G+EAL +F+    ++    
Sbjct: 193 LIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMK-RAGFLA 251

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q  L SV+ AC  L  L  G+  H  V++   +   ++ +AL+DMY KCGS+  ++  F
Sbjct: 252 DQATLTSVLRACTGLALLELGRQVHVHVLKFDQDL--ILNNALIDMYCKCGSLEDANSAF 309

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R+    V+++++M+ G A+ G  R +L+LF  M   G +PN +T +GVL ACSH+GLV+
Sbjct: 310 SRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVE 369

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G  +  SM + +G+ P  +HY C++D+LGR GRLDEA KL   ++ +PD   + W TLL
Sbjct: 370 KGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDS--VTWRTLL 427

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R+H  VD+A+ A+ ++IE   + A  Y+ LSN YA    WE+V  +R  M   GI K
Sbjct: 428 GACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRK 487

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PGCSW+E+  Q + F  G+    +  E++  L +L  ++   GYV   T  V  D+E E
Sbjct: 488 TPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYV-PDTNFVLQDLEGE 546

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E+ +  HSE+LA+ FGL+++ +  T+RI KNLR+C DCH   K++S +  R  V+RD 
Sbjct: 547 QKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDP 606

Query: 589 NRFHHFRNGSCSCGDFW 605
            R+HHF++G CSCGD+W
Sbjct: 607 IRYHHFQDGVCSCGDYW 623



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 164/315 (52%), Gaps = 21/315 (6%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V+ +  T++ +IK CS    +  GK++H HI   G++  + V ++L++MY K N ++ A 
Sbjct: 51  VFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAE 110

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE----MFREFNYQSRDRPNQHMLASVINA 239
            +FD M  RNVVSWT++I A++ N    +AL+    MFRE       RPN    +SV+ A
Sbjct: 111 DLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGV-----RPNMFTYSSVLRA 164

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C  L  L   +  H  ++++G E +  V SAL+D+Y+K   ++ +  VF+ +    +V +
Sbjct: 165 CDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMY 358
            S+I G A+   G  +L+LF  M   G   +  T   VL AC+   L++ G Q H+  + 
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK 281

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
               +I +      ++DM  + G L++A   A S  V+ D   + W T+++    +G   
Sbjct: 282 FDQDLILN----NALIDMYCKCGSLEDANS-AFSRMVEKD--VISWSTMVAGLAQNGYSR 334

Query: 419 IAVEASNQLIESNQQ 433
            A+E    + ES  +
Sbjct: 335 QALELFESMKESGSR 349



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 143/274 (52%), Gaps = 6/274 (2%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L +L  +H  I+K+G  S+ F  + LI+ Y +      A  +FDEM   ++V +
Sbjct: 162 LRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            S++ G+        AL LF++M       ++ T  +V++AC+ LA L  G+Q+H H+  
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHV-- 279

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
             F  +L++ ++L+DMY KC  ++ A   F  M  ++V+SW++++   AQN    +ALE+
Sbjct: 280 LKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALEL 339

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR-SGCEFNDVVASALVDMY 275
           F     +S  RPN   +  V+ AC+  G +  G      + +  G +        L+D+ 
Sbjct: 340 FESMK-ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLL 398

Query: 276 AKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAK 308
            + G ++ + K+ + +   P  VT+ +++ GA +
Sbjct: 399 GRAGRLDEAVKLIHEMECEPDSVTWRTLL-GACR 431


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 332/525 (63%), Gaps = 4/525 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A Q+F ++  PN+ ++ +++ GY     P  AL L+++M  + + P+  T+  ++KA + 
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L D+  G+++H+     GF+  + V ++LV MY  C   + A ++F+LM  RN+V+W S+
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  +A N + +EAL +FRE   +  + P+   + S+++ACA LG L  G+ AH  +V+ G
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVE-PDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            + N    +AL+D+YAKCGS+  + KVF+ +   SVV++TS+IVG A  G G+ +L+LF 
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           E+  +G+ P+++TFVGVL+ACSH G+VDEG  +   M  +YGI+P  +HY C+VD+LGR 
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G + +A++  +++ + P+   ++W TLL A  +HG + +   A  QL++   + +  YV 
Sbjct: 392 GLVKQAHEFIQNMPMQPNA--VVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVL 449

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA    W +VH +R  M R G+ K PG S VE+R++ + F  G+    +  E+   
Sbjct: 450 LSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVK 509

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L E+ + +K  GYV   +  V  D+E+E +E  +  HSE++A+AF LI+   GI IR++K
Sbjct: 510 LAEITKLLKLEGYVPHISN-VLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVK 568

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH   KLIS + +R+ VVRD +RFHHF++G CSC D+W
Sbjct: 569 NLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 150/294 (51%), Gaps = 21/294 (7%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT    ++ + +   +     VHS  +++GF S  F  N L++ Y      + A +LF+ 
Sbjct: 141 HTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFEL 200

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M E N+V++ S++ GY   G+P  AL LF++M    V P+ FT  +++ AC+ L  L  G
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 260

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           ++ H ++   G   NL   ++L+D+Y KC  +  A +VFD M  ++VVSWTS+IV  A N
Sbjct: 261 RRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVN 320

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------KVAHGVVVR-- 258
             G EALE+F+E   +    P++     V+ AC+  G +  G       K  +G+V +  
Sbjct: 321 GFGKEALELFKELERKGL-MPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIE 379

Query: 259 -SGCEFNDVVASALVDMYAKCGSVNYSDK-VFNRISNPSVVTYTSMIVGAAKYG 310
             GC         +VD+  + G V  + + + N    P+ V + +++     +G
Sbjct: 380 HYGC---------MVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 424



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 5/252 (1%)

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C+ +  A ++F  +   N+ +W ++I  +A++     ALE++R+ +    + P+ H    
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIE-PDTHTYPF 145

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           ++ A A L  +  G+  H + +R+G E    V + LV MYA CG    + K+F  ++  +
Sbjct: 146 LLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 205

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           +VT+ S+I G A  G    +L LF EM  RG++P+  T V +L AC+  G +  G +   
Sbjct: 206 LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 265

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            M  K G+  +      ++D+  + G + +A+K+   ++   +   + W +L+    ++G
Sbjct: 266 YMV-KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME---EKSVVSWTSLIVGLAVNG 321

Query: 416 RVDIAVEASNQL 427
               A+E   +L
Sbjct: 322 FGKEALELFKEL 333



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 56/294 (19%)

Query: 253 HGVVVRSGCEFN--DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
           H   +R G      D+    +  + + C  ++Y+ ++F++I NP++ T+ +MI G A+  
Sbjct: 60  HAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESE 119

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQ------- 352
               +L+L+ +M    I+P+  T+  +L A +           HS  +  G +       
Sbjct: 120 NPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQN 179

Query: 353 ----------HLDSMYRKYGIIPDAK--HYTCVVDMLGRTGRLDEAYKLAKSI---QVDP 397
                     H +S ++ + ++ +     +  V++     GR +EA  L + +    V+P
Sbjct: 180 TLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 239

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLI----ESNQQVANAYVTLSNTYALAGEWEN 453
           DG  ++  +LLSA    G + +   A   ++    + N    NA + L   YA  G    
Sbjct: 240 DGFTMV--SLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDL---YAKCGSIRQ 294

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            H +  EM+   +      SW        +   G A+   G E L L +ELERK
Sbjct: 295 AHKVFDEMEEKSV-----VSWT-------SLIVGLAVNGFGKEALELFKELERK 336


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 331/545 (60%), Gaps = 4/545 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N    N +I   +R K  + AR+LF+ M + + +++T+++ G+   G    AL +F++M 
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR 264

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              +  +++TF +++ AC  L+ L  GKQIH +I    +  N+ V S+LVDMY KC  + 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIK 324

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A  VF  M C+N++SWT++IV + QN    EA+ +F E      D P+ + L SVI++C
Sbjct: 325 LAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID-PDDYTLGSVISSC 383

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A+L  L  G   H + + SG      V++ALV +Y KCGS+  + ++F+ +S    V++T
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 443

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +++ G A++G  + ++DLF +M+++G+KP+ VTF+GVL ACS +G V++G  +  SM + 
Sbjct: 444 ALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKD 503

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +GI+P   HYTC++D+  R+G+L EA +  K + + PD   + WGTLLSA RL G ++I 
Sbjct: 504 HGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDA--IGWGTLLSACRLRGDMEIG 561

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+  L+E + Q   +YV L + +A  G+W  V  LR  M+   + KEPGCSW++ +++
Sbjct: 562 KWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNK 621

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F A +        +   L  L  KM E GY    +  V  DV D  +  +V  HSE+
Sbjct: 622 VHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSS-VLHDVADTDKVHMVSHHSEK 680

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AFGLI +P+ + IRI+KNLR+C DCH+  K IS I  RD +VRD  RFH F +G CS
Sbjct: 681 LAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCS 740

Query: 601 CGDFW 605
           CGDFW
Sbjct: 741 CGDFW 745



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 204/435 (46%), Gaps = 77/435 (17%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPN----------------------------- 92
           T+ LNHL+  Y +  +   AR++FD M  PN                             
Sbjct: 41  TYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQ 100

Query: 93  --VVSYTSLMAGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGK 148
             +VSY +++AG+   G    A+ ++  +L   + V P+  T +T++ A S L D   GK
Sbjct: 101 RDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGK 160

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGK-------------------------------CN 177
           Q H  I   GF  N  V S LVDMY K                               C 
Sbjct: 161 QFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCK 220

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            V+ ARR+F++M  R+ ++WT+++    QN    EALE+FR   +Q     +Q+   S++
Sbjct: 221 MVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGI-AIDQYTFGSIL 279

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            AC +L  L  GK  H  ++R+  + N  V SALVDMY+KC S+  ++ VF R++  +++
Sbjct: 280 TACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNII 339

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++T++IVG  + G    ++ +F+EM   GI P+D T   V+ +C++   ++EG Q     
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ----- 394

Query: 358 YRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
           +    ++    HY  V    V + G+ G +++A++L   +        + W  L+S    
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ---VSWTALVSGYAQ 451

Query: 414 HGRVDIAVEASNQLI 428
            GR    ++   +++
Sbjct: 452 FGRAKETIDLFEKML 466



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 145/272 (53%), Gaps = 6/272 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L +L     +H+ I+++ +  N F  + L++ Y + +  ++A  +F  M   N+
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+T+L+ GY   G  + A+ +F +M  + + P+++T  +VI +C+ LA L  G Q H  
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCL 398

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G  + + V ++LV +YGKC  ++ A R+FD M   + VSWT+++  +AQ  +  E 
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK-VAHGVVVRSGCEFNDVVASALV 272
           +++F +   +   +P+      V++AC+  G +  G+   H +    G    D   + ++
Sbjct: 459 IDLFEKMLAKGV-KPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMI 517

Query: 273 DMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
           D+Y++ G +  +++   ++  +P  + + +++
Sbjct: 518 DLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 166/415 (40%), Gaps = 86/415 (20%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF- 220
           NL   ++L+        +     +F  M  R++VS+ ++I   +      +A+ ++    
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
              S  RP++  +++++ A ++LG    GK  H  ++R G   N  V S LVDMYAK   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 281 VNYSDKVFNRISNPSVV-------------------------------TYTSMIVGAAKY 309
           V  + + F+ + + +VV                               T+T+M+ G  + 
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ----------------- 352
           GL   +L++F  M  +GI  +  TF  +L AC     +++G Q                 
Sbjct: 251 GLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVG 310

Query: 353 -HLDSMYRKYGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQ---VD 396
             L  MY K   I  A+             +T ++   G+ G  +EA ++   +Q   +D
Sbjct: 311 SALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ----VANAYVTLSNTYALAGEWE 452
           PD   L  G+++S+      ++   +     + S       V+NA VTL   Y   G  E
Sbjct: 371 PDDYTL--GSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL---YGKCGSIE 425

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           + H L  EM     H +   SW        A  +G A F R  E + L  ++  K
Sbjct: 426 DAHRLFDEMS---FHDQ--VSWT-------ALVSGYAQFGRAKETIDLFEKMLAK 468



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  C +L SL   A  H   L SG +      N L+  Y +    + A +LFDEM   + 
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHT 152
           VS+T+L++GY   G+ +  + LF+KML   V P+  TF  V+ ACS    +  G+   H+
Sbjct: 440 VSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHS 499

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
             +  G        + ++D+Y +   +  A      M    + + W +++ A
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSA 551


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 349/589 (59%), Gaps = 7/589 (1%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           ++ +  R    T    +  + + + L    +VH  +L++GF S       L++ Y +   
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
             +AR +FD M    VVS+ S++ GY+  G  + A+L+FQKML   V P   T    + A
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ L DL  GK +H  ++      ++ V +SL+ MY KC  VD A  +F  +  + +VSW
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVV 256
            ++I+ +AQN   +EAL  F E   QSR+ +P+   + SVI A A L      K  HG+V
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEM--QSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +R   + N  V +ALVDMYAKCG+++ + K+F+ ++   V+T+ +MI G   +GLG+ S+
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSV 419

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           +LF EM    IKPND+TF+  L ACSHSGLV+EG+   +SM + YGI P   HY  +VD+
Sbjct: 420 ELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDL 479

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR GRL++A+   + + + P  G  ++G +L A ++H  VD+  +A+ ++ + N     
Sbjct: 480 LGRAGRLNQAWDFIQKMPIKP--GITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGG 537

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            +V L+N YA A  W  V  +R+ M+++G+ K PGCS VEI ++ ++FY+G     +  +
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKK 597

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + S L  L  +++  GYV     +   DVED+ + +++  HSE+LA+AFGL++   G  I
Sbjct: 598 IYSYLETLVDEIRAAGYVPDTNSI--HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPI 655

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            I KNLR+C DCH+  K IS +  R+ +VRD++RFH F++G CSCGD+W
Sbjct: 656 HIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 192/379 (50%), Gaps = 5/379 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++ SGF  N F +  ++N Y + ++   A  +FD M E ++V + ++++GY   G 
Sbjct: 52  IHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGF 111

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            ++AL+L  +M      P+  T  +++ A +    L  G  +H ++   GF+  + V ++
Sbjct: 112 AKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTA 171

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  V  AR +FD M  R VVSW S+I  + Q+     A+ +F++       +P
Sbjct: 172 LVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKM-LDEGVQP 230

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
               +   ++ACA LG L  GK  H +V +   + +  V ++L+ MY+KC  V+ +  +F
Sbjct: 231 TNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIF 290

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + N ++V++ +MI+G A+ G    +L+ F EM SR IKP+  T V V+ A +   +  
Sbjct: 291 KNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPR 350

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +       + R++ +  +    T +VDM  + G +  A KL   +        + W  ++
Sbjct: 351 QAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARH---VITWNAMI 406

Query: 409 SASRLHGRVDIAVEASNQL 427
                HG    +VE   ++
Sbjct: 407 DGYGTHGLGKTSVELFKEM 425



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 185/350 (52%), Gaps = 6/350 (1%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++ GY        AL  F +M  + V P  + F  ++K C   +DL  GK+IH  + T G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F +NL   + +V+MY KC  ++ A  +FD M  R++V W ++I  +AQN     AL +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
             + +   RP+   + S++ A A    L  G   HG V+R+G E    V++ALVDMY+KC
Sbjct: 121 RMSEEGH-RPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GSV+ +  +F+ + + +VV++ SMI G  + G    ++ +F +M+  G++P +VT +G L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
           HAC+  G ++ G + +  +  +  +  D      ++ M  +  R+D A  + K+++   +
Sbjct: 240 HACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR---N 295

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
              + W  ++     +G V+ A+ A  ++   N +  +++  +S   ALA
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIK-PDSFTMVSVIPALA 344



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 14/245 (5%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV 73
           A   +  +N +    T    I  L E         +H  +++     N F +  L++ Y 
Sbjct: 320 AFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYA 379

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           +      AR+LFD M   +V+++ +++ GY   G  + ++ LF++M    + PN+ TF  
Sbjct: 380 KCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLC 439

Query: 134 VIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
            + ACS    +  G      ++  +G +  +    ++VD+ G+   ++ A      M  +
Sbjct: 440 ALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIK 499

Query: 193 NVVSWTSIIVA----HAQNAQGHE-ALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
             ++    ++     H     G + A E+F+     + D    H+L + I A AS+    
Sbjct: 500 PGITVYGAMLGACKIHKNVDLGEKAAFEIFK----LNPDDGGYHVLLANIYATASMW--- 552

Query: 248 SGKVA 252
            GKVA
Sbjct: 553 -GKVA 556


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 343/574 (59%), Gaps = 12/574 (2%)

Query: 37  LQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L++C   K LI    VH+ IL+S F  +    N L+N Y +    + AR++F++M + + 
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++T+L++GY    +P  ALL F +ML     PNEFT ++VIKA +       G Q+H  
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               GF  N+ V S+L+D+Y +   +D A+ VFD +  RN VSW ++I  HA+ +   +A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 214 LEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           LE+F+      RD  RP+    AS+  AC+S G L  GK  H  +++SG +      + L
Sbjct: 247 LELFQGM---LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAK GS++ + K+F+R++   VV++ S++   A++G G+ ++  F EM   GI+PN+
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           ++F+ VL ACSHSGL+DEG  + + M +K GI+P+A HY  VVD+LGR G L+ A +  +
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + ++P     +W  LL+A R+H   ++   A+  + E +      +V L N YA  G W
Sbjct: 423 EMPIEPTAA--IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 480

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
            +   +R +MK +G+ KEP CSWVEI +  + F A +    +  E+     E+  K+KE 
Sbjct: 481 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V V V+ + RE  +  HSE++ALAF L++ P G TI I KN+R+C DCH  
Sbjct: 541 GYV-PDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTA 599

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KL S +V R+ +VRD NRFHHF++G+CSC D+W
Sbjct: 600 IKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 162/292 (55%), Gaps = 19/292 (6%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + T++K C++   LI G+ +H HI    F++++V+ ++L++MY KC  ++ AR+VF+ M 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFRE---FNYQSRDRPNQHMLASVINACASLGRLV 247
            R+ V+WT++I  ++Q+ +  +AL  F +   F Y     PN+  L+SVI A A+  R  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS----PNEFTLSSVIKAAAAERRGC 178

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G   HG  V+ G + N  V SAL+D+Y + G ++ +  VF+ + + + V++ ++I G A
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           +      +L+LF  M+  G +P+  ++  +  ACS +G +++G + + +   K G    A
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVA 297

Query: 368 KHYTCVVDMLGRTGRLDEAYK----LAKSIQVDPDGGPLLWGTLLSASRLHG 415
                ++DM  ++G + +A K    LAK   V        W +LL+A   HG
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-------WNSLLTAYAQHG 342


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 349/589 (59%), Gaps = 6/589 (1%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+  R +  T +  +        L    S+H  I K GF S+    N LI  Y++ + 
Sbjct: 143 MRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRC 202

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            +   ++F+ M  P++VS+ +L++G+ +         +F +ML     PN FTF +V+++
Sbjct: 203 VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRS 262

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           CS L D   GKQ+H HI       +  V ++LVDMY K   ++ A   FD +  R++ SW
Sbjct: 263 CSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSW 322

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T II  +AQ  Q  +A++ FR+   +   +PN++ LAS ++ C+ +  L +G+  H V V
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGI-KPNEYTLASCLSGCSHMATLENGRQLHAVAV 381

Query: 258 RSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           ++G  F D+ V SALVD+Y KCG + +++ +F  + +  +V++ ++I G +++G G  +L
Sbjct: 382 KAG-HFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKAL 440

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           + F  M+S GI P++ TF+GVL ACS  GLV+EG +  DSM + YGI P  +HY C+VD+
Sbjct: 441 EAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDI 500

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR G+ +E     + + + P    L+W T+L A +LHG VD   +A+ +L E    + +
Sbjct: 501 LGRAGKFNEVKIFIEEMNLTPYS--LIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDS 558

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +Y+ LSN +A  G W++V ++R+ M   GI KEPGCSWVE+  Q + F + +    +  E
Sbjct: 559 SYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIRE 618

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + + L +L + +   GYV  KT +V  +V ++ + E +  HSERLAL+F L+S      I
Sbjct: 619 IYAKLDKLGQSLMSIGYV-PKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPI 677

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI KNLR+C DCHD  KLISDI  ++ VVRD+ RFHHF+ G+CSC D W
Sbjct: 678 RIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 193/380 (50%), Gaps = 5/380 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  L+SG   + F    L++ Y +      A ++F ++  P+VV++++++ G    G 
Sbjct: 73  LHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGH 132

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            Q A  LF  M      PN+FT ++++   + + DL  G+ IH  I  +GF+ + +V + 
Sbjct: 133 GQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNP 192

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY K   V+   +VF+ M   ++VSW +++     +        +F +   +   +P
Sbjct: 193 LIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGF-KP 251

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     SV+ +C+SL     GK  H  ++++  + +D V +ALVDMYAK   +  +   F
Sbjct: 252 NMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAF 311

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R+ N  + ++T +I G A+      ++  F +M   GIKPN+ T    L  CSH   ++
Sbjct: 312 DRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLE 371

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q L ++  K G   D    + +VD+ G+ G ++ A  + K + +  D   + W T++
Sbjct: 372 NGRQ-LHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRD--IVSWNTII 427

Query: 409 SASRLHGRVDIAVEASNQLI 428
           S    HG+ + A+EA   ++
Sbjct: 428 SGYSQHGQGEKALEAFRMML 447



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 2/308 (0%)

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           ++A +LF  M E N VS+ +L+ GY  +G  +  L LF KM       ++FT +TV+K C
Sbjct: 2   ELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGC 61

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           +    L  GK +H      G + +  +  SLVDMY KC  V  A +VF  +   +VV+W+
Sbjct: 62  ANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I    Q   G EA E+F     +   RPNQ  L+S+++   ++G L  G+  HG + +
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGA-RPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G E +++V++ L+ MY K   V   +KVF  ++NP +V++ +++ G            +
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F +M+  G KPN  TF+ VL +CS S L  E  + + +   K     D    T +VDM  
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCS-SLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYA 299

Query: 379 RTGRLDEA 386
           +   L++A
Sbjct: 300 KARCLEDA 307



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           A R+F  M  +N VSW +++  +AQ   G + L++F +   +   + ++  L++V+  CA
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMK-ECETKFSKFTLSTVLKGCA 62

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           + G L  GKV H + +RSGCE ++ +  +LVDMY+KCG+V  + KVF +I NP VV +++
Sbjct: 63  NTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSA 122

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G  + G G+ + +LF+ M  +G +PN  T   ++   ++ G +  G Q +     KY
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG-QSIHGCICKY 181

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           G   D      ++ M  ++  +++  K+ +++  +PD   + W  LLS 
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVFEAM-TNPD--LVSWNALLSG 227


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/603 (37%), Positives = 351/603 (58%), Gaps = 14/603 (2%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLIN 70
           A  + +   K S    ++ F   ++ C  L+ L S    H + L  GF  + F  + L++
Sbjct: 136 ALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVD 195

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--------GN 122
            Y +  + + AR LFDE+   N+VS+TS++ GY+       ALLLF++ L          
Sbjct: 196 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDG 255

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V  +     +V+ ACS +++    + +H  +   GF+ +L V ++L+D Y KC ++  +
Sbjct: 256 EVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVS 315

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           RRVFD M  R+V+SW SII  +AQN    E++E+F           N   L++V+ ACA 
Sbjct: 316 RRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 375

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            G    GK  H  V++ G E N  V ++++DMY KCG V  + K F+R+   +V ++++M
Sbjct: 376 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 435

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           + G   +G  + +L++F EM   G+KPN +TFV VL ACSH+GL++EG     +M  ++ 
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD 495

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           + P  +HY C+VD+LGR G L EA+ L K +++ PD   ++WG LL A R+H  VD+   
Sbjct: 496 VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDF--VVWGALLGACRMHKNVDLGEI 553

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           ++ +L E + +    YV LSN YA AG WE+V  +R  MK +G+ K PG S V+I+ + +
Sbjct: 554 SARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVH 613

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F  G+    +  ++   L +L  K++E GYV   T  V  DV  E +E ++ +HSE+LA
Sbjct: 614 VFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTS-VLHDVGHEEKEMVLRVHSEKLA 672

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           +AFG+++   G TI I+KNLR+C DCH   K IS IV+R+ VVRD  RFHHFR+G CSCG
Sbjct: 673 VAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCG 732

Query: 603 DFW 605
           D+W
Sbjct: 733 DYW 735



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 15/372 (4%)

Query: 84  LFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           LF++ ++  NV S+ S++A     G    AL  F  M    + PN  TF   IK+CS L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           DL +G+Q H     FGF+ +L V S+LVDMY KC ++  AR +FD +  RN+VSWTS+I 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRP-------NQHMLASVINACASLGRLVSGKVAHGV 255
            + QN   H AL +F+EF  +            +   + SV++AC+ +      +  HG 
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +++ G E +  V + L+D YAKCG +  S +VF+ ++   V+++ S+I   A+ G+   S
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 316 LDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +++F+ M+  G I  N VT   VL AC+HSG    G + +     K G+  +    T ++
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSII 405

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           DM  + G+++ A K    ++   +     W  +++   +HG    A+E   ++  +   V
Sbjct: 406 DMYCKCGKVEMARKAFDRMR---EKNVKSWSAMVAGYGMHGHAKEALEVFYEM--NMAGV 460

Query: 435 ANAYVTLSNTYA 446
              Y+T  +  A
Sbjct: 461 KPNYITFVSVLA 472


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 335/579 (57%), Gaps = 7/579 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T  H ++      HL     VH+++ + GF ++ F  N LI  Y + ++   AR +F+ +
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
             P   +VS+T++++ Y   G+P  AL +F  M    V P+     +V+ A + L DL  
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G+ IH  +   G +    +  SL  MY KC  V  A+ +FD M   N++ W ++I  +A+
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    EA++MF E       RP+   + S I+ACA +G L   +  +  V RS    +  
Sbjct: 301 NGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           ++SAL+DM+AKCGSV  +  VF+R  +  VV +++MIVG   +G  R ++ L+  M   G
Sbjct: 360 ISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + PNDVTF+G+L AC+HSG+V EG    + M   + I P  +HY CV+D+LGR G LD+A
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHKINPQQQHYACVIDLLGRAGHLDQA 478

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y++ K + V P  G  +WG LLSA + H  V++   A+ QL   +      YV LSN YA
Sbjct: 479 YEVIKCMPVQP--GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYA 536

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            A  W+ V  +R  MK  G++K+ GCSWVE+R +  AF  G+    R  E+   +  +E 
Sbjct: 537 AARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIES 596

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           ++KE G+V  K   +  D+ DE  EE +  HSER+A+A+GLIS P+G  +RI KNLR C 
Sbjct: 597 RLKEGGFVANKDASLH-DLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACV 655

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +CH   KLIS +V+R+ VVRD NRFHHF++G CSCGD+W
Sbjct: 656 NCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 213/412 (51%), Gaps = 15/412 (3%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           AS L   N  S  H+ + +   +    H   L  +H+ +L  G   + F +  LI+    
Sbjct: 8   ASPLLYTN--SGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSS 65

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
                 ARQ+FD++  P +  + +++ GY      Q ALL++  M    V P+ FTF  +
Sbjct: 66  FGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHL 125

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--R 192
           +KACS L+ L  G+ +H  +   GF  ++ V + L+ +Y KC  +  AR VF+ +    R
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPER 185

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            +VSWT+I+ A+AQN +  EALE+F     +   +P+   L SV+NA   L  L  G+  
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSHMR-KMDVKPDWVALVSVLNAFTCLQDLKQGRSI 244

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H  VV+ G E    +  +L  MYAKCG V  +  +F+++ +P+++ + +MI G AK G  
Sbjct: 245 HASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYA 304

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG---IIPDAKH 369
           R ++D+F+EMI++ ++P+ ++    + AC+  G +++      SMY   G      D   
Sbjct: 305 REAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEYVGRSDYRDDVFI 360

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            + ++DM  + G ++ A +L     +D D   ++W  ++    LHGR   A+
Sbjct: 361 SSALIDMFAKCGSVEGA-RLVFDRTLDRD--VVVWSAMIVGYGLHGRAREAI 409


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 329/573 (57%), Gaps = 5/573 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           FI    + K+L     +H+ +  S F  + F  N LI+ Y + +    AR +FD+M   +
Sbjct: 57  FITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKD 116

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +VS+TSL+AGY     P  A+ L   ML     PN FTFA+++KA    AD  TG+QIH 
Sbjct: 117 MVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHA 176

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                G+  ++ V S+L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G  
Sbjct: 177 LAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGES 236

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL  F E   ++         +SV ++ A LG L  GK  H  V++S  +    V + L+
Sbjct: 237 ALMTFAEM-LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLL 295

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAK GS+  + KVF+R+ N  +VT+ SM+   A+YGLG+ ++  F EM   G+  N +
Sbjct: 296 DMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQI 355

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ +L ACSH GLV EG ++ + M ++Y + P+  HY  VV +LGR G L+ A      
Sbjct: 356 TFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFK 414

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + ++P     +WG LL+A R+H    +   A++ + E +   +   V L N YA  G+W+
Sbjct: 415 MPMEPTAA--VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
               +R  MK TG+ KEP CSWVE+ +  + F A +    +  E+  +  E+ +K+++ G
Sbjct: 473 AAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEG 532

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV      V + V+D+ +E  +  HSE+LALAF LI +P G TIRIMKN+R+C DCH  F
Sbjct: 533 YV-PDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAF 591

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS +  R+ VVRD NRFHHF +GSCSCGD+W
Sbjct: 592 KYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 156/310 (50%), Gaps = 15/310 (4%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    + + I AC+   +L   ++IH H+ +  F  +  + +SL+ MY KC  V  AR V
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  +++VSWTS+I  +AQN    EA+ +      + R +PN    AS++ A  +   
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGM-LKGRFKPNGFTFASLLKAAGAYAD 167

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
             +G+  H + V+ G   +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G
Sbjct: 168 SGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISG 227

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G G  +L  F EM+  G +    T+  V  + +  G +++G       +    +I 
Sbjct: 228 FARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG------KWVHAHVIK 281

Query: 366 DAKHYTCVV-----DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             +  T  V     DM  ++G + +A K+   +    +   + W ++L+A   +G    A
Sbjct: 282 SRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVD---NKDLVTWNSMLTAFAQYGLGKEA 338

Query: 421 VEASNQLIES 430
           V    ++ +S
Sbjct: 339 VSHFEEMRKS 348


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 328/554 (59%), Gaps = 4/554 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H+ + K GF ++    N L+  Y++        +L++ M++ +++S+ + ++G  + G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
                L +F  ML     PN +TF +++ +CS L D+  G+Q+H HI       N  VC+
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++ A   F+ +  R++ +WT II  +AQ  QG +AL  FR+   Q   +
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQ-QEGVK 614

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+  LA  ++ C+SL  L  G+  H +V +SG   +  V SALVDMYAKCG +  ++ +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +     + + ++I G A+ G G  +L  F  M+  GI P+ VTF G+L ACSH GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG +H +SMYR +GI P   H  C+VD+LGR G+ DE     + +Q+  +   L+W T+
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNA--LIWETV 792

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L AS++H  + +  +A+N+L E   +  ++Y+ LSN +A  G W++V  +RS M   G+ 
Sbjct: 793 LGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVK 852

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPGCSWVE   Q + F + +    +  E+   L EL+R++    YV  KT  V  +V +
Sbjct: 853 KEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYV-PKTEYVLHNVGE 911

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             ++E +  HSERLAL F LIS      IRI KNLR+CRDCHDV K IS I  ++ VVRD
Sbjct: 912 TEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRD 971

Query: 588 VNRFHHFRNGSCSC 601
           V RFHHF+NG+CSC
Sbjct: 972 VRRFHHFKNGACSC 985



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 206/414 (49%), Gaps = 9/414 (2%)

Query: 32  HFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           ++   L+EC    SL    ++H  I+K     ++     L+N Y + + +  AR +  +M
Sbjct: 114 YYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKM 173

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
            + +VVS+T+L+ G +  G    ++ LFQ+M    + PNEFT AT +KACS+   L  GK
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H      G   +L V S+LVD+Y KC +++ A ++F  M  +N V+W  ++  +AQ  
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
                L++F     +   + N+  L +V+  CA+   L  G+V H ++++ G E N+ + 
Sbjct: 294 DVTGVLKLFCSM-MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
             LVDMY+KCG    +  VF  I  P +V ++++I    + G    S+ LF+ M      
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN  T   +L A +++G +  G Q + +   KYG   D      +V M  + G + +  K
Sbjct: 413 PNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L +S+ VD D   + W   LS     G  D  +     ++E    + N Y  +S
Sbjct: 472 LYESM-VDRD--LISWNAYLSGLHDCGMYDRPLTIFYHMLEEG-FIPNMYTFIS 521



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 152/294 (51%), Gaps = 1/294 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++  K G L + F  + L++ Y +  + ++A ++F  M E N V++  L+ GY   G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               L LF  M+   V  NEFT  TV+K C+   +L  G+ IH+ I   G++ N  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC     A  VF  +   ++V W+++I    Q  Q  E++++F          P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL-GDTLP 413

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ+ + S+++A  + G L  G+  H  V + G E +  V++ALV MY K G V+   K++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
             + +  ++++ + + G    G+    L +F  M+  G  PN  TF+ +L +CS
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 338/557 (60%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +HS ++K GF+ +    N LI+ Y R    + AR LF++M+  +++S+T+++ G    G 
Sbjct: 468  IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL 527

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL +FQ M    + PN  T+ +++ ACS  A L  G++IH  +   G   +  V ++
Sbjct: 528  GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANT 587

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            LV+MY  C  V  AR+VFD M  R++V++ ++I  +A +  G EAL++F     +   +P
Sbjct: 588  LVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL-KP 646

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            ++    +++NACA+ G L   K  H +V++ G   +  + +ALV  YAKCGS + +  VF
Sbjct: 647  DKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVF 706

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            +++   +V+++ ++I G A++G G+  L LF  M   GIKP+ VTFV +L ACSH+GL++
Sbjct: 707  DKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLE 766

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            EG ++  SM R +GI P  +HY C+VD+LGR G+LDE   L K++    +    +WG LL
Sbjct: 767  EGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQAN--TRIWGALL 824

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
             A R+HG V +A  A+   ++ +   A  YV LS+ YA AG W++   LR  M++ G+ K
Sbjct: 825  GACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 884

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            EPG SW+E+ D+ + F A +       ++ + L +L   MK  GYV   T  V  DV++ 
Sbjct: 885  EPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYV-PDTRSVMHDVDEG 943

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +E  V  HSERLA+A+GLIS   G  IRI KNLR+C DCH   K I+ IV+R+ V RDV
Sbjct: 944  EKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDV 1003

Query: 589  NRFHHFRNGSCSCGDFW 605
            NRFHHF++G CSCGD+W
Sbjct: 1004 NRFHHFKDGVCSCGDYW 1020



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 198/363 (54%), Gaps = 5/363 (1%)

Query: 30  KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           +A  ++ L  CK   +L     +H E +K+  L +    N ++N Y +      AR++FD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           +M   +VVS+T ++ GY + G  +IA  +FQKM    V PN  T+  V+ A S  A L  
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GK +H+HI   G + +L V ++LV MY KC      R+VF+ +  R++++W ++I   A+
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
                EA E++ +   +    PN+     ++NAC +   L  G+  H  VV+ G  F+  
Sbjct: 424 GGNWEEASEIYHQMQREGM-MPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V +AL+ MYA+CGS+  +  +FN++    ++++T+MI G AK GLG  +L +F +M   G
Sbjct: 483 VQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG 542

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +KPN VT+  +L+ACS    +D G + +     + G+  DA     +V+M    G + +A
Sbjct: 543 LKPNRVTYTSILNACSSPAALDWG-RRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDA 601

Query: 387 YKL 389
            ++
Sbjct: 602 RQV 604



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 239/488 (48%), Gaps = 45/488 (9%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L +Q  R +       +++  E K L++   VH  I++   + + +T+N LIN Y++   
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGS 191

Query: 78  TQVARQLFDEM--LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
            + ARQ+++++   E  V S+ +++ GY+  G  + AL L ++M  + +     T   ++
Sbjct: 192 IEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLL 251

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
            +C   + L  G++IH         +++ V + +++MY KC  +  AR VFD M  ++VV
Sbjct: 252 SSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVV 311

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWT II  +A       A E+F++   Q    PN+    +V+NA +    L  GK  H  
Sbjct: 312 SWTIIIGGYADCGHSEIAFEIFQKMQ-QEGVVPNRITYINVLNAFSGPAALKWGKTVHSH 370

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           ++ +G E +  V +ALV MYAKCGS     +VF ++ N  ++ + +MI G A+ G    +
Sbjct: 371 ILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEA 430

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGI-------QHLDSM 357
            +++++M   G+ PN +T+V +L+AC            HS +V +G          L SM
Sbjct: 431 SEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISM 490

Query: 358 YRKYGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPL 402
           Y + G I DA+             +T ++  L ++G   EA  + + +Q   + P+   +
Sbjct: 491 YARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPN--RV 548

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIE----SNQQVANAYVTLSNTYALAGEWENVHSLR 458
            + ++L+A      +D       Q+IE    ++  VAN   TL N Y++ G  ++   + 
Sbjct: 549 TYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVAN---TLVNMYSMCGSVKDARQVF 605

Query: 459 SEMKRTGI 466
             M +  I
Sbjct: 606 DRMTQRDI 613



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 119/246 (48%), Gaps = 14/246 (5%)

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           ++  Q   R N      ++  C  +  LV+G+  H  +++     +    +AL++MY +C
Sbjct: 130 QYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQC 189

Query: 279 GSVNYSDKVFNRISNP--SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           GS+  + +V+N++++   +V ++ +M+VG  +YG    +L L  EM   G+     T + 
Sbjct: 190 GSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMR 249

Query: 337 VLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           +L +C     ++ G + H+++M  K  ++ D     C+++M  + G + EA ++   ++ 
Sbjct: 250 LLSSCKSPSALECGREIHVEAM--KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMET 307

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYA--LAGEW 451
                 + W  ++      G  +IA E   Q ++    V N   Y+ + N ++   A +W
Sbjct: 308 K---SVVSWTIIIGGYADCGHSEIAFEIF-QKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 452 -ENVHS 456
            + VHS
Sbjct: 364 GKTVHS 369


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/566 (37%), Positives = 349/566 (61%), Gaps = 5/566 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLI-NCYV-RLKKTQVARQLFDEMLEPNVVSYTSL 99
           H+     VH+ +LK G   +TF +++L+  C + +      A  +F ++ EP+   Y ++
Sbjct: 10  HMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTM 69

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
           + G +N  + + ALLL+  M+   V P++FT+  V+KACS+L  +  G Q+H H+   G 
Sbjct: 70  IRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGL 129

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           + +++V +SL++MYGKC ++  A  VF+ M  ++V SW++II AHA     +E L +  +
Sbjct: 130 EGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGK 189

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
            + + R R  +  L +V++AC  LG    GK  HG+++R+  E N VV ++L+DMY K G
Sbjct: 190 MSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSG 249

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            +    +VF  +S  +  +YT MI G A +G G+ +L +F+EMI  G+ P+DV +VGV  
Sbjct: 250 CLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFS 309

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACSH+GLV+EG+Q   SM  ++ I P  +HY C+VD+LGR G L EAY+L KS+ + P+ 
Sbjct: 310 ACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPN- 368

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
             ++W +LLSA ++H  ++I   A+  L   NQ  +  Y+ L+N YA A +W++V  +R+
Sbjct: 369 -DVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRT 427

Query: 460 EMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTG 519
           ++    + + PG S +E + + Y F + +    + + +  ++ ++E ++K  GY+   T 
Sbjct: 428 KLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYI-PDTS 486

Query: 520 LVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIV 579
            V +DV+DE ++E +  HS++LA+AFGLI   +G  +RI +NLRMC DCH   K IS I 
Sbjct: 487 QVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIY 546

Query: 580 ERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ER+  VRD  RFHHF+NGSCSC D+W
Sbjct: 547 EREITVRDRLRFHHFKNGSCSCKDYW 572


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/564 (40%), Positives = 335/564 (59%), Gaps = 6/564 (1%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           LIS+   +H   ++SGF S       L++ Y +    + ARQLFD MLE NVVS+ S++ 
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMID 310

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            Y+    P+ A+L+FQKML   V P + +    + AC+ L DL  G+ IH      G   
Sbjct: 311 AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDR 370

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N+ V +SL+ MY KC +VD A  +F  +  R +VSW ++I+  AQN +  +AL  F +  
Sbjct: 371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMR 430

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            ++  +P+     SVI A A L      K  HGVV+RS  + N  V +ALVDMYAKCG++
Sbjct: 431 SRTV-KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  +F+ +S   V T+ +MI G   +G G+ +L+LF EM    IKPN VTF+ V+ AC
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLV+ G++    M   Y I     HY  +VD+LGR GRL+EA+     + V P    
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN- 608

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            ++G +L A ++H  V+ A +A+ +L E N      +V L+N Y  A  WE V  +R  M
Sbjct: 609 -VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
            R G+ K PGCS VEI+++ ++F++G+       ++ + L +L   +KE GYV   T LV
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYV-PDTNLV 726

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            + VE++ +E+++  HSE+LA++FGL++   G TI + KNLR+C DCH+  K IS +  R
Sbjct: 727 -LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGR 785

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + VVRD+ RFHHF+NG+CSCGD+W
Sbjct: 786 EIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 172/294 (58%), Gaps = 1/294 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++KSGF  + F +  L N Y + ++   AR++FD M E ++VS+ +++AGY   G 
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            ++AL + + M    + P+  T  +V+ A S L  +  GK+IH +    GF   + + ++
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTA 276

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  ++ AR++FD M  RNVVSW S+I A+ QN    EA+ +F++       +P
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM-LDEGVKP 335

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
               +   ++ACA LG L  G+  H + V  G + N  V ++L+ MY KC  V+ +  +F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++ + ++V++ +MI+G A+ G    +L+ F++M SR +KP+  T+V V+ A +
Sbjct: 396 GKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 170/314 (54%), Gaps = 1/314 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L  L  +   + K+G     F    L++ + R      A ++F+ +     V Y
Sbjct: 44  LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 103

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ G+  +     AL  F +M  + V P  + F  ++K C   A+L  GK+IH  +  
Sbjct: 104 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  +L   + L +MY KC  V+ AR+VFD M  R++VSW +I+  ++QN     ALEM
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
            +    ++  +P+   + SV+ A ++L  +  GK  HG  +RSG +    +++ALVDMYA
Sbjct: 224 VKSMCEENL-KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYA 282

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGS+  + ++F+ +   +VV++ SMI    +    + ++ +F +M+  G+KP DV+ +G
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMG 342

Query: 337 VLHACSHSGLVDEG 350
            LHAC+  G ++ G
Sbjct: 343 ALHACADLGDLERG 356



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +H  A ++  C+SL  L   +    +V ++G        + LV ++ + GSV+ + +VF 
Sbjct: 37  EHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFE 93

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            I +   V Y +M+ G AK      +L  F  M    ++P    F  +L  C     +  
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G + +  +  K G   D    T + +M  +  +++EA K+   +   P+   + W T+++
Sbjct: 154 G-KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRM---PERDLVSWNTIVA 209

Query: 410 ASRLHGRVDIAVEASNQLIESN 431
               +G   +A+E    + E N
Sbjct: 210 GYSQNGMARMALEMVKSMCEEN 231


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/572 (38%), Positives = 333/572 (58%), Gaps = 8/572 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C HL  L     VH  ++ SG+  +T   N LIN Y +      ++++F  M   + 
Sbjct: 323 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 382

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S++  YI  G    A+ LF KM+   V P+  T+  ++   + L DL  GK++H  
Sbjct: 383 VSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCD 441

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +   GF  N+VV ++LVDMY KC ++  + +VF+ M  R++++W +II +   +   +  
Sbjct: 442 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 501

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L M      +    P+   + S++  C+ L     GK  HG + + G E +  V + L++
Sbjct: 502 LRMISRMRTEGV-TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIE 560

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KCGS+  S +VF  +    VVT+T++I     YG G+ ++  F EM + GI P+ V 
Sbjct: 561 MYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 620

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FV ++ ACSHSGLV+EG+ +   M + Y I P  +HY CVVD+L R+  LD+A     S+
Sbjct: 621 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 680

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            + PD    +WG LLSA R+ G  +IA   S ++IE N      YV +SN YA  G+W+ 
Sbjct: 681 PLKPDSS--IWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQ 738

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V S+R  +K  G+ K+PGCSW+EI+++ Y F  G   FE+  EV  LL  L   M + GY
Sbjct: 739 VRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGY 798

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           +      V  D++++ + +I+  HSERLA+AFGL++   G  +++MKNLR+C DCH V K
Sbjct: 799 I-ANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTK 857

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS IV+R+ +VRD NRFH F++G+CSCGD+W
Sbjct: 858 YISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 215/412 (52%), Gaps = 12/412 (2%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAH-FIQQLQECKHLISL---ASVHSEILKSGF 58
           ++LT N +F+  A SL  + +R       + F   +  C  L+      S+H  +L  GF
Sbjct: 88  RALTHNGLFS-EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGF 146

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
            S+ +  N LI+ Y R      AR++F+EM   +VVS+ SL++GY   G    AL ++ +
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 206

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
                V P+ +T ++V++AC  L  +  G  IH  IE  G + +++V + L+ MY K N 
Sbjct: 207 FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 266

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +   RR+FD M  R+ VSW ++I  ++Q     E++++F E   Q   +P+   + S++ 
Sbjct: 267 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQF--KPDLLTITSILQ 324

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC  LG L  GK  H  ++ SG E +   ++ L++MYAKCG++  S +VF+ +     V+
Sbjct: 325 ACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS 384

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + SMI    + G    ++ LF +M+   +KP+ VT+V +L   +  G +  G + L    
Sbjct: 385 WNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLG-KELHCDL 442

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            K G   +      +VDM  + G + ++ K+ ++++       + W T++++
Sbjct: 443 AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARD---IITWNTIIAS 491



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 217/457 (47%), Gaps = 42/457 (9%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGY 103
           L  +HS I+  G   +      LI  Y   +    +  +F  +  P  NV  + S++   
Sbjct: 32  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYLWNSIIRAL 90

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
            + G    AL L+ +     + P+ +TF +VI AC+ L D    K IH  +   GF  +L
Sbjct: 91  THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + ++L+DMY + ND+D AR+VF+ M  R+VVSW S+I  +  N   +EALE++  F   
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL 210

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+ + ++SV+ AC  LG +  G + HG++ + G + + +V + L+ MY K   +  
Sbjct: 211 GV-VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID 269

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
             ++F+++     V++ +MI G ++ GL   S+ LF EM+++  KP+ +T   +L AC H
Sbjct: 270 GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGH 328

Query: 344 SG-----------LVDEGIQH-------LDSMYRKYGII------------PDAKHYTCV 373
            G           ++  G +        L +MY K G +             D+  +  +
Sbjct: 329 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 388

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL----IE 429
           +++  + G  DEA KL K ++ D     + +  LLS S   G + +  E    L      
Sbjct: 389 INVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN 448

Query: 430 SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           SN  V+N   TL + YA  GE  +   +   MK   I
Sbjct: 449 SNIVVSN---TLVDMYAKCGEMGDSLKVFENMKARDI 482



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 172/406 (42%), Gaps = 46/406 (11%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F+++ +A +  A      ++H+ I T G  ++++  + L+  Y    D   +  VF L  
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 191 -CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              NV  W SII A   N    EAL ++ E   + R +P+ +   SVINACA L      
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  V+  G   +  + +AL+DMY +   ++ + KVF  +    VV++ S+I G    
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG-IQH--------------- 353
           G    +L+++    + G+ P+  T   VL AC   G V+EG I H               
Sbjct: 195 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 254

Query: 354 --LDSMYRKYG------------IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI--QVDP 397
             L SMY K+             ++ DA  +  ++    + G  +E+ KL   +  Q  P
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 314

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYALAGEWENVHS 456
           D   L   ++L A    G ++      + +I S  +    A   L N YA  G     + 
Sbjct: 315 D--LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG-----NL 367

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           L S+   +G+  +   SW    +     Y  N  F+   ++  +++
Sbjct: 368 LASQEVFSGMKCKDSVSW----NSMINVYIQNGSFDEAMKLFKMMK 409


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 352/592 (59%), Gaps = 34/592 (5%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK----------------------KT 78
           KH     S+H+ +++ GF  + +T N L+N Y +                        K 
Sbjct: 90  KHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKI 149

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
              R+LFD M   +VVS+ +++AG    G  + AL + ++M    + P+ FT ++++   
Sbjct: 150 DSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIF 209

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           +  A++  GK+IH +    GF  ++ + SSL+DMY KC  V+ +   F L+  R+ +SW 
Sbjct: 210 TEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWN 269

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           SII    QN +  + L  FR    + + +P Q   +SVI ACA L  L  GK  H  ++R
Sbjct: 270 SIIAGCVQNGRFDQGLGFFRRM-LKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR 328

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSL 316
            G + N  +AS+L+DMYAKCG++  +  +FN+I   +  +V++T++I+G A +G    ++
Sbjct: 329 LGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAV 388

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            LF EM+  G+KP  V F+ VL ACSH+GLVDEG ++ +SM R +G+ P  +HY  V D+
Sbjct: 389 SLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADL 448

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR GRL+EAY    ++  +P G   +W TLL+A R H  +++A +  N+++  +     
Sbjct: 449 LGRAGRLEEAYDFISNMGEEPTGS--VWSTLLAACRAHKNIELAEKVVNKILLVDPGNMG 506

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN---ALFER 493
           A+V +SN Y+ A  W +   LR  M++TG+ K P CSW+E+ ++ + F AG+     +++
Sbjct: 507 AHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDK 566

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
            +E L++L E   +M++ GYV   T  V  DV++E + +++  HSERLA+AFG+IS   G
Sbjct: 567 INEALNILLE---QMEKEGYVL-DTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSG 622

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            TIR++KN+R+C DCH   K ++ IV R+ +VRD +RFHHF+NGSCSCGD+W
Sbjct: 623 TTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 176/380 (46%), Gaps = 28/380 (7%)

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
           C+V+    Q+ +        P+ +++  ++  Y + G  + +L  F  +    + P+   
Sbjct: 22  CHVKQLHAQIVKT---TKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHL 78

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN------------- 177
           F ++++A ++       + +H  +   GF ++L   ++L++MY K +             
Sbjct: 79  FPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQAR 138

Query: 178 ---------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
                     +D  R++FD M  R+VVSW ++I  +AQN    EAL M +E   ++  RP
Sbjct: 139 HNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENL-RP 197

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   L+S++        +  GK  HG  +R G + +  + S+L+DMYAKC  V  S   F
Sbjct: 198 DSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAF 257

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +SN   +++ S+I G  + G     L  F  M+   +KP  V+F  V+ AC+H   ++
Sbjct: 258 HLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALN 317

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q L +   + G   +    + ++DM  + G +  A  +   I++  D   + W  ++
Sbjct: 318 LGKQ-LHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEM-CDRDMVSWTAII 375

Query: 409 SASRLHGRVDIAVEASNQLI 428
               +HG    AV    +++
Sbjct: 376 MGCAMHGHALDAVSLFEEML 395



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 3/234 (1%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + ++N R    T +  +    E  ++     +H   ++ GF  + F  + LI+ Y +  +
Sbjct: 190 MGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQ 249

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            +++   F  +   + +S+ S++AG +  G+    L  F++ML   V P + +F++VI A
Sbjct: 250 VELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPA 309

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL--MGCRNVV 195
           C+ L  L  GKQ+H +I   GF  N  + SSL+DMY KC ++  AR +F+   M  R++V
Sbjct: 310 CAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMV 369

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           SWT+II+  A +    +A+ +F E       +P      +V+ AC+  G +  G
Sbjct: 370 SWTAIIMGCAMHGHALDAVSLFEEMLVDGV-KPCYVAFMAVLTACSHAGLVDEG 422


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 331/558 (59%), Gaps = 13/558 (2%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           G    TFT N L+  Y +L +   ++ LF+  ++ ++VS+ ++++ +    +   AL  F
Sbjct: 143 GIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 202

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGK 175
           + M+   V  +  T A+V+ ACS L  L  GK+IH ++        N  V S+LVDMY  
Sbjct: 203 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCN 262

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C  V+  RRVFD +  R +  W ++I  +A+N    +AL +F E    +   PN   +AS
Sbjct: 263 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322

Query: 236 VINACA-SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           V+ AC  SL  +  GK  H   +R+    +  V SALVDMYAKCG +N S +VFN + N 
Sbjct: 323 VMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK 382

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMIS---RG--IKPNDVTFVGVLHACSHSGLVDE 349
           +V+T+  +I+    +G G  +L+LF  M++   RG   KPN+VTF+ V  ACSHSGL+ E
Sbjct: 383 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISE 442

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD--GGPLLWGTL 407
           G+     M   +G+ P + HY CVVD+LGR G+L+EAY+L  ++  + D  G    W +L
Sbjct: 443 GLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA---WSSL 499

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+H  V++   A+  L+     VA+ YV LSN Y+ AG W     +R  M++ G+ 
Sbjct: 500 LGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVK 559

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPGCSW+E RD+ + F AG+    +  ++   L  L  KM++ GYV   T  V  +V++
Sbjct: 560 KEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVP-DTSCVLHNVDE 618

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +E ++  HSE+LA+AFG+++ P G TIR+ KNLR+C DCH   K IS I+ER+ +VRD
Sbjct: 619 DEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRD 678

Query: 588 VNRFHHFRNGSCSCGDFW 605
           V RFHHF+ G+CSCGD+W
Sbjct: 679 VRRFHHFKEGTCSCGDYW 696



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 27/326 (8%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCND------ 178
           P+ F F  V+KA S L DL TG+QIH     FG+   ++ V ++LV+MYGKC        
Sbjct: 90  PDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTF 149

Query: 179 --------------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
                         VD ++ +F+    R++VSW ++I + +Q+ +  EAL  FR    + 
Sbjct: 150 TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG 209

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF-NDVVASALVDMYAKCGSVNY 283
            +  +   +ASV+ AC+ L RL  GK  H  V+R+     N  V SALVDMY  C  V  
Sbjct: 210 VEL-DGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 268

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACS 342
             +VF+ I    +  + +MI G A+ GL   +L LF EMI   G+ PN  T   V+ AC 
Sbjct: 269 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACV 328

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           HS       + + +   +  +  D    + +VDM  + G L+ + ++   +   P+   +
Sbjct: 329 HSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEM---PNKNVI 385

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLI 428
            W  L+ A  +HG+ + A+E    ++
Sbjct: 386 TWNVLIMACGMHGKGEEALELFKNMV 411



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +++   S+    + L++ Y +     ++R++F+EM   NV+++  L+      G+
Sbjct: 340 IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGK 399

Query: 109 PQIALLLFQKML-----GNLVWPNEFTFATVIKACSMLADLITG-----KQIHTH-IETF 157
            + AL LF+ M+     G    PNE TF TV  ACS    +  G     +  H H +E  
Sbjct: 400 GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 459

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVA 203
              Y  V     VD+ G+   ++ A  + + M      V +W+S++ A
Sbjct: 460 SDHYACV-----VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 502


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 353/611 (57%), Gaps = 39/611 (6%)

Query: 31  AHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +HF+ QLQ C    S ++   +HS+I+K+GF  ++   N L++ Y +      A QLFDE
Sbjct: 4   SHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDE 63

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLIT 146
           M   + VS+ S++  +     P+  L +   M   + + P+ F FA +++ACS L  L  
Sbjct: 64  MPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRL 123

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GKQ+H       F  + VV SSL+DMY KC   D AR VFD +  +N VSWTS+I  +A+
Sbjct: 124 GKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYAR 183

Query: 207 NAQGHEALEMFRE----------------------------FNYQSR---DRPNQHMLAS 235
           + +  EA+++F +                            FN   R   D  +  +L+S
Sbjct: 184 SGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSS 243

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+  CA+L  L  GK  HG+V+  G E    +++ALVDMYAKC  +  +  +F R+    
Sbjct: 244 VVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKD 303

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           V+++TS+IVG A++G    +L L++EM+   IKPN+VTFVG+L+ACSH+GLV  G +   
Sbjct: 304 VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFR 363

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           SM   Y I P  +HYTC++D+L R+G LDEA  L   I   PD     W +LLSA   H 
Sbjct: 364 SMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPT--WASLLSACMRHN 421

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            +++ V  ++++++   +  + Y+ LSN YA A  W +V  +R  M    + KEPG S +
Sbjct: 422 NLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSI 481

Query: 476 EIRDQTYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +    +  F+AG +      +E+ +LL++L+ +M++RGYV   T  V  D+E + +E+ +
Sbjct: 482 DFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPN-TSFVLYDIEQQEKEKQL 540

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSERLA+A+GL+    G  IRI+KNLR+C DCH+V K ISDIV+R+ +VRD  R+HHF
Sbjct: 541 FWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHF 600

Query: 595 RNGSCSCGDFW 605
           + G CSC DFW
Sbjct: 601 KEGKCSCNDFW 611


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 344/557 (61%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K    S+ F    L++ Y +    + AR  F+ + E +++++ ++++GY    +
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +M    +  N+ T +T++K+ + L  +   +Q+H      GF  ++ V +S
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D YGKC+ V+ A R+F+     ++VS+TS+I A+AQ  QG EAL++F E       +P
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ-DMELKP 532

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++ + +S++NACA+L     GK  H  +++ G   +    ++LV+MYAKCGS++ + + F
Sbjct: 533 DRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAF 592

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++   +V++++MI G A++G GR +L LFN+M+  G+ PN +T V VL AC+H+GLV 
Sbjct: 593 SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVT 652

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E   + +SM   +G  P  +HY C++D+LGR G+++EA +L   +  + +    +WG LL
Sbjct: 653 EAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS--VWGALL 710

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A+R+H  V++   A+  L     + +  +V L+N YA AG+WENV  +R  M+ + + K
Sbjct: 711 GAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKK 770

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E++D+ Y F  G+    R  E+ + L EL   M + GYV     +   DVE  
Sbjct: 771 EPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV-PMVEIDLHDVEQS 829

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+AFGLI+ P+G  IR+ KNLR+C DCH  FK I  IV R+ +VRD+
Sbjct: 830 EKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDI 889

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++GSCSCGD+W
Sbjct: 890 NRFHHFKDGSCSCGDYW 906



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 192/349 (55%), Gaps = 25/349 (7%)

Query: 29  TKAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T   + + L +C   K L     +H+ I KSG   +    NHLIN Y + +    AR+L 
Sbjct: 55  TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLV 114

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           DE  EP++VS+++L++GY   G    AL+ F +M    V  NEFTF++V+KACS++ DL 
Sbjct: 115 DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLR 174

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            GKQ+H  +   GF+ ++ V ++LV MY KC++   ++R+FD +  RNVVSW ++   + 
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           Q     EA+ +F E    S  +PN+  L+S++NAC  L     GK+ HG +++ G +++ 
Sbjct: 235 QXDFCGEAVGLFYEM-VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM--- 322
             A+ALVDMYAK G +  +  VF +I  P +V++ ++I G   +     +L+L  +M   
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353

Query: 323 ISRGIKPNDVT---FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +   +   D+    FV V       GLVD        MY K  ++ DA+
Sbjct: 354 LHSSLMKMDMESDLFVSV-------GLVD--------MYSKCDLLEDAR 387



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 200/393 (50%), Gaps = 34/393 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K G+  + F+ N L++ Y ++     A  +F+++ +P++VS+ +++AG +    
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEH 339

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL L  +M                            +Q+H+ +     + +L V   
Sbjct: 340 HEQALELLGQM---------------------------KRQLHSSLMKMDMESDLFVSVG 372

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC+ ++ AR  F+L+  +++++W +II  ++Q  +  EAL +F E + +     
Sbjct: 373 LVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF- 431

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ  L++++ + A L  +   +  HG+ V+SG   +  V ++L+D Y KC  V  ++++F
Sbjct: 432 NQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIF 491

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +   +V++TSMI   A+YG G  +L LF EM    +KP+      +L+AC++    +
Sbjct: 492 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFE 551

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q L     KYG + D      +V+M  + G +D+A    ++     + G + W  ++
Sbjct: 552 QGKQ-LHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA---GRAFSELTERGIVSWSAMI 607

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
                HG    A++  NQ+++  + V+  ++TL
Sbjct: 608 GGLAQHGHGRQALQLFNQMLK--EGVSPNHITL 638



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 158/320 (49%), Gaps = 8/320 (2%)

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           PQ   +L     GN   P   +++ ++  C     L  G QIH HI   G   +  + + 
Sbjct: 38  PQTTAILNLIDKGNFT-PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNH 96

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+++Y KC     AR++ D     ++VSW+++I  +AQN  G  AL  F E +     + 
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV-KC 155

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+   +SV+ AC+ +  L  GK  HGVVV SG E +  VA+ LV MYAKC     S ++F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + I   +VV++ ++     +      ++ LF EM+  GIKPN+ +   +++AC  +GL D
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRD 273

Query: 349 EGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
                +   Y  K G   D      +VDM  + G L +A  + + I+  PD   + W  +
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPD--IVSWNAV 330

Query: 408 LSASRLHGRVDIAVEASNQL 427
           ++   LH   + A+E   Q+
Sbjct: 331 IAGCVLHEHHEQALELLGQM 350


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 346/575 (60%), Gaps = 5/575 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI-NCYV-RLKKTQVARQLFDEMLE 90
           ++  L+ CK +     VH+ ILK G   ++F  ++L+ +C + R    + A  +F ++ E
Sbjct: 34  WLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEE 93

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           P    Y +++ G +N    + ALLL+ +ML   + P+ FT+  V+KACS+L  L  G QI
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQI 153

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H H+   G + ++ V + L+ MYGKC  ++ A  VF+ M  ++V SW+SII AHA     
Sbjct: 154 HAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMW 213

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           HE L +  + + + R R  + +L S ++AC  LG    G+  HG+++R+  E N VV ++
Sbjct: 214 HECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTS 273

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+DMY KCGS+     VF  +++ +  +YT MI G A +G GR +L +F++M+  G+ P+
Sbjct: 274 LIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPD 333

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           DV +VGVL ACSH+GLV EG Q  + M  ++ I P  +HY C+VD++GR G L EAY L 
Sbjct: 334 DVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLI 393

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           KS+ + P+   ++W +LLSA ++H  ++I   A++ + + N+     Y+ L+N YA A +
Sbjct: 394 KSMPIKPND--VVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQK 451

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W NV  +R+EM    + + PG S VE     Y F + +    +   +  +++++E ++K 
Sbjct: 452 WANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKF 511

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GY    +  V +DV+++ + + +  HS++LA+AF LI   +G  +RI +NLRMC DCH 
Sbjct: 512 EGYTPDMSQ-VLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHT 570

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K IS I ER+  VRD NRFHHF++G+CSC D+W
Sbjct: 571 YTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 344/557 (61%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K    S+ F    L++ Y +    + AR  F+ + E +++++ ++++GY    +
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 440

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +M    +  N+ T +T++K+ + L  +   +Q+H      GF  ++ V +S
Sbjct: 441 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 500

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D YGKC+ V+ A R+F+     ++VS+TS+I A+AQ  QG EAL++F E       +P
Sbjct: 501 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ-DMELKP 559

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++ + +S++NACA+L     GK  H  +++ G   +    ++LV+MYAKCGS++ + + F
Sbjct: 560 DRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAF 619

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++   +V++++MI G A++G GR +L LFN+M+  G+ PN +T V VL AC+H+GLV 
Sbjct: 620 SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVT 679

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E   + +SM   +G  P  +HY C++D+LGR G+++EA +L   +  + +    +WG LL
Sbjct: 680 EAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS--VWGALL 737

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A+R+H  V++   A+  L     + +  +V L+N YA AG+WENV  +R  M+ + + K
Sbjct: 738 GAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKK 797

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E++D+ Y F  G+    R  E+ + L EL   M + GYV     +   DVE  
Sbjct: 798 EPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV-PMVEIDLHDVEQS 856

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+AFGLI+ P+G  IR+ KNLR+C DCH  FK I  IV R+ +VRD+
Sbjct: 857 EKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDI 916

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++GSCSCGD+W
Sbjct: 917 NRFHHFKDGSCSCGDYW 933



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 210/385 (54%), Gaps = 8/385 (2%)

Query: 29  TKAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T   + + L +C   K L     +H+ I KSG   +    NHLIN Y + +    AR+L 
Sbjct: 55  TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLV 114

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           DE  EP++VS+++L++GY   G    AL+ F +M    V  NEFTF++V+KACS++ DL 
Sbjct: 115 DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLR 174

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            GKQ+H  +   GF+ ++ V ++LV MY KC++   ++R+FD +  RNVVSW ++   + 
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           Q     EA+ +F E    S  +PN+  L+S++NAC  L     GK+ HG +++ G +++ 
Sbjct: 235 QIDFCGEAVGLFYEM-VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
             A+ALVDMYAK G +  +  VF +I  P +V++ ++I G   +     +L+L  +M   
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRS 353

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           GI PN  T    L AC+  GL + G Q L S   K  +  D      +VDM  +   L++
Sbjct: 354 GICPNIFTLSSALKACAGMGLKELGRQ-LHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 412

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSA 410
           A     +  + P+   + W  ++S 
Sbjct: 413 A---RMAFNLLPEKDLIAWNAIISG 434



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 230/498 (46%), Gaps = 59/498 (11%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++ SGF  + F  N L+  Y +  +   +++LFDE+ E NVVS+ +L + Y+ +  
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDF 238

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF +M+ + + PNEF+ ++++ AC+ L D   GK IH ++   G+ ++    ++
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY K  D+  A  VF+ +   ++VSW ++I     +    +ALE+  +   +S   P
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK-RSGICP 357

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L+S + ACA +G    G+  H  +++   E +  V+  LVDMY+KC  +  +   F
Sbjct: 358 NIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAF 417

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF---------VGVLH 339
           N +    ++ + ++I G ++Y     +L LF EM   GI  N  T          + V+H
Sbjct: 418 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 477

Query: 340 ACS--HSGLVDEG----IQHLDSMYRKYG---------------IIPDAKHYTCVVDMLG 378
            C   H   V  G    I  ++S+   YG                I D   +T ++    
Sbjct: 478 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 537

Query: 379 RTGRLDEAYKL---AKSIQVDPDGGPLLWGTLLSASRLHGRVDI-AVEASNQL---IESN 431
           + G+ +EA KL    + +++ PD         + +S L+   ++ A E   QL   I   
Sbjct: 538 QYGQGEEALKLFLEMQDMELKPD-------RFVCSSLLNACANLSAFEQGKQLHVHILKY 590

Query: 432 QQVANAYV--TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNA 489
             V + +   +L N YA  G  ++     SE+   GI      SW        A   G A
Sbjct: 591 GFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI-----VSWS-------AMIGGLA 638

Query: 490 LFERGSEVLSLLRELERK 507
               G + L L  ++ ++
Sbjct: 639 QHGHGRQALQLFNQMLKE 656



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 166/342 (48%), Gaps = 9/342 (2%)

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           PQ   +L     GN   P   +++ ++  C     L  G QIH HI   G   +  + + 
Sbjct: 38  PQTTAILNLIDKGNFT-PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNH 96

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+++Y KC +   AR++ D     ++VSW+++I  +AQN  G  AL  F E +     + 
Sbjct: 97  LINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV-KC 155

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+   +SV+ AC+ +  L  GK  HGVVV SG E +  VA+ LV MYAKC     S ++F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + I   +VV++ ++     +      ++ LF EM+  GIKPN+ +   +++AC  +GL D
Sbjct: 216 DEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRD 273

Query: 349 EGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
                +   Y  K G   D      +VDM  + G L +A  + + I+  PD   + W  +
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPD--IVSWNAV 330

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           ++   LH   + A+E   Q+  S     N +   S   A AG
Sbjct: 331 IAGCVLHEHHEQALELLGQMKRSG-ICPNIFTLSSALKACAG 371


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 353/611 (57%), Gaps = 39/611 (6%)

Query: 31  AHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +HF+ QLQ C    S ++   +HS+I+K+GF  ++   N L++ Y +      A QLFDE
Sbjct: 4   SHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDE 63

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLIT 146
           M   + VS+ S++  +     P+  L +   M   + + P+ F FA +++ACS L  L  
Sbjct: 64  MPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRL 123

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GKQ+H       F  + VV SSL+DMY KC   D AR VFD +  +N VSWTS+I  +A+
Sbjct: 124 GKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYAR 183

Query: 207 NAQGHEALEMFRE----------------------------FNYQSR---DRPNQHMLAS 235
           + +  EA+++F +                            FN   R   D  +  +L+S
Sbjct: 184 SGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSS 243

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+  CA+L  L  GK  HG+V+  G E    +++ALVDMYAKC  +  +  +F R+    
Sbjct: 244 VVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKD 303

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           V+++TS+IVG A++G    +L L++EM+   IKPN+VTFVG+L+ACSH+GLV  G +   
Sbjct: 304 VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFR 363

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           SM   Y I P  +HYTC++D+L R+G LDEA  L   I   PD     W +LLSA   H 
Sbjct: 364 SMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPT--WASLLSACMRHN 421

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            +++ V  ++++++   +  + Y+ LSN YA A  W +V  +R  M    + KEPG S +
Sbjct: 422 NLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSI 481

Query: 476 EIRDQTYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +    +  F+AG +      +E+ +LL++L+ +M++RGYV   T  V  D+E + +E+ +
Sbjct: 482 DFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPN-TSFVLYDIEQQEKEKQL 540

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSERLA+A+GL+    G  IRI+KNLR+C DCH+V K ISDIV+R+ +VRD  R+HHF
Sbjct: 541 FWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHF 600

Query: 595 RNGSCSCGDFW 605
           + G CSC DFW
Sbjct: 601 KEGKCSCNDFW 611


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 344/600 (57%), Gaps = 22/600 (3%)

Query: 10  IFTLAASSLTRQN-KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHL 68
           I  L + SLT+ N + +S     H I  + +C  L  L  + +  +K+ + +NT  +   
Sbjct: 5   ILQLTSFSLTKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKF 64

Query: 69  IN-CYVRLKKTQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           IN C     K  +  A QLFD++ +PN+V + ++  GY  +  P   +  F++ L     
Sbjct: 65  INFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCL----- 119

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
                     +  S +  L  GKQ+H      G   N+ V  +L++MY  C D+D +RRV
Sbjct: 120 ----------RLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRV 169

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD +    VV++ +II++ A+N + +EAL +FRE   +   +P    +  V+++CA LG 
Sbjct: 170 FDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQ-EIGLKPTDVTMLVVLSSCALLGS 228

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  G+  H  V + G +    V + L+DMYAKCGS++ +  VF  +       ++++IV 
Sbjct: 229 LDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVA 288

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G G  ++ + NEM    ++P+++TF+G+L+ACSH+GLV+EG ++   M  +YGI+P
Sbjct: 289 YATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVP 348

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             KHY C+VD+LGR GRLDEAYK    + + P   P+LW TLLSA   HG V++      
Sbjct: 349 SIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPT--PILWRTLLSACSTHGNVEMGKRVIE 406

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           ++ E +      YV  SN  A  G+W++V+ LR  M   G  K PGCS +E+ +  + F+
Sbjct: 407 RIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFF 466

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           AG  +    + +   L EL +++K  GYV   + + + D+EDE +E I+  HSE+LA+ F
Sbjct: 467 AGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITF 526

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GL++ P G TIR++KNLR+C DCH+  K IS I  R  ++RDV RFHHF++G CSCGD+W
Sbjct: 527 GLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 346/571 (60%), Gaps = 5/571 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNH-LINCYVR-LKKTQVARQLFDEMLEPNVV 94
           +++CK L     VH +ILK G   ++F  +  L  C +        A  +F ++ EP   
Sbjct: 39  VKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTF 98

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            + +++ GY+N    + A+ L+  ML   V P+ FT+  V+KAC+ LA +  G QIH H+
Sbjct: 99  DFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHV 158

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              G + ++ V +SL++MYGKC D++ +  +F  M  ++V SW++II AHA  A   E L
Sbjct: 159 FKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECL 218

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
            +F + + +   R  + +L +V++AC  LG    G+ AHG ++++  E N  V ++L+DM
Sbjct: 219 ALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDM 278

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCGS+     +F  ++  + ++Y+ +I G   +G GR +L +F+EM+  G++P+DVT+
Sbjct: 279 YVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTY 338

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           V VL ACSHSGLVDEG+   D M  +Y I P  +HY C+VD+ GR G L+EA++L +S+ 
Sbjct: 339 VSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMP 398

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
           +  +   +LW +LLSA ++H  + +   A+  L   +    + Y+ LSN YA A +WEN 
Sbjct: 399 IKAND--VLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENA 456

Query: 455 HSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYV 514
             +R++M   G+ + PG S VE++ + Y F + +  + +   +  ++ ++E +++  GY+
Sbjct: 457 AKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYM 516

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
              T  V +DV++E + E +  HS++LA+AF LI   +G  IRI++NLRMC DCH   KL
Sbjct: 517 -PDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKL 575

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +S I ER+  VRD NRFHHF++G+CSC D+W
Sbjct: 576 VSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 334/557 (59%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  LK+G + ++F    LI+ Y +  K + A  LF      ++ S+ ++M G+     
Sbjct: 421 VHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDN 480

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF  M       ++ TFA   KA   L  L  GKQIH  +    F Y+L V S 
Sbjct: 481 YREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISG 540

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++DMY KC ++  AR+VF+ +   + V+WT++I    +N +  +AL  + +       +P
Sbjct: 541 ILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGV-QP 599

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +++  A+++ AC+ L  L  GK  H  +++  C F+  V ++LVDMYAKCG++  +  +F
Sbjct: 600 DEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLF 659

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R++  SV  + +MIVG A++G    +L+ FNEM SRG+ P+ VTF+GVL ACSHSGL  
Sbjct: 660 RRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTS 719

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +  ++ DSM + YG+ P+ +HY+C+VD L R G + EA K+  S+    +    ++ TLL
Sbjct: 720 DAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF--EASATMYRTLL 777

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+ G  +     + +L   +   + AYV LSN YA A +WEN  S R+ MKR  + K
Sbjct: 778 NACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKK 837

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW++++++ + F AG+   E    + + +  + +++KE GYV   T    VD+E+E
Sbjct: 838 EPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYV-PDTEFALVDIEEE 896

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+A+GL+  P   T+R++KNLR+C DCH+  K IS++ +R+ V+RD 
Sbjct: 897 DKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDA 956

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHFR+G CSCGD+W
Sbjct: 957 NRFHHFRSGICSCGDYW 973



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 198/388 (51%), Gaps = 8/388 (2%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL     +H  +++ G+       N  IN YV+      AR++F +M E +++S+ ++++
Sbjct: 312 HLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVIS 371

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-LITGKQIHTHIETFGFQ 160
           G    G  + +L LF  +L + + P++FT  +V++ACS L +    G+Q+HT     G  
Sbjct: 372 GCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIV 431

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +  V ++L+D+Y K   ++ A  +F      ++ SW +++     +    EAL +F   
Sbjct: 432 LDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLF-SL 490

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            ++  ++ +Q   A+   A   L RL  GK  H VV++    ++  V S ++DMY KCG 
Sbjct: 491 MHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGE 550

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  + KVFN+I +P  V +T++I G  + G    +L  +++M   G++P++ TF  ++ A
Sbjct: 551 MKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKA 610

Query: 341 CSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           CS    +++G Q H + M  K     D    T +VDM  + G +++AY L + +      
Sbjct: 611 CSLLTALEQGKQIHANIM--KLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVA 668

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQL 427
              LW  ++     HG  + A+   N++
Sbjct: 669 ---LWNAMIVGLAQHGNAEEALNFFNEM 693



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 170/348 (48%), Gaps = 6/348 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A +LF    + +V  +   ++ Y+  G+   A+  F+ M+ + V  +  T+  ++   + 
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L  L  GKQIH  +  FG+   + V +S ++MY K   V+ ARR+F  M   +++SW ++
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR-LVSGKVAHGVVVRS 259
           I   A++     +L +F +   +S   P+Q  + SV+ AC+SL      G+  H   +++
Sbjct: 370 ISGCARSGLEECSLRLFIDL-LRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKA 428

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G   +  V++AL+D+Y+K G +  ++ +F+      + ++ +M+ G       R +L LF
Sbjct: 429 GIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLF 488

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
           + M  RG K + +TF     A      + +G Q + ++  K     D    + ++DM  +
Sbjct: 489 SLMHERGEKADQITFANAAKAAGCLVRLQQGKQ-IHAVVIKMRFHYDLFVISGILDMYLK 547

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            G +  A K+   I   P    + W T++S    +G  + A+   +Q+
Sbjct: 548 CGEMKSARKVFNQI---PSPDDVAWTTVISGCVENGEEEQALFTYHQM 592



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL--MGCRNVVSWTS 199
           +DLI GK+ H  I T G   +  V ++L+ MY KC  +  AR++FD+     R++V++ +
Sbjct: 27  SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNA 86

Query: 200 IIVAHAQNAQ------GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
           I+ A+A   +       HEA  +FR    QS     +H L+ +   C   G   + +   
Sbjct: 87  ILAAYAHTGELHDVEKTHEAFHIFRLLR-QSVMLTTRHTLSPLFKLCLLYGSPSASEALQ 145

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
           G  V+ G +++  VA ALV++YAK   +  +  +F+R+    VV +  M+    + G G 
Sbjct: 146 GYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGD 205

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
             L LF+     G++P+ V+   +L       + +  ++ + +   K  +  D    T
Sbjct: 206 EVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVT 263



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 36/297 (12%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYINMG 107
           H+ I+ SG   + +  N+LI  Y +      AR+LFD     + ++V+Y +++A Y + G
Sbjct: 36  HAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTG 95

Query: 108 Q------PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           +         A  +F+ +  +++     T + + K C +       + +  +    G Q+
Sbjct: 96  ELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQW 155

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V  +LV++Y K   +  AR +FD M  R+VV W  ++ A+ +   G E L +F  F 
Sbjct: 156 DVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAF- 214

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           ++S  RP+          C S+  ++ G     V  R   E   V A             
Sbjct: 215 HRSGLRPD----------CVSVRTILMGVGKKTVFER---ELEQVRA------------- 248

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
            Y+ K+F    +  V  +   +    + G G  ++D F +MI   +  + +T++ +L
Sbjct: 249 -YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVIL 304


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/575 (38%), Positives = 337/575 (58%), Gaps = 11/575 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            ++   +C  L+    V  E+      S     N ++N Y  +   + AR+LFDEM E +
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCS----WNVMVNGYAEVGLLEEARKLFDEMTEKD 181

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNEFTFATVIKACSMLADLITGKQI 150
             S+T+++ GY+   QP+ AL+L+  M  + N   PN FT +  + A + +  +  GK+I
Sbjct: 182 SYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSR-PNIFTVSIAVAAAAAVKCIRRGKEI 240

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H HI   G   + V+ SSL+DMYGKC  +D AR +FD +  ++VVSWTS+I  + ++++ 
Sbjct: 241 HGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRW 300

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            E   +F E    S +RPN++  A V+NACA L     GK  HG + R G +     +S+
Sbjct: 301 REGFSLFSEL-VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           LVDMY KCG++  +  V +    P +V++TS+I G A+ G    +L  F+ ++  G KP+
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            VTFV VL AC+H+GLV++G++   S+  K+ +   + HYTC+VD+L R+GR ++   + 
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
             + + P     LW ++L     +G +D+A EA+ +L +   +    YVT++N YA AG+
Sbjct: 480 SEMPMKP--SKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGK 537

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           WE    +R  M+  G+ K PG SW EI+ + + F A +      ++++  LREL +KMKE
Sbjct: 538 WEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKE 597

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GYV   T LV  DVEDE +EE +  HSE+LA+AF ++S  +G  I++ KNLR C DCH 
Sbjct: 598 EGYVPA-TSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHG 656

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K IS+I +R   VRD  RFH F NG CSCGD+W
Sbjct: 657 AIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 190/411 (46%), Gaps = 70/411 (17%)

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           ++LG    P   T+  +I+ CS    L  GK++H HI T GF   +V+ + L+ MY KC 
Sbjct: 75  QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN-------------YQS 224
            +  AR+VFD M  R++ SW  ++  +A+     EA ++F E               Y  
Sbjct: 135 SLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVK 194

Query: 225 RDRPNQ-----HMLASVINACASLGR-------------LVSGKVAHGVVVRSGCEFNDV 266
           +D+P +      ++  V N+  ++               +  GK  HG +VR+G + ++V
Sbjct: 195 KDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEV 254

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           + S+L+DMY KCG ++ +  +F++I    VV++TSMI    K    R    LF+E++   
Sbjct: 255 LWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSC 314

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQ------------------HLDSMYRKYGIIPDAK 368
            +PN+ TF GVL+AC+     + G Q                   L  MY K G I  AK
Sbjct: 315 ERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAK 374

Query: 369 H------------YTCVVDMLGRTGRLDEAYK----LAKSIQVDPDGGPLLWGTLLSASR 412
           H            +T ++    + G+ DEA K    L KS    PD    +   +LSA  
Sbjct: 375 HVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKS-GTKPDHVTFV--NVLSACT 431

Query: 413 LHGRVDIAVEASNQLIESNQ--QVANAYVTLSNTYALAGEWENVHSLRSEM 461
             G V+  +E    + E ++    ++ Y  L +  A +G +E + S+ SEM
Sbjct: 432 HAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEM 482


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 339/559 (60%), Gaps = 8/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K     ++F    LI+ Y +    Q AR +FD M   +V+ + S+++GY N G 
Sbjct: 311 LHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGY 370

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF  M    +  N+ T +T++K+ +        +Q+HT     G+QY+  V +S
Sbjct: 371 DIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANS 430

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-R 227
           L+D YGKC  ++ A +VF++    ++V++TS+I A++Q   G EAL+M+     Q RD +
Sbjct: 431 LLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMY--LRMQDRDIK 488

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+  + +S+ NACA+L     GK  H  V++ G   +    ++LV+MYAKCGS++ +  +
Sbjct: 489 PDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCI 548

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN IS   +V++++MI G A++G GR +L LF +M+  GI PN +T V VL AC+H+GLV
Sbjct: 549 FNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLV 608

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            E  +    M + +GI P  +HY C+VD+LGR GRLDEA  L K +         +WG L
Sbjct: 609 TEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAA--VWGAL 666

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A+R+H  +++   A+  L+    + +  ++ L+N YA  G W+NV  +R  MK + + 
Sbjct: 667 LGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVK 726

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG-KTGLVFVDVE 526
           KEPG SW+E++D+ Y F  G+    R  E+   L +L  ++   GYV   +T L   DVE
Sbjct: 727 KEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDL--HDVE 784

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
              +E+++  HSE+LA+AFGLI+ P G  IR+ KNLR+C DCH  FK IS +  R+ +VR
Sbjct: 785 QIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVR 844

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D+NRFHHFR+GSCSCGD+W
Sbjct: 845 DINRFHHFRDGSCSCGDYW 863



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 205/385 (53%), Gaps = 11/385 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K G+ S+ F+ N L++ Y +    + A  +F E+ +P++VS+ +++AG +   +
Sbjct: 210 VHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEK 269

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             +AL L  KM    V P+ FT ++ +KAC+ +  +  G+Q+H+ +     + +  V   
Sbjct: 270 NDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVG 329

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  +  AR VFDLM  ++V+ W SII  ++      EA+ +F    Y+     
Sbjct: 330 LIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNM-YKEGLEF 388

Query: 229 NQHMLASVINACASLGRLVSG--KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           NQ  L++++ + A  G   +G  +  H + ++SG +++  VA++L+D Y KC  +  + K
Sbjct: 389 NQTTLSTILKSTA--GSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF       +V YTSMI   ++YGLG  +L ++  M  R IKP+   F  + +AC++   
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSA 506

Query: 347 VDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            ++G Q H+  +  K G++ D      +V+M  + G +D+A  +   I      G + W 
Sbjct: 507 YEQGKQIHVHVL--KCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWR---GIVSWS 561

Query: 406 TLLSASRLHGRVDIAVEASNQLIES 430
            ++     HG    A++   Q++++
Sbjct: 562 AMIGGLAQHGHGRKALQLFYQMLKN 586



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 182/387 (47%), Gaps = 45/387 (11%)

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALL-------------- 114
           +N Y + +  +VAR+L  +  EP++VS+++L++GY+  G+ + ALL              
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 115 --------------------------LFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
                                     L  +M+   + PNEF+ +TV+ AC+ L D   G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           ++H ++   G+  +    ++L+DMY K    + A  VF  +   ++VSW ++I     + 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +   AL++  +     R  P+   L+S + ACA++G +  G+  H  +++   E +  V 
Sbjct: 269 KNDLALKLLGKMG-SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
             L+DMY+KCG +  +  VF+ +    V+ + S+I G +  G    ++ LF  M   G++
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE 387

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            N  T   +L + + S   +   + + ++  K G   D      ++D  G+   L++A  
Sbjct: 388 FNQTTLSTILKSTAGSQ-ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDA-- 444

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHG 415
            AK  +V P    + + ++++A   +G
Sbjct: 445 -AKVFEVCPAEDLVAYTSMITAYSQYG 470



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 48/214 (22%)

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL--------------- 316
           V++Y+KC     + K+    S P +V+++++I G  + G G  +L               
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 317 -------------------------DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
                                     L  EMIS GI PN+ +   VL+AC  +GL DE  
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNAC--AGLEDENY 206

Query: 352 -QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
              +     K G   D      ++DM  ++G  + A  +   I   P    + W  +++ 
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI---PKPDIVSWNAVIAG 263

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
             LH + D+A++   ++   + +VA +  TLS+ 
Sbjct: 264 CVLHEKNDLALKLLGKM--GSYRVAPSMFTLSSA 295


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 340/589 (57%), Gaps = 36/589 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVR----------LKKTQV------------------ 80
           +H  +LK G  S+ F    LIN Y +            K+ +                  
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 81  ---ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              AR+LF+E+   + VS+ +++AGY   G+ + AL  FQ+M    V PNE T  TV+ A
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+    L  G  + + IE  G   NL + ++L+DMY KC D+D AR +F+ +  ++++SW
Sbjct: 274 CAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISW 333

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
             +I  ++      EAL +FR+   QS   PN     S++ ACA LG L  GK  H  + 
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQ-QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392

Query: 258 RSGCEF-NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +      N  + ++L+DMYAKCG++  + +VF  +   S+ ++ +MI G A +G    +L
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           +LF +M   G +P+D+TFVGVL ACSH+GLV+ G Q   SM   Y I P  +HY C++D+
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR G  DEA  L K++++ PDG   +WG+LL A R+HG V++   A+  L E   +   
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGA--IWGSLLGACRVHGNVELGEFAAKHLFELEPENPG 570

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           AYV LSN YA AG W++V  +R+++   G+ K PGCS +E+    + F  G+ + E+  +
Sbjct: 571 AYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQD 630

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +  +L E+++ +++ G+V   T  V  D+++E +E  +  HSE+LA+AFGLIS     TI
Sbjct: 631 IYKMLDEIDQLLEKAGHV-PDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTI 689

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI+KNLR+C +CH   KLIS I  R+ + RD NRFHHF++GSCSC D+W
Sbjct: 690 RIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 210/424 (49%), Gaps = 37/424 (8%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVR-LKKTQVARQLFDEMLEPNVV 94
           L  CK   +L  +HS+I+K+G  +  F L+ LI  C +        A  LF+ + +PN  
Sbjct: 39  LSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQF 98

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            + +++ G      P  A+  + +ML   V PN +TF  ++K+C+ +     GKQIH H+
Sbjct: 99  IWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHV 158

Query: 155 ETFGFQYNLVVCSSLVDMYGKCND-------------------------------VDGAR 183
              G + +  V +SL++MY +  +                               +D AR
Sbjct: 159 LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDAR 218

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           R+F+ +  R+ VSW ++I  +AQ+ +  EAL  F+E   ++   PN+  + +V++ACA  
Sbjct: 219 RLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK-RANVAPNESTMVTVLSACAQS 277

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           G L  G      +   G   N  + +AL+DMY+KCG ++ +  +F  I    ++++  MI
Sbjct: 278 GSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMI 337

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
            G +     + +L LF +M    ++PNDVTFV +L AC++ G +D G      + +K+  
Sbjct: 338 GGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLG 397

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
           + +   +T ++DM  + G ++ A ++   ++    G    W  ++S   +HG  ++A+E 
Sbjct: 398 LTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS---WNAMISGLAMHGHANMALEL 454

Query: 424 SNQL 427
             Q+
Sbjct: 455 FRQM 458


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 348/588 (59%), Gaps = 5/588 (0%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           +  + KR    T    +  + +   L    S+H   +++GF S       L++ Y +   
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGS 326

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              AR +FD M    VVS+ S++ GY+  G P  A+ +FQKM+   V     T    + A
Sbjct: 327 VGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHA 386

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ L D+  G+ +H  ++      ++ V +SL+ MY KC  VD A  +F+ +  + +VSW
Sbjct: 387 CADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSW 446

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
            ++I+ +AQN + +EA++ F +   Q+  +P+   + SVI A A L  L   K  HG+V+
Sbjct: 447 NAMILGYAQNGRINEAIDYFCKMQLQNI-KPDSFTMVSVIPALAELSVLPQAKWIHGLVI 505

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           R+  + N  VA+ALVDMYAKCG+V+ + K+F+ +    V T+ +MI G   +GLG+ +L+
Sbjct: 506 RTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALE 565

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF +M    IKPN+VTF+ VL ACSHSGLV+EG Q+  SM + YG+ P   HY  +VD+L
Sbjct: 566 LFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLL 625

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR  RL+EA+   + + ++P     ++G +L A R+H  V++  +A+N++ + +      
Sbjct: 626 GRANRLNEAWDFIQKMPIEP--AISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGY 683

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           +V L+N YA A  W+ V  +R+ M++ GI K PG S VE++++ + FY+G     +  ++
Sbjct: 684 HVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKI 743

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            + L  L  ++K  GY+     +   DVED  +E+++  HSE+LA+AF L++   G TI 
Sbjct: 744 YAFLETLGNRIKAAGYMPDTNSV--HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIH 801

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           + KNLR+C DCH+  K IS + +R+ +VRD+ RFHHF++G+CSCGD+W
Sbjct: 802 LRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 201/386 (52%), Gaps = 5/386 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  +  L      I+K+G  S       L++ + +      A ++F  + +     Y
Sbjct: 84  LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELY 143

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY        A+  F +M  + V P  + F  ++K C   ADL  GK+IH  +  
Sbjct: 144 HTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIV 203

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  N+   + +V+MY KC  V+ A ++FD M  R++V W +II  +AQN  G  ALE+
Sbjct: 204 NGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALEL 263

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
                 + + RP+   + S++ A A +G L  G+  HG  +R+G E    V++ALVDMY+
Sbjct: 264 VLRMQEEGK-RPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYS 322

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGSV  +  +F+R++  +VV++ SMI G  + G    ++++F +M+   ++  +VT +G
Sbjct: 323 KCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMG 382

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
            LHAC+  G V++G + +  +  +  +  D      ++ M  +  R+D A ++ +++Q  
Sbjct: 383 ALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ-- 439

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
                + W  ++     +GR++ A++
Sbjct: 440 -HKTLVSWNAMILGYAQNGRINEAID 464



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 202/388 (52%), Gaps = 9/388 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++ +GF SN F +  ++N Y + +  + A ++FD M E ++V + ++++GY   G 
Sbjct: 197 IHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGF 256

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL L  +M      P+  T  +++ A + +  L  G+ IH +    GF+  + V ++
Sbjct: 257 GKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTA 316

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  V  AR +FD M  + VVSW S+I  + QN     A+E+F++   +  +  
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMT 376

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N  ++ + ++ACA LG +  G+  H ++ +     +  V ++L+ MY+KC  V+ + ++F
Sbjct: 377 NVTVMGA-LHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIF 435

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + + ++V++ +MI+G A+ G    ++D F +M  + IKP+  T V V+ A +   ++ 
Sbjct: 436 ENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLP 495

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +  + +  +  +  +  +    T +VDM  + G +  A KL   +    +     W  ++
Sbjct: 496 QA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMD---ERHVTTWNAMI 551

Query: 409 SASRLHGRVDIAVE----ASNQLIESNQ 432
                HG    A+E       ++I+ N+
Sbjct: 552 DGYGTHGLGKAALELFEKMKKEVIKPNE 579


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/601 (35%), Positives = 344/601 (57%), Gaps = 24/601 (3%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           +++ + + HFI  LQ CKH   +  ++++I+++    + F +  L+     L     A +
Sbjct: 26  KNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASK 85

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F     PNV  YT+L+ G +        + L+ +M+ + + P+ +   +V+KAC     
Sbjct: 86  IFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLA 145

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-------------- 189
           L  G+++H+ +   G   N  +   L+++YGKC   + ARRVFD M              
Sbjct: 146 LKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINY 205

Query: 190 ----GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLG 244
               G ++ V WT++I    +N + + ALE+FR  N Q  D  PN+  +  V++AC+ LG
Sbjct: 206 YFDHGIKDTVCWTAMIDGLVRNGESNRALEVFR--NMQREDVMPNEVTIVCVLSACSELG 263

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G+     + +   E N  V  AL++MY++CG ++ + +VF ++   +V+TY SMI+
Sbjct: 264 ALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIM 323

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A +G    +++LF  +I +G  P+ VTFVGVL+ACSH GL + G +   SM + YGI 
Sbjct: 324 GFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIE 383

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P  +HY C+VD+LGR GRL+EAY   + ++V PD   ++ G LLSA ++HG +++A   +
Sbjct: 384 PQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDH--VMLGALLSACKIHGNLELAERVA 441

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
             L+      +  Y+ LSN Y+ +G+W+    +R+ M+  GI KEPGCS +E+ ++ + F
Sbjct: 442 KSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEF 501

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
             G+    +  ++   L EL + ++  GY    T +V  D+E   +E  + +HSERLA+ 
Sbjct: 502 LLGDLRHPQKEKIYKKLEELNQILRLEGYTPA-TEVVLHDIEKSEKEWALAIHSERLAIC 560

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           +GLIS     T+R++KNLR+C DCH   KLIS+I  R  VVRD NRFHHF NG CSCGD+
Sbjct: 561 YGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDY 620

Query: 605 W 605
           W
Sbjct: 621 W 621


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 341/569 (59%), Gaps = 28/569 (4%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN----VVSYTSLMAGYINMGQPQIALL 114
             +  + N ++  Y +    + A +LF  M + N    VV++T+++AGY   G    AL 
Sbjct: 335 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 394

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI---------ETFGFQ-YNLV 164
           LF++M+ +   PN  T  +V+ AC+ L     G +IH +            FG +  +L+
Sbjct: 395 LFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLM 454

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           V ++L+DMY KC     AR +FD +    RNVV+WT +I  HAQ    ++AL++F E   
Sbjct: 455 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS 514

Query: 223 QSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVR-----SGCEFNDVVASALVDMYA 276
           +     PN + ++ ++ ACA L  +  GK  H  V+R     S   F   VA+ L+DMY+
Sbjct: 515 EPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYF---VANCLIDMYS 571

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG V+ +  VF+ +S  S +++TSM+ G   +G G  +LD+F++M   G  P+D+TF+ 
Sbjct: 572 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 631

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL+ACSH G+VD+G+ + DSM   YG+ P A+HY C +D+L R+GRLD+A++  K + ++
Sbjct: 632 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPME 691

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           P    ++W  LLSA R+H  V++A  A N+L+E N +   +Y  +SN YA AG W++V  
Sbjct: 692 PTA--VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 749

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG 516
           +R  MK++GI K PGCSWV+ +  T +F+ G+       ++ +LL  L  ++K  GYV  
Sbjct: 750 IRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYV-P 808

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
           +T     DV++E +  ++  HSE+LALA+GL++   G  IRI KNLR+C DCH  F  IS
Sbjct: 809 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 868

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IV+ + VVRD +RFHHF+NGSCSCG +W
Sbjct: 869 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 215/469 (45%), Gaps = 63/469 (13%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R   R    T  H ++   E       ++ H  I  +GF SN F  N L+  Y R   
Sbjct: 153 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 212

Query: 78  TQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNE---- 128
            + A  +FDE+ +    +V+S+ S+++ ++       AL LF KM  + +    NE    
Sbjct: 213 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 272

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            +   ++ AC  L  +   K++H +    G   ++ V ++L+D Y KC  ++ A +VF++
Sbjct: 273 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 332

Query: 189 MGCRNVVS-----------------------------------WTSIIVAHAQNAQGHEA 213
           M  ++VVS                                   WT++I  ++Q    HEA
Sbjct: 333 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 392

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---------GCEFN 264
           L +FR+  + S   PN   + SV++ACASLG    G   H   +++         G E  
Sbjct: 393 LNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 451

Query: 265 DV-VASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           D+ V +AL+DMY+KC S   +  +F+ I     +VVT+T MI G A+YG    +L LF E
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 511

Query: 322 MISR--GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT-CVVDMLG 378
           MIS   G+ PN  T   +L AC+H   +  G Q    + R +     A     C++DM  
Sbjct: 512 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYS 571

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           + G +D A  +  S+        + W ++++   +HGR   A++  +++
Sbjct: 572 KCGDVDTARHVFDSMS---QKSAISWTSMMTGYGMHGRGSEALDIFDKM 617



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 214/488 (43%), Gaps = 86/488 (17%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSG--------------------FLSNTFTLNHLI 69
            +HF   L+ECK   ++  +H +I+ SG                    F+S       ++
Sbjct: 44  PSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVV 103

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
             Y+    T  A  + + +     V +  L+  +I  G+   A+ +  +ML     P+ F
Sbjct: 104 ASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHF 163

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T   V+KAC  L     G   H  I   GF+ N+ +C++LV MY +C  ++ A  +FD +
Sbjct: 164 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 223

Query: 190 ---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-----LASVINACA 241
              G  +V+SW SI+ AH +++    AL++F +      ++P         + +++ AC 
Sbjct: 224 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 283

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFN----------- 289
           SL  +   K  HG  +R+G  F DV V +AL+D YAKCG +  + KVFN           
Sbjct: 284 SLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 342

Query: 290 ----------------------RISN-P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
                                 R  N P  VVT+T++I G ++ G    +L+LF +MI  
Sbjct: 343 AMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFS 402

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQ-----------HLDSMYRKYGIIPDAKHYTCVV 374
           G  PN VT + VL AC+  G   +G +            LD+ +   G   D   Y  ++
Sbjct: 403 GSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG--GEDEDLMVYNALI 460

Query: 375 DMLGRTGRLDEAYKLAKSIQVD---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           DM  +      ++K A+SI  D    +   + W  ++     +G  + A++   ++I   
Sbjct: 461 DMYSKC----RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 432 QQVA-NAY 438
             VA NAY
Sbjct: 517 YGVAPNAY 524



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNT--FTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           L  C HL ++     +H+ +L+     ++  F  N LI+ Y +      AR +FD M + 
Sbjct: 530 LMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK 589

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           + +S+TS+M GY   G+   AL +F KM      P++ TF  V+ ACS    +  G    
Sbjct: 590 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGL--- 646

Query: 152 THIETFGFQYNLV------VCSSLVDMYGKCNDVDGA-RRVFDLMGCRNVVSWTSIIVA- 203
           ++ ++    Y L        C+  +D+  +   +D A R V D+      V W +++ A 
Sbjct: 647 SYFDSMSADYGLTPRAEHYACA--IDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSAC 704

Query: 204 --HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH-----GVV 256
             H+       AL    E N ++      + L S I A A   + V+ ++ H     G+ 
Sbjct: 705 RVHSNVELAEHALNKLVEMNAEND---GSYTLISNIYATAGRWKDVA-RIRHLMKKSGIK 760

Query: 257 VRSGCEF 263
            R GC +
Sbjct: 761 KRPGCSW 767


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/560 (38%), Positives = 338/560 (60%), Gaps = 12/560 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS +++SG  S+ F    L++ Y +    + +R++F+ ML  NV+S+T+L++GY+   Q
Sbjct: 270 LHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQ 329

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            Q A+ LF  ML   V PN FTF++V+KAC+ L D   GKQ+H      G      V +S
Sbjct: 330 EQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNS 389

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR- 227
           L++MY +   ++ AR+ F+++  +N++S+ +   A+A+      AL+    FN++     
Sbjct: 390 LINMYARSGTMECARKAFNILFEKNLISYNTAADANAK------ALDSDESFNHEVEHTG 443

Query: 228 --PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              +    A +++  A +G +V G+  H ++V+SG   N  + +AL+ MY+KCG+   + 
Sbjct: 444 VGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAAL 503

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VFN +   +V+T+TS+I G AK+G    +L+LF EM+  G+KPN+VT++ VL ACSH G
Sbjct: 504 QVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVG 563

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+DE  +H +SM+  + I P  +HY C+VD+LGR+G L EA +   S+  D D   L+W 
Sbjct: 564 LIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADA--LVWR 621

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           T L + R+H    +   A+ +++E        Y+ LSN YA  G W++V +LR  MK+  
Sbjct: 622 TFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKK 681

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + KE G SW+E+ +Q + F+ G+    +  ++   L EL  K+K  GY+   T  V  DV
Sbjct: 682 LIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPN-TDFVLHDV 740

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           EDE +E+ +  HSE++A+A+ LIS PK   IR+ KNLR+C DCH   K IS +  R+ VV
Sbjct: 741 EDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVV 800

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHH ++G CSC D+W
Sbjct: 801 RDANRFHHIKDGKCSCNDYW 820



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 11/348 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYTSLMAGYINM 106
           +H +++ SG   ++  LN LI  Y +    + A  +F  M   + ++VS++++++ + N 
Sbjct: 61  LHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANN 120

Query: 107 GQPQIALLLFQKMLG---NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG-FQYN 162
                ALL F  ML    N+++PNE+ F  ++++CS      TG  I   +   G F  +
Sbjct: 121 SMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSH 180

Query: 163 LVVCSSLVDMYGKCN-DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + V  +L+DM+ K   D+  AR VFD M  +N+V+WT +I  ++Q     +A+++F    
Sbjct: 181 VCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRL- 239

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             S   P++  L S+++AC  L     GK  H  V+RSG   +  V   LVDMYAK  +V
Sbjct: 240 LVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAV 299

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             S K+FN + + +V+++T++I G  +    + ++ LF  M+   + PN  TF  VL AC
Sbjct: 300 ENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKAC 359

Query: 342 SHSGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
             + L D GI + L     K G+         +++M  R+G ++ A K
Sbjct: 360 --ASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARK 405



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 7/266 (2%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--C 191
           ++KAC    +L  GK +H  +   G   + V+ +SL+ +Y KC D + A  +F  MG   
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSG 249
           R++VSW++II   A N+    AL  F      SR+   PN++   +++ +C++     +G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 250 KVAHGVVVRSGCEFNDV-VASALVDMYAKCG-SVNYSDKVFNRISNPSVVTYTSMIVGAA 307
                 ++++G   + V V  AL+DM+ K G  +  +  VF+++ + ++VT+T MI   +
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           + GL   ++DLF  ++     P+  T   +L AC        G Q L S   + G+  D 
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGLASDV 283

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSI 393
                +VDM  ++  ++ + K+  ++
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTM 309


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/637 (36%), Positives = 356/637 (55%), Gaps = 59/637 (9%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           N+RS   +  + +      K +     VH   +++G   + F  N LI+ Y +    + A
Sbjct: 260 NERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENA 319

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM------LGNLVW---------- 125
            ++F+ M   +VVS+ +++AGY   G  + A  LF+ M      L  + W          
Sbjct: 320 VKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQR 379

Query: 126 -------------------PNEFTFATVIKACSMLADLITGKQIHTHI---------ETF 157
                              PN  T  +V+ AC+ L     G +IH +            F
Sbjct: 380 GCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDF 439

Query: 158 GFQ-YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEAL 214
           G +  +L+V ++L+DMY KC     AR +FD +    RNVV+WT +I  HAQ    ++AL
Sbjct: 440 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 499

Query: 215 EMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVR-----SGCEFNDVVA 268
           ++F E   +     PN + ++ ++ ACA L  +  GK  H  V+R     S   F   VA
Sbjct: 500 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYF---VA 556

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + L+DMY+KCG V+ +  VF+ +S  S +++TSM+ G   +G G  +LD+F++M   G  
Sbjct: 557 NCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 616

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+D+TF+ VL+ACSH G+VD+G+ + DSM   YG+ P A+HY C +D+L R+GRLD+A++
Sbjct: 617 PDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWR 676

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             K + ++P    ++W  LLSA R+H  V++A  A N+L+E N +   +Y  +SN YA A
Sbjct: 677 TVKDMPMEPTA--VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 734

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W++V  +R  MK++GI K PGCSWV+ +  T +F+ G+       ++ +LL  L  ++
Sbjct: 735 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRI 794

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  GYV  +T     DV++E +  ++  HSE+LALA+GL++   G  IRI KNLR+C DC
Sbjct: 795 KAMGYV-PETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDC 853

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H  F  IS IV+ + VVRD +RFHHF+NGSCSCG +W
Sbjct: 854 HSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 215/469 (45%), Gaps = 63/469 (13%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R   R    T  H ++   E       ++ H  I  +GF SN F  N L+  Y R   
Sbjct: 146 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 205

Query: 78  TQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNE---- 128
            + A  +FDE+ +    +V+S+ S+++ ++       AL LF KM  + +    NE    
Sbjct: 206 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 265

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            +   ++ AC  L  +   K++H +    G   ++ V ++L+D Y KC  ++ A +VF++
Sbjct: 266 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 325

Query: 189 MGCRNVVS-----------------------------------WTSIIVAHAQNAQGHEA 213
           M  ++VVS                                   WT++I  ++Q    HEA
Sbjct: 326 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 385

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---------GCEFN 264
           L +FR+  + S   PN   + SV++ACASLG    G   H   +++         G E  
Sbjct: 386 LNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 444

Query: 265 DV-VASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           D+ V +AL+DMY+KC S   +  +F+ I     +VVT+T MI G A+YG    +L LF E
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 504

Query: 322 MISR--GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT-CVVDMLG 378
           MIS   G+ PN  T   +L AC+H   +  G Q    + R +     A     C++DM  
Sbjct: 505 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYS 564

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           + G +D A  +  S+        + W ++++   +HGR   A++  +++
Sbjct: 565 KCGDVDTARHVFDSMS---QKSAISWTSMMTGYGMHGRGSEALDIFDKM 610



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 214/488 (43%), Gaps = 86/488 (17%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSG--------------------FLSNTFTLNHLI 69
            +HF   L+ECK   ++  +H +I+ SG                    F+S       ++
Sbjct: 37  PSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVV 96

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
             Y+    T  A  + + +     V +  L+  +I  G+   A+ +  +ML     P+ F
Sbjct: 97  ASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHF 156

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T   V+KAC  L     G   H  I   GF+ N+ +C++LV MY +C  ++ A  +FD +
Sbjct: 157 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 216

Query: 190 ---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH-----MLASVINACA 241
              G  +V+SW SI+ AH +++    AL++F +      ++P         + +++ AC 
Sbjct: 217 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 276

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFN----------- 289
           SL  +   K  HG  +R+G  F DV V +AL+D YAKCG +  + KVFN           
Sbjct: 277 SLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 335

Query: 290 ----------------------RISN-P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
                                 R  N P  VVT+T++I G ++ G    +L+LF +MI  
Sbjct: 336 AMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFS 395

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQ-----------HLDSMYRKYGIIPDAKHYTCVV 374
           G  PN VT + VL AC+  G   +G +            LD+ +   G   D   Y  ++
Sbjct: 396 GSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG--GEDEDLMVYNALI 453

Query: 375 DMLGRTGRLDEAYKLAKSIQVD---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           DM  +      ++K A+SI  D    +   + W  ++     +G  + A++   ++I   
Sbjct: 454 DMYSKC----RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 432 QQVA-NAY 438
             VA NAY
Sbjct: 510 YGVAPNAY 517


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 325/545 (59%), Gaps = 4/545 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N    N +I   +R K  + AR+LF+ M + + +++T+++ G+   G    AL  F++M 
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMR 264

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              +  +++TF +++ AC  L+ L  GKQIH +I    +  N+ V S+LVDMY KC  + 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIK 324

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A   F  M C+N++SWT++IV + QN    EA+ +F E      D P+   L SVI++C
Sbjct: 325 PAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID-PDDFTLGSVISSC 383

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A+L  L  G   H + + SG      V++ALV +Y KCGS+  + ++F+ +     V++T
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWT 443

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +++ G A++G  + ++DLF +M+++ +KP+ VTF+GVL ACS +G V++G  +  SM + 
Sbjct: 444 ALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKD 503

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +GI+P   HYTC++D+  R+GRL EA +  K + + PD   + WGTLLSA RL G ++I 
Sbjct: 504 HGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDA--IGWGTLLSACRLRGDMEIG 561

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+  L+E + Q   +YV L + +A  G W  V  LR  M+   + KEPGCSW++ +++
Sbjct: 562 QWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNK 621

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F A +        +   L  L  KM E GY    +  V  DV D  +  +V  HSE+
Sbjct: 622 VHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSS-VLHDVADTDKVHMVSHHSEK 680

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AFGL+ +P  + IRI+KNLR+C DCH+  KLIS I  RD +VRD  RFH F NG CS
Sbjct: 681 LAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCS 740

Query: 601 CGDFW 605
           CGDFW
Sbjct: 741 CGDFW 745



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 178/366 (48%), Gaps = 43/366 (11%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N FT N L++     +       LF  M + + VSY +++AG+   G    A+ L+  +L
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 121 --GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
             G+ V P+  T + ++ A S L D   G+Q H  I   GF  N  V S LV MY K   
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 179 VDGARRVFDLMGCRNVV-------------------------------SWTSIIVAHAQN 207
           +  A+RVFD M  +NVV                               +WT+++    QN
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               +AL  FR   +Q     +Q+   S++ AC +L  L  GK  H  ++R+  + N  V
Sbjct: 251 GLESQALNFFRRMRFQGI-AIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFV 309

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            SALVDMY+KC S+  ++  F R+S  +++++T++IVG  + G    ++ +F+EM   GI
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRL 383
            P+D T   V+ +C++   ++EG Q     +    ++    HY  V    V + G+ G +
Sbjct: 370 DPDDFTLGSVISSCANLASLEEGAQ-----FHCLALVSGLMHYITVSNALVTLYGKCGSI 424

Query: 384 DEAYKL 389
           ++A++L
Sbjct: 425 EDAHRL 430



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 144/273 (52%), Gaps = 8/273 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L +L     +H+ I+++ +  N F  + L++ Y + +  + A   F  M   N+
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+T+L+ GY   G  + A+ +F +M  + + P++FT  +VI +C+ LA L  G Q H  
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCL 398

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G  + + V ++LV +YGKC  ++ A R+FD M   + VSWT+++  +AQ  +  E 
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKET 458

Query: 214 LEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASAL 271
           +++F +    ++D +P+      V++AC+  G +  G    H +    G    D   + +
Sbjct: 459 IDLFEKM--LAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCM 516

Query: 272 VDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
           +D+Y++ G +  +++   ++  +P  + + +++
Sbjct: 517 IDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 167/421 (39%), Gaps = 87/421 (20%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF- 220
           NL   ++L+        +D    +F  M  R+ VS+ ++I   +       A+ ++    
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
              S  RP++  +++++ A ++LG    G+  H  ++R G   N  V S LV MYAK G 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 281 VNYSDKVFNRISNPSVV-------------------------------TYTSMIVGAAKY 309
           +  + +VF+ +   +VV                               T+T+M+ G  + 
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ--------HLD------ 355
           GL   +L+ F  M  +GI  +  TF  +L AC     +++G Q        H D      
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310

Query: 356 ----SMYRKYGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQ---VD 396
                MY K   I  A+             +T ++   G+ G  +EA ++   +Q   +D
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ----VANAYVTLSNTYALAGEWE 452
           PD   L  G+++S+      ++   +     + S       V+NA VTL   Y   G  E
Sbjct: 371 PDDFTL--GSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL---YGKCGSIE 425

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE-LERKMKER 511
           + H L  EM     H +   SW        A   G A F R  E + L  + L + +K  
Sbjct: 426 DAHRLFDEML---FHDQ--VSWT-------ALVTGYAQFGRAKETIDLFEKMLAKDVKPD 473

Query: 512 G 512
           G
Sbjct: 474 G 474


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 337/589 (57%), Gaps = 35/589 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH ++L+ GF +  F  + L++ Y ++   + AR++F EM    VV Y +L+ G +   
Sbjct: 167 SVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCK 226

Query: 108 QPQIALLLFQKMLG--NLVWP-----------------------------NEFTFATVIK 136
             + A  LFQ M+   ++ W                              +++TF +++ 
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILT 286

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC  LA    GKQIH +I    ++ N+ V S+LVDMY KC  +  A  VF  M CRN++S
Sbjct: 287 ACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WT++IV + QNA   EA+  F E       +P+   L SVI++CA+L  L  G   H + 
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEMQMDGI-KPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           + SG      V++ALV +Y KCGS+  + ++F+ +S    V++T+++ G A++G  + ++
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           DLF +M+  G+KP+ VTF+GVL ACS +GLV++G  + DSM + + I+P   HYTC++D+
Sbjct: 466 DLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDL 525

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             R+GR  EA +  K +   PD     W TLLS+ RL G ++I   A+  L+E++ Q   
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDA--FGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +YV L + +A  G+W  V  LR  M+   + KEPGCSW++ +++ + F A +      S 
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSR 643

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +   L  L  KM E GY    +  V  DV D  +  ++  HSE+LA+AFGLI +P+ + I
Sbjct: 644 IYEKLEWLNSKMAEEGYKPDVSS-VLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPI 702

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI+KNLR+C DCH+  K IS I  RD +VRD  RFH F +G+CSCGDFW
Sbjct: 703 RIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 195/411 (47%), Gaps = 76/411 (18%)

Query: 48  SVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV------------ 93
           +VH  ILK+ FL    TF LNHL+  Y +  +   AR++FDEM +PN+            
Sbjct: 33  AVHCLILKT-FLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAH 91

Query: 94  -------------------VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFAT 133
                              VSY +L+ G+ + G P  ++ L++ +L    V P   T + 
Sbjct: 92  SRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSA 151

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK------------------ 175
           +I   S L+D   G  +H  +   GF     V S LVDMY K                  
Sbjct: 152 MIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT 211

Query: 176 -------------CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                        C  ++ A+ +F LM  R+ ++WT+++    QN    EAL++FR    
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +     +Q+   S++ AC +L     GK  H  + R+  E N  V SALVDMY+KC S+ 
Sbjct: 272 EGVG-IDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIR 330

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++ VF R++  +++++T+MIVG  +      ++  F+EM   GIKP+D T   V+ +C+
Sbjct: 331 LAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390

Query: 343 HSGLVDEGIQH----LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +   ++EG Q     L S   +Y  + +A     +V + G+ G +++A++L
Sbjct: 391 NLASLEEGAQFHCLALVSGLMRYITVSNA-----LVTLYGKCGSIEDAHRL 436



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  C +L SL   A  H   L SG +      N L+  Y +    + A +LFDEM   + 
Sbjct: 386 ISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           VS+T+L+ GY   G+ +  + LF+KML N + P+  TF  V+ ACS
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACS 491


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/597 (37%), Positives = 337/597 (56%), Gaps = 44/597 (7%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  +H+ +L+ G   +      L   Y  L     +  LF     PNV  +T ++  + +
Sbjct: 39  LLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAH 98

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
                 AL  + +ML + + PN FT ++++KAC+    L   + +H+H   FG   +L V
Sbjct: 99  FDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYV 154

Query: 166 CSSLVDMYGKCNDVDGARRVFDLM-------------------------------GCRNV 194
            + LVD Y +  DV  A+++FD M                               G ++V
Sbjct: 155 STGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDV 214

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQS------RDRPNQHMLASVINACASLGRLVS 248
           V W  +I  +AQ+   +EAL  FR+           + RPN+  + +V+++C  +G L  
Sbjct: 215 VCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALEC 274

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  H  V  +G + N  V +ALVDMY KCGS+  + KVF+ +    VV + SMI+G   
Sbjct: 275 GKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGI 334

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +G    +L LF+EM   G+KP+D+TFV VL AC+H+GLV +G +  DSM   YG+ P  +
Sbjct: 335 HGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVE 394

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           HY C+V++LGR GR+ EAY L +S++V+PD  P+LWGTLL A R+H  V +  E +  L+
Sbjct: 395 HYGCMVNLLGRAGRMQEAYDLVRSMEVEPD--PVLWGTLLWACRIHSNVSLGEEIAEILV 452

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
            +    +  YV LSN YA A  W  V  +RS MK +G+ KEPGCS +E++++ + F AG+
Sbjct: 453 SNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGD 512

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
               R  ++ S+L ++   +KER Y   KT  V  D+ ++ +E+ + +HSE+LALAFGLI
Sbjct: 513 RRHPRSKDIYSMLEKMNGWLKERHYT-PKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLI 571

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S   G  I+I+KNLR+C DCH V K++S I  R  ++RD NRFHHF NGSCSC D+W
Sbjct: 572 STSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 341/557 (61%), Gaps = 3/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++K    S+ +    L+N Y      + AR LF+ M   N V +TS+++GY+    
Sbjct: 101 LHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHC 160

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  ALLL++KM  +   P+E T AT++ AC+ L DL  G ++H+HI     +   V+ S+
Sbjct: 161 PNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSA 220

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV+MY KC D+  AR+VFD +  ++V +W+++I  + +N +  EAL++FRE    S  RP
Sbjct: 221 LVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP 280

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  + +VI+ACA LG L +G+  H  + R+    +  + ++L+DM++KCG ++ + ++F
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +S   ++++ SM+ G A +GLGR +L  F+ M +  ++P+++TF+GVL ACSH+GLV 
Sbjct: 341 DSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQ 400

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +    +   YG+   ++HY C+VD+L R G L EA +  + + + PDG   +WG++L
Sbjct: 401 EGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGA--IWGSML 458

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R++  +++  EA+  L+E        Y+ LSN YA    W  V  +R  M   GI K
Sbjct: 459 GACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQK 518

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PGCS V I +  ++F AG+      +E+  +LR++  K+K  GYV   T  V ++++D 
Sbjct: 519 TPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYV-ADTSEVLLNIDDN 577

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +EE V  HSE+LAL +GL+    G  I I+KNLR+C DCH + KL+S I +R   +RD 
Sbjct: 578 KKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDR 637

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++GSCSC D+W
Sbjct: 638 NRFHHFKDGSCSCRDYW 654



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 196/364 (53%), Gaps = 9/364 (2%)

Query: 56  SGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
           +GF+ +  +LN LI   + +    V  A  +F      +V+++ S++  ++N   P+ AL
Sbjct: 4   TGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRAL 63

Query: 114 LLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
             + +ML  +   P+ FTF +++K C++L +   GK +H  +  +    +L + ++L++M
Sbjct: 64  QSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNM 123

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y  C D+  AR +F+ MG RN V WTS+I  + +N   +EAL ++++   +    P++  
Sbjct: 124 YAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME-EDGFSPDEVT 182

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           +A++++ACA L  L  G   H  +     +   V+ SALV+MYAKCG +  + +VF+++S
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLS 242

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGI 351
           +  V  ++++I G  K      +L LF E+     ++PN+VT + V+ AC+  G ++ G 
Sbjct: 243 DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
              D + R       + + + ++DM  + G +D A ++  S+        + W ++++  
Sbjct: 303 WVHDYITRTQKGHSVSLNNS-LIDMFSKCGDIDAAKRIFDSMSYKD---LISWNSMVNGL 358

Query: 412 RLHG 415
            LHG
Sbjct: 359 ALHG 362


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 323/573 (56%), Gaps = 5/573 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           FI    + K+L     +H  +  S F  + F  N LI+ Y +      A ++FD+M + +
Sbjct: 57  FITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKD 116

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +VS+TSL+AGY     P  A+ L   ML     PN FTFA+++KA    AD   G QIH 
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                 +  ++ V S+L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G  
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +F E      +       +S+ +  A +G L  GK  H  +V+S  +    V + ++
Sbjct: 237 ALMVFAEMQRNGFE-ATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAK GS+  + KVF R+ N  +VT+ SM+   A+YGLG+ ++  F EM   GI  N +
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ +L ACSH GLV EG  + D M ++Y + P+ +HY  VVD+LGR G L+ A      
Sbjct: 356 TFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFK 414

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + ++P     +WG LL+A R+H    +   A++ + + +   +   V L N YA  G W+
Sbjct: 415 MPMEPTAA--VWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
               +R  MK TG+ KEP CSWVEI +  + F A +    R  E+  +  E+  K+++ G
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEG 532

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV      V + V+++ RE  +  HSE++ALAF LI +P G TIRIMKN+R+C DCH  F
Sbjct: 533 YVP-DMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAF 591

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS + ER+ VVRD NRFHHF NGSCSCGD+W
Sbjct: 592 KYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 155/305 (50%), Gaps = 5/305 (1%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    +   I AC+   +L   ++IH H+ +  F+ +  + +SL+ +Y KC  V  A +V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  +++VSWTS+I  +AQN    EA+ +      + R +PN    AS++ A  +   
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGM-LKGRFKPNGFTFASLLKAAGAYAD 167

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G   H + V+     +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G
Sbjct: 168 SGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISG 227

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G G  +L +F EM   G +    T+  +    +  G +++G      M +    + 
Sbjct: 228 FARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLT 287

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A     ++DM  ++G + +A K+ + + ++ D   + W ++L+A   +G    AV    
Sbjct: 288 -AFVGNTMLDMYAKSGSMIDARKVFERV-LNKD--LVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 426 QLIES 430
           ++ +S
Sbjct: 344 EMRKS 348



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 15/273 (5%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P   +  + I ACA    L   +  HG +  S  E +  + ++L+ +Y KCGSV  + KV
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+++    +V++TS+I G A+  +   ++ L   M+    KPN  TF  +L A       
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA--GAYA 166

Query: 348 DEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D GI   + ++  K     D    + ++DM  R G++D A   A   ++D   G + W  
Sbjct: 167 DSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMA--TAVFDKLDSKNG-VSWNA 223

Query: 407 LLS--ASRLHGRVDIAVEAS---NQLIESNQQVANAYVTLSNTYALA-GEWENVHSLRSE 460
           L+S  A +  G   + V A    N    ++   ++ +  L+   AL  G+W + H ++S 
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFER 493
            K T      G + +++  ++ +      +FER
Sbjct: 284 QKLTAF---VGNTMLDMYAKSGSMIDARKVFER 313


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 336/578 (58%), Gaps = 4/578 (0%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT A+ ++       L     V +   K GF+ + F LN LI+ Y        A  LF  
Sbjct: 172 HTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHT 231

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +    V+++ +++AGY+  G  +  + +F+ ML      +E T  +V  AC  L D   G
Sbjct: 232 VQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG 291

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           + I  + E  G   +  + ++LVDMY KC ++D ARR+FD M  R+VV+W+++I  + Q+
Sbjct: 292 QWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQS 351

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  EAL +F E    +   PN   + SV++ACA LG L +GK  H  + R       ++
Sbjct: 352 DRCREALAIFNEMQ-GTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVIL 410

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +ALVD YAKCG +  + K F  +   +  T+T++I G A  G  R +L+LF+ M+   I
Sbjct: 411 GTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANI 470

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +P DVTF+GVL ACSH  LV+EG +H  SM + YGI P  +HY C+VD+LGR G +DEAY
Sbjct: 471 EPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAY 530

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +  +++ ++P+   ++W  LLSA  +H  V+I  EA  Q++  +   +  Y+ LSNTYA 
Sbjct: 531 QFIRNMPIEPNA--VVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYAS 588

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            G+W+N   +R EMK  G+ K PGCS +E+    + F+A ++   + +E+   + E+   
Sbjct: 589 VGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIEN 648

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           +K  GY+   T    +DV++  ++  V  HSE+LA+AFGL+    G TIR+ KNLR+C D
Sbjct: 649 IKMVGYIPN-TADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCID 707

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   KLIS +  R+ +VRD NRFHHF++G CSC D+W
Sbjct: 708 CHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 175/338 (51%), Gaps = 6/338 (1%)

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTH 153
           SY  L+  ++  G P+ AL LF +ML +  V P++ T A  +K+CS + DL  G+ +  +
Sbjct: 137 SYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAY 196

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               GF  +  V +SL+ MY  C DV  A  +F  +  + V++W ++I  + +N    E 
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV 256

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +EMF+    + R   ++  L SV  AC  LG    G+         G   +  +A+ALVD
Sbjct: 257 VEMFKGM-LEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVD 315

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCG ++ + ++F+R+ +  VV +++MI G  +    R +L +FNEM    + PNDVT
Sbjct: 316 MYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVT 375

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            V VL AC+  G ++ G + + S  R+  +       T +VD   + G + +A K  +S+
Sbjct: 376 MVSVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESM 434

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
              P      W  L+     +GR   A+E  + ++E+N
Sbjct: 435 ---PVRNTWTWTALIKGMASNGRSREALELFSSMLEAN 469



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 131/307 (42%), Gaps = 22/307 (7%)

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+  S+  +I +  +     +AL +F E    +   P+QH +A+ + +C+ +  L  G+ 
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
                 + G   +  V ++L+ MYA CG V  +  +F+ +    V+ + +MI G  K G 
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
            +  +++F  M+      ++VT + V  AC   G  + G Q +     + G++      T
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNLAT 311

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL--IE 429
            +VDM  + G LD+A +L   +        + W  ++S      R   A+   N++   E
Sbjct: 312 ALVDMYAKCGELDKARRLFDRMH---SRDVVAWSAMISGYTQSDRCREALAIFNEMQGTE 368

Query: 430 SNQQVANAYVTLSNTYALA----GEWENVHSLRSEMKRTGI--------HKEPGCSWVEI 477
            N         LS    L     G+W + +  R ++  T I        + + GC    I
Sbjct: 369 VNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGC----I 424

Query: 478 RDQTYAF 484
           +D   AF
Sbjct: 425 KDAVKAF 431


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 345/575 (60%), Gaps = 5/575 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI-NCYV-RLKKTQVARQLFDEMLE 90
           ++  L+ CK +     VH+ ILK G   ++F  ++L+ +C + R    + A  +F ++ E
Sbjct: 34  WLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEE 93

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           P    Y +++ G +N    + ALLL+ +ML   + P+ FT+  V+KACS+L  L  G QI
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQI 153

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H H+   G + ++ V + L+ MYGKC  ++ A  VF+ M  ++V SW+SII AHA     
Sbjct: 154 HAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMW 213

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           HE L +  + + + R R  + +L S ++AC  LG    G+  HG+++R+  E N VV ++
Sbjct: 214 HECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTS 273

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+DMY KCGS+     VF  +++ +  +YT MI G A +G GR ++ +F++M+  G+ P+
Sbjct: 274 LIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPD 333

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           DV +VGVL ACSH+GLV+EG+Q  + M  ++ I P  +HY C+VD++GR G L EAY L 
Sbjct: 334 DVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLI 393

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           KS+ + P+   ++W +LLSA ++H  ++I   A+  +   N+     Y+ L+N YA A +
Sbjct: 394 KSMPIKPND--VVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKK 451

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W NV  +R+EM    + + PG S VE     Y F + +        +  +++++E ++K 
Sbjct: 452 WANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKF 511

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GY    +  V +DV+++ + + +  HS++LA+AF LI   +G  IRI +NLRMC DCH 
Sbjct: 512 EGYTPDMSQ-VLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHT 570

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K IS I ER+  VRD NRFHHF++G+CSC D+W
Sbjct: 571 YTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 333/558 (59%), Gaps = 7/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +++GF S       L++ Y +    + AR LFD MLE NVVS+ S++  Y+    
Sbjct: 258 IHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ A+++FQKML   V P + +    + AC+ L DL  G+ IH          N+ V +S
Sbjct: 318 PKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNS 377

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-R 227
           L+ MY KC +VD A  +F  +  R +VSW ++I+  AQN +  EAL  F +   Q+R  +
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM--QARTVK 435

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+     SVI A A L      K  HGVV+R+  + N  V +ALVDMYAKCG++  +  +
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLI 495

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +S   V T+ +MI G   +G+G+ +L+LF EM    I+PN VTF+ V+ ACSHSGLV
Sbjct: 496 FDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLV 555

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G++    M   Y I P   HY  +VD+LGR GRL+EA+     + V P     ++G +
Sbjct: 556 EAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN--VYGAM 613

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A ++H  V+ A + + +L E N +    +V L+N Y  A  WE V  +R  M R G+ 
Sbjct: 614 LGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K PGCS VEI+++ ++F++G+       ++ + L +L  ++KE GYV   T L+ + +ED
Sbjct: 674 KTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYV-PDTNLI-LGLED 731

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +E+++  HSE+LA++FGL++   G TI + KNLR+C DCH+  K IS +  R+ +VRD
Sbjct: 732 DVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRD 791

Query: 588 VNRFHHFRNGSCSCGDFW 605
           + RFHHF+NG+CSCGD+W
Sbjct: 792 MQRFHHFKNGACSCGDYW 809



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 168/294 (57%), Gaps = 1/294 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++KSGF  + F +  L N Y + ++   AR++FD M E ++VS+ +++AGY   G 
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            ++AL +   M    + P+  T  +V+ A S L  +  GK+IH +    GF   + + ++
Sbjct: 217 ARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATA 276

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  +  AR +FD M  RNVVSW S+I A+ QN    EA+ +F++       +P
Sbjct: 277 LVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKM-LDEGVKP 335

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
               +   ++ACA LG L  G+  H + V    + N  V ++L+ MY KC  V+ +  +F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++ + ++V++ +MI+G A+ G    +L+ F++M +R +KP+  T+V V+ A +
Sbjct: 396 GKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIA 449



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 166/314 (52%), Gaps = 1/314 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L  L  +   I K+G          L++ + R      A ++F+ + +   V Y
Sbjct: 44  LERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLY 103

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ G+  +     AL  F +M  + V P  + F  ++K C   A+L  GK+IH  +  
Sbjct: 104 YTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  +L   + L +MY KC  V  AR+VFD M  R++VSW +I+  ++QN     ALEM
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
                 +   +P+   + SV+ A ++L  +  GK  HG  +R+G +    +A+ALVDMYA
Sbjct: 224 V-NLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYA 282

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGS+  +  +F+ +   +VV++ SMI    +    + ++ +F +M+  G+KP DV+ +G
Sbjct: 283 KCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMG 342

Query: 337 VLHACSHSGLVDEG 350
            LHAC+  G ++ G
Sbjct: 343 ALHACADLGDLERG 356



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +H  A ++  C+SL  L   +    ++ ++G     +  + LV ++ + GSV+ + +VF 
Sbjct: 37  EHPAALLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFE 93

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            I     V Y +M+ G AK      +L  F  M    ++P    F  +L  C     +  
Sbjct: 94  PIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRV 153

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G + +  +  K G   D    T + +M  +  ++ EA K+   +   P+   + W T+++
Sbjct: 154 G-KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRM---PERDLVSWNTIVA 209

Query: 410 ASRLHGRVDIAVEASNQLIESN 431
               +G   +A+E  N + E N
Sbjct: 210 GYSQNGMARMALEMVNLMCEEN 231


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 337/558 (60%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNH-LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +HS  +K+  L      N+ L++ Y +      A ++F+ M E  VVS+TS++ GY+  G
Sbjct: 374 LHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A+ LF +M    V P+ +   +++ AC++  +L +GK +H +I     + N  V +
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L DMY KC  +  A  VF  M  ++V+SW ++I  + +N+  +EAL +F E   Q   +
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM--QRESK 551

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +A ++ ACASL  L  G+  HG  +R+G   +  V +A+VDMY KCG +  +  +
Sbjct: 552 PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSL 611

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I N  +V++T MI G   +G G  +++ FN+M   GI+P++V+F+ +L+ACSHSGL+
Sbjct: 612 FDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLL 671

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           DEG +  + M ++  I P+ +HY C+VD+L RTG L +A+K  K++ + PD    +WG L
Sbjct: 672 DEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDA--TIWGAL 729

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   R+H  V +A + + ++ E   +    YV L+N YA A +WE V  LR ++ + G+ 
Sbjct: 730 LCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLK 789

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K PGCSW+EI+ +   F AG+    +  ++  LL+ L  KMKE GY   KT    ++ ++
Sbjct: 790 KNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGY-SPKTAYALLNADE 848

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             +E  +  HSE+LA+AFG++++P G TIR+ KNLR+C DCH++ K +S    R+ ++RD
Sbjct: 849 REKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRD 908

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF++GSCSC  +W
Sbjct: 909 SSRFHHFKDGSCSCRGYW 926



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 194/374 (51%), Gaps = 11/374 (2%)

Query: 19  TRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78
           + QN           +Q   E K +     V S I  SG + +      L+  YV+    
Sbjct: 142 SSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDL 201

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           +  R +FD++ E  +  +  +++ Y   G    ++ LF++ML   + PN +TF++++K  
Sbjct: 202 KEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCF 261

Query: 139 SMLADLITGKQIHTHIETFGFQ-YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           + +A +  G+Q+H  I   GF  YN VV +SL+  Y     V  A+++FD +  R+V+SW
Sbjct: 262 AAVARVEEGRQVHGLICKLGFNSYNTVV-NSLISFYFVGRKVRCAQKLFDELTDRDVISW 320

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN---ACASLGRLVSGKVAHG 254
            S+I  + +N      +E+F +      D      LA+++N   ACA++G L+ GKV H 
Sbjct: 321 NSMISGYVKNGLDDRGIEIFIKMLVFGVDID----LATMVNVFVACANIGTLLLGKVLHS 376

Query: 255 VVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
             +++     +V   + L+DMY+KCG +N + +VF R+   +VV++TSMI G  + GL  
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            ++ LF+EM SRG+ P+      +L+AC+ +G +  G + +    R+  +  ++     +
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNAL 495

Query: 374 VDMLGRTGRLDEAY 387
            DM  + G + +A+
Sbjct: 496 TDMYAKCGSMKDAH 509


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 329/592 (55%), Gaps = 39/592 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH + ++ G +S+ F  N LI+ Y + K  + AR++FD+++  +VVS+TS+ + Y+N G 
Sbjct: 154 VHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGL 213

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P++ L +F +M  N V PN  T ++++ ACS L DL +G+ IH      G   N+ VCS+
Sbjct: 214 PRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSA 273

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH------------------------ 204
           LV +Y +C  V  AR VFDLM  R+VVSW  ++ A+                        
Sbjct: 274 LVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEAD 333

Query: 205 -----------AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
                       +N Q  +A+EM R+       +PNQ  ++S + AC+ L  L  GK  H
Sbjct: 334 EATWNAVIGGCMENGQTEKAVEMLRKMQNLGF-KPNQITISSFLPACSILESLRMGKEVH 392

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
             V R     +    +ALV MYAKCG +N S  VF+ I    VV + +MI+  A +G GR
Sbjct: 393 CYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGR 452

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
             L LF  M+  GIKPN VTF GVL  CSHS LV+EG+Q  +SM R + + PDA HY C+
Sbjct: 453 EVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACM 512

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           VD+  R GRL EAY+  + + ++P      WG LL A R++  V++A  ++N+L E    
Sbjct: 513 VDVFSRAGRLHEAYEFIQRMPMEPTASA--WGALLGACRVYKNVELAKISANKLFEIEPN 570

Query: 434 VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFER 493
               YV+L N    A  W      R  MK  GI K PGCSW+++ D+ + F  G+     
Sbjct: 571 NPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNME 630

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
             ++ + L EL  KMK  GY    T  V  D++ E + E +  HSE+LA+AFG++++   
Sbjct: 631 SDKIYNFLDELGEKMKSAGY-KPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQ 689

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +IR+ KNLR+C DCH+  K +S +V    +VRD  RFHHFRNG+CSC D W
Sbjct: 690 SSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 2/286 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A+QLFD + +P+  + ++L++ +   G P  A+ L+  +    + P+   F TV KAC  
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             D    K++H      G   +  + ++L+  YGKC  V+GARRVFD +  ++VVSWTS+
Sbjct: 145 SGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSM 204

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
              +         L +F E  +    +PN   L+S++ AC+ L  L SG+  HG  VR G
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNGV-KPNSVTLSSILPACSELKDLKSGRAIHGFAVRHG 263

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
              N  V SALV +YA+C SV  +  VF+ + +  VV++  ++            L LF+
Sbjct: 264 MIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFS 323

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           +M S+G++ ++ T+  V+  C  +G  ++ ++ L  M +  G  P+
Sbjct: 324 QMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKM-QNLGFKPN 368



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 47/321 (14%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T +  +    E K L S  ++H   ++ G + N F  + L++ Y R    + AR +FD M
Sbjct: 235 TLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLM 294

Query: 89  LEPNVVSYTSLMAGY-----------------------------------INMGQPQIAL 113
              +VVS+  ++  Y                                   +  GQ + A+
Sbjct: 295 PHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAV 354

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
            + +KM      PN+ T ++ + ACS+L  L  GK++H ++       +L   ++LV MY
Sbjct: 355 EMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMY 414

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            KC D++ +R VFD++  ++VV+W ++I+A+A +  G E L +F E   QS  +PN    
Sbjct: 415 AKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLF-ESMLQSGIKPNSVTF 473

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA------SALVDMYAKCGSVNYSDKV 287
             V++ C S  RLV      G+ + +    + +V       + +VD++++ G ++ + + 
Sbjct: 474 TGVLSGC-SHSRLVE----EGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEF 528

Query: 288 FNRISNPSVVTYTSMIVGAAK 308
             R+      +    ++GA +
Sbjct: 529 IQRMPMEPTASAWGALLGACR 549



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G    + ++F+ I  P   T +++I      GL   ++ L+  + +RGIKP++  F+ V 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 339 HACSHSG 345
            AC  SG
Sbjct: 140 KACGASG 146


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/606 (38%), Positives = 343/606 (56%), Gaps = 41/606 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL--FDEMLEPNVV 94
           L +C     +  VH+ I+++G    ++ L  LI    ++     +  L  F ++  PN  
Sbjct: 49  LHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPF 108

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH- 153
            +T+++ GY   G    +   + +M  + V P  FTF+ + KAC    ++  GKQ+H   
Sbjct: 109 LWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT 168

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA-------- 205
           I   GF  +L V +S++D+Y KC  +  AR+VFD M  R+VVSWT +IVA+A        
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228

Query: 206 -----------------------QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
                                  QN +  EALE F++      +  ++  LA VI+ACA 
Sbjct: 229 SGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET-DEVTLAGVISACAQ 287

Query: 243 LGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           LG +        +  RSG     N VV SAL+DMY+KCGS + + KVF  +   +V +Y+
Sbjct: 288 LGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYS 347

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMI+G A +G    +L LF++M+   I+PN VTF+G+L ACSH+GLV++G Q    M + 
Sbjct: 348 SMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKF 407

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +G+ P   HY C+VD+LGR G L+EA  L K++ ++P+GG  +WG LL A R+HG  DIA
Sbjct: 408 FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG--VWGALLGACRIHGNPDIA 465

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD- 479
             A+N+L +        Y+ LSN YA AG WE V  LR  ++  G  K PGCSW E ++ 
Sbjct: 466 QIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNG 525

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F+AG+    R SE+   L++L  +++  GY     G    D+ D+ +E I+  HSE
Sbjct: 526 EIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGY-KPNLGSAPYDLTDDEKERILMSHSE 584

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LALA+GL+    G TI+IMKN+R+C DCH+V    S+I  R+ +VRD  RFHHF NG+C
Sbjct: 585 KLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTC 644

Query: 600 SCGDFW 605
           SCG+FW
Sbjct: 645 SCGNFW 650


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 332/559 (59%), Gaps = 7/559 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H    ++GF         +++ Y +    + AR +F  M   NVVS+ +++ GY   G
Sbjct: 264 SIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG 323

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + A   F KML   V P   +    + AC+ L DL  G+ +H  ++     +++ V +
Sbjct: 324 ESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMN 383

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD- 226
           SL+ MY KC  VD A  VF  +  + VV+W ++I+ +AQN   +EAL +F E   QS D 
Sbjct: 384 SLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEM--QSHDI 441

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+   L SVI A A L      K  HG+ +R+  + N  V +AL+D +AKCG++  + K
Sbjct: 442 KPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARK 501

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ +    V+T+ +MI G    G GR +LDLFNEM +  +KPN++TF+ V+ ACSHSGL
Sbjct: 502 LFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGL 561

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V+EG+ + +SM   YG+ P   HY  +VD+LGR GRLD+A+K  + + V P  G  + G 
Sbjct: 562 VEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKP--GITVLGA 619

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           +L A R+H  V++  + +++L + +      +V L+N YA A  W+ V  +R+ M++ GI
Sbjct: 620 MLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGI 679

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGCS VE+R++ + FY+G+    +   + + L  L  +MK  GYV     +   DVE
Sbjct: 680 QKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI--HDVE 737

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           ++ +E+++  HSERLA+AFGL++   G  I I KNLR+C DCH+  K IS +  R+ +VR
Sbjct: 738 EDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVR 797

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D+ RFHHF+NG CSCGD+W
Sbjct: 798 DLRRFHHFKNGICSCGDYW 816



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 203/392 (51%), Gaps = 17/392 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++ +GF SN F +  ++N Y + ++ + A ++F+ M + ++VS+ +++AGY   G 
Sbjct: 164 IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGF 223

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ +  +M      P+  T  +V+ A + L  L  G+ IH +    GF+Y + V ++
Sbjct: 224 ARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATA 283

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++D Y KC  V  AR VF  M  RNVVSW ++I  +AQN +  EA   F +   +  +  
Sbjct: 284 MLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPT 343

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N  M+ + ++ACA+LG L  G+  H ++      F+  V ++L+ MY+KC  V+ +  VF
Sbjct: 344 NVSMMGA-LHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVF 402

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + + +VVT+ +MI+G A+ G    +L+LF EM S  IKP+  T V V+ A     L D
Sbjct: 403 GNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA-----LAD 457

Query: 349 EGIQHLDSMYRKYGI--IPDAKHYTC--VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
             +           I  + D   + C  ++D   + G +  A KL   +Q   +   + W
Sbjct: 458 LSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ---ERHVITW 514

Query: 405 GTLLS--ASRLHGR--VDIAVEASNQLIESNQ 432
             ++    +  HGR  +D+  E  N  ++ N+
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNE 546



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 187/350 (53%), Gaps = 2/350 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L  L  +   I+K+GF +       LI+ + +      A ++F+ +     V Y
Sbjct: 51  LELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLY 110

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY      + A+  +++M  + V P  + F  +++      DL  G++IH  + T
Sbjct: 111 HTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVIT 170

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GFQ NL   +++V++Y KC  ++ A ++F+ M  R++VSW +++  +AQN     A+++
Sbjct: 171 NGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQV 230

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
             +   ++  +P+   L SV+ A A L  L  G+  HG   R+G E+   VA+A++D Y 
Sbjct: 231 VLQMQ-EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYF 289

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGSV  +  VF  +S+ +VV++ +MI G A+ G    +   F +M+  G++P +V+ +G
Sbjct: 290 KCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMG 349

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            LHAC++ G ++ G +++  +  +  I  D      ++ M  +  R+D A
Sbjct: 350 ALHACANLGDLERG-RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/606 (38%), Positives = 343/606 (56%), Gaps = 41/606 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL--FDEMLEPNVV 94
           L +C     +  VH+ I+++G    ++ L  LI    ++     +  L  F ++  PN  
Sbjct: 49  LHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPF 108

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH- 153
            +T+++ GY   G    +   + +M  + V P  FTF+ + KAC    ++  GKQ+H   
Sbjct: 109 LWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT 168

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA-------- 205
           I   GF  +L V +S++D+Y KC  +  AR+VFD M  R+VVSWT +IVA+A        
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228

Query: 206 -----------------------QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
                                  QN +  EALE F++      +  ++  LA VI+ACA 
Sbjct: 229 SGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET-DEVTLAGVISACAQ 287

Query: 243 LGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           LG +        +  RSG     N VV SAL+DMY+KCGS + + KVF  +   +V +Y+
Sbjct: 288 LGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYS 347

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMI+G A +G    +L LF++M+   I+PN VTF+G+L ACSH+GLV++G Q    M + 
Sbjct: 348 SMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKF 407

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +G+ P   HY C+VD+LGR G L+EA  L K++ ++P+GG  +WG LL A R+HG  DIA
Sbjct: 408 FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG--VWGALLGACRIHGNPDIA 465

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD- 479
             A+N+L +        Y+ LSN YA AG WE V  LR  ++  G  K PGCSW E ++ 
Sbjct: 466 QIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNG 525

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F+AG+    R SE+   L++L  +++  GY     G    D+ D+ +E I+  HSE
Sbjct: 526 EIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGY-KPNLGSAPYDLTDDEKERILMSHSE 584

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LALA+GL+    G TI+IMKN+R+C DCH+V    S+I  R+ +VRD  RFHHF NG+C
Sbjct: 585 KLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTC 644

Query: 600 SCGDFW 605
           SCG+FW
Sbjct: 645 SCGNFW 650


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/588 (37%), Positives = 340/588 (57%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+K GF SN F  N LI+ Y    +  VAR +FD   + +VV++  +++GY    Q
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ 200

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              ++ LF +M    V P+  T  +V+ ACS L DL  GK++H +++    +   V+ ++
Sbjct: 201 FDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENA 260

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV-------------------------- 202
           L+DMY  C D+D A  +FD M  R+V+SWT+I+                           
Sbjct: 261 LIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSW 320

Query: 203 -----AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                 + Q  +  E L +FRE    +  +P++  + S++ ACA LG L  G+     + 
Sbjct: 321 TAMIDGYLQVNRFKEVLSLFREMQ-AANIKPDEFTMVSILTACAHLGALELGEWIKAYID 379

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           ++  + +  V +AL+DMY  CG+V  + ++FN + +   +++T++I G A  G G  +LD
Sbjct: 380 KNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALD 439

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           +F++M+   I P++VT +GVL AC+HSG+VD+G +    M  ++GI P+  HY C+VD+L
Sbjct: 440 MFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLL 499

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G L EA+++ K++ V P+   ++WG+LL A R+H   ++A  A+ Q++E   +    
Sbjct: 500 GRAGHLKEAHEVIKNMPVKPNS--IVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAV 557

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV L N YA    WE +H +R  M   GI K PGCS +E+    + F AG+ +  +  E+
Sbjct: 558 YVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEI 617

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            S L E+   +K  GY    T  VF+D+ +E +E  V  HSE+LA+AFGLIS   G+TIR
Sbjct: 618 YSKLDEMSVDLKFAGY-SPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIR 676

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLRMC DCH V KL+S +  R+ +VRD  RFHHFR+GSCSC D+W
Sbjct: 677 IVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 223/452 (49%), Gaps = 38/452 (8%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-- 70
           ++A++L+          +   +  ++ CK +  L  +HS+ + +G +SN      +I   
Sbjct: 2   ISATTLSPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC 61

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
           C   L   + AR +FD M  PN   + +++ GY  +G P  A+ ++ +ML   V P+E+T
Sbjct: 62  CKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYT 121

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           +  ++K  +    +  G+++H HI   GF  N+ V ++L+ +Y    +V  AR VFD   
Sbjct: 122 YPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSS 181

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
             +VV+W  +I  + ++ Q  E++++F E   + R  P+   L SV++AC+ L  L  GK
Sbjct: 182 KGDVVTWNVMISGYNRSKQFDESMKLFDEME-RMRVLPSSITLVSVLSACSKLKDLNVGK 240

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  V     E   V+ +AL+DMYA CG ++ +  +F+ + +  V+++T+++ G    G
Sbjct: 241 RVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLG 300

Query: 311 -----------------------------LGRFS--LDLFNEMISRGIKPNDVTFVGVLH 339
                                        + RF   L LF EM +  IKP++ T V +L 
Sbjct: 301 QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILT 360

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           AC+H G ++ G + + +   K  I  D+     ++DM    G +++A ++  ++   P  
Sbjct: 361 ACAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM---PHR 416

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
             + W  ++    ++G  + A++  +Q+++++
Sbjct: 417 DKISWTAVIFGLAINGYGEEALDMFSQMLKAS 448


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 340/557 (61%), Gaps = 3/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++K    S+ +    L+N Y      + AR LF+ M   N V +TS+++GY+    
Sbjct: 101 LHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHC 160

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  ALLL++KM  +   P+E T AT++ AC+ L DL  G ++H+HI     +   V+ S+
Sbjct: 161 PNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSA 220

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV+MY KC D+  AR+VFD +  ++V +W+++I  + +N +  EAL++FRE    S  RP
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP 280

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  + +VI+ACA LG L +G+  H  + R+    +  + ++L+DM++KCG ++ + ++F
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +S   ++++ SM+ G A +GLGR +L  F  M +  ++P+++TF+GVL ACSH+GLV 
Sbjct: 341 DSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQ 400

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +    +   YG+   ++HY C+VD+L R G L EA +  + + + PDG   +WG++L
Sbjct: 401 EGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGA--IWGSML 458

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R++  +++  EA+  L++        Y+ LSN YA    W  V  +R  M   GI K
Sbjct: 459 GACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQK 518

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PGCS V I +  ++F AG+      +E+  +LR++  K+K  GYV   T  V ++++D 
Sbjct: 519 TPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYV-ADTSEVLLNIDDN 577

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +EE V  HSE+LAL +GL+    G  I I+KNLR+C DCH + KL+S I +R   +RD 
Sbjct: 578 KKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDR 637

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++GSCSC D+W
Sbjct: 638 NRFHHFKDGSCSCRDYW 654



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 197/364 (54%), Gaps = 9/364 (2%)

Query: 56  SGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
           +GF+ +  +LN LI   + +    V  A  +F    E +V+++ S++  ++N   P+ AL
Sbjct: 4   TGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRAL 63

Query: 114 LLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
             + +ML  +   P+ FTF +++K C++L +   GK +H  +  +    +L + ++L++M
Sbjct: 64  QSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNM 123

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y  C D+  AR +F+ MG RN V WTS+I  + +N   +EAL ++++   +    P++  
Sbjct: 124 YAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME-EDGFSPDEVT 182

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           +A++++ACA L  L  G   H  +     +   V+ SALV+MYAKCG +  + +VF+++S
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLS 242

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGI 351
           +  V  ++++I G  K      +L LF E+     ++PN+VT + V+ AC+  G ++ G 
Sbjct: 243 DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
              D + R       + + + ++DM  + G +D A ++  S+        + W ++++  
Sbjct: 303 WVHDYITRTQKGHSVSLNNS-LIDMFSKCGDIDAAKRIFDSMSYKD---LISWNSMVNGF 358

Query: 412 RLHG 415
            LHG
Sbjct: 359 ALHG 362


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 331/572 (57%), Gaps = 8/572 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C HL  L     VH  ++ SG+  +T   N LIN Y +      ++++F  M   + 
Sbjct: 382 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 441

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S++  YI  G    A+ LF KM+   V P+  T+  ++   + L DL  GK++H  
Sbjct: 442 VSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD 500

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +   GF  N+VV ++LVDMY KC ++  + +VF+ M  R++++W +II +   +   +  
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 560

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L M      +    P+   + S++  C+ L     GK  HG + + G E +  V + L++
Sbjct: 561 LRMISRMRTEGV-TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIE 619

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KCGS+  S +VF  +    VVT+T++I     YG G+ ++  F EM + GI P+ V 
Sbjct: 620 MYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 679

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FV ++ ACSHSGLV+EG+ +   M + Y I P  +HY CVVD+L R+  LD+A     S+
Sbjct: 680 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 739

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            + PD    +WG LLSA R+ G  +IA   S ++IE N      YV +SN YA  G+W+ 
Sbjct: 740 PLKPDSS--IWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQ 797

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V S+R  +K  G+ K+PGCSW+EI+++ Y F  G    E+  EV  LL  L   M + GY
Sbjct: 798 VRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGY 857

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           +      V  D++++ + +I+  HSERLA+AFGL++   G  +++MKNLR+C DCH V K
Sbjct: 858 I-ANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTK 916

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS I +R+ +VRD NRFH F++G+CSCGD+W
Sbjct: 917 YISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 215/412 (52%), Gaps = 12/412 (2%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAH-FIQQLQECKHLISL---ASVHSEILKSGF 58
           ++LT N +F+  A SL  + +R       + F   +  C  L+      S+H  +L  GF
Sbjct: 147 RALTHNGLFS-EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGF 205

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
            S+ +  N LI+ Y R      AR++F+EM   +VVS+ SL++GY   G    AL ++ +
Sbjct: 206 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 265

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
                V P+ +T ++V++AC  L  +  G  IH  IE  G + +++V + L+ MY K N 
Sbjct: 266 FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 325

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +   RR+FD M  R+ VSW ++I  ++Q     E++++F E   Q   +P+   + S++ 
Sbjct: 326 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQF--KPDLLTITSILQ 383

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC  LG L  GK  H  ++ SG E +   ++ L++MYAKCG++  S +VF+ +     V+
Sbjct: 384 ACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS 443

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + SMI    + G    ++ LF +M+   +KP+ VT+V +L   +  G +  G + L    
Sbjct: 444 WNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLG-KELHCDL 501

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            K G   +      +VDM  + G + ++ K+ ++++       + W T++++
Sbjct: 502 AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARD---IITWNTIIAS 550



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 217/457 (47%), Gaps = 42/457 (9%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGY 103
           L  +HS I+  G   +      LI  Y   +    +  +F  +  P  NV  + S++   
Sbjct: 91  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYXWNSIIRAL 149

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
            + G    AL L+ +     + P+ +TF +VI AC+ L D    K IH  +   GF  +L
Sbjct: 150 THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDL 209

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + ++L+DMY + ND+D AR+VF+ M  R+VVSW S+I  +  N   +EALE++  F   
Sbjct: 210 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL 269

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+ + ++SV+ AC  LG +  G + HG++ + G + + +V + L+ MY K   +  
Sbjct: 270 GV-VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID 328

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
             ++F+++     V++ +MI G ++ GL   S+ LF EM+++  KP+ +T   +L AC H
Sbjct: 329 GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGH 387

Query: 344 SG-----------LVDEGIQH-------LDSMYRKYGII------------PDAKHYTCV 373
            G           ++  G +        L +MY K G +             D+  +  +
Sbjct: 388 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 447

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL----IE 429
           +++  + G  DEA KL K ++ D     + +  LLS S   G + +  E    L      
Sbjct: 448 INVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN 507

Query: 430 SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           SN  V+N   TL + YA  GE  +   +   MK   I
Sbjct: 508 SNIVVSN---TLVDMYAKCGEMGDSLKVFENMKARDI 541



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 172/406 (42%), Gaps = 46/406 (11%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F+++ +A +  A      ++H+ I T G  ++++  + L+  Y    D   +  VF L  
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 191 -CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              NV  W SII A   N    EAL ++ E   + R +P+ +   SVINACA L      
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMA 193

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  V+  G   +  + +AL+DMY +   ++ + KVF  +    VV++ S+I G    
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG-IQH--------------- 353
           G    +L+++    + G+ P+  T   VL AC   G V+EG I H               
Sbjct: 254 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 313

Query: 354 --LDSMYRKYG------------IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI--QVDP 397
             L SMY K+             ++ DA  +  ++    + G  +E+ KL   +  Q  P
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 373

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYALAGEWENVHS 456
           D   L   ++L A    G ++      + +I S  +    A   L N YA  G     + 
Sbjct: 374 D--LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG-----NL 426

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           L S+   +G+  +   SW    +     Y  N  F+   ++  +++
Sbjct: 427 LASQEVFSGMKCKDSVSW----NSMINVYIQNGSFDEAMKLFKMMK 468


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/590 (38%), Positives = 341/590 (57%), Gaps = 39/590 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV-------------- 94
           VH +IL+ GF +  FT + L++ Y ++     AR++FDEM   NVV              
Sbjct: 167 VHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKM 226

Query: 95  -----------------SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                            ++T+++ G    G    AL +F++M    V  +++TF +++ A
Sbjct: 227 VAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTA 286

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  LA L  GKQIH +I    ++ N+ V S+LVDMY KC  V  A  VF  M  +N++SW
Sbjct: 287 CGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISW 346

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGV 255
           T++IV + QN  G EA+ +F E     RD  +P+   L SVI++CA+L  L  G   H +
Sbjct: 347 TAMIVGYGQNGCGEEAVRVFSEMQ---RDGIKPDDFTLGSVISSCANLASLEEGAQFHCL 403

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
            + SG      V++ALV +Y KCGS+  + ++F+ +S    V++T++++G A++G  + +
Sbjct: 404 ALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKET 463

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           +DLF +M+S+G+KP+ VTF+GVL ACS SGLVD+G  +  SM + + I+P   HYTC++D
Sbjct: 464 IDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMID 523

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +  R+G L +A +  K +   PD     W TLLSA RL G ++I   A+  L++ + Q  
Sbjct: 524 LYSRSGWLKQAEEFIKQMPRCPDA--FGWATLLSACRLRGDMEIGKWAAENLLKLDPQNP 581

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
            +YV L + +A  GEW +V  LR  M+   + KEPGCSW++ +++ + F A +       
Sbjct: 582 ASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSR 641

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
            +   L+ L  KM E GY    +  V  DV D  +  ++  HSE+LA+AFGLI +P  + 
Sbjct: 642 TIYEKLQWLNSKMVEEGYKPDVSS-VLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMP 700

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IRI+KNLR+C DCH+  K IS I  RD +VRD  RFH F NG CSCGDFW
Sbjct: 701 IRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 179/366 (48%), Gaps = 43/366 (11%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  T N L++   R    +   +LF  + + + VSY +L+AG+   G    A   +  +L
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 121 GNL--VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
            +   V P+  T + V+   S L D   G+Q+H  I   GF       S LVDMY K   
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGP 195

Query: 179 VDGARRVFDLMGCRNVV-------------------------------SWTSIIVAHAQN 207
           +  ARRVFD M  +NVV                               +WT+++    QN
Sbjct: 196 IGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQN 255

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               EAL++FR    +     +Q+   S++ AC +L  L  GK  H  + R+  E N  V
Sbjct: 256 GLESEALDVFRRMRAEGVG-IDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFV 314

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            SALVDMY+KC SV  ++ VF R+   +++++T+MIVG  + G G  ++ +F+EM   GI
Sbjct: 315 GSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGI 374

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQH----LDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           KP+D T   V+ +C++   ++EG Q     L S  R Y  + +A     +V + G+ G +
Sbjct: 375 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNA-----LVTLYGKCGSI 429

Query: 384 DEAYKL 389
           ++A++L
Sbjct: 430 EDAHRL 435



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 157/312 (50%), Gaps = 14/312 (4%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M   LT+N + + A     R         +  F   L  C  L +L     +H+ I ++ 
Sbjct: 248 MVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTC 307

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           +  N F  + L++ Y + +  ++A  +F  M+  N++S+T+++ GY   G  + A+ +F 
Sbjct: 308 YEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFS 367

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +M  + + P++FT  +VI +C+ LA L  G Q H      G +  + V ++LV +YGKC 
Sbjct: 368 EMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCG 427

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            ++ A R+FD M   + VSWT++++ +AQ  +  E +++F +   +   +P+      V+
Sbjct: 428 SIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGV-KPDGVTFIGVL 486

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVA-----SALVDMYAKCGSVNYSDKVFNRIS 292
           +AC+  G +  G+        S  + +D+V      + ++D+Y++ G +  +++   ++ 
Sbjct: 487 SACSRSGLVDKGR----SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMP 542

Query: 293 N-PSVVTYTSMI 303
             P    + +++
Sbjct: 543 RCPDAFGWATLL 554


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 340/558 (60%), Gaps = 4/558 (0%)

Query: 48   SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
            S+H+ + K GF  +    N L+  Y+++   Q   ++F+     +++S+ +L++G+ +  
Sbjct: 452  SIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNE 511

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
                 L +F +ML     PN +TF +++++CS L+D+  GKQ+H  I       N  V +
Sbjct: 512  TCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGT 571

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
            +LVDMY K   ++ A  +F+ +  R++ +WT I+  +AQ+ QG +A++ F +   +   +
Sbjct: 572  ALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV-K 630

Query: 228  PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            PN+  LAS ++ C+ +  L SG+  H + +++G   +  VASALVDMYAKCG V  ++ V
Sbjct: 631  PNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVV 690

Query: 288  FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
            F+ + +   V++ ++I G +++G G  +L  F  M+  G  P++VTF+GVL ACSH GL+
Sbjct: 691  FDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 750

Query: 348  DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            +EG +H +S+ + YGI P  +HY C+VD+LGR G+  E     + +++  +   L+W T+
Sbjct: 751  EEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSN--VLIWETV 808

Query: 408  LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
            L A ++HG ++    A+ +L E   ++ + Y+ LSN +A  G W++V ++R+ M   G+ 
Sbjct: 809  LGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVK 868

Query: 468  KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
            KEPGCSWVE+  Q + F + +    +  E+   L++L +K+   GY    T  V  +V D
Sbjct: 869  KEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYT-PNTDHVLHNVSD 927

Query: 528  EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
              ++E++  HSERLALAF L+S     TIRI KNLR+C DCHD  K IS+I  ++ VVRD
Sbjct: 928  REKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRD 987

Query: 588  VNRFHHFRNGSCSCGDFW 605
            +N FHHF+NGSCSC +FW
Sbjct: 988  INCFHHFKNGSCSCQNFW 1005



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 203/386 (52%), Gaps = 15/386 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H +++KSG   ++   N L+N Y +      A ++F E+ E +VVS+T+L+ G++  G
Sbjct: 149 AIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG 208

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A+ LF +M    V  NEFT+AT +KACSM  DL  GKQ+H      G   +L V S
Sbjct: 209 YGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGS 268

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF-----REFNY 222
           +LVD+Y KC ++  A RVF  M  +N VSW +++   AQ     + L +F      E N+
Sbjct: 269 ALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINF 328

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                 ++  L++V+  CA+ G L +G++ H + +R GCE ++ ++  LVDMY+KCG   
Sbjct: 329 ------SKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + KVF RI +P VV+++++I    + G  R + ++F  M   G+ PN  T   ++ A +
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G +  G + + +   KYG   D      +V M  + G + +  ++    +   +   +
Sbjct: 443 DLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV---FEATTNRDLI 498

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLI 428
            W  LLS    +   D  +   NQ++
Sbjct: 499 SWNALLSGFHDNETCDTGLRIFNQML 524



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 193/369 (52%), Gaps = 2/369 (0%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+   ++  T A  ++    C  L     VH+E +K G  S+ F  + L++ Y +  +
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGE 279

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
             +A ++F  M + N VS+ +L+ G+  MG  +  L LF +M G+ +  ++FT +TV+K 
Sbjct: 280 MVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG 339

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+   +L  G+ +H+     G + +  +   LVDMY KC     A +VF  +   +VVSW
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSW 399

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           ++II    Q  Q  EA E+F+   + S   PNQ  LAS+++A   LG L  G+  H  V 
Sbjct: 400 SAIITCLDQKGQSREAAEVFKRMRH-SGVIPNQFTLASLVSAATDLGDLYYGESIHACVC 458

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           + G E+++ V +ALV MY K GSV    +VF   +N  ++++ +++ G          L 
Sbjct: 459 KYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLR 518

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           +FN+M++ G  PN  TF+ +L +CS    VD G Q + +   K  +  +    T +VDM 
Sbjct: 519 IFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ-VHAQIVKNSLDGNDFVGTALVDMY 577

Query: 378 GRTGRLDEA 386
            +   L++A
Sbjct: 578 AKNRFLEDA 586



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 149/293 (50%), Gaps = 7/293 (2%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           ++ +++ C+   DL  GK IH  +   G   +  + +SLV++Y KC   + A +VF  + 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R+VVSWT++I        G  A+ +F E   +  +  N+   A+ + AC+    L  GK
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVE-ANEFTYATALKACSMCLDLEFGK 249

Query: 251 VAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
             H   ++ G +F+D+ V SALVD+YAKCG +  +++VF  +   + V++ +++ G A+ 
Sbjct: 250 QVHAEAIKVG-DFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G     L+LF  M    I  +  T   VL  C++SG +  G Q + S+  + G   D   
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFI 367

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             C+VDM  + G   +A K+   I+ DPD   + W  +++     G+   A E
Sbjct: 368 SCCLVDMYSKCGLAGDALKVFVRIE-DPD--VVSWSAIITCLDQKGQSREAAE 417



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 8/200 (4%)

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           E   ++R  ++ S+ R  Q+  + ++  CAS G L  GK  HG V++SG   +  + ++L
Sbjct: 112 EKKRIWRGLDFDSKGRLRQY--SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSL 169

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           V++YAKCGS NY+ KVF  I    VV++T++I G    G G  +++LF EM   G++ N+
Sbjct: 170 VNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANE 229

Query: 332 VTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            T+   L ACS    ++ G Q H +++  K G   D    + +VD+  + G +  A ++ 
Sbjct: 230 FTYATALKACSMCLDLEFGKQVHAEAI--KVGDFSDLFVGSALVDLYAKCGEMVLAERVF 287

Query: 391 KSIQVDPDGGPLLWGTLLSA 410
             +   P    + W  LL+ 
Sbjct: 288 LCM---PKQNAVSWNALLNG 304



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  + +L S   +HS  +K+G   + F  + L++ Y +    + A  +FD ++  + 
Sbjct: 640 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHT 152
           VS+ +++ GY   GQ   AL  F+ ML     P+E TF  V+ ACS +  +  GK+  ++
Sbjct: 700 VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS 759

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVA 203
             + +G    +   + +VD+ G+           + M    NV+ W +++ A
Sbjct: 760 LSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGA 811


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 339/557 (60%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K+GF S+ +    LI+ Y +      AR++ + +   +VVS+TS++AGY+    
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL  F+ M    +WP+    A+ I AC+ +  +  G+QIH+ +   G+  ++ + ++
Sbjct: 427 CKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNA 486

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV++Y +C     A  +F+ +  ++ ++W  ++   AQ+    EALE+F +  YQ+  + 
Sbjct: 487 LVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKM-YQAGVKY 545

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S I+A A+L  +  GK  H  V+++GC     VA+AL+ +Y KCGS+  +   F
Sbjct: 546 NVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQF 605

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +S  + V++ ++I   +++G G  +LDLF++M   G+KPNDVTF+GVL ACSH GLV+
Sbjct: 606 FEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 665

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ +  SM  ++GI P   HY CVVD+LGR G+LD A K  + + V  +   ++W TLL
Sbjct: 666 EGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANA--MVWRTLL 723

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA R+H  ++I   A+  L+E     + +YV LSN YA+ G+W     +R  MK  G+ K
Sbjct: 724 SACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRK 783

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E+++  +AF+ G+ L     ++   L +L+ ++ + GY+ G    +F + E E
Sbjct: 784 EPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNY-FLFHEKEKE 842

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++    +HSE+LA+AFGL+S+P  + +R++KNLR+C DCH   K  S+++ R+ V+RDV
Sbjct: 843 QKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDV 902

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF NG+CSCGDFW
Sbjct: 903 YRFHHFNNGNCSCGDFW 919



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 195/367 (53%), Gaps = 8/367 (2%)

Query: 33  FIQQLQEC----KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L+EC    KH   +  +H++ +  G   +    N LI+ Y +    Q AR++F+++
Sbjct: 44  FACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQL 103

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              + VS+ ++++GY   G  + A+ L+ +M  + V P  +  ++V+ AC+  A    G+
Sbjct: 104 SARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGR 163

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H  +   G     VV ++L+ +Y +   +  A RVF  M   + V++ ++I  HAQ  
Sbjct: 164 LVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCG 223

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
            G  ALE+F E    S   P+   +AS++ ACAS+G L  GK  H  ++++G   + ++ 
Sbjct: 224 NGESALEIFEEMRL-SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIE 282

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
            +L+D+Y KCG +  + ++F      +VV +  M+V   +      S DLF +M++ G++
Sbjct: 283 GSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVR 342

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           PN+ T+  +L  C+++G ++ G Q HL S+  K G   D      ++DM  + G LD+A 
Sbjct: 343 PNEFTYPCLLRTCTYAGEINLGEQIHLLSI--KTGFESDMYVSGVLIDMYSKYGWLDKAR 400

Query: 388 KLAKSIQ 394
           ++ + ++
Sbjct: 401 RILEVLE 407



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 191/371 (51%), Gaps = 13/371 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS +LK+G   +      L++ YV+      A ++F      NVV +  ++  Y  +  
Sbjct: 266 LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISD 325

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              +  LF +M+   V PNEFT+  +++ C+   ++  G+QIH      GF+ ++ V   
Sbjct: 326 LAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGV 385

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +D ARR+ +++  ++VVSWTS+I  + Q+    EALE F++        P
Sbjct: 386 LIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG-IWP 444

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   LAS I+ACA +  +  G+  H  V  SG   +  + +ALV++YA+CG    +  +F
Sbjct: 445 DNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLF 504

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I +   +T+  M+ G A+ GL   +L++F +M   G+K N  TFV  + A ++   + 
Sbjct: 505 EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIK 564

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA----YKLAKSIQVDPDGGPLLW 404
           +G Q + +   K G   + +    ++ + G+ G +++A    +++++   V        W
Sbjct: 565 QGKQ-IHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS-------W 616

Query: 405 GTLLSASRLHG 415
            T++++   HG
Sbjct: 617 NTIITSCSQHG 627



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 193/374 (51%), Gaps = 5/374 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+++ K G  S T   N LI  Y+R     +A ++F EM   + V++ +L++ +   G 
Sbjct: 165 VHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGN 224

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F++M  +   P+  T A+++ AC+ + DL  GKQ+H+++   G   + ++  S
Sbjct: 225 GESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGS 284

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC  +  A  +F      NVV W  ++VA+ Q +   ++ ++F +    +  RP
Sbjct: 285 LLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQM-VAAGVRP 343

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+     ++  C   G +  G+  H + +++G E +  V+  L+DMY+K G ++ + ++ 
Sbjct: 344 NEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VV++TSMI G  ++   + +L+ F +M   GI P+++     + AC+    + 
Sbjct: 404 EVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMR 463

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q + S     G   D   +  +V++  R GR  EA+ L ++I+       + W  ++
Sbjct: 464 QG-QQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIE---HKDKITWNGMV 519

Query: 409 SASRLHGRVDIAVE 422
           S     G  + A+E
Sbjct: 520 SGFAQSGLYEEALE 533


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 350/583 (60%), Gaps = 8/583 (1%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT    I        L+    VH  +L++GF  + F    LIN Y        AR++FD+
Sbjct: 71  HTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDK 130

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC----SMLAD 143
                +  Y +L       G  +  L ++++M    +  + FT+  V+KAC      ++ 
Sbjct: 131 TRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSL 190

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           L  G++IH HI   G+   + + ++LVDMY K   V  A  VF+ M  +NVVSW+++I  
Sbjct: 191 LNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIAC 250

Query: 204 HAQNAQGHEALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
           +A+N +  EALE+FRE   +++D  PN   + SV+ ACA+L  L  G++ HG ++R G +
Sbjct: 251 YAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLD 310

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
               V SALV MYA+CG +    +VF+++    VV++ S+I     +G G+ ++ +F EM
Sbjct: 311 SILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEM 370

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G++P+ ++FV VL ACSH+GLVDEG    +SM+  +GI P  +HY C+VD+LGR  R
Sbjct: 371 TYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANR 430

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L+EA K+ ++++++P  GP +WG+LL + R+H  V++A  AS +L +     A  YV L+
Sbjct: 431 LEEAAKIIENMRIEP--GPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLA 488

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           + YA AG W+ V  ++  ++  G+ K PG SW+E++ + Y+F + + +  R  ++ +LL 
Sbjct: 489 DIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLV 548

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
           +L  ++KE GYV  +T +V  D++   +E IV  HSE+LA+AFGLI+  KG  IRI K+L
Sbjct: 549 KLSMELKEEGYV-PQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSL 607

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH   K IS    ++ +VRDVNRFHHFR+G CSCGD+W
Sbjct: 608 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 13/297 (4%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P + T+  +I +C+    L+  +++H H+   GF  +  + + L++MY   + +D AR+V
Sbjct: 68  PAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKV 127

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS-VINACASLG 244
           FD    R +  + ++  A +    G E L M+R  N  S   P+     + V+ AC +  
Sbjct: 128 FDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMN--SIGIPSDRFTYTYVLKACVASE 185

Query: 245 RLVS----GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             VS    G+  H  ++R G +    + + LVDMYAK G V+ +  VFN++   +VV+++
Sbjct: 186 CFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWS 245

Query: 301 SMIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +MI   AK G    +L+LF E++  ++ + PN VT V VL AC+    +++G      + 
Sbjct: 246 AMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYIL 305

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           RK G+       + +V M  R G+L+   ++    Q+D     + W +L+S+  +HG
Sbjct: 306 RK-GLDSILPVISALVTMYARCGKLELGQRVFD--QMD-KRDVVSWNSLISSYGVHG 358


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/551 (39%), Positives = 334/551 (60%), Gaps = 8/551 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L +  +   LI  YV       AR+LFDE+   +VVS+ +++AGY+  G+ + AL  F +
Sbjct: 190 LRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTR 249

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M    V PN+ T  +V+ AC  L  L  GK I + +   GF  NL + ++LVDMY KC +
Sbjct: 250 MQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGE 309

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  AR++FD M  ++V+ W ++I  +   +   EAL +F E   +    PN     +V+ 
Sbjct: 310 IGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF-EVMLRENVTPNDVTFLAVLP 368

Query: 239 ACASLGRLVSGKVAHGVVVR----SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           ACASLG L  GK  H  + +    +G   N  + ++++ MYAKCG V  +++VF  + + 
Sbjct: 369 ACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSR 428

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           S+ ++ +MI G A  G    +L LF EMI+ G +P+D+TFVGVL AC+ +G V+ G ++ 
Sbjct: 429 SLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYF 488

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            SM + YGI P  +HY C++D+L R+G+ DEA  L  +++++PDG   +WG+LL+A R+H
Sbjct: 489 SSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGA--IWGSLLNACRIH 546

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G+V+     + +L E   + + AYV LSN YA AG W++V  +R+++   G+ K PGC+ 
Sbjct: 547 GQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTS 606

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +EI    + F  G+    +   +  +L E++R ++E G+V   T  V  D+++E +E  +
Sbjct: 607 IEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFV-PDTSEVLYDMDEEWKEGAL 665

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSE+LA+AFGLIS   G TIRI+KNLR+CR+CH   KLIS I  R+ + RD NRFHHF
Sbjct: 666 TQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHF 725

Query: 595 RNGSCSCGDFW 605
           ++G CSC D W
Sbjct: 726 KDGFCSCNDRW 736



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 214/466 (45%), Gaps = 43/466 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKT-QVARQLFDEM--LEPN 92
           L +C  + SL  +HS I+KSG  +  F  + LI  C +   +    A  LF  +    PN
Sbjct: 32  LAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPN 91

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +  + +L+  +     P  +L LF +ML + ++PN  TF ++ K+C+        KQ+H 
Sbjct: 92  IFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHA 151

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCND-------------------------------VDG 181
           H        +  V +SL+ MY +  +                               VD 
Sbjct: 152 HALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDD 211

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           ARR+FD +  ++VVSW ++I  + Q+ +  EAL  F     ++   PNQ  + SV++AC 
Sbjct: 212 ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ-EADVSPNQSTMVSVLSACG 270

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            L  L  GK     V   G   N  + +ALVDMY+KCG +  + K+F+ + +  V+ + +
Sbjct: 271 HLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNT 330

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI---QHLDSMY 358
           MI G     L   +L LF  M+   + PNDVTF+ VL AC+  G +D G     ++D   
Sbjct: 331 MIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNL 390

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           +  G + +   +T ++ M  + G ++ A ++ +S+          W  ++S   ++G  +
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS---WNAMISGLAMNGHAE 447

Query: 419 IAVEASNQLIESNQQVAN-AYVTLSNTYALAGEWENVHSLRSEMKR 463
            A+    ++I    Q  +  +V + +    AG  E  H   S M +
Sbjct: 448 RALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNK 493


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 337/558 (60%), Gaps = 4/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   LK  +  + F    L+  Y +  +   A++LF+EM + +++ ++ ++A Y    
Sbjct: 258 SVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSD 317

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + AL LF +M    V PN FTFA+V++AC+    L  GKQIH+ +  FG   N+ V +
Sbjct: 318 RSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSN 377

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +++D+Y KC +++ + ++F+ +  RN V+W +IIV + Q   G  A+ +F     +   +
Sbjct: 378 AIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHM-LEHDMQ 436

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P +   +SV+ A ASL  L  G   H + +++    + VVA++L+DMYAKCG +N +   
Sbjct: 437 PTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLT 496

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F++++    V++ +MI G + +G+   +L+LF+ M     KPN +TFVGVL ACS++GL+
Sbjct: 497 FDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLL 556

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            +G  H +SM + Y I P  +HYTC+V +LGR GR DEA KL   I   P    ++W  L
Sbjct: 557 YKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQP--SVMVWRAL 614

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A  +H +VD+    +  ++E        +V LSN YA AG W+NV  +R  M++  + 
Sbjct: 615 LGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVR 674

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SWVE +   + F  G+        + ++L  L +K ++ GYV      V +DV+D
Sbjct: 675 KEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYV-PDCNAVLLDVQD 733

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +E  + +HSERLALA+GLI  P   +IRI+KNLR+C DCH V KLIS +V+R+ V+RD
Sbjct: 734 DEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRD 793

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFHHFR+G CSCGD+W
Sbjct: 794 INRFHHFRHGVCSCGDYW 811



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 201/408 (49%), Gaps = 8/408 (1%)

Query: 28  HTKAHFIQQL-QECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           H+ AH +QQ+ +     I+   +H  ILK G   + F  N L+N YV+    Q A +LFD
Sbjct: 35  HSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFD 94

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           EM + N +S+ +L  GY    Q   AL    ++       N F F T++K    +     
Sbjct: 95  EMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHL 154

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
              +H  +   G   +  V ++L+D Y    +VD AR VFD + C+++VSWT ++  +A+
Sbjct: 155 CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAE 214

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    E+L++F +       +PN   ++  + +C  L     GK  HG  ++ GC  +D+
Sbjct: 215 NCFYEESLQLFNQMRIMGY-KPNNFTISGALKSCLGLEAFNVGKSVHGCALK-GCYDHDL 272

Query: 267 -VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V  AL+++YAK G +  + ++F  +    ++ ++ MI   A+    + +LDLF  M   
Sbjct: 273 FVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
            + PN+ TF  VL AC+ S  +D G Q + S   K+G+  +      ++D+  + G ++ 
Sbjct: 333 SVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIEN 391

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           + KL + +   PD   + W T++      G  + A+     ++E + Q
Sbjct: 392 SMKLFEEL---PDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQ 436


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/558 (39%), Positives = 334/558 (59%), Gaps = 10/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  +  +G+   TF +N LIN YV+      AR LFDEM + NVVS+T++++ Y N   
Sbjct: 38  VHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNL 97

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL     ML   V PN +T+++V++AC  L +L   +Q+H  I   G + ++ V S+
Sbjct: 98  NHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSA 154

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y K  +   A  VF+ M   ++V W SII   AQN+ G E L +++    ++    
Sbjct: 155 LIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMK-RADFVA 213

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q  L SV+ AC  L  L  G+  H  V++   +   ++ +AL+DMY KCGS+  ++ +F
Sbjct: 214 DQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDL--ILNNALLDMYCKCGSLEDANLLF 271

Query: 289 NRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
            R+ +   V+++++MI G A+ G    +L LF  M S+G KPN +T +GVL ACSH+GLV
Sbjct: 272 TRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLV 331

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G  +  SM   +GI P  +HY C++D+LGR G+LDEA KL   +  +PD   + W  L
Sbjct: 332 NDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDA--VTWRIL 389

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+H  VD+A+ A+ ++++ +   A  Y+ LSN YA + +WE+V  +R +M+  G+ 
Sbjct: 390 LGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVK 449

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K+PGCSW+E+  Q +AF  G+    R  E+   L +L +++   GYV   T  V  D+E 
Sbjct: 450 KDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYV-PDTNFVLQDLEG 508

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E  E+ +  HSE+LA+ FGL+S+P   TI I KNLR+C DCH   KL+S +  R  V+RD
Sbjct: 509 EQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRD 568

Query: 588 VNRFHHFRNGSCSCGDFW 605
             R+HHFR G CSCGD+W
Sbjct: 569 PIRYHHFRGGVCSCGDYW 586



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 151/296 (51%), Gaps = 11/296 (3%)

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
            + M  N +  +  T++ +IK C +   +   + +H H+ + G++    + ++L++MY K
Sbjct: 4   MEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVK 63

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
              +D AR +FD M  RNVVSWT++I A++ +   H+AL+ F     +   RPN +  +S
Sbjct: 64  FGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALD-FLILMLREGVRPNMYTYSS 122

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+ AC  L  L   +  HG +++ G E +  V SAL+D Y+K G  + +  VFN +    
Sbjct: 123 VLRACDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGD 179

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HL 354
           +V + S+I G A+   G  +L L+  M       +  T   VL AC+   L++ G Q H+
Sbjct: 180 LVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHV 239

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
             +     +I +      ++DM  + G L++A  L   +  + D   + W T+++ 
Sbjct: 240 HVLKYDQDLILN----NALLDMYCKCGSLEDANLLFTRMMTEKD--VISWSTMIAG 289



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 155/294 (52%), Gaps = 10/294 (3%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+  R + +T   +   L+ C  L++L  +H  ILK G  S+ F  + LI+ Y +L +
Sbjct: 108 MLREGVRPNMYT---YSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGE 164

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              A  +F+EM+  ++V + S++ G+         L L+++M       ++ T  +V++A
Sbjct: 165 QHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRA 224

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD-LMGCRNVVS 196
           C+ LA L  G+Q+H H+    +  +L++ ++L+DMY KC  ++ A  +F  +M  ++V+S
Sbjct: 225 CTGLALLELGRQVHVHV--LKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVIS 282

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGV 255
           W+++I   AQN    +AL++F     +   +PN   +  V+ AC+  G +  G      +
Sbjct: 283 WSTMIAGLAQNGFSADALKLFEAMKSKG-PKPNYITILGVLFACSHAGLVNDGWYYFQSM 341

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVGAAK 308
               G +        ++D+  + G ++ + K+ + +++ P  VT+  +++GA +
Sbjct: 342 KEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTW-RILLGACR 394


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 340/577 (58%), Gaps = 39/577 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GN 122
           + N +++ Y    +  +A  +F+ M E ++VS+ +++AGY   G   +AL  F +ML  +
Sbjct: 231 SWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTAS 290

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + P+EFT  +V+ AC+ L  L  GKQ+H++I   G  Y+  + ++L+  Y K   V+ A
Sbjct: 291 SMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETA 350

Query: 183 RR---------------------------------VFDLMGCRNVVSWTSIIVAHAQNAQ 209
           RR                                 VFD+M  R+V++WT++IV + QN Q
Sbjct: 351 RRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQ 410

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+E+FR    +S   PN H LA+V++ACASL  L  GK  H   +RS  E +  V++
Sbjct: 411 NDEAMELFRSM-IRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSN 469

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           A++ +YA+ GSV  + +VF++I      VT+TSMIV  A++GLG  ++ LF EM+  G+K
Sbjct: 470 AIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVK 529

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VT++GV  AC+H+G +D+G ++ + M  ++GI+P+  HY C+VD+L R G L EA++
Sbjct: 530 PDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHE 589

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + V PD   ++WG+LL+A R+    D+A  A+ +L+  +   + AY  L+N Y+  
Sbjct: 590 FIQRMPVAPD--TVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSAC 647

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W +   +    K   + KE G SW  ++ + + F A + L  +   +     E+  ++
Sbjct: 648 GRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEI 707

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K+ G+V      V  DV+DE +EE++  HSE+LA+AFGLIS P+  T+RIMKNLR+C DC
Sbjct: 708 KKAGFVPDLNS-VLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDC 766

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS +V+R+ +VRD  RFHHFR+G CSC D+W
Sbjct: 767 HTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 161/356 (45%), Gaps = 64/356 (17%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N FT N L++ Y +  +   AR +F +M E + VS+T ++ G    G+   A+  F  M+
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
           G  + P++F    V+ +C+       G+++H+ +   G    + V +S++ MYGKC D +
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 181 GARRVFDLMGC-------------------------------RNVVSWTSIIVAHAQNAQ 209
            AR VF+ M                                 R++VSW +II  + QN  
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGL 275

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
              AL+ F      S   P++  + SV++ACA+L  L  GK  H  ++R+G  ++  + +
Sbjct: 276 DDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335

Query: 270 ALVDMYAKCGSVNYSDK---------------------------------VFNRISNPSV 296
           AL+  YAK GSV  + +                                 VF+ ++N  V
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           + +T+MIVG  + G    +++LF  MI  G +PN  T   VL AC+    +  G Q
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ 451



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 3/190 (1%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
           S+ R     + HT A  +       +L     +H   ++S    +    N +I  Y R  
Sbjct: 420 SMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSG 479

Query: 77  KTQVARQLFDEM-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
              +AR++FD++      V++TS++      G  + A++LF++ML   V P+  T+  V 
Sbjct: 480 SVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVF 539

Query: 136 KACSMLADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRN 193
            AC+    +  GK+ +   +   G    +   + +VD+  +   +  A      M    +
Sbjct: 540 SACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPD 599

Query: 194 VVSWTSIIVA 203
            V W S++ A
Sbjct: 600 TVVWGSLLAA 609


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 337/588 (57%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY------------ 96
           VH +I++ GF +  FT + L++ Y ++     A+++FDEM+  NVV Y            
Sbjct: 171 VHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKM 230

Query: 97  -------------------TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                              T+++ G    G    AL +F++M    V  +++TF +++ A
Sbjct: 231 VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTA 290

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  LA    GKQIH +     +  N+ V S+LVDMY KC  +  A  VF  M C+N++SW
Sbjct: 291 CGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISW 350

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T++IV + QN  G EA+ +F E       +PN   L SVI++CA+L  L  G   H + +
Sbjct: 351 TAMIVGYGQNGCGEEAVRVFSEMQTDG-IKPNDFTLGSVISSCANLASLEEGAQFHCMAL 409

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            SG      V+SALV +Y KCGS+  + ++F+ +     V+YT+++ G A++G  + ++D
Sbjct: 410 VSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETID 469

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF +M+ +G+KPN VTF+GVL ACS SGLV++G  +  SM + +GI+    HYTC++D+ 
Sbjct: 470 LFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLY 529

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R+GRL EA +  + +   PD   + W TLLSA RL G ++I   A+  L++++ Q   +
Sbjct: 530 SRSGRLKEAEEFIRQMPRCPDA--IGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPAS 587

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV L + +A  GEW  V  LR  M+   + KEPGCSW++ +++ + F A +        +
Sbjct: 588 YVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTI 647

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
              L+ L  KM E GY    +  V  DV D  +  ++  HSE+LA+AFGLI +P+ + IR
Sbjct: 648 YEKLQWLNSKMAEEGYKPDVSS-VLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIR 706

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR+C DCH+  K IS I  RD +VRD  RFH F NG CSCGDFW
Sbjct: 707 VVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 196/413 (47%), Gaps = 72/413 (17%)

Query: 47  ASVHSEILKS-GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV------------ 93
            +VH  +L++      T+ LNHL+  Y R  +  +AR+LFD M +PN+            
Sbjct: 29  GAVHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAH 88

Query: 94  -------------------VSYTSLMAGYINMGQPQIALLLFQKML-------GNLVWPN 127
                              VSY +L+AG+   G P  A   ++ +L       G  V P+
Sbjct: 89  ARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPS 148

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
             T + ++ A S L D   G+Q+H  I   GF       S LVDMY K   +  A+RVFD
Sbjct: 149 RITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFD 208

Query: 188 LMGCRNVV-------------------------------SWTSIIVAHAQNAQGHEALEM 216
            M  +NVV                               +WT+++    QN    EAL++
Sbjct: 209 EMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDV 268

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           FR    +     +Q+   S++ AC +L     GK  H   +R+  + N  V SALVDMY+
Sbjct: 269 FRRMRAEGVG-IDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYS 327

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KC S+  ++ VF R++  +++++T+MIVG  + G G  ++ +F+EM + GIKPND T   
Sbjct: 328 KCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGS 387

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           V+ +C++   ++EG Q    M    G+ P     + +V + G+ G +++A++L
Sbjct: 388 VISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRL 439



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  C +L SL   A  H   L SG        + L+  Y +    + A +LFDEM   + 
Sbjct: 389 ISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQ 448

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHT 152
           VSYT+L++GY   G+ +  + LF+KML   V PN  TF  V+ ACS    +  G    H+
Sbjct: 449 VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHS 508

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVA 203
             +  G        + ++D+Y +   +  A      M  C + + W +++ A
Sbjct: 509 MQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSA 560


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 341/563 (60%), Gaps = 10/563 (1%)

Query: 49  VHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H   ++SG F S+ F+ + L++ Y    +   AR+ FDE+  PN V  T++ +GY+   
Sbjct: 111 LHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNN 170

Query: 108 QPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
               +L LF+K++  G+    +E        A + + D      +H  +   G   +  V
Sbjct: 171 LVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGV 230

Query: 166 CSSLVDMYGKCN--DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-FNY 222
            ++++D Y K    D+  AR+VFD M  ++VVSW S+I  +AQN    +AL ++R+  N 
Sbjct: 231 VNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKMLNV 289

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
               + N   L++++ ACA  G + +GK  H  VVR G E N  V +++VDMY+KCG V 
Sbjct: 290 SGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVE 349

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + K F +I   +++++++MI G   +G G+ +LD+FNEM   G  PN +TF+ VL ACS
Sbjct: 350 MARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACS 409

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GL+D+G    ++M +++GI P  +HY C+VD+LGR G LDEAY L K ++V PD    
Sbjct: 410 HAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAA-- 467

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LLSA R+H  V++A  ++ +L E +      YV LSN YA AG W++V  +R  +K
Sbjct: 468 IWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVK 527

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             GI K PG S VE++ +T+ FY G+    +  E+ S L +L  KM+E GYV   TG V 
Sbjct: 528 TRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYV-PNTGSVL 586

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+++E +   + +HSE+LA+AF L++   G  I ++KNLR+C DCH   KLI+ I +R+
Sbjct: 587 HDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQRE 646

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD+ RFHHF++GSCSCGD+W
Sbjct: 647 IIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 7/241 (2%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVVSYTSLMAGYI 104
           +S+H+ ++K+G   +   +N +++ Y +  +  +  AR++FD M E +VVS+ S++A Y 
Sbjct: 213 SSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYA 271

Query: 105 NMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
             G    AL L++KML     +  N  T + ++ AC+    + TGK IH  +   G + N
Sbjct: 272 QNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEEN 331

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V +S+VDMY KC  V+ AR+ F  +  +N++SW+++I  +  +  G EAL++F E   
Sbjct: 332 VYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEM-C 390

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVV-VRSGCEFNDVVASALVDMYAKCGSV 281
           +S   PN     SV+ AC+  G L  G+  +  +  R G E        +VD+  + G +
Sbjct: 391 RSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCL 450

Query: 282 N 282
           +
Sbjct: 451 D 451


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/547 (37%), Positives = 332/547 (60%), Gaps = 16/547 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I  Y +  K   ARQLFDE    +V ++T++++GYI     + A  LF KM 
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCND 178
                 NE ++       +MLA  + G+++    E F      N+   ++++  Y +C  
Sbjct: 309 ER----NEVSWN------AMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  A+ +FD M  R+ VSW ++I  ++Q+    EAL +F +   +   R N+   +S ++
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREG-GRLNRSSFSSALS 417

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +  L  GK  HG +V+ G E    V +AL+ MY KCGS+  ++ +F  ++   +V+
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 477

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G G  +L  F  M   G+KP+D T V VL ACSH+GLVD+G Q+  +M 
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG++P+++HY C+VD+LGR G L++A+ L K++  +PD    +WGTLL ASR+HG  +
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAA--IWGTLLGASRVHGNTE 595

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A++++     + +  YV LSN YA +G W +V  LR  M+  G+ K PG SW+EI+
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++T+ F  G+       E+ + L EL+ +MK+ GYV  KT +V  DVE+E +E +V  HS
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYV-SKTSVVLHDVEEEEKERMVRYHS 714

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           ERLA+A+G++ +  G  IR++KNLR+C DCH+  K ++ I  R  ++RD NRFHHF++GS
Sbjct: 715 ERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGS 774

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 775 CSCGDYW 781



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 173/391 (44%), Gaps = 41/391 (10%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           ++ H  A+F   L+         S    +LK G  S+    N  I+ Y+R  +   A ++
Sbjct: 29  NNAHGAANF-HSLKRATQTQIQKSQTKPLLKCG-DSDIKEWNVAISSYMRTGRCNEALRV 86

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           F  M   + VSY  +++GY+  G+ ++A  LF +M      P       ++    M+   
Sbjct: 87  FKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM------PER----DLVSWNVMIKGY 136

Query: 145 ITGKQIHTHIETFGFQYNLVVCS--SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           +  + +    E F       VCS  +++  Y +   VD AR VFD M  +N VSW +++ 
Sbjct: 137 VRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLS 196

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
           A+ QN++  EA  +F+     SR+       A V   C   G +   K+           
Sbjct: 197 AYVQNSKMEEACMLFK-----SREN-----WALVSWNCLLGGFVKKKKIVEARQFFDSMN 246

Query: 263 FNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             DVV+ + ++  YA+ G ++ + ++F+      V T+T+M+ G  +  +   + +LF++
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 306

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP--DAKHYTCVVDMLGR 379
           M  R    N+V++  +L     +G V    + ++     + ++P  +   +  ++    +
Sbjct: 307 MPER----NEVSWNAML-----AGYVQG--ERMEMAKELFDVMPCRNVSTWNTMITGYAQ 355

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            G++ EA  L   +   P   P+ W  +++ 
Sbjct: 356 CGKISEAKNLFDKM---PKRDPVSWAAMIAG 383



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 29  TKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C  +++L     +H  ++K G+ +  F  N L+  Y +    + A  LF
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 467

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
            EM   ++VS+ +++AGY   G  ++AL  F+ M    + P++ T   V+ ACS    + 
Sbjct: 468 KEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 527

Query: 146 TGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
            G+Q  +T  + +G   N    + +VD+ G+   ++ A  +   M
Sbjct: 528 KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/556 (39%), Positives = 334/556 (60%), Gaps = 37/556 (6%)

Query: 84  LFDEMLE-PNVVSYTSLMAGYI--NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           +F+  L  PN+ +Y +L+  +   N     I+    Q +L N   P+E+TF +V+KAC+ 
Sbjct: 80  IFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAG 139

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK--CN--------------------- 177
           LA ++ G+++H  +  +G + NL V +SLVD+Y K  CN                     
Sbjct: 140 LAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTL 199

Query: 178 --------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
                    VD AR VFD M  +N+VSW+++I  +A+N +  +A+E+FR+  ++    PN
Sbjct: 200 ISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPN 259

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L SV++ACA LG L  GK  H  + R+  E    + +AL DMYAKCG V  +  VF+
Sbjct: 260 DVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFH 319

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +    V++++ +I+G A YG    + + F EMI  G++PND++F+G+L AC+H+GLVD+
Sbjct: 320 EMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDK 379

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G+++ D M + YGI P  +HY CVVD+L R GRLD+A  L  S+ + P+   ++WG LL 
Sbjct: 380 GLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPN--VIVWGALLG 437

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
             R++   +       +++E +   + + V L+N YA  G  ++  S R  M+     K 
Sbjct: 438 GCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKT 497

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PGCSW+EI +  Y F+ G++   +   + S++REL+ KMK  GY   KT LV  ++++E 
Sbjct: 498 PGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGY-KPKTDLVIHNIDEEE 556

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +E+ +  HSE+LALAFGLI+  +G TIRI+KNLR+C DCHD  K+IS IVER+ VVRD +
Sbjct: 557 KEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRS 616

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF++G CSC D+W
Sbjct: 617 RFHHFKDGKCSCNDYW 632



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 143/325 (44%), Gaps = 60/325 (18%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L  +     VH  + K G  SN F  N L++ Y ++    +A++LFDEM+
Sbjct: 130 FTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMV 189

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLV-W---------------------- 125
             +VVS+ +L++GY   G    A ++F  M+  NLV W                      
Sbjct: 190 VRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQ 249

Query: 126 --------PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
                   PN+ T  +V+ AC+ L  L  GK IH  I     +  L + ++L DMY KC 
Sbjct: 250 MQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCG 309

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            V  A+ VF  M  R+V+SW+ II+  A     +EA   F E   +    PN      ++
Sbjct: 310 CVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEM-IEDGLEPNDISFMGLL 368

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASA------------LVDMYAKCGSVNYSD 285
            AC            H  +V  G E+ D++               +VD+ ++ G ++ ++
Sbjct: 369 TAC-----------THAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 417

Query: 286 KVFNRIS-NPSVVTYTSMIVGAAKY 309
            + N +   P+V+ + +++ G   Y
Sbjct: 418 SLINSMPMQPNVIVWGALLGGCRIY 442



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 13/222 (5%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            +  L  C HL +L     +H  I ++      F  N L + Y +      A+ +F EM 
Sbjct: 263 LVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMH 322

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E +V+S++ ++ G    G    A   F +M+ + + PN+ +F  ++ AC+    +  G +
Sbjct: 323 ERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLE 382

Query: 150 IHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---H 204
               + + +G    +     +VD+  +   +D A  + + M  + NV+ W +++     +
Sbjct: 383 YFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIY 442

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
               +G   +    E      D  +   L  + N  AS+GRL
Sbjct: 443 KDAERGERVVWRILEL-----DSNHSGSLVYLANVYASMGRL 479


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 349/571 (61%), Gaps = 5/571 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLI-NCYVR-LKKTQVARQLFDEMLEPNVV 94
           L++C ++      H+ ILK G   ++F  ++L+  C +        A  +F +M E    
Sbjct: 38  LKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSF 97

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            + ++M G++     + AL+ +++M    V P+ FT+ T++KAC+ L  +  G Q+H HI
Sbjct: 98  QFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHI 157

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              G + ++ V +SL+ MYGKC ++     VF+ M  R+V SW+++I AHA      + L
Sbjct: 158 LKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCL 217

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
            +  + + +   R  + +L SV++AC  LG L  G+  HG ++R+    N +V ++L++M
Sbjct: 218 RLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEM 277

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCGS+     +F +++  + ++Y+ MI G A +G GR  L +F EM+ +G++P+D+ +
Sbjct: 278 YLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVY 337

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           VGVL+ACSH+GLV EG+Q  + M  ++GI P  +HY C+VD++GR G++DEA +L KS+ 
Sbjct: 338 VGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMP 397

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
           ++P+   +LW +LLSAS++H  +     A+ QL + + Q A+ YV LSN YA A  WE+V
Sbjct: 398 MEPN--DVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDV 455

Query: 455 HSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYV 514
              R+ M   G+ + PG S VE++ + + F + +A   +   V  +L ++E ++K  GY 
Sbjct: 456 AKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGY- 514

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
              T  V  DV++E +++ +  HS++LA+A+ LI   +G  IRI++NLRMC DCH   KL
Sbjct: 515 SPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKL 574

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS I +R+  VRD +RFHHF++G+CSC D+W
Sbjct: 575 ISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/597 (36%), Positives = 340/597 (56%), Gaps = 32/597 (5%)

Query: 37  LQECKHLISL---ASVHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C HL  L     +H+ +L++   + N+F  + L++ Y   ++ +  R++FD +L   
Sbjct: 304 LPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR 363

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           +  + ++++GY   G  + AL+LF +M+    + PN  T A+V+ AC         + IH
Sbjct: 364 IELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIH 423

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            +    GF+ +  V ++L+DMY +   +D +  +FD M  R+ VSW ++I  +  + +  
Sbjct: 424 GYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYS 483

Query: 212 EALEMFREFNYQSRD----------------RPNQHMLASVINACASLGRLVSGKVAHGV 255
            AL +  E                       +PN   L +V+  CA+L  +  GK  H  
Sbjct: 484 NALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAY 543

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
            +R+    +  V SALVDMYAKCG +N S +VFN + N +V+T+  +I+    +G G  +
Sbjct: 544 AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEA 603

Query: 316 LDLFNEMIS---RG--IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
           L+LF  M++   RG   KPN+VTF+ V  ACSHSGL+ EG+     M   +G+ P + HY
Sbjct: 604 LELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHY 663

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            CVVD+LGR G+L+EAY+L  ++  + D  G    W +LL A R+H  V++   A+  L+
Sbjct: 664 ACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA---WSSLLGACRIHQNVELGEVAAKNLL 720

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
                VA+ YV LSN Y+ AG W     +R  M++ G+ KEPGCSW+E RD+ + F AG+
Sbjct: 721 HLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGD 780

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
               +  ++   L  L  KM++ GYV   T  V  +V+++ +E ++  HSE+LA+AFG++
Sbjct: 781 VSHPQSEQLHGFLETLSEKMRKEGYVP-DTSCVLHNVDEDEKENLLCGHSEKLAIAFGIL 839

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           + P G TIR+ KNLR+C DCH   K IS I+ER+ +VRDV RFHHF+ G+CSCGD+W
Sbjct: 840 NTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 188/385 (48%), Gaps = 22/385 (5%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           TFT N L+  Y +L +   ++ LF+  ++ ++VS+ ++++ +    +   AL  F+ M+ 
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVD 180
             V  +  T A+V+ ACS L  L  GK+IH ++        N  V S+LVDMY  C  V+
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
             RRVFD +  R +  W ++I  +A+N    +AL +F E    +   PN   +ASV+ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
                  + +  HG  V+ G + +  V +AL+DMY++ G ++ S+ +F+ +     V++ 
Sbjct: 411 VHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWN 470

Query: 301 SMIVGAAKYGLGRFSLDLFNEM-----------------ISRGIKPNDVTFVGVLHACSH 343
           +MI G    G    +L L +EM                      KPN +T + VL  C+ 
Sbjct: 471 TMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAA 530

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
              + +G + + +   +  +  D    + +VDM  + G L+ + ++   +   P+   + 
Sbjct: 531 LAAIAKG-KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEM---PNKNVIT 586

Query: 404 WGTLLSASRLHGRVDIAVEASNQLI 428
           W  L+ A  +HG+ + A+E    ++
Sbjct: 587 WNVLIMACGMHGKGEEALELFKNMV 611



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 189/382 (49%), Gaps = 18/382 (4%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+  +K G+ S++ T+ N L+N Y +        ++FD + + + VS+ S +A      
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFE 173

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA---DLITGKQIHTHIETFGFQYNLV 164
           + + AL  F+ M    +  + FT  +V  ACS L     L  GKQ+H +    G Q    
Sbjct: 174 KWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFT 233

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
             ++L+ MY K   VD ++ +F+    R++VSW ++I + +Q+ +  EAL  FR    + 
Sbjct: 234 N-NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG 292

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF-NDVVASALVDMYAKCGSVNY 283
            +  +   +ASV+ AC+ L RL  GK  H  V+R+     N  V SALVDMY  C  V  
Sbjct: 293 VEL-DGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACS 342
             +VF+ I    +  + +MI G A+ GL   +L LF EMI   G+ PN  T   V+ AC 
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACV 411

Query: 343 HSGLVDEGIQHLDSMYR---KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           H     E   + +S++    K G   D      ++DM  R G++D +  +  S++V    
Sbjct: 412 HC----EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDR- 466

Query: 400 GPLLWGTLLSASRLHGRVDIAV 421
             + W T+++   L GR   A+
Sbjct: 467 --VSWNTMITGYVLSGRYSNAL 486



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 134/255 (52%), Gaps = 6/255 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCNDVDGARR 184
           P+ F F  V+KA S L DL TG+QIH     FG+   ++ V ++LV+MYGKC  +    +
Sbjct: 90  PDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCK 149

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD +  R+ VSW S I A  +  +  +ALE FR    ++ +  +   L SV  AC++LG
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMEL-SSFTLVSVALACSNLG 208

Query: 245 ---RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
               L  GK  HG  +R G +      +AL+ MYAK G V+ S  +F    +  +V++ +
Sbjct: 209 VMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI   ++      +L  F  M+  G++ + VT   VL ACSH   +D G +    + R  
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN 327

Query: 362 GIIPDAKHYTCVVDM 376
            +I ++   + +VDM
Sbjct: 328 DLIENSFVGSALVDM 342



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 21/242 (8%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +     C+   +  S+H   +K GF  + +  N L++ Y R+ K  ++  +FD M
Sbjct: 402 TMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSM 461

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKM-----------------LGNLVWPNEFTF 131
              + VS+ +++ GY+  G+   AL+L  +M                  G    PN  T 
Sbjct: 462 EVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITL 521

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
            TV+  C+ LA +  GK+IH +        ++ V S+LVDMY KC  ++ +RRVF+ M  
Sbjct: 522 MTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 581

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFR----EFNYQSRDRPNQHMLASVINACASLGRLV 247
           +NV++W  +I+A   + +G EALE+F+    E       +PN+    +V  AC+  G + 
Sbjct: 582 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 641

Query: 248 SG 249
            G
Sbjct: 642 EG 643



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+  SW   + +  ++    EA+  + E    S  RP+     +V+ A + L  L +G+ 
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTV-SGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 252 AHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
            H   V+ G   + V VA+ LV+MY KCG +    KVF+RI++   V++ S I    ++ 
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFE 173

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI-IPDAKH 369
               +L+ F  M    ++ +  T V V  ACS+ G++  G++ L      Y + + D K 
Sbjct: 174 KWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM-HGLR-LGKQLHGYSLRVGDQKT 231

Query: 370 YT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           +T   ++ M  + GR+D++  L +S  VD D   + W T++S+
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESF-VDRDM--VSWNTMISS 271


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 329/565 (58%), Gaps = 27/565 (4%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK----- 118
           + N L+  YV+      ARQLFD M   +V+S+ ++++GY  +G    A  LF +     
Sbjct: 203 SWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRD 262

Query: 119 ------MLGNLV----------WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ-- 160
                 M+   V          + +E      I   +MLA  +  K++    E F     
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            N+   ++++  YG+   +  AR++FD+M  R+ VSW +II  +AQN    EAL MF E 
Sbjct: 323 RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
             +  +  N+   +  ++ CA +  L  GK  HG VV++G E    V +AL+ MY KCGS
Sbjct: 383 K-RDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
            + ++ VF  I    VV++ +MI G A++G GR +L LF  M   G+KP+++T VGVL A
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSHSGL+D G ++  SM R Y + P +KHYTC++D+LGR GRL+EA  L +++  DP  G
Sbjct: 502 CSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDP--G 559

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
              WG LL ASR+HG  ++  +A+  + +   Q +  YV LSN YA +G W +V  +RS+
Sbjct: 560 AASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSK 619

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M+  G+ K  G SWVE++++ + F  G+        + + L EL+ KM+  GYV   T L
Sbjct: 620 MREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYV-SSTKL 678

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  DVE+E +E ++  HSE+LA+AFG+++IP G  IR+MKNLR+C+DCH+  K IS IV 
Sbjct: 679 VLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVG 738

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  ++RD +RFHHF  G CSCGD+W
Sbjct: 739 RLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 108/201 (53%), Gaps = 1/201 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +  E+ ++    N  + N +I  Y +      AR+LFD M + + VS+ ++++GY   G 
Sbjct: 312 IAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGH 371

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F +M  +    N  TF+  +  C+ +A L  GKQ+H  +   GF+    V ++
Sbjct: 372 YEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNA 431

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC   D A  VF+ +  ++VVSW ++I  +A++  G +AL +F     ++  +P
Sbjct: 432 LLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMK-KAGVKP 490

Query: 229 NQHMLASVINACASLGRLVSG 249
           ++  +  V++AC+  G +  G
Sbjct: 491 DEITMVGVLSACSHSGLIDRG 511



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 182/436 (41%), Gaps = 56/436 (12%)

Query: 22  NKRSSCHTK-AHFIQQLQECKHLISLASVHSEILKSGFLSNT-----------------F 63
           NK  S H +  H    L+    +   +SV    + SG+L N                  F
Sbjct: 50  NKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLF 109

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           + N ++  YVR ++   A +LFD M + +VVS+ ++++GY   G    A  +F KM    
Sbjct: 110 SWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM---- 165

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN--LVVCSSLVDMYGKCNDVDG 181
             P+       I    +LA  +   ++      F  Q N  L+  + L+  Y K N +  
Sbjct: 166 --PHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGD 219

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE------FNYQSR---------- 225
           AR++FD M  R+V+SW ++I  +AQ     +A  +F E      F + +           
Sbjct: 220 ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMV 279

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF------NDVVASALVDMYAKCG 279
           D   ++     +    S   +++G V +  +V +G  F      N    + ++  Y + G
Sbjct: 280 DEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNG 339

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            +  + K+F+ +     V++ ++I G A+ G    +L++F EM   G   N  TF   L 
Sbjct: 340 GIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALS 399

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
            C+    ++ G Q +     K G          ++ M  + G  DEA  + + I+   + 
Sbjct: 400 TCADIAALELGKQ-VHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE---EK 455

Query: 400 GPLLWGTLLSASRLHG 415
             + W T+++    HG
Sbjct: 456 DVVSWNTMIAGYARHG 471



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 170/402 (42%), Gaps = 63/402 (15%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           T N  I+ ++R      A ++F+ M   + VSY ++++GY+   +  +A  LF KM    
Sbjct: 48  TWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM---- 103

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
             P    F+  +        ++TG                         Y +   +  A 
Sbjct: 104 --PERDLFSWNV--------MLTG-------------------------YVRNRRLGEAH 128

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           ++FDLM  ++VVSW +++  +AQN    EA E+F +  +++    N  + A V N     
Sbjct: 129 KLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHN----- 183

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           GRL   +     +  S   +  +  + L+  Y K   +  + ++F+R+    V+++ +MI
Sbjct: 184 GRLKEAR----RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMI 239

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
            G A+ G    +  LFNE   R +     T+  ++     +G+VDE  ++ D M  K  I
Sbjct: 240 SGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPVKNEI 295

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
             +A        ML    +  +     +  +  P      W T+++    +G +  A + 
Sbjct: 296 SYNA--------MLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKL 347

Query: 424 SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            + +    Q+   ++  + + YA  G +E   ++  EMKR G
Sbjct: 348 FDMM---PQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 334/558 (59%), Gaps = 4/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH    K+ +L   F    LI+ Y++      A Q+F+EM + +V+ ++ ++A Y    
Sbjct: 267 AVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSE 326

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           Q + A+ +F +M   LV PN+FT A++++AC+ L DL  G QIH H+   G   N+ V +
Sbjct: 327 QSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSN 386

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++ + ++F        VSW ++IV + Q   G +AL +F++   + + +
Sbjct: 387 ALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM-LECQVQ 445

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             +   +SV+ ACA +  L  G   H + V++  + N VV +AL+DMYAKCG++  +  V
Sbjct: 446 GTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLV 505

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +     V++ +MI G + +GL   +L  F  M+    KP+ VTFVG+L ACS++GL+
Sbjct: 506 FDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLL 565

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           D G  +  SM  +Y I P A+HYTC+V +LGR+G LD+A KL   I  +P    ++W  L
Sbjct: 566 DRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEP--SVMVWRAL 623

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           LSA  +H  V++   ++ +++E   +    +V LSN YA A  W NV S+R+ MKR GI 
Sbjct: 624 LSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIR 683

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SW+E + + + F  G+        +  +L  L  K +  GYV   +  V +DVED
Sbjct: 684 KEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSS-VLLDVED 742

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             +E+ + +HSERLALA+GLI  P    +RI+KNLR+C DCH   KLIS IV+RD ++RD
Sbjct: 743 VDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRD 802

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFHHF  G CSCGD+W
Sbjct: 803 MNRFHHFHEGICSCGDYW 820



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 210/387 (54%), Gaps = 13/387 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH+ + K GF S+ F    LI+CY      + ARQ+FD +   ++VS+T ++A Y+   
Sbjct: 166 SVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENE 225

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + +L LF +M      PN FTFA+V+KAC  L     GK +H       +   L V  
Sbjct: 226 CFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGV 285

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
            L+D+Y K  DVD A +VF+ M   +V+ W+ +I  +AQ+ Q  EA+EMF     +    
Sbjct: 286 ELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR-RGLVL 344

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PNQ  LAS++ ACASL  L  G   H  VV+ G + N  V++AL+DMYAKCG +  S ++
Sbjct: 345 PNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQL 404

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+   N + V++ ++IVG  + G G  +L LF +M+   ++  +VT+  VL AC+    +
Sbjct: 405 FSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAAL 464

Query: 348 DEGIQ----HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           + G Q     + ++Y K  ++ +A     ++DM  + G + +A +L   +  + D   + 
Sbjct: 465 EPGSQIHSLSVKTIYDKNTVVGNA-----LIDMYAKCGNIKDA-RLVFDMLREHD--QVS 516

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIES 430
           W  ++S   +HG    A++    ++E+
Sbjct: 517 WNAMISGYSVHGLYGEALKTFESMLET 543



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 188/403 (46%), Gaps = 10/403 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H EI+K G   + F  N L+N YV+      A +LFDEM + N VS+ +L+ GY    +
Sbjct: 66  LHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLR 125

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF ++ G     N F F+TV+K          G  +H  +   GF  +  V ++
Sbjct: 126 FSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTA 185

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y  C   + AR+VFD +  +++VSWT ++  + +N    E+L++F         +P
Sbjct: 186 LIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGF-KP 244

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    ASV+ AC  L     GK  HG   ++       V   L+D+Y K G V+ + +VF
Sbjct: 245 NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    V+ ++ MI   A+      ++++F  M    + PN  T   +L AC  + LVD
Sbjct: 305 EEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC--ASLVD 362

Query: 349 EGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
             +   +     K G+  +      ++DM  + GR++ + +L       P+   + W T+
Sbjct: 363 LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSE---SPNCTDVSWNTV 419

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY-ALAG 449
           +      G  + A+     ++E   QV    VT S+   A AG
Sbjct: 420 IVGYVQAGNGEKALILFKDMLEC--QVQGTEVTYSSVLRACAG 460



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 1/215 (0%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N + + +++++C    D  TGK +H  I   G   +L   + L++ Y K + +  A ++F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  RN VS+ ++I  ++Q  +  EA+ +F     +  +  N  + ++V+    S    
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHEL-NPFVFSTVLKLLVSAEWA 161

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G   H  V + G + +  V +AL+D Y+ CG    + +VF+ I    +V++T M+   
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            +      SL LF+ M   G KPN+ TF  VL AC
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC 256



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 29  TKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T+  +   L+ C  + +L   + +HS  +K+ +  NT   N LI+ Y +    + AR +F
Sbjct: 447 TEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVF 506

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D + E + VS+ ++++GY   G    AL  F+ ML     P++ TF  ++ ACS    L 
Sbjct: 507 DMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLD 566

Query: 146 TGKQIHTHIETFGFQYNLVVCSS----LVDMYGKCNDVD-GARRVFDLMGCRNVVSWTSI 200
            G+    + ++   +Y++  C+     +V + G+   +D  A+ V ++    +V+ W ++
Sbjct: 567 RGQ---AYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRAL 623

Query: 201 IVA 203
           + A
Sbjct: 624 LSA 626


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 350/582 (60%), Gaps = 39/582 (6%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + N  T N LI+ Y++  + ++A   F++M + ++VS+ S+++GY   G    AL++F K
Sbjct: 205 VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSK 264

Query: 119 MLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHI-----ETFGF------------- 159
           ML    + P+ FT A+++ AC+ L  L  GKQIH +I     ET G              
Sbjct: 265 MLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 160 ---------------QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
                            N++  +SL+D Y K  +V  AR +F+ +  R+VV+WT++IV +
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN   ++ALE+FR         PN + LA++++  +SL  L  GK  H   +++G    
Sbjct: 385 VQNGLWNDALELFR-LMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V +AL+ MYAK G++N + +VF+  +    +V++TSMI+  A++GLG+ +++LF  M+
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           S G+KP+ +T+VGVL AC+H GLV++G ++ + M   + I P   HY C++D+ GR G L
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            EAY   +S+ ++PD   + WG+LL++ ++H   D+A  A+ +L+  +   + AY+ L+N
Sbjct: 564 QEAYLFIESMPIEPDN--IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALAN 621

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            Y+  G+WEN    R  MK  G+ KE G SW+ I+++ +AF   + +  +  E+  L+ E
Sbjct: 622 VYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAE 681

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +  ++K+ G++   T  V  D+E+E +E+I+  HSE+LA+AFGL++ P+   +RIMKNLR
Sbjct: 682 IWEEIKKMGFIP-DTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLR 740

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   K IS +V R+ +VRD  RFHHF++GSCSC D+W
Sbjct: 741 VCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 104/492 (21%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGF----------------------- 58
           N  +S    AH +Q     K   +  SVH +I+K G                        
Sbjct: 5   NSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFA 64

Query: 59  --------LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
                   L +TF+ N LI+ Y +    +V+R+L  EM + + VS+T+++ GY   G   
Sbjct: 65  HHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFD 124

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
            A+ +F KM+   V P++FT + V+ +C+    L  G++IH+ +   G    + V +SL+
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 171 DMYGKCNDVDGARRVFDLMGCRN-------------------------------VVSWTS 199
           +MY KC D   A+ VFD M  +N                               +VSW S
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +I  ++Q     EAL +F +   +   +P+   LAS+++ACA+L +L  GK  H  ++R+
Sbjct: 245 MISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 260 GCEFNDVVASALVDMYAKC---------------------------------GSVNYSDK 286
             E +  V +AL+ MYAK                                  G+V  + +
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +FN++ +  VV +T+MIVG  + GL   +L+LF  M++ G +PN  T   +L   S   +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 347 VDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-- 403
           ++ G Q H  ++       P   +   ++ M  +TG ++    +AK +   P+G   +  
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNIN----VAKRVFDLPNGKKEIVS 478

Query: 404 WGTLLSASRLHG 415
           W +++ A   HG
Sbjct: 479 WTSMIMALAQHG 490



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 65/296 (21%)

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
           +GN    +EF FA +++    + D   G+ +H  I   G    + + ++L+  Y K   +
Sbjct: 3   VGNSPTSSEF-FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSL 61

Query: 180 DGARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNA 208
             A  VFD M  ++                                VSWT+IIV + Q  
Sbjct: 62  RFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFG 121

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
               A+ MF +     R  P+Q  +++V+++CA+   L  G+  H  VV+ G      VA
Sbjct: 122 LFDNAIWMFAKM-ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-------------------------------NPSVV 297
           ++L++MYAKCG    +  VF+R++                               +  +V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           ++ SMI G ++ G    +L +F++M++   +KP++ T   +L AC++   ++ G Q
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN----VVSYTSLMAGYI 104
           +H+  +K+G  S     N LI  Y +     VA+++FD    PN    +VS+TS++    
Sbjct: 431 IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD---LPNGKKEIVSWTSMIMALA 487

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNL 163
             G  + A+ LF++ML   + P+  T+  V+ AC+ +  +  G++ +  + E    +  L
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
              + ++D+YG+   +  A    + M    + ++W S++ +
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 333/579 (57%), Gaps = 7/579 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T  H ++      HL     VH+++ + GF ++ F  N LI  Y + ++   AR +F+ +
Sbjct: 121 TFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGL 180

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
             P   +VS+T++++ Y   G+P  AL +F +M    V P+     +V+ A + L DL  
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQ 240

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G+ IH  +   G +    +  SL  MY KC  V  A+ +FD M   N++ W ++I  +A+
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    +A+++F E       RP+   + S I+ACA +G L   +     V RS    +  
Sbjct: 301 NGFAKDAIDLFHEM-INKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVF 359

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           ++SAL+DM+AKCGSV  +  VF+R  +  VV +++MIVG   +G  R ++ L+  M   G
Sbjct: 360 ISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDG 419

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + PNDVTF+G+L AC+HSG+V EG    + M   + I P  +HY C++D+LGR G LD+A
Sbjct: 420 VHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQA 478

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y++ K + V P  G  +WG LLSA + H  V++   A+ QL   +      YV LSN YA
Sbjct: 479 YEVIKCMPVQP--GVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYA 536

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            A  W+ V  +R  MK  G++K+ GCSWVE+R +   F  G+    R  E+   +  +E 
Sbjct: 537 AARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIES 596

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           ++KE G+V  K   +  D+ DE  EE +  HSER+ +A+GLIS P+G T+RI KNLR C 
Sbjct: 597 RLKEGGFVANKDASLH-DLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACV 655

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +CH   KLIS +V R+ VVRD NRFHHF++G CSCGD+W
Sbjct: 656 NCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 207/399 (51%), Gaps = 7/399 (1%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           S  H+ + +   +    H   L  +H+ +L  G   + F +  LI+          ARQ+
Sbjct: 16  SGIHSDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQV 75

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FD++  P V  + +++ GY      Q ALL++ KM    V P+ FTF  ++KAC  L+ L
Sbjct: 76  FDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHL 135

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIV 202
             G+ +H  +   GF+ ++ V + L+ +Y KC  +  AR VF+ +    R +VSWT+I+ 
Sbjct: 136 QMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVS 195

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
           A+AQN +  EALE+F +       +P+   L SV+NA   L  L  G+  H  V++ G E
Sbjct: 196 AYAQNGEPVEALEIFSQMRKMDV-KPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLE 254

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
               +  +L  MYAKCG V  +  +F+++ +P+++ + +MI G AK G  + ++DLF+EM
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEM 314

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           I++ ++P+ ++    + AC+  G +++  + +D    +     D    + ++DM  + G 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQA-RWMDEYVSRSDYRDDVFISSALIDMFAKCGS 373

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           ++ A  +        D   ++W  ++    LHG+   A+
Sbjct: 374 VECARSVFDRTL---DRDVVVWSAMIVGYGLHGQAREAI 409


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/608 (37%), Positives = 350/608 (57%), Gaps = 38/608 (6%)

Query: 33  FIQQLQEC-KHLISLAS--VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++ +L+ C KH   L +  +H++I+KSG        N L++ Y +    Q A  LFDEM 
Sbjct: 5   YLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMP 64

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGK 148
           + + VS+ S++  Y     P   L +F  M   + + P+ F +AT++KAC+ L  L  GK
Sbjct: 65  QRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGK 124

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H       F  + VV SSLVDMY KC     AR VFD +  +  VSWT+++  +A++ 
Sbjct: 125 QVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSG 184

Query: 209 QGHEALE-------------------------------MFREFNYQSRDRPNQHMLASVI 237
              EA+E                               MF E   +  D  +  +L+SV+
Sbjct: 185 LKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVV 244

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            ACA+L  L  GK  HG+V+ SG E    +++ALVDMYAKC  +  +  VFNR+ +  VV
Sbjct: 245 GACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVV 304

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++TS+IVGAA++G  + +LDL+++M+   IKPN+VTFVG+++ACSH+GLV +G +   +M
Sbjct: 305 SWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAM 364

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
              Y I P  + +TC +D+L R+G L+EA  L K++   PD     W  LLSA + HG  
Sbjct: 365 IEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPT--WAALLSACKHHGNT 422

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++ V  +++L+  N    + YV LSN YA AG+WE +  +R  M    + ++PG S +++
Sbjct: 423 EMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDL 482

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
             ++  F+AG        E+  LL+EL+ +M++RGY+   T  V  D+E++ +E  +  H
Sbjct: 483 GKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYI-PDTSYVLHDMEEQEKERELFWH 541

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SER A+A+GL+    G  IRI+KNLR+C DCH   KL S IV ++ +VRD  R+HHF++G
Sbjct: 542 SERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDG 601

Query: 598 SCSCGDFW 605
            CSC DFW
Sbjct: 602 RCSCNDFW 609


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/543 (41%), Positives = 329/543 (60%), Gaps = 9/543 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F +N LIN YV+      A+ +FD+M + NVVS+T++++ Y        AL     ML  
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V PN FT+++V++AC  L +L   +Q+H  I   G   ++ V S+L+D+Y +  +++ A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
            RVFD M   ++V W+SII   AQN+ G EAL +F+    ++     Q  L SV+ AC  
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMK-RAGFLAQQTTLTSVLRACTG 176

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  G+  H  V++   +   ++ +AL+DMY KCGS+  ++ VF R+    V+++++M
Sbjct: 177 LALLELGRQVHVHVLKYDQDL--ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTM 234

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G A+ G  + +L LF  M   GIKPN VT VGVL ACSH+GLV+EG+ +  SM   +G
Sbjct: 235 IAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFG 294

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           I P  +HY C++D+LGR GRL EA  L   ++ +PD   + W  LL+A R+H  VD+A+ 
Sbjct: 295 IDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDA--VTWRALLNACRVHRNVDVAIH 352

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           A+ Q++  + Q A  YV LSN YA    W +V  +R  M   GI KEPGCSW+E+  Q +
Sbjct: 353 AAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIH 412

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
           AF  G+    +  E+   L +L  K+   GYV   T  V  D+E E  ++ +  HSE+LA
Sbjct: 413 AFILGDRSHPQIREINIQLNQLIYKLMGVGYV-PDTNFVLQDLEGEQMQDSLRYHSEKLA 471

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           + FGL+S+P+G TIRI KNLR+C DCH   KL++ + +R  V+RD  R+HHF++G CSCG
Sbjct: 472 IVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCG 531

Query: 603 DFW 605
           DFW
Sbjct: 532 DFW 534



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 173/358 (48%), Gaps = 40/358 (11%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L +L  +H  I+K G  S+ F  + LI+ Y R  + + A ++FDEM+  ++V +
Sbjct: 73  LRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVW 132

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           +S++AG+        AL LF++M        + T  +V++AC+ LA L  G+Q+H H+  
Sbjct: 133 SSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV-- 190

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
             +  +L++ ++L+DMY KC  ++ A  VF  M  ++V+SW+++I   AQN    EAL++
Sbjct: 191 LKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKL 250

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F         +PN   +  V+ AC           +H  +V  G  +      ++ +++ 
Sbjct: 251 FESMKVLGI-KPNYVTIVGVLFAC-----------SHAGLVEEGLYY----FHSMKELFG 294

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
                           +P    Y  MI    + G    ++DL NEM     +P+ VT+  
Sbjct: 295 ---------------IDPGREHYGCMIDLLGRAGRLSEAVDLINEM---ECEPDAVTWRA 336

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           +L+AC     VD  I     + R   + P DA  Y  + ++   T R ++  ++ +++
Sbjct: 337 LLNACRVHRNVDVAIHAAKQILR---LDPQDAGTYVLLSNIYANTQRWNDVAEVRRTM 391


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 349/606 (57%), Gaps = 34/606 (5%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   I  LQ  KH+  +  +H++++++G   + F +  L+    +      A ++F    
Sbjct: 49  QKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTH 108

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PNV  YT+L+ G+++ G    A+ L+ +ML + + P+ +  A+++KAC     L  G++
Sbjct: 109 NPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE 168

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG------------------- 190
           +H+     G   N +V   ++++YGKC ++  ARRVF+ M                    
Sbjct: 169 VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228

Query: 191 -----------CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
                       ++ V WT++I    +N + + ALE FR    ++  RPN+  +  V++A
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV-RPNEFTIVCVLSA 287

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C+ LG L  G+  H  + +   E N  V +AL++MY++CGS++ +  VF+ + +  V+TY
Sbjct: 288 CSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITY 347

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G +  G  R +++LF  MI R ++P +VTFVGVL+ACSH GLVD G +   SM R
Sbjct: 348 NTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTR 407

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            YG+ P  +HY C+VD+LGR GRL+EAY L +++++ PD   ++ GTLLSA ++H  +++
Sbjct: 408 DYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH--IMLGTLLSACKMHKNLEL 465

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
             + +  L +  Q  +  YV LS+ YA +G+W+    +R++MK  G+ KEPGCS +E+ +
Sbjct: 466 GEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F  G+    R   +   L EL R ++  GY   K  +V  D+ED  +E  + +HSE
Sbjct: 526 EIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKE-VVLQDIEDGEKEWALAIHSE 584

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLA+ +GLIS      IR+MKNLR+C DCH   KLI+ I  R  VVRD NRFH+F NG+C
Sbjct: 585 RLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGAC 644

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 645 SCGDYW 650


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/560 (38%), Positives = 332/560 (59%), Gaps = 4/560 (0%)

Query: 46   LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
            L   H++I   G   ++  L      YV   +   A  +F+++  P    +  ++ G+  
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 106  MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             G+   +L L+ KM+   + P++F F   +K+C+ L+DL  GK IH H+   G   +L V
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 166  CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             ++LVDMY KC D++ AR VFD M  R++VSWTS+I  +A N    E L  F +    S 
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFF-DLMRSSG 914

Query: 226  DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              PN+  + SV+ AC +LG L  G+  H  V+++G EF+ +VA+A++DMY+KCGS++ + 
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 286  KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             +F+  +   +V +++MI     +G GR ++DLF++M+  G++P+ VTF  VL ACSHSG
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSG 1034

Query: 346  LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            L++EG  +   M  ++ I     +Y C+VD+LGR G+L EA  L +++ V+PD    +WG
Sbjct: 1035 LLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDAS--IWG 1092

Query: 406  TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            +LL A R+H  +D+A + ++ L   +   A  +V LSN YA    W  V  +R  M R G
Sbjct: 1093 SLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRG 1152

Query: 466  IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
             +K  G S VE  +Q + F  G+    +  ++ + L EL   MK  GYV   T  V  D+
Sbjct: 1153 ANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYV-PLTDFVLHDI 1211

Query: 526  EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            E+EA+E  +  HSERLA+AFGLI+   G T+RI KNLR+C DCH+  KLIS IV R  +V
Sbjct: 1212 EEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILV 1271

Query: 586  RDVNRFHHFRNGSCSCGDFW 605
            RD++RFH F +G CSCGD+W
Sbjct: 1272 RDMHRFHRFEDGVCSCGDYW 1291



 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 276/486 (56%), Gaps = 7/486 (1%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            +  +  C  L+++ +   VH  +++  F  +   +N L+N Y +    ++A  LF +M 
Sbjct: 209 LVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP 268

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E +V+S+++++A Y N      AL LF +M+     PN  T  + ++AC++  +L  GK+
Sbjct: 269 EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK 328

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH      GF+ +  V ++L+DMY KC+  D A  +F  +  ++VVSW +++  +AQN  
Sbjct: 329 IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGM 388

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
            ++++ +FR        +P+   +  ++ A + LG        HG VVRSG   N  V +
Sbjct: 389 AYKSMGVFRNM-LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 447

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IK 328
           +L+++Y+KCGS+  + K+F  +    VV ++SMI     +G G  +L++F++M+    ++
Sbjct: 448 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVR 507

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN+VTF+ +L ACSH+GLV+EG++  D M   Y + PD++H+  +VD+LGR G+L +A  
Sbjct: 508 PNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMD 567

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           +   + +    GP +WG LL A R+H  +++   A+  L   +   A  Y+ LSN YA+ 
Sbjct: 568 IINRMPI--PAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVD 625

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G+W+NV  LR+ +K  G+ K  G S VE+R   ++F A +       ++  LLR+LE +M
Sbjct: 626 GKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQM 685

Query: 509 KERGYV 514
            +  Y+
Sbjct: 686 GKEVYI 691



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 221/451 (49%), Gaps = 11/451 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            +   Q C +  S++ +HS++ K+G L +TF    L + Y +    Q AR++FDE   PN
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           V  + S +  Y    Q +  L LF  M+      P+ FT    +KAC+ L  L  GK IH
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 152 THIETFG-FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
              +       ++ V S+LV++Y KC  +  A +VF+     + V WTS++  + QN   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            EAL +F +         +   L SV++ACA L  + +G   HG+V+R   + +  + ++
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS 246

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+++YAK G    +  +F+++    V+++++MI   A       +L+LF+EMI +  +PN
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPN 306

Query: 331 DVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            VT V  L AC+ S  ++EG + H  ++++ + +  D    T ++DM  +    DEA  L
Sbjct: 307 SVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL--DFSVSTALIDMYMKCSCPDEAVDL 364

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA-SNQLIESNQQVANAYVTLSNTYALA 448
            + +   P    + W  LLS    +G    ++    N L +  Q  A A V +    +  
Sbjct: 365 FQRL---PKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421

Query: 449 GEWENVHSLRSEMKRTGIHKE--PGCSWVEI 477
           G ++    L   + R+G +     G S +E+
Sbjct: 422 GIFQQALCLHGYVVRSGFNSNVFVGASLIEL 452


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 352/590 (59%), Gaps = 8/590 (1%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           Q    + HT    I        L     +H  ++  G   + F    LIN Y  L     
Sbjct: 72  QEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDN 131

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC-- 138
           AR++FD+  +  +  + +L       G  +  L L+++M    V  + FT+  V+KAC  
Sbjct: 132 ARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVA 191

Query: 139 --SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
             + ++ L+ G++IH HI   GF+ ++ + ++L+DMY +   V  A RVFD M  +NVVS
Sbjct: 192 SEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVS 251

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGV 255
           W+++I  +++N +  EALE+FR+   +++D  PN   + SV+ ACA+L  L  GK+ HG 
Sbjct: 252 WSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGY 311

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           ++R G +    V SALV +YA+CG++    +VF R+    VV++ S+I     +G GR +
Sbjct: 312 ILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKA 371

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           + +F EMI +G+ P+ ++FV VL ACSH+GLV+EG    +SM R + I P  +HY C+VD
Sbjct: 372 IQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVD 431

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +LGR  RLDEA K+   ++++P  GP +WG+LL + R+H  V++A  A+++L E     A
Sbjct: 432 LLGRANRLDEAAKIIDDMRIEP--GPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNA 489

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV L++ YA A  W  V  ++  ++  G+ K PG S +EIR + Y+F + +    +  
Sbjct: 490 GNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIE 549

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           ++ +LL +L  +MKE+GYV   T +V  D++ E +E IV  HSE+LALAFGLI+  KG T
Sbjct: 550 QLHALLLKLSMEMKEKGYV-PDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGET 608

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IRI KNLR+C DCH V K IS    R+ +VRDVNRFH F++G CSCGD+W
Sbjct: 609 IRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 329/579 (56%), Gaps = 13/579 (2%)

Query: 33   FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            F   L  CK+  +L     +H  I +SG   +    N LIN Y+R    Q AR +F  + 
Sbjct: 535  FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 90   EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              +V+S+T+++ G  + G+   A+ LF +M      P + TF++++K C+  A L  GK+
Sbjct: 595  HRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKK 654

Query: 150  IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
            +  +I   G++ +  V ++L+  Y K   +  AR VFD M  R++VSW  II  +AQN  
Sbjct: 655  VIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGL 714

Query: 210  GHEALEMFREFNYQSRDR---PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
            G  A+E    F YQ +++   PN+    S++NAC+S   L  GK  H  +V+   + +  
Sbjct: 715  GQTAVE----FAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVR 770

Query: 267  VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
            V +AL+ MYAKCGS   + +VF+ I   +VVT+ +MI   A++GL   +L  FN M   G
Sbjct: 771  VGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEG 830

Query: 327  IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            IKP+  TF  +L AC+H+GLV EG Q   SM  +YG++P  +HY C+V +LGR  R  EA
Sbjct: 831  IKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEA 890

Query: 387  YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
              L   +   PD    +W TLL A R+HG + +A  A+N  ++ N +    Y+ LSN YA
Sbjct: 891  ETLINQMPFPPDAA--VWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYA 948

Query: 447  LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
             AG W++V  +R  M+  GI KEPG SW+E+ +  + F A +      +E+ + L+ L  
Sbjct: 949  AAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSV 1008

Query: 507  KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
            +M+E GY    T  V  D+    +E  +  HSERLA+A+GLI  P G  IRI KNLR+C 
Sbjct: 1009 EMEEAGYF-PDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICG 1067

Query: 567  DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH   K IS +V R+ + RD NRFH F+NG CSC D+W
Sbjct: 1068 DCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 205/387 (52%), Gaps = 10/387 (2%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L  C +  + A    +H +IL+SG  SN    N L+N Y R      A+ +F+   
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +V+S+ S++AG+   G  + A  LFQ+M    + P+  TFA+V+  C     L  GKQ
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  I   G Q ++ + ++L++MY +C  +  AR VF  +  R+V+SWT++I   A   +
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A+E+F +   +   RP +   +S++  C S   L  GK     ++ SG E +  V +
Sbjct: 614 DMKAIELFWQMQNEGF-RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN 672

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+  Y+K GS+  + +VF+++ +  +V++  +I G A+ GLG+ +++   +M  + + P
Sbjct: 673 ALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVP 732

Query: 330 NDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           N  +FV +L+ACS    ++EG + H + + RK  +  D +    ++ M  + G   EA +
Sbjct: 733 NKFSFVSLLNACSSFSALEEGKRVHAEIVKRK--LQGDVRVGAALISMYAKCGSQGEAQE 790

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +  +I    +   + W  +++A   HG
Sbjct: 791 VFDNI---IEKNVVTWNAMINAYAQHG 814



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 206/390 (52%), Gaps = 8/390 (2%)

Query: 24  RSSCHTKAHFIQQLQEC--KHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           R +   +A ++  LQ C  K L+  A  +H++++++    + F  N LIN YV+ +    
Sbjct: 21  RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD 80

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A Q+F EM   +V+S+ SL++ Y   G  + A  LF++M      PN+ T+ +++ AC  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
            A+L  GK+IH+ I   G+Q +  V +SL+ MYGKC D+  AR+VF  +  R+VVS+ ++
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +  +AQ A   E L +F + + +    P++    ++++A  +   L  GK  H + V  G
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGIS-PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
              +  V +ALV M  +CG V+ + + F   ++  VV Y ++I   A++G    + + + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M S G+  N  T++ +L+ACS S  ++ G + + S   + G   D +    ++ M  R 
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           G L +A +L  ++   P    + W  +++ 
Sbjct: 379 GDLPKARELFYTM---PKRDLISWNAIIAG 405



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 213/413 (51%), Gaps = 11/413 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I + G  S+    N LI+ Y R      AR+LF  M + +++S+ +++AGY     
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ L+++M    V P   TF  ++ AC+  +    GK IH  I   G + N  + ++
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY +C  +  A+ VF+    R+V+SW S+I  HAQ+     A ++F+E   +  + P
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE-P 530

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +    ASV++ C +   L  GK  HG +  SG + +  + +AL++MY +CGS+  +  VF
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + + +  V+++T+MI G A  G    +++LF +M + G +P   TF  +L  C+ S  +D
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLD 650

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + +  +    G   D      ++    ++G + +A ++   +   P    + W  ++
Sbjct: 651 EGKKVIAYILNS-GYELDTGVGNALISAYSKSGSMTDAREVFDKM---PSRDIVSWNKII 706

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSN---TYALAGEWENVHS 456
           +    +G    AVE + Q+ E +  V N  ++V+L N   +++   E + VH+
Sbjct: 707 AGYAQNGLGQTAVEFAYQMQEQD-VVPNKFSFVSLLNACSSFSALEEGKRVHA 758



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 177/346 (51%), Gaps = 2/346 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   ++ G  S+      L+   VR      A+Q F    + +VV Y +L+A     G 
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGH 310

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A   + +M  + V  N  T+ +++ ACS    L  GK IH+HI   G   ++ + ++
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNA 370

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY +C D+  AR +F  M  R+++SW +II  +A+     EA+ ++++   +   +P
Sbjct: 371 LISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV-KP 429

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +     +++ACA+      GK+ H  ++RSG + N  +A+AL++MY +CGS+  +  VF
Sbjct: 430 GRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                  V+++ SMI G A++G    +  LF EM +  ++P+++TF  VL  C +   ++
Sbjct: 490 EGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALE 549

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            G Q +     + G+  D      +++M  R G L +A  +  S+Q
Sbjct: 550 LGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 326/573 (56%), Gaps = 5/573 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           FI    + K+L     VH+ +  S F  + F  N LI+ Y +      AR++FDEM   +
Sbjct: 57  FITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKD 116

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +VS+TSL+AGY     P+ A+ L   ML     PN FTFA+++KA    AD   G+QIH 
Sbjct: 117 MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHA 176

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                 +  ++ V S+L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G  
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL  F E   ++         +SV ++ A LG L  GK  H  +++S  +      + L+
Sbjct: 237 ALMTFAEM-LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLL 295

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAK GS+  + KVF+R+ +  +VT+ +M+   A+YGLG+ ++  F EM   GI  N V
Sbjct: 296 DMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQV 355

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ +L ACSH GLV EG ++ + M ++Y + P+  H+  VV +LGR G L+ A      
Sbjct: 356 TFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFK 414

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + ++P     +WG LL+A R+H    +   A++ + E +   +   V L N YA  G+W+
Sbjct: 415 MPIEPTAA--VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
               +R  MK TG+ KEP CSWVE+ +  + F A +    R  E+  +  ++ +K+++ G
Sbjct: 473 AAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEG 532

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV      V + V+D+ RE  +  HSE+LALAF LI +P G TIRIMKN+R+C DCH  F
Sbjct: 533 YV-PDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAF 591

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS +  R+ VVRD NRFHHF NGSCSC D+W
Sbjct: 592 KYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 151/291 (51%), Gaps = 7/291 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    + T I AC+   +L   +++H H+ +  F  +  + +SL+ +Y KC  V  AR+V
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  +++VSWTS+I  +AQN    EA+ +      + R +PN    AS++ A  +   
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGM-LKGRFKPNGFTFASLLKAAGAHAD 167

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  H + V+     +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G
Sbjct: 168 SGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISG 227

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGII 364
            A+ G G  +L  F EM+  G +    T+  V  + +  G +++G   H   +  +  + 
Sbjct: 228 FARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMT 287

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
             A +   ++DM  ++G + +A K+   +    D   + W T+L+A   +G
Sbjct: 288 AFAGN--TLLDMYAKSGSMIDARKVFDRVD---DKDLVTWNTMLTAFAQYG 333


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 340/559 (60%), Gaps = 7/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHSE++  G  S+ +  N L+  Y +      AR +FD M E ++ S+ ++++GY     
Sbjct: 183 VHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNAD 242

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVC 166
              A L+F  M    ++ +  T   ++ AC+ L  +  GK IH +    + G  YN    
Sbjct: 243 SGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIG-NYNKFFT 301

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL++MY  CN +  ARR+F+ +  ++ VSW S+I+ +A+N    E+L +FR        
Sbjct: 302 NSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSG 361

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P+Q    +V+ AC  +  L  G   H  +V+ G + N +V +ALVDMY+KCGS+  S +
Sbjct: 362 -PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRR 420

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ + + S+V++++M+ G   +G GR ++ + + M +  + P++  F  +L ACSH+GL
Sbjct: 421 VFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGL 480

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V EG +    M ++Y + P   HY+C+VD+LGR G LDEAY + +++++ P     +W  
Sbjct: 481 VVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSD--IWAA 538

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL+ASRLH  + +A  ++ ++ + N +V ++Y+ LSN YA    W++V  +R+ ++R G+
Sbjct: 539 LLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGL 598

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGCS++E+ +  + F  G+   ++  ++ + L EL++++KE GY    T LVF DVE
Sbjct: 599 KKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGY-KPDTSLVFYDVE 657

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSERLA+AF LI+   G  IRI KNLR+C DCH V KLIS++  R+ ++R
Sbjct: 658 EEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMR 717

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D++RFHHF  G CSCGD+W
Sbjct: 718 DIHRFHHFIKGFCSCGDYW 736



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 188/386 (48%), Gaps = 7/386 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEP 91
            +Q     K       +H+ ++    L N   LN  L   Y        A  +FD ++  
Sbjct: 65  LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK 124

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N   +  ++ GY + G P  +L+L+++ML      + FT+  V+KAC  L  +  G+++H
Sbjct: 125 NSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVH 184

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           + +   G + ++ V +SL+ MY K  D+  AR VFD M  R++ SW ++I  +A+NA   
Sbjct: 185 SEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSG 244

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC-EFNDVVASA 270
            A  +F +   ++    +   L  +++ACA L  +  GKV HG  VR+    +N    ++
Sbjct: 245 TAFLVF-DLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L++MY  C  +  + ++F R+     V++ SMI+G A+ G    SL LF  M   G  P+
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            VTF+ VL AC     +  G+  + S   K G   +    T +VDM  + G L  + ++ 
Sbjct: 364 QVTFIAVLGACDQIAALRYGMS-IHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVF 422

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGR 416
             +   PD   + W  +++   LHGR
Sbjct: 423 DEM---PDKSLVSWSAMVAGYGLHGR 445



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 5/176 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L  C  + +L    S+HS ++K GF +NT     L++ Y +      +R++FDEM 
Sbjct: 367 FIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP 426

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + ++VS+++++AGY   G+ + A+ +   M  N V P+   F +++ ACS    ++ GK+
Sbjct: 427 DKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKE 486

Query: 150 IHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA 203
           I   +E  +  +  L   S +VD+ G+   +D A  +   M  +     W +++ A
Sbjct: 487 IFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTA 542


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/582 (38%), Positives = 335/582 (57%), Gaps = 13/582 (2%)

Query: 30   KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
            K  F   L  CK+  +L     +H  I++SG   +    N LIN Y+R    Q A ++F 
Sbjct: 587  KITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFH 646

Query: 87   EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
             +   NV+S+T+++ G+ + G+ + A  LF +M  +   P + TF++++KAC   A L  
Sbjct: 647  SLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDE 706

Query: 147  GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            GK++  HI   G++ +  V ++L+  Y K   +  AR+VFD M  R+++SW  +I  +AQ
Sbjct: 707  GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQ 766

Query: 207  NAQGHEALEMFREFNYQSRDRP---NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            N  G  AL+    F YQ +++    N+    S++NAC+S   L  GK  H  +V+   + 
Sbjct: 767  NGLGGTALQ----FAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQG 822

Query: 264  NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
            +  V +AL+ MYAKCGS+  + +VF+  +  +VVT+ +MI   A++GL   +LD FN M 
Sbjct: 823  DVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMD 882

Query: 324  SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
              GIKP+  TF  +L AC+HSGLV EG +   S+  ++G+ P  +HY C+V +LGR GR 
Sbjct: 883  KEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRF 942

Query: 384  DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
             EA  L   +   PD    +W TLL A R+HG V +A  A+N  ++ N +    YV LSN
Sbjct: 943  QEAETLINQMPFPPDAA--VWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSN 1000

Query: 444  TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
             YA AG W++V  +R  M+  GI KEPG SW+E+ +  + F A +      +E+   L+ 
Sbjct: 1001 VYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKR 1060

Query: 504  LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
            L  +M+  GY    T  V  +++ E +E  +  HSERLA+A+GL+  P G  IRI KNLR
Sbjct: 1061 LSLEMERAGY-SPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLR 1119

Query: 564  MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +C DCH   K IS +V R+ + RD NRFH F+NG CSC DFW
Sbjct: 1120 ICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 199/378 (52%), Gaps = 7/378 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +IL+SG  SN    N L+N Y R      A+ +F+     +++S+ S++AG+   G 
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  LF +M    + P++ TFA+V+  C     L  G+QIH  I   G Q ++ + ++
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA 627

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY +C  +  A  VF  +  RNV+SWT++I   A   +  +A E+F +       +P
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF-KP 686

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +   +S++ AC S   L  GK     ++ SG E +  V +AL+  Y+K GS+  + KVF
Sbjct: 687 VKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVF 746

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +++ N  ++++  MI G A+ GLG  +L    +M  +G+  N  +FV +L+ACS    ++
Sbjct: 747 DKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALE 806

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           EG + H + + RK  +  D +    ++ M  + G L+EA ++  +     +   + W  +
Sbjct: 807 EGKRVHAEIVKRK--MQGDVRVGAALISMYAKCGSLEEAQEVFDNFT---EKNVVTWNAM 861

Query: 408 LSASRLHGRVDIAVEASN 425
           ++A   HG    A++  N
Sbjct: 862 INAYAQHGLASKALDFFN 879



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 204/385 (52%), Gaps = 13/385 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I + G  S+    N LI+ Y R      AR+LF+ M + +++S+ +++AGY     
Sbjct: 407 IHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRED 466

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ L+++M    V P   TF  ++ AC+  +    GK IH  I   G + N  + ++
Sbjct: 467 RGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANA 526

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY +C  +  A+ VF+    R+++SW S+I  HAQ+     A ++F E   +  + P
Sbjct: 527 LMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLE-P 585

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++   ASV+  C +   L  G+  H +++ SG + +  + +AL++MY +CGS+  + +VF
Sbjct: 586 DKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVF 645

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + + + +V+++T+MI G A  G  R + +LF +M + G KP   TF  +L AC  S  +D
Sbjct: 646 HSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLD 705

Query: 349 EG---IQH-LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           EG   I H L+S Y     + +A     ++    ++G + +A K+   +   P+   + W
Sbjct: 706 EGKKVIAHILNSGYELDTGVGNA-----LISAYSKSGSMTDARKVFDKM---PNRDIMSW 757

Query: 405 GTLLSASRLHGRVDIAVEASNQLIE 429
             +++    +G    A++ + Q+ E
Sbjct: 758 NKMIAGYAQNGLGGTALQFAYQMQE 782



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 204/390 (52%), Gaps = 8/390 (2%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           R +   +A ++  +Q C    SLA    +H++++++G   + F  N LIN YV+ +    
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A Q+F +M   +V+S+ SL++ Y   G  + A  LF++M      P++ T+ +++ AC  
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
            A+L  GK+IH+ I   G+Q +  V +SL++MYGKC D+  AR+VF  +  R+VVS+ ++
Sbjct: 196 PAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTM 255

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +  +AQ A   E + +F + + +    P++    ++++A  +   L  GK  H + V  G
Sbjct: 256 LGLYAQKAYVEECIGLFGQMSSEGIP-PDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEG 314

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
              +  V +AL  M+ +CG V  + +     ++  VV Y ++I   A++G    + + + 
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYY 374

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           +M S G+  N  T++ VL+ACS S  +  G + + S   + G   D +    ++ M  R 
Sbjct: 375 QMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARC 433

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           G L  A +L  ++   P    + W  +++ 
Sbjct: 434 GDLPRARELFNTM---PKRDLISWNAIIAG 460



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 180/346 (52%), Gaps = 2/346 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +  G  S+      L   +VR      A+Q  +   + +VV Y +L+A     G 
Sbjct: 306 IHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGH 365

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A   + +M  + V  N  T+ +V+ ACS    L  G+ IH+HI   G   ++ + +S
Sbjct: 366 YEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNS 425

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY +C D+  AR +F+ M  R+++SW +II  +A+     EA++++++   +   +P
Sbjct: 426 LISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGV-KP 484

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +     +++AC +      GK+ H  ++RSG + N  +A+AL++MY +CGS+  +  VF
Sbjct: 485 GRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVF 544

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                  ++++ SMI G A++G    +  LF EM   G++P+ +TF  VL  C +   ++
Sbjct: 545 EGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALE 604

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            G Q +  +  + G+  D      +++M  R G L +AY++  S++
Sbjct: 605 LGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR 649



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 181/380 (47%), Gaps = 19/380 (5%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N   +  +++ C+    L   K+IH  +   G   ++ + + L++MY KC  V  A +VF
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
             M  R+V+SW S+I  +AQ     +A ++F E    +   P++    S++ AC S   L
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ-TAGFIPSKITYISILTACCSPAEL 199

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  H  ++ +G + +  V ++L++MY KC  +  + +VF+ I    VV+Y +M+   
Sbjct: 200 EYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLY 259

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A+       + LF +M S GI P+ VT++ +L A +   ++DEG + +  +    G+  D
Sbjct: 260 AQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEG-KRIHKLAVNEGLNSD 318

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +  T +  M  R G +  A    ++++   D   +++  L++A   HG  + A E   Q
Sbjct: 319 IRVGTALATMFVRCGDVAGA---KQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQ 375

Query: 427 LIESNQQVANAYVTLS-----NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
           +  S+  V N    LS     +T    G  E +HS  SE+  +        S V+I +  
Sbjct: 376 M-RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHS--------SDVQIGNSL 426

Query: 482 YAFYAGNALFERGSEVLSLL 501
            + YA      R  E+ + +
Sbjct: 427 ISMYARCGDLPRARELFNTM 446



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 2/173 (1%)

Query: 222 YQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
           YQ R    N+     ++  C     L   K  H  +V +G   +  +++ L++MY KC S
Sbjct: 73  YQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRS 132

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           V+ + +VF ++    V+++ S+I   A+ G  + +  LF EM + G  P+ +T++ +L A
Sbjct: 133 VSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTA 192

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           C     ++ G + + S   + G   D +    +++M G+   L  A ++   I
Sbjct: 193 CCSPAELEYG-KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI 244


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/556 (39%), Positives = 330/556 (59%), Gaps = 37/556 (6%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR +F+++  P   +  S++ GY N   P+ A+L +Q M+   + P+ FTF ++ K+C +
Sbjct: 31  ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV 90

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L +   GKQ+H H    GF  +  + ++L++MY  C  +  AR+VFD M  ++VVSW ++
Sbjct: 91  LCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 147

Query: 201 IVAHAQNAQGHEALEMFREF--------------------NYQ-----------SRDRPN 229
           I A+AQ    HEA+++FR                      +Y+           S  + +
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  +AS++ AC  LG L  GK  H  + +   E +  + +ALVDMYAKCGS+  + +VF 
Sbjct: 208 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 267

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +    V+T+T++IVG A  G G  +L+LF+EM    +KP+ +TFVGVL ACSH+GLV+E
Sbjct: 268 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNE 327

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           GI + +SM  KYGI P  +HY C+VDMLGR GR+ EA  L +++ + PD   L+   LLS
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV--GLLS 385

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A R+HG + +A  A+ QLIE + +    YV LSN Y+    WE    +R  M    I K 
Sbjct: 386 ACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKP 445

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PGCS +E+    + F  G+    + SE+   L ++ R++K  GYV  K+ ++F D++++ 
Sbjct: 446 PGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLF-DMDEKE 504

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +E  + LHSE+LA+AFGL+S   G  IR++KNLR+C DCH   K IS++  R+ +VRD N
Sbjct: 505 KENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRN 564

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF  GSCSC DFW
Sbjct: 565 RFHHFTKGSCSCRDFW 580



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 13/190 (6%)

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GS+ Y+  VFN+I NP+  T  S+I G     L R ++  +  M+ +G+ P+  TF  + 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            +C   G++ EG Q L     K G   DA     +++M    G L  A K+   +    +
Sbjct: 86  KSC---GVLCEGKQ-LHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMV---N 138

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV--TLSNTYALAGEWENVHS 456
              + W T++ A   + + D+  EA  +L    +  +N +    + N +    ++E   S
Sbjct: 139 KSVVSWATMIGA---YAQWDLPHEAI-KLFRRMEIASNLFCWNIMINGHVEDSDYEEALS 194

Query: 457 LRSEMKRTGI 466
           L +EM+ +G+
Sbjct: 195 LFNEMQLSGV 204


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/654 (34%), Positives = 364/654 (55%), Gaps = 70/654 (10%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+    S  T  + +  +   + L +   VHS I+K G   N    N L+N Y +   
Sbjct: 137 MMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 78  TQVARQLFDEML-------------------------------EPNVVSYTSLMAGYINM 106
             +A+ +FD M+                               E ++V++ S+++GY   
Sbjct: 197 PMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQR 256

Query: 107 GQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           G    AL +F KML  +++ P+ FT A+V+ AC+ L  L  G+QIH+HI T GF  + +V
Sbjct: 257 GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV 316

Query: 166 CSSLVDMYGKCNDVDGARR---------------------------------VFDLMGCR 192
            ++L+ MY +C  V+ ARR                                 +FD +  R
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDR 376

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           +VV+WT++IV + Q+    EA+ +FR    + + RPN + LA++++  +SL  L  GK  
Sbjct: 377 DVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQ-RPNSYTLAAMLSVASSLASLGHGKQI 435

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGL 311
           HG  V+SG  ++  V++AL+ MYAK GS+  + + F+ I      V++TSMI+  A++G 
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
              +L+LF  M+  G++P+ +T+VGV  AC+H+GLV++G Q+ D M     IIP   HY 
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           C+VD+ GR G L EA +  + + ++PD   + WG+LLSA R++  +D+   A+ +L+   
Sbjct: 556 CMVDLFGRAGLLQEAQEFIEKMPIEPD--VVTWGSLLSACRVYKNIDLGKVAAERLLLLE 613

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
            + + AY  L+N Y+  G+WE    +R  MK   + KE G SW+E++ + +AF   + + 
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIH 673

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
            + +E+   ++++  ++K+ GYV   T  V  D+E+E +E+I+  HSE+LA+AFGLIS P
Sbjct: 674 PQKNEIYITMKKIWDEIKKMGYVP-DTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTP 732

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              T+RIMKNLR+C DCH   K IS +V R+ +VRD  RFHHF++G CSC D+W
Sbjct: 733 DKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 212/469 (45%), Gaps = 98/469 (20%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML------------------- 89
           VH  ++KSG + + + +N+L+N Y +      AR+LFDEM                    
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 90  ------------EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                       + + VS+T+++ GY N+GQ   A+ +  +M+   + P++FT   V+ +
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            +    L TGK++H+ I   G + N+ V +SL++MY KC D   A+ VFD M  +++ SW
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 198 TSIIVAHAQ-----------------------------NAQGHE--ALEMFREFNYQSRD 226
            ++I  H Q                             N +G++  AL+MF +    S  
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV----- 281
            P++  LASV++ACA+L +L  G+  H  +V +G + + +V +AL+ MY++CG V     
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 282 ----------------------------NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
                                       N +  +F+ + +  VV +T+MIVG  ++GL  
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYG 395

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            +++LF  M+    +PN  T   +L   S    +  G Q +     K G I        +
Sbjct: 396 EAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQ-IHGSAVKSGEIYSVSVSNAL 454

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           + M  + G +  A +    I+ + D   + W +++ A   HG  + A+E
Sbjct: 455 ITMYAKAGSITSASRAFDLIRCERD--TVSWTSMIIALAQHGHAEEALE 501



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 119/484 (24%)

Query: 126 PNEFTFATVIKACSMLAD--------LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           P   + +T+++ C+ L            T + +H  +   G  +++ + ++L+++Y K  
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQN------------------------------ 207
               AR++FD M  R   SW +++ A+A+                               
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 208 -AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
             Q H+A+ +  E   +  + P+Q  L +V+ + A+   L +GK  H  +V+ G   N  
Sbjct: 124 IGQYHKAIRIMGEMMREGIE-PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS 182

Query: 267 VASALVDMYAKCGSVNYSDKVFNR-------------------------------ISNPS 295
           V+++L++MYAKCG    +  VF+R                               ++   
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACS-----------H 343
           +VT+ SMI G  + G    +LD+F++M+    + P+  T   VL AC+           H
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 344 SGLVDEG-------IQHLDSMYRKYGIIPDAKH--------------YTCVVDMLGRTGR 382
           S +V  G       +  L SMY + G +  A+               +T ++D   + G 
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           ++EA  +  S++   D   + W  ++     HG    A+     ++   Q+         
Sbjct: 363 MNEAKNIFDSLK---DRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQR--------P 411

Query: 443 NTYALAGEWENVHSLRSEMKRTGIH----KEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           N+Y LA       SL S      IH    K      V + +     YA        S   
Sbjct: 412 NSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAF 471

Query: 499 SLLR 502
            L+R
Sbjct: 472 DLIR 475



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 3/190 (1%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
           S+  + +R + +T A  +        L     +H   +KSG + +    N LI  Y +  
Sbjct: 403 SMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462

Query: 77  KTQVARQLFDEM-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
               A + FD +  E + VS+TS++      G  + AL LF+ ML   + P+  T+  V 
Sbjct: 463 SITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522

Query: 136 KACSMLADLITGKQIHTHIETFG-FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-N 193
            AC+    +  G+Q    ++        L   + +VD++G+   +  A+   + M    +
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582

Query: 194 VVSWTSIIVA 203
           VV+W S++ A
Sbjct: 583 VVTWGSLLSA 592


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/623 (35%), Positives = 351/623 (56%), Gaps = 40/623 (6%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV 73
           AA ++  ++   S   +   I  L +C  +     +  +I +   +S     N LI  Y+
Sbjct: 309 AAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVS----WNALITGYM 364

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           +      A++LFD+M   N +S+  ++AGY   G+ + AL L Q++  + + P+  +  +
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC----------------- 176
           +  ACS +  L TG Q+H+     G Q+N   C++L+ MYGKC                 
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 177 -------------NDV-DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                        ND+ D AR  FD M  R+ VSWT+II A+A   Q +EA+  F+   +
Sbjct: 485 IVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTM-F 543

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
              + PN  +L  ++  C SLG    G+  H V ++ G +   +VA+AL+ MY KCG  +
Sbjct: 544 CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD 603

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S ++F+ +    + T+ ++I G A++GLGR ++ ++  M S G+ PN+VTFVG+L+ACS
Sbjct: 604 -SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLVDEG +   SM + YG+ P  +HY C+VD+LGRTG +  A +    + ++PD   +
Sbjct: 663 HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD--TV 720

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A ++H   +I   A+ +L       A  YV LSN Y+  G W  V  +R  MK
Sbjct: 721 IWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMK 780

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
           + G+ KEPGCSW +I+D+ ++F  G+   E+  E+++ L EL   +K  GYV   T  V 
Sbjct: 781 QQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYV-PDTEFVL 839

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+++E +E  +  HSE+LA+A+ L++ PKG+ I+I+KNLR+C DCH   K +S + +R 
Sbjct: 840 HDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQ 899

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
             +RD NRFHHFRNGSCSC DFW
Sbjct: 900 IDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 168/363 (46%), Gaps = 46/363 (12%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT   N +I+CYV+     +AR+LFD M   +V S+ S++ GY +  Q   A  LF+KM 
Sbjct: 126 NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMP 185

Query: 121 G-NLV-W-----------------------------PNEFTFATVIKACSMLADLITGKQ 149
             NLV W                             P++  FA+ + A   L +L   + 
Sbjct: 186 ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLES 245

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDV-DGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           +       GF+ ++V+ ++++++Y +   V D A + F+ M  RN  +W+++I A +   
Sbjct: 246 LRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGG 305

Query: 209 QGHEALEMFREFNYQSRDRPNQHML--ASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           +   A+ ++       RD P + +    ++I   A  GR+   ++    +     E   V
Sbjct: 306 RIDAAIAVYE------RD-PVKSIACRTALITGLAQCGRIDDARILFEQIP----EPIVV 354

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+  Y + G VN + ++F+++   + +++  MI G A+ G    +L L  E+   G
Sbjct: 355 SWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSG 414

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + P+  +   +  ACS+   ++ G Q + S+  K G   ++     ++ M G+   ++ A
Sbjct: 415 MLPSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 387 YKL 389
            ++
Sbjct: 474 RQV 476



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 182/423 (43%), Gaps = 83/423 (19%)

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           RL +   AR++FD M   +++++ S+++ Y + G P  A  L+  + G     N  T A 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG----NMRTGAI 101

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++     L  ++  +++   +     + N V  ++++  Y +  D+  ARR+FD M  R+
Sbjct: 102 LLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFRE----------------------------FNYQSR 225
           V SW S++  +  + Q  +A  +F +                            F    R
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR 217

Query: 226 D--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           +   P+Q   AS ++A   LG L   +    + +++G E + V+ +A++++Y++      
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSR------ 271

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
                           TS++  A K+         F  MI R    N+ T+  ++ A SH
Sbjct: 272 ---------------DTSVLDTAIKF---------FESMIER----NEYTWSTMIAALSH 303

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G +D  I    ++Y +  +   A   T ++  L + GR+D+A  L + I   P+   + 
Sbjct: 304 GGRIDAAI----AVYERDPVKSIACR-TALITGLAQCGRIDDARILFEQI---PEPIVVS 355

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W  L++    +G V+ A E  +++   N     ++  +   YA  G  E    L  E+ R
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRN---TISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 464 TGI 466
           +G+
Sbjct: 413 SGM 415



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 47/289 (16%)

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           CS+ +   G+   V  AR VFD M  R++++W S+I A+  N     A ++     Y + 
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDL-----YDAI 91

Query: 226 DRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              N    A +++    LGR++   +V  G++ R     N V  +A++  Y + G +  +
Sbjct: 92  SGGNMRTGAILLSGYGRLGRVLEARRVFDGMLER-----NTVAWNAMISCYVQNGDITMA 146

Query: 285 DKVFNRISNPSVVTYTSMIVGAAK--------------------------YGLGRF---- 314
            ++F+ + +  V ++ SM+ G                              G GR     
Sbjct: 147 RRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG 206

Query: 315 -SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            + D+F +M   G+ P+   F   L A    G +D  ++ L  +  K G   D    T +
Sbjct: 207 KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAI 265

Query: 374 VDMLGR-TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           +++  R T  LD A K  +S+    +     W T+++A    GR+D A+
Sbjct: 266 LNVYSRDTSVLDTAIKFFESM---IERNEYTWSTMIAALSHGGRIDAAI 311


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/589 (38%), Positives = 327/589 (55%), Gaps = 33/589 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH   +K  F  + + LN L+  Y       +A +LF  +   +VVS+ S+++ +    
Sbjct: 147 AVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGN 206

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            P+ AL LF KM    V PN  T   V+ AC+   DL  G+ + ++IE  G + +L +C+
Sbjct: 207 CPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCN 266

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWT----------------------------- 198
           +++DMY KC  VD A+++FD M  R+V SWT                             
Sbjct: 267 AMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAA 326

Query: 199 --SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
              +I A+ QN +  EAL +F E       +P++  L S ++ACA LG +  G   H  +
Sbjct: 327 WNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYI 386

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            R G   N  + S+LVDMYAKCGS+  + +VF  +    V  +++MI G   +G G+ ++
Sbjct: 387 KREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAI 446

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           DLF EM    +KPN VTF  VL ACSH+GLVDEG      M   YG++P+ KHY C+VD+
Sbjct: 447 DLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDI 506

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR G L+EA +L   +   P     +WG LL A  LH  V++   AS+QL++   +   
Sbjct: 507 LGRAGFLEEAMELINEMSTTPSAS--VWGALLGACSLHMNVELGELASDQLLKLEPRNHG 564

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           A V LSN YA  G WE V  LR  M+ T + KEPGCS +E     + F  G+      S 
Sbjct: 565 AIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSN 624

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + S L E+  K+K  GY   K+ L+ +  ED+ +E+ + LHSE+LA+AFGL+++     I
Sbjct: 625 IYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPI 684

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R++KNLR+C DCH   KL+S + +RD ++RD  RFHHFR+G CSC D+W
Sbjct: 685 RVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 217/448 (48%), Gaps = 42/448 (9%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV--RLKKTQVARQLFDEML 89
             +  + +C     L  VH+ +L++G   + F+ + L              AR LFD++ 
Sbjct: 27  QILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIP 86

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPNEFTFATVIKACSMLADLITGK 148
           +PN+ ++ +L+  Y +   P  + ++F  +L      PN+FTF  VIKA S L     G 
Sbjct: 87  QPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGT 146

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H       F  +L + +SLV  YG C D+  A R+F  + C++VVSW S+I A AQ  
Sbjct: 147 AVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGN 206

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              +ALE+F +   ++   PN   +  V++ACA    L  G+     + R G + +  + 
Sbjct: 207 CPEDALELFLKMERENV-MPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLC 265

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY------------------- 309
           +A++DMY KCGSV+ + K+F+ +    V ++T M+ G AK                    
Sbjct: 266 NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIA 325

Query: 310 ------------GLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
                       G  + +L +FNE+ +S+  KP++VT V  L AC+  G +D G   +  
Sbjct: 326 AWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHV 384

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
             ++ GI+ +    + +VDM  + G L++A ++  S++   +    +W  +++   +HGR
Sbjct: 385 YIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE---ERDVYVWSAMIAGLGMHGR 441

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNT 444
              A++   ++ E+  +V    VT +N 
Sbjct: 442 GKAAIDLFFEMQEA--KVKPNSVTFTNV 467



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 169/362 (46%), Gaps = 13/362 (3%)

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P I+L  F  +  NL++ N    +T+ K CS    L   K++H  +   G  ++    S 
Sbjct: 7   PSISLQNFSTLNNNLLFRNHQILSTIDK-CSSSKQL---KEVHARMLRTGLFFDPFSASK 62

Query: 169 L--VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           L         + +D AR +FD +   N+ +W ++I A+A ++   ++  +F +   +  D
Sbjct: 63  LFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCED 122

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+     VI A + L     G   HG+ ++     +  + ++LV  Y  CG ++ +++
Sbjct: 123 LPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAER 182

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F  IS   VV++ SMI   A+      +L+LF +M    + PN VT VGVL AC+    
Sbjct: 183 LFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLD 242

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           ++ G      + RK GI  D      ++DM  + G +D+A KL   +   P+     W  
Sbjct: 243 LEFGRWVCSYIERK-GIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEM---PERDVFSWTI 298

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           +L      G  D A    N +    +++A A+  L + Y   G+ +   ++ +E++ + I
Sbjct: 299 MLDGYAKMGDYDAARLVFNAM--PVKEIA-AWNVLISAYEQNGKPKEALAIFNELQLSKI 355

Query: 467 HK 468
            K
Sbjct: 356 AK 357


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/623 (35%), Positives = 351/623 (56%), Gaps = 40/623 (6%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV 73
           AA ++  ++   S   +   I  L +C  +     +  +I +   +S     N LI  Y+
Sbjct: 309 AAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVS----WNALITGYM 364

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           +      A++LFD+M   N +S+  ++AGY   G+ + AL L Q++  + + P+  +  +
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC----------------- 176
           +  ACS +  L TG Q+H+     G Q+N   C++L+ MYGKC                 
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 177 -------------NDV-DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                        ND+ D AR  FD M  R+ VSWT+II A+A   Q +EA+  F+   +
Sbjct: 485 IVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTM-F 543

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
              + PN  +L  ++  C SLG    G+  H V ++ G +   +VA+AL+ MY KCG  +
Sbjct: 544 CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD 603

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S ++F+ +    + T+ ++I G A++GLGR ++ ++  M S G+ PN+VTFVG+L+ACS
Sbjct: 604 -SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLVDEG +   SM + YG+ P  +HY C+VD+LGRTG +  A +    + ++PD   +
Sbjct: 663 HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD--TV 720

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A ++H   +I   A+ +L       A  YV LSN Y+  G W  V  +R  MK
Sbjct: 721 IWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMK 780

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
           + G+ KEPGCSW +I+D+ ++F  G+   E+  E+++ L EL   +K  GYV   T  V 
Sbjct: 781 QQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYV-PDTEFVL 839

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+++E +E  +  HSE+LA+A+ L++ PKG+ I+I+KNLR+C DCH   K +S + +R 
Sbjct: 840 HDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQ 899

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
             +RD NRFHHFRNGSCSC DFW
Sbjct: 900 IDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 168/363 (46%), Gaps = 46/363 (12%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT   N +I+CYV+     +AR+LFD M   +V S+ S++ GY +  Q   A  LF+KM 
Sbjct: 126 NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMP 185

Query: 121 G-NLV-W-----------------------------PNEFTFATVIKACSMLADLITGKQ 149
             NLV W                             P++  FA+ + A   L +L   + 
Sbjct: 186 ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLES 245

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDV-DGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           +       GF+ ++V+ ++++++Y +   V D A + F+ M  RN  +W+++I A +   
Sbjct: 246 LRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGG 305

Query: 209 QGHEALEMFREFNYQSRDRPNQHML--ASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           +   A+ ++       RD P + +    ++I   A  GR+   ++    +     E   V
Sbjct: 306 RIDAAIAVYE------RD-PVKSIACRTALITGLAQCGRIDDARILFEQIP----EPIVV 354

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+  Y + G VN + ++F+++   + +++  MI G A+ G    +L L  E+   G
Sbjct: 355 SWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSG 414

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + P+  +   +  ACS+   ++ G Q + S+  K G   ++     ++ M G+   ++ A
Sbjct: 415 MLPSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 387 YKL 389
            ++
Sbjct: 474 RQV 476



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 182/423 (43%), Gaps = 83/423 (19%)

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           RL +   AR++FD M   +++++ S+++ Y + G P  A  L+  + G     N  T A 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG----NMRTGAI 101

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++     L  ++  +++   +     + N V  ++++  Y +  D+  ARR+FD M  R+
Sbjct: 102 LLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFRE----------------------------FNYQSR 225
           V SW S++  +  + Q  +A  +F +                            F    R
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR 217

Query: 226 D--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           +   P+Q   AS ++A   LG L   +    + +++G E + V+ +A++++Y++      
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSR------ 271

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
                           TS++  A K+         F  MI R    N+ T+  ++ A SH
Sbjct: 272 ---------------DTSVLDTAIKF---------FESMIER----NEYTWSTMIAALSH 303

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G +D  I    ++Y +  +   A   T ++  L + GR+D+A  L + I   P+   + 
Sbjct: 304 GGRIDAAI----AVYERDPVKSIACR-TALITGLAQCGRIDDARILFEQI---PEPIVVS 355

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W  L++    +G V+ A E  +++   N     ++  +   YA  G  E    L  E+ R
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRN---TISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 464 TGI 466
           +G+
Sbjct: 413 SGM 415



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 47/289 (16%)

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           CS+ +   G+   V  AR VFD M  R++++W S+I A+  N     A ++     Y + 
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDL-----YDAI 91

Query: 226 DRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              N    A +++    LGR++   +V  G++ R     N V  +A++  Y + G +  +
Sbjct: 92  SGGNMRTGAILLSGYGRLGRVLEARRVFDGMLER-----NTVAWNAMISCYVQNGDITMA 146

Query: 285 DKVFNRISNPSVVTYTSMIVGAAK--------------------------YGLGRF---- 314
            ++F+ + +  V ++ SM+ G                              G GR     
Sbjct: 147 RRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG 206

Query: 315 -SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            + D+F +M   G+ P+   F   L A    G +D  ++ L  +  K G   D    T +
Sbjct: 207 KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAI 265

Query: 374 VDMLGR-TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           +++  R T  LD A K  +S+    +     W T+++A    GR+D A+
Sbjct: 266 LNVYSRDTSVLDTAIKFFESM---IERNEYTWSTMIAALSHGGRIDAAI 311


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 349/582 (59%), Gaps = 39/582 (6%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + N  T N LI+ Y++  + ++A   F++M + ++VS+ S+++GY   G    AL +F K
Sbjct: 205 VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSK 264

Query: 119 MLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHI-----ETFGF------------- 159
           ML    + P+ FT A+++ AC+ L  L  GKQIH +I     ET G              
Sbjct: 265 MLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 160 ---------------QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
                            N++  +SL+D Y K  +V  AR +F+ +  R+VV+WT++IV +
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN   ++ALE+FR         PN + LA++++  +SL  L  GK  H   +++G    
Sbjct: 385 VQNGLWNDALELFR-LMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V +AL+ MYAK G++N + +VF+  +    +V++TSMI+  A++GLG+ +++LF  M+
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           S G+KP+ +T+VGVL AC+H GLV++G ++ + M   + I P   HY C++D+ GR G L
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            EAY   +S+ ++PD   + WG+LL++ ++H   D+A  A+ +L+  +   + AY+ L+N
Sbjct: 564 QEAYLFIESMPIEPDN--IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALAN 621

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            Y+  G+WEN    R  MK  G+ KE G SW+ I+++ +AF   + +  +  E+  L+ E
Sbjct: 622 VYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAE 681

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +  ++K+ G++   T  V  D+E+E +E+I+  HSE+LA+AFGL++ P+   +RIMKNLR
Sbjct: 682 IWEEIKKMGFIP-DTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLR 740

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   K IS +V R+ +VRD  RFHHF++GSCSC D+W
Sbjct: 741 VCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 104/492 (21%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGF----------------------- 58
           N  +S    AH +Q     K   +  SVH +I+K G                        
Sbjct: 5   NSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFA 64

Query: 59  --------LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
                   L +TF+ N LI+ Y +    +V+R+L  EM + + VS+T+++ GY   G   
Sbjct: 65  HHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFD 124

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
            A+ +F KM+   V P++FT + V+ +C+    L  G++IH+ +   G    + V +SL+
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 171 DMYGKCNDVDGARRVFDLMGCRN-------------------------------VVSWTS 199
           +MY KC D   A+ VFD M  +N                               +VSW S
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +I  ++Q     EAL +F +   +   +P+   LAS+++ACA+L +L  GK  H  ++R+
Sbjct: 245 MISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 260 GCEFNDVVASALVDMYAKC---------------------------------GSVNYSDK 286
             E +  V +AL+ MYAK                                  G+V  + +
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +FN++ +  VV +T+MIVG  + GL   +L+LF  M++ G +PN  T   +L   S   +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 347 VDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-- 403
           ++ G Q H  ++       P   +   ++ M  +TG ++    +AK +   P+G   +  
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNIN----VAKRVFDLPNGKKEIVS 478

Query: 404 WGTLLSASRLHG 415
           W +++ A   HG
Sbjct: 479 WTSMIMALAQHG 490



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 65/296 (21%)

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
           +GN    +EF FA +++    + D   G+ +H  I   G    + + ++L+  Y K   +
Sbjct: 3   VGNSPTSSEF-FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSL 61

Query: 180 DGARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNA 208
             A  VFD M  ++                                VSWT+IIV + Q  
Sbjct: 62  RFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFG 121

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
               A+ MF +     R  P+Q  +++V+++CA+   L  G+  H  VV+ G      VA
Sbjct: 122 LFDNAIWMFAKM-ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-------------------------------NPSVV 297
           ++L++MYAKCG    +  VF+R++                               +  +V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           ++ SMI G ++ G    +L +F++M++   +KP++ T   +L AC++   ++ G Q
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN----VVSYTSLMAGYI 104
           +H+  +K+G  S     N LI  Y +     VA+++FD    PN    +VS+TS++    
Sbjct: 431 IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD---LPNGKKEIVSWTSMIMALA 487

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNL 163
             G  + A+ LF++ML   + P+  T+  V+ AC+ +  +  G++ +  + E    +  L
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
              + ++D+YG+   +  A    + M    + ++W S++ +
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 70/635 (11%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ---VARQLFDEMLEPNV 93
           LQ    L  +  +H+ I+K+    N F L  L+              AR +FDE+  P+ 
Sbjct: 10  LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDT 69

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHT 152
             + +++  Y+N   PQ ++ LF +M      P + ++ + VI+AC  L D   G+++HT
Sbjct: 70  FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 129

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV--------------------------- 185
            +   G   +L V ++L++MY K  D++ AR +                           
Sbjct: 130 QVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINL 189

Query: 186 ----FDLMGCRNVVSW-------------------------------TSIIVAHAQNAQG 210
               FD M  R++VSW                               +S+I A+A+  Q 
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           +EAL +F E    +   P++  + SV++AC  +G L  GK+ H  + R+  E +  + ++
Sbjct: 250 NEALRLFHEMQLANV-LPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTS 308

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           LVDMYAKCG ++ S +VFN ++N  V  +++MI+G A +G G  +LD F++MIS  IKPN
Sbjct: 309 LVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPN 368

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           DVTF+GVL ACSH GLVDEG  +  SM + Y + P  +HY CVVD+LGR GRL EA +L 
Sbjct: 369 DVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELI 428

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           KS+   PD   ++W  LL A R++  V+IA EA+  L+E    V   YV LSN Y+ A E
Sbjct: 429 KSMPFAPDA--IVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKE 486

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W+ V ++R  MK   I K PG S +E+ +  + F AG+       ++L +L E+  ++K 
Sbjct: 487 WDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKA 546

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GY    T  V  D +++ +E  +  HSE+LA+AFGL+S   G TIRI+KNLR+C DCH 
Sbjct: 547 NGY-APLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHI 605

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             KLIS   +R  +VRD NRFHHF NGSCSC D+W
Sbjct: 606 AIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 322/572 (56%), Gaps = 5/572 (0%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           I    + K+L    ++HS + +S    + F LN LI+ Y +      AR +FD +   +V
Sbjct: 69  ITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDV 128

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T L+ GY     P  AL L   ML     P+ FTF + +KA         G+Q+H  
Sbjct: 129 VSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHAL 188

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
              +    ++ V S+L+DMY +C  +D A RVFD +  +N VSW ++I   A+   G   
Sbjct: 189 AVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETT 248

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L  F E              +SV +A A +G L  G+  H  +++SG +    VA+ ++ 
Sbjct: 249 LMKFAEMQRNGFG-ATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILG 307

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAK GS+  + KVF+R+    +VT+ +M+   A+YGLG+ ++  F E+   GI+ N +T
Sbjct: 308 MYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQIT 367

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ VL ACSH GLV EG Q+ D M + Y + P+  HY   VD+LGR G L EA      +
Sbjct: 368 FLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKM 426

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P     +WG LL A R+H    I   A++ + E + +     V L N YA  G+W++
Sbjct: 427 PMEPTAA--VWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDD 484

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  MK TG+ KEP CSWVEI +  + F A ++   +  E+  +  E+  ++K+ GY
Sbjct: 485 AARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGY 544

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V + ++++ RE  +  HSE++ALAF LI++P G TIRIMKN+R+C DCH  F+
Sbjct: 545 VP-NTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFR 603

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S++ +R+ VVRD NRFHHF NGSCSCGD+W
Sbjct: 604 YVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 147/291 (50%), Gaps = 7/291 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    + ++I AC+   +L   + IH+H+       +  + +SL+ MY KC  V  AR V
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHV 119

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD +  R+VVSWT +I  +AQN    EAL +  +   ++R RP+     S + A  + G 
Sbjct: 120 FDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDM-LRARFRPSGFTFTSFLKAAGACGG 178

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  H + V+   + +  V SAL+DMYA+C  ++ + +VF+ + + + V++ ++I G
Sbjct: 179 RGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAG 238

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G G  +L  F EM   G      T+  V  A +  G +++G + + +   K G   
Sbjct: 239 FARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG-RWVHAHMIKSGQKL 297

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHG 415
            A     ++ M  ++G + +A K+   + Q D     + W T+L+A   +G
Sbjct: 298 TAFVANTILGMYAKSGSMVDARKVFDRVDQRD----LVTWNTMLTAFAQYG 344


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 338/593 (56%), Gaps = 35/593 (5%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           SL   H+ ++K G   +      L++ Y + +     R LFDE    ++  Y+SL+A   
Sbjct: 21  SLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVS 80

Query: 105 NMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +   P++ L L ++ML  + + P+ F  A++  A + L  L  GKQ+H H     +  + 
Sbjct: 81  HSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDD 140

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---- 219
           VV SSL+DMY KC   D AR+VFD +  +N V WT++I  +  N +  EALE+FR     
Sbjct: 141 VVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGR 200

Query: 220 ------------------------FNYQSRDR---PNQHMLASVINACASLGRLVSGKVA 252
                                   F    RD     +  +L+S I   A L   V G+  
Sbjct: 201 TLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQL 260

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H + +R G   + +V +A+VDMY+KC  ++ + +VF  I+   ++++T+M+VG A++G  
Sbjct: 261 HSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRA 320

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
             +  L++ M+  G+KPN+VTFVG+++ACSH+GLV +G Q  DSM  +YGI P  +HYTC
Sbjct: 321 EEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTC 380

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
            +D+L R+G L EA +L  ++   PD     W +LLSA + +   ++++  ++ L+E   
Sbjct: 381 YLDLLSRSGHLAEAEELITTMPYVPDEA--TWASLLSACKKYNNAEMSIRVADNLLELRP 438

Query: 433 QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFE 492
           +  + YV LSN YA+ G+W++V ++R  M    I KEPG SW+E+  +   F+AG    +
Sbjct: 439 KYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPID 498

Query: 493 RGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPK 552
              E+L  L EL  +M++RGYV   T  V  D+E+  +E  + LHSERLA+AFG++  P 
Sbjct: 499 LREEILGFLEELVSEMRQRGYV-PDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPL 557

Query: 553 GITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G  IR++KNLR+C DCH V K IS+I +R  +VRD +RFHHF  G CSC +FW
Sbjct: 558 GSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 331/579 (57%), Gaps = 24/579 (4%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLK--------------------KTQVARQLFD 86
           AS+H+  ++SG  ++ FT N L+N  ++L                       +  R++FD
Sbjct: 69  ASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFD 128

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           EMLE + VS+ +L+ G     + Q AL + ++M  +   P+ FT +TV+   +  AD+  
Sbjct: 129 EMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKR 188

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G  +H +    GF  ++ V SSL+DMY  C  +D + +VFD     + V W S++  +AQ
Sbjct: 189 GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQ 248

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    EAL +FR    Q+  RP     +S+I A  +L  L  GK  H  ++R+    N  
Sbjct: 249 NGSVEEALGIFRRM-LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIF 307

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           ++S+L+DMY KCG+V+ + +VFN I +P +V++T+MI+G A +G    +  LF  M    
Sbjct: 308 ISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGN 367

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +KPN +TF+ VL ACSH+GLVD G ++ +SM  +YG +P  +H   + D LGR G LDEA
Sbjct: 368 VKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 427

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y     +++ P     +W TLL A R+H    +A E + ++ E   +   ++V LSN Y+
Sbjct: 428 YNFISEMKIKPTSS--VWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 485

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            +G W     LR  M+  G+ KEP CSW+E++++ + F A +        ++  L     
Sbjct: 486 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSE 545

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +M  +GYV      V  D+E+E + E++  HSE+LA+ FG+IS P G TIR+MKNLR+C 
Sbjct: 546 QMIRQGYVPNMED-VLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCV 604

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH   K IS IV R+ VVRDVNRFH F++G+CSCGDFW
Sbjct: 605 DCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 172/361 (47%), Gaps = 44/361 (12%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           EC  +     VH   +K+GF ++ F  + LI+ Y    +   + ++FD   + + V + S
Sbjct: 182 ECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNS 241

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++AGY   G  + AL +F++ML   V P   TF+++I A   L+ L  GKQ+H ++    
Sbjct: 242 MLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRAR 301

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F  N+ + SSL+DMY KC +VD ARRVF+ +   ++VSWT++I+ +A +    EA  +F 
Sbjct: 302 FNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFE 361

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAK 277
                +  +PN     +V+ AC+  G + +G K  + +  + G   +    +AL D   +
Sbjct: 362 RMELGNV-KPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGR 420

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
            G +   D+ +N IS                            EM    IKP    +  +
Sbjct: 421 AGDL---DEAYNFIS----------------------------EM---KIKPTSSVWSTL 446

Query: 338 LHAC---SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           L AC    ++ L +E  + +  +  K         +  + +M   +GR +EA +L KS++
Sbjct: 447 LRACRVHKNTVLAEEVAKKIFELEPK-----SMGSHVILSNMYSASGRWNEAAQLRKSMR 501

Query: 395 V 395
           +
Sbjct: 502 I 502



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 25/256 (9%)

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN-QHMLASVINACASLGRLVSGKVAHG 254
           SW   I   A   Q   A+ +F +       R +    L + + +CA LG        H 
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYS--------------------DKVFNRISNP 294
           + +RSG   +   A+AL+++  K    ++                      KVF+ +   
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
             V++ ++I+G A++   + +L +  EM   G  P+  T   VL   +    +  G+  +
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMV-V 192

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
                K G   D    + ++DM     ++D + K+  S     D   +LW ++L+    +
Sbjct: 193 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS---DCDAVLWNSMLAGYAQN 249

Query: 415 GRVDIAVEASNQLIES 430
           G V+ A+    +++++
Sbjct: 250 GSVEEALGIFRRMLQA 265


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 319/558 (57%), Gaps = 5/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H+ +  S F  + F  N LI+ Y +      AR++FD M   ++ S+TSL+AGY    
Sbjct: 85  AIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQND 144

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            P  AL L   ML     PN FTFA+++KA    A    G+QIH     + +  ++ V S
Sbjct: 145 MPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGS 204

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G   L MF E      + 
Sbjct: 205 ALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFE- 263

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
                 +SV +A A +G L  GK  H  +++SG   +  V + ++DMYAK GS+  + KV
Sbjct: 264 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 323

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+R+    VVT+ SM+   A+YGLGR ++  F EM   G+  N +TF+ +L ACSH GLV
Sbjct: 324 FDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 383

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG Q+ D M ++Y + P+  HY  VVD+LGR G L++A      + + P     +WG L
Sbjct: 384 KEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAA--VWGAL 440

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L + R+H    I   A++ + E +       V L N YA  G+W+    +R  MK TG+ 
Sbjct: 441 LGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVK 500

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEP CSWVEI +  + F A +    R  E+     E+  ++++ GYV   T  V + V++
Sbjct: 501 KEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVP-NTDYVLLHVDE 559

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + R+  +  HSE++ALAF LI++P G TIRIMKN+R+C DCH  F+ IS + +R+ VVRD
Sbjct: 560 QERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRD 619

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFHHF +GSCSCGD+W
Sbjct: 620 TNRFHHFSSGSCSCGDYW 637



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 5/285 (1%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + ++I AC+    L   + IH H+    F  ++ + +SL+ +Y KC  V  ARRVFD M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R++ SWTS+I  +AQN    EAL +      + R +PN    AS++ A  +      G+
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGM-LRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H + V+     +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G A+ G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
            G  +L +F EM   G +    T+  V  A +  G +++G + + +   K G    A   
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFVG 304

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
             ++DM  ++G + +A K+   +        + W ++L+A   +G
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVD---KKDVVTWNSMLTAFAQYG 346


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 353/605 (58%), Gaps = 8/605 (1%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSN 61
              N  F  A SS  +        T+      LQ C  L ++     VH  ++K GF   
Sbjct: 151 FAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCE 210

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
            F  ++L + Y +  +   A + F+EM   + V +TS++ G++  G  + AL  + KM+ 
Sbjct: 211 LFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVT 270

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           + V+ ++    + + ACS L     GK +H  I   GF+Y   + ++L DMY K  D+  
Sbjct: 271 DDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVS 330

Query: 182 ARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
           A  VF +   C ++VS T+II  + +  Q  +AL  F +   +  + PN+    S+I AC
Sbjct: 331 ASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIE-PNEFTFTSLIKAC 389

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A+  +L  G   HG VV+   + +  V+S LVDMY KCG  ++S ++F+ I NP  + + 
Sbjct: 390 ANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWN 449

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +++   +++GLGR +++ FN MI RG+KPN VTFV +L  CSH+G+V++G+ +  SM + 
Sbjct: 450 TLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKI 509

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           YG++P  +HY+CV+D+LGR G+L EA     ++  +P+     W + L A ++HG ++ A
Sbjct: 510 YGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPN--VFGWCSFLGACKIHGDMERA 567

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+++L++   + + A+V LSN YA   +WE+V SLR  +K   ++K PG SWV+IR++
Sbjct: 568 KFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNK 627

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
           T+ F   +    +  E+   L  L  ++K  GYV  +T  V +D++D  +E+++  HSER
Sbjct: 628 THVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYV-PQTESVLIDMDDNLKEKLLHYHSER 686

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           +A+AF L++ P G+ I + KNLR+C DCH   K IS + ER+ +VRD++RFHHF NGSCS
Sbjct: 687 IAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCS 746

Query: 601 CGDFW 605
           CGD+W
Sbjct: 747 CGDYW 751



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 230/455 (50%), Gaps = 7/455 (1%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           F+   +     +K S   T AH IQ     K L     +H+ +++ G L NTF  NH +N
Sbjct: 59  FSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLN 118

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
            Y +  +     +LFD+M + N+VS+TS++ G+ +  + Q AL  F +M        +F 
Sbjct: 119 LYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFA 178

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            ++V++AC+ L  +  G Q+H  +   GF   L V S+L DMY KC ++  A + F+ M 
Sbjct: 179 LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMP 238

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
           C++ V WTS+I    +N    +AL  + +         +QH+L S ++AC++L     GK
Sbjct: 239 CKDAVLWTSMIDGFVKNGDFKKALTAYMKM-VTDDVFIDQHVLCSTLSACSALKASSFGK 297

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVGAAKY 309
             H  +++ G E+   + +AL DMY+K G +  +  VF   S+  S+V+ T++I G  + 
Sbjct: 298 SLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEM 357

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
                +L  F ++  RGI+PN+ TF  ++ AC++   ++ G Q L     K+    D   
Sbjct: 358 DQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQ-LHGQVVKFNFKRDPFV 416

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
            + +VDM G+ G  D + +L   I+ +PD   + W TL+     HG    A+E  N +I 
Sbjct: 417 SSTLVDMYGKCGLFDHSIQLFDEIE-NPD--EIAWNTLVGVFSQHGLGRNAIETFNGMIH 473

Query: 430 SN-QQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
              +  A  +V L    + AG  E+  +  S M++
Sbjct: 474 RGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEK 508


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/557 (38%), Positives = 331/557 (59%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  +++S F  +    N L+N Y +    + AR++FD+M E + V++T+L++GY    +
Sbjct: 73  VHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDR 132

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL+LF +ML     PNEFT ++VIKA +       G Q+H      GF  N+ V S+
Sbjct: 133 PFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSA 192

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y +   +D A+ VFD +  RN VSW ++I  HA+     +ALE+F+    +   RP
Sbjct: 193 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGM-LREGFRP 251

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +    AS+  AC+S G L  GK  H  +++SG +      + L+DMYAK GS++ + K+F
Sbjct: 252 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 311

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R++   VV++ S++   A++G G  ++  F EM   GI+PN+++F+ VL ACSHSGL+D
Sbjct: 312 DRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLD 371

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG  + + M +K GI+ +A HY  +VD+LGR G L+ A +  + + ++P     +W  LL
Sbjct: 372 EGWHYYELM-KKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAA--IWKALL 428

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H   ++   A+  + E +      +V L N YA  G W +   +R +MK +G+ K
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP CSWVEI +  + F A +    +  E+     E+  K+KE GYV   T  V V V+ +
Sbjct: 489 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV-PDTSHVIVHVDQQ 547

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            RE  +  HSE++ALAF L++ P G TI I KN+R+C DCH   KL S  V R+ +VRD 
Sbjct: 548 EREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDT 607

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++G+CSC D+W
Sbjct: 608 NRFHHFKDGACSCKDYW 624



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 165/298 (55%), Gaps = 19/298 (6%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + T++K C++   L  G+ +H H+    F+++LV+ ++L++MY KC  ++ AR+VFD M 
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMP 113

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFRE---FNYQSRDRPNQHMLASVINACASLGRLV 247
            R+ V+WT++I  ++Q+ +  +AL +F +   F +     PN+  L+SVI A A+  R  
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFS----PNEFTLSSVIKAAAAERRGC 169

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G   HG  V+ G + N  V SAL+D+Y + G ++ +  VF+ + + + V++ ++I G A
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 229

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           +      +L+LF  M+  G +P+  ++  +  ACS +G +++G + + +   K G    A
Sbjct: 230 RRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVA 288

Query: 368 KHYTCVVDMLGRTGRLDEAYK----LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
                ++DM  ++G + +A K    LAK   V        W +LL+A   HG  + AV
Sbjct: 289 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-------WNSLLTAYAQHGFGNEAV 339



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           +++  C     L  G++ HG +++S    + V+ + L++MYAKCGS+  + KVF+++   
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
             VT+T++I G +++     +L LFN+M+  G  PN+ T   V+ A +       G Q L
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ-L 174

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
                K G   +    + ++D+  R G +D+A  +  +++   D   + W  L++     
Sbjct: 175 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND---VSWNALIAGHARR 231

Query: 415 GRVDIAVEASNQLIESNQQVAN-AYVTL-----SNTYALAGEWENVHSLRSEMK 462
              + A+E    ++    + ++ +Y +L     S  +   G+W + + ++S  K
Sbjct: 232 CGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 285


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 343/558 (61%), Gaps = 5/558 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLI-NCYVR-LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           H+ ILK G   ++F  ++L+  C +        A  +F +M EP    + ++M G++   
Sbjct: 8   HARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDM 67

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL+ +++M    V P+ FT+ T++KAC+ L  +  G Q+H HI   G + ++ V +
Sbjct: 68  NTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQN 127

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MYGKC ++     VF+ M  R+V SW+++I AHA      + L +  + + +   R
Sbjct: 128 SLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWR 187

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             + +L SV++AC  LG L  G+  HG ++R+    N +V ++L++MY KCG +     +
Sbjct: 188 AEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCL 247

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F +++  + ++Y+ MI G A +G GR  L +F EM+ +G++P+D+ +VGVL+ACSH+GLV
Sbjct: 248 FQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLV 307

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG+Q  + M  ++GI P  +HY C+VD++GR G++DEA +L KS+ ++P+   +LW +L
Sbjct: 308 QEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPN--DVLWRSL 365

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           LSAS++H  +     A+ QL + + Q A+ YV LSN YA A  WE+V   R+ M   G+ 
Sbjct: 366 LSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLS 425

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           + PG S VE++ + + F + +A   +   V  +L ++E ++K  GY    T  V  DV++
Sbjct: 426 QRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQ-VLCDVDE 484

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +++ +  HS++LA+A+ LI   +G  +RI++NLRMC DCH   KLIS I +R+  VRD
Sbjct: 485 EEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRD 544

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF++G+CSC D+W
Sbjct: 545 RHRFHHFKDGACSCRDYW 562



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 134/282 (47%), Gaps = 25/282 (8%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L ++     VH+ ILK G  ++ F  N LI+ Y +  +  V   +F++M E +V
Sbjct: 95  LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 154

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHT 152
            S+++L+  + ++G     L L   M     W   E    +V+ AC+ L  L  G+ +H 
Sbjct: 155 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 214

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            +       N++V +SL++MY KC  +     +F  M  +N +S++ +I   A +  G E
Sbjct: 215 FLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 274

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------KVAHGV---VVRSGCE 262
            L +F E   Q  + P+  +   V+NAC+  G +  G       K+ HG+   +   GC 
Sbjct: 275 GLRIFTEMLEQGLE-PDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGC- 332

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
                   +VD+  + G ++ + ++   +   P+ V + S++
Sbjct: 333 --------MVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLL 366


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 340/559 (60%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           + +  + SG+ S++   N LIN Y +    + AR++FD +   +V+++ ++++GY   G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LFQ+M  N   PN  TF  ++ AC+ L DL  G+ IH  ++  G++ +LV+ + 
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNV 304

Query: 169 LVDMYGKCND-VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L++MY KC+  ++ AR+VF+ +  R+V++W  +IVA+ Q  Q  +AL++F++   ++   
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV-A 363

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+  L++V++ACA LG    GK  H ++    C+ + V+ ++L++MY +CGS++ +  V
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  I + S+V+++++I   A++G  R  L+ F E++  G+  +DVT V  L ACSH G++
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG+Q   SM   +G+ PD +H+ C+VD+L R GRL+ A  L   +   PD   + W +L
Sbjct: 484 KEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDA--VAWTSL 541

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVT-LSNTYALAGEWENVHSLRSEMKRTGI 466
           LS  +LH     A   +++L E   +  ++ VT LSN YA AG W++V   R+   R   
Sbjct: 542 LSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAA 598

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGCS++EI D  + F AG+        + + ++ L ++MK+ GYV     +V  +V+
Sbjct: 599 RKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYV-PDMRMVLHNVK 657

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSE+LA+A+GLIS P G  + I+KNLR C DCH   K IS IV R  VVR
Sbjct: 658 EEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVR 717

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFHHF NGSCSC D+W
Sbjct: 718 DSTRFHHFENGSCSCKDYW 736



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 203/367 (55%), Gaps = 10/367 (2%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  +  PN VS+T ++A +   G  + AL  +++M+   + P+   F   I  CS 
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSS 70

Query: 141 LADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199
             DL  G+ +H  I ET   ++++++ ++L+ MY +C D++ AR+ FD MG + +V+W +
Sbjct: 71  SKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNA 130

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           +I  +++N     AL+++++   +S +  +P+    +S + AC+ +G +  G+      V
Sbjct: 131 LIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTV 190

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            SG   + +V +AL++MY+KCGS+  + KVF+R+ N  V+ + +MI G AK G    +L+
Sbjct: 191 ASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M     KPN VTF+G+L AC++   +++G + +    +++G   D      +++M 
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYESDLVIGNVLLNMY 309

Query: 378 GR-TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
            + +  L+EA ++ + ++       + W  L+ A   +G+   A++   Q+   N  VA 
Sbjct: 310 TKCSSSLEEARQVFERLRTRD---VITWNILIVAYVQYGQAKDALDIFKQMQLEN--VAP 364

Query: 437 AYVTLSN 443
             +TLSN
Sbjct: 365 NEITLSN 371



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 134/255 (52%), Gaps = 9/255 (3%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MYGKC  V  A  VF  +   N VSWT I+ A A+N    EAL  +R    +   RP+  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGA 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           M    I  C+S   L  G++ H +++ +   EF+ ++ +AL+ MYA+C  +  + K F+ 
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR---GIKPNDVTFVGVLHACSHSGLV 347
           +   ++VT+ ++I G ++ G  R +L ++ +M+S+   G+KP+ +TF   L+ACS  G +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            +G + +++     G   D+     +++M  + G L+ A K+   ++   +   + W T+
Sbjct: 180 SQG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK---NRDVIAWNTM 235

Query: 408 LSASRLHGRVDIAVE 422
           +S     G    A+E
Sbjct: 236 ISGYAKQGAATQALE 250



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH+ I      ++    N L+N Y R         +F  + + ++VS+++L+A Y   G
Sbjct: 387 AVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI---ETFGFQYNLV 164
             +  L  F ++L   +  ++ T  + + ACS    L  G Q    +         Y   
Sbjct: 447 HSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHF 506

Query: 165 VCSSLVDMYGKCNDVDGARR-VFDLMGCRNVVSWTSII 201
           +C  +VD+  +   ++ A   + D+    + V+WTS++
Sbjct: 507 LC--MVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLL 542


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 339/559 (60%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           + +  + SG+ S++   N LIN Y +    + AR++FD +   +V+++ ++++GY   G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LFQ+M  N   PN  TF  ++ AC+ L DL  G+ IH  +   G++ +LV+ + 
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 169 LVDMYGKCND-VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L++MY KC+  ++ AR+VF+ M  R+V++W  +IVA+ Q  Q  +AL++F++   ++   
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV-A 363

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+  L++V++ACA LG    GK  H ++    C+ + V+ ++L++MY +CGS++ +  V
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  I + S+V+++++I   A++G  R  L+ F E++  G+  +DVT V  L ACSH G++
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG+Q   SM   +G+ PD +H+ C+VD+L R GRL+ A  L   +   PD   + W +L
Sbjct: 484 KEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDA--VAWTSL 541

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVT-LSNTYALAGEWENVHSLRSEMKRTGI 466
           LS  +LH     A   +++L E   +  ++ VT LSN YA AG W++V   R+   R   
Sbjct: 542 LSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAA 598

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGCS++EI D  + F AG+        + + ++ L ++MK+ GYV     +V  +V+
Sbjct: 599 RKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYV-PDMRMVLHNVK 657

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSE+LA+A+GLIS P G  + I+KNLR C DCH   K IS IV R  VVR
Sbjct: 658 EEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVR 717

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFHHF NGSCSC D+W
Sbjct: 718 DSTRFHHFENGSCSCKDYW 736



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 201/367 (54%), Gaps = 10/367 (2%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  +  PN VS+T ++A +   G  + AL  +++M+   + P+   F   I  CS 
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSS 70

Query: 141 LADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199
             DL  G+ +H  I ET   ++++++ ++L+ MY +C D++ AR+ FD MG + +V+W +
Sbjct: 71  SKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNA 130

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           +I  +++N     AL+++++   +S +  +P+    +S + AC  +G +  G+      V
Sbjct: 131 LIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTV 190

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            SG   + +V +AL++MY+KCGS+  + KVF+R+ N  V+ + +MI G AK G    +L+
Sbjct: 191 ASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M     KPN VTF+G+L AC++   +++G + +    R+ G   D      +++M 
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVREDGYESDLVIGNVLLNMY 309

Query: 378 GR-TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
            + +  L+EA ++ + ++       + W  L+ A   +G+   A++   Q+   N  VA 
Sbjct: 310 TKCSSSLEEARQVFERMRTRD---VITWNILIVAYVQYGQAKDALDIFKQMQLEN--VAP 364

Query: 437 AYVTLSN 443
             +TLSN
Sbjct: 365 NEITLSN 371



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 9/255 (3%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MYGKC  V  A  VF  +   N VSWT I+ A A+N    EAL  +R    +   RP+  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGA 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           M    I  C+S   L  G++ H +++ +   EF+ ++ +AL+ MYA+C  +  + K F+ 
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR---GIKPNDVTFVGVLHACSHSGLV 347
           +   ++VT+ ++I G ++ G  R +L ++ +M+S+   G+KP+ +TF   L+AC+  G +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            +G + +++     G   D+     +++M  + G L+ A K+   ++   +   + W T+
Sbjct: 180 SQG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK---NRDVIAWNTM 235

Query: 408 LSASRLHGRVDIAVE 422
           +S     G    A+E
Sbjct: 236 ISGYAKQGAATQALE 250



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 146/279 (52%), Gaps = 7/279 (2%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKT-QVARQLFDEM 88
           FI  L  C +L  L    ++H ++ + G+ S+    N L+N Y +   + + ARQ+F+ M
Sbjct: 267 FIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERM 326

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              +V+++  L+  Y+  GQ + AL +F++M    V PNE T + V+ AC++L     GK
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H  I +   + ++V+ +SL++MY +C  +D    VF  +  +++VSW+++I A+AQ+ 
Sbjct: 387 AVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVV 267
                LE F E   Q     +   + S ++AC+  G L  G +    +V   G   +   
Sbjct: 447 HSRTGLEHFWEL-LQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRH 505

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVG 305
              +VD+ ++ G +  ++ + + +   P  V +TS++ G
Sbjct: 506 FLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/547 (38%), Positives = 324/547 (59%), Gaps = 16/547 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I+ Y +      AR+LFDE    +V ++T++++GY+  G    A   F +M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCND 178
                 NE ++       +M+A  +  K++    E F      N+   ++++  YG+  D
Sbjct: 294 EK----NEVSYN------AMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGD 343

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  AR+ FD+M  R+ VSW +II  +AQ+    EAL MF E   Q  +  N+      ++
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK-QDGESLNRATFGCALS 402

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +  L  GK  HG  V+ G      V +AL+ MY KCGS++ ++  F  I    VV+
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +M+ G A++G GR +L +F  M + G+KP+++T VGVL ACSH+GL+D G ++  SM 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG+IP +KHYTC++D+LGR GRL+EA  L +++   P  G   WG LL ASR+HG  +
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP--GAASWGALLGASRIHGNTE 580

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +  +A+  + +   Q +  YV LSN YA +G W +   +RS+M+  G+ K PG SWVE++
Sbjct: 581 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQ 640

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F  G+        + + L EL+ KM+E GYV   T LV  DVE+E +E ++  HS
Sbjct: 641 NKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYV-SLTKLVLHDVEEEEKEHMLKYHS 699

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFG+++IP G  IR+MKNLR+C DCH   K IS IV R  ++RD +RFHHF  G 
Sbjct: 700 EKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGF 759

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 760 CSCGDYW 766



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 130/262 (49%), Gaps = 4/262 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +  E+ +S    N  + N +I  Y ++     AR+ FD M + + VS+ +++AGY   G 
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH 374

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F ++  +    N  TF   +  C+ +A L  GKQIH      G+     V ++
Sbjct: 375 YEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNA 434

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC  +D A   F+ +  ++VVSW +++  +A++  G +AL +F      +  +P
Sbjct: 435 LLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK-TAGVKP 493

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS-DK 286
           ++  +  V++AC+  G L  G +  + +    G        + ++D+  + G +  + D 
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 287 VFNRISNPSVVTYTSMIVGAAK 308
           + N    P   ++ +++ GA++
Sbjct: 554 IRNMPFQPGAASWGALL-GASR 574



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 184/458 (40%), Gaps = 62/458 (13%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISLASVHSEILKSGFLSN 61
           +S+T N    +    + + NK  S H +  H    L     +   +SV    + SG+L N
Sbjct: 34  ESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN 93

Query: 62  T-----------------FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           +                 F+ N ++  YVR  +   AR+LFD M E +VVS+ SL++GY 
Sbjct: 94  SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 105 NMGQPQIALLLFQKML--GNLVWPNEFTF----ATVIKACSMLADLITGKQIHTHIETFG 158
             G    A  +F  M    ++ W            + +AC +         I  +    G
Sbjct: 154 QNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG 213

Query: 159 F-----------------QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           F                   + +  ++++  Y +   +  ARR+FD    R+V +WT+++
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
             + QN    EA   F E   ++    N  +   V      + R    ++   +  R+  
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR----ELFESMPCRNIS 329

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
            +N ++       Y + G +  + K F+ +     V++ ++I G A+ G    +L++F E
Sbjct: 330 SWNTMITG-----YGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG---IIPDAKHYTCVVDML 377
           +   G   N  TF   L  C+    ++ G Q H  ++   YG    + +A     ++ M 
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNA-----LLAMY 439

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            + G +DEA    + I+   +   + W T+L+    HG
Sbjct: 440 FKCGSIDEANDTFEGIE---EKDVVSWNTMLAGYARHG 474



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/401 (20%), Positives = 172/401 (42%), Gaps = 65/401 (16%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N  I+ ++R      A  +F+ M   + VSY ++++GY+   +  +A  LF +M      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------ 106

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P                DL              F +N+++       Y +   +  ARR+
Sbjct: 107 PER--------------DL--------------FSWNVMLTG-----YVRNCRLGDARRL 133

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FDLM  ++VVSW S++  +AQN    EA E+F     ++    N  + A V N       
Sbjct: 134 FDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN------- 186

Query: 246 LVSGKVAHG-VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
              G++    ++  S  +++ +  + L+  + +   +  +  +F+++     +++ +MI 
Sbjct: 187 ---GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMIS 243

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A+ G    +  LF+E  +R +     T+  ++     +G++DE     D M  K  + 
Sbjct: 244 GYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV- 298

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
                Y  ++    +T ++D A +L +S+   P      W T+++    +G++    +A 
Sbjct: 299 ----SYNAMIAGYVQTKKMDIARELFESM---PCRNISSWNTMITG---YGQIGDIAQAR 348

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
                  Q+   ++  +   YA +G +E   ++  E+K+ G
Sbjct: 349 KFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 13/226 (5%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           +A F   L  C  + +L     +H + +K G+ +  F  N L+  Y +      A   F+
Sbjct: 394 RATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFE 453

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            + E +VVS+ +++AGY   G  + AL +F+ M    V P+E T   V+ ACS    L  
Sbjct: 454 GIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDR 513

Query: 147 GKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA- 203
           G +  ++  + +G        + ++D+ G+   ++ A+ +   M  +    SW +++ A 
Sbjct: 514 GTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGAS 573

Query: 204 --HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
             H     G +A EM  +   Q     N  M   + N  A+ GR V
Sbjct: 574 RIHGNTELGEKAAEMVFKMEPQ-----NSGMYVLLSNLYAASGRWV 614


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/606 (35%), Positives = 349/606 (57%), Gaps = 34/606 (5%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   I  LQ  +H+  +  +H++++++G   + F +  L+    +      A ++F    
Sbjct: 49  QKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTH 108

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PNV  YT+L+ G+++ G    A+ L+ +ML   + P+ +  A+++KAC     L  G++
Sbjct: 109 NPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE 168

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG------------------- 190
           +H+     GF  N +V   ++++YGKC ++  ARRVF+ M                    
Sbjct: 169 VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228

Query: 191 -----------CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
                       ++ V WT++I    +N + + ALE FR    ++  RPN+  +  V++A
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV-RPNEFTIVCVLSA 287

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C+ LG L  G+  H  + +   E N  V +AL++MY++CGS++ +  VF+ + +  V+TY
Sbjct: 288 CSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITY 347

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G +  G  R +++LF  M+ R ++P +VTFVGVL+ACSH GLVD G +   SM R
Sbjct: 348 NTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMAR 407

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            Y + P  +HY C+VD+LGR GRL+EAY L +++++ PD   ++ GTLLSA ++H  +++
Sbjct: 408 DYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH--IMLGTLLSACKMHKNLEL 465

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
             + + +L +  Q  +  YV LS+ YA +G+W+    +R++MK  G+ KEPGCS +E+ +
Sbjct: 466 GEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F  G+    +   +   L EL R ++  GY   K  +V  D+ED  +E  + +HSE
Sbjct: 526 EIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKE-VVLQDIEDGEKEWALAMHSE 584

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLA+ +GLIS      IR+MKNLR+C DCH   KLI+ I  R  VVRD NRFH+F NG+C
Sbjct: 585 RLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGAC 644

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 645 SCGDYW 650


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 329/558 (58%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K+ F+ N F  N L++ Y +      AR+LFDEM E + VSY  +++GY   G+
Sbjct: 272 IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 331

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  LF+++        +F FAT++   S   D   G+QIH           ++V +S
Sbjct: 332 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 391

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC   + A  +F  +  R+ V WT++I A+ Q     E L++F +   Q+    
Sbjct: 392 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR-QASVIA 450

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   AS++ A AS+  L  GK  H  +++SG   N    SAL+D+YAKCGS+  + + F
Sbjct: 451 DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 510

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + + ++V++ +MI   A+ G    +L  F EM+  G++P+ V+F+GVL ACSHSGLV+
Sbjct: 511 QEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVE 570

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ H +SM + Y + P  +HY  VVDML R+GR +EA KL   + +DPD   ++W ++L
Sbjct: 571 EGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPD--EIMWSSVL 628

Query: 409 SASRLHGRVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           +A R+H   ++A  A++QL    + + A  YV +SN YA AG+WENV  +   M+  G+ 
Sbjct: 629 NACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVK 688

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K P  SWVEI+ +T+ F A +    +  E+   +  L + M+E GY    T     + ++
Sbjct: 689 KLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGY-KPDTSCALHNEDE 747

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + + E +  HSERLA+AF LIS P+G  I +MKNLR C DCH   K+IS IV R+  VRD
Sbjct: 748 KFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRD 807

Query: 588 VNRFHHFRNGSCSCGDFW 605
             RFHHFR+G CSCGDFW
Sbjct: 808 STRFHHFRDGFCSCGDFW 825



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 5/388 (1%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +  V ++I+K G+ S     N L++ Y +  +  +A QLF EM E + VSY +++ GY  
Sbjct: 168 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSK 227

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G  + A+ LF +M  + + P EFTFA V+ A   L D++ G+QIH+ +    F +N+ V
Sbjct: 228 DGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFV 287

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L+D Y K + V  AR++FD M  ++ VS+  II  +A + +   A ++FRE  + + 
Sbjct: 288 SNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAF 347

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           DR  Q   A++++  ++      G+  H   + +  +   +V ++LVDMYAKCG    ++
Sbjct: 348 DR-KQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAE 406

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F  +++ S V +T+MI    + G     L LFN+M    +  +  TF  +L A +   
Sbjct: 407 MIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIA 466

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G Q L S   K G + +    + ++D+  + G + +A    ++ Q  PD   + W 
Sbjct: 467 SLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA---VQTFQEMPDRNIVSWN 522

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQ 433
            ++SA   +G  +  +++  +++ S  Q
Sbjct: 523 AMISAYAQNGEAEATLKSFKEMVLSGLQ 550



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 166/332 (50%), Gaps = 14/332 (4%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT + N +I+ YV+      AR+LFD M+E   V++T L+ GY  + Q + A  LF +M 
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 121 GNLVWPNEFTFATVIKACS--MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
                P+  TF T++  C+   + + IT  Q+ T I   G+   L+V ++LVD Y K N 
Sbjct: 142 RCGTEPDYVTFVTLLSGCNGHEMGNQIT--QVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 199

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +D A ++F  M   + VS+ ++I  ++++    +A+ +F E    S  +P +   A+V+ 
Sbjct: 200 LDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQ-NSGLKPTEFTFAAVLC 258

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           A   L  +V G+  H  V+++   +N  V++AL+D Y+K  SV  + K+F+ +     V+
Sbjct: 259 ANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVS 318

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           Y  +I G A  G  +++ DLF E+           F  +L   S++   + G Q      
Sbjct: 319 YNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ-----I 373

Query: 359 RKYGIIPDAKHYTCV----VDMLGRTGRLDEA 386
               I+  A     V    VDM  + G+ +EA
Sbjct: 374 HAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 405


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 337/589 (57%), Gaps = 35/589 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ +LK G          L++ Y R      AR+ FD+    ++  Y++L+A   +   
Sbjct: 23  VHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSD 82

Query: 109 PQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           P++ L L ++ML +  + P+ F  A++  A   L  L  G+Q+H H     +  + VV S
Sbjct: 83  PELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKS 142

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF------- 220
           SL+DMY KC     AR+VFD +G +N V WT++I  +A N    EAL++F+         
Sbjct: 143 SLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFT 202

Query: 221 ------------NYQS---------RDRPNQH---MLASVINACASLGRLVSGKVAHGVV 256
                       NY           RD    H   +LA+VI   A L  LV G+  HG V
Sbjct: 203 WTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFV 262

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +R G   + +V +ALVDMY+KC  ++ + +VF  I+   V+++T+++VG A++G      
Sbjct: 263 MRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVF 322

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            L+N M+  G+KPN+VTFVG+++ACSH+GLV +G Q  DSM R+YG+ P  +HYTC +D+
Sbjct: 323 ALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDL 382

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           L R+G L EA KL  ++  +PD     WG LLSA + H    + +  ++ L+E   +  +
Sbjct: 383 LSRSGYLSEAEKLITTMPYEPDEA--TWGALLSACKKHNDTQMCLRVADNLLELRPKDPS 440

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            Y+ LSN YA+  +W++V  +R  M    I K PG SWVE   ++  F+AG    + G E
Sbjct: 441 TYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEE 500

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +   L EL  +M++RGYV   T  V  D+E+  +E+ + +HSERLA+AFG++  P G  I
Sbjct: 501 ITCFLEELVSEMRKRGYV-PDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVI 559

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R++KNLR+C DCH V K IS I +R  +VRD +RFHHF +G+CSC +FW
Sbjct: 560 RVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/613 (38%), Positives = 346/613 (56%), Gaps = 47/613 (7%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL--KKTQVARQLFDEMLE 90
            I +L +C +L  +  +H  +L+ G   + + L  LI    +L       AR++ + +  
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N   +T+++ GY   G+   A+ ++  M    + P  FTF+ ++KAC  + DL  G+Q 
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 151 HTH---IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA-- 205
           H     +  F F Y   V ++++DMY KC  +D AR+VFD M  R+V+SWT +I A+A  
Sbjct: 172 HAQTFRLRGFCFVY---VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARV 228

Query: 206 -----------------------------QNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                                        QNA+  EALE F     +S  R ++  +A  
Sbjct: 229 GNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME-KSGIRADEVTVAGY 287

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRISNP 294
           I+ACA LG       A  +  +SG   +D  V+ SAL+DMY+KCG+V  +  VF  ++N 
Sbjct: 288 ISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK 347

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQH 353
           +V TY+SMI+G A +G  + +L LF+ M+++  IKPN VTFVG L ACSHSGLVD+G Q 
Sbjct: 348 NVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQV 407

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            DSMY+ +G+ P   HYTC+VD+LGRTGRL EA +L K++ V+P GG  +WG LL A R+
Sbjct: 408 FDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG--VWGALLGACRI 465

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           H   +IA  A+  L E    +   Y+ LSN YA AG+W  V  +R  +K  G+ K P  S
Sbjct: 466 HNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525

Query: 474 WVEIRD-QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           WV  ++ Q + F+ GN      +++   L EL  ++   GY    + + + DV D A+  
Sbjct: 526 WVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPY-DVSDNAKRL 584

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           I+  H+E+LALAF L++  +  TI IMKNLRMC DCH   +L S++  +  ++RD  RFH
Sbjct: 585 ILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFH 644

Query: 593 HFRNGSCSCGDFW 605
           HFR+G CSCGDFW
Sbjct: 645 HFRSGDCSCGDFW 657


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/582 (37%), Positives = 351/582 (60%), Gaps = 39/582 (6%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L +T T N +I+ +++  +  +A  LFD+M +P++VS+ S++ GY + G    AL  F  
Sbjct: 208 LKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSF 267

Query: 119 ML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI----------------------- 154
           ML  + + P++FT  +V+ AC+    L  GKQIH HI                       
Sbjct: 268 MLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327

Query: 155 ---------ETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
                    E  G    N++  +SL+D Y K  D+D AR +FD +  R+VV+WT++IV +
Sbjct: 328 AVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGY 387

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           AQN    +AL +FR    +   +PN + LA+V++  +SL  L  GK  H V +R     +
Sbjct: 388 AQNGLISDALVLFR-LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSS 446

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V +AL+ MY++ GS+  + K+FN I S    +T+TSMI+  A++GLG  +++LF +M+
Sbjct: 447 VSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKML 506

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
              +KP+ +T+VGVL AC+H GLV++G  + + M   + I P + HY C++D+LGR G L
Sbjct: 507 RINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLL 566

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           +EAY   +++ ++PD   + WG+LLS+ R+H  VD+A  A+ +L+  +   + AY+ L+N
Sbjct: 567 EEAYNFIRNMPIEPD--VVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALAN 624

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
           T +  G+WE+   +R  MK   + KE G SWV+I+++ + F   +AL  +   +  ++ +
Sbjct: 625 TLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISK 684

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           + +++K+ G++   T  V  D+E E +E+I+  HSE+LA+AF LI+ PK  T+RIMKNLR
Sbjct: 685 IWKEIKKMGFIP-DTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLR 743

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   + IS +VER+ +VRD  RFHHF++GSCSC D+W
Sbjct: 744 VCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 199/437 (45%), Gaps = 67/437 (15%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L  TF+ N +++ + +      AR++FDE+ +P+ VS+T+++ GY ++G  + A+  F +
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M+ + + P +FTF  V+ +C+    L  GK++H+ +   G    + V +SL++MY KC D
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 179 VDGARRVFDLMGCR-------------------------------NVVSWTSIIVAHAQN 207
              A+ VFD M  +                               ++VSW SII  +   
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
                ALE F      S  +P++  L SV++ACA+   L  GK  H  +VR+  +    V
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAV 315

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPS-------------------------------- 295
            +AL+ MYAK G+V  + ++      PS                                
Sbjct: 316 GNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR 375

Query: 296 -VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
            VV +T+MIVG A+ GL   +L LF  MI  G KPN+ T   VL   S    +D G Q L
Sbjct: 376 DVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQ-L 434

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            ++  +   +        ++ M  R+G + +A K+   I    D   L W +++ +   H
Sbjct: 435 HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRD--TLTWTSMILSLAQH 492

Query: 415 GRVDIAVEASNQLIESN 431
           G  + A+E   +++  N
Sbjct: 493 GLGNEAIELFEKMLRIN 509



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + ++  +AK G+++ + +VF+ I  P  V++T+MIVG    GL + ++  F  M+S GI 
Sbjct: 83  NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGIS 142

Query: 329 PNDVTFVGVLHACSHSGLVDEG--IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           P   TF  VL +C+ +  +D G  +        + G++P A     +++M  + G    A
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVA---NSLLNMYAKCGDSVMA 199

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
             +   +++        W T++S      + D+A+   +Q+ + +    N+ +T
Sbjct: 200 KVVFDRMRLKDTST---WNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIIT 250


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 341/585 (58%), Gaps = 11/585 (1%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T+  F   +  C    SL+    VH  ++ SGF  + F    LIN Y  L     A ++F
Sbjct: 77  TQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVF 136

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM----L 141
           DE  E  +  + +L      +G  +  L L+ +M       + FT+  V+KAC +    +
Sbjct: 137 DETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSV 196

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
             L  GK+IH HI   G++ N+ V ++L+D+Y K   V  A  VF  M  +N VSW+++I
Sbjct: 197 CPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMI 256

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
              A+N    +ALE+F+   +++ +  PN   + +++ ACA L  L  GK+ HG ++R  
Sbjct: 257 ACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQ 316

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            +    V +AL+ MY +CG V    +VF+ +    VV++ S+I     +G G+ ++ +F 
Sbjct: 317 LDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFE 376

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            MI +G+ P+ ++F+ VL ACSH+GLV+EG    +SM  KY I P  +HY C+VD+LGR 
Sbjct: 377 NMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRA 436

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
            RL EA KL + +  +P  GP +WG+LL + R+H  V++A  AS  L E   + A  YV 
Sbjct: 437 NRLGEAIKLIEDMHFEP--GPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVL 494

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           L++ YA A  W    S+   ++  G+ K PGCSW+E++ + Y+F + +    +  E+ +L
Sbjct: 495 LADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHAL 554

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L +L  +MK +GYV  +T +V  D+++E +E IV  HSE+LA+AFGLI+  KG TIRI K
Sbjct: 555 LVKLSNEMKAQGYV-PQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRK 613

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH V K IS    R+ +VRDVNRFHHFR+G CSCGD+W
Sbjct: 614 NLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 159/324 (49%), Gaps = 17/324 (5%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P + TF  +I +C+    L  G  +H  +   GF  +  + + L++MY +   +D A +V
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA---- 241
           FD    R +  W ++  A A    G E L+++ + N+      ++     V+ AC     
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPS-DRFTYTYVLKACVVSEL 194

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           S+  L  GK  H  ++R G E N  V + L+D+YAK GSV+Y++ VF  +   + V++++
Sbjct: 195 SVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIK--PNDVTFVGVLHACSHSGLVDEG-IQHLDSMY 358
           MI   AK  +   +L+LF  M+       PN VT V +L AC+    +++G + H   + 
Sbjct: 255 MIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILR 314

Query: 359 RKY-GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
           R+   I+P       ++ M GR G +    ++  +++       + W +L+S   +HG  
Sbjct: 315 RQLDSILPV---LNALITMYGRCGEVLMGQRVFDNMK---KRDVVSWNSLISIYGMHGFG 368

Query: 418 DIAVEASNQLIESNQQVANAYVTL 441
             A++    +I  +Q V+ +Y++ 
Sbjct: 369 KKAIQIFENMI--HQGVSPSYISF 390


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/547 (38%), Positives = 324/547 (59%), Gaps = 16/547 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I+ Y +      AR+LFDE    +V ++T++++GY+  G    A   F +M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCND 178
                 NE ++       +M+A  +  K++    E F      N+   ++++  YG+  D
Sbjct: 294 EK----NEVSYN------AMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGD 343

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  AR+ FD+M  R+ VSW +II  +AQ+    EAL MF E   Q  +  N+      ++
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK-QDGESLNRATFGCALS 402

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +  L  GK  HG  V+ G      V +AL+ MY KCGS++ ++  F  I    VV+
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +M+ G A++G GR +L +F  M + G+KP+++T VGVL ACSH+GL+D G ++  SM 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG+IP +KHYTC++D+LGR GRL+EA  L +++   P  G   WG LL ASR+HG  +
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP--GAASWGALLGASRIHGNTE 580

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +  +A+  + +   Q +  YV LSN YA +G W +   +RS+M+  G+ K PG SWVE++
Sbjct: 581 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQ 640

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F  G+        + + L EL+ KM+E GYV   T LV  DVE+E +E ++  HS
Sbjct: 641 NKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYV-SLTKLVLHDVEEEEKEHMLKYHS 699

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFG+++IP G  IR+MKNLR+C DCH   K IS IV R  ++RD +RFHHF  G 
Sbjct: 700 EKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGF 759

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 760 CSCGDYW 766



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 60/264 (22%)

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           ++GL+D G ++   M  +Y + P +KHYTC++D+LGR  RL+E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
             G LL ASR+HG  ++  +A+    +   Q                     +S  S+M+
Sbjct: 819 --GALLGASRIHGNTELGEKAAQMFFKMGPQ---------------------NSGISKMR 855

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             G+ K PG SW E++++ + F  G     R  E +  L EL+ KM+ER     +T L +
Sbjct: 856 DVGVQKVPGYSWFEVQNKIHTFSVG-LFLSRERENIGFLEELDLKMREREEEKERT-LKY 913

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN-LRMCRDCHDVFKLISDIVER 581
           +              SE LA A G+++IP G   R+MK  + +C DC    K +S IV R
Sbjct: 914 L--------------SENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGR 959

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
              +RD    H F    CSCG++W
Sbjct: 960 LITLRDS---HRFNESICSCGEYW 980



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 130/262 (49%), Gaps = 4/262 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +  E+ +S    N  + N +I  Y ++     AR+ FD M + + VS+ +++AGY   G 
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH 374

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F ++  +    N  TF   +  C+ +A L  GKQIH      G+     V ++
Sbjct: 375 YEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNA 434

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC  +D A   F+ +  ++VVSW +++  +A++  G +AL +F      +  +P
Sbjct: 435 LLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK-TAGVKP 493

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS-DK 286
           ++  +  V++AC+  G L  G +  + +    G        + ++D+  + G +  + D 
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 287 VFNRISNPSVVTYTSMIVGAAK 308
           + N    P   ++ +++ GA++
Sbjct: 554 IRNMPFQPGAASWGALL-GASR 574



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 184/458 (40%), Gaps = 62/458 (13%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISLASVHSEILKSGFLSN 61
           +S+T N    +    + + NK  S H +  H    L     +   +SV    + SG+L N
Sbjct: 34  ESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN 93

Query: 62  T-----------------FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           +                 F+ N ++  YVR  +   AR+LFD M E +VVS+ SL++GY 
Sbjct: 94  SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 105 NMGQPQIALLLFQKML--GNLVWPNEFTF----ATVIKACSMLADLITGKQIHTHIETFG 158
             G    A  +F  M    ++ W            + +AC +         I  +    G
Sbjct: 154 QNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG 213

Query: 159 F-----------------QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           F                   + +  ++++  Y +   +  ARR+FD    R+V +WT+++
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
             + QN    EA   F E   ++    N  +   V      + R    ++   +  R+  
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR----ELFESMPCRNIS 329

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
            +N ++       Y + G +  + K F+ +     V++ ++I G A+ G    +L++F E
Sbjct: 330 SWNTMITG-----YGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG---IIPDAKHYTCVVDML 377
           +   G   N  TF   L  C+    ++ G Q H  ++   YG    + +A     ++ M 
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNA-----LLAMY 439

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            + G +DEA    + I+   +   + W T+L+    HG
Sbjct: 440 FKCGSIDEANDTFEGIE---EKDVVSWNTMLAGYARHG 474



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/401 (20%), Positives = 172/401 (42%), Gaps = 65/401 (16%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N  I+ ++R      A  +F+ M   + VSY ++++GY+   +  +A  LF +M      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------ 106

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P                DL              F +N+++       Y +   +  ARR+
Sbjct: 107 PER--------------DL--------------FSWNVMLTG-----YVRNCRLGDARRL 133

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FDLM  ++VVSW S++  +AQN    EA E+F     ++    N  + A V N       
Sbjct: 134 FDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN------- 186

Query: 246 LVSGKVAHG-VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
              G++    ++  S  +++ +  + L+  + +   +  +  +F+++     +++ +MI 
Sbjct: 187 ---GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMIS 243

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A+ G    +  LF+E  +R +     T+  ++     +G++DE     D M  K  + 
Sbjct: 244 GYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV- 298

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
                Y  ++    +T ++D A +L +S+   P      W T+++    +G++    +A 
Sbjct: 299 ----SYNAMIAGYVQTKKMDIARELFESM---PCRNISSWNTMITG---YGQIGDIAQAR 348

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
                  Q+   ++  +   YA +G +E   ++  E+K+ G
Sbjct: 349 KFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 13/226 (5%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           +A F   L  C  + +L     +H + +K G+ +  F  N L+  Y +      A   F+
Sbjct: 394 RATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFE 453

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            + E +VVS+ +++AGY   G  + AL +F+ M    V P+E T   V+ ACS    L  
Sbjct: 454 GIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDR 513

Query: 147 GKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA- 203
           G +  ++  + +G        + ++D+ G+   ++ A+ +   M  +    SW +++ A 
Sbjct: 514 GTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGAS 573

Query: 204 --HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
             H     G +A EM  +   Q     N  M   + N  A+ GR V
Sbjct: 574 RIHGNTELGEKAAEMVFKMEPQ-----NSGMYVLLSNLYAASGRWV 614


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 325/568 (57%), Gaps = 9/568 (1%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           +C  L+    V  E++     S     N +I+ YV+    + AR LFD+M   +  S+T+
Sbjct: 165 KCGSLVDAEKVFDEMVHRDLCS----WNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTA 220

Query: 99  LMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           +++G +   +P+ AL L++ M   +    N+ T ++ + A + +  L  GK+IH HI   
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G   + VV  SL+DMYGKC  ++ AR +FD M  R+VVSWT++I  + +N +  E   +F
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF 340

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           R     S   PN    A V+NACA L     GK  H  +VR G +     ASALV MY+K
Sbjct: 341 RHL-MNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSK 399

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG +  +  VF  +  P + ++TS++VG A++G    +L  F  ++  G KP+ + F+GV
Sbjct: 400 CGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGV 459

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L AC+H+GLVD+G+++  S+  K+G+     HY C++D+L R G+  EA  +   + + P
Sbjct: 460 LSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKP 519

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           D    +W  LL   R+HG +++A  A+  L E   +    YVTL+N YA AG      ++
Sbjct: 520 D--KYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANI 577

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R  M   GI K+PG SW+EIR + + F  G+    +  E+L  L EL ++MKE GYV   
Sbjct: 578 RETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYV-PD 636

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           T  V  DVE E +EE +  HSE+LA+AFG+IS P G  I++ KNLR C DCH+  K IS+
Sbjct: 637 TNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISN 696

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I  R  +VRD NRFH F  GSCSC D+W
Sbjct: 697 ITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 108/246 (43%), Gaps = 17/246 (6%)

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           ++P   +  +++  C     L  GK  H  +  SG      +++ L+DMYAKCGS+  ++
Sbjct: 115 EKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAE 173

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ + +  + ++  MI G  K G    + +LF++M +R    ++ ++  ++  C    
Sbjct: 174 KVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHN 229

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-----QVDPDGG 400
             +E ++    +YR       +K   C +           +  + K I     ++  D  
Sbjct: 230 RPEEALE----LYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSD 285

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            ++W +LL    ++G+     EA     +  ++   ++ T+ +TY   G  E   +L   
Sbjct: 286 EVVWCSLLD---MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342

Query: 461 MKRTGI 466
           +  + I
Sbjct: 343 LMNSNI 348


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 329/558 (58%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K+ F+ N F  N L++ Y +      AR+LFDEM E + VSY  +++GY   G+
Sbjct: 232 IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 291

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  LF+++        +F FAT++   S   D   G+QIH           ++V +S
Sbjct: 292 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 351

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC   + A  +F  +  R+ V WT++I A+ Q     E L++F +   Q+    
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR-QASVIA 410

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   AS++ A AS+  L  GK  H  +++SG   N    SAL+D+YAKCGS+  + + F
Sbjct: 411 DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 470

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + + ++V++ +MI   A+ G    +L  F EM+  G++P+ V+F+GVL ACSHSGLV+
Sbjct: 471 QEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVE 530

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ H +SM + Y + P  +HY  VVDML R+GR +EA KL   + +DPD   ++W ++L
Sbjct: 531 EGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPD--EIMWSSVL 588

Query: 409 SASRLHGRVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           +A R+H   ++A  A++QL    + + A  YV +SN YA AG+WENV  +   M+  G+ 
Sbjct: 589 NACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVK 648

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K P  SWVEI+ +T+ F A +    +  E+   +  L + M+E GY    T     + ++
Sbjct: 649 KLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGY-KPDTSCALHNEDE 707

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + + E +  HSERLA+AF LIS P+G  I +MKNLR C DCH   K+IS IV R+  VRD
Sbjct: 708 KFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRD 767

Query: 588 VNRFHHFRNGSCSCGDFW 605
             RFHHFR+G CSCGDFW
Sbjct: 768 STRFHHFRDGFCSCGDFW 785



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 186/388 (47%), Gaps = 40/388 (10%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +  V ++I+K G+ S     N L++ Y +  +  +A QLF EM                 
Sbjct: 163 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM----------------- 205

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
              P+I               + FTFA V+ A   L D++ G+QIH+ +    F +N+ V
Sbjct: 206 ---PEI---------------DSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFV 247

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L+D Y K + V  AR++FD M  ++ VS+  II  +A + +   A ++FRE  + + 
Sbjct: 248 SNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAF 307

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           DR  Q   A++++  ++      G+  H   + +  +   +V ++LVDMYAKCG    ++
Sbjct: 308 DR-KQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAE 366

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F  +++ S V +T+MI    + G     L LFN+M    +  +  TF  +L A +   
Sbjct: 367 MIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIA 426

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G Q L S   K G + +    + ++D+  + G + +A    ++ Q  PD   + W 
Sbjct: 427 SLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA---VQTFQEMPDRNIVSWN 482

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQ 433
            ++SA   +G  +  +++  +++ S  Q
Sbjct: 483 AMISAYAQNGEAEATLKSFKEMVLSGLQ 510



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 149/332 (44%), Gaps = 49/332 (14%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT + N +I+ YV+      AR+LFD M+E   V++T L+ GY  + Q + A  LF +M 
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 121 GNLVWPNEFTFATVIKACS--MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
                P+  TF T++  C+   + + IT  Q+ T I   G+   L+V ++LVD Y K N 
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQIT--QVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +D A ++F  M    + S+T                                   A+V+ 
Sbjct: 195 LDLACQLFKEMP--EIDSFT----------------------------------FAAVLC 218

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           A   L  +V G+  H  V+++   +N  V++AL+D Y+K  SV  + K+F+ +     V+
Sbjct: 219 ANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVS 278

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           Y  +I G A  G  +++ DLF E+           F  +L   S++   + G Q      
Sbjct: 279 YNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ-----I 333

Query: 359 RKYGIIPDAKHYTCV----VDMLGRTGRLDEA 386
               I+  A     V    VDM  + G+ +EA
Sbjct: 334 HAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 365



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 152/360 (42%), Gaps = 49/360 (13%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N V  + ++  Y K  ++  AR++FD M  R  V+WT +I  ++Q  Q  EA E+F +  
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 222 YQSRDRPNQHMLASVINACA--SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
            +    P+     ++++ C    +G  ++       +++ G +   +V + LVD Y K  
Sbjct: 137 -RCGTEPDYVTFVTLLSGCNGHEMGNQITQ--VQTQIIKLGYDSRLIVGNTLVDSYCKSN 193

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            ++ + ++F  +  P + ++T   V  A  GL    L    ++ S  IK N V  V V +
Sbjct: 194 RLDLACQLFKEM--PEIDSFTFAAVLCANIGLDDIVLG--QQIHSFVIKTNFVWNVFVSN 249

Query: 340 A-----CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           A       H  ++D   +  D M  + G+      Y  ++      G+   A+ L + +Q
Sbjct: 250 ALLDFYSKHDSVID-ARKLFDEMPEQDGV-----SYNVIISGYAWDGKHKYAFDLFRELQ 303

Query: 395 VDP-DGGPLLWGTLLSAS----------RLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
               D     + T+LS +          ++H +  I   A ++++  N        +L +
Sbjct: 304 FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT-IVTTADSEILVGN--------SLVD 354

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA  G++E      +EM  T +       W  +     + Y     +E G ++ + +R+
Sbjct: 355 MYAKCGKFE-----EAEMIFTNLTHRSAVPWTAM----ISAYVQKGFYEEGLQLFNKMRQ 405


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/637 (34%), Positives = 355/637 (55%), Gaps = 67/637 (10%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H ++   + K L     +H   LK+   +++  L+ L   Y+   +  +AR+LFDE+  P
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +V+ +  ++  Y   G    A+ L+  ML   V PN++T+  V+KACS L  +  G +IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 152 THIETFGFQYNLVVCSSLVD----------------------------------MYGKCN 177
           +H + FG + ++ VC++LVD                                  +YG C+
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 178 DV---------DG--------------------ARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           D          +G                    AR++FD+MG RN VSW+++I  +  + 
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 252

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL++FR       D P+   +  V+ AC+ L  L  G  +HG ++  G   + ++ 
Sbjct: 253 CMKEALDIFRMMQLSGID-PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC 311

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +AL+DMY+KCG ++++ +VFNR+    +V++ +MI+G   +GLG  +L LF+++++ G+K
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+D+TF+ +L +CSHSGLV EG    D+M R + I+P  +H  C+VD+LGR G +DEA+ 
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 431

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             +++  +PD    +W  LLSA R+H  +++  E S ++     +    +V LSN Y+ A
Sbjct: 432 FIRNMPFEPD--VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAA 489

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W++   +R   K  G+ K PGCSW+EI    +AF  G+    + S++   L EL  +M
Sbjct: 490 GRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEM 549

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  GY   +   VF DVE+E +E+I+  HSE+LA+AFG++++  G  I + KNLR+C DC
Sbjct: 550 KRLGY-QAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDC 608

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K ++ I +R+  VRD NRFHHF+NG+C+CGDFW
Sbjct: 609 HTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/559 (39%), Positives = 318/559 (56%), Gaps = 4/559 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++HS  +K G  S  F  N LI+ Y    + +  +++FD M   +++S+ S++  Y    
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG-FQYNLVVC 166
           QP  A+ LFQ+M  + + P+  T  ++    S L D+   + +       G F  ++ + 
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG 387

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +++V MY K   VD AR VF+ +   +V+SW +II  +AQN    EA+EM+     +   
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEI 447

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             NQ    SV+ AC+  G L  G   HG ++++G   +  V ++L DMY KCG +  +  
Sbjct: 448 AANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALS 507

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F +I   + V + ++I     +G G  ++ LF EM+  G+KP+ +TFV +L ACSHSGL
Sbjct: 508 LFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 567

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG    + M   YGI P  KHY C+VDM GR G+L+ A K  KS+ + PD    +WG 
Sbjct: 568 VDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDAS--IWGA 625

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LLSA R+HG VD+   AS  L E   +    +V LSN YA AG+WE V  +RS     G+
Sbjct: 626 LLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG S +E+ ++   FY GN       E+   L  L+ K+K  GYV      V  DVE
Sbjct: 686 RKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR-FVLQDVE 744

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D+ +E I+  HSERLA+AF LI+ P   TIRI KNLR+C DCH V K IS I ER+ +VR
Sbjct: 745 DDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVR 804

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF+NG CSCGD+W
Sbjct: 805 DSNRFHHFKNGVCSCGDYW 823



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 11/399 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C+ +I    +H   LK GF+ + +    LI+ Y R K    AR LFDEM   +
Sbjct: 156 FPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRD 215

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + S+ ++++GY   G  + AL L   +       +  T  +++ AC+   D   G  IH+
Sbjct: 216 MGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHS 271

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           +    G +  L V + L+D+Y +   +   ++VFD M  R+++SW SII A+  N Q   
Sbjct: 272 YSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLR 331

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASAL 271
           A+ +F+E    SR +P+   L S+ +  + LG + + +   G  +R G    D+ + +A+
Sbjct: 332 AISLFQEMRL-SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPN 330
           V MYAK G V+ +  VFN + N  V+++ ++I G A+ G    +++++N M   G I  N
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAAN 450

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V VL ACS +G + +G++ L     K G+  D    T + DM G+ GRL++A  L 
Sbjct: 451 QGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             I   P    + W TL++    HG  + AV    ++++
Sbjct: 510 YQI---PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 545



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 194/431 (45%), Gaps = 14/431 (3%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL 99
           C +L S   +H+ ++ S  + N      L+N Y  L    +AR  FD +   +V ++  +
Sbjct: 64  CTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLM 123

Query: 100 MAGYINMGQPQIALLLFQK-MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++GY   G     +  F   ML + + P+  TF +V+KAC  + D   G +IH     FG
Sbjct: 124 ISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFG 180

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F +++ V +SL+ +Y +   V  AR +FD M  R++ SW ++I  + Q+    EAL +  
Sbjct: 181 FMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN 240

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
                     +   + S+++AC   G    G   H   ++ G E    V++ L+D+YA+ 
Sbjct: 241 GLRAM-----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEF 295

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +    KVF+R+    ++++ S+I           ++ LF EM    I+P+ +T + + 
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLA 355

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
              S  G +           RK   + D      VV M  + G +D A  +   +   P+
Sbjct: 356 SILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL---PN 412

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAGEWENVHS 456
              + W T++S    +G    A+E  N + E  +  AN   +V++    + AG       
Sbjct: 413 TDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK 472

Query: 457 LRSEMKRTGIH 467
           L   + + G++
Sbjct: 473 LHGRLLKNGLY 483



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 136/288 (47%), Gaps = 24/288 (8%)

Query: 129 FTFATVIKACSML-ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           F + T +++   L A L+  KQI           N+ + + LV++Y    +V  AR  FD
Sbjct: 61  FRYCTNLQSAKCLHARLVVSKQIQ----------NVCISAKLVNLYCYLGNVALARHTFD 110

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  R+V +W  +I  + +     E +  F  F   S   P+     SV+ AC +   ++
Sbjct: 111 HIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT---VI 167

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G   H + ++ G  ++  VA++L+ +Y++  +V  +  +F+ +    + ++ +MI G  
Sbjct: 168 DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 227

Query: 308 KYGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           + G  + +L L     S G++  D VT V +L AC+ +G  + G+  + S   K+G+  +
Sbjct: 228 QSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESE 281

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
                 ++D+    GRL +  K+   + V      + W +++ A  L+
Sbjct: 282 LFVSNKLIDLYAEFGRLRDCQKVFDRMYVRD---LISWNSIIKAYELN 326


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/594 (36%), Positives = 351/594 (59%), Gaps = 8/594 (1%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           A + T+ +K  + +T+ + I  + +C  L  L  + +  +KS     +F    +  C   
Sbjct: 15  AETFTKHSKIDTVNTQ-NPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTES 73

Query: 75  LKKTQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
             ++ +  AR LF+ M EP++V + S+  GY     P     LF ++L + + P+ +TF 
Sbjct: 74  PTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFP 133

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++KAC++   L  G+Q+H      G   N+ VC +L++MY +C DVD AR VFD +   
Sbjct: 134 SLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEP 193

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            VV + ++I  +A+  + +EAL +FRE   +   +PN+  L SV+++CA LG L  GK  
Sbjct: 194 CVVCYNAMITGYARRNRPNEALSLFREMQGKYL-KPNEITLLSVLSSCALLGSLDLGKWI 252

Query: 253 HGVVVR-SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
           H    + S C++  V  +AL+DM+AKCGS++ +  +F ++       +++MIV  A +G 
Sbjct: 253 HKYAKKHSFCKYVKV-NTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
              S+ +F  M S  ++P+++TF+G+L+ACSH+G V+EG ++   M  K+GI+P  KHY 
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            +VD+L R G L++AY+    + + P   P+LW  LL+A   H  +D+A + S ++ E +
Sbjct: 372 SMVDLLSRAGNLEDAYEFIDKLPISP--TPMLWRILLAACSSHNNLDLAEKVSERIFELD 429

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
                 YV LSN YA   +WE V SLR  MK     K PGCS +E+ +  + F++G+ + 
Sbjct: 430 DSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVK 489

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
              +++   L E+ +++K  GYV   + +V  ++ D+ +E  +  HSE+LA+ FGL++ P
Sbjct: 490 SATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTP 549

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            G TIR++KNLR+CRDCH+  KLIS I  R  V+RDV RFHHF +G CSCGDFW
Sbjct: 550 PGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 355/612 (58%), Gaps = 42/612 (6%)

Query: 32  HFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           H++ QLQ C   + L +  ++H+ I+K G +      N L+N Y +      A Q+FDEM
Sbjct: 5   HYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEM 64

Query: 89  LEPNVVSYTSLMAGY--INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
              + +++ S++      N+    +++         L  P++F F+ ++KAC+ L  +  
Sbjct: 65  PHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR-PDDFVFSALVKACANLGSIDH 123

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G+Q+H H     +  + VV SSLVDMY KC  ++ A+ VFD +  +N +SWT+++  +A+
Sbjct: 124 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 183

Query: 207 NAQGHEALEMFR-------------------------------EFNYQSRDRPNQHMLAS 235
           + +  EALE+FR                               E   +  D  +  +L+S
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 243

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           ++ ACA+L   ++G+  HG+V+  G +    +++AL+DMYAKC  V  +  +F+R+ +  
Sbjct: 244 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 303

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           VV++TS+IVG A++G    +L L+++M+S G+KPN+VTFVG+++ACSH G V++G +   
Sbjct: 304 VVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQ 363

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           SM + YGI P  +HYTC++D+LGR+G LDEA  L  ++   PD     W  LLSA +  G
Sbjct: 364 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPT--WAALLSACKRQG 421

Query: 416 RVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           R  + +  ++ L+ S + +  + Y+ LSN YA A  W  V   R ++    + K+PG S 
Sbjct: 422 RGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSS 481

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER-GYVGGKTGLVFVDVEDEAREEI 533
           VE+R +T  FYAG        ++  LL++LE +M+ R GYV   T  +  D++++ +E++
Sbjct: 482 VEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYV-PDTSWILHDMDEQEKEKL 540

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           +  HSER A+A+GL+    G  IRI+KNLR+C DCH V K IS+I ER+ +VRD  R+HH
Sbjct: 541 LFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600

Query: 594 FRNGSCSCGDFW 605
           F+ G CSC DFW
Sbjct: 601 FKGGKCSCNDFW 612


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 341/582 (58%), Gaps = 21/582 (3%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT---------------QVARQLF 85
           KH     S+H+  ++ G  S+ +  N LIN Y +                      +++F
Sbjct: 124 KHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVF 183

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADL 144
           D M   +VVS+ +++AG+   G    AL + ++M  N  + P+ FT ++++   +   D+
Sbjct: 184 DMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDV 243

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
             GK+IH +    GF  ++ + SSL+DMY KCN ++ + R F ++  ++ +SW SII   
Sbjct: 244 NKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGC 303

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN +    L  FR    +   +P     +SVI ACA L  L  G+  HG +VR G + N
Sbjct: 304 VQNGEFDRGLGFFRRM-LKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDN 362

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
           + +AS+LVDMYAKCG++  +  VF+RI    +V +T++I+G A +G    ++ LF  M+ 
Sbjct: 363 EFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLE 422

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G++P  V F+ VL ACSH+GLVDEG ++ +SM R +GI P  +HY  V D+LGR GRL+
Sbjct: 423 DGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLE 482

Query: 385 EAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           EAY    +++ V P G   +W  LL+A R H  V++A +  ++L+  + +   AYV +SN
Sbjct: 483 EAYDFISNMRGVQPTGS--VWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSN 540

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            Y+ A  W++   LR  M++ G+ K P CSW+E+ +Q + F AG+       ++   L  
Sbjct: 541 IYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDV 600

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           L  +M++ GYV   T  V  DV++E + E++  HSERLA+A+G+IS   G TIR++KN+R
Sbjct: 601 LLEQMEKEGYV-IDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIR 659

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   K I+ IV R+  VRD +RFHHF+NGSCSCGD+W
Sbjct: 660 VCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 21/351 (5%)

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           +++S++  Y +     ++   F  M    V PN   F +++KA ++L        +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 155 ETFGFQYNLVVCSSLVDMYGKCND---------------VDGARRVFDLMGCRNVVSWTS 199
              G   +L + ++L++ Y K ++               +D  ++VFD+M  R+VVSW +
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +I   AQN    EAL+M RE     + +P+   L+S++   A    +  GK  HG  VR+
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G + +  + S+L+DMYAKC  +  S + F  +     +++ S+I G  + G     L  F
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
             M+   +KP  V+F  V+ AC+H   +  G Q L     + G   +    + +VDM  +
Sbjct: 317 RRMLKENVKPMAVSFSSVIPACAHLTALSLGRQ-LHGCIVRLGFDDNEFIASSLVDMYAK 375

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLL-WGTLLSASRLHGRVDIAVEASNQLIE 429
            G +    K+A+ +    D   ++ W  ++    +HG    AV     ++E
Sbjct: 376 CGNI----KMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLE 422


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/608 (36%), Positives = 346/608 (56%), Gaps = 33/608 (5%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T    I+   E + L +  + H  ++K    S+ F LN LI+ Y +  +  +  ++F  +
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              +VVS+ S++  ++  G P+ AL LFQ+M    V PN  T   V+ AC+  +D   G+
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ-- 206
            +H++IE      +L + ++++DMY KC  V+ A+R+FD M  +++VSWT+++V +A+  
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 207 ---NAQG--------------------------HEALEMFREFNYQSRDRPNQHMLASVI 237
               AQG                           EALE+F E       +P++  L S +
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           +ACA LG +  G   H  + + G + N  + ++L+DMY KCG +  +  VF+ +    V 
Sbjct: 378 SACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVF 437

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            +++MI G A +G G+ ++ LF++M    +KPN VTF  +L ACSH GLV+EG    + M
Sbjct: 438 VWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
              YG++P  KHY C+VD+LGR G L+EA +L + + + P     +WG LL A  +H  V
Sbjct: 498 ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAAS--VWGALLGACTIHENV 555

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
            +A +A +QLIE       AYV LSN YA AG+W+ V  LR  M+  G+ KEPGCS +E+
Sbjct: 556 VLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 615

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
               + F  G+       ++ + L E+  +++  GYV  K+ L+ +  E++ +E+ + LH
Sbjct: 616 DGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLH 675

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AFGLIS  +   IRI+KNLR+C DCH V KL+S + +R+ ++RD  RFHHFR G
Sbjct: 676 SEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREG 735

Query: 598 SCSCGDFW 605
            CSC D+W
Sbjct: 736 HCSCMDYW 743



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 232/468 (49%), Gaps = 46/468 (9%)

Query: 12  TLAASSLTRQNKRS-SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           T   +S+T  N R  + H     I Q  E K L     +H+++L++G   + F+ + LI 
Sbjct: 19  TPNPNSITLNNDRYFANHPTLSLIDQCSETKQL---KQIHAQMLRTGLFFDPFSASRLIT 75

Query: 71  CYV--RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPN 127
                       A+Q+FD++  PN+ ++ +L+  Y +   P  +LL+F +ML     +P+
Sbjct: 76  AAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPD 135

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           +FTF  +IKA S L +L TGK  H  +       ++ + +SL+  Y KC ++    RVF 
Sbjct: 136 KFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFV 195

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  R+VVSW S+I A  Q     EALE+F+E   Q+  +PN   +  V++ACA      
Sbjct: 196 NIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKSDFE 254

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G+  H  + R+    +  +++A++DMY KCGSV  + ++F+++    +V++T+M+VG A
Sbjct: 255 FGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 308 KYG-----LGRF--------------------------SLDLFNEM-ISRGIKPNDVTFV 335
           K G      G F                          +L+LF+E+ +S+  KP++VT V
Sbjct: 315 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
             L AC+  G +D G   +    +K G+  +    T ++DM  + G L +A  +  S++ 
Sbjct: 375 STLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVE- 432

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
                  +W  +++   +HG    A+   +++ E   +V    VT +N
Sbjct: 433 --RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQED--KVKPNAVTFTN 476



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 163/338 (48%), Gaps = 12/338 (3%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM--YGKCNDVDGARRVFDLMG 190
           ++I  CS    L   KQIH  +   G  ++    S L+          +D A++VFD + 
Sbjct: 40  SLIDQCSETKQL---KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
             N+ +W ++I A+A ++  H++L +F    +QS D P++     +I A + L  L +GK
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG+V++     +  + ++L+  YAKCG +    +VF  I    VV++ SMI    + G
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
               +L+LF EM ++ +KPN +T VGVL AC+     + G + + S   +  I       
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLS 275

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
             ++DM  + G +++A +L   +   P+   + W T+L      G  D A    + +   
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKM---PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM--P 330

Query: 431 NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           NQ +A A+  L + Y   G+ +    L  E++ +   K
Sbjct: 331 NQDIA-AWNALISAYEQCGKPKEALELFHELQLSKTAK 367


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/549 (38%), Positives = 332/549 (60%), Gaps = 11/549 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPN 92
           L+EC  L  +     VH+ ++ S FL N   L N ++N Y +      AR++FDEM   +
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V++T+L+AG+    +P+ ALLLF +ML   + PN FT ++++KA      L  G Q+H 
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHA 213

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
               +G+Q ++ V S+LVDMY +C  +D A+  FD M  ++ VSW ++I  HA+  +G  
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEH 273

Query: 213 ALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL +   +  Q ++ +P     +SV +ACAS+G L  GK  H  +++SG +    + + L
Sbjct: 274 ALHLL--WKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTL 331

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAK GS++ + +VF+R+  P VV++ +M+ G A++GLG+ +LD F +M+  GI+PN+
Sbjct: 332 LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNE 391

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           ++F+ VL ACSHSGL+DEG+ + + M +KY + PD  HY   VD+LGR G LD A +  +
Sbjct: 392 ISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIR 450

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + ++P     +WG LL A R+H  +++ V A+ +  E +   +   + LSN YA AG W
Sbjct: 451 EMPIEPTAA--VWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRW 508

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
            +V  +R  MK +G+ K+P CSWVEI +  + F A +    +  E+     E+  K+KE 
Sbjct: 509 RDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEI 568

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V + V+ + REE +  HSE+LALAF L++ P G  IRI KN+R+C DCH  
Sbjct: 569 GYV-PDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAA 627

Query: 572 FKLISDIVE 580
            K +S I E
Sbjct: 628 IKFVSKIYE 636



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 167/305 (54%), Gaps = 9/305 (2%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-LVVCSSLV 170
           AL L Q+  G+LV P+   ++ ++K C+ L  +  G+ +H H+    F  N LV+ + +V
Sbjct: 74  ALDLIQR--GSLV-PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           +MY KC  +D ARR+FD M  +++V+WT++I   +QN +  +AL +F +   +   +PN 
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM-LRLGLQPNH 189

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             L+S++ A  S   L  G   H   ++ G + +  V SALVDMYA+CG ++ +   F+ 
Sbjct: 190 FTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   S V++ ++I G A+ G G  +L L  +M  +  +P   T+  V  AC+  G +++G
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG 309

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            + + +   K G+   A     ++DM  + G +D+A ++   + V PD   + W T+L+ 
Sbjct: 310 -KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPD--VVSWNTMLTG 365

Query: 411 SRLHG 415
              HG
Sbjct: 366 CAQHG 370



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 122/250 (48%), Gaps = 27/250 (10%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND---VVASALVDMYAKCGSVNYS 284
           P+ ++ + ++  C  LG++  G++ H  +V S   F D   V+ + +V+MYAKCG ++ +
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDS--HFLDNHLVLQNIIVNMYAKCGCLDDA 142

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            ++F+ +    +VT+T++I G ++    R +L LF +M+  G++PN  T   +L A    
Sbjct: 143 RRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSE 202

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP--- 401
             +D G Q L +   KYG        + +VDM  R G +D A       Q+  DG P   
Sbjct: 203 HGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAA-------QLAFDGMPTKS 254

Query: 402 -LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA--------GEWE 452
            + W  L+S     G  + A+    ++   N Q    + T S+ ++          G+W 
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQ--PTHFTYSSVFSACASIGALEQGKWV 312

Query: 453 NVHSLRSEMK 462
           + H ++S +K
Sbjct: 313 HAHMIKSGLK 322


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/560 (39%), Positives = 343/560 (61%), Gaps = 7/560 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   LK  +  + +    L+  Y +  +   A+Q F+EM + +++ ++ +++ Y    
Sbjct: 226 SVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSD 285

Query: 108 QPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           + + AL LF +M   ++V PN FTFA+V++AC+ L  L  G QIH+ +   G   N+ V 
Sbjct: 286 KSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVS 345

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+D+Y KC +++ + ++F     +N V+W +IIV + Q   G +AL +F   N    D
Sbjct: 346 NALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFS--NMLGLD 403

Query: 227 -RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P +   +SV+ A ASL  L  G+  H + +++    + VVA++L+DMYAKCG ++ + 
Sbjct: 404 IQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDAR 463

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             F+++     V++ ++I G + +GLG  +L+LF+ M     KPN +TFVGVL ACS++G
Sbjct: 464 LTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAG 523

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+D+G  H  SM + YGI P  +HYTC+V +LGR+G+ DEA KL   I   P    ++W 
Sbjct: 524 LLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQP--SVMVWR 581

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL A  +H  +D+    + +++E   Q    +V LSN YA A  W+NV  +R  MK+  
Sbjct: 582 ALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKK 641

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + KEPG SWVE +   + F  G+        + ++L  L +K ++ GYV     +V +DV
Sbjct: 642 VKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYV-PDCSVVLLDV 700

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ED+ +E ++ +HSERLALAFGLI IP G +IRI+KNLR+C DCH V KL+S IV+R+ V+
Sbjct: 701 EDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVI 760

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD+NRFHHFR G CSCGD+W
Sbjct: 761 RDINRFHHFRQGVCSCGDYW 780



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 205/394 (52%), Gaps = 24/394 (6%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH+ + K G  ++ F    LI+ Y        ARQ+FD +   ++VS+T ++A Y    
Sbjct: 125 SVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENY 184

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + +LLLF +M      PN FT +  +K+C+ L     GK +H       +  +L V  
Sbjct: 185 CHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGI 244

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+++Y K  ++  A++ F+ M   +++ W+ +I  +AQ+ +  EALE+F      S   
Sbjct: 245 ALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV 304

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN    ASV+ ACASL  L  G   H  V++ G + N  V++AL+D+YAKCG +  S K+
Sbjct: 305 PNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F   +  + V + ++IVG  + G G  +L+LF+ M+   I+P +VT+  VL A +    +
Sbjct: 365 FTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVAL 424

Query: 348 DEGIQ----HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY----KLAKSIQVDPDG 399
           + G Q     + +MY K  ++ ++     ++DM  + GR+D+A     K+ K  +V    
Sbjct: 425 EPGRQIHSLTIKTMYNKDSVVANS-----LIDMYAKCGRIDDARLTFDKMDKQDEVS--- 476

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
               W  L+    +HG   + +EA N L +  QQ
Sbjct: 477 ----WNALICGYSIHG---LGMEALN-LFDMMQQ 502



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 3/363 (0%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           H+ A+ +QQ    +   +  S+H  ILK G   + F  N L+N YV     + A +LFDE
Sbjct: 4   HSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDE 63

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M   N VS+ +L  G+    Q Q A  L  ++       N+F F T++K    +    T 
Sbjct: 64  MPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTC 123

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
             +H ++   G Q +  V ++L+D Y  C +VD AR+VFD +  +++VSWT ++  +A+N
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               ++L +F +       RPN   +++ + +C  L     GK  HG  ++   + +  V
Sbjct: 184 YCHEDSLLLFCQMRIMGY-RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYV 242

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRG 326
             AL+++Y K G +  + + F  +    ++ ++ MI   A+    + +L+LF  M  S  
Sbjct: 243 GIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV 302

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + PN+ TF  VL AC+   L++ G Q + S   K G+  +      ++D+  + G ++ +
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 387 YKL 389
            KL
Sbjct: 362 VKL 364


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 344/588 (58%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV-------------- 94
           ++ +ILK GF S+ F  + L++ Y +L     A++ FDEM E NVV              
Sbjct: 160 INGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGM 219

Query: 95  -----------------SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                            S+T ++ G +  G  + AL +F++M       ++FTF +V+ A
Sbjct: 220 IEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTA 279

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  L  L  GKQIH ++     + N+ V S+LVDMY KC  +  A  VF  M  +NV+SW
Sbjct: 280 CGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISW 339

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T+++V + QN    EA+++F E      + P+   L SVI++CA+L  L  G   H   +
Sbjct: 340 TAMLVGYGQNGFSEEAVKIFFEMQRNGVE-PDDFTLGSVISSCANLASLEEGAQFHCRAL 398

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
            SG      V++AL+ +Y KCGS   S ++F  ++    V++T+++ G A++G    ++ 
Sbjct: 399 VSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIG 458

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M++ G+KP+ VTF+GVL ACS +GLV++G+Q+ +SM +++GI+P   H TC++D+L
Sbjct: 459 LFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLL 518

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR GRL+EA     ++   PD   + W TLLS+ R+HG ++I   A++ LI    Q   +
Sbjct: 519 GRAGRLEEARNFINNMPCHPD--VVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPAS 576

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LS+ YA  G+W+ V  LR  M+   + KEPG SW++ + + + F A +       ++
Sbjct: 577 YVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQI 636

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            + L +L  KM E GYV   +  V  DVE+  + +++  HSE+LA+AFGLI +P G+ IR
Sbjct: 637 YAELEKLNYKMIEEGYVPDMSS-VLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIR 695

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR+C DCH+  K IS I +R+ +VRD  RFH F++G+CSCGDFW
Sbjct: 696 VIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 209/458 (45%), Gaps = 70/458 (15%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           SS +  A  ++   E ++      +H  ILK+     TF  N+LI  Y +L     A  +
Sbjct: 3   SSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHV 62

Query: 85  FDEMLEPNVVSYTSLM-------------------------------AGYINMGQPQIAL 113
           FD + +PN+ S+ +++                               +GY N G    A+
Sbjct: 63  FDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAV 122

Query: 114 LLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
            +++ ML +     N  TF+T++  CS    +  G+QI+  I  FGF  ++ V S LVDM
Sbjct: 123 RVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDM 182

Query: 173 YGKCNDVDGARRVFDLMGCRNVV-------------------------------SWTSII 201
           Y K   +  A+R FD M  RNVV                               SWT +I
Sbjct: 183 YTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMI 242

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
               QN    EAL+MFRE         +Q    SV+ AC SL  L  GK  H  V+R+  
Sbjct: 243 TGLMQNGLEREALDMFREMRLAGFAM-DQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH 301

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           + N  V SALVDMY+KC S+  ++ VF R+   +V+++T+M+VG  + G    ++ +F E
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFE 361

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           M   G++P+D T   V+ +C++   ++EG Q H  ++    G+I        ++ + G+ 
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVS--GLISFITVSNALITLYGKC 419

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           G  + +++L   + +  +   + W  LL+     G+ +
Sbjct: 420 GSTENSHRLFTEMNIRDE---VSWTALLAGYAQFGKAN 454



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 145/289 (50%), Gaps = 9/289 (3%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L++L     +H+ ++++    N F  + L++ Y + +  + A  +F  M + NV
Sbjct: 277 LTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNV 336

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+T+++ GY   G  + A+ +F +M  N V P++FT  +VI +C+ LA L  G Q H  
Sbjct: 337 ISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCR 396

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G    + V ++L+ +YGKC   + + R+F  M  R+ VSWT+++  +AQ  + +E 
Sbjct: 397 ALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANET 456

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALV 272
           + +F         +P+      V++AC+  G +  G +    ++   G        + ++
Sbjct: 457 IGLFERMLAHGL-KPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCII 515

Query: 273 DMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLD 317
           D+  + G +  +    N +  +P VV + +++     +G   +G+++ D
Sbjct: 516 DLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAAD 564



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 185/465 (39%), Gaps = 94/465 (20%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           +L  +  P  F    +I A   L +L     +  HI     Q NL   ++++ +Y K   
Sbjct: 31  ILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP----QPNLFSWNTILSVYSKLGL 86

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +   +++F+LM  R+ VSW   I  +A      +A+ +++     +    N+   ++++ 
Sbjct: 87  LSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLI 146

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK--------------------- 277
            C+    +  G+  +G +++ G   +  V S LVDMY K                     
Sbjct: 147 LCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVM 206

Query: 278 ----------CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
                     CG +  S ++F  +     +++T MI G  + GL R +LD+F EM   G 
Sbjct: 207 CNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGF 266

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQ---------HLDS---------MYRKYGIIPDAK- 368
             +  TF  VL AC     + EG Q         H D+         MY K   I  A+ 
Sbjct: 267 AMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAET 326

Query: 369 -----------HYTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLSA---- 410
                       +T ++   G+ G  +EA K+   +Q   V+PD   L  G+++S+    
Sbjct: 327 VFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTL--GSVISSCANL 384

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
           + L         A    + S   V+NA +TL   Y   G  EN H L +EM         
Sbjct: 385 ASLEEGAQFHCRALVSGLISFITVSNALITL---YGKCGSTENSHRLFTEMN-------- 433

Query: 471 GCSWVEIRDQT--YAFYAGNALFERGSEVLSLL-RELERKMKERG 512
                 IRD+    A  AG A F + +E + L  R L   +K  G
Sbjct: 434 ------IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDG 472


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/582 (37%), Positives = 353/582 (60%), Gaps = 39/582 (6%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L +T + N +I+ +++     +A+  F++M+E +VVS+ ++++GY   G  + AL +F K
Sbjct: 208 LKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSK 267

Query: 119 ML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-----ETFGFQYNLVVC------ 166
           ML  +   P++FT A+ + AC+ L +L  GKQIH HI     +TFG   N ++       
Sbjct: 268 MLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSG 327

Query: 167 ----------------------SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
                                 ++L+D Y K  D++ ARR+FD +  R+VV+WT++IV +
Sbjct: 328 GVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGY 387

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN    +A+E+FR    +   +PN + LA++++  +SL  L  G+  H    RSG   +
Sbjct: 388 VQNGFNQDAMELFRSM-IKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASS 446

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V++AL+ MYAK GS+N +  VFN I      +T+TSMI+  A++GLG  +L LF  M+
Sbjct: 447 VSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERML 506

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             GIKP+ +T+VGVL AC+H GLV++G  + + M   + IIP   HY C++D+ GR G L
Sbjct: 507 ENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLL 566

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            EA+   +++ ++PD   + WG+LL++ ++H  V++A  A+ +L+    + + AY  L+N
Sbjct: 567 QEAHAFIENMPIEPD--VIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALAN 624

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            Y+  G+WEN  ++R  MK  G+ K+ G SWV+I+++ + F   + L  +   +  ++ +
Sbjct: 625 VYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAK 684

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           + +++K+ G+V   T  V  D+E+E +E+I+  HSE+LA+AFGLI  P+  T+RIMKNLR
Sbjct: 685 IWKEIKKMGFVP-DTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLR 743

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   K IS +V R+ +VRD  RFHHF+NG CSC D+W
Sbjct: 744 VCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 224/493 (45%), Gaps = 98/493 (19%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK---------------- 76
           F+Q+  + K   +  S+H+ I+K+G     F +N+L+N Y +                  
Sbjct: 19  FLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKS 78

Query: 77  ---------------KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
                          + + A ++F+EM EP+ VS+T+++ GY  MGQ + A+ +F++M+ 
Sbjct: 79  VFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVS 138

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           + V P +FT   V+ +C+ +  L  G+++H+ +   G    + V +SL++MY K  D   
Sbjct: 139 DDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVT 198

Query: 182 ARRVFDLMGC-------------------------------RNVVSWTSIIVAHAQNAQG 210
           A+ VFD M                                 R+VVSW ++I  + Q+   
Sbjct: 199 AKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFD 258

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS----------- 259
            EAL++F +    S  +P++  LAS ++ACA+L  L  GK  H  ++R+           
Sbjct: 259 REALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNA 318

Query: 260 ---------GCEFN------------DVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
                    G E              DV+A +AL+D Y K G +N + ++F+ +    VV
Sbjct: 319 LISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVV 378

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            +T+MIVG  + G  + +++LF  MI  G KPN+ T   +L   S    +D G Q   S 
Sbjct: 379 AWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASA 438

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R  G          ++ M  ++G +++A  +   I    D   + W +++ A   HG  
Sbjct: 439 TRS-GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRD--TITWTSMIIALAQHGLG 495

Query: 418 DIAVEASNQLIES 430
           + A+    +++E+
Sbjct: 496 EEALTLFERMLEN 508



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 140/264 (53%), Gaps = 14/264 (5%)

Query: 49  VHSEILKSGFLSN--TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           +  +I++   +SN        L++ YV+L     AR++FD +   +VV++T+++ GY+  
Sbjct: 331 IAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQN 390

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G  Q A+ LF+ M+     PN +T AT++   S LA L  G+QIH      G   ++ V 
Sbjct: 391 GFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVS 450

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           ++L+ MY K   ++ AR VF+L+   R+ ++WTS+I+A AQ+  G EAL +F     ++ 
Sbjct: 451 NALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERM-LENG 509

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA-----LVDMYAKCGS 280
            +P+      V++AC  +G +  G+  + ++  +    + ++ +      ++D++ + G 
Sbjct: 510 IKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNA----HKIIPTPSHYACMIDLFGRAGL 565

Query: 281 VNYSDKVFNRIS-NPSVVTYTSMI 303
           +  +      +   P V+ + S++
Sbjct: 566 LQEAHAFIENMPIEPDVIAWGSLL 589



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAK G +  + +VF  +  P  V++T+MIVG  + G    ++ +F EM+S  + P   T 
Sbjct: 89  YAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTL 148

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
             VL +C+    +  G + + S   K+G+         +++M  ++G    A  +   ++
Sbjct: 149 TNVLASCAAVECLGIG-RKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMK 207

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           +        W T++S+    G VD+A     Q+IE +    NA ++  N +    E
Sbjct: 208 LKSTSS---WNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDRE 260



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           +H+   +SG  S+    N LI  Y +      AR +F+ +  + + +++TS++      G
Sbjct: 434 IHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG 493

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL LF++ML N + P+  T+  V+ AC+ +  +  G+  +  ++     + ++   
Sbjct: 494 LGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQN---AHKIIPTP 550

Query: 168 S----LVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
           S    ++D++G+   +  A    + M    +V++W S++ +
Sbjct: 551 SHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLAS 591


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 343/572 (59%), Gaps = 17/572 (2%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINM 106
            +H   +++G+  +    + L+  Y +  +   AR++FD   L   + ++ ++++GY + 
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 107 GQPQIALLLFQKMLGNLVW--PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--N 162
           G  + ALL+F++M  +     P+EFTFA+++KACS L     G Q+H  +   GF    N
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASN 246

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            ++  +LVDMY KC  +  A +VF+ +  +NV+ WT+++V HAQ  Q  EALE+FR F +
Sbjct: 247 AILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRF-W 305

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +S  RP+ H+L+SV+   A    +  G+  H   ++     +    +++VDMY KCG  +
Sbjct: 306 RSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPD 365

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++++F  +  P+VV++T+M+ G  K+GLGR ++ LF EM + G++P++VT++ +L ACS
Sbjct: 366 EAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 425

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLVDE  ++   + R   + P A+HY C+VD+LGR G L EA  L +++ ++P  G  
Sbjct: 426 HAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVG-- 483

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W TLLSA R+H  V +  EA + L+  +      YVTLSN  A AGEW   H +R  M+
Sbjct: 484 VWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMR 543

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFE---RGSEVLSLLRELERKMKER-GYVGGKT 518
           R G+ K+ GCSWVE+  + + FY G    E   +  ++  +LR++E +M+E+ GY     
Sbjct: 544 RRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDA 603

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAF-----GLISIPKGITIRIMKNLRMCRDCHDVFK 573
                DV++E+R E +  HSERLA+       G+     G  IR+ KNLR+C DCH+ FK
Sbjct: 604 RFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFK 663

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S +V R  VVRD NRFH F +GSCSC D+W
Sbjct: 664 GLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 695



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 195/373 (52%), Gaps = 11/373 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I K GF S+T   N+LI+ YV+  +  +A ++F  M + NVVS+T+LM G++  G 
Sbjct: 26  LHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGD 85

Query: 109 PQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               L L  +M   +   PNE+T +  +KAC ++ D   G  IH      G+Q + VV S
Sbjct: 86  ATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVAS 145

Query: 168 SLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREF-NYQSR 225
           SLV +Y K   +  ARRVFD  G    + +W +++  +A    G +AL +FRE   ++ +
Sbjct: 146 SLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQ 205

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNY 283
            +P++   AS++ AC+ LG    G   H  +  SG     N ++A ALVDMY KC  +  
Sbjct: 206 HQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPV 265

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + +VF R+   +V+ +T+++VG A+ G    +L+LF      G +P+      V+   + 
Sbjct: 266 AMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLAD 325

Query: 344 SGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             LV++G Q H   +    G   D      +VDM  + G  DEA ++ + ++  P+   +
Sbjct: 326 FALVEQGRQVHCYGIKDPTGT--DVSAGNSIVDMYLKCGLPDEAERMFREMRA-PN--VV 380

Query: 403 LWGTLLSASRLHG 415
            W T+++    HG
Sbjct: 381 SWTTMVNGLGKHG 393



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 166/333 (49%), Gaps = 11/333 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            A +++A +  + L  G Q+H  I   GF  + ++ ++L+DMY KC ++D A  VF  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT+++V   ++      L +  E    S   PN++ L++ + AC  +G   +G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKY 309
             HG+ VR+G + +DVVAS+LV +Y+K G +  + +VF+       + T+ +M+ G A  
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 310 GLGRFSLDLFNEMISR--GIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPD 366
           G GR +L +F EM       +P++ TF  +L ACS  G   EG Q H       +    +
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASN 246

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
           A     +VDM  +  RL  A ++ + ++       + W  ++      G+V  A+E   +
Sbjct: 247 AILAGALVDMYVKCRRLPVAMQVFERLERK---NVIQWTAVVVGHAQEGQVTEALELFRR 303

Query: 427 LIES----NQQVANAYVTLSNTYALAGEWENVH 455
              S    +  V ++ V +   +AL  +   VH
Sbjct: 304 FWRSGARPDSHVLSSVVGVLADFALVEQGRQVH 336



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           Q M+A ++ A A    L  G   HG + + G   + ++ + L+DMY KCG ++ + +VF 
Sbjct: 4   QKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFG 63

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVD 348
            + + +VV++T+++VG  ++G     L L  EM  +    PN+ T    L AC   G   
Sbjct: 64  GMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTA 123

Query: 349 EGI 351
            G+
Sbjct: 124 AGV 126



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 9/201 (4%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ 79
           R   R   H  +  +  L +   +     VH   +K    ++    N +++ Y++     
Sbjct: 306 RSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPD 365

Query: 80  VARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
            A ++F EM  PNVVS+T+++ G    G  + A+ LF++M    V P+E T+  ++ ACS
Sbjct: 366 EAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 425

Query: 140 MLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
               +   ++  + I    T   +     C  +VD+ G+  ++  AR +   M     V 
Sbjct: 426 HAGLVDECRRYFSCIRRDRTVRPKAEHYAC--MVDLLGRAGELREARDLIRTMPMEPTVG 483

Query: 197 -WTSIIVA---HAQNAQGHEA 213
            W +++ A   H   A G EA
Sbjct: 484 VWQTLLSACRVHKDVAVGREA 504


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/564 (37%), Positives = 337/564 (59%), Gaps = 4/564 (0%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           LISL  +VHS  +K+ F       N L++ Y +      A+ +F EM + +VVSYTS++A
Sbjct: 311 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 370

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G    A+ LF++M    + P+ +T   V+  C+    L  GK++H  I+     +
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 430

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V ++L+DMY KC  +  A  VF  M  ++++SW +II  +++N   +EAL +F    
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            + R  P++  +A V+ ACASL     G+  HG ++R+G   +  VA++LVDMYAKCG++
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  +F+ I++  +V++T MI G   +G G+ ++ LFN+M   GI+ ++++FV +L+AC
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLVDEG +  + M  +  I P  +HY C+VDML RTG L +AY+  +++ + PD   
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDA-- 668

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +WG LL   R+H  V +A + + ++ E   +    YV ++N YA A +WE V  LR  +
Sbjct: 669 TIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRI 728

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
            + G+ K PGCSW+EI+ +   F AG++       + + LR++  +M E GY    T   
Sbjct: 729 GQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGY-SPLTKYA 787

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            +D E+  +EE +  HSE+LA+A G+IS   G  IR+ KNLR+C DCH++ K +S +  R
Sbjct: 788 LIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRR 847

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + V+RD NRFH F++G CSC  FW
Sbjct: 848 EIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 197/405 (48%), Gaps = 7/405 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T    +Q   + K L     V + I  +GF+ ++   + L   Y      + A ++FDE+
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
                + +  LM      G    ++ LF+KM+ + V  + +TF+ V K+ S L  +  G+
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H  I   GF     V +SLV  Y K   VD AR+VFD M  R+V+SW SII  +  N 
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVV 267
              + L +F +    S    +   + SV   CA   RL+S G+  H + V++     D  
Sbjct: 276 LAEKGLSVFVQM-LVSGIEIDLATIVSVFAGCAD-SRLISLGRAVHSIGVKACFSREDRF 333

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            + L+DMY+KCG ++ +  VF  +S+ SVV+YTSMI G A+ GL   ++ LF EM   GI
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            P+  T   VL+ C+   L+DEG + +    ++  +  D      ++DM  + G + EA 
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
            +   ++V      + W T++     +   + A+   N L+E  +
Sbjct: 453 LVFSEMRVKD---IISWNTIIGGYSKNCYANEALSLFNLLLEEKR 494


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/564 (37%), Positives = 337/564 (59%), Gaps = 4/564 (0%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           LISL  +VHS  +K+ F       N L++ Y +      A+ +F EM + +VVSYTS++A
Sbjct: 160 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 219

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G    A+ LF++M    + P+ +T   V+  C+    L  GK++H  I+     +
Sbjct: 220 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 279

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V ++L+DMY KC  +  A  VF  M  ++++SW +II  +++N   +EAL +F    
Sbjct: 280 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 339

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            + R  P++  +A V+ ACASL     G+  HG ++R+G   +  VA++LVDMYAKCG++
Sbjct: 340 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 399

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  +F+ I++  +V++T MI G   +G G+ ++ LFN+M   GI+ ++++FV +L+AC
Sbjct: 400 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 459

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLVDEG +  + M  +  I P  +HY C+VDML RTG L +AY+  +++ + PD   
Sbjct: 460 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDA-- 517

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +WG LL   R+H  V +A + + ++ E   +    YV ++N YA A +WE V  LR  +
Sbjct: 518 TIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRI 577

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
            + G+ K PGCSW+EI+ +   F AG++       + + LR++  +M E GY    T   
Sbjct: 578 GQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGY-SPLTKYA 636

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            +D E+  +EE +  HSE+LA+A G+IS   G  IR+ KNLR+C DCH++ K +S +  R
Sbjct: 637 LIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRR 696

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + V+RD NRFH F++G CSC  FW
Sbjct: 697 EIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 197/380 (51%), Gaps = 6/380 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ILKSGF       N L+  Y++ ++   AR++FDEM E +V+S+ S++ GY++ G 
Sbjct: 66  LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 125

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L +F +ML + +  +  T  +V   C+    +  G+ +H+      F      C++
Sbjct: 126 AEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT 185

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC D+D A+ VF  M  R+VVS+TS+I  +A+     EA+++F E   +    P
Sbjct: 186 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS-P 244

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + + +V+N CA    L  GK  H  +  +   F+  V++AL+DMYAKCGS+  ++ VF
Sbjct: 245 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 304

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLV 347
           + +    ++++ ++I G +K      +L LFN ++  +   P++ T   VL AC+     
Sbjct: 305 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 364

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           D+G + +     + G   D      +VDM  + G L  A+ L   I        + W  +
Sbjct: 365 DKG-REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI---ASKDLVSWTVM 420

Query: 408 LSASRLHGRVDIAVEASNQL 427
           ++   +HG    A+   NQ+
Sbjct: 421 IAGYGMHGFGKEAIALFNQM 440



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 175/349 (50%), Gaps = 7/349 (2%)

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FDE+     + +  LM      G    ++ LF+KM+ + V  + +TF+ V K+ S L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
             G+Q+H  I   GF     V +SLV  Y K   VD AR+VFD M  R+V+SW SII  +
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEF 263
             N    + L +F +    S    +   + SV   CA   RL+S G+  H + V++    
Sbjct: 121 VSNGLAEKGLSVFVQM-LVSGIEIDLATIVSVFAGCAD-SRLISLGRAVHSIGVKACFSR 178

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
            D   + L+DMY+KCG ++ +  VF  +S+ SVV+YTSMI G A+ GL   ++ LF EM 
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             GI P+  T   VL+ C+   L+DEG + +    ++  +  D      ++DM  + G +
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
            EA  +   ++V      + W T++     +   + A+   N L+E  +
Sbjct: 298 QEAELVFSEMRVKD---IISWNTIIGGYSKNCYANEALSLFNLLLEEKR 343


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 346/592 (58%), Gaps = 9/592 (1%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVR 74
           L   NK   C         L+ C  +        +HS ++K    S++F    LI+ Y +
Sbjct: 200 LREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSK 259

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
                 AR +F  M E +++++ ++++G+    + + A  LF  M    +  N+ T +TV
Sbjct: 260 CNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTV 319

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
           +K+ + L      +QIH      GF+++  V +SL+D YGKC  V+ A RVF+     ++
Sbjct: 320 LKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDL 379

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAH 253
           V +TS++ A+AQ+ QG EAL ++ E   Q R  +P+  + +S++NACASL     GK  H
Sbjct: 380 VLFTSLVTAYAQDGQGEEALRLYLEM--QDRGIKPDSFVCSSLLNACASLSAYEQGKQVH 437

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
             +++ G   +    ++LV+MYAKCGS+  +   F+RI    +V++++MI G A++G G+
Sbjct: 438 VHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGK 497

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            +L LF +M+  G+ PN +T V VL AC+H+GLV E   + +SM   +GI P  +HY C+
Sbjct: 498 EALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACM 557

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           +D+LGR G+L+ A +L   +    +   L+WG LL A+R+H  +D+  +A+  L+    +
Sbjct: 558 IDLLGRAGKLEAAMELVNKMPFQANA--LVWGALLGAARIHKNIDLGEQAAEMLLALEPE 615

Query: 434 VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFER 493
            +  +V L+N YA  G W+ V  +R  MK   + KEPG SW+E++D+ Y F  G+    R
Sbjct: 616 KSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSR 675

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
            +E+ + L EL   +K+ GYV     +   DVE   +E+++  HSE+LA+AFGLI+ P G
Sbjct: 676 STEIYAKLDELSDLLKKAGYV-PMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPG 734

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             IR+ KNLR+C DCH V K IS IV R+ +VRD NRFHHFR GSCSCG++W
Sbjct: 735 APIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 208/382 (54%), Gaps = 7/382 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K G+ S+ F+ N L++ Y ++   + A  +FDE+ +P++VS+ +++AG +    
Sbjct: 133 IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEY 192

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L ++M  + + PN FT ++ +KAC+ +A    G+Q+H+ +       +  +   
Sbjct: 193 HHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVG 252

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KCN +D AR VF LM  R++++W ++I  H+QN +  EA  +F   + +     
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGF- 311

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ  L++V+ + A+L      +  H + ++SG EF++ V ++L+D Y KCG V  + +VF
Sbjct: 312 NQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVF 371

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                  +V +TS++   A+ G G  +L L+ EM  RGIKP+      +L+AC+     +
Sbjct: 372 EESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYE 431

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H+  +  K+G + D      +V+M  + G +++A      I   P  G + W  +
Sbjct: 432 QGKQVHVHIL--KFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRI---PVRGIVSWSAM 486

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           +     HG    A++   Q+++
Sbjct: 487 IGGLAQHGYGKEALQLFKQMLK 508



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 151/284 (53%), Gaps = 5/284 (1%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           NEF F +V+KAC++  DL+ GKQ+H  +   GF  +  V +SLV +Y KC     AR +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D +  R+VVSW ++   +  +    EA+ +F +    S  RPN+  L+S+IN C  L   
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDM-VLSGIRPNEFSLSSMINVCTGLEDS 127

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           V G+  HG +++ G + +   A+ALVDMYAK G +  +  VF+ I+ P +V++ ++I G 
Sbjct: 128 VQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGC 187

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +     +L+L  EM   G+ PN  T    L AC+   L + G Q L S   K  +  D
Sbjct: 188 VLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQ-LHSSLIKMDMGSD 246

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           +     ++DM  +   +D+A  + K +   P+   + W  ++S 
Sbjct: 247 SFLGVGLIDMYSKCNSMDDARLVFKLM---PERDMIAWNAVISG 287



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 182/360 (50%), Gaps = 5/360 (1%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C   K L+    VH  ++ +GF S+ F  N L+  Y +      AR LFD + 
Sbjct: 13  FPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIP 72

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + +VVS+ +L + Y++      A+ LF  M+ + + PNEF+ +++I  C+ L D + G++
Sbjct: 73  DRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRK 132

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH ++   G+  +    ++LVDMY K   ++ A  VFD +   ++VSW +II     +  
Sbjct: 133 IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEY 192

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
            H ALE+ RE N +S   PN   L+S + ACA +     G+  H  +++     +  +  
Sbjct: 193 HHRALELLREMN-KSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGV 251

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L+DMY+KC S++ +  VF  +    ++ + ++I G ++      +  LF  M + GI  
Sbjct: 252 GLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGF 311

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N  T   VL + + +   +   + + ++  K G   D      ++D  G+ G +++A ++
Sbjct: 312 NQTTLSTVLKSIA-ALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/568 (36%), Positives = 341/568 (60%), Gaps = 5/568 (0%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E K L    ++H   ++  F +       L++ Y + +    AR++FD M   N VS+++
Sbjct: 222 EAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 99  LMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           ++ GY+     + AL LF +M L + + P   T  +V++AC+ L DL  G+++H +I   
Sbjct: 282 MIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL 341

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G   ++++ ++L+ MY KC  +D A R FD M  ++ VS+++I+    QN     AL +F
Sbjct: 342 GXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           R       D P+   +  V+ AC+ L  L  G  +HG ++  G   + ++ +AL+DMY+K
Sbjct: 402 RMMQLSGID-PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSK 460

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG ++++ +VFNR+    +V++ +MI+G   +GLG  +L LF+++++ G+KP+D+TF+ +
Sbjct: 461 CGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICL 520

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L +CSHSGLV EG    D+M R + I+P  +H  C+VD+LGR G +DEA+   +++  +P
Sbjct: 521 LSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP 580

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           D    +W  LLSA R+H  +++  E S ++     +    +V LSN Y+ AG W++   +
Sbjct: 581 D--VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI 638

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R   K  G+ K PGCSW+EI    +AF  G+    + S++   L EL  +MK  GY   +
Sbjct: 639 RITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGY-QAE 697

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
              VF DVE+E +E+I+  HSE+LA+AFG++++  G  I + KNLR+C DCH   K ++ 
Sbjct: 698 CSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTV 757

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I +R+  VRD NRFHHF+NG+C+CGDFW
Sbjct: 758 ITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 184/359 (51%), Gaps = 3/359 (0%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H ++   + K L     +H   LK+   +++  L+ L   Y+   +  +AR+LFDE+  P
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +V+ +  ++  Y   G    A+ L+  ML   V PN++T+  V+KACS L  +  G +IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           +H + FG + ++ VC++LVD Y KC  +  A+R+F  M  R+VV+W ++I   +      
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +A+++  +   +    PN   +  V+        L  GK  HG  VR   +   VV + L
Sbjct: 193 DAVQLIMQMQEEGI-CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPN 330
           +DMYAKC  + Y+ K+F+ +   + V++++MI G       + +L+LF++MI +  + P 
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPT 311

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            VT   VL AC+    +  G + L     K G + D      ++ M  + G +D+A + 
Sbjct: 312 PVTLGSVLRACAKLTDLSRG-RKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRF 369



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 175/354 (49%), Gaps = 6/354 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L+++     +HS     G  S+ F    L++ Y +      A++LF  M   +V
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++ +++AG    G    A+ L  +M    + PN  T   V+        L  GK +H +
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                F   +VV + L+DMY KC  +  AR++FD+MG RN VSW+++I  +  +    EA
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEA 295

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+F +   +    P    L SV+ ACA L  L  G+  H  +++ G   + ++ + L+ 
Sbjct: 296 LELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLS 355

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCG ++ + + F+ ++    V++++++ G  + G    +L +F  M   GI P+  T
Sbjct: 356 MYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTT 415

Query: 334 FVGVLHACSHSGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            +GVL ACSH   +  G   H   + R  G   D      ++DM  + G++  A
Sbjct: 416 MLGVLPACSHLAALQHGFCSHGYLIVR--GFATDTLICNALIDMYSKCGKISFA 467



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 4/194 (2%)

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           ++ AC     L   K  H   +++    +  V   L  +Y  C  V  + ++F+ I NPS
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           V+ +  +I   A  G    ++DL++ M+  G++PN  T+  VL ACS    +++G++ + 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           S  + +G+  D    T +VD   + G L EA +L  S+        + W  +++   L+G
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS---HRDVVAWNAMIAGCSLYG 189

Query: 416 RVDIAVEASNQLIE 429
             D AV+   Q+ E
Sbjct: 190 LCDDAVQLIMQMQE 203


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/613 (38%), Positives = 346/613 (56%), Gaps = 47/613 (7%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL--KKTQVARQLFDEMLE 90
            I +L +C +L  +  +H  +L+ G   + + L  LI    +L        R++ + +  
Sbjct: 53  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQF 112

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N   +T+++ GY   G+   A+ ++  M    + P  FTF+ ++KAC  + DL  G+Q 
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172

Query: 151 HTH---IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA-- 205
           H     +  F F Y   V ++++DMY KC  +  AR+VFD M  R+V+SWT +I A+A  
Sbjct: 173 HAQTFRLRGFCFVY---VGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARV 229

Query: 206 -----------------------------QNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                                        QNA+  EALE F     +S  R ++  +A  
Sbjct: 230 GNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME-KSGIRADEVTVAGY 288

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRISNP 294
           I+ACA LG       A  +  +SG   +D  V+ SAL+DMY+KCG+V  +  VF  ++N 
Sbjct: 289 ISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNK 348

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQH 353
           +V +Y+SMI+G A +G  + +LDLF+ M+++  IKPN VTFVG L ACSHSGLVD+G Q 
Sbjct: 349 NVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQV 408

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
             SMY+ +G+ P   HYTC+VD+LGR GRL EA +L K++ V+P GG  +WG LL A R+
Sbjct: 409 FASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGG--VWGALLGACRI 466

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           H   DIA  A+  L E    +   Y+ LSN Y+ AG+W  V S+R  +K  G+ K P  S
Sbjct: 467 HNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVS 526

Query: 474 WVEIRD-QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           WV  ++ Q + F+ GN       ++   L EL  ++   GY    + + + DV D A+  
Sbjct: 527 WVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPY-DVSDNAKRL 585

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           I+  H+E+LALAF L++  +  TI+IMKNLRMC+DCH   +L S++  R  ++RD  RFH
Sbjct: 586 ILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFH 645

Query: 593 HFRNGSCSCGDFW 605
           HFR+G+CSCGDFW
Sbjct: 646 HFRSGACSCGDFW 658


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 332/557 (59%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+  +K+G + ++F    LI+ Y +  K + A  LF      ++ S+ ++M GYI  G 
Sbjct: 1059 IHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGD 1118

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL L+  M  +    ++ T     KA   L  L  GKQIH  +   GF  +L V S 
Sbjct: 1119 FPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSG 1178

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            ++DMY KC +++ ARRVF  +   + V+WT++I    +N Q   AL  + +    S+ +P
Sbjct: 1179 VLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRL-SKVQP 1237

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +++  A+++ AC+ L  L  G+  H  +V+  C F+  V ++LVDMYAKCG++  +  +F
Sbjct: 1238 DEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1297

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             R +   + ++ +MIVG A++G  + +L  F  M SRG+ P+ VTF+GVL ACSHSGLV 
Sbjct: 1298 KRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVS 1357

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            E  ++  SM + YGI P+ +HY+C+VD L R GR++EA K+  S+  +      ++ TLL
Sbjct: 1358 EAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASAS--MYRTLL 1415

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            +A R+    +     + +L+      + AYV LSN YA A +WENV S R+ M++  + K
Sbjct: 1416 NACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKK 1475

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            +PG SWV+++++ + F AG+   E    + + +  + ++++E GYV   T    VDVE+E
Sbjct: 1476 DPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYV-PDTDFALVDVEEE 1534

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +E  +  HSE+LA+A+GL+  P   T+R++KNLR+C DCH   K IS + +R+ V+RD 
Sbjct: 1535 DKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDA 1594

Query: 589  NRFHHFRNGSCSCGDFW 605
            NRFHHFRNG CSCGD+W
Sbjct: 1595 NRFHHFRNGICSCGDYW 1611



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 178/407 (43%), Gaps = 43/407 (10%)

Query: 48   SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
            S+H   +K G   + F    L+N Y +    + AR LFD M   +VV +  +M  Y++  
Sbjct: 781  SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
                A+LLF +       P++ T  T+ +      +++  KQ   +     F Y      
Sbjct: 841  LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKL-FMY------ 893

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
                      D DG+          +V+ W   +    Q  +  EA++ F +    SR  
Sbjct: 894  ----------DDDGS----------DVIVWNKALSRFLQRGEAWEAVDCFVDM-INSRVA 932

Query: 228  PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             +      ++   A L  L  GK  HG+V+RSG +    V + L++MY K GSV+ +  V
Sbjct: 933  CDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSV 992

Query: 288  FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
            F +++   ++++ +MI G    GL   S+ +F  ++   + P+  T   VL ACS     
Sbjct: 993  FGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSL--- 1049

Query: 348  DEGIQHLDSMYR----KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
             EG  +L +       K G++ D+   T ++D+  + G+++E    A+ + V+ DG  L 
Sbjct: 1050 -EGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEE----AEFLFVNQDGFDLA 1104

Query: 404  -WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             W  ++    + G    A+     + ES ++  +  +TL N    AG
Sbjct: 1105 SWNAIMHGYIVSGDFPKALRLYILMQESGER--SDQITLVNAAKAAG 1149



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-- 190
           ++++     +DL  GK+ H  I T G   +  V ++L+ MY KC  +  AR++FD     
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 191 CRNVVSWTSIIVAHAQNA-QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
            R++V+W +I+ A A +A + H+   +FR    +S     +H LA V   C       + 
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLR-RSVVSTTRHTLAPVFKMCLLSASPSAS 779

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  HG  V+ G +++  VA ALV++YAK G +  +  +F+ ++   VV +  M+      
Sbjct: 780 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTF 334
            L   ++ LF+E    G +P+DVT 
Sbjct: 840 CLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 178/407 (43%), Gaps = 49/407 (12%)

Query: 30   KAHFIQQLQECKHLISLA----------SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ 79
            +AH I  L +C  ++  A            H+ IL SG   + F  N+LI  Y +     
Sbjct: 649  RAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLS 708

Query: 80   VARQLFDEMLEPN--VVSYTSLMAGYI-NMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
             AR+LFD   + N  +V++ ++++    +  +      LF+ +  ++V     T A V K
Sbjct: 709  SARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFK 768

Query: 137  ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
             C + A     + +H +    G Q+++ V  +LV++Y K   +  AR +FD M  R+VV 
Sbjct: 769  MCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVL 828

Query: 197  WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
            W  ++ A+      +EA+ +F EF +++  RP+   L        +L R+V  K      
Sbjct: 829  WNVMMKAYVDTCLEYEAMLLFSEF-HRTGFRPDDVTL-------RTLSRVVKCK------ 874

Query: 257  VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS-VVTYTSMIVGAAKYGLGRFS 315
             ++  E     A              Y+ K+F    + S V+ +   +    + G    +
Sbjct: 875  -KNILELKQFKA--------------YATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEA 919

Query: 316  LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
            +D F +MI+  +  + +TFV +L   +    ++ G Q +  +  + G+        C+++
Sbjct: 920  VDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQ-IHGIVMRSGLDQVVSVGNCLIN 978

Query: 376  MLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            M  + G +  A  +   + +VD     + W T++S   L G  + +V
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVD----LISWNTMISGCTLSGLEECSV 1021


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 343/572 (59%), Gaps = 17/572 (2%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINM 106
            +H   +++G+  +    + L+  Y +  +   AR++FD   L   + ++ ++++GY + 
Sbjct: 80  GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 139

Query: 107 GQPQIALLLFQKMLGNLVW--PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--N 162
           G  + ALL+F++M  +     P+EFTFA+++KACS L     G Q+H  +   GF    N
Sbjct: 140 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASN 199

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            ++  +LVDMY KC  +  A +VF+ +  +NV+ WT+++V HAQ  Q  EALE+FR F +
Sbjct: 200 AILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRF-W 258

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +S  RP+ H+L+SV+   A    +  G+  H   ++     +    +++VDMY KCG  +
Sbjct: 259 RSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPD 318

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++++F  +  P+VV++T+M+ G  K+GLGR ++ LF EM + G++P++VT++ +L ACS
Sbjct: 319 EAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 378

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLVDE  ++   + R   + P A+HY C+VD+LGR G L EA  L +++ ++P  G  
Sbjct: 379 HAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVG-- 436

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W TLLSA R+H  V +  EA + L+  +      YVTLSN  A AGEW   H +R  M+
Sbjct: 437 VWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMR 496

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFE---RGSEVLSLLRELERKMKER-GYVGGKT 518
           R G+ K+ GCSWVE+  + + FY G    E   +  ++  +LR++E +M+E+ GY     
Sbjct: 497 RRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDA 556

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAF-----GLISIPKGITIRIMKNLRMCRDCHDVFK 573
                DV++E+R E +  HSERLA+       G+     G  IR+ KNLR+C DCH+ FK
Sbjct: 557 RFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFK 616

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S +V R  VVRD NRFH F +GSCSC D+W
Sbjct: 617 GLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 648



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 181/350 (51%), Gaps = 11/350 (3%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFT 130
           YV+  +  +A ++F  M + NVVS+T+LM G++  G     L L  +M   +   PNE+T
Sbjct: 2   YVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYT 61

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            +  +KAC ++ D   G  IH      G+Q + VV SSLV +Y K   +  ARRVFD  G
Sbjct: 62  LSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAG 121

Query: 191 C-RNVVSWTSIIVAHAQNAQGHEALEMFREF-NYQSRDRPNQHMLASVINACASLGRLVS 248
               + +W +++  +A    G +AL +FRE   ++ + +P++   AS++ AC+ LG    
Sbjct: 122 LGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATRE 181

Query: 249 GKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           G   H  +  SG     N ++A ALVDMY KC  +  + +VF R+   +V+ +T+++VG 
Sbjct: 182 GAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGH 241

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIP 365
           A+ G    +L+LF      G +P+      V+   +   LV++G Q H   +    G   
Sbjct: 242 AQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGT-- 299

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           D      +VDM  + G  DEA ++ + ++  P+   + W T+++    HG
Sbjct: 300 DVSAGNSIVDMYLKCGLPDEAERMFREMRA-PN--VVSWTTMVNGLGKHG 346



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 143/292 (48%), Gaps = 11/292 (3%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC ++D A  VF  M  RNVVSWT+++V   ++      L +  E    S   PN++
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L++ + AC  +G   +G   HG+ VR+G + +DVVAS+LV +Y+K G +  + +VF+  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 292 S-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVGVLHACSHSGLVD 348
                + T+ +M+ G A  G GR +L +F EM       +P++ TF  +L ACS  G   
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           EG Q H       +    +A     +VDM  +  RL  A ++ + ++       + W  +
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERK---NVIQWTAV 237

Query: 408 LSASRLHGRVDIAVEASNQLIES----NQQVANAYVTLSNTYALAGEWENVH 455
           +      G+V  A+E   +   S    +  V ++ V +   +AL  +   VH
Sbjct: 238 VVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVH 289



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 9/201 (4%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ 79
           R   R   H  +  +  L +   +     VH   +K    ++    N +++ Y++     
Sbjct: 259 RSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPD 318

Query: 80  VARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
            A ++F EM  PNVVS+T+++ G    G  + A+ LF++M    V P+E T+  ++ ACS
Sbjct: 319 EAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 378

Query: 140 MLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
               +   ++  + I    T   +     C  +VD+ G+  ++  AR +   M     V 
Sbjct: 379 HAGLVDECRRYFSCIRRDRTVRPKAEHYAC--MVDLLGRAGELREARDLIRTMPMEPTVG 436

Query: 197 -WTSIIVA---HAQNAQGHEA 213
            W +++ A   H   A G EA
Sbjct: 437 VWQTLLSACRVHKDVAVGREA 457


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 338/578 (58%), Gaps = 8/578 (1%)

Query: 31   AHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
            A  +  +  C ++ SL+   ++H + +K+ F       N L++ Y +      A Q F++
Sbjct: 655  ATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 88   MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
            M +  VVS+TSL+A Y+  G    A+ LF +M    V P+ ++  +V+ AC+    L  G
Sbjct: 715  MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 148  KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            + +H +I        L V ++L+DMY KC  ++ A  VF  +  +++VSW ++I  +++N
Sbjct: 775  RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834

Query: 208  AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  +EAL++F E   Q   RP+   +A ++ AC SL  L  G+  HG ++R+G      V
Sbjct: 835  SLPNEALKLFAEM--QKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHV 892

Query: 268  ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            A+AL+DMY KCGS+ ++  +F+ I    ++T+T MI G   +GLG  ++  F +M   GI
Sbjct: 893  ANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGI 952

Query: 328  KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            KP+++TF  +L+ACSHSGL++EG    +SM  +  + P  +HY C+VD+L RTG L +AY
Sbjct: 953  KPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAY 1012

Query: 388  KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
             L +++ + PD    +WG LL   R+H  V++A + +  + E     A  YV L+N YA 
Sbjct: 1013 NLIETMPIKPDA--TIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAE 1070

Query: 448  AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            A +WE V  LR  + + G+ K PGCSW+E++ +   F + +    +   + SLL  L  K
Sbjct: 1071 AEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIK 1130

Query: 508  MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
            MK  G+   K     ++  D  +E  +  HSE+LA+AFG++++P G TIR+ KNLR+C D
Sbjct: 1131 MKNEGH-SPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDD 1189

Query: 568  CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            CH++ K +S    R+ ++RD NRFHHF++G CSC DFW
Sbjct: 1190 CHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 202/398 (50%), Gaps = 10/398 (2%)

Query: 15  ASSLTRQNKRSSCHTKAH--FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           A  L R +++S     A+   +Q   E K L     VHS I  +G          L+  Y
Sbjct: 437 AVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMY 496

Query: 73  VRLKKTQVARQLFDEMLEPN-VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           V     +  R++FD +L  N V  +  +M+ Y  +G  + ++ LF+KM    +  N +TF
Sbjct: 497 VSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTF 556

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + ++K  + L  +   K+IH  +   GF  YN VV +SL+  Y K  +VD A ++FD +G
Sbjct: 557 SCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV-NSLIATYFKSGEVDSAHKLFDELG 615

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R+VVSW S+I     N   H ALE F +     R   +   L + + ACA++G L  G+
Sbjct: 616 DRDVVSWNSMISGCVMNGFSHSALEFFVQM-LILRVGVDLATLVNSVAACANVGSLSLGR 674

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG  V++      +  + L+DMY+KCG++N + + F ++   +VV++TS+I    + G
Sbjct: 675 ALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREG 734

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
           L   ++ LF EM S+G+ P+  +   VLHAC+    +D+G + + +  RK  +       
Sbjct: 735 LYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG-RDVHNYIRKNNMALCLPVS 793

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
             ++DM  + G ++EAY +   I   P    + W T++
Sbjct: 794 NALMDMYAKCGSMEEAYLVFSQI---PVKDIVSWNTMI 828



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 193/382 (50%), Gaps = 12/382 (3%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           + ++ ECK       +H  + K GF S    +N LI  Y +  +   A +LFDE+ + +V
Sbjct: 566 LGRVGECKR------IHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDV 619

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S+++G +  G    AL  F +ML   V  +  T    + AC+ +  L  G+ +H  
Sbjct: 620 VSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQ 679

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                F   ++  ++L+DMY KC +++ A + F+ MG + VVSWTS+I A+ +     +A
Sbjct: 680 GVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDA 739

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           + +F E   +    P+ + + SV++ACA    L  G+  H  + ++       V++AL+D
Sbjct: 740 IRLFYEMESKGVS-PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMD 798

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCGS+  +  VF++I    +V++ +MI G +K  L   +L LF EM  +  +P+ +T
Sbjct: 799 MYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGIT 857

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
              +L AC     ++ G + +     + G   +      ++DM  + G L  A  L   I
Sbjct: 858 MACLLPACGSLAALEIG-RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMI 916

Query: 394 QVDPDGGPLLWGTLLSASRLHG 415
              P+   + W  ++S   +HG
Sbjct: 917 ---PEKDLITWTVMISGCGMHG 935


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 331/547 (60%), Gaps = 16/547 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I  Y +  +   ARQLFDE    +V ++T++++GYI     + A  LF +M 
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP 303

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCND 178
                 NE ++       +MLA  + G+++    E F      N+   ++++  Y +C  
Sbjct: 304 ER----NEVSWN------AMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGK 353

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  A+ +FD M  R+ VSW ++I  ++Q+   +EAL +F     +   R N+   +S ++
Sbjct: 354 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREG-GRLNRSSFSSALS 412

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +  L  GK  HG +V+ G E    V +AL+ MY KCGS+  ++ +F  ++   +V+
Sbjct: 413 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G G  +L  F  M   G+KP+D T V VL ACSH+GLVD+G Q+  +M 
Sbjct: 473 WNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMT 532

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG+ P+++HY C+VD+LGR G L+EA+ L K++  +PD    +WGTLL ASR+HG  +
Sbjct: 533 QDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAA--IWGTLLGASRVHGNTE 590

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A++++     + +  YV LSN YA +G W +V  LR  M+  G+ K PG SW+EI+
Sbjct: 591 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 650

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++T+ F  G+       E+ + L +L+ +MK+ GYV  KT +V  DVE+E +E +V  HS
Sbjct: 651 NKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYV-SKTSVVLHDVEEEEKERMVRYHS 709

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           ERLA+A+G++ +  G  IR++KNLR+C DCH+  K ++ +  R  ++RD NRFHHF++GS
Sbjct: 710 ERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGS 769

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 770 CSCGDYW 776



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 206/504 (40%), Gaps = 90/504 (17%)

Query: 35  QQLQECKHLISLASVHSEILKSGFLSN-----------------TFTLNHLINCYVRLKK 77
           + L+  K +   +SV    + SG+L N                   + N +I  YVR + 
Sbjct: 77  EALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRN 136

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              AR+LF+ M E +V S+ ++++GY   G    A  +F +M      P +      +  
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRM------PEK----NDVSW 186

Query: 138 CSMLADLITGKQIHTHIETFGFQYN--LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
            ++L+  +   ++      FG + N  LV  + L+  + K   +  AR+ FD M  R+VV
Sbjct: 187 NALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVV 246

Query: 196 SWTSIIVAHAQNAQGHEALEMFRE------FNY--------QSRDRPNQHMLASVINAC- 240
           SW +II  +AQN +  EA ++F E      F +        Q+R       L   +    
Sbjct: 247 SWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERN 306

Query: 241 -ASLGRLVSGKVAHGVVVRSGCEFNDVVA-------SALVDMYAKCGSVNYSDKVFNRIS 292
             S   +++G V  G  V    E  DV+        + ++  YA+CG ++ +  +F+++ 
Sbjct: 307 EVSWNAMLAGYV-QGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP 365

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS---------- 342
               V++ +MI G ++ G    +L LF  M   G + N  +F   L  C+          
Sbjct: 366 KRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQ 425

Query: 343 -HSGLVDEGIQ-------HLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGR 382
            H  LV  G +        L  MY K G I +A              +  ++    R G 
Sbjct: 426 LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGF 485

Query: 383 LDEAYKLAKSIQ---VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA-- 437
            +EA +  +S++   + PD   ++   +LSA    G VD   +  + + +      N+  
Sbjct: 486 GEEALRFFESMKREGLKPDDATMV--AVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543

Query: 438 YVTLSNTYALAGEWENVHSLRSEM 461
           Y  + +    AG  E  H+L   M
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNM 567



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 156/354 (44%), Gaps = 35/354 (9%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           S+    N  I+ Y+R  +   A ++F  M   + VSY ++++GY+  G+ ++A +LF +M
Sbjct: 57  SDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS--SLVDMYGKCN 177
                 P       ++    M+   +  + +    E F       VCS  +++  Y +  
Sbjct: 117 ------PER----DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNG 166

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            VD ARRVFD M  +N VSW +++ A+ QN++  EA  +F           ++   A V 
Sbjct: 167 CVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF----------GSRENWALVS 216

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSV 296
             C   G +   K+          +  DVV+ + ++  YA+ G ++ + ++F+      V
Sbjct: 217 WNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV 276

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
            T+T+M+ G  +  +   + +LF+ M  R    N+V++  +L        V+   +  D 
Sbjct: 277 FTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDV 332

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           M        +   +  ++    + G++ EA  L   +   P   P+ W  +++ 
Sbjct: 333 M-----PCRNVSTWNTMITGYAQCGKISEAKNLFDKM---PKRDPVSWAAMIAG 378



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 29  TKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C  +++L     +H  ++K G+ +  F  N L+  Y +    + A  LF
Sbjct: 403 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 462

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
            EM   ++VS+ +++AGY   G  + AL  F+ M    + P++ T   V+ ACS    + 
Sbjct: 463 KEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 522

Query: 146 TGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
            G+Q  HT  + +G + N    + +VD+ G+   ++ A  +   M
Sbjct: 523 KGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 354/637 (55%), Gaps = 59/637 (9%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           N+RS   +  + +      K +     VH   +++G   + F  N LI+ Y +    + A
Sbjct: 222 NERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENA 281

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM------LGNLVW---------- 125
            ++F+ M   +VVS+ +++AGY   G  + A  LF+ M      L  + W          
Sbjct: 282 VKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR 341

Query: 126 -------------------PNEFTFATVIKACSMLADLITGKQIHTHI---------ETF 157
                              PN  T  +V+ AC+ L     G +IH +            F
Sbjct: 342 GCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDF 401

Query: 158 GFQ-YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEAL 214
           G +  +L+V ++L+DMY KC     AR +FD +    RNVV+WT +I  HAQ    ++AL
Sbjct: 402 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 461

Query: 215 EMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVR-----SGCEFNDVVA 268
           ++F E   +     PN + ++ ++ ACA L  +  GK  H  V+R     S   F   VA
Sbjct: 462 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYF---VA 518

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + L++MY+KCG V+ +  VF+ +S  S +++TSM+ G   +G G  +LD+F++M   G  
Sbjct: 519 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 578

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+D+TF+ VL+ACSH G+VD+G+ + DSM   YG+ P A+HY   +D+L R GRLD+A+K
Sbjct: 579 PDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK 638

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             K + ++P    ++W  LLSA R+H  V++A  A N+L+E N +   +Y  +SN YA A
Sbjct: 639 TVKDMPMEPTA--VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 696

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W++V  +R  MK++GI K PGCSWV+ +  T +F+ G+       ++ +LL  L  ++
Sbjct: 697 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRI 756

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  GYV  +T     DV++E +  ++  HSE+LALA+GL++   G  IRI KNLR+C DC
Sbjct: 757 KAMGYV-PETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDC 815

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H  F  IS IV+ + VVRD +RFHHF+NGSCSCG +W
Sbjct: 816 HSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 217/471 (46%), Gaps = 67/471 (14%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R   R    T  H ++   E       ++ H  I  +GF SN F  N L+  Y R   
Sbjct: 108 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 167

Query: 78  TQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNE---- 128
            + A  +FDE+ +    +V+S+ S+++ ++       AL LF KM  + +    NE    
Sbjct: 168 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 227

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            +   ++ AC  L  +   K++H +    G   ++ V ++L+D Y KC  ++ A +VF++
Sbjct: 228 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 287

Query: 189 MGCRNVVS-----------------------------------WTSIIVAHAQNAQGHEA 213
           M  ++VVS                                   WT++I  ++Q    HEA
Sbjct: 288 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 347

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---------GCEFN 264
           L +FR+  + S   PN   + SV++ACASLG    G   H   +++         G E  
Sbjct: 348 LNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 406

Query: 265 DV-VASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           D+ V +AL+DMY+KC S   +  +F+ I     +VVT+T MI G A+YG    +L LF E
Sbjct: 407 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 466

Query: 322 MISR--GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY---TCVVDM 376
           MIS   G+ PN  T   +L AC+H   +  G Q    + R +    D+  Y    C+++M
Sbjct: 467 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY--DSSAYFVANCLINM 524

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
             + G +D A  +  S+        + W ++++   +HGR   A++  +++
Sbjct: 525 YSKCGDVDTARHVFDSMS---QKSAISWTSMMTGYGMHGRGSEALDIFDKM 572



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 200/453 (44%), Gaps = 68/453 (15%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           +SL ++ SE     F+S       ++  Y+    T  A  + + +     V +  L+  +
Sbjct: 37  VSLPALPSE----PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREH 92

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           I  G+   A+ +  +ML      + FT   V+KAC  L     G   H  I   GF+ N+
Sbjct: 93  IKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNV 152

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +C++LV MY +C  ++ A  +FD +   G  +V+SW SI+ AH +++    AL++F + 
Sbjct: 153 FICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKM 212

Query: 221 NYQSRDRPNQHM-----LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
                ++P         + +++ AC SL  +   K  HG  +R+G   +  V +AL+D Y
Sbjct: 213 TLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAY 272

Query: 276 AKCGSVNYSDKVFNRISNPSV-----------------------------------VTYT 300
           AKCG +  + KVFN +    V                                   VT+T
Sbjct: 273 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWT 332

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-------- 352
           ++I G ++ G    +L++F +MI  G  PN VT + VL AC+  G   +G++        
Sbjct: 333 AVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKN 392

Query: 353 ---HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD---PDGGPLLWGT 406
               LD+ +   G   D   Y  ++DM  +      ++K A+SI  D    +   + W  
Sbjct: 393 CLLTLDNDFG--GEDEDLMVYNALIDMYSKC----RSFKAARSIFDDIPLEERNVVTWTV 446

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVA-NAY 438
           ++     +G  + A++   ++I     VA NAY
Sbjct: 447 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAY 479


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 342/610 (56%), Gaps = 38/610 (6%)

Query: 31  AHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +H + QLQ C    S      +H  I+K+G        N+LIN Y +    Q A  LF++
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLIT 146
           +   + +S+ S++        P + L +F  M   + + P+ + FA ++KAC++L  +  
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GKQ+H          + VV SSLVDMY KC   D  R VFD +  +N +SWT++I  +AQ
Sbjct: 124 GKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 207 NAQGHEALEMFR-------------------------------EFNYQSRDRPNQHMLAS 235
           + +  +A+++F+                               E   +  D  +  +L+S
Sbjct: 184 SGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSS 243

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           +I A A+L  L  GK  H +V+  G E +  V++ALVDMYAKC  V  + K+F R+    
Sbjct: 244 IIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRD 303

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           +V++TS+IVG A++GL   +L L+N M+S G+KPN+VTFVG+++ACSH GLV +G    +
Sbjct: 304 IVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFN 363

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           SM + YGI P  +HYTC++D+L R+G L+EA  L K++   PD     W  LLSA   H 
Sbjct: 364 SMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEAT--WAALLSACNHHR 421

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
              I +  ++ L+    +  + Y+ LSN YA A  WE+V  +R  M    + KEPG S +
Sbjct: 422 NTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCI 481

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
            +  ++  F AG        E+  LL EL+ +MK+RGY+   T  V  D+E + +E  + 
Sbjct: 482 VLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYI-PDTSSVLHDLEQQEKERQLF 540

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595
            HSERLA+A+GL+    G+ + I+KNLR+C DCH V K IS IV+R+ VVRD NR+HHF+
Sbjct: 541 WHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFK 600

Query: 596 NGSCSCGDFW 605
           +G CSC +FW
Sbjct: 601 DGKCSCNNFW 610


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 339/559 (60%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L + +    LI  Y +      AR++FDEM + NVVS+T++++ Y   G 
Sbjct: 112 VHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGF 171

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +ML +   PN FTFAT++ +C       TG+QIH+      ++ ++ V SS
Sbjct: 172 AFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSS 231

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +  A  VF  +  R+VV+ T+II  +AQ     EAL++FR+   +  +  
Sbjct: 232 LLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN-S 290

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    ASV+ A + L  L  GK  H  V+RSG     V+ ++L+DMY+KCG+V Y+ ++F
Sbjct: 291 NSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIF 350

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
           + +   + +++ +M+VG +K+G+ R  L+LF  M     +KP+ +T++ VL  CSH  L 
Sbjct: 351 DSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLE 410

Query: 348 DEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D G++   +M   K GI PD  HY CVVD+LGR GR++EA+   K +   P     +WG+
Sbjct: 411 DMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAA--IWGS 468

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL + R+H  V+I +    +L+E   + A  YV LSN YA AG+WE++ ++R  M+   +
Sbjct: 469 LLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAV 528

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SWVE+    + F+A +    R  EV   ++EL  K KE GYV   + +++ DV+
Sbjct: 529 TKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLY-DVD 587

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSE+LALAFGLI+ P+G TIR++KNLR+C DCH   K +S +  R  ++R
Sbjct: 588 EEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILR 647

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH+   G CSCGD+W
Sbjct: 648 DKNRFHNIVGGVCSCGDYW 666



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 157/313 (50%), Gaps = 7/313 (2%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + T++  C     +  G+++HTH+    +  ++ + + L+ +Y KC+ +  AR +FD M 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC-ASLGRLVSG 249
            +NVVSWT++I A++Q     EAL +F E   +S   PN    A+++ +C  SLG   +G
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEM-LRSDTEPNHFTFATILTSCYGSLG-FETG 210

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  H + ++   E +  V S+L+DMYAK G +  +  VF+ +    VV  T++I G A+ 
Sbjct: 211 RQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQM 270

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           GL   +L LF ++   G+  N VT+  VL A S    ++ G Q + S   + G       
Sbjct: 271 GLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-VHSHVLRSGQYSYVVL 329

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
              ++DM  + G +  A ++  S+   P+   + W  +L     HG     +E    + E
Sbjct: 330 LNSLIDMYSKCGNVCYARRIFDSM---PERTCISWNAMLVGYSKHGMAREVLELFKLMRE 386

Query: 430 SNQQVANAYVTLS 442
            N+   ++   L+
Sbjct: 387 ENKVKPDSITYLA 399


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/560 (38%), Positives = 329/560 (58%), Gaps = 8/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   LK G + + F      + Y +      A  +FDEM + N+ ++ + ++  +   +
Sbjct: 130 IHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRR 189

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A++ F++ L     PN  TF   + AC  +  L  G+Q+H  I   G++ ++ V + 
Sbjct: 190 SLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANG 249

Query: 169 LVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+D YGKC D+  A  VF+ +G R NVVSW S++ A  QN +   A  +F     +    
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF--LQARKEVE 307

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P   M++SV++ACA LG L  G+  H + V++  E N  V SALVDMY KCGS+  +++V
Sbjct: 308 PTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQV 367

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSG 345
           F+ +   ++VT+ +MI G A  G    +L LF EM   S GI+P+ VT + +L  CS  G
Sbjct: 368 FSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVG 427

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            V+ GIQ  +SM   YGI P A+H+ CVVD+LGR+G +D AY+  +++ + P     +WG
Sbjct: 428 AVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTIS--VWG 485

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL A R+HG+ ++   A+ +L E +   +  +V LSN  A AG WE    +R EMK  G
Sbjct: 486 ALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIG 545

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           I K  G SW+ ++++ + F A ++  +R SE+ ++L +L   MKE GYV   T L   D+
Sbjct: 546 IKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVP-DTNLSLFDL 604

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           EDE +   V  HSE++ALAFGLI++P+G+ IRI KNLR+C DCH   K IS IV R+ +V
Sbjct: 605 EDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIV 664

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD +RFH F++G CSC D+W
Sbjct: 665 RDNHRFHRFKDGCCSCKDYW 684



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 198/396 (50%), Gaps = 8/396 (2%)

Query: 48  SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           ++H+ I+++      +F  NHL+N Y +L     A+ +        VV++TSL++G ++ 
Sbjct: 27  TIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHN 86

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
            +   ALL F  M  + V PN+FTF  V KA + +   +TGKQIH      G  Y++ V 
Sbjct: 87  RRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVG 146

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            S  DMY K      A  +FD M  RN+ +W + I    Q+ +  +A+  F+EF      
Sbjct: 147 CSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEF-LCVHG 205

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN     + +NAC  + RL  G+  H  +VR G + +  VA+ L+D Y KCG +  ++ 
Sbjct: 206 EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEM 265

Query: 287 VFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           VFNRI N  +VV++ SM+    +      +  +F +   + ++P D     VL AC+  G
Sbjct: 266 VFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELG 324

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            ++ G + + ++  K  +  +    + +VDM G+ G ++ A ++   +   P+   + W 
Sbjct: 325 GLELG-RSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSEL---PERNLVTWN 380

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            ++      G +D+A+    ++   +  +  +YVTL
Sbjct: 381 AMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTL 416


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 337/558 (60%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS ++K  F+ N F  N L++ Y +  +   AR+LF EM E + +SY  L+      G+
Sbjct: 262 VHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGR 321

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +L LF+++        +F FAT++   +   +L  G+QIH+          ++V +S
Sbjct: 322 VEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNS 381

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC+    A R+F  +  ++ V WT++I  + Q     + L++F E  ++++   
Sbjct: 382 LVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM-HRAKIGA 440

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +    AS++ ACA+L  L  GK  H  ++RSGC  N    SALVDMYAKCGS+  + ++F
Sbjct: 441 DSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMF 500

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   + V++ ++I   A+ G G  +L  F +MI  G++PN V+F+ +L ACSH GLV+
Sbjct: 501 QEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVE 560

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+Q+ +SM + Y + P  +HY  +VDML R+GR DEA KL   +  +PD   ++W ++L
Sbjct: 561 EGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPD--EIMWSSIL 618

Query: 409 SASRLHGRVDIAVEASNQLIE-SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           ++ R+H   ++A++A++QL      + A  YV++SN YA AGEW++V  ++  ++  GI 
Sbjct: 619 NSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIR 678

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K P  SWVEI+ +T+ F A +    +  E+   L ELE++M+E+GY    T     +V++
Sbjct: 679 KVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDST-CALHNVDE 737

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E + E +  HSER+A+AF LIS PKG  I +MKNLR C DCH   K+IS IV R+  VRD
Sbjct: 738 EVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRD 797

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF +GSCSC D+W
Sbjct: 798 SSRFHHFTDGSCSCKDYW 815



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 204/405 (50%), Gaps = 5/405 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +    E + +  +A VH  ++K G+ S     N L++ Y + +   +A  LF  M
Sbjct: 141 TLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHM 200

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
            E + V++ +L+ GY   G    A+ LF KM      P+EFTFA V+ A   + D+  G+
Sbjct: 201 AEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQ 260

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H+ +    F +N+ V ++L+D Y K + +  AR++F  M   + +S+  +I   A N 
Sbjct: 261 QVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNG 320

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +  E+LE+FRE  +   DR  Q   A++++  A+   L  G+  H   + +      +V 
Sbjct: 321 RVEESLELFRELQFTRFDR-RQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVG 379

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++LVDMYAKC     ++++F  +++ S V +T++I G  + GL    L LF EM    I 
Sbjct: 380 NSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIG 439

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            +  T+  +L AC++   +  G Q L S   + G + +    + +VDM  + G + EA +
Sbjct: 440 ADSATYASILRACANLASLTLGKQ-LHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQ 498

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           +    Q  P    + W  L+SA   +G    A+ +  Q+I S  Q
Sbjct: 499 M---FQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQ 540



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 12/334 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N +I  Y++      AR LFD M++ +VV++T L+ GY    +   A  LF  M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            + + P+  T AT++   +    +    Q+H H+   G+   L+VC+SL+D Y K   + 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINA 239
            A  +F  M  ++ V++ +++  +++    H+A+ +F  F  Q    RP++   A+V+ A
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLF--FKMQDLGFRPSEFTFAAVLTA 249

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
              +  +  G+  H  VV+    +N  VA+AL+D Y+K   +  + K+F  +     ++Y
Sbjct: 250 GIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISY 309

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
             +I   A  G    SL+LF E+           F  +L   ++S  ++ G Q       
Sbjct: 310 NVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQ-----IH 364

Query: 360 KYGIIPDAKHYTCV----VDMLGRTGRLDEAYKL 389
              I+ DA     V    VDM  +  +  EA ++
Sbjct: 365 SQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRI 398


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 354/637 (55%), Gaps = 59/637 (9%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           N+RS   +  + +      K +     VH   +++G   + F  N LI+ Y +    + A
Sbjct: 115 NERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENA 174

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM------LGNLVW---------- 125
            ++F+ M   +VVS+ +++AGY   G  + A  LF+ M      L  + W          
Sbjct: 175 VKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR 234

Query: 126 -------------------PNEFTFATVIKACSMLADLITGKQIHTHI---------ETF 157
                              PN  T  +V+ AC+ L     G +IH +            F
Sbjct: 235 GCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDF 294

Query: 158 GFQ-YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEAL 214
           G +  +L+V ++L+DMY KC     AR +FD +    RNVV+WT +I  HAQ    ++AL
Sbjct: 295 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 354

Query: 215 EMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVR-----SGCEFNDVVA 268
           ++F E   +     PN + ++ ++ ACA L  +  GK  H  V+R     S   F   VA
Sbjct: 355 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYF---VA 411

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + L++MY+KCG V+ +  VF+ +S  S +++TSM+ G   +G G  +LD+F++M   G  
Sbjct: 412 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 471

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+D+TF+ VL+ACSH G+VD+G+ + DSM   YG+ P A+HY   +D+L R GRLD+A+K
Sbjct: 472 PDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK 531

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             K + ++P    ++W  LLSA R+H  V++A  A N+L+E N +   +Y  +SN YA A
Sbjct: 532 TVKDMPMEPTA--VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 589

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W++V  +R  MK++GI K PGCSWV+ +  T +F+ G+       ++ +LL  L  ++
Sbjct: 590 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRI 649

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  GYV  +T     DV++E +  ++  HSE+LALA+GL++   G  IRI KNLR+C DC
Sbjct: 650 KAMGYV-PETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDC 708

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H  F  IS IV+ + VVRD +RFHHF+NGSCSCG +W
Sbjct: 709 HSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 217/471 (46%), Gaps = 67/471 (14%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R   R    T  H ++   E       ++ H  I  +GF SN F  N L+  Y R   
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 78  TQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNE---- 128
            + A  +FDE+ +    +V+S+ S+++ ++       AL LF KM  + +    NE    
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            +   ++ AC  L  +   K++H +    G   ++ V ++L+D Y KC  ++ A +VF++
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 189 MGCRNVVS-----------------------------------WTSIIVAHAQNAQGHEA 213
           M  ++VVS                                   WT++I  ++Q    HEA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---------GCEFN 264
           L +FR+  + S   PN   + SV++ACASLG    G   H   +++         G E  
Sbjct: 241 LNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 265 DV-VASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           D+ V +AL+DMY+KC S   +  +F+ I     +VVT+T MI G A+YG    +L LF E
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 322 MISR--GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY---TCVVDM 376
           MIS   G+ PN  T   +L AC+H   +  G Q    + R +    D+  Y    C+++M
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY--DSSAYFVANCLINM 417

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
             + G +D A  +  S+        + W ++++   +HGR   A++  +++
Sbjct: 418 YSKCGDVDTARHVFDSMS---QKSAISWTSMMTGYGMHGRGSEALDIFDKM 465



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 167/371 (45%), Gaps = 64/371 (17%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + FT   V+KAC  L     G   H  I   GF+ N+ +C++LV MY +C  ++ A  +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 187 DLM---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-----LASVIN 238
           D +   G  +V+SW SI+ AH +++    AL++F +      ++P         + +++ 
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV-- 296
           AC SL  +   K  HG  +R+G   +  V +AL+D YAKCG +  + KVFN +    V  
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 297 ---------------------------------VTYTSMIVGAAKYGLGRFSLDLFNEMI 323
                                            VT+T++I G ++ G    +L++F +MI
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQ-----------HLDSMYRKYGIIPDAKHYTC 372
             G  PN VT + VL AC+  G   +G++            LD+ +   G   D   Y  
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG--GEDEDLMVYNA 306

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVD---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
           ++DM  +      ++K A+SI  D    +   + W  ++     +G  + A++   ++I 
Sbjct: 307 LIDMYSKC----RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS 362

Query: 430 SNQQVA-NAYV 439
               VA NAY 
Sbjct: 363 EPYGVAPNAYT 373


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/568 (36%), Positives = 341/568 (60%), Gaps = 5/568 (0%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E K L    ++H   ++  F +       L++ Y + +    AR++FD M   N VS+++
Sbjct: 222 EAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 99  LMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           ++ GY+     + AL LF +M L + + P   T  +V++AC+ L DL  G+++H +I   
Sbjct: 282 MIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL 341

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G   ++++ ++L+ MY KC  +D A R FD M  ++ VS+++I+    QN     AL +F
Sbjct: 342 GSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           R       D P+   +  V+ AC+ L  L  G  +HG ++  G   + ++ +AL+DMY+K
Sbjct: 402 RMMQLSGID-PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSK 460

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG ++++ +VFNR+    +V++ +MI+G   +GLG  +L LF+++++ G+KP+D+TF+ +
Sbjct: 461 CGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICL 520

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L +CSHSGLV EG    D+M R + I+P  +H  C+VD+LGR G +DEA+   +++  +P
Sbjct: 521 LSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP 580

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           D    +W  LLSA R+H  +++  E S ++     +    +V LSN Y+ AG W++   +
Sbjct: 581 D--VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI 638

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R   K  G+ K PGCSW+EI    +AF  G+    + S++   L EL  +MK  GY   +
Sbjct: 639 RITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGY-QAE 697

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
              VF DVE+E +E+I+  HSE+LA+AFG++++  G  I + KNLR+C DCH   K ++ 
Sbjct: 698 CSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTL 757

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I +R+  VRD NRFHHF+NG+C+CGDFW
Sbjct: 758 ITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 184/359 (51%), Gaps = 3/359 (0%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H ++   + K L     +H   LK+   +++  L+ L   Y+   +  +AR+LFDE+  P
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +V+ +  ++  Y   G    A+ L+  ML   V PN++T+  V+KACS L  +  G +IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           +H + FG + ++ VC++LVD Y KC  +  A+R+F  M  R+VV+W ++I   +      
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +A+++  +   +    PN   +  V+        L  GK  HG  VR   +   VV + L
Sbjct: 193 DAVQLIMQMQEEGI-CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPN 330
           +DMYAKC  + Y+ K+F+ +   + V++++MI G       + +L+LF++MI +  + P 
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPT 311

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            VT   VL AC+    +  G + L     K G + D      ++ M  + G +D+A + 
Sbjct: 312 PVTLGSVLRACAKLTDLSRG-RKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRF 369



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 175/354 (49%), Gaps = 6/354 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L+++     +HS     G  S+ F    L++ Y +      A++LF  M   +V
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++ +++AG    G    A+ L  +M    + PN  T   V+        L  GK +H +
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                F   +VV + L+DMY KC  +  AR++FD+MG RN VSW+++I  +  +    EA
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEA 295

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+F +   +    P    L SV+ ACA L  L  G+  H  +++ G   + ++ + L+ 
Sbjct: 296 LELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLS 355

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCG ++ + + F+ ++    V++++++ G  + G    +L +F  M   GI P+  T
Sbjct: 356 MYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTT 415

Query: 334 FVGVLHACSHSGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            +GVL ACSH   +  G   H   + R  G   D      ++DM  + G++  A
Sbjct: 416 MLGVLPACSHLAALQHGFCSHGYLIVR--GFATDTLICNALIDMYSKCGKISFA 467



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 4/194 (2%)

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           ++ AC     L   K  H   +++    +  V   L  +Y  C  V  + ++F+ I NPS
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           V+ +  +I   A  G    ++DL++ M+  G++PN  T+  VL ACS    +++G++ + 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           S  + +G+  D    T +VD   + G L EA +L  S+        + W  +++   L+G
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS---HRDVVAWNAMIAGCSLYG 189

Query: 416 RVDIAVEASNQLIE 429
             D AV+   Q+ E
Sbjct: 190 LCDDAVQLIMQMQE 203


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 341/571 (59%), Gaps = 5/571 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLI-NCYV-RLKKTQVARQLFDEMLEPNVV 94
           L+ CK +     VH+ ILK G   ++F  ++L+  C + R    + A  +F ++ EP   
Sbjct: 37  LKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSF 96

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            Y +++ G +N    + ALLL+ +ML   + P+ FT+  V+KACS+L  L  G QIH H+
Sbjct: 97  EYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHV 156

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              G + ++ V + L++MYGKC  ++ A  VF+ M  ++V SW+SII AHA     HE L
Sbjct: 157 FKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECL 216

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
            +  + + + R R  + +L S ++AC  LG    G+  HG+++R+  E N  V ++L+DM
Sbjct: 217 MLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDM 276

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y K GS+     VF  ++  +  +YT +I G A +G GR +L +F++M+  G+ P+DV +
Sbjct: 277 YVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVY 336

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           VGVL ACSH+GLV+EG+Q  + +  ++ I P  +HY C+VD++GR G L  AY L KS+ 
Sbjct: 337 VGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMP 396

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
           + P+   ++W +LLSA ++H  ++I   A+  + + NQ     Y+ L+N YA A +W +V
Sbjct: 397 IKPND--VVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADV 454

Query: 455 HSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYV 514
             +R+EM    + + PG S VE     Y F + +    +   +  +++++E ++K  GY 
Sbjct: 455 ARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYT 514

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
              +  V +DV+++ + + +  HS++LA+AF LI   +G  IRI +N+RMC DCH   K 
Sbjct: 515 PDMSQ-VLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKF 573

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS I ER+  VRD NRFHHF++G+CSC D+W
Sbjct: 574 ISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 349/594 (58%), Gaps = 8/594 (1%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           A + T+ +K  + +T+ + I  + +C  L  L  + +  +KS     +F    +  C   
Sbjct: 15  AETFTKHSKIDTVNTQ-NPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTES 73

Query: 75  LKKTQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
             ++ +  AR LF+ M EP++V + S+  GY     P     LF ++L + + P+ +TF 
Sbjct: 74  PTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFP 133

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++KAC++   L  G+Q+H      G   N+ VC +L++MY +C DVD AR VFD +   
Sbjct: 134 SLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEP 193

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            VV + ++I  +A+  + +EAL +FRE   +   +PN+  L SV+++CA LG L  GK  
Sbjct: 194 CVVCYNAMITGYARRNRPNEALSLFREMQGKYL-KPNEITLLSVLSSCALLGSLDLGKWI 252

Query: 253 HGVVVR-SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
           H    + S C++  V  +AL+DM+AKCGS++ +  +F ++       +++MIV  A +G 
Sbjct: 253 HKYAKKHSFCKYVKV-NTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
              S+ +F  M S  ++P+++TF+G+L+ACSH+G V+EG ++   M  K+GI+P  KHY 
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            +VD+L   G L++AY+    + + P   P+LW  LL+A   H  +D+A + S ++ E +
Sbjct: 372 SMVDLLSXAGNLEDAYEFIDKLPISP--TPMLWRILLAACSSHNNLDLAEKVSERIFELD 429

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
                 YV LSN YA   +WE V SLR  MK     K PGCS +E+ +  + F++G+ + 
Sbjct: 430 DSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVK 489

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
              +++   L E+ +++K  GYV   + +V  ++ D+ +E  +  HSE+LA+ FGL++ P
Sbjct: 490 SATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTP 549

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            G TIR++KNLR+CRDCH+  KLIS I  R  V RDV RFHHF +G CSCGDFW
Sbjct: 550 PGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 318/557 (57%), Gaps = 5/557 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H+ +  S F  + F  N LI+ Y +      AR++FD M   ++ S+TSL+AGY    
Sbjct: 85  AIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQND 144

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            P  AL L   ML     PN FTFA+++KA    A    G+QIH     + +  ++ V S
Sbjct: 145 MPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGS 204

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G   L MF E      + 
Sbjct: 205 ALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFE- 263

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
                 +SV +A A +G L  GK  H  +++SG   +  V + ++DMYAK GS+  + KV
Sbjct: 264 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 323

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+R+    VVT+ SM+   A+YGLGR ++  F EM   G+  N +TF+ +L ACSH GLV
Sbjct: 324 FDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 383

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG Q+ D M ++Y + P+  HY  VVD+LGR G L++A      + + P     +WG L
Sbjct: 384 KEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAA--VWGAL 440

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L + R+H    I   A++ + E +       V L N YA  G+W+    +R  MK TG+ 
Sbjct: 441 LGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVK 500

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEP CSWVEI +  + F A +    R  E+     E+  ++++ GYV   T  V + V++
Sbjct: 501 KEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVP-NTDYVLLHVDE 559

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + R+  +  HSE++ALAF LI++P G TIRIMKN+R+C DCH  F+ IS + +R+ VVRD
Sbjct: 560 QERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRD 619

Query: 588 VNRFHHFRNGSCSCGDF 604
            NRFHHF +GSCSCGD+
Sbjct: 620 TNRFHHFSSGSCSCGDY 636



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 5/285 (1%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + ++I AC+    L   + IH H+    F  ++ + +SL+ +Y KC  V  ARRVFD M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R++ SWTS+I  +AQN    EAL +      + R +PN    AS++ A  +      G+
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGM-LRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H + V+     +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G A+ G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
            G  +L +F EM   G +    T+  V  A +  G +++G + + +   K G    A   
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFVG 304

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
             ++DM  ++G + +A K+   +        + W ++L+A   +G
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVD---KKDVVTWNSMLTAFAQYG 346


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/548 (40%), Positives = 333/548 (60%), Gaps = 8/548 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           +SN F  + L++ YV+  KT+ A+ + D + E +VV  T+L+ GY   G+   A+  FQ 
Sbjct: 198 VSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQS 257

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML   V PNE+T+A+V+ +C  L D+  GK IH  +   GF+  L   +SL+ MY +C+ 
Sbjct: 258 MLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSL 317

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD + RVF  +   N VSWTS+I    QN +   AL  FR+    S  +PN   L+S + 
Sbjct: 318 VDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSI-KPNSFTLSSALR 376

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            C++L     G+  HG+V + G + +    S L+D+Y KCG  + +  VF+ +S   V++
Sbjct: 377 GCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVIS 436

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
             +MI   A+ G GR +LDLF  MI+ G++PNDVT + VL AC++S LV+EG +  DS +
Sbjct: 437 LNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDS-F 495

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           RK  I+    HY C+VD+LGR GRL+EA  L   + ++PD   +LW TLLSA ++H +V+
Sbjct: 496 RKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEV-INPD--LVLWRTLLSACKVHRKVE 552

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A   + +++E         + +SN YA  G+W  V  ++S+MK   + K P  SWVEI 
Sbjct: 553 MAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEIN 612

Query: 479 DQTYAFYAGNALFERGSE-VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
            +T+ F AG+      SE +L  L EL +K K+ GYV  K+  VF D+E+ A+E  +  H
Sbjct: 613 KETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKS-CVFQDMEETAKERSLHQH 671

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AF +     G +IRI+KNLR+C DCH   K++S +++R+ + RD  RFHHFR+G
Sbjct: 672 SEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDG 730

Query: 598 SCSCGDFW 605
           SCSCGD+W
Sbjct: 731 SCSCGDYW 738



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 202/362 (55%), Gaps = 7/362 (1%)

Query: 29  TKAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T  +F Q L++C   + +  + ++ + +LKSGF +   + + L++  ++      ARQ+F
Sbjct: 64  TTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAE-ISGSKLVDASLKCGDIDYARQVF 122

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D M E ++V++ SL+A  I   + + A+ +++ M+ N V P+E+T ++V KA S L+   
Sbjct: 123 DGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEK 182

Query: 146 TGKQIHTHIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
             ++ H      G +  N+ V S+LVDMY K      A+ V D +  ++VV  T++IV +
Sbjct: 183 EAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGY 242

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           +Q  +  EA++ F+    + + +PN++  ASV+ +C +L  + +GK+ HG++V+SG E  
Sbjct: 243 SQKGEDTEAVKAFQSMLVE-KVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESA 301

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
               ++L+ MY +C  V+ S +VF  I  P+ V++TS+I G  + G    +L  F +M+ 
Sbjct: 302 LASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMR 361

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
             IKPN  T    L  CS+  + +EG Q +  +  KYG   D    + ++D+ G+ G  D
Sbjct: 362 DSIKPNSFTLSSALRGCSNLAMFEEGRQ-IHGIVTKYGFDRDKYAGSGLIDLYGKCGCSD 420

Query: 385 EA 386
            A
Sbjct: 421 MA 422



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 141/267 (52%), Gaps = 25/267 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++KSGF S   +   L+  Y+R      + ++F  +  PN VS+TSL++G +  G+
Sbjct: 289 IHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGR 348

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            ++AL+ F+KM+ + + PN FT ++ ++ CS LA    G+QIH  +  +GF  +    S 
Sbjct: 349 EEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSG 408

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF-REFNYQSRDR 227
           L+D+YGKC   D AR VFD +   +V+S  ++I ++AQN  G EAL++F R  N     +
Sbjct: 409 LIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGL--Q 466

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-----------SALVDMYA 276
           PN   + SV+ AC            +  +V  GCE  D              + +VD+  
Sbjct: 467 PNDVTVLSVLLAC-----------NNSRLVEEGCELFDSFRKDKIMLTNDHYACMVDLLG 515

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMI 303
           + G +  ++ +   + NP +V + +++
Sbjct: 516 RAGRLEEAEMLTTEVINPDLVLWRTLL 542



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 151/292 (51%), Gaps = 7/292 (2%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F+ +++ C     +   K I  H+   GF    +  S LVD   KC D+D AR+VFD M 
Sbjct: 68  FSQLLRQCIDERSISGIKTIQAHMLKSGFPAE-ISGSKLVDASLKCGDIDYARQVFDGMS 126

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R++V+W S+I    ++ +  EA+EM+R     +   P+++ L+SV  A + L      +
Sbjct: 127 ERHIVTWNSLIAYLIKHRRSKEAVEMYR-LMITNNVLPDEYTLSSVFKAFSDLSLEKEAQ 185

Query: 251 VAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
            +HG+ V  G E ++V V SALVDMY K G    +  V +R+    VV  T++IVG ++ 
Sbjct: 186 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQK 245

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G    ++  F  M+   ++PN+ T+  VL +C +   +  G + +  +  K G       
Sbjct: 246 GEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNG-KLIHGLMVKSGFESALAS 304

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            T ++ M  R   +D++ ++ K I+  P+   + W +L+S    +GR ++A+
Sbjct: 305 QTSLLTMYLRCSLVDDSLRVFKCIEY-PN--QVSWTSLISGLVQNGREEMAL 353


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 332/572 (58%), Gaps = 7/572 (1%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           + +LQE +  + +  + S   K G  S+ + L  LI+ Y +  K+   R LFD++ +P++
Sbjct: 224 VAELQEYRLGMGIQCLAS---KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDL 280

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +SY ++++GY    + + A+ LF+++L +    N  T   +I        L   + I   
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G      V ++L  +Y + N+V  AR++FD    +++ SW ++I  + QN     A
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           + +F+E   Q    PN   + S+++ACA LG L  GK  HG++     E N  V++ALVD
Sbjct: 401 ISLFQEMMPQLS--PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVD 458

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCGS+  + ++F+ + + +VVT+ +MI G   +G G+ +L LF EM+  GI P  VT
Sbjct: 459 MYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVT 518

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ +L+ACSHSGLV EG +   SM   YG  P ++HY C+VD+LGR G+L  A +  + +
Sbjct: 519 FLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P  GP +WG LL A  +H   ++A  AS +L + + +    YV LSN Y+    +  
Sbjct: 579 PLEP--GPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPK 636

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
             S+R  +K+  + K PGC+ +EI DQ Y F +G+    + + +  +L +L  KM+E GY
Sbjct: 637 AASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGY 696

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
                     DVEDE +E +V +HSE+LA+AFGLIS   G  IRI+KNLR+C DCH   K
Sbjct: 697 QAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATK 756

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS I ER  VVRD NRFHHF+NG CSCGD+W
Sbjct: 757 FISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 183/382 (47%), Gaps = 6/382 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +  G  SN F  + +++ Y +  + ++AR++FD M E + V + ++++G+     
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + ++ +F  ML   +  +  T ATV+ A + L +   G  I       G   ++ V + 
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTG 254

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +Y KC      R +FD +   +++S+ ++I  +  N +   A+ +FRE    S  R 
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL-LASGQRV 313

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L  +I        L   ++   + ++ G      V++AL  +Y +   V ++ ++F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +     S+ ++ +MI G  + GL   ++ LF EM+ + + PN VT   +L AC+  G + 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALS 432

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G + +  + +   +  +    T +VDM  + G + EA +L     +  D   + W  ++
Sbjct: 433 IG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL---FDLMVDKNVVTWNAMI 488

Query: 409 SASRLHGRVDIAVEASNQLIES 430
           +   LHG    A++   ++++S
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQS 510



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 209/459 (45%), Gaps = 32/459 (6%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           S+   +  F+  L     L  L  + ++++  G   +  ++  L + +  L      RQL
Sbjct: 9   SAIRGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQL 68

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNEFTFATVIKACSMLA 142
           F+++ +P++  +  L+ G+ + G P+ ++ L+  +    NL  P+ FT+A  I A S L 
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNL-RPDNFTYAFAISAASRLE 127

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           D   G  +H H    G   NL V S++VD+Y K    + AR+VFD+M  R+ V W ++I 
Sbjct: 128 DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMIS 187

Query: 203 AHAQNAQGHEALEMFRE-----FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
             ++N+   +++ +F +      ++ S        LA+V+ A A L     G     +  
Sbjct: 188 GFSRNSYFEDSIRVFVDMLDVGLSFDST------TLATVLTAVAELQEYRLGMGIQCLAS 241

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           + G   +  V + L+ +Y+KCG       +F++I  P +++Y +MI G         ++ 
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 318 LFNEMISRGIKPNDVTFVGVLH---ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           LF E+++ G + N  T VG++      +H  L    IQ+L     K GII      T + 
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQL-SRLIQNLS---LKIGIILQPSVSTALT 357

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV----EASNQLIES 430
            +  R   +  A +L       P+     W  ++S    +G  D A+    E   QL  +
Sbjct: 358 TVYCRLNEVQFARQL---FDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPN 414

Query: 431 NQQVANAYVTLSNTYALA-GEWENVHSL-RSEMKRTGIH 467
              V +     +   AL+ G+W  VH L +SE   + ++
Sbjct: 415 PVTVTSILSACAQLGALSIGKW--VHGLIKSERLESNVY 451


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 333/569 (58%), Gaps = 11/569 (1%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           +C  L+    V  E+ +    S     N ++N Y  +   + AR LFDEM E +  S+T+
Sbjct: 134 KCGSLVDARKVFDEMPERDVCS----WNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTA 189

Query: 99  LMAGYINMGQPQIALLLFQKM--LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           ++ GY+   QP+ AL+L+  M  + N   PN FT ++ + A + +  +  GK+IH HI  
Sbjct: 190 MVTGYVKKDQPEEALVLYSLMQRVPNSK-PNIFTVSSAVAAAAAIKCIRRGKEIHGHIVR 248

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G   + V+ SSL+DMYGKC  +D AR +FD +  ++VVSWTS+I  + ++++  E   +
Sbjct: 249 AGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSL 308

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F E    S +RPN++  + V+NACA L     G+  HG + R G +     +S+L+DMY 
Sbjct: 309 FSEL-IGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYT 367

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG++  +  V +    P +V+ TS+I G A+ G    +L  F+ ++  G KP+ VTFV 
Sbjct: 368 KCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVN 427

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL AC+H+GLV++G++   S+  K+ +   + HYTC+VD+L R+GR ++   +   + + 
Sbjct: 428 VLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMK 487

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           P     LW ++L     +G +D+A EA+ +L +   +    YVT++N YA AG+WE    
Sbjct: 488 P--SKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGK 545

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG 516
           +R  M+  GI K+PG SW EI+ + + F A +      ++++  L EL +KMKE GYV  
Sbjct: 546 MRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPA 605

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
            T LV  DVEDE +EE +  HSE+LA+AF ++S  +G  I++ KNLR C DCH   K IS
Sbjct: 606 -TSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFIS 664

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            I +R   +RD  RFH F NG CSC D+W
Sbjct: 665 KITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 216/490 (44%), Gaps = 89/490 (18%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L++ H  I KS  LS+++            +K    ++ FD  LE   V    L     N
Sbjct: 10  LSTFHGLIFKSNLLSSSYAS----------QKRFSDKKFFDSKLEDGGVVVERLCRA--N 57

Query: 106 MGQPQIALLLFQKML-------GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
                I +L  QK+L       G    P   T+  +I+ CS    L  GK++H HI T G
Sbjct: 58  RFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSG 117

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F   +V+ + ++ MY KC  +  AR+VFD M  R+V SW  ++  +A+     EA  +F 
Sbjct: 118 FVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFD 177

Query: 219 EF-------------NYQSRDRPNQ-----HMLASVINACASLGR-------------LV 247
           E               Y  +D+P +      ++  V N+  ++               + 
Sbjct: 178 EMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIR 237

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK  HG +VR+G + ++V+ S+L+DMY KCG ++ +  +F++I +  VV++TSMI    
Sbjct: 238 RGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYF 297

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ--------------- 352
           K    R    LF+E+I    +PN+ TF GVL+AC+     + G Q               
Sbjct: 298 KSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSF 357

Query: 353 ---HLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYK----LAKSI 393
               L  MY K G I  A+H             T ++    + G+ DEA K    L KS 
Sbjct: 358 ASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKS- 416

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ--QVANAYVTLSNTYALAGEW 451
              PD   + +  +LSA    G V+  +E    + E +     ++ Y  L +  A +G +
Sbjct: 417 GTKPDH--VTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRF 474

Query: 452 ENVHSLRSEM 461
           E + S+ SEM
Sbjct: 475 EQLKSVLSEM 484


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/540 (38%), Positives = 326/540 (60%), Gaps = 4/540 (0%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N +++ Y    + +   +LF+EM   +V+S+TS++ G    G+ + AL +F+KML + V 
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P   TFA V+ AC+   +   G Q+H H+   G  ++  +  SL+  Y  C  ++ A ++
Sbjct: 200 PTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+    +NVV WT+++ A+  N +  +AL +F +        PNQ   +  + AC  L  
Sbjct: 260 FNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGA-LPNQSTFSITLKACCGLEA 318

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  GK  H + ++ G E +  V ++LV MY +CG+VN +  VF  I+   +V++ S+IVG
Sbjct: 319 LDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVG 378

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
           +A++G G ++L  FN+MI RG+ PN++TF G+L ACS SG++ +G    + + R    + 
Sbjct: 379 SAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVL 438

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C+VD+LGR G+LDEA +L + + V  +   ++W  LLSA R+H  +++A  A+ 
Sbjct: 439 RPQHYACMVDILGRCGKLDEAEELVRYMPVKANS--MIWLALLSACRVHSNLEVAERAAK 496

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            +++     ++AYV LSN YA AG W +V  +R +MK+ G+ K+PG SWV +R + + F 
Sbjct: 497 HILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFL 556

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           + +        +   L  L +K+KE GYV  +      DVEDE +EE++  HSERLA+AF
Sbjct: 557 SADRSHPLSERIYEKLDWLGKKLKEFGYVPDQK-FALHDVEDEQKEEMLSFHSERLAIAF 615

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GL+S  +G TI +MKNLR+C DCH V KL+S IV R  VVRD  RFHHF+NG CSC D+W
Sbjct: 616 GLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 5/263 (1%)

Query: 29  TKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T + F   L  C + +       VH  ++K G   + F    LI  Y    K + A ++F
Sbjct: 201 TWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIF 260

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           +E L  NVV +T+L+  Y+   + Q AL +F  M      PN+ TF+  +KAC  L  L 
Sbjct: 261 NETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALD 320

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            GK+IHT     G + ++ V +SLV MY +C +V+ A  VF  +  +++VSW SIIV  A
Sbjct: 321 KGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSA 380

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE-FN 264
           Q+  G  AL  F +   +  D PN+     +++AC+  G L+ G+     + R       
Sbjct: 381 QHGFGLWALIFFNQMIRRGVD-PNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLR 439

Query: 265 DVVASALVDMYAKCGSVNYSDKV 287
               + +VD+  +CG ++ ++++
Sbjct: 440 PQHYACMVDILGRCGKLDEAEEL 462



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 184/401 (45%), Gaps = 48/401 (11%)

Query: 59  LSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           LS T +L NHL N     ++   AR +FD++  PN+  YT ++AGY    +   AL LF 
Sbjct: 13  LSYTTSLANHLKN-----QRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFD 67

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +M    V     ++ ++IK C    +L    ++   +     + N++  +++V+ Y K  
Sbjct: 68  RMSVRDV----VSWNSMIKGCLDCGNLGMATRLFDEMP----EKNVISWTTMVNGYLKFG 119

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-----------------F 220
            V+ A+R+F  M  ++V +W +++  + +N +  E + +F E                  
Sbjct: 120 RVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDL 179

Query: 221 NYQSRD-------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
           N +S +              P     A V++ACA+      G   HG VV+ GC F++ +
Sbjct: 180 NGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFI 239

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           + +L+  YA C  + ++ K+FN     +VV +T+++         + +L +F +M   G 
Sbjct: 240 SVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGA 299

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            PN  TF   L AC     +D+G + + +M  K G+  D      +V M    G ++ A 
Sbjct: 300 LPNQSTFSITLKACCGLEALDKG-KEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAV 358

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            + ++I    +   + W +++  S  HG    A+   NQ+I
Sbjct: 359 AVFRNIN---EKDIVSWNSIIVGSAQHGFGLWALIFFNQMI 396


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 332/572 (58%), Gaps = 7/572 (1%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           + +LQE +  + +  + S   K G  S+ + L  LI+ Y +  K+   R LFD++ +P++
Sbjct: 224 VAELQEYRLGMGIQCLAS---KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDL 280

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +SY ++++GY    + + A+ LF+++L +    N  T   +I        L   + I   
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G      V ++L  +Y + N+V  AR++FD    +++ SW ++I  + QN     A
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           + +F+E   Q    PN   + S+++ACA LG L  GK  HG++     E N  V++ALVD
Sbjct: 401 ISLFQEMMPQLS--PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVD 458

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCGS+  + ++F+ + + +VVT+ +MI G   +G G+ +L LF EM+  GI P  VT
Sbjct: 459 MYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVT 518

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ +L+ACSHSGLV EG +   SM   YG  P ++HY C+VD+LGR G+L  A +  + +
Sbjct: 519 FLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P  GP +WG LL A  +H   ++A  AS +L + + +    YV LSN Y+    +  
Sbjct: 579 PLEP--GPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPK 636

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
             S+R  +K+  + K PGC+ +EI DQ Y F +G+    + + +  +L +L  KM+E GY
Sbjct: 637 AASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGY 696

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
                     DVEDE +E +V +HSE+LA+AFGLIS   G  IRI+KNLR+C DCH   K
Sbjct: 697 QAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATK 756

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS I ER  VVRD NRFHHF+NG CSCGD+W
Sbjct: 757 FISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 183/382 (47%), Gaps = 6/382 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +  G  SN F  + +++ Y +  + ++AR++FD M E + V + ++++G+     
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + ++ +F  ML   +  +  T ATV+ A + L +   G  I       G   ++ V + 
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTG 254

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +Y KC      R +FD +   +++S+ ++I  +  N +   A+ +FRE    S  R 
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL-LASGQRV 313

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L  +I        L   ++   + ++ G      V++AL  +Y +   V ++ ++F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +     S+ ++ +MI G  + GL   ++ LF EM+ + + PN VT   +L AC+  G + 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALS 432

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G + +  + +   +  +    T +VDM  + G + EA +L     +  D   + W  ++
Sbjct: 433 IG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL---FDLMVDKNVVTWNAMI 488

Query: 409 SASRLHGRVDIAVEASNQLIES 430
           +   LHG    A++   ++++S
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQS 510



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 208/458 (45%), Gaps = 30/458 (6%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           S+   +  F+  L     L  L  + ++++  G   +  ++  L + +  L      RQL
Sbjct: 9   SAIRGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQL 68

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLAD 143
           F+++ +P++  +  L+ G+ + G P+ ++ L+  +     + P+ FT+A  I A S L D
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLED 128

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
              G  +H H    G   NL V S++VD+Y K    + AR+VFD+M  R+ V W ++I  
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 204 HAQNAQGHEALEMFRE-----FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
            ++N+   +++ +F +      ++ S        LA+V+ A A L     G     +  +
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDST------TLATVLTAVAELQEYRLGMGIQCLASK 242

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   +  V + L+ +Y+KCG       +F++I  P +++Y +MI G         ++ L
Sbjct: 243 KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTL 302

Query: 319 FNEMISRGIKPNDVTFVGVLH---ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           F E+++ G + N  T VG++      +H  L    IQ+L     K GII      T +  
Sbjct: 303 FRELLASGQRVNSSTLVGLIPVYLPFNHLQL-SRLIQNLS---LKIGIILQPSVSTALTT 358

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV----EASNQLIESN 431
           +  R   +  A +L       P+     W  ++S    +G  D A+    E   QL  + 
Sbjct: 359 VYCRLNEVQFARQL---FDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNP 415

Query: 432 QQVANAYVTLSNTYALA-GEWENVHSL-RSEMKRTGIH 467
             V +     +   AL+ G+W  VH L +SE   + ++
Sbjct: 416 VTVTSILSACAQLGALSIGKW--VHGLIKSERLESNVY 451


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/637 (35%), Positives = 357/637 (56%), Gaps = 57/637 (8%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK---- 77
           N+RS   +  + +      K L  +  +HS  +++G  ++ F  N LI+ Y +       
Sbjct: 254 NERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDA 313

Query: 78  ----------------------TQ-----VARQLFDEMLEPN----VVSYTSLMAGYINM 106
                                 TQ      A +LF+ M + N    V+++++++AGY   
Sbjct: 314 VKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQR 373

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH------------I 154
           G  Q AL  FQ+M+ +   PN  T  +++ AC+ L  L  G +IH +             
Sbjct: 374 GCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDF 433

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHE 212
              G   +L+V ++L+DMY KC     AR +FD +  R  NVV+WT +I  +AQ    ++
Sbjct: 434 GGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSND 493

Query: 213 ALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND---VVA 268
           AL++F E   +     PN + ++ ++ ACA L  L  GK  H  V R   E+      VA
Sbjct: 494 ALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHH-EYEPSVYFVA 552

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + L+DMY+KCG V+ +  VF+ +   + V++TSM+ G   +G G+ +LD+F++M   G  
Sbjct: 553 NCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV 612

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+D++F+ +L+ACSHSG+VD+G+ + D M R Y ++  A+HY CV+D+L R GRLD+A+K
Sbjct: 613 PDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWK 672

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + ++P    ++W  LLSA R+H  V++A  A N+L+    +   +Y  +SN YA A
Sbjct: 673 TIQEMPMEPSA--VIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANA 730

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
             W++V  +R  MK++GI K PGCSWV+ +  T +F+ G+       E+ SLL  L  ++
Sbjct: 731 RRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRI 790

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  GYV  +T     DV+DE +  ++  HSE+LALA+GL++   G  IRI KNLR+C DC
Sbjct: 791 KVMGYV-PETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDC 849

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H  F  IS IV+ + +VRD +RFHHF+NGSCSCG +W
Sbjct: 850 HSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 180/387 (46%), Gaps = 63/387 (16%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSG--------------------FLSNTFTLNHL 68
           +  HF   L+EC+ + ++  +H +I+  G                    ++S       +
Sbjct: 30  SPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGV 89

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
           +  Y+    T+ A  + + +     V +  L+  +I  G    A+ +  +ML     P+ 
Sbjct: 90  VASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDH 149

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           FT    +KAC  L     G+ +H  I   GF+ N+ VC++LV MY +C  ++ A  VFD 
Sbjct: 150 FTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDE 209

Query: 189 M---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY-----QSRDRPNQHMLASVINAC 240
           +   G  +V+SW SI+ AH + +    ALE+F E +       + +R +   + +++ AC
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPAC 269

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN----------- 289
           ASL  L   K  H   +R+G   +  V +AL+D YAKCGS+N + KVFN           
Sbjct: 270 ASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWN 329

Query: 290 ----------------------RISN-P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
                                 R  N P  V+T++++I G A+ G  + +LD F +MI  
Sbjct: 330 AMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILD 389

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           G +PN VT + +L AC+  G + +G++
Sbjct: 390 GSEPNSVTIISLLSACASLGALSQGME 416


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 333/557 (59%), Gaps = 5/557 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           HS +L  G  ++ F L  L++ Y  L  T  A  +FD M   +++S+ ++++GY+  G  
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             +  LF++++ +    +  T  ++I+ CS  +DL  G+ +H+ I     + +LV+ +++
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAI 388

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           VDMY KC  +  A  VF  MG +NV++WT+++V  +QN    +AL++F +   + +   N
Sbjct: 389 VDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQ-EEKVAAN 447

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L S+++ CA LG L  G+  H   +R G  F+ V+ SAL+DMYAKCG ++ ++K+FN
Sbjct: 448 SVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFN 507

Query: 290 -RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                  V+   SMI+G   +G GR++L +++ MI   +KPN  TFV +L ACSHSGLV+
Sbjct: 508 NEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVE 567

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG     SM R + + P  KHY C+VD+  R GRL+EA +L K +   P    L    LL
Sbjct: 568 EGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVL--EALL 625

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           S  R H   ++ ++ +++LI  +   +  YV LSN YA A +WE+V+ +R  M+  G+ K
Sbjct: 626 SGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKK 685

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG S +E+ ++ Y F+A +      +++  LL  L  +++  GY+   T  V  DV + 
Sbjct: 686 IPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIP-DTSCVLRDVNEP 744

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            + +++  HSERLA+AFGL+S P G  I+I KNLR+C DCH+V K IS IV+R+ +VRD 
Sbjct: 745 MKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDA 804

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF NG CSC DFW
Sbjct: 805 NRFHHFVNGKCSCNDFW 821



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 228/445 (51%), Gaps = 14/445 (3%)

Query: 37  LQECKHLISLASVHSEILKS----GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L+ C  L+    V  EI+++    GF  + +  + ++N  V+      A+++FD M E +
Sbjct: 152 LKACTDLLD-DEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKD 210

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VV + S++ GY+  G    ++ +F +M+G  + P+  T A ++KAC        G   H+
Sbjct: 211 VVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHS 270

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           ++   G   ++ V +SLVDMY    D   A  VFD M  R+++SW ++I  + QN    E
Sbjct: 271 YVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPE 330

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           +  +FR    QS    +   L S+I  C+    L +G++ H  ++R   E + V+++A+V
Sbjct: 331 SYALFRRL-VQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIV 389

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMY+KCG++  +  VF R+   +V+T+T+M+VG ++ G    +L LF +M    +  N V
Sbjct: 390 DMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSV 449

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           T V ++H C+H G + +G + + + + ++G   DA   + ++DM  + G++  A KL  +
Sbjct: 450 TLVSLVHCCAHLGSLTKG-RTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNN 508

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE----SNQQVANAYVTLSNTYALA 448
                D   +L  +++    +HG    A+   +++IE     NQ    + +T  +   L 
Sbjct: 509 EFHLKD--VILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLV 566

Query: 449 GEWENV-HSLRSEMKRTGIHKEPGC 472
            E + + HS+  +      HK   C
Sbjct: 567 EEGKALFHSMERDHDVRPQHKHYAC 591



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 188/399 (47%), Gaps = 7/399 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           LI + S+H++I+K+   + +F    LI  Y  L     AR +FD+   P      +++AG
Sbjct: 60  LIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAG 119

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           ++   Q      LF+ M    +  N +T    +KAC+ L D   G +I       GF  +
Sbjct: 120 FLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLH 179

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           L V SS+V+   K   +  A++VFD M  ++VV W SII  + Q     E+++MF E   
Sbjct: 180 LYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEM-I 238

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
               RP+   +A+++ AC   G    G  AH  V+  G   +  V ++LVDMY+  G   
Sbjct: 239 GGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTG 298

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +  VF+ + + S++++ +MI G  + G+   S  LF  ++  G   +  T V ++  CS
Sbjct: 299 SAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCS 358

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            +  ++ G + L S   +  +       T +VDM  + G + +A  +   +        +
Sbjct: 359 QTSDLENG-RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG---KKNVI 414

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            W  +L     +G  + A++   Q+ E  ++VA   VTL
Sbjct: 415 TWTAMLVGLSQNGYAEDALKLFCQMQE--EKVAANSVTL 451


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 346/558 (62%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +K+G  S+    N L++ Y +    +    +FD+M + +VVS+T+++AG+   G 
Sbjct: 441 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+++    +  +    ++++ ACS L  + + K+IH++I   G   +LV+ + 
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNG 559

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +VD+YG+C +VD A R+F+L+  ++VVSWTS+I  +  N   +EALE+F     ++   P
Sbjct: 560 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK-ETGVEP 618

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   L S+++A ASL  L  GK  HG ++R G      +AS LVDMYA+CG++  S  VF
Sbjct: 619 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 678

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N I N  +V +TSMI     +G GR ++DLF  M    I P+ + FV VL+ACSHSGL++
Sbjct: 679 NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMN 738

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + L+SM  +Y + P  +HY C+VD+LGR   L+EAY+  K ++V+P     +W  LL
Sbjct: 739 EGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAE--VWCALL 796

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A ++H   ++   A+ +L+E + +    YV +SN YA    W++V  +R  MK +G+ K
Sbjct: 797 GACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKK 856

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM-KERGYVGGKTGLVFVDVED 527
            PGCSW+E+ ++ + F A +    +  E+ S L ++  K+ KE GYV  +T  V  + ++
Sbjct: 857 NPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVA-QTKFVLHNAKE 915

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E + +++  HSERLA+A+G+++ P+G ++RI KNLR+C DCH+  KLIS   ER+ V+RD
Sbjct: 916 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 975

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFHHF+ G CSCGD W
Sbjct: 976 ANRFHHFKGGVCSCGDVW 993



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 9/386 (2%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  LQ C+    +     +H+ +LKS +  N F  N LI  Y R  K   A  +F  M 
Sbjct: 321 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 380

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + + +S+ S+++G++  G    AL  + +M      P+     ++I A +   + + G Q
Sbjct: 381 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ 440

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH +    G   +L V +SLVDMY K   +     +FD M  ++VVSWT+II  HAQN  
Sbjct: 441 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
              ALE+FRE   +  D  +  M++S++ AC+ L  + S K  H  ++R G   + V+ +
Sbjct: 501 HSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQN 558

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            +VD+Y +CG+V+Y+ ++F  I    VV++TSMI      GL   +L+LF+ M   G++P
Sbjct: 559 GIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP 618

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + ++ V +L A +    + +G +    + RK G + +    + +VDM  R G L+++  +
Sbjct: 619 DSISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNV 677

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHG 415
              I+   +   +LW ++++A  +HG
Sbjct: 678 FNFIR---NKDLVLWTSMINAYGMHG 700



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 195/377 (51%), Gaps = 7/377 (1%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYIN 105
           A VH   +K G++S  F  N ++  Y +      ARQLFD M E  +VVS+ S+++ Y +
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            GQ   AL LF +M    + PN +TF   ++AC   + +  G  IH  +    +  N+ V
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 355

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L+ MY +   +  A  +F  M   + +SW S++    QN   HEAL+ + E    + 
Sbjct: 356 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR-DAG 414

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P+   + S+I A A  G  ++G   H   +++G + +  V ++LVDMYAK  S+ Y D
Sbjct: 415 QKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 474

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+++ +  VV++T++I G A+ G    +L+LF E+   GI  + +    +L ACS   
Sbjct: 475 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 534

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+   ++ + S   + G + D      +VD+ G  G +D A ++ + I+       + W 
Sbjct: 535 LIS-SVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFK---DVVSWT 589

Query: 406 TLLSASRLHGRVDIAVE 422
           +++S    +G  + A+E
Sbjct: 590 SMISCYVHNGLANEALE 606



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 191/376 (50%), Gaps = 7/376 (1%)

Query: 49  VHSEILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ ++ S  L N+ F    L+  Y +      A +LFD M    + ++ +++  Y+  G
Sbjct: 136 VHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNG 195

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P  +L L+++M  + +  +  TF  ++KAC +L D   G ++H      G+   + V +
Sbjct: 196 EPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVAN 255

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           S+V MY KCND++GAR++FD M  + +VVSW S+I A++ N Q  EAL +F E    S  
Sbjct: 256 SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL- 314

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN +   + + AC     +  G   H  V++S    N  VA+AL+ MYA+ G +  +  
Sbjct: 315 APNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAAN 374

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F  + +   +++ SM+ G  + GL   +L  ++EM   G KP+ V  + ++ A + SG 
Sbjct: 375 IFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGN 434

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
              G+Q + +   K G+  D +    +VDM  +   +     +   +   PD   + W T
Sbjct: 435 TLNGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKM---PDKDVVSWTT 490

Query: 407 LLSASRLHGRVDIAVE 422
           +++    +G    A+E
Sbjct: 491 IIAGHAQNGSHSRALE 506



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 157/318 (49%), Gaps = 19/318 (5%)

Query: 126 PNEFT----FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS-LVDMYGKCNDVD 180
           P++F+    +++V++ C     L  G+Q+H H+ T    +N V  S+ LV MYGKC  + 
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A ++FD M  + + +W ++I A+  N +   +LE++RE    S    +      ++ AC
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRV-SGIPLDACTFPCILKAC 226

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS-VVTY 299
             L     G   HG+ ++ G      VA+++V MY KC  +N + ++F+R+     VV++
Sbjct: 227 GLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSW 286

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI----QHLD 355
            SMI   +  G    +L LF EM    + PN  TFV  L AC  S  + +G+      L 
Sbjct: 287 NSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 346

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           S Y     + +A     ++ M  R G++ EA  +  ++    D   + W ++LS    +G
Sbjct: 347 SSYYINVFVANA-----LIAMYARFGKMGEAANIFYNMD---DWDTISWNSMLSGFVQNG 398

Query: 416 RVDIAVEASNQLIESNQQ 433
               A++  +++ ++ Q+
Sbjct: 399 LYHEALQFYHEMRDAGQK 416


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/548 (40%), Positives = 333/548 (60%), Gaps = 8/548 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           +SN F  + L++ YV+  KT+ A+ + D + E +VV  T+L+ GY   G+   A+  FQ 
Sbjct: 180 VSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQS 239

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML   V PNE+T+A+V+ +C  L D+  GK IH  +   GF+  L   +SL+ MY +C+ 
Sbjct: 240 MLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSL 299

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD +  VF  +   N V+WTS+I    QN +   AL  FR+    S  +PN   L+S + 
Sbjct: 300 VDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSV-KPNSFTLSSALR 358

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            C++L     G+  HG+V + G + +    S L+++Y KCG  + +  VF+ +S   V++
Sbjct: 359 GCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVIS 418

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
             +MI   A+ G GR +L+LF  MI+ G++PNDVT + VL AC++SGLV+EG +  DS +
Sbjct: 419 LNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDS-F 477

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           RK  I+    HY C+VDMLGR GRL+EA  L   +  +PD   +LW TLLSA ++H +V+
Sbjct: 478 RKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEV-TNPD--LVLWRTLLSACKVHRKVE 534

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A   + +++E         + LSN YA  G+W+ V  ++S+MK   + K P  SWVEI 
Sbjct: 535 MAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEID 594

Query: 479 DQTYAFYAGNALFERGSE-VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
            +T+ F AG+      SE +L  L EL +K K+ GYV  K+  VF D+E+ A+E  +  H
Sbjct: 595 KETHTFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKS-CVFQDMEETAKERSLHQH 653

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AF +     G +IRI+KNLR+C DCH   K++S I++R+ + RD  RFHHFR+G
Sbjct: 654 SEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDG 712

Query: 598 SCSCGDFW 605
           SCSCGD+W
Sbjct: 713 SCSCGDYW 720



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 204/363 (56%), Gaps = 4/363 (1%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           ++ HT +  ++Q  + + +  + ++ +++LKSGF     + + L++  ++  +   ARQL
Sbjct: 45  TTTHTFSQLLRQCIDERSISGIKNIQAQMLKSGF-PVELSGSKLVDASLKCGEIGYARQL 103

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FD M E ++V++ S++A YI   + + A+ +++ M+ N V P+E+T ++V KA S L+  
Sbjct: 104 FDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLE 163

Query: 145 ITGKQIHTHIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
              ++ H      G +  N+ V S+LVDMY K      A+ V D +  ++VV  T++IV 
Sbjct: 164 KEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVG 223

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           ++Q  +  EA++ F+    + + +PN++  ASV+ +C +L  + +GK+ HG++V+SG E 
Sbjct: 224 YSQKGEDTEAVKAFQSMLVE-KVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFES 282

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
                ++L+ MY +C  V+ S  VF  I  P+ VT+TS+I G  + G    +L  F +M+
Sbjct: 283 ALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMM 342

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
              +KPN  T    L  CS+  + +EG Q +  +  KYG   D    + ++++ G+ G  
Sbjct: 343 RDSVKPNSFTLSSALRGCSNLAMFEEGRQ-VHGIVSKYGFDRDKYAGSGLIELYGKCGCS 401

Query: 384 DEA 386
           D A
Sbjct: 402 DMA 404



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 141/267 (52%), Gaps = 25/267 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++KSGF S   +   L+  Y+R      +  +F  +  PN V++TSL++G +  G+
Sbjct: 271 IHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGR 330

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL+ F+KM+ + V PN FT ++ ++ CS LA    G+Q+H  +  +GF  +    S 
Sbjct: 331 EETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSG 390

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF-REFNYQSRDR 227
           L+++YGKC   D AR VFD +   +V+S  ++I ++AQN  G EALE+F R  N     +
Sbjct: 391 LIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGL--Q 448

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-----------SALVDMYA 276
           PN   + SV+ AC + G           +V  GCE  D              + +VDM  
Sbjct: 449 PNDVTVLSVLLACNNSG-----------LVEEGCELFDSFRKDKIMLTNDHYACMVDMLG 497

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMI 303
           + G +  ++ +   ++NP +V + +++
Sbjct: 498 RAGRLEEAEMLITEVTNPDLVLWRTLL 524


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 327/560 (58%), Gaps = 6/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K G     F  N LI+ Y +L     A  +F  M   ++V++ S+++     G+
Sbjct: 190 MHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGK 249

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-NLVVCS 167
              A+ LF  M+ + V P+  T  ++  A +   D +  K +H ++   G+   +++  +
Sbjct: 250 VAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGN 309

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           ++VDMY K + +D A++VFD +  R+VVSW ++I  + QN   +EA+ ++ + +     +
Sbjct: 310 AMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLK 369

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P Q    SV+ A + LG L  G   H + +++G   +  V + L+D+YAKCG +  +  +
Sbjct: 370 PIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFL 429

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +   S   + ++I G   +G G  +L LF++M    IKP+ VTFV +L ACSH+GLV
Sbjct: 430 FEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLV 489

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           D+G    D M   YGI+P AKHYTC+VDMLGR G+LDEA++  +S+ + PD    +WG L
Sbjct: 490 DQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSA--VWGAL 547

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+HG V++   AS  L E + +    YV +SN YA  G+W+ V ++RS ++R  + 
Sbjct: 548 LGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQ 607

Query: 468 KEPGCSWVEIRDQTYAFYAGNAL--FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           K PG S +E++     FY+G       +  E+   L +L  KMK  GYV   +  V  DV
Sbjct: 608 KTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYS-FVLQDV 666

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           E++ +E+I+  HSERLA+AFG+I+ P G  + I KNLR+C DCH   K IS I ER+ +V
Sbjct: 667 EEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIV 726

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHHF++G CSCGDFW
Sbjct: 727 RDANRFHHFKDGHCSCGDFW 746



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 213/405 (52%), Gaps = 10/405 (2%)

Query: 45  SLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           S A +H+  L+ G L  N F    L++ Y+R  +   A ++FDEM E +V ++ ++++G 
Sbjct: 84  SAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGL 143

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
               +   A+ L  +M+G  V  +  T ++V+  C +L D      +H +    G    L
Sbjct: 144 CRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGEL 203

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            VC++L+D+YGK   +  A  VF  M  R++V+W SII A+ Q  +   A+E+F     +
Sbjct: 204 FVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGM-ME 262

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVN 282
           S   P+   L S+ +A A  G  +  K  H  V R G +  D++A +A+VDMYAK   ++
Sbjct: 263 SGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKID 322

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHAC 341
            + KVF+ + +  VV++ ++I G  + GL   ++ ++N+M +  G+KP   TFV VL A 
Sbjct: 323 AAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAY 382

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           S+ G + +G++ + ++  K G+  D    TC++D+  + G+L EA  L + +     G  
Sbjct: 383 SYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP- 440

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             W  +++   +HG    A+   +Q+    +++   +VT  +  A
Sbjct: 441 --WNAIIAGLGVHGHGAKALSLFSQM--QQEEIKPDHVTFVSLLA 481


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 334/557 (59%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS  +K+GF S+ +    LI+ Y + +    AR++ + + + +VVS+TS++AGY+    
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL  F++M    VWP+    A+   AC+ +  +  G QIH  +   G+  ++ + ++
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNT 487

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV++Y +C   + A  +F  +  ++ ++W  +I    Q+    +AL +F + + Q+  + 
Sbjct: 488 LVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS-QAGAKY 546

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S I+A A+L  +  GK  HG  V++G      VA+AL+ +Y KCGS+  +  +F
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIF 606

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +S  + V++ ++I   +++G G  +LDLF++M   G+KPNDVTF+GVL ACSH GLV+
Sbjct: 607 SEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 666

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ +  SM   YG+ P   HY CVVD+LGR G+LD A +    + +  +   ++W TLL
Sbjct: 667 EGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANA--MIWRTLL 724

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA ++H  ++I   A+  L+E     + +YV LSN YA+ G+W N   +R  MK  GI K
Sbjct: 725 SACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRK 784

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E+++  +AF+ G+ L     ++   L EL  ++ + GY      L F + E E
Sbjct: 785 EPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNL-FHEKEQE 843

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++    +HSE+LA+AFGL+++P  I +R++KNLR+C DCH   K  S++  R+ V+RDV
Sbjct: 844 QKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDV 903

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF +GSCSCGD+W
Sbjct: 904 YRFHHFNSGSCSCGDYW 920



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 196/369 (53%), Gaps = 8/369 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+++ K  F S TF  N LI  Y+     ++A ++F +ML  + V++ +L++G+   G 
Sbjct: 166 IHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGH 225

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F +M  + + P+  T A+++ AC+ + DL  GKQ+H+++   G  ++ +   S
Sbjct: 226 GECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS 285

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC D++ A  +F+L    NVV W  ++VA+ Q +   ++ E+F +    +   P
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ-ATGIHP 344

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+     ++  C   G++  G+  H + +++G E +  V+  L+DMY+K   ++ + K+ 
Sbjct: 345 NKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL 404

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VV++TSMI G  ++     +L  F EM   G+ P+++       AC+    + 
Sbjct: 405 EMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMR 464

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+Q    +Y   G   D   +  +V++  R GR +EA+ L + I    +   + W  L+
Sbjct: 465 QGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDE---ITWNGLI 520

Query: 409 SA---SRLH 414
           S    SRL+
Sbjct: 521 SGFGQSRLY 529



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 195/404 (48%), Gaps = 5/404 (1%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R  C T A  +        L     +HS +LK+G   +  T   L++ YV+    + A  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F+     NVV +  ++  Y  +     +  +F +M    + PN+FT+  +++ C+    
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ 361

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           +  G+QIH+     GF+ ++ V   L+DMY K   +D AR++ +++  R+VVSWTS+I  
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           + Q+    EAL  F+E        P+   LAS  +ACA +  +  G   H  V  SG   
Sbjct: 422 YVQHDFCEEALATFKEMQ-DCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  + + LV++YA+CG    +  +F  I +   +T+  +I G  +  L   +L +F +M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G K N  TF+  + A ++   + +G Q +     K G   + +    ++ + G+ G +
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALISLYGKCGSI 599

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           ++A  +   + +  +   + W T++++   HGR   A++  +Q+
Sbjct: 600 EDAKMIFSEMSLRNE---VSWNTIITSCSQHGRGLEALDLFDQM 640



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 177/347 (51%), Gaps = 4/347 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +  G  ++    N LI+ Y +      ARQ+F E+   + VS+ ++++GY   G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  L+ +M    V P  +  ++V+ AC+       G+ IH  +    F     V ++
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 169 LVDMYGKCNDVDGARRVF-DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+ +Y        A RVF D++ C + V++ ++I  HAQ   G  AL++F E    S  R
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFC-DRVTFNTLISGHAQCGHGECALQIFDEMQL-SGLR 242

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +AS++ ACAS+G L  GK  H  ++++G  F+ +   +L+D+Y KCG +  +  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN     +VV +  M+V   +      S ++F +M + GI PN  T+  +L  C+ +G +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           + G Q + S+  K G   D      ++DM  +   LD+A K+ + ++
Sbjct: 363 ELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE 408



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 132/262 (50%), Gaps = 5/262 (1%)

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           +IH      G   + ++ + L+D+Y K   V  AR+VF  +  R+ VSW +++  +AQ  
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
            G EA  ++ + ++ +   P  ++L+SV++AC        G++ H  V +        V 
Sbjct: 124 LGKEAFRLYSQMHWTAV-IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +AL+ +Y   GS   +++VF  +     VT+ ++I G A+ G G  +L +F+EM   G++
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VT   +L AC+  G + +G Q L S   K G+  D      ++D+  + G ++ A+ 
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 389 LAKSIQVDPDGGPLLWGTLLSA 410
           +     +      +LW  +L A
Sbjct: 302 I---FNLGDRTNVVLWNLMLVA 320


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/573 (37%), Positives = 327/573 (57%), Gaps = 8/573 (1%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L  +++   +H  ++K G   + F  N LIN Y +    + AR+ F +M   +V
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S++A Y     P  A   F KM  N   P+  T  ++    +   D    + +H  
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 154 IETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           I   G+   ++V+ +++VDMY K   +D A +VF+++  ++V+SW ++I  +AQN    E
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE 502

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           A+E+++         PNQ    S++ A A +G L  G   HG V+++    +  VA+ L+
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 562

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           D+Y KCG +  +  +F ++   S VT+ ++I     +G    +L LF EM+  G+KP+ V
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFV +L ACSHSG V+EG +    + ++YGI P  KHY C+VD+LGR G L+ AY   K 
Sbjct: 623 TFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKD 681

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + PD    +WG LL A R+HG +++   AS++L E + +    YV LSN YA  G+WE
Sbjct: 682 MPLQPDAS--IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWE 739

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +RS  +  G+ K PG S +E+  +   FY GN    +  E+   LR L  KMK  G
Sbjct: 740 GVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLG 799

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y+   +  V  DVE++ +E I+  HSERLA+AFG+IS P    IRI KNLR+C DCH+  
Sbjct: 800 YIPDYS-FVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNAT 858

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS I +R+ VVRD NRFHHF++G CSCGD+W
Sbjct: 859 KFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 202/399 (50%), Gaps = 7/399 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C  L+    +H    K GF  N F    LI+ Y R   T +AR LFD+M   +
Sbjct: 221 FPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 280

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + S+ ++++G I  G    AL +  +M    +  N  T  +++  C  L D+ T   IH 
Sbjct: 281 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHL 340

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           ++   G +++L V ++L++MY K  +++ AR+ F  M   +VVSW SII A+ QN     
Sbjct: 341 YVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVT 400

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV-ASAL 271
           A   F +       +P+   L S+ +  A      + +  HG ++R G    DVV  +A+
Sbjct: 401 AHGFFVKMQLNGF-QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAV 459

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN 330
           VDMYAK G ++ + KVF  I    V+++ ++I G A+ GL   +++++  M   + I PN
Sbjct: 460 VDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN 519

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V +L A +H G + +G++ +     K  +  D    TC++D+ G+ GRL +A  L 
Sbjct: 520 QGTWVSILPAYAHVGALQQGMK-IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLF 578

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             +   P    + W  ++S   +HG  +  ++   ++++
Sbjct: 579 YQV---PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 614



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 209/422 (49%), Gaps = 10/422 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +G + + F    L+N Y  L    ++R  FD++ + +V ++ S+++ Y++ G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 109 PQIAL-LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
              A+   +Q +L + + P+ +TF  V+KAC  L D   G++IH      GFQ+N+ V +
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 254

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MY +      AR +FD M  R++ SW ++I    QN    +AL++  E   +   +
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-K 313

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   + S++  C  LG + +  + H  V++ G EF+  V++AL++MYAK G++  + K 
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F ++    VV++ S+I    +      +   F +M   G +P+ +T V +    + S   
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
                    + R+  ++ D      VVDM  + G LD A+K+    ++ P    + W TL
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV---FEIIPVKDVISWNTL 490

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           ++    +G    A+E    + E  + + N   +V++   YA  G  +    +   + +T 
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTN 550

Query: 466 IH 467
           +H
Sbjct: 551 LH 552



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            K +H  +   G   ++ + + LV++Y    DV  +R  FD +  ++V +W S+I A+  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N   HEA+  F +    S  RP+ +    V+ AC   G LV G+  H    + G ++N  
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVF 251

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA++L+ MY++ G    +  +F+ +    + ++ +MI G  + G    +LD+ +EM   G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDE 385
           IK N VT V +L  C   G +   +  L  +Y  K+G+  D      +++M  + G L++
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAM--LIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 386 AYK 388
           A K
Sbjct: 370 ARK 372


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/564 (37%), Positives = 335/564 (59%), Gaps = 4/564 (0%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           LISL  +VH   +K+ F       N L++ Y +      A+ +F EM   +VVSYTS++A
Sbjct: 311 LISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIA 370

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G    A+ LF++M    + P+ +T   V+  C+    L  GK++H  I+     +
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGF 430

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V ++L+DMY KC  +  A  VF  M  ++++SW ++I  +++N   +EAL +F    
Sbjct: 431 DIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLL 490

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            + R  P++  +A V+ ACASL     G+  HG ++R+G   +  VA++LVDMYAKCG++
Sbjct: 491 VEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  +F+ I++  +V++T MI G   +G G+ ++ LFN+M   GI+P++++FV +L+AC
Sbjct: 551 LLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYAC 610

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLVDEG +  + M  +  I P  +HY C+VDML RTG L +AY+  +++ + PD   
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDA-- 668

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +WG LL   R+H  V +A   + ++ E   +    YV ++N YA A +WE V  LR  +
Sbjct: 669 TIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRI 728

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
            + G+ K PGCSW+EI+ +   F AG++      ++ + LR +  +M E GY    T   
Sbjct: 729 GQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGY-SPLTKYA 787

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            +D E+  +EE +  HSE+LA+A G+IS   G  IR+ KNLR+C DCH++ K +S +  R
Sbjct: 788 LIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRR 847

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + V+RD NRFH F++G CSC  FW
Sbjct: 848 EIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 180/354 (50%), Gaps = 4/354 (1%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +Q   + K L     V + I  +GF+ ++   + L   Y      + A ++FD++     
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKA 160

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + +  LM      G    ++ LF+KM+ + V  + +TF+ V K+ S L  +  G+Q+H +
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGY 220

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   GF     V +SLV  Y K + VD AR+VFD M  R+V+SW SII  +  N    + 
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALV 272
           L +F +  +   +  +   + SV   CA   RL+S G+  H   V++     D   + L+
Sbjct: 281 LSVFVQMLFSGIE-IDLATIVSVFAGCAD-SRLISLGRAVHCFGVKACFSREDRFCNTLL 338

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMY+KCG ++ +  VF  +S  SVV+YTSMI G A+ GL   ++ LF EM   GI P+  
Sbjct: 339 DMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           T   VL+ C+ + L+DEG + +    ++  +  D      ++DM  + G + EA
Sbjct: 399 TVTAVLNCCARNRLLDEG-KRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 331/557 (59%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+  +K+G + ++F    LI+ Y +  K + A  LF      ++ S+ ++M GYI  G 
Sbjct: 1030 IHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGD 1089

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL L+  M  +    N+ T A   KA   L  L  GKQI   +   GF  +L V S 
Sbjct: 1090 FPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISG 1149

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            ++DMY KC +++ ARR+F+ +   + V+WT++I    +N Q   AL  +      S+ +P
Sbjct: 1150 VLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRL-SKVQP 1208

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +++  A+++ AC+ L  L  G+  H   V+  C F+  V ++LVDMYAKCG++  +  +F
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1268

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             R +   + ++ +MIVG A++G    +L  F EM SRG+ P+ VTF+GVL ACSHSGLV 
Sbjct: 1269 KRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVS 1328

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            E  ++  SM + YGI P+ +HY+C+VD L R GR+ EA K+  S+  +      ++ TLL
Sbjct: 1329 EAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASAS--MYRTLL 1386

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            +A R+    +     + +L+      + AYV LSN YA A +WENV S R+ M++  + K
Sbjct: 1387 NACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKK 1446

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            +PG SWV+++++ + F AG+   E    + + +  + ++++E GY+   T    VDVE+E
Sbjct: 1447 DPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYL-PDTDFALVDVEEE 1505

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +E  +  HSE+LA+A+GL+  P   T+R++KNLR+C DCH+  K IS + ER+ V+RD 
Sbjct: 1506 DKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDA 1565

Query: 589  NRFHHFRNGSCSCGDFW 605
            NRFHHFR+G CSCGD+W
Sbjct: 1566 NRFHHFRSGVCSCGDYW 1582



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 185/405 (45%), Gaps = 35/405 (8%)

Query: 48   SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
            S+H   +K G   + F    L+N Y +  + + AR LFD M   +VV +  +M  Y++ G
Sbjct: 748  SLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG--KQIHTHIETFGFQYNLVV 165
                ALLLF +     + P++ T  T+ +      +++    KQ+  +  T  F Y+   
Sbjct: 808  LEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAY-GTKLFMYDDDD 866

Query: 166  CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
              S                        +V++W   +    Q  +  EA++ F +    SR
Sbjct: 867  DGS------------------------DVIAWNKTLSWFLQRGETWEAVDCFVDM-INSR 901

Query: 226  DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
               +      +++  A L  L  GK  HG+VVRSG +    V + L++MY K GSV+ + 
Sbjct: 902  VACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRAR 961

Query: 286  KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             VF +++   +V++ +MI G A  GL   S+ +F +++  G+ P+  T   VL ACS  G
Sbjct: 962  TVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021

Query: 346  LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-W 404
                    + +   K G++ D+   T ++D+  ++G+++E    A+ + V+ DG  L  W
Sbjct: 1022 GGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEE----AEFLFVNQDGFDLASW 1077

Query: 405  GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
              ++    + G    A+     + ES ++     +TL+N    AG
Sbjct: 1078 NAMMHGYIVSGDFPKALRLYILMQESGERANQ--ITLANAAKAAG 1120



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 5/204 (2%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-- 190
           ++++     +DL  GK+ H  I T G   +  + ++L+ MY KC  +  AR++FD     
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R++V+W +I+ AHA  A+  +   +FR    +S     +H LA V   C       + +
Sbjct: 691 SRDLVTWNAILSAHADKAR--DGFHLFRLLR-RSFVSATRHTLAPVFKMCLLSASPSAAE 747

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG  V+ G +++  VA ALV++YAK G +  +  +F+ +    VV +  M+      G
Sbjct: 748 SLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807

Query: 311 LGRFSLDLFNEMISRGIKPNDVTF 334
           L   +L LF+E    G++P+DVT 
Sbjct: 808 LEYEALLLFSEFNRTGLRPDDVTL 831



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 183/407 (44%), Gaps = 50/407 (12%)

Query: 31  AHFIQQLQE----CKHLISLASV------HSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           AH I  + +     +H I+ + +      H+ IL SG   + F  N+LI  Y +      
Sbjct: 620 AHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSS 679

Query: 81  ARQLFDEMLEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           AR+LFD   +   ++V++ ++++ + +  + +    LF+ +  + V     T A V K C
Sbjct: 680 ARKLFDTTPDTSRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMC 737

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
            + A     + +H +    G Q+++ V  +LV++Y K   +  AR +FD MG R+VV W 
Sbjct: 738 LLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWN 797

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
            ++ A+      +EAL +F EFN ++  RP+       +  C +L R+V  K        
Sbjct: 798 VMMKAYVDTGLEYEALLLFSEFN-RTGLRPDD------VTLC-TLARVVKSK-------- 841

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVF---NRISNPSVVTYTSMIVGAAKYGLGRFS 315
                 +V+   L  + A      Y  K+F   +      V+ +   +    + G    +
Sbjct: 842 -----QNVLEWQLKQLKA------YGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEA 890

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           +D F +MI+  +  + +TFV +L   +    ++ G Q +  +  + G+        C+++
Sbjct: 891 VDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQ-IHGIVVRSGLDQVVSVGNCLIN 949

Query: 376 MLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           M  +TG +  A  +   + +VD     + W T++S   L G  + +V
Sbjct: 950 MYVKTGSVSRARTVFWQMNEVD----LVSWNTMISGCALSGLEECSV 992


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 329/545 (60%), Gaps = 4/545 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N LIN Y++L   + A++LFDEM E N+ ++ +++AG       + AL LF++M 
Sbjct: 127 NVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMY 186

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
           G    P+EFT  +V++ C+ L  L+ G+++H  +   GF+ + VV SSL  MY K   + 
Sbjct: 187 GLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLS 246

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
              ++   M  R VV+W ++I   AQN    E L  +         RP++    SV++AC
Sbjct: 247 DGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGF-RPDKITFVSVLSAC 305

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           + L  L  G+  H  V+++G      V S+L+ MY++ G +  S K F    N  VV ++
Sbjct: 306 SELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWS 365

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMI     +G G  +L+LF++M    ++ N+VTF+ +L+ACSHSGL ++G ++ D M +K
Sbjct: 366 SMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKK 425

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           Y + P  +HYTCVVD+LGR GRL+EA  + +S+ V PDG  ++W TLL+A +LH   ++A
Sbjct: 426 YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDG--IIWKTLLAACKLHKEAEMA 483

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
              S ++I+ +   A +YV LSN +A A  W NV  +R  M+   + KEPG SW+E+++ 
Sbjct: 484 ERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNL 543

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F  G+    +  E+   L+EL  ++K+ GYV  + G V  D+++E +E  +  HSE+
Sbjct: 544 VHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYV-PELGSVLHDMDNEEKEYNLAHHSEK 602

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
            A+AF L++  + + IR+MKNLR+C DCH+  K IS I  R+ +VRD +RFHHF++G CS
Sbjct: 603 FAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECS 662

Query: 601 CGDFW 605
           CG++W
Sbjct: 663 CGNYW 667



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 177/355 (49%), Gaps = 39/355 (10%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFG--------------------FQYNL 163
           +W +   F+ ++++C  L  L  GKQ+H+ I T G                    F+ +L
Sbjct: 58  IWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSL 117

Query: 164 VVCSS-----------LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           V+ S+           L++ Y +  D++ A+++FD M  RN+ +W ++I    Q     +
Sbjct: 118 VLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQ 177

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +F+E  Y     P++  L SV+  CA L  L++G+  H  +++ G E + VV S+L 
Sbjct: 178 ALSLFKEM-YGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLA 236

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            MY K GS++  +K+   +   +VV + ++I G A+ G     L+ +N M   G +P+ +
Sbjct: 237 HMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKI 296

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFV VL ACS    + +G Q + +   K G        + ++ M  R+G L+++ K    
Sbjct: 297 TFVSVLSACSELATLGQG-QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAF-- 353

Query: 393 IQVDPDG-GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             VD +    +LW ++++A   HGR + A+E  +Q+ E  +  AN    LS  YA
Sbjct: 354 --VDRENFDVVLWSSMIAAYGFHGRGEEALELFHQM-EDLKMEANEVTFLSLLYA 405



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 1/204 (0%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           + L++   VH+ +LK GF  ++   + L + Y++        +L   M    VV++ +L+
Sbjct: 208 RSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLI 267

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
           AG    G P+  L  +  M      P++ TF +V+ ACS LA L  G+QIH  +   G  
Sbjct: 268 AGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGAS 327

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
             L V SSL+ MY +   ++ + + F      +VV W+S+I A+  + +G EALE+F + 
Sbjct: 328 SVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQM 387

Query: 221 NYQSRDRPNQHMLASVINACASLG 244
               +   N+    S++ AC+  G
Sbjct: 388 E-DLKMEANEVTFLSLLYACSHSG 410


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/590 (37%), Positives = 346/590 (58%), Gaps = 19/590 (3%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++ F   ++ C  L  L S    H + L  GF S+ F  + LI+ Y +  K   AR LFD
Sbjct: 82  RSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFD 141

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-----------GNLVWPNEFTFATVI 135
           E+   N+V++TSL+ GY+       AL++F++ L           G  V  +     +V+
Sbjct: 142 EIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSV--DSVAMISVL 199

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
            ACS +++    + +H      G    + V ++L+D Y KC +V  +R+VFD M  ++VV
Sbjct: 200 SACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVV 259

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SW S+I  +AQN    +A E+F         + N+  L++++ ACA  G L  G   H  
Sbjct: 260 SWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQ 319

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           V++ G   N ++A++++DMY KCG    +   F+ +   +V ++T+MI G   +G  R +
Sbjct: 320 VIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREA 379

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           LD+F +MI  G+KPN +TF+ VL ACSH+G ++EG +  ++M  +Y + P  +HY C+VD
Sbjct: 380 LDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVD 439

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +LGR G + EAY L KS++V  D   +LWG+LL+A R+H  V++A  ++ +L + +    
Sbjct: 440 LLGRAGYIKEAYNLIKSMKVRRD--FVLWGSLLAACRIHKDVELAEISARELFKLDPSNC 497

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV L+N YA AG W++V  +R  +K  G+ K PG S VE++ + + F  G+    +  
Sbjct: 498 GYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHE 557

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           ++   L EL  K++E GYV      V  DV++E +E IV +HSE+LA+AFG+++   G T
Sbjct: 558 KIYKYLEELSVKLQEAGYVPNMAS-VLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGST 616

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I ++KNLR+C DCH V KLIS IV R+ +VRD  RFHHF++G CSCGD+W
Sbjct: 617 IHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 196/373 (52%), Gaps = 16/373 (4%)

Query: 84  LFDEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           LF++  +  +V S+ SL+A     G    +L  F  M    + PN  TF   IK+CS L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           DL +GKQ H     FGF+ +L V S+L+DMY KC  +  AR +FD +  RN+V+WTS+I 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHM--------LASVINACASLGRLVSGKVAHG 254
            + QN   HEAL +F+EF ++  +   + +        + SV++AC+ +      +  HG
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
           V ++ G +    V + L+D YAKCG V+ S KVF+ ++   VV++ SMI   A+ GL   
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 315 SLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
           + ++F+ M+ + G K N+VT   +L AC+H G +  G+   D +  K G + +    T +
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVI-KMGYVNNVIMATSI 335

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           +DM  + G+ + A      ++   +     W  +++   +HG    A++   Q+I +   
Sbjct: 336 IDMYCKCGQAEMARNAFDGMK---EKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAG-- 390

Query: 434 VANAYVTLSNTYA 446
           V   Y+T  +  A
Sbjct: 391 VKPNYITFISVLA 403


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 337/558 (60%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K+G+  + F    L++ YV+      A ++FD++ + NVVS+T+++ GYI+ G 
Sbjct: 136 IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+  F+K+L   + P+ F+   V+ AC+ L D  +G+ I  +I   G   N+ V +S
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATS 255

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-R 227
           L+DMY KC +++ A  +F  M  +++VSW+++I  +A N    +AL++F  F  QS + +
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF--FQMQSENLK 313

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+ + +  V++ACA+LG L  G  A  ++ R+    N V+ +AL+DMY+KCGSV  + ++
Sbjct: 314 PDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEI 373

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +     V + +M+VG +  G  +    LF+ +   GI+P++ TF+G+L  C+H G V
Sbjct: 374 FTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFV 433

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG Q  ++M R + + P  +HY C+VD+LGR G L+EA++L  ++ + P+   ++WG L
Sbjct: 434 NEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNA--VVWGAL 491

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   +LH    +A +   +LIE     +  YV LSN Y+    WE    +RS MK   I 
Sbjct: 492 LGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQ 551

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K   CSW+EI    + F  G+       ++ + L EL R++K  G+V   T  V  D+E+
Sbjct: 552 KIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV-PTTEFVLFDIEE 610

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +E  +G HSE+LA+AFGLI+ P    IR++KNLR+C DCHD  KLIS I +R+ ++RD
Sbjct: 611 EEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRD 670

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFH F +GSCSC D+W
Sbjct: 671 TNRFHTFIDGSCSCRDYW 688



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 196/349 (56%), Gaps = 2/349 (0%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  +H+ +L+     + + LN ++ C +    T  ++ +F ++ EPN+  + +++ G ++
Sbjct: 32  LKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
                 A+ L+  M G    PN FT   V+KAC+   D+  G +IH+ +   G+ +++ V
Sbjct: 92  KDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFV 151

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +SL+ +Y KC++ D A +VFD +  +NVVSWT+II  +  +    EA+  F++   +  
Sbjct: 152 KTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL-LEMG 210

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P+   L  V+ ACA LG   SG+     +  SG   N  VA++L+DMY KCG++  ++
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ +    +V++++MI G A  GL + +LDLF +M S  +KP+  T VGVL AC+  G
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            +D GI    S+  +   + +    T ++DM  + G + +A+++  +++
Sbjct: 331 ALDLGIW-ASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 339/559 (60%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L + +    LI  Y +      AR +FDEM + NVVS+T++++ Y   G 
Sbjct: 84  VHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGF 143

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +ML +   PN FTFAT++ +C       TG+QIH+      ++ ++ V SS
Sbjct: 144 AFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSS 203

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +  A  VF  +  R+VV+ T+II  +AQ     EAL++FR+   +  +  
Sbjct: 204 LLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN-S 262

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    ASV+ A + L  L  GK  H  V+RSG     V+ ++L+DMY+KCG+V Y+ ++F
Sbjct: 263 NSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIF 322

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
           + +   + +++ +M+VG +K+G+ R  L+LF  M     +KP+ +T++ VL  CSH  L 
Sbjct: 323 DSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLE 382

Query: 348 DEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           D G++   +M   K GI PD  HY CVVD+LGR GR++EA+   K +   P     +WG+
Sbjct: 383 DMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAA--IWGS 440

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL + R+H  V+I +    +L+E   + A  YV LSN YA AG+WE++ ++R  M+   +
Sbjct: 441 LLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAV 500

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SWVE+    + F+A +    R  EV + ++EL  K KE GYV   + +++ DV+
Sbjct: 501 TKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLY-DVD 559

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+++  HSE+LALAFGLI+ P+G TIR++KNLR+C DCH   K +S +  R  ++R
Sbjct: 560 EEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILR 619

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH+   G CSCGD+W
Sbjct: 620 DKNRFHNIVGGVCSCGDYW 638



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 157/313 (50%), Gaps = 7/313 (2%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           + +++  C     +  G+++HTH+    +  ++ + + L+ +Y KC+ +  AR +FD M 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC-ASLGRLVSG 249
            RNVVSWT++I A++Q     EAL +F E   +S   PN    A+++ +C  SLG   +G
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEM-LRSDTEPNHFTFATILTSCYGSLG-FETG 182

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  H + ++   E +  V S+L+DMYAK G +  +  VF+ +    VV  T++I G A+ 
Sbjct: 183 RQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQM 242

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           GL   +L LF ++   G+  N VT+  VL A S    ++ G Q + S   + G       
Sbjct: 243 GLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-VHSHVLRSGQYSYVVL 301

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
              ++DM  + G +  A ++  S+   P+   + W  +L     HG     +E    + E
Sbjct: 302 LNSLIDMYSKCGNVCYARRIFDSM---PERTCISWNAMLVGYSKHGMAREVLELFKLMRE 358

Query: 430 SNQQVANAYVTLS 442
            N+   ++   L+
Sbjct: 359 ENKVKPDSITYLA 371


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/565 (36%), Positives = 333/565 (58%), Gaps = 5/565 (0%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           + L+    +H+ I+KSG        ++LIN Y + +   ++ Q+F+E    +  +++S++
Sbjct: 68  RSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVI 127

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
           + +    +P +A+  F +M+G  + P++  F +  KAC++L     GK +H  +   G+ 
Sbjct: 128 SSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYD 187

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            ++ V SSLVDMY KC D+  AR VFD M  RNVVSW+ +I  + Q  +  EA+ +F+E 
Sbjct: 188 VDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEA 247

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
             +  D  N   L+SVI  C S   L  GK  HG+  ++  + +  V S+L+ +Y+KCG 
Sbjct: 248 LLEGLD-VNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGL 306

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  + +VF+ +   ++  + +M++  A++   + + DLF +M + G++PN +TF+ VL+A
Sbjct: 307 IEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYA 366

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSH+GLV+EG ++  ++ +KY I P  +HY  +VD+LGR G+L EA  + K +  +P   
Sbjct: 367 CSHAGLVEEGKKYF-ALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTES 425

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +WG  ++  R+HG  D+A  A++++ E     +  +V LSN YA AG +E+    R  
Sbjct: 426 --VWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKM 483

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           ++  G+ KE G SW+E  ++ + F AG+    R  E+   L +L  +M+  GYV   T  
Sbjct: 484 LRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYV-ADTSF 542

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  +V  E + + +  HSERLA+AFGLISIP G  IRIMKNLR+C DCH+  K IS +  
Sbjct: 543 VLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSG 602

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  +VRD NRFH F +G CSC D+W
Sbjct: 603 RVIIVRDNNRFHRFEDGKCSCADYW 627


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 330/567 (58%), Gaps = 4/567 (0%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E   L SL  +H    + G  SN    N  I  Y R      + ++FD M    V S+ +
Sbjct: 319 ERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNA 378

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           L+ GY     P+ AL L+ +M  + + P+ FT  +++ ACS +  L  G++IH      G
Sbjct: 379 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 438

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
              +  +  SL+ +Y  C     A+ +FD M  R++VSW  +I  ++QN    EA+ +FR
Sbjct: 439 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 498

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +       +P +  +  V  AC+ L  L  GK  H   +++    +  V+S+++DMYAK 
Sbjct: 499 QM-LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 557

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +  S ++F+R+    V ++  +I G   +G G+ +L+LF +M+  G+KP+D TF G+L
Sbjct: 558 GCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 617

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACSH+GLV++G+++ + M   + I P  +HYTCVVDMLGR GR+D+A +L + +  DPD
Sbjct: 618 MACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPD 677

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +W +LLS+ R+HG + +  + +N+L+E   +    YV +SN +A +G+W++V  +R
Sbjct: 678 S--RIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVR 735

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MK  G+ K+ GCSW+E+  + + F  G+ +     EV    R LE K+   GY    T
Sbjct: 736 GRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYT-PDT 794

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
           G V  D+E+E +  I+  HSE+LA++FGL++  KG+ +R+ KNLR+C DCH+  K IS +
Sbjct: 795 GSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKV 854

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
           V RD VVRD  RFHHFR+G CSCGD+W
Sbjct: 855 VNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 173/345 (50%), Gaps = 9/345 (2%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCHTKAHFIQQ--LQECKHLISLA---SVHSEILKSGFLS 60
           TRN +F  A S  +     +  H   +F     ++ C  L+ L     +H    K   +S
Sbjct: 76  TRNELFEDAMSIFSELISVTE-HKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVS 134

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F  N LI  Y +    + A ++F+ M E N+VS+ S++ G+   G  Q +   F++ML
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 121 -GNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
            G   + P+  T  TV+  C+   D+  G  +H      G    L+V +SL+DMY KC  
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ-SRDRPNQHMLASVI 237
           +  A+ +FD    +N+VSW S+I  +A+         + ++   + ++ + ++  + +V+
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
             C     L S K  HG   R G + N++VA+A +  Y +CG++  S++VF+ +   +V 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           ++ +++ G A+    R +LDL+ +M   G+ P+  T   +L ACS
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 5/298 (1%)

Query: 49  VHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H  +  S    N F LN  +I  Y        +R +FD++   N+  + ++++ Y    
Sbjct: 20  LHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNE 79

Query: 108 QPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + A+ +F +++      P+ FT   VIKAC+ L DL  G+ IH          ++ V 
Sbjct: 80  LFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVG 139

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+ MYGKC  V+ A +VF+ M  RN+VSW SII   ++N    E+   FRE       
Sbjct: 140 NALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEES 199

Query: 227 -RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P+   L +V+  CA    +  G   HG+ V+ G     +V ++L+DMY+KC  ++ + 
Sbjct: 200 FVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQ 259

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKPNDVTFVGVLHAC 341
            +F++    ++V++ SMI G A+      +  L  +M +    +K ++ T + VL  C
Sbjct: 260 LLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 4/262 (1%)

Query: 131 FATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
              +++AC    D+  G+++H  +  +  F  + V+ + ++ MY  C     +R VFD +
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             +N+  W +I+ A+ +N    +A+ +F E    +  +P+   L  VI ACA L  L  G
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           ++ HG+  +     +  V +AL+ MY KCG V  + KVF  +   ++V++ S+I G ++ 
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 310 GLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           G  + S + F EM+       P+  T V VL  C+    +++G+  +  +  K G+  + 
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA-VHGLAVKLGLNEEL 239

Query: 368 KHYTCVVDMLGRTGRLDEAYKL 389
                ++DM  +   L EA  L
Sbjct: 240 MVNNSLIDMYSKCRFLSEAQLL 261


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 337/558 (60%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K+G+  + F    L++ YV+      A ++FD++ + NVVS+T+++ GYI+ G 
Sbjct: 136 IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+  F+K+L   + P+ F+   V+ AC+ L D  +G+ I  +I   G   N+ V +S
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATS 255

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-R 227
           L+DMY KC +++ A  +F  M  +++VSW+++I  +A N    +AL++F  F  QS + +
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF--FQMQSENLK 313

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+ + +  V++ACA+LG L  G  A  ++ R+    N V+ +AL+DMY+KCGSV  + ++
Sbjct: 314 PDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEI 373

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +     V + +M+VG +  G  +    LF+ +   GI+P++ TF+G+L  C+H G V
Sbjct: 374 FTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFV 433

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG Q  ++M R + + P  +HY C+VD+LGR G L+EA++L  ++ + P+   ++WG L
Sbjct: 434 NEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNA--VVWGAL 491

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   +LH    +A +   +LIE     +  YV LSN Y+    WE    +RS MK   I 
Sbjct: 492 LGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQ 551

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K   CSW+EI    + F  G+       ++ + L EL R++K  G+V   T  V  D+E+
Sbjct: 552 KIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV-PTTEFVLFDIEE 610

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +E  +G HSE+LA+AFGLI+ P    IR++KNLR+C DCHD  KLIS I +R+ ++RD
Sbjct: 611 EEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRD 670

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFH F +GSCSC D+W
Sbjct: 671 TNRFHTFIDGSCSCRDYW 688



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 196/349 (56%), Gaps = 2/349 (0%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  +H+ +L+     + + LN ++ C +    T  ++ +F ++ EPN+  + +++ G ++
Sbjct: 32  LKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
                 A+ L+  M G    PN FT   V+KAC+   D+  G +IH+ +   G+ +++ V
Sbjct: 92  KDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFV 151

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +SL+ +Y KC++ D A +VFD +  +NVVSWT+II  +  +    EA+  F++   +  
Sbjct: 152 KTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL-LEMG 210

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P+   L  V+ ACA LG   SG+     +  SG   N  VA++L+DMY KCG++  ++
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ +    +V++++MI G A  GL + +LDLF +M S  +KP+  T VGVL AC+  G
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            +D GI    S+  +   + +    T ++DM  + G + +A+++  +++
Sbjct: 331 ALDLGIW-ASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/526 (39%), Positives = 324/526 (61%), Gaps = 5/526 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR LFD M EP++V + S+  GY     P     LF ++L + + P+ +TF +++KAC++
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
              L  G+Q+H      G   N+ VC +L++MY +C DVD AR VFD +    VV + ++
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  +A+  + +EAL +FRE   ++  +PN+  L SV+++CA LG L  GK  H    + G
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNL-KPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHG 262

Query: 261 -CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
            C++  V  +AL+DM+AKCGS++ +  +F  +       +++MIV  A +G    S+ +F
Sbjct: 263 FCKYVKV-NTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMF 321

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
             M S  ++P+++TF+G+L+ACSH+GLV+EG ++   M  ++GI+P  KHY  +VD+LGR
Sbjct: 322 ERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGR 381

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
            G L++AY+    + + P   P+LW  LL+A   H  +++A + S +++E +      YV
Sbjct: 382 AGHLEDAYEFIDKLPISP--TPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYV 439

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLS 499
            LSN YA   +WE V SLR  MK     K PGCS +E+ +  + F++G+ +    +++  
Sbjct: 440 ILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHR 499

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
            L E+ +++K  GYV   + +V  D+ D+ +E  +  HSE+LA+AFGL++ P G TIR++
Sbjct: 500 ALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVV 559

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+CRDCH   KLIS I  R  V+RDV RFHHF +G CSC DFW
Sbjct: 560 KNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 152/288 (52%), Gaps = 13/288 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K G   N +    LIN Y   +    AR +FD ++EP VV Y +++ GY    +
Sbjct: 153 LHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNR 212

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL LF++M G  + PNE T  +V+ +C++L  L  GK IH + +  GF   + V ++
Sbjct: 213 PNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTA 272

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DM+ KC  +D A  +F+ M  ++  +W+++IVA+A + Q   ++ MF     ++  +P
Sbjct: 273 LIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENV-QP 331

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA----SALVDMYAKCGSVNYS 284
           ++     ++NAC+  G +  G+     +V    EF  V +     ++VD+  + G +  +
Sbjct: 332 DEITFLGLLNACSHTGLVEEGREYFSWMVH---EFGIVPSIKHYGSMVDLLGRAGHLEDA 388

Query: 285 DKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
            +  +++  +P+ + +  ++   + +     +L+L  ++  R ++ +D
Sbjct: 389 YEFIDKLPISPTPMLWRILLAACSSHN----NLELAEKVSERILELDD 432


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 321/538 (59%), Gaps = 4/538 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI+ YV+ +    AR++FD + + +++S+T+++A YI+       + LF KMLG  ++PN
Sbjct: 268 LIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPN 327

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  +++K C     L  GK +H      GF  +LV+ ++ +DMYGKC DV  AR VFD
Sbjct: 328 EITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFD 387

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
               ++++ W+++I ++AQN    EA ++F         RPN+  + S++  CA  G L 
Sbjct: 388 SFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT-GCGIRPNERTMVSLLMICAKAGSLE 446

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK  H  + + G + + ++ ++ VDMYA CG ++ + ++F   ++  +  + +MI G A
Sbjct: 447 MGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFA 506

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G G  +L+LF EM + G+ PND+TF+G LHACSHSGL+ EG +    M  ++G  P  
Sbjct: 507 MHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKV 566

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HY C+VD+LGR G LDEA++L KS+ + P+    ++G+ L+A +LH  + +   A+ Q 
Sbjct: 567 EHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIA--VFGSFLAACKLHKNIKLGEWAAKQF 624

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           +      +   V +SN YA A  W +V  +R  MK  GI KEPG S +E+    + F  G
Sbjct: 625 LSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMG 684

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +       +V  ++ E+  K+++ GY       V  +++ E +   +  HSE+LA+A+GL
Sbjct: 685 DREHPDAKKVYEMIDEMREKLEDAGYT-PDVSCVLHNIDKEKKVSALNYHSEKLAMAYGL 743

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS   G+ IRI+KNLR+C DCH+  KL+S I  R+ +VRD NRFHHF+ GSCSC D+W
Sbjct: 744 ISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K+GF  + F  N LI  Y  +    +AR LFD++   +VVS+++++  Y   G 
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVC 166
              AL L + M    V P+E    ++    + LADL  GK +H ++   G   +  + +C
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLC 265

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+DMY KC ++  ARRVFD +   +++SWT++I A+      +E + +F +   +   
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGM- 324

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+  + S++  C + G L  GK+ H   +R+G   + V+A+A +DMY KCG V  +  
Sbjct: 325 FPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARS 384

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+   +  ++ +++MI   A+      + D+F  M   GI+PN+ T V +L  C+ +G 
Sbjct: 385 VFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGS 444

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWG 405
           ++ G + + S   K GI  D    T  VDM    G +D A++L A++   D      +W 
Sbjct: 445 LEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS----MWN 499

Query: 406 TLLSASRLHGRVDIAVE 422
            ++S   +HG  + A+E
Sbjct: 500 AMISGFAMHGHGEAALE 516



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 194/386 (50%), Gaps = 14/386 (3%)

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           E    N   ++ L+  YI    P  A  ++  M G     + F   +V+KAC ++   + 
Sbjct: 83  ESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLL 142

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G+++H  +   GF  ++ VC++L+ MY +   +  AR +FD +  ++VVSW+++I ++ +
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFND 265
           +    EAL++ R+ +   R +P++  + S+ +  A L  L  GK  H  V+R+G C  + 
Sbjct: 203 SGLLDEALDLLRDMHVM-RVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSG 261

Query: 266 V-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
           V + +AL+DMY KC ++ Y+ +VF+ +S  S++++T+MI            + LF +M+ 
Sbjct: 262 VPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG 321

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G+ PN++T + ++  C  +G ++ G + L +   + G        T  +DM G+ G + 
Sbjct: 322 EGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVR 380

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV----DIAVEASNQLIESNQQVANAYVT 440
            A  +  S +       ++W  ++S+   +  +    DI V  +   I  N++     V+
Sbjct: 381 SARSVFDSFK---SKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERT---MVS 434

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGI 466
           L    A AG  E    + S + + GI
Sbjct: 435 LLMICAKAGSLEMGKWIHSYIDKQGI 460


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 330/560 (58%), Gaps = 7/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI--NM 106
           +HS +++SG + +      L++ Y +    Q AR++FD M E NV+S+T+L+ GY+    
Sbjct: 284 LHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGG 343

Query: 107 GQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           G  + A+ +F  ML    V PN FTF+ V+KAC+ L D   G+Q+H      G      V
Sbjct: 344 GYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCV 403

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            + LV +Y K   ++ AR+ FD++  +N+VS T +   + ++   +   ++ RE  Y   
Sbjct: 404 GNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGS 463

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              +    AS+++  A +G +  G+  H +VV+ G   +  V +AL+ MY+KCG+   + 
Sbjct: 464 G-VSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAAL 522

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VFN + + +V+T+TS+I G AK+G    +L+LF  M+  G+KPNDVT++ VL ACSH G
Sbjct: 523 QVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVG 582

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+DE  +H  SM   +GI+P  +HY C+VD+LGR+G L EA +   S+  D D   L+W 
Sbjct: 583 LIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADA--LVWR 640

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           T L + R+H    +   A+  ++E        Y+ LSN YA  G WE+V ++R  MK+  
Sbjct: 641 TFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQ 700

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           I KE G SW+E+ +Q + F+ G+ L  +  ++   L EL  K+K  GYV   T  V  DV
Sbjct: 701 ITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYV-PNTDFVLHDV 759

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           EDE +E+ +  HSE+LA+AF LIS P    IR+ KNLR+C DCH   K IS +  R+ VV
Sbjct: 760 EDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVV 819

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHH ++G+CSC D+W
Sbjct: 820 RDANRFHHMKDGTCSCNDYW 839



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 185/350 (52%), Gaps = 11/350 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINM 106
           +H ++  S    +T  LN LI  Y +      A  +F  M     +VVSY+S+++ + N 
Sbjct: 74  LHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANN 133

Query: 107 GQPQIALLLF-QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG-FQYNLV 164
                A+ +F Q +L + V+PNE+ F  VI+AC       TG  +   +   G F  ++ 
Sbjct: 134 RNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVC 193

Query: 165 VCSSLVDMYGK-CN--DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           V   L+DM+ K C+  D++ AR+VFD M  +NVV+WT +I   AQ     EA+++F E  
Sbjct: 194 VGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEML 253

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             S   P++  L  +I+ CA +  L  GK  H  V+RSG   +  V  +LVDMYAKCG V
Sbjct: 254 VSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLV 313

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLG--RFSLDLFNEMISR-GIKPNDVTFVGVL 338
             + KVF+ +   +V+++T+++ G  + G G  R ++ +F+ M+ + G+ PN  TF GVL
Sbjct: 314 QEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVL 373

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            AC+     D G Q +     K G+         +V +  ++GR++ A K
Sbjct: 374 KACASLPDFDFGEQ-VHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARK 422



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T + ++K C    +   GK +H  + T     + ++ +SL+ +Y K ND   A  +F  M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 190 --GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
               R+VVS++SII   A N    +A+EMF +   Q    PN++   +VI AC   G   
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 248 SGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGS---VNYSDKVFNRISNPSVVTYTSMI 303
           +G    G V+++G   + V V   L+DM+ K  S   +  + KVF+++   +VVT+T MI
Sbjct: 174 TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 304 VGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
              A+YG    ++DLF EM +S G  P+  T  G++  C+    +  G + L S   + G
Sbjct: 234 TRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLG-KELHSWVIRSG 292

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ++ D      +VDM  + G + EA K+
Sbjct: 293 LVLDLCVGCSLVDMYAKCGLVQEARKV 319



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 123/283 (43%), Gaps = 21/283 (7%)

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP--SVVTYTSMIVGA 306
           GK+ H  +  S    + ++ ++L+ +Y+K      +  +F  + N    VV+Y+S+I   
Sbjct: 71  GKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCF 130

Query: 307 AKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
           A       ++++F++++ + G+ PN+  F  V+ AC   G    G+  L     K G   
Sbjct: 131 ANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLC-LFGFVLKTGYFD 189

Query: 366 DAKHYTC-VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
                 C ++DM  +   L +     K      +   + W  +++    +G  D A++  
Sbjct: 190 SHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLF 249

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENV---HSLRSEMKRTGIHKE--PGCSWVEIRD 479
            +++ S+  V + + TL+   ++  E + +     L S + R+G+  +   GCS V++  
Sbjct: 250 LEMLVSSGYVPDRF-TLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDM-- 306

Query: 480 QTYAFYAGNALFERGSEVLSLLRE---LERKMKERGYVGGKTG 519
                YA   L +   +V   +RE   +       GYV G  G
Sbjct: 307 -----YAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGG 344


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 327/561 (58%), Gaps = 9/561 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  LK G + + F      + Y +      AR +FDEM   N+ ++ + M+  +  G+
Sbjct: 131 LHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGR 190

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+  F+K L     PN  TF   + AC+ +  L  G+Q+H  I    ++ ++ V + 
Sbjct: 191 CLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNG 250

Query: 169 LVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           L+D YGKC D+  +  VF  +G   RNVVSW S++ A  QN +   A  +F     +   
Sbjct: 251 LIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVF--LQARKEV 308

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P   M++SV++ACA LG L  G+  H + +++  E N  V SALVD+Y KCGS+ Y+++
Sbjct: 309 EPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQ 368

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVGVLHACSHS 344
           VF  +   ++VT+ +MI G A  G    +L LF EM S   GI  + VT V VL ACS +
Sbjct: 369 VFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRA 428

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G V+ G+Q  +SM  +YGI P A+HY CVVD+LGR+G +D AY+  K + + P     +W
Sbjct: 429 GAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTIS--VW 486

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G LL A ++HG+  +   A+ +L E +   +  +V  SN  A AG WE    +R EM+  
Sbjct: 487 GALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDI 546

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           GI K  G SWV ++++ + F A ++  E+ SE+ ++L +L  +MK+ GYV     L   D
Sbjct: 547 GIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVP-DANLSLFD 605

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           +E+E +   V  HSE++ALAFGLI++P+G+ IRI KNLR+C DCH   K IS IV R+ +
Sbjct: 606 LEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREII 665

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD NRFH F++G CSC D+W
Sbjct: 666 VRDNNRFHRFKDGWCSCKDYW 686



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 214/432 (49%), Gaps = 17/432 (3%)

Query: 48  SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYIN 105
           +VH+ IL++      +F  NHL+N Y +L     A QL   +  P  VV++TSL++G ++
Sbjct: 28  AVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSA-QLVLSLTNPRTVVTWTSLISGCVH 86

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             +   ALL F  M    V PN+FTF  V KA + L   +TGKQ+H      G   ++ V
Sbjct: 87  NRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFV 146

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             S  DMY K      AR +FD M  RN+ +W + +    Q+ +  +A+  F++F     
Sbjct: 147 GCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKF-LCVD 205

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             PN     + +NACA +  L  G+  HG +VRS    +  V + L+D Y KCG +  S+
Sbjct: 206 GEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSE 265

Query: 286 KVFNRISNP--SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
            VF+RI +   +VV++ S++    +      +  +F +   + ++P D     VL AC+ 
Sbjct: 266 LVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAE 324

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G ++ G + + ++  K  +  +    + +VD+ G+ G ++ A ++ + +   P+   + 
Sbjct: 325 LGGLELG-RSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREM---PERNLVT 380

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL---AGEWENVHSLRSE 460
           W  ++      G VD+A+    ++   +  +A +YVTL +  +    AG  E    +   
Sbjct: 381 WNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFES 440

Query: 461 MK-RTGIHKEPG 471
           M+ R GI  EPG
Sbjct: 441 MRGRYGI--EPG 450


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/547 (39%), Positives = 323/547 (59%), Gaps = 10/547 (1%)

Query: 66  NHLINCYVRLKK-TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM---LG 121
           N LI+   R  +    AR+LFD M + +  ++++L++GY   GQP+ AL L+++M    G
Sbjct: 98  NTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPG 157

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY---NLVVCSSLVDMYGKCND 178
           N    NEFT ++ + A +       G+++H H+   G      + V+ S+L DMY KC  
Sbjct: 158 NDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGR 217

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD ARRVFD M  R+ VSWT+++  +    +G E   +F         RPN+   A V+ 
Sbjct: 218 VDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLR 277

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           ACA       G+  HG + +SG   +    SAL+ MY+KCG +  + +VF  ++ P +V+
Sbjct: 278 ACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVS 337

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +T++I G A+ G    +L  F+  +  GIKP+ VTFVGVL AC+H+GLVD+G++   S+ 
Sbjct: 338 WTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIK 397

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            +Y I   A HY CV+D+L R+G+ + A K+  ++ V P+    LW +LL   R+H  V 
Sbjct: 398 EQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPN--KFLWASLLGGCRIHKNVG 455

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  L E   +    YVTL+N YA  G ++ V  +R  M+  GI K P  SW+E+ 
Sbjct: 456 LARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVG 515

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
            + + F  G+    +  E+ +LL++L  KM E GYV      V  DVEDE +E+ +G HS
Sbjct: 516 RRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYV-ADIEFVLHDVEDEQKEQDIGYHS 574

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           ERLA+AFG+I+ P+G  I++ KNLR+C DCH   KLIS IV+RD +VRD NRFHHF++G 
Sbjct: 575 ERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGI 634

Query: 599 CSCGDFW 605
           CSC D+W
Sbjct: 635 CSCRDYW 641



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + KSG   + F  + L+  Y +      A ++F+ M +P++VS+T++++GY   GQ
Sbjct: 291 VHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQ 350

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI-HTHIETFGFQYNLVVCS 167
           P+ AL  F   L + + P+  TF  V+ AC+    +  G +I H+  E +  ++     +
Sbjct: 351 PEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYA 410

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
            ++D+  +    + A ++   M  + N   W S++
Sbjct: 411 CVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLL 445


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 339/590 (57%), Gaps = 12/590 (2%)

Query: 24  RSSCHTKAH-----FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRL 75
           R  CH         ++  L+ C  L +L     VH+ I   G  S+      L+  Y + 
Sbjct: 118 REMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKC 177

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
                AR++FD ++  +++S+T ++  Y   G  + A  L  +M      PN  T+ +++
Sbjct: 178 GSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL 237

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
            AC+    L   K++H H    G + ++ V ++LV MY K   +D AR VFD M  R+VV
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVV 297

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SW  +I A A++ +GHEA ++F +   +   +P+  M  S++NACAS G L   K  H  
Sbjct: 298 SWNVMIGAFAEHGRGHEAYDLFLQMQTEGC-KPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
            + SG E +  V +ALV MY+K GS++ +  VF+R+   +VV++ +MI G A++GLG+ +
Sbjct: 357 ALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDA 416

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L++F  M + G+KP+ VTFV VL ACSH+GLVDEG     +M + YGI PD  H  C+VD
Sbjct: 417 LEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVD 476

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +LGR GRL EA     ++ VDPD     WG LL + R +G V++    + + ++ + + A
Sbjct: 477 LLGRAGRLMEAKLFIDNMAVDPDEAT--WGALLGSCRTYGNVELGELVAKERLKLDPKNA 534

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV LSN YA AG+W+ V  +R+ M+  GI KEPG SW+E+ ++ + F   ++      
Sbjct: 535 ATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECK 594

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E+     ++  K+K  GY+   T LV  +   + +E  +  HSE+LA+ +GL+  P G  
Sbjct: 595 EINESKDKVIEKIKAEGYI-PDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNP 653

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IR+ KNLR+C DCH   KLIS +  R+ +VRD NRFHHF++G CSCGD+W
Sbjct: 654 IRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 221/393 (56%), Gaps = 8/393 (2%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +++ L+ C   K L++   VH  I+KS    N   +N+L++ Y+   + Q AR +FD ++
Sbjct: 31  YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + +  S+ +++AGY+     + A+ LF++M    V PN  T+  ++KAC+ L+ L  GK+
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  I   G + ++ V ++L+ MYGKC  ++ ARR+FD +   +++SWT +I A+AQ+  
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G EA  +  +   Q   +PN     S++NACAS G L   K  H   + +G E +  V +
Sbjct: 211 GKEAYRLMLQME-QEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGT 269

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALV MYAK GS++ +  VF+R+    VV++  MI   A++G G  + DLF +M + G KP
Sbjct: 270 ALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKP 329

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + + F+ +L+AC+ +G + E ++ +       G+  D +  T +V M  ++G +D+A  +
Sbjct: 330 DAIMFLSILNACASAGAL-EWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVV 388

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
              ++V      + W  ++S    HG    A+E
Sbjct: 389 FDRMKVR---NVVSWNAMISGLAQHGLGQDALE 418



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 192/385 (49%), Gaps = 8/385 (2%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           A+++    L   +  + F +  V+K C    DL+  KQ+H  I     + N  V ++L+ 
Sbjct: 12  AIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLH 71

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           +Y +C  +  AR VFD +  ++  SW ++I  + ++    +A+ +FRE  ++   +PN  
Sbjct: 72  VYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV-QPNAG 130

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
               ++ ACASL  L  GK  H  +   G E +  V +AL+ MY KCGS+N + ++F+ +
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
            N  ++++T MI   A+ G G+ +  L  +M   G KPN +T+V +L+AC+  G + + +
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL-KWV 249

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
           + +       G+  D +  T +V M  ++G +D+A  +   ++V      + W  ++ A 
Sbjct: 250 KRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRD---VVSWNVMIGAF 306

Query: 412 RLHGRVDIAVEASNQL-IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE- 469
             HGR   A +   Q+  E  +  A  ++++ N  A AG  E V  +      +G+  + 
Sbjct: 307 AEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDV 366

Query: 470 -PGCSWVEIRDQTYAFYAGNALFER 493
             G + V +  ++ +      +F+R
Sbjct: 367 RVGTALVHMYSKSGSIDDARVVFDR 391


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 340/559 (60%), Gaps = 8/559 (1%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H E+LK+GF S+ F +N LI  Y        A  +FDE    +VV++  ++  ++N G  
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 110 QIALLLFQKM--LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + A  L  +M  L NL  P+E T  +++ AC+ L +L  GK +H++ +  G   NL V +
Sbjct: 194 EKAFDLLDEMTKLDNLR-PDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNN 252

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +++DMY KC+D++ A+ VF+ +  ++V+SWTS++   A++    EAL +F++    ++  
Sbjct: 253 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQL-NKIE 311

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            ++  L  V++ACA  G L  GK  H ++ +     + V+ +ALVDMYAKCGS++ + +V
Sbjct: 312 LDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 371

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F R+   +V T+ ++I G A +G G  ++ LF++M    + P+DVTF+ +L ACSH+GLV
Sbjct: 372 FRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLV 431

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           DEG+    +M  K+ I P  +HY CVVD+L R  ++D+A    +++ +  +   +LW TL
Sbjct: 432 DEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS--VLWATL 489

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R  G  D+A +   ++IE        YV LSN YA   +W++   LR +MK  GI 
Sbjct: 490 LGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIE 549

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK-ERGYVGGKTGLVFVDVE 526
           K PGCSW+E+    + F AG+    +  ++ +++ E+ R++  + G+V G   ++F D+E
Sbjct: 550 KTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLF-DIE 608

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  + LHSE+LA+A GLIS P G  IRI+KNLR+C DCH   K+ S +  R+ V R
Sbjct: 609 EEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVAR 668

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHF+ GSCSC DFW
Sbjct: 669 DRSRFHHFKEGSCSCMDFW 687



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 198/391 (50%), Gaps = 8/391 (2%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEPNVVSY 96
           C  +      H+ +L++  L N    + LI+ ++ L  +     AR+LF +M  P+    
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLIS-FLALSHSGDLNYARKLFTQMQNPDPFIC 79

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY     P  A+ L+  M+   V  + +T+  V+ AC+ L  +  G++ H  +  
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  +L V ++L+  Y  C     A  VFD    R+VV+W  +I AH       +A ++
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDL 199

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
             E       RP++  + S++ ACA LG L  GK  H      G + N  V +A++DMY 
Sbjct: 200 LDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC 259

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KC  +  + +VFNRI    V+++TSM+ G AK G  + +L LF +M    I+ +++T VG
Sbjct: 260 KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVG 319

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL AC+ +G +D+G +++  +  K+ I  D    T +VDM  + G +D A ++ + ++V 
Sbjct: 320 VLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                  W  L+    +HG  + A+   +Q+
Sbjct: 379 ---NVFTWNALIGGLAMHGHGEDAISLFDQM 406



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 109/201 (54%), Gaps = 1/201 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS   + G   N    N +++ Y +    + A+++F+ + E +V+S+TS+++G    G 
Sbjct: 235 LHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 294

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            Q AL LFQKM  N +  +E T   V+ AC+    L  GK IH  I+ F    +LV+ ++
Sbjct: 295 FQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETA 354

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  +D A +VF  M  RNV +W ++I   A +  G +A+ +F +  +  +  P
Sbjct: 355 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEH-DKLMP 413

Query: 229 NQHMLASVINACASLGRLVSG 249
           +     +++ AC+  G +  G
Sbjct: 414 DDVTFIALLCACSHAGLVDEG 434


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/635 (36%), Positives = 361/635 (56%), Gaps = 50/635 (7%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLI-------SLASVHSEILKSGFL--SNTF 63
           L A+SL  QN+ S+  T    +   ++   LI        +  +H+ IL+   L      
Sbjct: 6   LLATSLP-QNQLSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYP 64

Query: 64  TLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
            LN  L   Y    K + +  LF + ++P++  +T+ +      G    A LL+ ++L +
Sbjct: 65  VLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSS 124

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + PNEFTF++++K+CS      +GK IHTH+  FG   +  V + LVD+Y K  DV  A
Sbjct: 125 EINPNEFTFSSLLKSCSTK----SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSA 180

Query: 183 RRVFDLMG------------C-------------------RNVVSWTSIIVAHAQNAQGH 211
           ++VFD M             C                   R++VSW  +I  +AQ+   +
Sbjct: 181 QKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPN 240

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +AL +F++   + + +P++  + + ++AC+ +G L +G+  H  V  S    N  V + L
Sbjct: 241 DALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGL 300

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN 330
           +DMY+KCGS+  +  VFN      +V + +MI G A +G  + +L LFNEM    G++P 
Sbjct: 301 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPT 360

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           D+TF+G L AC+H+GLV+EGI+  +SM ++YGI P  +HY C+V +LGR G+L  AY+  
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           K++ +D D   +LW ++L + +LHG   +  E +  LI  N + +  YV LSN YA  G+
Sbjct: 421 KNMNMDADS--VLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGD 478

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           +E V  +R+ MK  GI KEPG S +EI ++ + F AG+    +  E+ ++LR++  ++K 
Sbjct: 479 YEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKS 538

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GYV   T  V  D+E+  +E+ + +HSERLA+A+GLIS   G  ++I KNLR+C DCH 
Sbjct: 539 HGYV-PNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHT 597

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           V KLIS I  R  V+RD NRFHHF +GSCSCGDFW
Sbjct: 598 VTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/573 (37%), Positives = 327/573 (57%), Gaps = 8/573 (1%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L  +++   +H  ++K G   + F  N LIN Y +    + AR+ F +M   +V
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S++A Y     P  A   F KM  N   P+  T  ++    +   D    + +H  
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 154 IETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           I   G+   ++V+ +++VDMY K   +D A +VF+++  ++V+SW ++I  +AQN    E
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASE 502

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           A+E+++         PNQ    S++ A A +G L  G   HG V+++    +  VA+ L+
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLI 562

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           D+Y KCG +  +  +F ++   S VT+ ++I     +G    +L LF EM+  G+KP+ V
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFV +L ACSHSG V+EG +    + ++YGI P  KHY C+VD+LGR G L+ AY   K 
Sbjct: 623 TFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKD 681

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + PD    +WG LL A R+HG +++   AS++L E + +    YV LSN YA  G+WE
Sbjct: 682 MPLQPDAS--IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWE 739

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +RS  +  G+ K PG S +E+  +   FY GN    +  E+   LR L  KMK  G
Sbjct: 740 GVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLG 799

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y+   +  V  DVE++ +E I+  HSERLA+AFG+IS P    IRI KNLR+C DCH+  
Sbjct: 800 YIPDYS-FVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNAT 858

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS I +R+ VVRD NRFHHF++G CSCGD+W
Sbjct: 859 KFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 202/399 (50%), Gaps = 7/399 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C  L+    +H    K GF  N F    LI+ Y R   T +AR LFD+M   +
Sbjct: 221 FPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 280

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + S+ ++++G I  G    AL +  +M    +  N  T  +++  C  L D+ T   IH 
Sbjct: 281 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHL 340

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           ++   G +++L V ++L++MY K  +++ AR+ F  M   +VVSW SII A+ QN     
Sbjct: 341 YVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVT 400

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV-ASAL 271
           A   F +       +P+   L S+ +  A      + +  HG ++R G    DVV  +A+
Sbjct: 401 AHGFFVKMQLNGF-QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAV 459

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN 330
           VDMYAK G ++ + KVF  I    V+++ ++I G A+ GL   +++++  M   + I PN
Sbjct: 460 VDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN 519

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V +L A +H G + +G++ +     K  +  D    TC++D+ G+ GRL +A  L 
Sbjct: 520 QGTWVSILPAYAHVGALQQGMR-IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLF 578

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             +   P    + W  ++S   +HG  +  ++   ++++
Sbjct: 579 YQV---PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 614



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 209/422 (49%), Gaps = 10/422 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +G + + F    L+N Y  L    ++R  FD++ + +V ++ S+++ Y++ G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 109 PQIAL-LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
              A+   +Q +L + + P+ +TF  V+KAC  L D   G++IH      GFQ+N+ V +
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAA 254

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MY +      AR +FD M  R++ SW ++I    QN    +AL++  E   +   +
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-K 313

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   + S++  C  LG + +  + H  V++ G EF+  V++AL++MYAK G++  + K 
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F ++    VV++ S+I    +      +   F +M   G +P+ +T V +    + S   
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
                    + R+  ++ D      VVDM  + G LD A+K+ + I V      + W TL
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK---DVISWNTL 490

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           ++    +G    A+E    + E  + + N   +V++   YA  G  +    +   + +T 
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTN 550

Query: 466 IH 467
           +H
Sbjct: 551 LH 552



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            K +H  +   G   ++ + + LV++Y    DV  +R  FD +  ++V +W S+I A+  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N   HEA+  F +    S  RP+ +    V+ AC   G LV G+  H    + G ++N  
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVF 251

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA++L+ MY++ G    +  +F+ +    + ++ +MI G  + G    +LD+ +EM   G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDE 385
           IK N VT V +L  C   G +   +  L  +Y  K+G+  D      +++M  + G L++
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAM--LIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 386 AYK 388
           A K
Sbjct: 370 ARK 372


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/611 (35%), Positives = 347/611 (56%), Gaps = 40/611 (6%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK---TQVARQLFD 86
           K   ++ L  CK L  L  +H++ + +G  S+ F  + +++ +  L        AR LF 
Sbjct: 35  KYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILS-FAALSPHGSIPYARFLFY 93

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLI 145
            + +P++    +L+  Y     P  A++ + +M   ++V+P+  TF  ++KACS +  L 
Sbjct: 94  RIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLR 153

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN-------------DVDGA---------- 182
            G+ IH+H+   G+   + V + LV MY  C              + DGA          
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213

Query: 183 --------RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
                   RR+F+ M  R+VVSW+ +I  + Q ++  E L +F++     +  PN+ +L 
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDM-MGEKIEPNESVLV 272

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           + ++ACA LG +  G+     + R        + +AL+DMY+KCGSV  + +VF+++   
Sbjct: 273 NALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEK 332

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           +V+ +++MI G A  G G+ +L+LF++M  +G+KPN+VTF+G+L+ACSHS LVDEG    
Sbjct: 333 NVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFF 392

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            SM   YG+ P+A H+ C+VD+ GR G LD+A  + KS+   P+    +WG LL+A R+H
Sbjct: 393 HSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSA--IWGALLNACRIH 450

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G  ++  +   +L+E +      YV LSN YA  G W+ V  LR  M+   + K PGCS+
Sbjct: 451 GDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSF 510

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +++ D  + F AG++   +   + + L E+ +++K  GY    TG V +D+++E +E  +
Sbjct: 511 IDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGY-KPDTGQVLLDMDEEEKETAL 569

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSE+LA+AFGLI    G TIRI KNLR+C DCH   KLIS I  R+ +VRD  RFHHF
Sbjct: 570 CHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHF 629

Query: 595 RNGSCSCGDFW 605
           R+GSCSC DFW
Sbjct: 630 RDGSCSCMDFW 640


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 336/597 (56%), Gaps = 39/597 (6%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           + +  VH +  + G +S+ F  N LI+ Y + K  + AR++FD+++  +VVS+TSL + Y
Sbjct: 181 LRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 240

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +  G P+  + +F++M  + V PN  T ++++ AC+ L DL +GK+IH      G   NL
Sbjct: 241 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL 300

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH------------------- 204
            VCS+LV +Y KC  V  AR VFDLM  R+VVSW  ++ A+                   
Sbjct: 301 FVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 360

Query: 205 ----------------AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
                            +N +  EA+EMFR+       +PN+  ++S++ AC+    L  
Sbjct: 361 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGF-KPNEITISSILPACSFSENLRM 419

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  H  V R     +    +AL+ MYAKCG +N S  VF+ +    VV + +MI+  A 
Sbjct: 420 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 479

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +G G+ +L LF++M+   ++PN VTF GVL  CSHS LV+EG+Q  +SM R + + PDA 
Sbjct: 480 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDAN 539

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           HY+CVVD+  R GRL+EAYK  + + ++P      WG LL+A R++  V++A  ++ +L 
Sbjct: 540 HYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASA--WGALLAACRVYKNVELAKISAKKLF 597

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
           E        YV+L N    A  W     +R  MK  GI K PGCSW+++ ++ + F  G+
Sbjct: 598 EIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGD 657

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
                  ++ + L EL  KMK  GY    T  V  D++ E + E +  HSE+LA+AFG++
Sbjct: 658 KSNIESDKIYNFLDELVEKMKMAGY-KPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGIL 716

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++    TIR+ KNLR+C DCH+  K +S +V    VVRD  RFHHF+NG+CSC D W
Sbjct: 717 NLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 180/373 (48%), Gaps = 46/373 (12%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           ARQLFD + +P+  + ++L++     G    A+ ++  +    + P+   F    KAC++
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 176

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             D +  K++H      G   ++ V ++L+  YGKC  V+GARRVFD +  R+VVSWTS+
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
              + +     + +++FRE  + S  +PN   ++S++ ACA L  L SGK  HG  VR G
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGW-SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 295

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV----------------------- 297
              N  V SALV +YAKC SV  +  VF+ + +  VV                       
Sbjct: 296 MVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFL 355

Query: 298 ------------TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
                       T+ ++I G  + G    ++++F +M   G KPN++T   +L ACS S 
Sbjct: 356 KMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSE 415

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD---EAYKLAKSIQVDPDGGPL 402
            +  G +    ++R +  + D    T ++ M  + G L+     + + +   V      +
Sbjct: 416 NLRMGKEIHCYVFRHWK-VGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV------V 468

Query: 403 LWGTLLSASRLHG 415
            W T++ A+ +HG
Sbjct: 469 AWNTMIIANAMHG 481



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 149/323 (46%), Gaps = 48/323 (14%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T +  +    E K L S   +H   ++ G + N F  + L++ Y +    + AR +FD M
Sbjct: 267 TVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM 326

Query: 89  LEPNVVSYTSLMAGY-----------------------------------INMGQPQIAL 113
              +VVS+  ++  Y                                   +  G+ + A+
Sbjct: 327 PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAV 386

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
            +F+KM      PNE T ++++ ACS   +L  GK+IH ++       +L   ++L+ MY
Sbjct: 387 EMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMY 446

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            KC D++ +R VFD+M  ++VV+W ++I+A+A +  G EAL +F +    SR +PN    
Sbjct: 447 AKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM-LLSRVQPNSVTF 505

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA------SALVDMYAKCGSVNYSDKV 287
             V++ C S  RLV      GV + +    + +V       S +VD+Y++ G +N + K 
Sbjct: 506 TGVLSGC-SHSRLVE----EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKF 560

Query: 288 FNRIS-NPSVVTYTSMIVGAAKY 309
              +   P+   + +++     Y
Sbjct: 561 IQGMPMEPTASAWGALLAACRVY 583



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+ +    G  N + ++F+ I  P   T +++I     +GL   ++ +++ +  RGIKP+
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 331 DVTFVGVLHACSHSG 345
              F+    AC+ SG
Sbjct: 164 MPVFLAAAKACAVSG 178


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/585 (39%), Positives = 336/585 (57%), Gaps = 8/585 (1%)

Query: 25  SSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           SS ++  H+   LQ C    SL +   +H  +L SG   +T     L++ Y        A
Sbjct: 57  SSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHA 116

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           R+LFD M + NV  +  L+  Y   G  ++A+ L++ M+   V P+ FT+   +KAC+ L
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAAL 176

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
            DL TG+++H  +    +  ++ VC+ LVDMY KC  VD AR VFD +  R+ V W S+I
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
            A+ QN +  EAL + R+        P    L S I+A A    L  G+  HG   R G 
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVG-PTIATLVSTISAAADAAALPRGRELHGFGWRRGF 295

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           +  D + ++LVDMYAK G V  +  +F ++    +V++ +MI G   +G    +L LFN+
Sbjct: 296 DRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNK 355

Query: 322 M-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           M +   + P+++TFVGVL AC+H G+V E  +    M   Y I P  +H+TC+VD+LG  
Sbjct: 356 MRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHA 415

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           GR +EAY L K + + PD G  +WG LL+  ++H  V++   A  +LIE   + A  YV 
Sbjct: 416 GRFEEAYDLIKGMPMQPDSG--IWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVL 473

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA +G+WE    +R  M   G+ K  GCSW+E++ +T+ F  G+A   R +E+   
Sbjct: 474 LSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEE 533

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L  LE  M + GY+   T  VF DV D+ +  ++  HSERLA+AFGLIS P G  + + K
Sbjct: 534 LERLEGLMSDAGYM-PDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTK 592

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH V KLIS IV+R+ ++RDVNR+HHF NG CSC D+W
Sbjct: 593 NLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/594 (36%), Positives = 351/594 (59%), Gaps = 17/594 (2%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQEC---KHLISLASVHSEILKSGF-LSNTFTLNHLINCY 72
           S T +N  + C      I  LQ C   KH   L  +H+  ++ G  L+N     HLI   
Sbjct: 10  STTPENPLTKC------ISLLQFCASSKH--KLKQIHAFSIRHGVSLNNPDMGKHLIFTI 61

Query: 73  VRLK-KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           V L      A  +F  +  PNV ++ +++ GY     P  A L +++M+ + V P+  T+
Sbjct: 62  VSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTY 121

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
             ++KA S   ++  G+ IH+     GF+  + V +SL+ +Y  C D + A +VF+LM  
Sbjct: 122 PFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKE 181

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R++V+W S+I   A N + +EAL +FRE + +  + P+   + S+++A A LG L  G+ 
Sbjct: 182 RDLVAWNSMINGFALNGRPNEALTLFREMSVEGVE-PDGFTVVSLLSASAELGALELGRR 240

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            H  +++ G   N  V ++L+D+YAKCG++  + +VF+ +S  + V++TS+IVG A  G 
Sbjct: 241 VHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGF 300

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
           G  +L+LF EM  +G+ P+++TFVGVL+ACSH G++DEG ++   M  + GIIP  +HY 
Sbjct: 301 GEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYG 360

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           C+VD+L R G + +AY+  +++ V P+   ++W TLL A  +HG + +   A + L+   
Sbjct: 361 CMVDLLSRAGLVKQAYEYIQNMPVQPNA--VIWRTLLGACTIHGHLGLGEIARSHLLNLE 418

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
            + +  YV LSN YA    W +V  +R  M + G+ K PG S VE+ ++ Y F  G+   
Sbjct: 419 PKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSH 478

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
            +  +V +LL ++   +K  GYV   T  V  D+E+E +E+ +  HSE++A+AF L++ P
Sbjct: 479 PQSQDVYALLEKITELLKLEGYV-PHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTP 537

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            G  IR+MKNLR+C DCH   KLI+ I +R+ V+RD +RFHHFR GSCSC D+W
Sbjct: 538 PGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 339/591 (57%), Gaps = 38/591 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVR----------LKKTQV------------------ 80
           VH+ +LK G   N F    LIN Y +            K+ +                  
Sbjct: 150 VHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGF 209

Query: 81  ---ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              AR+LFDE+   +VVS+ ++++GY   G+ + A+  F++M    V PN  T  +V+ A
Sbjct: 210 LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSA 269

Query: 138 CSML-ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           C+   + L  G  + + IE  G   N+ + + L+DMY KC D++ A  +F+ +  +NVVS
Sbjct: 270 CAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS 329

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W  +I  +   +   EAL +FR    QS   PN     S++ ACA+LG L  GK  H  V
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRM-MQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 257 VRSGCEFNDVVA--SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            ++     + VA  ++L+DMYAKCG +  + ++F+ ++  S+ T+ +MI G A +G    
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDT 448

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +L LF+ M S G  P+D+TFVGVL AC H+GL+  G ++  SM + Y + P   HY C++
Sbjct: 449 ALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMI 508

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+ GR G  DEA  L K++++ PDG   +W +LL A R+H R+++A   +  L E   + 
Sbjct: 509 DLFGRAGLFDEAETLVKNMEMKPDGA--IWCSLLGACRIHRRIELAESVAKHLFELEPEN 566

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
            +AYV LSN YA AG WE+V  +R+ +    + K PGCS +E+    + F  G+ +  + 
Sbjct: 567 PSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQS 626

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
           +E+  +L E++ ++++ G+V   T  V  D+++E +E ++  HSE+LA+AFGLIS   G 
Sbjct: 627 NEIYKMLDEIDMRLEKAGFV-PDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGT 685

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           TIRIMKNLR+C +CH   KLIS I  R+ + RD NRFHHF++GSCSC D+W
Sbjct: 686 TIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 202/426 (47%), Gaps = 51/426 (11%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLK-KTQVARQLFDEMLEPNVV 94
           L  CK L +L  +HS+I+K+G  +  F L+ LI  C V        A  LF  +  PN V
Sbjct: 35  LSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHV 94

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            +  ++ G  +   P +AL  +  M+ +   PNE+TF ++ K+C+ +     GKQ+H H+
Sbjct: 95  IWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHV 154

Query: 155 ETFGFQYNLVVCSSLVDMYGKCND-------------------------------VDGAR 183
              G ++N  V +SL++MY +  +                               +D AR
Sbjct: 155 LKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEAR 214

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            +FD +  R+VVSW ++I  +AQ+ +  EA+  F E   +++  PN   + SV++ACA  
Sbjct: 215 ELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR-RAKVTPNVSTMLSVLSACAQS 273

Query: 244 G-RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           G  L  G      +   G   N  + + L+DMY KCG +  +  +F +I + +VV++  M
Sbjct: 274 GSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVM 333

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-------QHLD 355
           I G       + +L LF  M+   I PNDVTF+ +L AC++ G +D G        +++ 
Sbjct: 334 IGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMK 393

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           SM     +      +T ++DM  + G L  A ++   +          W  ++S   +HG
Sbjct: 394 SMKNTVAL------WTSLIDMYAKCGDLAVAKRIFDCMNTKSLA---TWNAMISGFAMHG 444

Query: 416 RVDIAV 421
             D A+
Sbjct: 445 HTDTAL 450



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 126/309 (40%), Gaps = 40/309 (12%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM--YGKCNDVDGARRVFDLMG 190
           T++  C  L  L   KQIH+ I   G        S L++        D+  A  +F  + 
Sbjct: 33  TLLSNCKTLQTL---KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR 89

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
             N V W  +I   + +     ALE +      S   PN++   S+  +C  +     GK
Sbjct: 90  NPNHVIWNHMIRGLSSSESPFLALEYYVHM-ISSGTEPNEYTFPSIFKSCTKIRGAHEGK 148

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  V++ G E N  V ++L++MYA+ G +  +  VF++ S    V++T++I G A  G
Sbjct: 149 QVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG 208

Query: 311 L-----------------------------GRF--SLDLFNEMISRGIKPNDVTFVGVLH 339
                                         GR   ++  F EM    + PN  T + VL 
Sbjct: 209 FLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLS 268

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           AC+ SG   +    + S     G+  + +    ++DM  + G L+EA  L + IQ   D 
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ---DK 325

Query: 400 GPLLWGTLL 408
             + W  ++
Sbjct: 326 NVVSWNVMI 334


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/597 (36%), Positives = 337/597 (56%), Gaps = 6/597 (1%)

Query: 10  IFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI 69
           +  L  + ++    R + +  A  I    +   ++     H   LKSG + + +  N LI
Sbjct: 112 VLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALI 171

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNE 128
             Y R    + A  ++ E+   +V SY  ++ G +  G P  AL +  +M+   +VW N 
Sbjct: 172 CMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDN- 230

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            T+ T    CS L DL  G Q+H  +   G +Y+  V S+++DMYGKC ++  AR+VF+ 
Sbjct: 231 VTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNR 290

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           +  +NVVSWT+I+ A++QN    EAL  F E        PN++  A ++N+CA +  L  
Sbjct: 291 LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGL-LPNEYTFAVLLNSCAGISALGH 349

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK+ H  + +SG E + +V +AL++MY+K GS+  + KVF  +     +T+++MI G + 
Sbjct: 350 GKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSH 409

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +GLGR +L +F EM++    P+ VTFVGVL AC+H G V EG  +L+ + ++ GI P  +
Sbjct: 410 HGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVE 469

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           HYTC+V +L + GRLDEA    KS  V  D   + W TLLSA  +H    +  + +  ++
Sbjct: 470 HYTCIVGLLCKAGRLDEAENFMKSTPVKWD--VVAWRTLLSACHVHQNYGLGKKVAELVL 527

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
           + +      Y+ LSN YA A  W+ V  +R  M+   + KEPG SW+EIR+  + F +  
Sbjct: 528 QMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEG 587

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
                 +++   ++EL   ++  GYV      VF DVEDE + E V  HSE+LA+A+GL+
Sbjct: 588 KTHPESNQIYEKVQELLTMIRPMGYV-PDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLM 646

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             P G  IR++KNLRMC DCH   KLIS +  R  +VRD NRFH F +G CSC D+W
Sbjct: 647 KTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 226/454 (49%), Gaps = 19/454 (4%)

Query: 28  HTKAHFIQQLQ---ECKHLISLASVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVAR 82
           H   H IQ L+   + K+L     +H+ ++ +   +  N   +N LIN Y +  +  VAR
Sbjct: 23  HPLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVAR 82

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSML 141
            LFD M + NVVS+ +LMAGY + G     L LF+ M+  + + PNE+ FAT+I +CS  
Sbjct: 83  ILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDS 142

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
             ++ G Q H +    G  ++  V ++L+ MY + +DV GA  V+  +   +V S+  II
Sbjct: 143 GQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIII 202

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
               +N    EALE+      +     N     +    C+ L  L  G   H  + R+G 
Sbjct: 203 NGLLENGYPSEALEVLDRMVDECIVWDNV-TYVTAFGLCSHLKDLRLGLQVHCRMFRTGA 261

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           E++  V+SA++DMY KCG++  + KVFNR+   +VV++T+++   ++ G    +L+ F E
Sbjct: 262 EYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPE 321

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M   G+ PN+ TF  +L++C+    +  G + L +  +K G          +++M  ++G
Sbjct: 322 MEVDGLLPNEYTFAVLLNSCAGISALGHG-KLLHTRIKKSGFEDHIIVGNALINMYSKSG 380

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT- 440
            ++ A+K+   +        + W  ++     HG    A+    +++ + +     YVT 
Sbjct: 381 SIEAAHKVFLEMICRDS---ITWSAMICGLSHHGLGREALVVFQEMLAAKE--CPHYVTF 435

Query: 441 ---LSNTYALAGEWENVHSLRSEMKRTGIHKEPG 471
              LS    L    E  + L   MK+TGI  EPG
Sbjct: 436 VGVLSACAHLGSVQEGFYYLNQLMKQTGI--EPG 467


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 346/558 (62%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +K+G  S+    N L++ Y +    +    +FD+M + +VVS+T+++AG+   G 
Sbjct: 405 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+++    +  +    ++++ ACS L  + + K+IH++I   G   +LV+ + 
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNG 523

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +VD+YG+C +VD A R+F+L+  ++VVSWTS+I  +  N   +EALE+F     ++   P
Sbjct: 524 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK-ETGVEP 582

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   L S+++A ASL  L  GK  HG ++R G      +AS LVDMYA+CG++  S  VF
Sbjct: 583 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 642

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N I N  +V +TSMI     +G GR ++DLF  M    I P+ + FV VL+ACSHSGL++
Sbjct: 643 NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMN 702

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + L+SM  +Y + P  +HY C+VD+LGR   L+EAY+  K ++V+P     +W  LL
Sbjct: 703 EGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAE--VWCALL 760

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A ++H   ++   A+ +L+E + +    YV +SN Y+    W++V  +R  MK +G+ K
Sbjct: 761 GACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKK 820

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM-KERGYVGGKTGLVFVDVED 527
            PGCSW+E+ ++ + F A +    +  E+ S L ++  K+ KE GYV  +T  V  + ++
Sbjct: 821 NPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVA-QTKFVLHNAKE 879

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E + +++  HSERLA+A+G+++ P+G ++RI KNLR+C DCH+  KLIS   ER+ V+RD
Sbjct: 880 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 939

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFHHF+ G CSCGD W
Sbjct: 940 ANRFHHFKGGVCSCGDVW 957



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 9/386 (2%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  LQ C+    +     +H+ +LKS +  N F  N LI  Y R  K   A  +F  M 
Sbjct: 285 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 344

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + + +S+ S+++G++  G    AL  + +M      P+     ++I A +   + + G Q
Sbjct: 345 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ 404

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH +    G   +L V +SLVDMY K   +     +FD M  ++VVSWT+II  HAQN  
Sbjct: 405 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
              ALE+FRE   +  D  +  M++S++ AC+ L  + S K  H  ++R G   + V+ +
Sbjct: 465 HSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQN 522

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            +VD+Y +CG+V+Y+ ++F  I    VV++TSMI      GL   +L+LF+ M   G++P
Sbjct: 523 GIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP 582

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + ++ V +L A +    + +G +    + RK G + +    + +VDM  R G L+++  +
Sbjct: 583 DSISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNV 641

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHG 415
              I+   +   +LW ++++A  +HG
Sbjct: 642 FNFIR---NKDLVLWTSMINAYGMHG 664



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 194/377 (51%), Gaps = 7/377 (1%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYIN 105
           A VH   +K G++S  F  N ++  Y +      ARQLFD M E  +VVS+ S+++ Y +
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            GQ   AL LF +M    + PN +TF   ++AC   + +  G  IH  +    +  N+ V
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 319

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L+ MY +   +  A  +F  M   + +SW S++    QN   HEAL+ + E    + 
Sbjct: 320 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR-DAG 378

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P+   + S+I A A  G  + G   H   +++G + +  V ++LVDMYAK  S+ Y D
Sbjct: 379 QKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 438

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+++ +  VV++T++I G A+ G    +L+LF E+   GI  + +    +L ACS   
Sbjct: 439 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 498

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+   ++ + S   + G + D      +VD+ G  G +D A ++ + I+       + W 
Sbjct: 499 LIS-SVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFK---DVVSWT 553

Query: 406 TLLSASRLHGRVDIAVE 422
           +++S    +G  + A+E
Sbjct: 554 SMISCYVHNGLANEALE 570



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 191/376 (50%), Gaps = 7/376 (1%)

Query: 49  VHSEILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ ++ S  L N+ F    L+  Y +      A +LFD M    + ++ +++  Y+  G
Sbjct: 100 VHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNG 159

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P  +L L+++M  + +  +  TF  ++KAC +L D   G ++H      G+   + V +
Sbjct: 160 EPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVAN 219

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           S+V MY KCND++GAR++FD M  + +VVSW S+I A++ N Q  EAL +F E    S  
Sbjct: 220 SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL- 278

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN +   + + AC     +  G   H  V++S    N  VA+AL+ MYA+ G +  +  
Sbjct: 279 APNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAAN 338

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F  + +   +++ SM+ G  + GL   +L  ++EM   G KP+ V  + ++ A + SG 
Sbjct: 339 IFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGN 398

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
              G+Q + +   K G+  D +    +VDM  +   +     +   +   PD   + W T
Sbjct: 399 TLHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKM---PDKDVVSWTT 454

Query: 407 LLSASRLHGRVDIAVE 422
           +++    +G    A+E
Sbjct: 455 IIAGHAQNGSHSRALE 470



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 157/318 (49%), Gaps = 19/318 (5%)

Query: 126 PNEFT----FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS-LVDMYGKCNDVD 180
           P++F+    +++V++ C     L  G+Q+H H+ T    +N V  S+ LV MYGKC  + 
Sbjct: 72  PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A ++FD M  + + +W ++I A+  N +   +LE++RE    S    +      ++ AC
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRV-SGIPLDACTFPCILKAC 190

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS-VVTY 299
             L     G   HG+ ++ G      VA+++V MY KC  +N + ++F+R+     VV++
Sbjct: 191 GLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSW 250

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI----QHLD 355
            SMI   +  G    +L LF EM    + PN  TFV  L AC  S  + +G+      L 
Sbjct: 251 NSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 310

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           S Y     + +A     ++ M  R G++ EA  +  ++    D   + W ++LS    +G
Sbjct: 311 SSYYINVFVANA-----LIAMYARFGKMGEAANIFYNMD---DWDTISWNSMLSGFVQNG 362

Query: 416 RVDIAVEASNQLIESNQQ 433
               A++  +++ ++ Q+
Sbjct: 363 LYHEALQFYHEMRDAGQK 380


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 331/570 (58%), Gaps = 6/570 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           ++ C  L+    +H  +LK GF  + F    L++ Y R      AR+LFD+M   +  S+
Sbjct: 4   VKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSW 63

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            ++++GY   G    AL +  +M    V  +  T A+V+  C+ + D+++GK IH ++  
Sbjct: 64  NAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIK 123

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G ++ L V ++L++MY K   +  A++VF L+  ++VVSW ++I  +AQN    EA+E+
Sbjct: 124 HGLEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASEAIEV 182

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMY 275
           +          PNQ    S++ A + +G L  G   HG V+++ C ++DV V + L+DMY
Sbjct: 183 YLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN-CLYSDVFVGTCLIDMY 241

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
            KCG ++ +  +F ++   + V + +MI     +G G  +L+LF EM +  +KP+ +TFV
Sbjct: 242 GKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFV 301

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            +L ACSHSGLV +     + M  +YGI P  KHY C+VD+ GR G L+ A+   K + +
Sbjct: 302 SLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPI 361

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
            PD     WG LL+A R+HG +++   AS +L E + +    YV LSN YA  G+WE V 
Sbjct: 362 QPDASA--WGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVD 419

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +RS  +  G+ K PG S + + ++   FY GN    +  E+   LR+L  K+K  GYV 
Sbjct: 420 DVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVP 479

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
                V  DVE++ +E I+  HSERLA+A+G+IS      IRI KNLR+C DCH V K I
Sbjct: 480 DFC-FVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFI 538

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S I ER+ +VRD +RFHHF+ G+CSCGD+W
Sbjct: 539 SIITEREIIVRDSSRFHHFKGGTCSCGDYW 568


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 336/597 (56%), Gaps = 39/597 (6%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           + +  VH +  + G +S+ F  N LI+ Y + K  + AR++FD+++  +VVS+TSL + Y
Sbjct: 95  LRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 154

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +  G P+  + +F++M  + V PN  T ++++ AC+ L DL +GK+IH      G   NL
Sbjct: 155 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL 214

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH------------------- 204
            VCS+LV +Y KC  V  AR VFDLM  R+VVSW  ++ A+                   
Sbjct: 215 FVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 274

Query: 205 ----------------AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
                            +N +  EA+EMFR+       +PN+  ++S++ AC+    L  
Sbjct: 275 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGF-KPNEITISSILPACSFSENLRM 333

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  H  V R     +    +AL+ MYAKCG +N S  VF+ +    VV + +MI+  A 
Sbjct: 334 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 393

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +G G+ +L LF++M+   ++PN VTF GVL  CSHS LV+EG+Q  +SM R + + PDA 
Sbjct: 394 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDAN 453

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           HY+CVVD+  R GRL+EAYK  + + ++P      WG LL+A R++  V++A  ++ +L 
Sbjct: 454 HYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASA--WGALLAACRVYKNVELAKISAKKLF 511

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
           E        YV+L N    A  W     +R  MK  GI K PGCSW+++ ++ + F  G+
Sbjct: 512 EIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGD 571

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
                  ++ + L EL  KMK  GY    T  V  D++ E + E +  HSE+LA+AFG++
Sbjct: 572 KSNIESDKIYNFLDELVEKMKMAGY-KPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGIL 630

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++    TIR+ KNLR+C DCH+  K +S +V    VVRD  RFHHF+NG+CSC D W
Sbjct: 631 NLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 152/286 (53%), Gaps = 2/286 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           ARQLFD + +P+  + ++L++     G    A+ ++  +    + P+   F    KAC++
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             D +  K++H      G   ++ V ++L+  YGKC  V+GARRVFD +  R+VVSWTS+
Sbjct: 91  SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
              + +     + +++FRE  + S  +PN   ++S++ ACA L  L SGK  HG  VR G
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGW-SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 209

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
              N  V SALV +YAKC SV  +  VF+ + +  VV++  ++    K         LF 
Sbjct: 210 MVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFL 269

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           +M   G++ ++ T+  V+  C  +G  +E ++    M +K G  P+
Sbjct: 270 KMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM-QKMGFKPN 314



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 149/323 (46%), Gaps = 48/323 (14%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T +  +    E K L S   +H   ++ G + N F  + L++ Y +    + AR +FD M
Sbjct: 181 TVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM 240

Query: 89  LEPNVVSYTSLMAGY-----------------------------------INMGQPQIAL 113
              +VVS+  ++  Y                                   +  G+ + A+
Sbjct: 241 PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAV 300

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
            +F+KM      PNE T ++++ ACS   +L  GK+IH ++       +L   ++L+ MY
Sbjct: 301 EMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMY 360

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            KC D++ +R VFD+M  ++VV+W ++I+A+A +  G EAL +F +    SR +PN    
Sbjct: 361 AKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM-LLSRVQPNSVTF 419

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA------SALVDMYAKCGSVNYSDKV 287
             V++ C S  RLV      GV + +    + +V       S +VD+Y++ G +N + K 
Sbjct: 420 TGVLSGC-SHSRLVE----EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKF 474

Query: 288 FNRIS-NPSVVTYTSMIVGAAKY 309
              +   P+   + +++     Y
Sbjct: 475 IQGMPMEPTASAWGALLAACRVY 497



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+ +    G  N + ++F+ I  P   T +++I     +GL   ++ +++ +  RGIKP+
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 331 DVTFVGVLHACSHSG 345
              F+    AC+ SG
Sbjct: 78  MPVFLAAAKACAVSG 92


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 328/559 (58%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K G  S+ F  N LIN Y +  + Q A+++FD M   ++VS+ S++A Y     
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
           P  AL  F++ML   + P+  T  ++      L+D   G+ +H  +      + ++V+ +
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LV+MY K   +D AR VF+ +  R+V+SW ++I  +AQN    EA++ +          
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIV 449

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDK 286
           PNQ    S++ A + +G L  G   HG ++++ C F DV VA+ L+DMY KCG +  +  
Sbjct: 450 PNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-CLFLDVFVATCLIDMYGKCGRLEDAMS 508

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F  I   + V + ++I     +G G  +L LF +M + G+K + +TFV +L ACSHSGL
Sbjct: 509 LFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGL 568

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDE     D+M ++Y I P+ KHY C+VD+ GR G L++AY L  ++ +  D    +WGT
Sbjct: 569 VDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADAS--IWGT 626

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL+A R+HG  ++   AS++L+E + +    YV LSN YA  G+WE    +RS  +  G+
Sbjct: 627 LLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGL 686

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG S V +      FYAGN    + +E+   LR L  KMK  GYV   +  V  DVE
Sbjct: 687 RKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYS-FVLQDVE 745

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           ++ +EEI+  HSERLA+ FG+IS P    IRI KNLR+C DCH+  K IS I ER+ +VR
Sbjct: 746 EDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVR 805

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G CSCGD+W
Sbjct: 806 DSNRFHHFKDGICSCGDYW 824



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 212/395 (53%), Gaps = 13/395 (3%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C  L     +H  +LK GF  + +    LI+ Y R    +VA ++F +M   +
Sbjct: 153 FPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRD 212

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V S+ ++++G+   G    AL +  +M    V  +  T ++++  C+   D++ G  +H 
Sbjct: 213 VGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHL 272

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           ++   G + ++ V ++L++MY K   +  A+RVFD M  R++VSW SII A+ QN     
Sbjct: 273 YVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVT 332

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS---GKVAHGVVVR-SGCEFNDVVA 268
           AL  F+E  +    RP+   L +V++  +  G+L     G+  HG VVR    E + V+ 
Sbjct: 333 ALGFFKEMLFVGM-RPD---LLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIG 388

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGI 327
           +ALV+MYAK GS++ +  VF ++ +  V+++ ++I G A+ GL   ++D +N M   R I
Sbjct: 389 NALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTI 448

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            PN  T+V +L A SH G + +G++ +     K  +  D    TC++DM G+ GRL++A 
Sbjct: 449 VPNQGTWVSILPAYSHVGALQQGMK-IHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAM 507

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            L   I   P    + W  ++S+  +HG  + A++
Sbjct: 508 SLFYEI---PQETSVPWNAIISSLGIHGHGEKALQ 539



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 202/418 (48%), Gaps = 14/418 (3%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
            + C ++     +H+ +L  G   +   L  L+  Y  L    ++   F  +   N+ S+
Sbjct: 58  FRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSW 117

Query: 97  TSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
            S+++ Y+  G+ + ++    ++L  + V P+ +TF  V+KAC  LAD   G+++H  + 
Sbjct: 118 NSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVL 174

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             GF++++ V +SL+ +Y +   V+ A +VF  M  R+V SW ++I    QN    EAL 
Sbjct: 175 KMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALR 234

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +      +   + +   ++S++  CA    +V G + H  V++ G E +  V++AL++MY
Sbjct: 235 VLDRMKTEEV-KMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMY 293

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           +K G +  + +VF+ +    +V++ S+I    +      +L  F EM+  G++P+ +T V
Sbjct: 294 SKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVV 353

Query: 336 GVLHACSHSGLVDEGIQHLDSMY--RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            +  A     L D  I      +  R   +  D      +V+M  + G +D A  + + +
Sbjct: 354 SL--ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQL 411

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAG 449
              P    + W TL++    +G    A++A N + E    V N   +V++   Y+  G
Sbjct: 412 ---PSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVG 466



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           F  V ++C+   ++   KQ+H  +   G   ++V+ + LV +Y    D+  +   F  + 
Sbjct: 54  FNLVFRSCT---NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            +N+ SW S++ A+ +  +  ++++   E    S  RP+ +    V+ AC SL     G+
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGE 167

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  V++ G E +  VA++L+ +Y++ G+V  + KVF  +    V ++ +MI G  + G
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKH 369
               +L + + M +  +K + VT   +L  C+ S  V  G+  L  +Y  K+G+  D   
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV--LVHLYVIKHGLESDVFV 285

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQV 395
              +++M  + GRL +A ++   ++V
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEV 311


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 338/577 (58%), Gaps = 39/577 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GN 122
           + N +++ Y    + ++A  +F+ M+E ++VS+ +++AGY   G   +AL  F +ML  +
Sbjct: 415 SWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSAS 474

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + P+ FT  +V+ AC+ L  L  GKQ+H++I   G   +  + ++L+  Y K   V+ A
Sbjct: 475 SMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETA 534

Query: 183 RRV---------------------------------FDLMGCRNVVSWTSIIVAHAQNAQ 209
           RR+                                 FD+M  R+V++WT++IV + QN Q
Sbjct: 535 RRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQ 594

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+E+FR       + PN H LA+V++ACASL  L  GK  H   +RS  E +  V++
Sbjct: 595 NDEAMELFRSMILIGPE-PNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSN 653

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           A++ +YA+ GSV  + +VF++I      +T+TSMIV  A++GLG  ++ LF EM+  G+K
Sbjct: 654 AIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVK 713

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ +T+VGVL AC+H+G VD+G ++ + M  ++GI+P   HY C+VD+  R G L EA++
Sbjct: 714 PDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHE 773

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + V PD   ++WG+LL+A R+    D+A  A+ +L+  +   + AY  L+N Y+  
Sbjct: 774 FIQRMPVAPD--TVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSAC 831

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W +   +    K  G+ KE G SW  +R + + F A + L  +   +     E+  ++
Sbjct: 832 GRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEI 891

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K+ G+V      V  DV+DE +EE++  HSE+LA+AFGLIS P+  T+RIMKNLR+C DC
Sbjct: 892 KKAGFVPDLNS-VLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDC 950

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS  V+R+ +VRD  RFHHFR+G CSC D+W
Sbjct: 951 HTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 158/356 (44%), Gaps = 64/356 (17%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N FT N L++ Y +  +   A  +F EM + + VS+T ++ G    G+   A+  F  M+
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                P++FT   V+ +C+ +     G+++H  +   G    + V +S++ MYGKC D +
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 181 GARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNAQ 209
            AR VF+ M  R+V                               VSW +II  + QN  
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
              AL+ F      S   P+   + SV++ACA+L  L  GK  H  ++R+G   +  + +
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 270 ALVDMYAKCGSVNYSDK---------------------------------VFNRISNPSV 296
           AL+  YAK GSV  + +                                 +F+ ++N  V
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           + +T+MIVG  + G    +++LF  MI  G +PN  T   VL AC+    +D G Q
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQ 635



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 132/254 (51%), Gaps = 16/254 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  +   L+  YV+L  T+ AR++FD M   +V+++T+++ GY   GQ   A+ LF+ M+
Sbjct: 547 NVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMI 606

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                PN  T A V+ AC+ LA L  GKQIH        + ++ V ++++ +Y +   V 
Sbjct: 607 LIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVP 666

Query: 181 GARRVFDLMGCRN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
            ARRVFD +  R   ++WTS+IVA AQ+  G +A+ +F E   +   +P+      V++A
Sbjct: 667 LARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEM-VRVGVKPDHITYVGVLSA 725

Query: 240 CASLGRLVSGKV-------AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           CA  G +  GK         HG+V +          + +VD++A+ G +  + +   R+ 
Sbjct: 726 CAHAGFVDKGKRYYEQMQNEHGIVPQMSHY------ACMVDLHARAGLLTEAHEFIQRMP 779

Query: 293 -NPSVVTYTSMIVG 305
             P  V + S++  
Sbjct: 780 VAPDTVVWGSLLAA 793



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 5/213 (2%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N    +SL+ +Y K   +  A  VF  M  R+ VSWT +IV   ++ +  +A++ F +  
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            +    P+Q  L +V+++CA++     G+  H  VV+ G      VA++++ MY KCG  
Sbjct: 340 SEGFA-PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  VF R+   SV ++  M+      G    ++ +F  M+ R I    V++  ++   
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGY 454

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           + +GL    ++    M     + PDA   T V+
Sbjct: 455 NQNGLDGMALKFFSRMLSASSMEPDAFTVTSVL 487



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 107/265 (40%), Gaps = 40/265 (15%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT A  +       +L     +H + ++S    +    N +I  Y R     +AR++FD+
Sbjct: 615 HTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 674

Query: 88  M-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           +      +++TS++      G  + A++LF++M+   V P+  T+  V+ AC+    +  
Sbjct: 675 ICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDK 734

Query: 147 GKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAH 204
           GK+ +  ++   G    +   + +VD++ +   +  A      M    + V W S++ A 
Sbjct: 735 GKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAA- 793

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
                               R R N           A L  L +GK+       S    N
Sbjct: 794 -------------------CRVRKN-----------ADLAELAAGKLL------SIDPHN 817

Query: 265 DVVASALVDMYAKCGSVNYSDKVFN 289
               SAL ++Y+ CG  N + +++ 
Sbjct: 818 SGAYSALANVYSACGRWNDAARIWK 842


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 332/589 (56%), Gaps = 35/589 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ILK G   +      L++ Y + +    A  LFDE    ++  Y+SL+    +   
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 166

Query: 109 PQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           P++AL + + ML  + + P+ F  ++V    + L     G+Q+H H     +  + VV S
Sbjct: 167 PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 226

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-------- 219
           SLVDMY KC   D  R+VFD M  +N V WT+++  +A N +  EAL++FR         
Sbjct: 227 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 286

Query: 220 --------------------FNYQSRDR---PNQHMLASVINACASLGRLVSGKVAHGVV 256
                               F    RD     +  +L+ VI   A L   V G+  HG  
Sbjct: 287 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGST 346

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +R G   N +V +AL+DMY+KC  +  + +VF  I+   V+++T+M+VG A++G    +L
Sbjct: 347 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 406

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            L++ M+  G KPN+VTFVG+++ACSH+GLV +G Q  +SM  +YGI P  +HYTC +D+
Sbjct: 407 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 466

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           L R+G L EA +L  ++  +PD     WG LLSA   +   ++ +  S++L+E   + ++
Sbjct: 467 LSRSGHLLEAEELMTTMPYEPDEA--TWGALLSACTKYKDAEMCIRISDKLLELRPKDSS 524

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            Y+ LSN YA+ G+W++V  +R  M    I KEPG SW+E   +   F+AG    +   E
Sbjct: 525 TYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREE 584

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           ++  L E+  +M++RGYV   T  V  D+E+  +E  + LHSERLA+AFGLI  P G  I
Sbjct: 585 IMVFLEEMVLEMRKRGYV-PDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVI 643

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R++KNLR+C DCH V KLIS+I  R  VVRD +RFHHF  G CSC +FW
Sbjct: 644 RVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 349/613 (56%), Gaps = 50/613 (8%)

Query: 36  QLQECKHLISLASVHSEILKSGFLSNTFTLNHLI-----NCYVRLKKTQVARQLFDEMLE 90
            L  C +L     + S+++ +GF+S+TF  + L+     + ++ L     + Q+FD +  
Sbjct: 35  HLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGL---DYSLQIFDRIEN 91

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N   + ++M  YI     + ALLL++ M+ N V P+ +T+  V++AC++      GK+I
Sbjct: 92  SNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEI 151

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL---------------------- 188
           H H+   GF  ++ V ++L++MY  C ++  AR++FD                       
Sbjct: 152 HDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDM 211

Query: 189 ------------MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                       M  +++VSW+++I  + QN    EAL MF E N     R ++ ++ SV
Sbjct: 212 GQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM-RLDEVVVVSV 270

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV----DMYAKCGSVNYSDKVFNRIS 292
           ++ACA L  + +GK+ HG+V+R G E    + +AL+    DMY KCG V  + +VFN + 
Sbjct: 271 LSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGME 330

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
              V ++ ++I+G A  GL   SLD+F+EM + G+ PN++TF+GVL AC H GLVDEG  
Sbjct: 331 EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRC 390

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           H  SM  K+GI P+ KHY C+VD+LGR G L+EA KL +S+ + PD     WG LL A +
Sbjct: 391 HFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVAT--WGALLGACK 448

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
            HG  ++      +LIE        +V LSN +A  G+WE+V  +R  MK+ G+ K PGC
Sbjct: 449 KHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGC 508

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           S +E     + F AG+      ++V  +L E+ +++K  GY    T  V +D+++E +E 
Sbjct: 509 SLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGY-APDTNEVSLDIDEEEKET 567

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            +  HSE+LA+AFGL++I     IRIMKNLR+C DCH   KLIS    R+ VVRD +RFH
Sbjct: 568 TLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFH 627

Query: 593 HFRNGSCSCGDFW 605
           +F+ G+CSC D+W
Sbjct: 628 YFKEGACSCMDYW 640


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 329/548 (60%), Gaps = 21/548 (3%)

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
            +  + T++HL+         Q+   LF   L+ + +    L   Y ++G+   ++ LF 
Sbjct: 36  LIDKSKTISHLL---------QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALF- 85

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
              G    P+ F +  +I   ++  D+++ +Q+   +     + +LV  ++++  Y K  
Sbjct: 86  ---GRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMP----EKSLVSLTAMLTCYAKHG 138

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           ++D AR +FD M  R+ V W  +I  + QN   +EAL +FR    +++ +PN+  + SV+
Sbjct: 139 ELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVL 197

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           +AC  LG L SG+  H  +  +G +FN  V +ALVDMY+KCGS+  +  VF++I +  VV
Sbjct: 198 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            + SMIVG A +G  + +L LF  M   G+ P ++TF+G+L AC HSG V EG    + M
Sbjct: 258 AWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM 317

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             +YGI P  +HY C+V++LGR G +++AY+L K++ ++PD  P+LWGTLL A RLHG++
Sbjct: 318 KDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD--PVLWGTLLGACRLHGKI 375

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
            +  +    L++ N   +  Y+ LSN YA  G W+ V  LR+ MK +G+ KEPGCS +E+
Sbjct: 376 ALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 435

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
            ++ + F AG     +  E+  +L E+   +K  GY   +T +V  D+ +  +E  + +H
Sbjct: 436 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYT-PQTDIVLHDIGETEKERSLEVH 494

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AFGLI+   G TI+I+KNLR+C DCH+V KLIS I  R  VVRD NRFHHF NG
Sbjct: 495 SEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNG 554

Query: 598 SCSCGDFW 605
           SCSCGD+W
Sbjct: 555 SCSCGDYW 562



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 8/229 (3%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSG 57
           M    T+N +   A     R  K  +   +   +  L  C  L +L S   VHS I  +G
Sbjct: 161 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 220

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
              N      L++ Y +    + AR +FD++ + +VV++ S++ GY   G  Q AL LF+
Sbjct: 221 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 280

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKC 176
            M    + P   TF  ++ AC     +  G  I   + + +G +  +     +V++ G+ 
Sbjct: 281 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRA 340

Query: 177 NDVDGARRVFDLMGCR-NVVSWTSIIVA---HAQNAQGHEALEMFREFN 221
             V+ A  +   M    + V W +++ A   H + A G + +E+  + N
Sbjct: 341 GHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 389


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/560 (39%), Positives = 319/560 (56%), Gaps = 5/560 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++HS  +K G  S  F  N LI+ Y      +  +++FD M   +++S+ S++  Y    
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG-FQYNLVVC 166
           QP  A+LLFQ+M  + + P+  T  ++    S L ++   + +       G F  ++ + 
Sbjct: 328 QPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIG 387

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +++V MY K   VD AR VF+ +  ++V+SW +II  +AQN    EA+EM+     +  +
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGE 447

Query: 227 -RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              NQ    SV+ AC+  G L  G   HG ++++G   +  V ++L DMY KCG ++ + 
Sbjct: 448 ISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDAL 507

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F +I   + V + ++I     +G G  ++ LF EM+  G+KP+ +TFV +L ACSHSG
Sbjct: 508 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 567

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LVDEG    + M   YGI P  KHY C+VD+ GR G+L+ A    KS+ + PD    +WG
Sbjct: 568 LVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDAS--IWG 625

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LLSA R+HG VD+   AS  L E   +    +V LSN YA AG+WE V  +RS     G
Sbjct: 626 ALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKG 685

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K PG S +E+ ++   FY GN       E+   L  L  K+K  GYV      V  DV
Sbjct: 686 LRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHR-FVLQDV 744

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ED+ +E I+  HSERLA+AF LI+ P   TIRI KNLR+C DCH V K IS I ER+ +V
Sbjct: 745 EDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIV 804

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHHF+NG CSCGD+W
Sbjct: 805 RDSNRFHHFKNGVCSCGDYW 824



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 205/400 (51%), Gaps = 12/400 (3%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C+++     +H   LK GF+ + +    LI+ Y R      AR LFDEM   +
Sbjct: 156 FPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRD 215

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + S+ ++++GY   G  + AL L   +       +  T  +++ AC+   D   G  IH+
Sbjct: 216 MGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHS 271

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           +    G +  L V + L+D+Y +   +   ++VFD M  R+++SW SII A+  N Q   
Sbjct: 272 YSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLR 331

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASAL 271
           A+ +F+E    SR +P+   L S+ +  + LG + + +   G  +R G    D+ + +A+
Sbjct: 332 AILLFQEMRL-SRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKP 329
           V MYAK G V+ +  VFN + N  V+++ ++I G A+ G    +++++N M   G  I  
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISA 450

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N  T+V VL ACS +G + +G++ L     K G+  D    T + DM G+ GRLD+A  L
Sbjct: 451 NQGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSL 509

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
              I   P    + W TL++    HG  + AV    ++++
Sbjct: 510 FYQI---PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 546



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 195/432 (45%), Gaps = 15/432 (3%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL 99
           C +L S   +H+ ++ S  + N      L+N Y  L    +AR  FD +   +V ++  +
Sbjct: 64  CTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLM 123

Query: 100 MAGYINMGQPQIALLLFQK-MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++GY   G     +  F   ML + + P+  TF +V+KAC  + D   G +IH     FG
Sbjct: 124 ISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFG 180

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F +++ V +SL+ +Y +   V  AR +FD M  R++ SW ++I  + Q+    EAL +  
Sbjct: 181 FMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSD 240

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
                     +   + S+++AC   G    G   H   ++ G E    V++ L+D+YA+ 
Sbjct: 241 GLRAM-----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEF 295

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GS+    KVF+R+    ++++ S+I           ++ LF EM    I+P+ +T + + 
Sbjct: 296 GSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLA 355

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
              S  G +           RK   + D      VV M  + G +D A  +   +   P+
Sbjct: 356 SILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL---PN 412

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA---NAYVTLSNTYALAGEWENVH 455
              + W T++S    +G    A+E  N + E   +++     +V++    + AG      
Sbjct: 413 KDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGM 472

Query: 456 SLRSEMKRTGIH 467
            L   + + G++
Sbjct: 473 KLHGRLLKNGLY 484



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           T+ + C+   +L + K +H  +       N+ + + LV++Y    +V  AR  FD +  R
Sbjct: 59  TLFRYCT---NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR 115

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           +V +W  +I  + +     E +  F  F   S  +P+     SV+ AC +   +  G   
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKI 172

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H + ++ G  ++  VA++L+ +Y + G+V  +  +F+ +    + ++ +MI G  + G  
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNA 232

Query: 313 RFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
           + +L L     S G++  D VT V +L AC+ +G  + G+  + S   K+G+  +     
Sbjct: 233 KEALTL-----SDGLRAMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSN 286

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            ++D+    G L +  K+   + V      + W +++ A  L+
Sbjct: 287 KLIDLYAEFGSLKDCQKVFDRMYVRD---LISWNSIIKAYELN 326


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 332/589 (56%), Gaps = 35/589 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ILK G   +      L++ Y + +    A  LFDE    ++  Y+SL+    +   
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 84

Query: 109 PQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           P++AL + + ML  + + P+ F  ++V    + L     G+Q+H H     +  + VV S
Sbjct: 85  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 144

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-------- 219
           SLVDMY KC   D  R+VFD M  +N V WT+++  +A N +  EAL++FR         
Sbjct: 145 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 204

Query: 220 --------------------FNYQSRDR---PNQHMLASVINACASLGRLVSGKVAHGVV 256
                               F    RD     +  +L+ VI   A L   V G+  HG  
Sbjct: 205 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGST 264

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +R G   N +V +AL+DMY+KC  +  + +VF  I+   V+++T+M+VG A++G    +L
Sbjct: 265 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 324

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            L++ M+  G KPN+VTFVG+++ACSH+GLV +G Q  +SM  +YGI P  +HYTC +D+
Sbjct: 325 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 384

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           L R+G L EA +L  ++  +PD     WG LLSA   +   ++ +  S++L+E   + ++
Sbjct: 385 LSRSGHLLEAEELMTTMPYEPDEA--TWGALLSACTKYKDAEMCIRISDKLLELRPKDSS 442

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            Y+ LSN YA+ G+W++V  +R  M    I KEPG SW+E   +   F+AG    +   E
Sbjct: 443 TYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREE 502

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           ++  L E+  +M++RGYV   T  V  D+E+  +E  + LHSERLA+AFGLI  P G  I
Sbjct: 503 IMVFLEEMVLEMRKRGYV-PDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVI 561

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R++KNLR+C DCH V KLIS+I  R  VVRD +RFHHF  G CSC +FW
Sbjct: 562 RVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/579 (36%), Positives = 332/579 (57%), Gaps = 37/579 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T   ++  YVR      AR +F+E+     V + ++++GY++ G    A  LF++M+
Sbjct: 227 DALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMV 286

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKC 176
              V  +EFTF +V+ AC+       GK +H  I      F  +  L V ++LV +Y KC
Sbjct: 287 LERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKC 346

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ------------- 223
            ++  ARR+FD M  ++VVSW +I+  + +++   +A+E+F E  Y+             
Sbjct: 347 GNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYV 406

Query: 224 ----SRD-------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
               S D             +P  +  A  I+AC  LG L  GK  HG +V+ G E ++ 
Sbjct: 407 HGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNS 466

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+ MYA+CG+V  ++ +F  + N   V++ +MI    ++G GR +L+LF+ M++ G
Sbjct: 467 AGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           I P+ ++F+ VL AC+HSGLVDEG Q+ +SM R +GIIP   HYT ++D+LGR GR+ EA
Sbjct: 527 IYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L K++  +P   P +W  +LS  R  G +++   A++QL +   Q    Y+ LSNTY+
Sbjct: 587 RDLIKTMPFEPT--PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYS 644

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG W +   +R  M+  G+ KEPGCSW+E  ++ + F  G+       +V   L  +  
Sbjct: 645 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGA 704

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +M++ GYV   T +V  D+E   +E I+  HSERLA+ FGL+ +P G T+ ++KNLR+C 
Sbjct: 705 RMRKLGYV-PDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICD 763

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH V   +S  V R+ VVRDV RFHHF++G CSCG++W
Sbjct: 764 DCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 146/343 (42%), Gaps = 53/343 (15%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           V  +SLV  Y     +  A   FD +    R+ V   ++I A+A+ +    A+ +FR   
Sbjct: 89  VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGV-----VVRSGCEFNDVVASALVDMYA 276
                RP+ +   ++++A    G L +  V H       V++SG      V++ALV +Y 
Sbjct: 149 ASGSLRPDDYSFTALLSAA---GHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYM 205

Query: 277 KCGSVNYSD---KVFNRISNPSVVTYTSMIVGAAKYG-LG-----------RF------- 314
           KC ++  +    KV + + +   +T+T+M+VG  + G +G           +F       
Sbjct: 206 KCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAM 265

Query: 315 ------------SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KY 361
                       + +LF  M+   +  ++ TF  VL AC+++G    G      + R + 
Sbjct: 266 ISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQP 325

Query: 362 GIIPDAKHYT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
             +P+A       +V +  + G +  A ++  +++       + W T+LS       +D 
Sbjct: 326 NFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMK---SKDVVSWNTILSGYVESSCLDK 382

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           AVE   ++   N+    +++ + + Y   G  E+   L + M+
Sbjct: 383 AVEVFEEMPYKNEL---SWMVMVSGYVHGGFSEDALKLFNRMR 422



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 5/174 (2%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   +  C  L SL     +H  +++ GF  +    N LI  Y R    + A  +F  M 
Sbjct: 433 YAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + VS+ ++++     G  + AL LF +M+   ++P+  +F TV+ AC+    +  G Q
Sbjct: 493 NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQ 552

Query: 150 IHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSII 201
               ++  FG        + L+D+ G+   +  AR +   M      S W +I+
Sbjct: 553 YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAIL 606


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/636 (35%), Positives = 352/636 (55%), Gaps = 55/636 (8%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK----- 76
           N+RS   +  + +      K L     +HS  +++G  ++ F  N LI+ Y +       
Sbjct: 254 NERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDA 313

Query: 77  --------------------------KTQVARQLFDEMLEPN----VVSYTSLMAGYINM 106
                                     K   A +LF  M + N    V+++++++AGY   
Sbjct: 314 VNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQR 373

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH------------I 154
           G  Q AL  FQ+M+     PN  T  +++ AC+ L  L  G + H +             
Sbjct: 374 GYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDF 433

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHE 212
              G   +LVV ++L+DMY KC     AR +F+ +  R  NVV+WT +I  +AQ    ++
Sbjct: 434 GGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSND 493

Query: 213 ALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV--VAS 269
           AL++F E   +     PN + ++ ++ ACA L  L  GK  H  V R     + V  VA+
Sbjct: 494 ALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN 553

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L+DMY+KCG V+ +  VF+ +   + V++TSM+ G   +G G+ +LD+F++M   G  P
Sbjct: 554 CLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVP 613

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +D++F+ +L+ACSHSG+VD+G+ + D M   YG+I  A+HY CV+D+L R+GRLD+A+K 
Sbjct: 614 DDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKT 673

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + + ++P     +W  LLSA R+H  V++A  A N+L+    +   +Y  +SN YA A 
Sbjct: 674 IQEMPMEPSAA--IWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATAR 731

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W++V  +R  MK++GI K PGCSWV+ +  T +F+ G+       E+ SLL  L  ++K
Sbjct: 732 RWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIK 791

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GYV  +T     DV+DE +  ++  HSE+LALA+GL++   G  IRI KNLR+C DCH
Sbjct: 792 VMGYV-PETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCH 850

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             F  IS IV+ + +VRD +RFHHF+NGSCSCG +W
Sbjct: 851 SAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 178/387 (45%), Gaps = 63/387 (16%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTL--------------------NHL 68
           +  HF   L+EC+ + ++  +H +I+  G LS   +L                      +
Sbjct: 30  SPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGV 89

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
           +  Y+    T  A  + + ++    V +  L+  +I  G+   A+ +  +ML     P+ 
Sbjct: 90  VASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDH 149

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           FT    +KAC  L    +G   H  I   GF+ N+ VC++LV MY +   ++ A  VFD 
Sbjct: 150 FTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDE 209

Query: 189 M---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY-----QSRDRPNQHMLASVINAC 240
           +   G  +V+SW SI+ AH + +    AL++F E         + +R +   + +++ AC
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPAC 269

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN----------- 289
           ASL  L   K  H   +R+G   +  V +AL+D YAKCGS+  +  VFN           
Sbjct: 270 ASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWN 329

Query: 290 ----------------------RISN-P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
                                 R  N P  V+T++++I G A+ G G+ +LD F +MI  
Sbjct: 330 AMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILY 389

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           G +PN VT + +L AC+  G + +G++
Sbjct: 390 GSEPNSVTIISLLSACASLGALSQGME 416


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 327/565 (57%), Gaps = 30/565 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +I+ Y +    + AR++FD M E NV+S+++++A Y   GQ + AL LF+ ML + + P+
Sbjct: 300 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 359

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           + T A+++ AC    +L   +Q+H      G   NL+V + LV  Y     +D A  +FD
Sbjct: 360 KITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFD 419

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF--------NY----------------Q 223
            M  R+ VSW+ ++   A+          FRE         NY                +
Sbjct: 420 GMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDK 479

Query: 224 SRDR---PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            R+    P++  + +V+ ACA LG +   +     + R   + + ++ +A++DM+AKCG 
Sbjct: 480 MREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 539

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           V  + ++F+R+   +V+++++MI     +G GR +LDLF  M+  GI PN +T V +L+A
Sbjct: 540 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 599

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSH+GLV+EG++    M+  Y +  D KHYTCVVD+LGR GRLDEA KL +S+ V+ D G
Sbjct: 600 CSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEG 659

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             LWG  L A R H  V +A +A+  L+E   Q    Y+ LSN YA AG WE+V   R  
Sbjct: 660 --LWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDL 717

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M +  + K PG +W+E+ ++++ F  G+    R  E+  +L+ L  K++  GYV   T  
Sbjct: 718 MSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV-PDTNF 776

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  DV++E +  I+  HSE+LA+AFGLI+ P+   IRI+KNLR+C DCH   KL+S I  
Sbjct: 777 VLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITG 836

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  +VRD NRFHHF+ G+CSCGD+W
Sbjct: 837 RVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 173/335 (51%), Gaps = 32/335 (9%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQE---------CKHLISLASVHSEILKSGFLSNTFTLN 66
           +SL   N+     +K HF+Q+L           C++L  +  VH++    G L N    N
Sbjct: 59  TSLNLHNREEE-SSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVAN 117

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            LI  Y   +    A  LFD M   + VS++ ++ G+  +G        F++++     P
Sbjct: 118 KLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARP 177

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + +T   VI+AC  L +L                       +LVDMY KC +++ AR +F
Sbjct: 178 DNYTLPFVIRACRDLKNLQM---------------------ALVDMYVKCREIEDARFLF 216

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  R++V+WT +I  +A+  + +E+L +F +   +    P++  + +V+ ACA LG +
Sbjct: 217 DKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV-VPDKVAMVTVVFACAKLGAM 275

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
              ++    + R   + + ++ +A++DMYAKCG V  + ++F+R+   +V+++++MI   
Sbjct: 276 HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY 335

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +G GR +LDLF  M+S G+ P+ +T   +L+AC
Sbjct: 336 GYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 203/400 (50%), Gaps = 13/400 (3%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ YV+ ++ + AR LFD+M E ++V++T ++ GY   G+   +L+LF+KM    V P+
Sbjct: 199 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 258

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           +    TV+ AC+ L  +   + I  +I+   FQ ++++ ++++DMY KC  V+ AR +FD
Sbjct: 259 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 318

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  +NV+SW+++I A+  + QG +AL++FR     S   P++  LAS++ AC +   L 
Sbjct: 319 RMEEKNVISWSAMIAAYGYHGQGRKALDLFR-MMLSSGMLPDKITLASLLYACINCRNLT 377

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
             +  H      G   N +VA+ LV  Y+   +++ +  +F+ +     V+++ M+ G A
Sbjct: 378 QVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA 437

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           K G        F E+I  G +P++ T           G  +E +   D M R+ G++PD 
Sbjct: 438 KVGDYMNCFGTFRELIRCGARPDNYTL-------PFCGNANESLVLFDKM-REEGVVPDK 489

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT-LLSASRLHGRVDIAVEASNQ 426
                VV    + G + +A  +   IQ       ++ GT ++      G V+ A E  ++
Sbjct: 490 VAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR 549

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           + E N    +A +     Y   G+      L   M R+GI
Sbjct: 550 MEEKNVISWSAMIA---AYGYHGQGRKALDLFPMMLRSGI 586



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 29/249 (11%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +     C++L  +  VH++    G L N    N L++ Y   +    A  LFD M
Sbjct: 362 TLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 89  LEPNVVSYTSLMAGYINM----------------------------GQPQIALLLFQKML 120
              + VS++ ++ G+  +                            G    +L+LF KM 
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMR 481

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V P++    TV+ AC+ L  +   + I  +I+   FQ ++++ ++++DM+ KC  V+
Sbjct: 482 EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 541

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR +FD M  +NV+SW+++I A+  + QG +AL++F     +S   PN+  L S++ AC
Sbjct: 542 SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF-PMMLRSGILPNKITLVSLLYAC 600

Query: 241 ASLGRLVSG 249
           +  G +  G
Sbjct: 601 SHAGLVEEG 609



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 26/288 (9%)

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           +L   +Q+H      G   N+VV + L+  Y     +D A  +FD M  R+ VSW+ ++ 
Sbjct: 93  NLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 152

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
             A+          FRE   +   RP+ + L  VI AC  L  L                
Sbjct: 153 GFAKVGDYINCFGTFREL-IRCGARPDNYTLPFVIRACRDLKNL---------------- 195

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
                  ALVDMY KC  +  +  +F+++    +VT+T MI G A+ G    SL LF +M
Sbjct: 196 -----QMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 250

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G+ P+ V  V V+ AC+  G + +  + +D   ++     D    T ++DM  + G 
Sbjct: 251 REEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 309

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           ++ A ++   ++   +   + W  +++A   HG+   A++    ++ S
Sbjct: 310 VESAREIFDRME---EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSS 354


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 336/567 (59%), Gaps = 12/567 (2%)

Query: 37  LQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L++C   K LI    VH+ IL+S F  +    N L+N Y +    + AR++F++M + + 
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++T+L++GY    +P  ALL F +ML     PNEFT ++VIKA +       G Q+H  
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               GF  N+ V S+L+D+Y +   +D A+ VFD +  RN VSW ++I  HA+ +   +A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 214 LEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           LE+F+      RD  RP+    AS+  AC+S G L  GK  H  +++SG +      + L
Sbjct: 247 LELFQGM---LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAK GS++ + K+F+R++   VV++ S++   A++G G+ ++  F EM   GI+PN+
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           ++F+ VL ACSHSGL+DEG  + + M +K GI+P+A HY  VVD+LGR G L+ A +  +
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + ++P     +W  LL+A R+H   ++   A+  + E +      +V L N YA  G W
Sbjct: 423 EMPIEPTAA--IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 480

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
            +   +R +MK +G+ KEP CSWVEI +  + F A +    +  E+     E+  K+KE 
Sbjct: 481 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V V V+ + RE  +  HSE++ALAF L++ P G TI I KN+R+C DCH  
Sbjct: 541 GYV-PDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTA 599

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGS 598
            KL S +V R+ +VRD NRFHHF++ S
Sbjct: 600 IKLASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
           G+ +  +   + T++K C++   LI G+ +H HI    F++++V+ ++L++MY KC  ++
Sbjct: 53  GSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLE 112

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---FNYQSRDRPNQHMLASVI 237
            AR+VF+ M  R+ V+WT++I  ++Q+ +  +AL  F +   F Y     PN+  L+SVI
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS----PNEFTLSSVI 168

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            A A+  R   G   HG  V+ G + N  V SAL+D+Y + G ++ +  VF+ + + + V
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++ ++I G A+      +L+LF  M+  G +P+  ++  +  ACS +G +++G + + + 
Sbjct: 229 SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAY 287

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK----LAKSIQVDPDGGPLLWGTLLSASRL 413
             K G    A     ++DM  ++G + +A K    LAK   V        W +LL+A   
Sbjct: 288 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-------WNSLLTAYAQ 340

Query: 414 HG 415
           HG
Sbjct: 341 HG 342


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/558 (37%), Positives = 325/558 (58%), Gaps = 6/558 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H    +SGF S     N L++ Y +    ++AR +F  M    VVS+ +++ G    G
Sbjct: 267 SIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNG 326

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + A   F KML     P   T   V+ AC+ L DL  G  +H  ++      N+ V +
Sbjct: 327 ESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMN 386

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MY KC  VD A  +F+ +   NV +W ++I+ +AQN    EAL +F     Q   +
Sbjct: 387 SLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGI-K 444

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            +   L  VI A A        K  HG+ VR+  + N  V++ALVDMYAKCG++  + K+
Sbjct: 445 LDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKL 504

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +    V+T+ +MI G   +G+G+ +LDLFNEM    +KPND+TF+ V+ ACSHSG V
Sbjct: 505 FDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFV 564

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG+    SM   Y + P   HY+ +VD+LGR G+LD+A+   + + + P  G  + G +
Sbjct: 565 EEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKP--GISVLGAM 622

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A ++H  V++  +A+ +L + +      +V L+N YA    W+ V  +R+ M+  G+H
Sbjct: 623 LGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLH 682

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K PGCSWVE+R++ + FY+G+       ++ + L  L  ++K  GYV     +   DVE+
Sbjct: 683 KTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI--HDVEE 740

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +++++  HSERLA+AFGL++   G T+ I KNLR+C DCHD  K IS +  R+ +VRD
Sbjct: 741 DVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRD 800

Query: 588 VNRFHHFRNGSCSCGDFW 605
           + RFHHF+NGSCSCGD+W
Sbjct: 801 LRRFHHFKNGSCSCGDYW 818



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 195/382 (51%), Gaps = 9/382 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C   + L     +H  I+ +GF SN F +  +++ Y + ++   A ++F+ M   ++
Sbjct: 152 LQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDL 211

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T+L+AGY   G  + AL L  +M      P+  T  +++ A + +  L  G+ IH +
Sbjct: 212 VSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGY 271

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               GF+  + V ++L+DMY KC     AR VF  M  + VVSW ++I   AQN +  EA
Sbjct: 272 AFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEA 331

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
              F +      + P +  +  V+ ACA+LG L  G   H ++ +   + N  V ++L+ 
Sbjct: 332 FATFLKM-LDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KC  V+ +  +FN +   + VT+ +MI+G A+ G  + +L+LF  M S+GIK +  T
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFT 449

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            VGV+ A +    V+   + +  +  +  +  +    T +VDM  + G +  A KL   +
Sbjct: 450 LVGVITALADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMM 508

Query: 394 QVDPDGGPLLWGTLLSASRLHG 415
           Q   +   + W  ++     HG
Sbjct: 509 Q---ERHVITWNAMIDGYGTHG 527



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 191/385 (49%), Gaps = 6/385 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C     L  +   I+K+GF +       +I+ + +      A ++F+ +     V Y
Sbjct: 54  LENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLY 113

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
             ++ GY        AL  F +M+ + V      +A +++ C    DL  G++IH  I T
Sbjct: 114 HIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIIT 173

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF+ NL V ++++ +Y KC  +D A ++F+ M  +++VSWT+++  +AQN     AL++
Sbjct: 174 NGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQL 233

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
             +   ++  +P+   L S++ A A +  L  G+  HG   RSG E    V +AL+DMY 
Sbjct: 234 VLQMQ-EAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYF 292

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCGS   +  VF  + + +VV++ +MI G A+ G    +   F +M+  G  P  VT +G
Sbjct: 293 KCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMG 352

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL AC++ G ++ G   +  +  K  +  +      ++ M  +  R+D    +A SI  +
Sbjct: 353 VLLACANLGDLERG-WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVD----IAASIFNN 407

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAV 421
            +   + W  ++     +G V  A+
Sbjct: 408 LEKTNVTWNAMILGYAQNGCVKEAL 432


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 353/616 (57%), Gaps = 28/616 (4%)

Query: 2   KKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSN 61
           K  L R +   LA+S+   +    +C      +  LQ C  L  L  +H+ ILK G  +N
Sbjct: 7   KPKLLRTINNVLASSTPNPRAPEQNC------LALLQACNALPKLTQIHTHILKLGLHNN 60

Query: 62  TFTLNHLINCYVRLKKTQVA----------RQLFDEMLEPNVVSYTSLMAGYINMGQPQ- 110
              L    +    +  T  A           +L+D  L      + +L+  Y   G  + 
Sbjct: 61  PLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFL------FNTLIRAYAQTGHSKD 114

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
            AL L+  ML + + PN+FT+  V+KAC+ L  L  G+ +H  +  FGF  ++ V +++V
Sbjct: 115 KALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMV 174

Query: 171 DMYGKC-NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
            MY  C   ++ AR+VFD M   + V+W+++I  +A+  +  EA+ +FRE    +   P+
Sbjct: 175 HMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQ-MAEVCPD 233

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  + S+++AC  LG L  GK     + R        V++AL+DM+AKCG ++ + K+F 
Sbjct: 234 EITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFR 293

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            ++  ++V++TS+IVG A +G G+ +  LF EM S G+ P+DV F+G+L ACSHSGLV+ 
Sbjct: 294 AMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVER 353

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G ++  SM +KY ++P  +HY C+VDM  RTG + EA +  +++ ++P+  P++  TL+S
Sbjct: 354 GREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPN--PVILRTLVS 411

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A R HG   +  + +  L++      + YV LSN YA    WE    +R  M+  G+ K 
Sbjct: 412 ACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKV 471

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG + +EI ++ Y F AG+   ++  E+  ++ E+ R+MK+ GY    T  V +D+ +E 
Sbjct: 472 PGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPS-TSEVLLDINEED 530

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +E+ +  HSE+LA+AFGL+  P G  IRI+KNLR+C DCH   K IS I +R+ ++RD N
Sbjct: 531 KEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRN 590

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF++G CSCGDFW
Sbjct: 591 RFHHFKSGQCSCGDFW 606


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 333/596 (55%), Gaps = 25/596 (4%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  LA    +H+ +LK   L+ N+F  + L++ Y   +K   AR++FD +
Sbjct: 285 FASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMV 344

Query: 89  LEPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLI 145
            EP+  +  + +++ GY   G  + AL LF +M       P+E T + V+ AC+      
Sbjct: 345 PEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFA 404

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
             + +H ++   G   N  V ++L+DMY +  ++D ARR+F ++  R+VVSW ++I    
Sbjct: 405 GKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCV 464

Query: 206 QNAQGHEALEMFREFNYQS---------------RDRPNQHMLASVINACASLGRLVSGK 250
                 EA ++  E    S               R  PN   L +++  CA+L     GK
Sbjct: 465 VQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGK 524

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG  VR   E +  V SALVDMYAKCG +  S  VF+R+   +V+T+  +I+    +G
Sbjct: 525 EIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHG 584

Query: 311 LGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           LG  ++ LF+EM + G   PN+VTF+  L ACSHSGLVD G++    M R +G+ P    
Sbjct: 585 LGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDL 644

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
           + CVVD+LGR GRLDEAY +  S++   +     W +LL A RLH  V++   A+ +L E
Sbjct: 645 HACVVDVLGRAGRLDEAYSIITSMEPG-EQQVSAWSSLLGACRLHRNVELGEVAAERLFE 703

Query: 430 SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNA 489
                A+ YV L N Y+ AG W+   ++R  M+R G+ KEPGCSW+E+    + F AG +
Sbjct: 704 LEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGES 763

Query: 490 LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLIS 549
                +EV + +  L  +M+  GY    T  V  DV+++ +  ++  HSE+LA+AFGL+ 
Sbjct: 764 SHPASAEVHAHMDALWERMRREGYAP-DTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLR 822

Query: 550 IPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            P G  IR+ KNLR+C DCH+  K +S +V RD V+RDV RFHHFR+GSCSCGD+W
Sbjct: 823 APPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 187/416 (44%), Gaps = 32/416 (7%)

Query: 49  VHSEILKSGFLSN---TFTLNHLINCYVRLKKTQVARQLF---DEMLEP---NVVSYTSL 99
            H+  LK GFL      F  N L++ Y RL     A+ LF        P   +VV++ ++
Sbjct: 194 AHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTM 253

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFG 158
           ++  +  G+   A+ +   M+   V P+  TFA+ + ACS L  L  G+++H  + +   
Sbjct: 254 ISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDAD 313

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEM 216
              N  V S+LVDMY     V  ARRVFD++    R +  W ++I  +AQ     EALE+
Sbjct: 314 LAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALEL 373

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F     ++   P++  ++ V+ ACA        +  HG VV+ G   N  V +AL+DMYA
Sbjct: 374 FSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYA 433

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI------------- 323
           + G ++ + ++F  I    VV++ ++I G    G    +  L  EM              
Sbjct: 434 RLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTE 493

Query: 324 ---SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
              +    PN++T + +L  C+       G + +     ++ +  D    + +VDM  + 
Sbjct: 494 EGEAHRCMPNNITLMTLLPGCAALAAPARG-KEIHGYAVRHALESDIAVGSALVDMYAKC 552

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           G L  +  +   +   P    + W  L+ A  +HG  D AV   +++    +   N
Sbjct: 553 GCLAASRAVFDRL---PRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPN 605



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 20/267 (7%)

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL----GRLV 247
           R+ VS+ S+I A     Q   AL+  R+   + R   +   L SV+ AC+ L    GR +
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 248 SGKVAHGVVVRSGCEFND-----VVASALVDMYAKCGSVNYSDKVFNRIS---NPS---V 296
            G+ AH   ++ G  F D        +AL+ MYA+ G V+ +  +F   +   +P    V
Sbjct: 191 -GREAHAFALKRG--FLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDV 247

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           VT+ +MI    + G    ++++  +M+S G++P+ VTF   L ACS   ++  G +    
Sbjct: 248 VTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAV 307

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           + +   +  ++   + +VDM     ++  A ++   +  +P     +W  ++      G 
Sbjct: 308 VLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVP-EPSRQLGMWNAMICGYAQAGM 366

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSN 443
            + A+E  +++ E+    A +  T+S 
Sbjct: 367 DEEALELFSRM-EAEAGCAPSETTMSG 392


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 335/590 (56%), Gaps = 36/590 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++I+K+G   +    N L+N Y +    Q A QLFD +   + V++ SL+       +
Sbjct: 25  LHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNR 84

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL--ITGKQIHTHIETFGFQYNLVVC 166
           P  AL + + +L     P+ F FA+++KAC+ L  L    GKQ+H       F  + VV 
Sbjct: 85  PHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVK 144

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR- 225
           SSL+DMY K    D  R VFD +   N +SWT++I  +A++ +  EA  +FR+  Y++  
Sbjct: 145 SSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLF 204

Query: 226 ------------------------------DRPNQHMLASVINACASLGRLVSGKVAHGV 255
                                            +  +L+SV+ ACA+L     GK  HGV
Sbjct: 205 AWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGV 264

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           V+  G E    +++AL+DMYAKC  +  +  +F  +    VV++TS+IVG A++G    +
Sbjct: 265 VITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEA 324

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L L++EM+  G+KPN+VTFVG++HACSH+GLV +G     +M   +GI P  +HYTC++D
Sbjct: 325 LALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLD 384

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +  R+G LDEA  L +++ V+PD     W  LLS+ + HG   +AV  ++ L+    +  
Sbjct: 385 LFSRSGHLDEAENLIRTMPVNPDEP--TWAALLSSCKRHGNTQMAVRIADHLLNLKPEDP 442

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
           ++Y+ LSN YA AG WE+V  +R  M      K PG S +++   ++ FYAG        
Sbjct: 443 SSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRD 502

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E++ L+REL+ +M++RGY    T  V  D++ + +E  +  HSERLA+A+GL+    G  
Sbjct: 503 EIIGLMRELDEEMRKRGY-APDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTV 561

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IRI+KNLR+C DCH V KLIS I  R+  VRD  R+HHF++G+CSC DFW
Sbjct: 562 IRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 3/185 (1%)

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           +  K++H  I   G   +  + ++L++ YGKC  +  A ++FD +  R+ V+W S++ A 
Sbjct: 20  LLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTAC 79

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL--VSGKVAHGVVVRSGCE 262
             + + H AL + R     +   P+  + AS++ ACA+LG L    GK  H     S   
Sbjct: 80  NLSNRPHRALSISRSL-LSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFS 138

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            +DVV S+L+DMYAK G  +Y   VF+ IS+ + +++T+MI G A+ G    +  LF + 
Sbjct: 139 DDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQT 198

Query: 323 ISRGI 327
             R +
Sbjct: 199 PYRNL 203



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           L S + + A    L++ K+ H  ++++G   ++ + + L++ Y KCG +  + ++F+ + 
Sbjct: 7   LQSQLCSAARQSPLLAKKL-HAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALP 65

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL--VDEG 350
               V + S++           +L +   ++S G  P+   F  ++ AC++ G+  V +G
Sbjct: 66  RRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQG 125

Query: 351 IQHLDSMYRKYGIIP---DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            Q    ++ ++ + P   D    + ++DM  + G  D    +  SI        + W T+
Sbjct: 126 KQ----VHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSIS---SLNSISWTTM 178

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           +S     GR     EA     ++  +   A+  L +    +G   +   L  EM+  GI
Sbjct: 179 ISGYARSGR---KFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGI 234


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/582 (36%), Positives = 346/582 (59%), Gaps = 39/582 (6%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L NT + N +I+ ++   +  +A   F+ + E ++VS+ S++AG    G    AL  F  
Sbjct: 170 LRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSS 229

Query: 119 MLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +L +  + P+ F+ A+ + AC+ L  L  GKQIH +I    F  +  V ++L+ MY K  
Sbjct: 230 ILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSG 289

Query: 178 ---------------------------------DVDGARRVFDLMGCRNVVSWTSIIVAH 204
                                            D+  AR++F+ +   +VV+WT++IV +
Sbjct: 290 GVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGY 349

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN   ++A+E+F+    +   RPN   LA++++A +S+  L  GK  H   +RSG   +
Sbjct: 350 VQNGLNNDAIEVFKTMVSEG-PRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALS 408

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V +AL  MYAK GS+N + KVFN +  N   V++TSMI+  A++GLG  +++LF +M+
Sbjct: 409 PSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML 468

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           + GIKP+ +T+VGVL AC+H GLV++G  + D M   + I P   HY C+VD+ GR G L
Sbjct: 469 TLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLL 528

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            EAYK  +++ ++PD   + WG+LLS+ +++  VD+A  A+ +L+      + AY  L+N
Sbjct: 529 QEAYKFVENMPMEPD--VIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALAN 586

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            Y+  G+W++   +R  MK  G+ KE G SWV+I+++T+ F   + L  +  E+  ++ +
Sbjct: 587 VYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDK 646

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           + +++K+ G+    T  V  D+E E +++I+  HSE+LA+AFG+IS P+  T+RIMKNLR
Sbjct: 647 IWKEIKKMGF-APDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLR 705

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH+  K IS +V+R+ +VRD  RFHHF++GSCSC D+W
Sbjct: 706 VCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 205/435 (47%), Gaps = 69/435 (15%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           +  TF+ N +++ Y +  K + A Q+FD +   + VS+T+++ GY  MG+ + A+ +F  
Sbjct: 38  VKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVD 97

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M+ + V P +FT   V+ +C+       GK++H+ +   G    + V +SL++MY K  D
Sbjct: 98  MVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGD 157

Query: 179 VDGARRVFDLMGCRN-------------------------------VVSWTSIIVAHAQN 207
           +  A+ VFD M  RN                               +VSW S+I    Q+
Sbjct: 158 LKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQH 217

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
              +EAL+ F      +  +P++  LAS ++ACA+L +L  GK  HG +VR+  + +  V
Sbjct: 218 GFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAV 277

Query: 268 ASALVDMYAKCGSVNYSDK---------------------------------VFNRISNP 294
            +AL+ MYAK G V  + +                                 +FN + +P
Sbjct: 278 GNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDP 337

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-H 353
            VV +T+MIVG  + GL   ++++F  M+S G +PN  T   +L A S    ++ G Q H
Sbjct: 338 DVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIH 397

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
             ++     + P   +   +  M  + G ++ A K+   ++ + D   + W +++ A   
Sbjct: 398 ASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRD--TVSWTSMIMALAQ 453

Query: 414 HGRVDIAVEASNQLI 428
           HG  + A+E   Q++
Sbjct: 454 HGLGEEAIELFEQML 468



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 84/188 (44%), Gaps = 3/188 (1%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
           ++  +  R +  T A  +        L     +H+  ++SG   +    N L   Y +  
Sbjct: 364 TMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAG 423

Query: 77  KTQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
               AR++F+ + +  + VS+TS++      G  + A+ LF++ML   + P+  T+  V+
Sbjct: 424 SINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVL 483

Query: 136 KACSMLADLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-N 193
            AC+    +  G+     ++        L   + +VD++G+   +  A +  + M    +
Sbjct: 484 SACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPD 543

Query: 194 VVSWTSII 201
           V++W S++
Sbjct: 544 VIAWGSLL 551


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/564 (36%), Positives = 324/564 (57%), Gaps = 4/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
            L+SL  +H    + GFL +    N  +  Y +      A ++F  M    V S+ +L+ 
Sbjct: 416 QLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIG 475

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            +   G P  +L LF  M+ + + P+ FT  +++ AC+ L  L  GK+IH  +   G + 
Sbjct: 476 AHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLEL 535

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  +  SL+ +Y +C+ +   + +FD M  +++V W  +I   +QN    EAL+ FR+  
Sbjct: 536 DEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQM- 594

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                +P +  +  V+ AC+ +  L  GK  H   +++    +  V  AL+DMYAKCG +
Sbjct: 595 LSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCM 654

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             S  +F+R++      +  +I G   +G G  +++LF  M ++G +P+  TF+GVL AC
Sbjct: 655 EQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIAC 714

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +H+GLV EG+++L  M   YG+ P  +HY CVVDMLGR G+L EA KL   +  +PD G 
Sbjct: 715 NHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSG- 773

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W +LLS+ R +G ++I  E S +L+E     A  YV LSN YA  G+W+ V  +R  M
Sbjct: 774 -IWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRM 832

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K  G+HK+ GCSW+EI    Y F   +       ++     +LE+K+ + GY    T  V
Sbjct: 833 KENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGY-KPDTSCV 891

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             ++E+E + +I+  HSE+LA++FGL++  KG T+R+ KNLR+C DCH+  KL+S +V+R
Sbjct: 892 LHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKR 951

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           D +VRD  RFHHF+NG C+CGDFW
Sbjct: 952 DIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 160/299 (53%), Gaps = 5/299 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH+  LK+G  S+ F  N LI  Y +    + A ++F+ M   N+VS+ S+M      G
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENG 275

Query: 108 QPQIALLLFQKML----GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
                  +F+++L      LV P+  T  TVI AC+ + ++  G  +H      G    +
Sbjct: 276 GFGECCGVFKRLLISEEEGLV-PDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEV 334

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V +SLVDMY KC  +  AR +FD+ G +NVVSW +II  +++        E+ +E   +
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE 394

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
            + R N+  + +V+ AC+   +L+S K  HG   R G   +++VA+A V  YAKC S++ 
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           +++VF  +   +V ++ ++I   A+ G    SLDLF  M+  G+ P+  T   +L AC+
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACA 513



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 157/299 (52%), Gaps = 5/299 (1%)

Query: 49  VHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ +  S  L N   L+  +I  Y        +R +FD   E ++  Y +L++GY    
Sbjct: 114 VHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNA 173

Query: 108 QPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + A+ LF ++L    + P+ FT   V KAC+ +AD+  G+ +H      G   +  V 
Sbjct: 174 LFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVG 233

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+ MYGKC  V+ A +VF+ M  RN+VSW S++ A ++N    E   +F+       +
Sbjct: 234 NALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEE 293

Query: 227 R--PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              P+   + +VI ACA++G +  G V HG+  + G      V ++LVDMY+KCG +  +
Sbjct: 294 GLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEA 353

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACS 342
             +F+     +VV++ ++I G +K G  R   +L  EM     ++ N+VT + VL ACS
Sbjct: 354 RALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 152/325 (46%), Gaps = 16/325 (4%)

Query: 134 VIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++AC    ++  G+++H  +  +   + ++V+ + ++ MY  C     +R VFD    +
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           ++  + +++  +++NA   +A+ +F E    +   P+   L  V  ACA +  +  G+  
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG-- 310
           H + +++G   +  V +AL+ MY KCG V  + KVF  + N ++V++ S++   ++ G  
Sbjct: 218 HALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGF 277

Query: 311 ---LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
               G F   L +E    G+ P+  T V V+ AC+  G V  G+  +  +  K GI  + 
Sbjct: 278 GECCGVFKRLLISE--EEGLVPDVATMVTVIPACAAVGEVRMGMV-VHGLAFKLGITEEV 334

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP--LLWGTLLSASRLHGRVDIAVEASN 425
                +VDM  + G L EA  L      D +GG   + W T++      G      E   
Sbjct: 335 TVNNSLVDMYSKCGYLGEARAL-----FDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 426 QLIESNQQVANAYVTLSNTYALAGE 450
           ++    +   N    L+   A +GE
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACSGE 414



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 16/214 (7%)

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +R+ +L    N+    +++ +HAQN                S    ++  +  ++ AC  
Sbjct: 58  QRLHNLCDSGNLNDALNLLHSHAQNGT-------------VSSSDISKEAIGILLRACGH 104

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASA-LVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
              +  G+  H +V  S    NDVV S  ++ MY+ CGS + S  VF+      +  Y +
Sbjct: 105 HKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNA 164

Query: 302 MIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           ++ G ++  L R ++ LF E++S   + P++ T   V  AC+    V+ G + + ++  K
Sbjct: 165 LLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG-EAVHALALK 223

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            G   DA     ++ M G+ G ++ A K+ ++++
Sbjct: 224 AGGFSDAFVGNALIAMYGKCGFVESAVKVFETMR 257


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 343/616 (55%), Gaps = 47/616 (7%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT--QVARQLFDE 87
           ++  +  L  CK+L  +  VH+ IL +G   + + L  LI    +L          +F++
Sbjct: 46  ESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +  PN   Y +L+ GY+   + + +   +  M    V P  FTF  + KAC    D+  G
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG 165

Query: 148 KQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH-- 204
           +QIH   I   GF  +L V +S++DMY KC  ++  R+VFD M  R+V+SWT +I A+  
Sbjct: 166 RQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVK 225

Query: 205 -----------------------------AQNAQGHEALEMF---REFNYQSRDRPNQHM 232
                                        AQNA+  EA+  F   +EF  ++    ++  
Sbjct: 226 SGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVET----DEIT 281

Query: 233 LASVINACASLGRLVSGKVAHGVVVRS--GCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           L  VI+ACA LG          V  +S  G + + VV SAL+DMY+KCGSV  + +VF  
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +V +Y+SMI+G A +G    ++ LF+EM+   IKPN VTF+GVL ACSH+G+V++G
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            Q  + M + YGI P A HYTC+VD+LGR GRL EA++L K++ ++P GG  +WG LL A
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGG--VWGALLGA 459

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
            R+H   DIA  A+N L E        Y+ L+N YA  G W +V ++R  M+  G+ K P
Sbjct: 460 CRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNP 519

Query: 471 GCSWVEI-RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
             SW+E  +   + F++G+    R  E+   L +L  +++ +GY    + + + DV DE 
Sbjct: 520 AFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSY-DVNDED 578

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +  I+  HSE+LALAFGLIS   G  IRI+KNLR+C DCH V    S I  R+ +VRD+ 
Sbjct: 579 KRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIM 638

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF +G CSCG+FW
Sbjct: 639 RFHHFHDGICSCGNFW 654


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 332/557 (59%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS  +K+GF S+ +    LI+ Y +      AR++ + + + +VVS+TS++AGY+    
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL  F++M    VWP+    A+   AC+ +  +  G QIH  +   G+  ++ + ++
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNT 487

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV++Y +C   + A  +F  +  ++ ++W  +I    Q+    +AL +F +   Q+  + 
Sbjct: 488 LVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG-QAGAKY 546

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S I+A A+L  +  GK  HG  V++G      VA+AL+ +Y KCGS+  +  +F
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIF 606

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +S  + V++ ++I   +++G G  +LDLF++M   G+KPNDVTF+GVL ACSH GLV+
Sbjct: 607 SEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 666

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ +  SM   YG+ P   HY CVVD+LGR G+LD A +    + +  +   ++W TLL
Sbjct: 667 EGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANA--MIWRTLL 724

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA ++H  ++I   A+  L+E     + +YV LSN YA+ G+W N   +R  MK  GI K
Sbjct: 725 SACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRK 784

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E+++  +AF+ G+ L     ++   L EL  ++ + GY      L F + E E
Sbjct: 785 EPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNL-FHEKEQE 843

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++    +HSE+LA+AFGL+++P  I +R++KNLR+C DCH   K  S++  R+ V+RDV
Sbjct: 844 QKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDV 903

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF +GSCSCGD+W
Sbjct: 904 YRFHHFNSGSCSCGDYW 920



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+++ K  F S TF  N LI  Y+     ++A ++F +ML  + V++ +L++G+   G 
Sbjct: 166 IHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGH 225

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F +M  + + P+  T A+++ AC+ + DL  GKQ+H+++   G  ++ +   S
Sbjct: 226 GECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS 285

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC D++ A  +F+L    NVV W  ++VA+ Q +   ++ E+F +    +   P
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ-ATGIHP 344

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ     ++  C   G++  G+  H + +++G E +  V+  L+DMY+K G ++ + K+ 
Sbjct: 345 NQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKIL 404

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VV++TSMI G  ++     +L  F EM   G+ P+++       AC+    + 
Sbjct: 405 EMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMR 464

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+Q    +Y   G   D   +  +V++  R GR +EA+ L + I+   +   + W  L+
Sbjct: 465 QGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDE---ITWNGLI 520

Query: 409 SA---SRLH 414
           S    SRL+
Sbjct: 521 SGFGQSRLY 529



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 178/347 (51%), Gaps = 4/347 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +  G  ++    N LI+ Y +      ARQ+F E+   + VS+ ++++GY   G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  L+ +M    V P  +  ++V+ AC+       G+ IH  +    F     V ++
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 169 LVDMYGKCNDVDGARRVF-DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+ +Y        A RVF D++ C + V++ ++I  HAQ   G  AL++F E    S  R
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFC-DRVTFNTLISGHAQCGHGECALQIFDEMQL-SGLR 242

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +AS++ ACAS+G L  GK  H  ++++G  F+ +   +L+D+Y KCG +  +  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN     +VV +  M+V   +      S ++F +M + GI PN  T+  +L  C+ +G +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           + G Q + S+  K G   D      ++DM  + G LD+A K+ + ++
Sbjct: 363 ELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE 408



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 196/404 (48%), Gaps = 5/404 (1%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R  C T A  +        L     +HS +LK+G   +  T   L++ YV+    + A  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F+     NVV +  ++  Y  +     +  +F +M    + PN+FT+  +++ C+    
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ 361

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           +  G+QIH+     GF+ ++ V   L+DMY K   +D AR++ +++  R+VVSWTS+I  
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           + Q+    EAL  F+E        P+   LAS  +ACA +  +  G   H  V  SG   
Sbjct: 422 YVQHDFCEEALATFKEMQ-DCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  + + LV++YA+CG    +  +F  I +   +T+  +I G  +  L + +L +F +M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G K N  TF+  + A ++   + +G Q +     K G   + +    ++ + G+ G +
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALISLYGKCGSI 599

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           ++A  +   + +  +   + W T++++   HGR   A++  +Q+
Sbjct: 600 EDAKMIFSEMSLRNE---VSWNTIITSCSQHGRGLEALDLFDQM 640



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 133/262 (50%), Gaps = 5/262 (1%)

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           +IH      G   + ++ + L+D+Y K   V  AR+VF  +  R+ VSW +++  +AQ+ 
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
            G EA  ++ + ++ +   P  ++L+SV++AC        G++ H  V +        V 
Sbjct: 124 LGKEAFRLYSQMHWTAV-IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +AL+ +Y   GS   +++VF  +     VT+ ++I G A+ G G  +L +F+EM   G++
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VT   +L AC+  G + +G Q L S   K G+  D      ++D+  + G ++ A+ 
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 389 LAKSIQVDPDGGPLLWGTLLSA 410
           +     +      +LW  +L A
Sbjct: 302 I---FNLGDRTNVVLWNLMLVA 320


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 335/572 (58%), Gaps = 7/572 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L +L     +H++++KSGF  N +  + LI+ Y +  +   AR +   + E +V
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T+++AGY        AL LFQ+M    +  +   F++ I AC+ +  L  G+QIH  
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ 541

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G+  +L + ++LV +Y +C     A   F+ +  ++ +SW ++I   AQ+    EA
Sbjct: 542 SYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEA 601

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++F + N Q+    N     S ++A A+   +  GK  H +++++G +     ++ L+ 
Sbjct: 602 LQVFSQMN-QAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLIT 660

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y+KCGS+  + + F  +   +VV++ +MI G +++G G  ++ LF EM   G+ PN VT
Sbjct: 661 LYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVT 720

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FVGVL ACSH GLV+EG+ +  SM +++G++P  +HY CVVD+LGR   L  A +  + +
Sbjct: 721 FVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEM 780

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++PD   ++W TLLSA  +H  ++I   A+  L+E   + +  YV LSN YA++G+W+ 
Sbjct: 781 PIEPDA--MIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDY 838

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
               R  MK  G+ KEPG SW+E+++  +AF+ G+ L     ++   + +L  +  E GY
Sbjct: 839 RDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGY 898

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V  +  L+  DVE E ++    +HSE+LA+AFGL+S+   + IR++KNLR+C DCH+  K
Sbjct: 899 VQDRYNLL-NDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIK 957

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S I  R  VVRD  RFHHF  G CSC D+W
Sbjct: 958 FVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 236/486 (48%), Gaps = 37/486 (7%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+K G  S TF  N L+  Y R      A Q+F +M   + +SY SL++G    G 
Sbjct: 235 LHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGF 294

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+KM  + + P+  T A+++ AC+ +     GKQ+H+++   G   +L++  S
Sbjct: 295 SDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGS 354

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC D++ A   F      NVV W  ++VA+ Q     E+  +F +   +    P
Sbjct: 355 LLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGL-MP 413

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ+   S++  C SLG L  G+  H  V++SG +FN  V S L+DMYAK G ++ +  + 
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+    VV++T+MI G  ++ L   +L LF EM ++GI+ +++ F   + AC+    ++
Sbjct: 474 QRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALN 533

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H  S    Y    D      +V +  R GR  +AY   + I    +   + W  L
Sbjct: 534 QGQQIHAQSYISGYS--EDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN---ISWNAL 588

Query: 408 LSASRLHGRVDIAVEASNQL----IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           +S     G  + A++  +Q+    +E+N     + V+ +   A   + + +H++   M +
Sbjct: 589 ISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAM---MIK 645

Query: 464 TGIHKEPGCSWV---------EIRDQTYAFY--------AGNALFE------RGSEVLSL 500
           TG   E   S V          I D    F+        + NA+         GSE +SL
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSL 705

Query: 501 LRELER 506
             E+++
Sbjct: 706 FEEMKQ 711



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 240/501 (47%), Gaps = 52/501 (10%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+    +H+ I KSGF       + LI+ Y+   +   A +LFD++   NV  +  +++G
Sbjct: 26  LLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISG 85

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS-MLADLITGKQIHTHIETFGFQY 161
            +        L LF  M+   V P+E TFA+V++ACS   A     +QIH  I   GF  
Sbjct: 86  LLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGS 145

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + +VC+ L+D+Y K   VD A+ VF+ +  ++ VSW ++I   +QN +  EA+ +F +  
Sbjct: 146 SPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM- 204

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           ++S   P  ++ +SV++AC  +     G+  HG +V+ G      V +ALV +Y++ G++
Sbjct: 205 HKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNL 264

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             ++++F+++     ++Y S+I G A+ G    +L LF +M    +KP+ VT   +L AC
Sbjct: 265 IAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSAC 324

Query: 342 S-----------HSGLVDEGIQ-------HLDSMYRKYGIIPDAKHYTCVVD-------- 375
           +           HS ++  G+         L  +Y K   I  A  Y    +        
Sbjct: 325 ASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWN 384

Query: 376 -ML---GRTGRLDEAYKLAKSIQVD---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            ML   G+ G L E+Y +   +Q++   P+     + ++L      G +D+  +   Q+I
Sbjct: 385 VMLVAYGQLGNLSESYWIFLQMQIEGLMPN--QYTYPSILRTCTSLGALDLGEQIHTQVI 442

Query: 429 ESNQQVANAYV--TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           +S  Q  N YV   L + YA  GE +    +   ++     +E   SW        A  A
Sbjct: 443 KSGFQF-NVYVCSVLIDMYAKHGELDTARGILQRLR-----EEDVVSWT-------AMIA 489

Query: 487 GNALFERGSEVLSLLRELERK 507
           G    +  +E L L +E+E +
Sbjct: 490 GYTQHDLFAEALKLFQEMENQ 510



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 7/263 (2%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  + + C     L+  K++H  I   GF    V+ S L+D+Y    +VD A ++FD +
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              NV  W  +I          + L +F          P++   ASV+ AC+  G     
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLF-SLMITENVTPDESTFASVLRACS--GGKAPF 128

Query: 250 KVA---HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           +V    H  ++  G   + +V + L+D+Y+K G V+ +  VF R+     V++ +MI G 
Sbjct: 129 QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGL 188

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           ++ G    ++ LF +M    + P    F  VL AC+   L   G + L     K+G+  +
Sbjct: 189 SQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG-EQLHGFIVKWGLSSE 247

Query: 367 AKHYTCVVDMLGRTGRLDEAYKL 389
                 +V +  R G L  A ++
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQI 270



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 13/200 (6%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           R N      +   C + G L+  K  H  + +SG +  DV+ S L+D+Y   G V+ + K
Sbjct: 7   RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIK 66

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ I + +V  +  +I G     L    L LF+ MI+  + P++ TF  VL ACS    
Sbjct: 67  LFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKA 126

Query: 347 ---VDEGIQHLDSMYRKYGIIPDAKHYTC--VVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
              V E I H   ++  +G  P      C  ++D+  + G +D A  + + + +      
Sbjct: 127 PFQVTEQI-HAKIIHHGFGSSP----LVCNPLIDLYSKNGHVDLAKLVFERLFLKDS--- 178

Query: 402 LLWGTLLSASRLHGRVDIAV 421
           + W  ++S    +GR D A+
Sbjct: 179 VSWVAMISGLSQNGREDEAI 198


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 336/588 (57%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I K G  SN F    LI+ Y    +  VAR++FD +L  ++VS+T ++  +     
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF +M      PN FTFA+V KAC  L     GK +H       ++ +L V  +
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y K  D+D ARR F+ +  ++V+ W+ +I  +AQ+ Q  EA+EMF +   Q+   P
Sbjct: 281 LLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMR-QALVLP 339

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ   ASV+ ACA++  L  G   H  V++ G   +  V++AL+D+YAKCG +  S ++F
Sbjct: 340 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF 399

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI------------------------- 323
               + + VT+ ++IVG  + G G  +L LF  M+                         
Sbjct: 400 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 459

Query: 324 ------SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
                 S  +KP+ +TFVGVL AC+++GL+D+G  +  SM + +GI P  +HYTC+V +L
Sbjct: 460 PGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 519

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G LD+A KL   I   P    ++W  LL A  +H  +++   ++ +++E   Q    
Sbjct: 520 GRGGHLDKAVKLIDEIPFQP--SVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKAT 577

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           +V LSN YA A  W+NV S+R  MKR G+ KEPG SW+E +   ++F  G+        +
Sbjct: 578 HVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVI 637

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             +L  L  K K+ GY+     +V +DVEDE +E ++ +HSERLAL+FG+I  P G  IR
Sbjct: 638 NGMLEWLHMKTKKAGYIP-NYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIR 696

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IMKNLR+C DCH   K IS +V+R+ VVRD+NRFHHF+ G CSCGD+W
Sbjct: 697 IMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 175/360 (48%), Gaps = 5/360 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H EILK G   + F  N L+N YV+      A +LFDEM E N +S+ +L+ GY    +
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF ++       N F F T++K          G  IH  I   G + N  V ++
Sbjct: 120 FLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTA 179

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y  C  VD AR VFD +  +++VSWT ++   A+N    EAL++F +       +P
Sbjct: 180 LIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGF-KP 238

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    ASV  AC  L     GK  HG  ++S  E +  V  AL+D+Y K G ++ + + F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAF 298

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I    V+ ++ MI   A+    + ++++F +M    + PN  TF  VL AC+    ++
Sbjct: 299 EEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLN 358

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q +     K G+  D      ++D+  + GR++ + +L       P    + W T++
Sbjct: 359 LGNQ-IHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAE---SPHRNDVTWNTVI 414



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 162/338 (47%), Gaps = 19/338 (5%)

Query: 115 LFQKMLGNLVWPNEF---TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           L Q+ +G+ V P+EF    +A  ++ C    +   GK +H  I   G   +L   + L++
Sbjct: 23  LTQEFVGH-VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLN 81

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K + +  A ++FD M  RN +S+ ++I  +A++ +  EA+E+F   + +  +  N  
Sbjct: 82  MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHEL-NPF 140

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           +  +++    S      G   H  + + G E N  V +AL+D Y+ CG V+ + +VF+ I
Sbjct: 141 VFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGI 200

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
               +V++T M+   A+    + +L LF++M   G KPN+ TF  V  AC      D G 
Sbjct: 201 LYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGK 260

Query: 352 Q-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
             H  ++  +Y +  D      ++D+  ++G +D+A +  + I   P    + W  +++ 
Sbjct: 261 SVHGCALKSRYEL--DLYVGVALLDLYTKSGDIDDARRAFEEI---PKKDVIPWSFMIAR 315

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
              + + D + EA     +  Q      + L N +  A
Sbjct: 316 ---YAQSDQSKEAVEMFFQMRQA-----LVLPNQFTFA 345


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 319/557 (57%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++ SGF  +T   N LI+ Y +      A+++FD     + V++ SL+ GY   G 
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L  F KM+     P+  TF  ++   S LAD+  G+ IH  +  FGF+  L++ +S
Sbjct: 404 YKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC ++D   +VF  M   +++SW ++I +           +M  E   +    P
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGL-MP 521

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++  +  ++  C+ L     GK  HG + +SG E N  + +AL++MY+KCGS+    KVF
Sbjct: 522 DEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVF 581

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VVT+T++I     YG G+ +L  F +M   G+ P+ V F+  + ACSHSG+V 
Sbjct: 582 KYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVK 641

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG++  D M   Y + P  +HY CVVD+L R+G L +A +   S+ + PD    LWG LL
Sbjct: 642 EGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDAS--LWGALL 699

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA R  G  +IA   S +++E N      YV +SN YA  G+W+ V ++R+ MK  G+ K
Sbjct: 700 SACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKK 759

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+EI+ + Y F  G+  FE+  +V  LL  L R M + GYV         DVE++
Sbjct: 760 EPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYV-ADLQFALHDVEED 818

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            + +++  HSERLA+AFGL++   G  + +MKNLR+C DCH V K I+ I++R+ +VRD 
Sbjct: 819 DKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDA 878

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F++G+CSCGD W
Sbjct: 879 NRFHRFKDGACSCGDHW 895



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 204/413 (49%), Gaps = 12/413 (2%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFL 59
           ++LT N +FT A    T   ++        F   +  C  ++ L     VH   ++ GF 
Sbjct: 94  RALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFE 153

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           S+ +  N LI+ Y R      AR +F+EM   + VS+ SL++GY + G  + AL ++ K 
Sbjct: 154 SDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKF 213

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
               + P+ FT ++V+ AC  L  +  G  +H  IE  G   ++++ + L+ MY K   +
Sbjct: 214 RMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERL 273

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             ARRVF  M  ++ V+W ++I  +AQ  +   ++++F +        P+   + S I A
Sbjct: 274 REARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM--IDGFVPDMLSITSTIRA 331

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C   G L  GK  H  ++ SG E + V  + L+DMYAKCG +  + +VF+       VT+
Sbjct: 332 CGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTW 391

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMY 358
            S+I G  + G  +  L+ F +M+    KP+ VTFV +L   S    +++G   H D + 
Sbjct: 392 NSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVI- 449

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
            K+G   +      ++D+  + G +D+  K+   +        + W T++++S
Sbjct: 450 -KFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHD---IISWNTVIASS 498



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 210/446 (47%), Gaps = 17/446 (3%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  ++ L   K+   L +VHS I+ SG   +      LI+ Y ++K    +  +F   +
Sbjct: 22  RSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVF-RSI 80

Query: 90  EP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
            P  NV  + S++    + G    AL  + +M    + P+ FTF +VI +C+ + DL  G
Sbjct: 81  SPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELG 140

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
             +H H    GF+ +L + ++L+DMY +  D+D AR VF+ M  R+ VSW S+I  +  N
Sbjct: 141 CIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSN 200

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               +AL+M+ +F       P+   ++SV+ AC SL  +  G   HGV+ + G   + ++
Sbjct: 201 GFWEDALDMYHKFRMTGM-VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVII 259

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            + L+ MY K   +  + +VF++++    VT+ +MI G A+ G    S+ LF +MI  G 
Sbjct: 260 GNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GF 318

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY----GIIPDAKHYTCVVDMLGRTGRL 383
            P+ ++    + AC  SG +  G         KY    G   D      ++DM  + G L
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVG-----KFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
             A ++  + +       + W +L++     G     +E+   +    +  +  +V L +
Sbjct: 374 LAAQEVFDTTKCKDS---VTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLS 430

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKE 469
            ++   +      +  ++ + G   E
Sbjct: 431 IFSQLADINQGRGIHCDVIKFGFEAE 456



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 140/304 (46%), Gaps = 6/304 (1%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
            EF  ++++K  S   +    + +H+ I T G   +++    L+  Y +  D   +  VF
Sbjct: 18  QEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVF 77

Query: 187 -DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             +    NV  W SII A   N    +AL  + E   + + +P+     SVIN+CA +  
Sbjct: 78  RSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMR-EKKLQPDAFTFPSVINSCARILD 136

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  G + H   +  G E +  + +AL+DMY++   ++ +  VF  +SN   V++ S+I G
Sbjct: 137 LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
               G    +LD++++    G+ P+  T   VL AC     V EG+  +  +  K GI  
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVA-VHGVIEKIGIAG 255

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
           D      ++ M  +  RL EA ++   + V      + W T++      GR + +V+   
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDS---VTWNTMICGYAQLGRHEASVKLFM 312

Query: 426 QLIE 429
            +I+
Sbjct: 313 DMID 316


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/561 (39%), Positives = 327/561 (58%), Gaps = 10/561 (1%)

Query: 49  VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +HS  ++ G+L  + F     ++ Y +  + ++AR LF EM   NVV++ ++M   +  G
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199

Query: 108 QP--QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           +P   I      +  G L  PN  +      AC+    L  G+Q H  +   GF+ ++ V
Sbjct: 200 RPLETIEAYFGLREAGGL--PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 257

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S+VD YGKC     AR VFD MG RN VSW S++ A+AQN    EA   +     +S 
Sbjct: 258 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR-RSG 316

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           + P   M++S +  CA L  L  G+  H V VRS  + N  VASALVDMY KCG V  ++
Sbjct: 317 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 376

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHS 344
           ++F      ++VT+ +MI G A  G  + +L +F++MI  G   PN +T V V+ +CS  
Sbjct: 377 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 436

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GL  +G +  ++M  ++GI P  +HY CVVD+LGR G  ++AY++ + + + P     +W
Sbjct: 437 GLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSIS--VW 494

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G LL A ++HG+ ++   A+ +L E + Q +  +V LSN +A AG W     +R EMK  
Sbjct: 495 GALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNV 554

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           GI K+PGCSWV  ++  + F A +   E  +E+ +LL +L ++M+  GY+   T     D
Sbjct: 555 GIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMP-DTQYSLYD 613

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           +E+E +E  V  HSE+LALAFGLI IP G+ IRIMKNLR+C DCH  FK IS IV R+ +
Sbjct: 614 LEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREII 673

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD NRFHHF+   CSCGD+W
Sbjct: 674 VRDNNRFHHFKQYQCSCGDYW 694



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 175/387 (45%), Gaps = 12/387 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F   HL+N Y +L     A         P VVSYT+ ++G    G+P  AL  F  ML
Sbjct: 50  SPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGML 109

Query: 121 GNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQY--NLVVCSSLVDMYGKCN 177
              + PN+FTF +  KA +      T G QIH+    FG+      V C++L DMY K  
Sbjct: 110 RLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAAL-DMYFKTG 168

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            +  AR +F  M  RNVV+W +++     + +  E +E +     ++   PN     +  
Sbjct: 169 RLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLR-EAGGLPNVVSACAFF 227

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           NACA    L  G+  HG VV+ G E +  V +++VD Y KC     +  VF+ +   + V
Sbjct: 228 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 287

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHLDS 356
           ++ SM+   A+ G    +   +      G +P D      L  C  +GL+   + + L +
Sbjct: 288 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC--AGLLGLHLGRALHA 345

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           +  +  I  +    + +VDM G+ G +++A ++       P    + W  ++      G 
Sbjct: 346 VAVRSCIDANIFVASALVDMYGKCGCVEDAEQI---FYETPQRNLVTWNAMIGGYAHIGD 402

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSN 443
              A+   + +I S +   N Y+TL N
Sbjct: 403 AQNALLVFDDMIRSGETAPN-YITLVN 428



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ L    ++H+  ++S   +N F  + L++ Y +    + A Q+F E  + N+
Sbjct: 328 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 387

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQI-H 151
           V++ +++ GY ++G  Q ALL+F  M+      PN  T   VI +CS       G ++  
Sbjct: 388 VTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFE 447

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQN 207
           T  E FG +      + +VD+ G+    + A  V   M  R  +S W +++ A   H + 
Sbjct: 448 TMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKT 507

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             G  A E   E + Q       H+L S  N  AS GR
Sbjct: 508 ELGRIAAEKLFELDPQDS---GNHVLLS--NMFASAGR 540


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 330/572 (57%), Gaps = 8/572 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L +L     VH +I + GF S+ F  N L+  Y +  +   A  +F  +++  +
Sbjct: 180 LKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTI 239

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+TS+++GY   GQP  AL +F +M    V P+     +V++A + + DL  GK IH  
Sbjct: 240 VSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGC 299

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +   G +    +  SL  +Y KC  V  AR  F+ +   +++ W ++I  + +N    EA
Sbjct: 300 VIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEA 359

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +E+FR    ++  RP+   + S I ACA +G L   +     +  S    + +V ++L+D
Sbjct: 360 IELFRLMKSKNI-RPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLID 418

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
            YAKCGSV+ +  VF+RI +  VV +++M+VG   +G GR S+ LF+ M   G+ PNDVT
Sbjct: 419 TYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVT 478

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FVG+L AC +SGLV+EG      M R YGI P  +HY CVVD+LGR G LD AY    ++
Sbjct: 479 FVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNM 537

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P  G  +WG LLSA ++H  V +   A+ +L   +      YV LSN YA +  W+ 
Sbjct: 538 PIEP--GVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDC 595

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V  +R  M+  G+ K  G S +EI  +  AF AG+    R  E+   + +LER++KE G+
Sbjct: 596 VAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGF 655

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V  D+  E  EE +  HSERLA+A+GLIS P G T+RI KNLR C +CH   K
Sbjct: 656 VP-HTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIK 714

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LIS +V R+ VVRD  RFHHF++G+CSCGD+W
Sbjct: 715 LISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 198/377 (52%), Gaps = 9/377 (2%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           H   L  +++++L +G     F +  L+N    + +   AR+LFD+  +P+V  + +++ 
Sbjct: 87  HKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVR 146

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            Y   G    A+ ++ +M    V P+ F+F  V+KACS L  L  G+++H  I   GF+ 
Sbjct: 147 CYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFES 206

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V + LV +Y KC ++  A  VF  +  R +VSWTSII  +AQN Q  EAL +F E  
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMR 266

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCG 279
            ++  RP+   L SV+ A   +  L  GK  HG V++ G  CEF+ ++  +L  +YAKCG
Sbjct: 267 -KTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLI--SLTSLYAKCG 323

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            V  +   FN++ NPS++ + +MI G  K G    +++LF  M S+ I+P+ +T    + 
Sbjct: 324 HVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIA 383

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           AC+  G + E  + +D          D    T ++D   + G +D A  +   I   PD 
Sbjct: 384 ACAQIGSL-ELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRI---PDK 439

Query: 400 GPLLWGTLLSASRLHGR 416
             ++W  ++    LHG+
Sbjct: 440 DVVVWSAMMVGYGLHGQ 456



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 150/318 (47%), Gaps = 17/318 (5%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           S + + N R         ++   + + L    S+H  ++K G       L  L + Y + 
Sbjct: 263 SEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKC 322

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
               VAR  F+++  P+++ + ++++GY+  G  + A+ LF+ M    + P+  T  + I
Sbjct: 323 GHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSI 382

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
            AC+ +  L   + +  +I    F+ +++V +SL+D Y KC  VD AR VFD +  ++VV
Sbjct: 383 AACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVV 442

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
            W++++V +  + QG E++ +F     Q+   PN      ++ AC + G +  G      
Sbjct: 443 VWSAMMVGYGLHGQGRESIILFHAMR-QAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHR 501

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN----PSVVTYTSMI-------- 303
           +   G E      + +VD+  + G +   D+ +N + N    P V  + +++        
Sbjct: 502 MRDYGIEPRHQHYACVVDLLGRAGHL---DRAYNFVMNMPIEPGVSVWGALLSACKIHRH 558

Query: 304 VGAAKYGLGR-FSLDLFN 320
           V   +Y   R FSLD +N
Sbjct: 559 VTLGEYAAERLFSLDPYN 576


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 335/559 (59%), Gaps = 8/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLI-NCYVR-LKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           VH+++LK     N+F  ++L+  C +        A  +F ++ +P    + +++ GY+N+
Sbjct: 7   VHAQVLK---WENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNV 63

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
              + AL L+ +ML   V  + FT+  + KAC+ L  +  G QIH +I   G + +L V 
Sbjct: 64  MNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQ 123

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL++MYGKC  ++ +  VF+ M  R+V SW++II AHA      E L +F E + +   
Sbjct: 124 NSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSC 183

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RP + +L SV++AC  LG L  G+  H  ++R+  E N +V ++L+DMY KCG +     
Sbjct: 184 RPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLS 243

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F R+   + ++Y+ MI G A +G G  +L +F++M+  G+KP+DV ++GVL AC+H+GL
Sbjct: 244 LFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGL 303

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG+Q  + M  ++GI P  +HY C+V ++GR G L++A +  +S+ + P+   ++W  
Sbjct: 304 VDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPN--EVVWRG 361

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LLSA + H  ++I   A+  L E N      YV LSN YA A  WE+V  +R+EM R G 
Sbjct: 362 LLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGF 421

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            + PG S V++  + Y F + +    +   +  ++ ++E ++K  GY    T  V  DV+
Sbjct: 422 TQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGY-SPDTSQVLFDVD 480

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E + + +  HS++LA+AF LI   +G  IRI +NLRMC DCH   KLIS I +R+  VR
Sbjct: 481 EEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVR 540

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G+CSC D+W
Sbjct: 541 DRNRFHHFKDGTCSCRDYW 559


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/565 (39%), Positives = 327/565 (57%), Gaps = 15/565 (2%)

Query: 48  SVHSEILKSGFLSN---TFTLNHLINCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAG 102
           + H++I+K+  L N   +F  NHL+N Y +L +   A+ L    L PN  VV++T+L+AG
Sbjct: 27  AAHAQIIKT--LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLS--LTPNRSVVTWTALIAG 82

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            +  G+   AL  F  M  + + PN+FTF    KA   L   + GKQ+H      G   +
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V  S  DMY K    + AR++FD M  RN+ +W + +       +  +AL  F E   
Sbjct: 143 VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARK 202

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +  + P   M++SV++ACA L  L  GK  H + V++    N  V SALVDMY KCGS+ 
Sbjct: 203 EGIE-PTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 261

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHA 340
            +++ F+ +   ++VT+ +MI G A  G    ++ LF+EM   S  + PN VTFV VL A
Sbjct: 262 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSA 321

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CS +G V+ G++  +SM  +YGI P A+HY CVVD+LGR G +++AY+  K + + P   
Sbjct: 322 CSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVS 381

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +WG LL AS++ G+ ++   A++ L E +   +  +V LSN +A AG WE    +R E
Sbjct: 382 --VWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKE 439

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           MK  GI K  GCSW+   +  + F A +   ER SE+ ++L +L  +M+  GY+   T  
Sbjct: 440 MKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIP-DTSF 498

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
              D+E+E +   V  HSE++ALAFGLISIP G+ IRI KNLR+C DCH   K IS IV 
Sbjct: 499 ALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVG 558

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ +VRD N FH FR+  CSC D+W
Sbjct: 559 REIIVRDNNLFHRFRDNQCSCRDYW 583


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 328/559 (58%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  +K+G +S+ F      + Y +   T+ AR++FDEM E N+ ++ + ++  +  G+
Sbjct: 130 VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGR 189

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  F +       PN  TF   + AC+  + L  G+Q+H  +   GF+ ++ V + 
Sbjct: 190 YDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANG 249

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D YGKC+ V  +  +F  +   N VSW S+IV++ QN +  +A  +F     +  + P
Sbjct: 250 LIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIE-P 308

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
              M++SV++ACA L  L  GK  H + V++    N  V SALVDMY KCGS+  +++ F
Sbjct: 309 TDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAF 368

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGL 346
           + +   ++VT+ +MI G A  G    ++ LF+EM   S  + PN VTFV VL ACS +G 
Sbjct: 369 DEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGS 428

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V+ G++  +SM  +YGI P A+HY CVVD+LGR G +++AY+  K + + P     +WG 
Sbjct: 429 VNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVS--VWGA 486

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL AS++ G+ ++   A++ L E +   +  +V LSN +A AG WE    +R EMK  GI
Sbjct: 487 LLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGI 546

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K  GCSW+   +  + F A +   ER SE+ ++L +L  +M+  GY+   T     D+E
Sbjct: 547 KKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIP-DTSFALFDLE 605

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +   V  HSE++ALAFGLISIP G+ IRI KNLR+C DCH   K IS IV R+ +VR
Sbjct: 606 EEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVR 665

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D N FH FR+  CSC D+W
Sbjct: 666 DNNLFHRFRDNQCSCRDYW 684



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 203/399 (50%), Gaps = 14/399 (3%)

Query: 48  SVHSEILKSGFLSN---TFTLNHLINCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAG 102
           + H++I+K+  L N   +F  NHL+N Y +L +   A+ L    L PN  VV++T+L+AG
Sbjct: 27  AAHAQIIKT--LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLS--LTPNRSVVTWTALIAG 82

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            +  G+   AL  F  M  + + PN+FTF    KA   L   + GKQ+H      G   +
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V  S  DMY K    + AR++FD M  RN+ +W + +       +  +AL  F EF +
Sbjct: 143 VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRH 202

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +  + PN     + +NACA    L  G+  HG V++SG E +  VA+ L+D Y KC  V 
Sbjct: 203 EGWE-PNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S+ +F+ IS P+ V++ SMIV   +      +  +F      GI+P D     VL AC+
Sbjct: 262 CSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACA 321

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
              +++ G + + ++  K  ++ +    + +VDM G+ G +++A +    +   P+   +
Sbjct: 322 GLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEM---PERNLV 377

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            W  ++      G+ D+AV   +++   + +VA  YVT 
Sbjct: 378 TWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTF 416


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/553 (38%), Positives = 318/553 (57%), Gaps = 43/553 (7%)

Query: 53  ILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           + +   + + FT   +++ YV+      AR++FD M E N VS+ +++AGY+   +   A
Sbjct: 257 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 316

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
             LF+ M                  C                       N+   ++++  
Sbjct: 317 RELFEAM-----------------PCQ----------------------NVSSWNTMITG 337

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y +  D+  AR  FD M  R+ +SW +II  +AQ+  G EAL +F E   +  +R N+  
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMK-RDGERLNRST 396

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
             S ++ CA +  L  GK  HG VV++G E    V +AL+ MY KCG+++ +  VF  I 
Sbjct: 397 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 456

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
              VV++ +MI G A++G G+ +L LF  M   GI P+DVT VGVL ACSH+GLVD+G +
Sbjct: 457 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 516

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           +  SM + YGI  ++KHYTC++D+LGR GRLD+A  L K++  +PD     WG LL ASR
Sbjct: 517 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT--WGALLGASR 574

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG  ++  +A+  + E     +  YV LSN YA +G W +V  +R  M+  G+ K PG 
Sbjct: 575 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGY 634

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           SWVE++++ + F  G+++      + + L EL+ KMK+ GYV   T LV  DVE+E +  
Sbjct: 635 SWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYV-SSTKLVLHDVEEEEKVH 693

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           ++  HSE+LA+AFG+++IP G  IR++KNLR+C DCH+  K IS IV R  ++RD +RFH
Sbjct: 694 MLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFH 753

Query: 593 HFRNGSCSCGDFW 605
           HF  G CSCGD+W
Sbjct: 754 HFNGGQCSCGDYW 766



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 135/276 (48%), Gaps = 6/276 (2%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           E+ ++    N  + N +I  Y +      AR  FD M + + +S+ +++AGY   G  + 
Sbjct: 318 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           AL LF +M  +    N  TF + +  C+ +A L  GKQ+H  +   G +    V ++L+ 
Sbjct: 378 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLV 437

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC ++D A  VF+ +  + VVSW ++I  +A++  G EAL +F     ++   P+  
Sbjct: 438 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK-KTGILPDDV 496

Query: 232 MLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
            +  V++AC+  G +  G +  + +    G   N    + ++D+  + G ++ +  +   
Sbjct: 497 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 556

Query: 291 IS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEM 322
           +   P   T+ +++  +  +G   LG  +  +  EM
Sbjct: 557 MPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 592



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 163/380 (42%), Gaps = 46/380 (12%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           + N +I+  VR +  + AR LFD+M E +VVS+ ++++GY   G  + A  +F       
Sbjct: 113 SWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF------- 165

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDG 181
              +E      I    MLA  +   +I      F  +  + L+  + ++  Y K N +  
Sbjct: 166 ---DEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVD 222

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR +FD M  R+ VSW ++I  +AQN +  EA  +F E   +        +   V N   
Sbjct: 223 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGML 282

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVA--------------------------SALVDMY 275
              R    +V  G+  ++   +N ++A                          + ++  Y
Sbjct: 283 DEAR----RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 338

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           A+ G +  +   F+R+     +++ ++I G A+ G G  +L LF EM   G + N  TF 
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 398

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
             L  C+    ++ G Q +     K G+         ++ M  + G +D+AY + + I+ 
Sbjct: 399 STLSTCAEIAALELGKQ-VHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE- 456

Query: 396 DPDGGPLLWGTLLSASRLHG 415
             +   + W T+++    HG
Sbjct: 457 --EKEVVSWNTMIAGYARHG 474



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 176/416 (42%), Gaps = 42/416 (10%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----------NVVSYTSLMAGYINMGQP 109
           SN F   H  +C   L+ T  A +      +P          ++V +   +  ++  GQ 
Sbjct: 6   SNRFRQLHSRSCLRSLQTTTTANRKPSTRNQPKTTSSLATDADIVKWNIAITNHMRNGQC 65

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             AL LF  M       +  ++  +I  C         +Q+   + T     +LV  + +
Sbjct: 66  DSALRLFNSMPRR----SSISWNAMISGCLSNDKFYLARQLFEKMPT----RDLVSWNVM 117

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +    +  ++  AR +FD M  R+VVSW +++  +AQN    EA E+F E   ++    N
Sbjct: 118 ISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 177

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
             + A V N     GR+   +     +  S  ++  +  + ++  Y K   +  +  +F+
Sbjct: 178 GMLAAYVQN-----GRIEDAR----RLFESKADWELISWNCMMGGYVKRNRLVDARGIFD 228

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
           R+     V++ +MI G A+ G    +  LF E   R +     T+  ++     +G++DE
Sbjct: 229 RMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDE 284

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
             +  D M  K  +      +  ++    +  R+D+A +L +++   P      W T+++
Sbjct: 285 ARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAM---PCQNVSSWNTMIT 336

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
               +G  DIA +A N      Q+ + ++  +   YA +G  E    L  EMKR G
Sbjct: 337 GYAQNG--DIA-QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 13/224 (5%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++ F   L  C  + +L     VH  ++K+G  S  +  N L+  Y +      A  +F+
Sbjct: 394 RSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFE 453

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            + E  VVS+ +++AGY   G  + AL+LF+ M    + P++ T   V+ ACS    +  
Sbjct: 454 GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDK 513

Query: 147 GKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA- 203
           G +  ++  + +G   N    + ++D+ G+   +D A+ +   M    +  +W +++ A 
Sbjct: 514 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 573

Query: 204 --HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             H     G +A +M  E      +  N  M   + N  A+ GR
Sbjct: 574 RIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLSNLYAASGR 612


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/556 (37%), Positives = 329/556 (59%), Gaps = 5/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+  ++SG          +++ Y +    + AR +FD M   N VS+ +++ GY   G  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           + AL LF +M+   V   + +    ++AC  L  L  G ++H  +   G   N+ V ++L
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           + MY KC  VD A  VFD +  R  VSW ++I+  AQN    +A+ +F     ++  +P+
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV-KPD 362

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L SVI A A +   +  +  HG  +R   + +  V +AL+DMYAKCG VN +  +FN
Sbjct: 363 SFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFN 422

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
                 V+T+ +MI G   +G G+ +++LF EM S GI PN+ TF+ VL ACSH+GLVDE
Sbjct: 423 SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDE 482

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G ++  SM   YG+ P  +HY  +VD+LGR G+LDEA+   + + +DP  G  ++G +L 
Sbjct: 483 GREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDP--GLSVYGAMLG 540

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A +LH  V++A E++ ++ E   Q    +V L+N YA A  W++V  +R+ M++ G+ K 
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG S ++++++ + FY+G+   ++  E+ S L +L  ++K  GYV     +   DVED+ 
Sbjct: 601 PGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI--HDVEDDV 658

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           + +++  HSE+LA+AFGLI    G TI+I KNLR+C DCH+  KLIS +  R+ ++RD+ 
Sbjct: 659 KAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQ 718

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF++G CSCGD+W
Sbjct: 719 RFHHFKDGKCSCGDYW 734



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 193/405 (47%), Gaps = 31/405 (7%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C     LA+   VH+++   G  S       L N Y + ++   AR++FD M 
Sbjct: 62  FTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMP 121

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGK 148
             + V++ +L+AGY   G  ++A+ +  +M       P+  T  +V+ AC+    L   +
Sbjct: 122 VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACR 181

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           + H      G +  + V ++++D Y KC D+  AR VFD M  +N VSW ++I  +AQN 
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL +F     +  D  +  +LA+ + AC  LG L  G   H ++VR G + N  V 
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAA-LQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +AL+ MY+KC  V+ +  VF+ +   + V++ +MI+G A+ G    ++ LF  M    +K
Sbjct: 301 NALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQ-----------HLDSMYRKYGIIPDAKHYTCVVDML 377
           P+  T V V+ A +    + + +Q           HLD          D    T ++DM 
Sbjct: 361 PDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLHLDQ---------DVYVLTALIDMY 408

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            + GR++ A  L  S +   +   + W  ++     HG    AVE
Sbjct: 409 AKCGRVNIARILFNSAR---ERHVITWNAMIHGYGSHGFGKAAVE 450



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 1/275 (0%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           AL  F  M      P   TF +++K C+   DL TG+ +H  +   G     +  ++L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC     ARRVFD M  R+ V+W +++  +A+N     A+EM      +  +RP+  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L SV+ ACA+   L + + AH   +RSG E    VA+A++D Y KCG +  +  VF+ +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
              + V++ +MI G A+ G  R +L LFN M+  G+   DV+ +  L AC   G +DEG+
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + +  +  + G+  +      ++ M  +  R+D A
Sbjct: 283 R-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLA 316


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 332/569 (58%), Gaps = 5/569 (0%)

Query: 38  QECKHLISLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           +E    + L  +H   L+ GF+ S+    N  +  Y +      A  +F  M    V S+
Sbjct: 411 EEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSW 470

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +L+ G++  G P+ AL L+  M G+ + P+ FT A+++ AC+ L  L  GK+IH  +  
Sbjct: 471 NALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLR 530

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF+ +  +C SLV +Y +C  +  A+  FD M  +N+V W ++I   +QN    +AL+M
Sbjct: 531 NGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDM 590

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F +    S+  P++  +   + AC+ +  L  GK  H   V+S    +  V  +L+DMYA
Sbjct: 591 FHQM-LSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYA 649

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG +  S  +F+R+     VT+  +I G   +G GR +++LF  M + G +P+ VTF+ 
Sbjct: 650 KCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIA 709

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L AC+H+GLV EG+++L  M   +GI P  +HY CVVDMLGR GRL+EA +L   +   
Sbjct: 710 LLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDK 769

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           PD    +W +LLS+ R +  +DI  + +N+L+E     A  YV +SN YA  G+W+ V  
Sbjct: 770 PDSR--IWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRK 827

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG 516
           +R  MK  G+ K+ GCSW+EI  +   F  G+    +  ++     ELE+K+ + GY   
Sbjct: 828 MRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGY-KP 886

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
            T  V  ++E++ + +I+  HSE+LA++FGL++  KG T+R+ KNLR+C DCH+  KL+S
Sbjct: 887 DTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVS 946

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            I +R+ +VRD  RFHHF+NG CSCGD+W
Sbjct: 947 KIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 165/315 (52%), Gaps = 4/315 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH   LK+  LS+ F  N LI  Y +    + A ++FD+M + N+VS+ S+M   +  G
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 108 QPQIALLLFQKMLG--NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             + +  LF+ +L     + P+  T  TVI  C+   ++  G   H      G    L V
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKV 336

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            SSL+DMY KC  +  AR +FD    +NV+SW S+I  ++++     A E+ R+   + +
Sbjct: 337 NSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAKCGSVNYS 284
            + N+  L +V+  C    + +  K  HG  +R G  + +++VA+A V  YAKCGS++Y+
Sbjct: 396 VKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYA 455

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
           + VF  + +  V ++ ++I G  + G  R +LDL+  M   G++P+  T   +L AC+  
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL 515

Query: 345 GLVDEGIQHLDSMYR 359
             +  G +   SM R
Sbjct: 516 KSLSCGKEIHGSMLR 530



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 144/274 (52%), Gaps = 10/274 (3%)

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLA 142
           +F+     N+  + +L++GY+     + A+ +F +M+    + P+ FT   VIKAC  + 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           D+  G+ +H          ++ V ++L+ MYGK   V+ A +VFD M  RN+VSW S++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 203 AHAQNAQGHEALEMFRE-FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           A  +N    E+  +F+   N      P+   + +VI  CA  G +  G V HG+ ++ G 
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
                V S+L+DMY+KCG +  +  +F+  +  +V+++ SMI G +K    R + +L  +
Sbjct: 331 CGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRK 389

Query: 322 M-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           M +   +K N+VT + VL  C      +E IQ L
Sbjct: 390 MQMEDKVKVNEVTLLNVLPVC------EEEIQFL 417



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 129/256 (50%), Gaps = 4/256 (1%)

Query: 134 VIKACSMLADLITGKQIHTHIETFG-FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++ C    ++  G++IH  I T   FQ ++V+ + LV MY  C+    +  VF+    +
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           N+  W +++  + +N+   +A+ +F E    +   P+   L  VI AC  +  +  G+  
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG  +++    +  V +AL+ MY K G V  + KVF+++   ++V++ S++    + G+ 
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVF 278

Query: 313 RFSLDLFNEMIS--RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
             S  LF  +++   G+ P+  T V V+  C+  G V  G+     +  K G+  + K  
Sbjct: 279 EESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMV-FHGLALKLGLCGELKVN 337

Query: 371 TCVVDMLGRTGRLDEA 386
           + ++DM  + G L EA
Sbjct: 338 SSLLDMYSKCGYLCEA 353


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/556 (37%), Positives = 329/556 (59%), Gaps = 5/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+  ++SG          +++ Y +    + AR +FD M   N VS+ +++ GY   G  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           + AL LF +M+   V   + +    ++AC  L  L  G ++H  +   G   N+ V ++L
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           + MY KC  VD A  VFD +  R  VSW ++I+  AQN    +A+ +F     ++  +P+
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV-KPD 362

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L SVI A A +   +  +  HG  +R   + +  V +AL+DMYAKCG VN +  +FN
Sbjct: 363 SFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFN 422

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
                 V+T+ +MI G   +G G+ +++LF EM S GI PN+ TF+ VL ACSH+GLVDE
Sbjct: 423 SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDE 482

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G ++  SM   YG+ P  +HY  +VD+LGR G+LDEA+   + + +DP  G  ++G +L 
Sbjct: 483 GREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDP--GLSVYGAMLG 540

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A +LH  V++A E++ ++ E   Q    +V L+N YA A  W++V  +R+ M++ G+ K 
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG S ++++++ + FY+G+   ++  E+ S L +L  ++K  GYV     +   DVED+ 
Sbjct: 601 PGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI--HDVEDDV 658

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           + +++  HSE+LA+AFGLI    G TI+I KNLR+C DCH+  KLIS +  R+ ++RD+ 
Sbjct: 659 KAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQ 718

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF++G CSCGD+W
Sbjct: 719 RFHHFKDGKCSCGDYW 734



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 193/405 (47%), Gaps = 31/405 (7%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C     LA+   VH+++   G  S       L N Y + ++   AR++FD M 
Sbjct: 62  FTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMP 121

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGK 148
             + V++ +L+AGY   G  ++A+ +  +M       P+  T  +V+ AC+    L   +
Sbjct: 122 VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACR 181

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           + H      G +  + V ++++D Y KC D+  AR VFD M  +N VSW ++I  +AQN 
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL +F     +  D  +  +LA+ + AC  LG L  G   H ++VR G + N  V 
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAA-LQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +AL+ MY+KC  V+ +  VF+ +   + V++ +MI+G A+ G    ++ LF  M    +K
Sbjct: 301 NALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQ-----------HLDSMYRKYGIIPDAKHYTCVVDML 377
           P+  T V V+ A +    + + +Q           HLD          D    T ++DM 
Sbjct: 361 PDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLHLDQ---------DVYVLTALIDMY 408

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            + GR++ A  L  S +   +   + W  ++     HG    AVE
Sbjct: 409 AKCGRVNIARILFNSAR---ERHVITWNAMIHGYGSHGFGKAAVE 450



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 1/275 (0%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           AL  F  M      P   TF +++K C+   DL TG+ +H  +   G     +  ++L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC     ARRVFD M  R+ V+W +++  +A+N     A+EM      +  +RP+  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L SV+ ACA+   L + + AH   +RSG E    VA+A++D Y KCG +  +  VF+ +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
              + V++ +MI G A+ G  R +L LFN M+  G+   DV+ +  L AC   G +DEG+
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + +  +  + G+  +      ++ M  +  R+D A
Sbjct: 283 R-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLA 316


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 330/577 (57%), Gaps = 39/577 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-N 122
           + N +++    L +  +A  LF+ M +  +VS+ +++AGY   G    AL  F +ML  +
Sbjct: 230 SWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYS 289

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + P+EFT  +V+ AC+ L  +  GKQ+H +I      Y   V ++L+ MY K   V+ A
Sbjct: 290 TMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENA 349

Query: 183 RRV---------------------------------FDLMGCRNVVSWTSIIVAHAQNAQ 209
           R V                                 FD+M  R+VV+WT++IV + QN  
Sbjct: 350 RGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGH 409

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+E+FR    +S   PN + +A+V++ CASL  L  GK  H   +RS  E +  V++
Sbjct: 410 NDEAMELFR-LMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSN 468

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++V MYA+ GS+ ++ +VF+R+      VT+TSMIV  A++GLG  ++ LF EM+  G+K
Sbjct: 469 SIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVK 528

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ +TFVGVL AC+H G VDEG ++   +  K+GI+P+  HY C+VD+L R G   EA +
Sbjct: 529 PDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQE 588

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + V+PD   + WG+LLSA R+H   D+A  A+ +L+  +   + AY  LSN Y+  
Sbjct: 589 FIQQMPVEPDA--IAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSAC 646

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W +   +    K   + KE G SW  I ++ + F A + L  +   V     ++   +
Sbjct: 647 GRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDI 706

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K+ G+V      V  DV+DE +EE++  HSE+LA+AFGL+S P+  T+RIMKNLR+C DC
Sbjct: 707 KKAGFVPDLQS-VLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDC 765

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS + +R+ ++RD  RFHHF++G CSC D+W
Sbjct: 766 HTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 195/429 (45%), Gaps = 75/429 (17%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N FT N L++ Y +  +   AR +F EM E + VS+T ++ G   +G+   A+ +F  M+
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            + + P +FT   V+ +C+       G+++H+ +   G    + V +S+++MYGKC D +
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 181 GARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNAQ 209
            AR VF+ M  R+V                               VSW ++I  + QN  
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +AL  F      S   P++  + SV++ACA+LG +  GK  H  ++RS   +   V +
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN 334

Query: 270 ALVDMYAKCGSV---------------------------------NYSDKVFNRISNPSV 296
           AL+ MYAK GSV                                  ++ ++F+ +SN  V
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDV 394

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ---- 352
           V +T+MIVG  + G    +++LF  MI  G +PN  T   VL  C+    ++ G Q    
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCK 454

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
            + S+  +   + ++     +V M  R+G L  A ++   +    +   + W +++ A  
Sbjct: 455 AIRSLQEQSSSVSNS-----IVTMYARSGSLPWARRVFDRVHWRKE--TVTWTSMIVALA 507

Query: 413 LHGRVDIAV 421
            HG  + AV
Sbjct: 508 QHGLGEDAV 516



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%)

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
           E    Q N+   +SL+ +Y K   +  AR VF  M  R+ VSWT ++V   +  +  EA+
Sbjct: 88  EIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAI 147

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           +MF +        P Q  L +V+++CA+      G+  H  VV+ G      VA+++++M
Sbjct: 148 KMFLDMVTDGLS-PTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCG    +  VF R+   SV ++ +M+   A  G    +L LF  M  R I    V++
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTI----VSW 262

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
             V+   + +GL  + +     M     + PD    T V+      G
Sbjct: 263 NAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLG 309



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 46/258 (17%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           +H + ++S    ++   N ++  Y R      AR++FD +      V++TS++      G
Sbjct: 451 IHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + A+ LF++ML   V P+  TF  V+ AC+ +  +  GK+         FQ       
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRY--------FQ------- 555

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
            L D +G   ++     + DL+    + S               EA    +EF  Q    
Sbjct: 556 QLQDKHGIVPEMSHYACMVDLLARAGLFS---------------EA----QEFIQQMPVE 596

Query: 228 PNQHMLASVINAC-----ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           P+     S+++AC     A L  L + K+   + +  G   N    SAL ++Y+ CG  N
Sbjct: 597 PDAIAWGSLLSACRVHKNADLAELAAEKL---LSIDPG---NSGAYSALSNVYSACGRWN 650

Query: 283 YSDKVFNRISNPSVVTYT 300
            + K++ R  + SV   T
Sbjct: 651 DAAKIWKRRKDKSVKKET 668


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/599 (36%), Positives = 335/599 (55%), Gaps = 37/599 (6%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           + +++   VH + ++ GF S+    N LI+ Y + + ++ AR +F+ M   +V+S+TS+ 
Sbjct: 92  RDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMA 151

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
           + Y+N G  + AL  F+KM  N   PN  T ++++ AC+ L DL +G+++H  +   G  
Sbjct: 152 SCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMG 211

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE- 219
            N+ V S+LV+MY  C  +  A+ VFD M  R+ VSW  +I A+  N +  + L +F   
Sbjct: 212 GNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRM 271

Query: 220 ------FNYQSRD---------------------------RPNQHMLASVINACASLGRL 246
                  NY S +                           +PNQ  + SV+ AC +L  L
Sbjct: 272 MSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESL 331

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  HG + R     +    +ALV MYAKCG +  S +VF+ ++    V++ +MI+  
Sbjct: 332 RGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIAT 391

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           + +G G  +L LF EM+  G++PN VTF GVL  CSHS LVDEG+   DSM R + + PD
Sbjct: 392 SMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPD 451

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
           A H++C+VD+L R GRL+EAY+  K + ++P  G   WG LL   R++  V++   A+N+
Sbjct: 452 ADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGA--WGALLGGCRVYKNVELGRIAANR 509

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           L E        YV LSN    A  W      R  M+  G+ K PGCSW+++R++ + F  
Sbjct: 510 LFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVV 569

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+   ++  E+   L  +  KM+  GY+   T  V  DV+ E +EE++  HSE+LA+AFG
Sbjct: 570 GDKSNDQSDEIYRFLDYMGEKMRIAGYL-PNTDFVLQDVDQEEKEEVLCNHSEKLAVAFG 628

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++++    +IR+ KNLR+C DCH+  K ++ IV    +VRD  RFHHFR+G CSC DFW
Sbjct: 629 VLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 195/399 (48%), Gaps = 41/399 (10%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWP 126
            I  Y      Q AR LFD++ +P++ ++T L++     G+   A+  +      N V P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           ++    +V KAC+ L D++  K++H     FGF  ++++ ++L+DMYGKC   +GAR VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           + M  R+V+SWTS+   +       EAL  FR+      +RPN   ++S++ AC  L  L
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNG-ERPNSVTVSSILPACTDLKDL 195

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV-- 304
            SG+  HG VVR+G   N  V+SALV+MYA C S+  +  VF+ +S    V++  +I   
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAY 255

Query: 305 ---------------------------------GAAKYGLGRFSLDLFNEMISRGIKPND 331
                                            G  + G    +L++ + M + G KPN 
Sbjct: 256 FLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQ 315

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T   VL AC++   +  G Q    ++R +    D    T +V M  + G L+ + ++  
Sbjct: 316 ITITSVLPACTNLESLRGGKQIHGYIFRHW-FFQDLTTTTALVFMYAKCGDLELSRRVF- 373

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           S+    D   + W T++ A+ +HG  + A+    ++++S
Sbjct: 374 SMMTKRD--TVSWNTMIIATSMHGNGEEALLLFREMVDS 410



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 51/347 (14%)

Query: 23  KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR 82
           +R +  T +  +    + K L S   VH  ++++G   N F  + L+N Y      + A+
Sbjct: 175 ERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQ 234

Query: 83  QLFDEMLEPNVVSYTSLMAGY-----------------------------------INMG 107
            +FD M   + VS+  L+  Y                                   +  G
Sbjct: 235 LVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNG 294

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + AL +  +M  +   PN+ T  +V+ AC+ L  L  GKQIH +I    F  +L   +
Sbjct: 295 RTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTT 354

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LV MY KC D++ +RRVF +M  R+ VSW ++I+A + +  G EAL +FRE    S  R
Sbjct: 355 ALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREM-VDSGVR 413

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA------SALVDMYAKCGSV 281
           PN      V++ C S  RLV      G+++      +  V       S +VD+ ++ G +
Sbjct: 414 PNSVTFTGVLSGC-SHSRLVD----EGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRL 468

Query: 282 NYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEMIS 324
             + +   ++   P+   + +++ G   Y    LGR + +   E+ S
Sbjct: 469 EEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIES 515



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           +A   + +Y+  G +  +  +F++I  P + T+T +I    K+G    ++  +N+   + 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 327 -IKPNDVTFVGVLHAC-SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            ++P+ +  + V  AC S   +++    H D++  ++G   D      ++DM G+  R  
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAI--RFGFCSDVLLGNALIDMYGKC-RCS 129

Query: 385 EAYKL 389
           E  +L
Sbjct: 130 EGARL 134


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 327/560 (58%), Gaps = 8/560 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+HS ++K+GF  + F    L+  Y +      AR++FDE+ E NVVS+T+++ GYI  G
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               AL LF+ +L   + P+ FT   ++ ACS + DL +G+ I  ++   G   N+ V +
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVAT 242

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SLVDMY KC  ++ ARRVFD M  ++VV W+++I  +A N    EAL++F E   ++  R
Sbjct: 243 SLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENV-R 301

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF--NDVVASALVDMYAKCGSVNYSD 285
           P+ + +  V +AC+ LG L  G  A G++   G EF  N V+ +AL+D YAKCGSV  + 
Sbjct: 302 PDCYAMVGVFSACSRLGALELGNWARGLM--DGDEFLSNPVLGTALIDFYAKCGSVAQAK 359

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF  +     V + ++I G A  G    +  +F +M+  G++P+  TFVG+L  C+H+G
Sbjct: 360 EVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAG 419

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LVD+G ++   M   + + P  +HY C+VD+  R G L EA  L +S+ ++ +   ++WG
Sbjct: 420 LVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEAN--SIVWG 477

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL   RLH    +A     QLIE     +  YV LSN Y+ +  W+    +RS + + G
Sbjct: 478 ALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKG 537

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K PGCSWVE+    + F  G+       ++   L  L + ++E GY    T  V  DV
Sbjct: 538 MQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGY-NPTTEFVLFDV 596

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           E+E +E  +G HSE+LA+AF LIS      IR++KNLR+C DCH+  KL+S +  R+ +V
Sbjct: 597 EEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIV 656

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHHF  GSCSC D+W
Sbjct: 657 RDNNRFHHFTEGSCSCRDYW 676



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 217/433 (50%), Gaps = 12/433 (2%)

Query: 36  QLQEC-----KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           +L++C     K L      H  +L+ G   +T+ +N L+   +    TQ A  +F +   
Sbjct: 4   ELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPH 63

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI-TGKQ 149
           PN+  Y +L+ G ++    + A+ ++  M  +   P+ FTF  V+KAC+ L      G  
Sbjct: 64  PNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLS 123

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H+ +   GF +++ V + LV +Y K   +  AR+VFD +  +NVVSWT+II  + ++  
Sbjct: 124 LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL +FR    +   RP+   L  ++ AC+ +G L SG+   G +  SG   N  VA+
Sbjct: 184 FGEALGLFRGL-LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVAT 242

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +LVDMYAKCGS+  + +VF+ +    VV ++++I G A  G+ + +LD+F EM    ++P
Sbjct: 243 SLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRP 302

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +    VGV  ACS  G ++ G      +      + +    T ++D   + G + +A ++
Sbjct: 303 DCYAMVGVFSACSRLGALELG-NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEV 361

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYALA 448
            K ++       +++  ++S   + G V  A     Q+++   Q   N +V L      A
Sbjct: 362 FKGMRRKD---CVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHA 418

Query: 449 GEWENVHSLRSEM 461
           G  ++ H   S M
Sbjct: 419 GLVDDGHRYFSGM 431


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/633 (34%), Positives = 347/633 (54%), Gaps = 56/633 (8%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN--CYVRLKKTQVA 81
           +SS  T+   +   + CK +  L  +HS  +K+G + N    N +++  C         A
Sbjct: 8   QSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYA 67

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           RQLFD + EP+V S+  +  GY  +  P++ + L+ +ML   V P+ +T+  + K  +  
Sbjct: 68  RQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRS 127

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR--------- 192
             L  G+++H H+  +G   N+   ++L++MY  C  +D AR +FD M C+         
Sbjct: 128 VALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFD-MSCKSDVVTWNAM 186

Query: 193 ---------NVVSWTSIIVAHAQNAQ------------------------GH-------E 212
                    +V+SWT+I+       Q                        G+       E
Sbjct: 187 ISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKE 246

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +FRE    S+ +P++  + SV+ ACA LG L  G+     + ++  + +  V +AL+
Sbjct: 247 ALMLFREMQ-TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALI 305

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMY KCG+V  +  +FN +      T+T+M+VG A  G G  +L++F++M+   + P++V
Sbjct: 306 DMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEV 365

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           T+VGVL AC+H+G+VDEG +   SM  ++GI P+  HY C+VD+LG+ G L EA+++ K+
Sbjct: 366 TYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKN 425

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + P+   ++WG LL A R+H   ++A  A  Q++E        YV   N YA   +W+
Sbjct: 426 MPMKPNS--IVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWD 483

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            +  LR  M   GI K PGCS +E+    + F AG+    +  E+   L ++   +K  G
Sbjct: 484 KLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAG 543

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y    T  VF+D+ +E +E  V  HSE+LA+AFGLI+   G+TIRI+KNLRMC DCH V 
Sbjct: 544 Y-SPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVA 602

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KL+S + +R+ +VRD  RFHHFR+GSCSC D+W
Sbjct: 603 KLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 337/574 (58%), Gaps = 9/574 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVS- 95
           LQ C  L  LA +H+ I+K GF +N   L    +    L     A  L   + +  V   
Sbjct: 14  LQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDA 73

Query: 96  --YTSLMAGYINMGQPQ-IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
             +++++  Y    Q +  A+  +  MLG  + PN++ F  V+KAC+ L DL  GK +H 
Sbjct: 74  FLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHG 133

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCND-VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            +  FGF  ++ V +++V MY  C+  ++ AR++FD M   + V+WT++I  +A+  Q  
Sbjct: 134 SLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSA 193

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
            A+ +FR+        P+   + SV++AC  LG L  GK     + +        +++AL
Sbjct: 194 GAVGLFRKMQIAGV-CPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNAL 252

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           VDM+AKCG V+ +  +F  +S  ++V++TS+IVG A +G G  ++ LF EM + G+ P D
Sbjct: 253 VDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPED 312

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           + F+G+L ACSHSGLV+ G Q+   M R++GI+P  +HY C+VD+L R G + EA +  +
Sbjct: 313 IAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVE 372

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + ++P+  P++W TL+SA R+HG + +    S QLI +     + YV LSN Y    +W
Sbjct: 373 RMPIEPN--PIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDW 430

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           E    +R  M + GI K PG + +E+ ++ + F  G+    + +E++ ++ E+ R+MK  
Sbjct: 431 EKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRA 490

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY    T  VF+D+++E +E+ +  HSE+LA+AF L++ P G  IRI KNLR+C DCH  
Sbjct: 491 GYAPTTTE-VFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSA 549

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            K IS I  R+ V+RD +RFHHFR+G CSCGDFW
Sbjct: 550 SKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/553 (38%), Positives = 318/553 (57%), Gaps = 43/553 (7%)

Query: 53  ILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           + +   + + FT   +++ YV+      AR++FD M E N VS+ +++AGY+   +   A
Sbjct: 176 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 235

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
             LF+ M                  C                       N+   ++++  
Sbjct: 236 RELFEAM-----------------PCQ----------------------NVSSWNTMITG 256

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y +  D+  AR  FD M  R+ +SW +II  +AQ+  G EAL +F E   +  +R N+  
Sbjct: 257 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMK-RDGERLNRST 315

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
             S ++ CA +  L  GK  HG VV++G E    V +AL+ MY KCG+++ +  VF  I 
Sbjct: 316 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 375

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
              VV++ +MI G A++G G+ +L LF  M   GI P+DVT VGVL ACSH+GLVD+G +
Sbjct: 376 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 435

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           +  SM + YGI  ++KHYTC++D+LGR GRLD+A  L K++  +PD     WG LL ASR
Sbjct: 436 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA--TWGALLGASR 493

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG  ++  +A+  + E     +  YV LSN YA +G W +V  +R  M+  G+ K PG 
Sbjct: 494 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGY 553

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           SWVE++++ + F  G+++      + + L EL+ KMK+ GYV   T LV  DVE+E +  
Sbjct: 554 SWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYV-SSTKLVLHDVEEEEKVH 612

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           ++  HSE+LA+AFG+++IP G  IR++KNLR+C DCH+  K IS IV R  ++RD +RFH
Sbjct: 613 MLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFH 672

Query: 593 HFRNGSCSCGDFW 605
           HF  G CSCGD+W
Sbjct: 673 HFNGGQCSCGDYW 685



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 135/276 (48%), Gaps = 6/276 (2%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           E+ ++    N  + N +I  Y +      AR  FD M + + +S+ +++AGY   G  + 
Sbjct: 237 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           AL LF +M  +    N  TF + +  C+ +A L  GKQ+H  +   G +    V ++L+ 
Sbjct: 297 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLV 356

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC ++D A  VF+ +  + VVSW ++I  +A++  G EAL +F     ++   P+  
Sbjct: 357 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK-KTGILPDDV 415

Query: 232 MLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
            +  V++AC+  G +  G +  + +    G   N    + ++D+  + G ++ +  +   
Sbjct: 416 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 475

Query: 291 IS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEM 322
           +   P   T+ +++  +  +G   LG  +  +  EM
Sbjct: 476 MPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 511



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 161/381 (42%), Gaps = 46/381 (12%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F   H +   VR +  + AR LFD+M E +VVS+ ++++GY   G  + A  +F      
Sbjct: 31  FLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF------ 84

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVD 180
               +E      I    MLA  +   +I      F  +  + L+  + ++  Y K N + 
Sbjct: 85  ----DEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLV 140

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR +FD M  R+ VSW ++I  +AQN +  EA  +F E   +        +   V N  
Sbjct: 141 DARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGM 200

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVA--------------------------SALVDM 274
               R    +V  G+  ++   +N ++A                          + ++  
Sbjct: 201 LDEAR----RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 256

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YA+ G +  +   F+R+     +++ ++I G A+ G G  +L LF EM   G + N  TF
Sbjct: 257 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 316

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
              L  C+    ++ G Q +     K G+         ++ M  + G +D+AY + + I+
Sbjct: 317 TSTLSTCAEIAALELGKQ-VHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 375

Query: 395 VDPDGGPLLWGTLLSASRLHG 415
              +   + W T+++    HG
Sbjct: 376 ---EKEVVSWNTMIAGYARHG 393



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 13/225 (5%)

Query: 29  TKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C  + +L     VH  ++K+G  S  +  N L+  Y +      A  +F
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           + + E  VVS+ +++AGY   G  + AL+LF+ M    + P++ T   V+ ACS    + 
Sbjct: 372 EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 431

Query: 146 TGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            G +  ++  + +G   N    + ++D+ G+   +D A+ +   M    +  +W +++ A
Sbjct: 432 KGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGA 491

Query: 204 ---HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
              H     G +A +M  E      +  N  M   + N  A+ GR
Sbjct: 492 SRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLSNLYAASGR 531



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 126/306 (41%), Gaps = 55/306 (17%)

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           + ++V  ++++  Y +   V  A+ +FD M C+N +SW  ++ A+ QN +  +A  +F  
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF-- 115

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
                                                  S  ++  +  + ++  Y K  
Sbjct: 116 --------------------------------------ESKADWELISWNCMMGGYVKRN 137

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            +  +  +F+R+     V++ +MI G A+ G    +  LF E   R +     T+  ++ 
Sbjct: 138 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVS 193

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
               +G++DE  +  D M  K  +      +  ++    +  R+D+A +L +++   P  
Sbjct: 194 GYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAM---PCQ 245

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
               W T+++    +G  DIA +A N      Q+ + ++  +   YA +G  E    L  
Sbjct: 246 NVSSWNTMITGYAQNG--DIA-QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFV 302

Query: 460 EMKRTG 465
           EMKR G
Sbjct: 303 EMKRDG 308


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/561 (39%), Positives = 327/561 (58%), Gaps = 10/561 (1%)

Query: 49  VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +HS  ++ G+L  + F     ++ Y +  + ++AR LF EM   NVV++ ++M   +  G
Sbjct: 33  IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 92

Query: 108 QP--QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           +P   I      +  G L  PN  +      AC+    L  G+Q H  +   GF+ ++ V
Sbjct: 93  RPLETIEAYFGLREAGGL--PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 150

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S+VD YGKC     AR VFD MG RN VSW S++ A+AQN    EA   +     +S 
Sbjct: 151 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR-RSG 209

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           + P   M++S +  CA L  L  G+  H V VRS  + N  VASALVDMY KCG V  ++
Sbjct: 210 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 269

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHS 344
           ++F      ++VT+ +MI G A  G  + +L +F++MI  G   PN +T V V+ +CS  
Sbjct: 270 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 329

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GL  +G +  ++M  ++GI P  +HY CVVD+LGR G  ++AY++ + + + P     +W
Sbjct: 330 GLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSIS--VW 387

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G LL A ++HG+ ++   A+ +L E + Q +  +V LSN +A AG W     +R EMK  
Sbjct: 388 GALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNV 447

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           GI K+PGCSWV  ++  + F A +   E  +E+ +LL +L ++M+  GY+   T     D
Sbjct: 448 GIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMP-DTQYSLYD 506

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           +E+E +E  V  HSE+LALAFGLI IP G+ IRIMKNLR+C DCH  FK IS IV R+ +
Sbjct: 507 LEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREII 566

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD NRFHHF+   CSCGD+W
Sbjct: 567 VRDNNRFHHFKQYQCSCGDYW 587



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 146/322 (45%), Gaps = 12/322 (3%)

Query: 126 PNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQY--NLVVCSSLVDMYGKCNDVDGA 182
           PN+FTF +  KA +      T G QIH+    FG+      V C++L DMY K   +  A
Sbjct: 8   PNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAAL-DMYFKTGRLKLA 66

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           R +F  M  RNVV+W +++     + +  E +E +     ++   PN     +  NACA 
Sbjct: 67  RHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLR-EAGGLPNVVSACAFFNACAG 125

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              L  G+  HG VV+ G E +  V +++VD Y KC     +  VF+ +   + V++ SM
Sbjct: 126 AMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSM 185

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHLDSMYRKY 361
           +   A+ G    +   +      G +P D      L  C  +GL+   + + L ++  + 
Sbjct: 186 VAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC--AGLLGLHLGRALHAVAVRS 243

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            I  +    + +VDM G+ G +++A ++       P    + W  ++      G    A+
Sbjct: 244 CIDANIFVASALVDMYGKCGCVEDAEQI---FYETPQRNLVTWNAMIGGYAHIGDAQNAL 300

Query: 422 EASNQLIESNQQVANAYVTLSN 443
              + +I S +   N Y+TL N
Sbjct: 301 LVFDDMIRSGETAPN-YITLVN 321



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ L    ++H+  ++S   +N F  + L++ Y +    + A Q+F E  + N+
Sbjct: 221 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 280

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQI-H 151
           V++ +++ GY ++G  Q ALL+F  M+      PN  T   VI +CS       G ++  
Sbjct: 281 VTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFE 340

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQN 207
           T  E FG +      + +VD+ G+    + A  V   M  R  +S W +++ A   H + 
Sbjct: 341 TMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKT 400

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             G  A E   E + Q       H+L S  N  AS GR
Sbjct: 401 ELGRIAAEKLFELDPQDS---GNHVLLS--NMFASAGR 433


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 350/628 (55%), Gaps = 42/628 (6%)

Query: 9   LIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHL 68
           +I +L+   ++  + R S H   +F    +       L  +H+ +LK+    ++  L+ +
Sbjct: 1   MICSLSLLHVSPLHHRPSTHLLHNFTSPFE-------LKQLHAHLLKTNSPLSSLPLSRV 53

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
            +          A+ +F  +    V  + + +  +     P  A+ LF ++    + P+ 
Sbjct: 54  ASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDH 113

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           +T + V+KACS L D+  GK +H ++E  G Q N+ + + +V +Y  C ++  AR+VFD 
Sbjct: 114 YTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDK 173

Query: 189 MGCRNVV-------------------------------SWTSIIVAHAQNAQGHEALEMF 217
           M  R+V+                               SWTS+I  +AQ  +  EA+++F
Sbjct: 174 MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF 233

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
            E    +   PN+  + +V+ ACA +G LV G+  H    RSG E N  V + L+DMY K
Sbjct: 234 LEME-DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVK 292

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG +  + ++F+ +   +VV++++MI G A +G    +L LFN+MI+ G+KPN VTF+G+
Sbjct: 293 CGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           LHACSH G+V++G ++  SM R YGI+P  +HY C+VD+  R G L EA++   ++ + P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           +G  ++WG LL   ++H  + +A EA+  L + +      YV LSN YA AG WE+V  +
Sbjct: 413 NG--VVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARV 470

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R  M+  G+ K PG S + +    Y F AG+    +  E+     +L ++MK +GYV   
Sbjct: 471 RKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYV-PN 529

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           T +V +D+E++ +E+ +  HSE+LA+ FGLI    G  IRIMKNLR+C DCH   K+IS 
Sbjct: 530 TSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISV 589

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  R+ VVRD NRFH F+NGSCSCGD+W
Sbjct: 590 VSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 340/577 (58%), Gaps = 8/577 (1%)

Query: 33   FIQQLQECKH---LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            F   L  C +   LI    VH+ I+ +GF       N L+  Y +L     A+++   M 
Sbjct: 1152 FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP 1211

Query: 90   EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GK 148
            +P+ V++ +L+ G+    +P  A+  ++ +    +  N  T  +V+ ACS   DL+  G 
Sbjct: 1212 QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGM 1271

Query: 149  QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
             IH HI   GF+ +  V +SL+ MY KC D++ +  +FD +G ++ ++W +++ A+A + 
Sbjct: 1272 PIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHG 1331

Query: 209  QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
             G EAL++F E      +  +Q   +  + A A+L  L  G+  HG+V++ G E +  V 
Sbjct: 1332 CGEEALKIFGEMRNVGVNL-DQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 1390

Query: 269  SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
            +A +DMY KCG ++   K+  +  N S +++  +I   A++G  + + + F+EM+  G K
Sbjct: 1391 NAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 1450

Query: 329  PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            P+ VTFV +L AC+H GLVDEG+ + DSM R++G+ P  +H  C++D+LGR+GRL  A  
Sbjct: 1451 PDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEG 1510

Query: 389  LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
              K + V P+   L W +LL+A R+HG +++A + +  L+E +    +AYV  SN  A +
Sbjct: 1511 FIKEMPVPPN--DLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATS 1568

Query: 449  GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
            G+WE+V +LR EM    I K+P CSWV+++D+ ++F  G     + S + + L EL +  
Sbjct: 1569 GKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMT 1628

Query: 509  KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
            KE GYV   T     D+++E +E  +  HSERLALAFGLI+ P+  T+RI KNLR+C DC
Sbjct: 1629 KEAGYV-PDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDC 1687

Query: 569  HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            H V+K +S IV R  V+RD  RFHHF  G CSCGD+W
Sbjct: 1688 HSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 247/462 (53%), Gaps = 10/462 (2%)

Query: 27  CHTKAH---FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           C  KA+   +   L+ C  L  L     V   I K  F+ N F  + L++ + +  K + 
Sbjct: 125 CGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMED 184

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  LF  M+E +VVS+ +++ GY   G    +  +F+ ML   + P+ +T  +V++A + 
Sbjct: 185 ASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAE 244

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
              LI   QIH  I   G+    +V   L++ Y K   +  A+ +   M  +++ S T++
Sbjct: 245 GGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTAL 304

Query: 201 IVAHAQNA-QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           I  +A       +AL++F+E N Q     +  +L S++N CA+L     G   H   ++ 
Sbjct: 305 ITGYAHEGIYSVDALDLFKEMN-QMNIGMDDVILCSMLNICANLASFALGTQIHAFALKY 363

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
              ++  + +AL+DMYAK G +  + + F+ +   +V+++TS+I G AK+G G  ++ L+
Sbjct: 364 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLY 423

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
            +M S+G KPNDVTF+ +L ACSH+GL  EG +  ++M  KY I P A+HY+C+VD+  R
Sbjct: 424 KKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFAR 483

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
            G L+EAY L   I +  +    LWG +L AS ++G + +  EA++ L     + +  YV
Sbjct: 484 QGLLEEAYNLLCKIDIKHNAS--LWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYV 541

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            L++ Y+ AG W++   +R  M+     K  G S+ +   ++
Sbjct: 542 VLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKKS 583



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 190/374 (50%), Gaps = 6/374 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +GF S+      LI  YV++     AR +FD M E +VVS+T++++GY   G+
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A +LF  M    V  N+FT+ + ++AC+ L  L  G Q+   I+   F  NL V S+
Sbjct: 112 FEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA 171

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD + KC  ++ A  +F  M  R+VVSW ++I  +A      ++  MFR    +    P
Sbjct: 172 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM-LRGGLVP 230

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + L SV+ A A  G L+     HG++ + G    D+V   L++ YAK GS+  +  + 
Sbjct: 231 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 290

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRF-SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
             +    + + T++I G A  G+    +LDLF EM    I  +DV    +L+ C++    
Sbjct: 291 KGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASF 350

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
             G Q + +   KY    D      ++DM  ++G +++A +    ++   +   + W +L
Sbjct: 351 ALGTQ-IHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME---EKNVISWTSL 406

Query: 408 LSASRLHGRVDIAV 421
           +S    HG   +AV
Sbjct: 407 ISGYAKHGYGHMAV 420



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            VH  ++K+G L + +    L++ Y  +     A++LF+EM + NVVS+TSLM GY + G 
Sbjct: 868  VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 927

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            P   L ++Q+M    V  N+ TFATV  +C +L D + G Q+  HI  +GF+ ++ V +S
Sbjct: 928  PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANS 987

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            L+ M+   + V+ A  VFD M   +++SW ++I A+A +    E+L  F    +   +  
Sbjct: 988  LISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL-HNET 1046

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            N   L+S+++ C+S+  L  G+  HG+VV+ G + N  + + L+ +Y++ G    ++ VF
Sbjct: 1047 NSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVF 1106

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG-LV 347
              ++   ++++ SM+    + G     L +  E++  G   N VTF   L ACS+   L+
Sbjct: 1107 QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLI 1166

Query: 348  DEGIQH---LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            +  I H   + + +  + I+ +A     +V M G+ G + EA K+   +Q  P    + W
Sbjct: 1167 ESKIVHALIIVAGFHDFLIVGNA-----LVTMYGKLGMMMEAKKV---LQTMPQPDRVTW 1218

Query: 405  GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
              L+     +   + AV+A  +LI      AN Y+T+
Sbjct: 1219 NALIGGHAENEEPNEAVKAY-KLIREKGIPAN-YITM 1253



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 63   FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
            F  N LIN Y +    + AR +FDEM   N  S++++++GY+ +G  + A+ LF +M G 
Sbjct: 780  FQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL 839

Query: 123  LVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             V PN F  A++I ACS    +AD   G Q+H  +   G   ++ V ++LV  YG    V
Sbjct: 840  GVEPNGFMVASLITACSRSGYMAD--EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 897

Query: 180  DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
              A+++F+ M   NVVSWTS++V ++ +    E L +++    Q     NQ+  A+V ++
Sbjct: 898  YNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR-QEGVSGNQNTFATVTSS 956

Query: 240  CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            C  L   V G    G +++ G E +  VA++L+ M++   SV  +  VF+ ++   ++++
Sbjct: 957  CGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 1016

Query: 300  TSMIVGAAKYGLGRFSLDLFNEM 322
             +MI   A +GL R SL  F+ M
Sbjct: 1017 NAMISAYAHHGLCRESLRCFHWM 1039



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 180/372 (48%), Gaps = 14/372 (3%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            V   I++ GF  +    N LI+ +      + A  +FD M E +++S+ ++++ Y + G 
Sbjct: 969  VLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL 1028

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             + +L  F  M       N  T ++++  CS + +L  G+ IH  +   G   N+ +C++
Sbjct: 1029 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNT 1088

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            L+ +Y +    + A  VF  M  R+++SW S++  + Q+ +  + L++  E   Q     
Sbjct: 1089 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAEL-LQMGKVM 1147

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDK 286
            N    AS + AC++   L+  K+ H +++ +G  F+D  +V +ALV MY K G +  + K
Sbjct: 1148 NHVTFASALAACSNPECLIESKIVHALIIVAG--FHDFLIVGNALVTMYGKLGMMMEAKK 1205

Query: 287  VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            V   +  P  VT+ ++I G A+      ++  +  +  +GI  N +T V VL ACS    
Sbjct: 1206 VLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAP-- 1263

Query: 347  VDEGIQHLDSMYRKY---GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
             D+ ++H   ++      G   D      ++ M  + G L+ +  +   +    +  P+ 
Sbjct: 1264 -DDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG---NKSPIT 1319

Query: 404  WGTLLSASRLHG 415
            W  +++A+  HG
Sbjct: 1320 WNAMVAANAHHG 1331



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 171/352 (48%), Gaps = 37/352 (10%)

Query: 17  SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
           S+ R      C+T    ++   E   LI    +H  I + G+ S       LIN Y +  
Sbjct: 222 SMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNG 281

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI-ALLLFQKMLGNLVWPNEFTFATVI 135
             + A+ L   ML+ ++ S T+L+ GY + G   + AL LF++M    +  ++    +++
Sbjct: 282 SLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSML 341

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
             C+ LA    G QIH     +   Y++ + ++L+DMY K  +++ A+R FD M  +NV+
Sbjct: 342 NICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVI 401

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWTS+I  +A++  GH A+ ++++   +   +PN     S++ AC+  G           
Sbjct: 402 SWTSLISGYAKHGYGHMAVSLYKKMESKGF-KPNDVTFLSLLFACSHTG----------- 449

Query: 256 VVRSGCE-FNDVVA-----------SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           +   GCE FN++V            S +VD++A+ G +  +  +  +I      +    I
Sbjct: 450 LTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAI 509

Query: 304 VGAAK-YG---LGRFSL-DLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDE 349
           +GA+  YG   LG+ +  +LFN      ++P N V +V +    S +GL D+
Sbjct: 510 LGASSIYGYMSLGKEAASNLFN------MQPENSVNYVVLASIYSAAGLWDD 555



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G  IHTH+ T GF  +L + + L+  Y K  DV  AR VFD M  R+VVSWT+++  ++Q
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N +  +A  +F +  +    + NQ    S + AC SL  L  G    G + +     N  
Sbjct: 109 NGRFEKAFVLFSDMRHCGV-KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLF 167

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V SALVD ++KCG +  +  +F  +    VV++ +MI G A  G    S  +F  M+  G
Sbjct: 168 VKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 227

Query: 327 IKPNDVTFVGVLHACSHSG 345
           + P+  T   VL A +  G
Sbjct: 228 LVPDCYTLGSVLRASAEGG 246



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 135  IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
            +K  S +   + GK +H           +   ++L++MY K  +++ AR VFD M  RN 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 195  VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV-SGKVAH 253
             SW++++  + +     EA+ +F +  +     PN  M+AS+I AC+  G +   G   H
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVASLITACSRSGYMADEGFQVH 869

Query: 254  GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
            G VV++G   +  V +ALV  Y   G V  + K+F  + + +VV++TS++VG +  G   
Sbjct: 870  GFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 929

Query: 314  FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE---GIQHLDSMYRKYGIIPDAKHY 370
              L+++  M   G+  N  TF  V  +C   GL+++   G Q L  +  +YG        
Sbjct: 930  EVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHII-QYGFEDSVSVA 985

Query: 371  TCVVDMLGRTGRLDEA-YKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
              ++ M      ++EA Y      + D     + W  ++SA   HG
Sbjct: 986  NSLISMFSSFSSVEEACYVFDHMNECD----IISWNAMISAYAHHG 1027



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 88/193 (45%), Gaps = 6/193 (3%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           R +  +   ++  C        G + H  ++ +G   +  + + L+  Y K G V  +  
Sbjct: 27  RLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARN 86

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   SVV++T+M+ G ++ G    +  LF++M   G+K N  T+   L AC+    
Sbjct: 87  VFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRC 146

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA-YKLAKSIQVDPDGGPLLWG 405
           +D GIQ +    +K   + +    + +VD   + G++++A Y     ++ D     + W 
Sbjct: 147 LDMGIQ-VQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERD----VVSWN 201

Query: 406 TLLSASRLHGRVD 418
            ++    + G  D
Sbjct: 202 AMIGGYAVQGFAD 214


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/545 (37%), Positives = 323/545 (59%), Gaps = 4/545 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N LI  YV+    + AR+LFDEM   NV ++ +++AG  N G  + +L  F  M 
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+E+   ++ + C+ L D+++G+Q+H ++   G   ++ V SSL  MY +C  + 
Sbjct: 167 REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLR 226

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
                   +   N+VS  + I    QN     ALE F        +  N     S + +C
Sbjct: 227 DGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVE-ANAVTFVSAVTSC 285

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           + L  L  G+  H + +++G +    V ++LV MY++CG +  S++V    S   +V  +
Sbjct: 286 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 345

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +MI     +G G+ ++ LF +M++ G +PN+VTF+ +L+ACSHSGL DEG+   + M + 
Sbjct: 346 AMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKT 405

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           YG+ P  KHYTC+VD+LGR+G L+EA  L  S+ V PDG  ++W TLLSA +   + D+A
Sbjct: 406 YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDG--VIWKTLLSACKTQKKFDMA 463

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
              + ++IE +   + +YV LSN  A +  WE+V  +R  M+   + KEPG SWVE++ Q
Sbjct: 464 ERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQ 523

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F  G+    R  E++  L E+  ++++ GY    + +VF D+EDE +E  +  HSE+
Sbjct: 524 IHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMS-MVFHDMEDEEKEVSLAHHSEK 582

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AF  +S+P+G+ IR+MKNLR+C DCH   KL+S ++ R+ VVRDV+RFHHF++G CS
Sbjct: 583 LAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCS 642

Query: 601 CGDFW 605
           CGD+W
Sbjct: 643 CGDYW 647



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 154/354 (43%), Gaps = 40/354 (11%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +W     F+ + +AC  L  L   +Q+H    T G   +    + L+  Y    D   AR
Sbjct: 41  LWSEPGLFSHIFRACQALPLL---RQLHAFAATSGAAADRFTANHLLLAYADLGDFPTAR 97

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE------------------------ 219
            +F+ +  RNV+SW  +I  + +N     A ++F E                        
Sbjct: 98  GLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEE 157

Query: 220 ---FNYQSRD---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
              F +  R    +P+++ L S+   CA L  +VSG+  H  VVRSG + +  V S+L  
Sbjct: 158 SLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAH 217

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY +CG +   +     + + ++V+  + I G  + G    +L+ F  M   G++ N VT
Sbjct: 218 MYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVT 277

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FV  + +CS    + +G Q + ++  K G+       T +V M  R G L ++ ++    
Sbjct: 278 FVSAVTSCSDLAALAQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVC--- 333

Query: 394 QVDPDGGPL-LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
            ++  G  L L   ++SA   HG    AV    Q++ +  +  N    L+  YA
Sbjct: 334 -LEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE-PNEVTFLTLLYA 385


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 342/592 (57%), Gaps = 42/592 (7%)

Query: 49  VHSEILKSGFLSNT--FTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +H+ IL+   L +     LN  L   Y    K + +  LF + ++P++  +T+ +     
Sbjct: 46  IHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASI 105

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    A LL+ ++L + + PNEFTF++++K+CS      +GK IHTH+  FG   +  V
Sbjct: 106 NGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTK----SGKLIHTHVLKFGLGLDPYV 161

Query: 166 CSSLVDMYGKCNDV-------------------------------DGARRVFDLMGCRNV 194
            + LVD+Y K  DV                               + AR +FD M  R++
Sbjct: 162 ATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDI 221

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSW  +I  ++Q+    +AL +F++     + +P++  + + ++AC+ +G L +G+  H 
Sbjct: 222 VSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHV 281

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            V  S    N  V +AL+DMY+KCGS+  +  VFN      +V + +MI G A +G  + 
Sbjct: 282 FVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQD 341

Query: 315 SLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
           +L LF+EM    G++P D+TF+G L AC+H+GLV+EGIQ  +SM ++YGI P  +HY C+
Sbjct: 342 ALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCL 401

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           V +LGR G+L  AY++ K++ ++ D   +LW ++L + +LHG   +  E +  LI  N  
Sbjct: 402 VSLLGRAGQLKRAYEIIKNMNMEADS--VLWSSVLGSCKLHGEFMLGKEIAEYLIGQNIS 459

Query: 434 VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFER 493
            +  YV LSN YAL G++E V  +R+ MK  GI KEPG S +EI ++ + F AG+    +
Sbjct: 460 NSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLK 519

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
             E+ ++LR++  ++K  GYV   T  V  D+E+  +E  + +HSERLA+A+GLIS   G
Sbjct: 520 SKEIYTMLRKMSERIKSHGYVP-NTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPG 578

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             ++I KNLR+C DCH V KLIS I  R  V+RD NRFHHF +GSCSC DFW
Sbjct: 579 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 348/606 (57%), Gaps = 11/606 (1%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCHTKAHFIQQ--LQECKHLISLA---SVHSEILKSGFLS 60
           TRN +F  A S  +     +  H   +F     ++ C  L+ L     +H    K   +S
Sbjct: 183 TRNELFEDAMSIFSELISVTE-HKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVS 241

Query: 61  NTFTLNHLINCYVRLKKTQVA-RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           + F  N LI  Y +    + A +++FD M    V S+ +L+ GY     P+ AL L+ +M
Sbjct: 242 DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM 301

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             + + P+ FT  +++ ACS +  L  G++IH      G   +  +  SL+ +Y  C   
Sbjct: 302 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKP 361

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             A+ +FD M  R++VSW  +I  ++QN    EA+ +FR+       +P +  +  V  A
Sbjct: 362 FAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM-LSDGIQPYEIAIMCVCGA 420

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C+ L  L  GK  H   +++    +  V+S+++DMYAK G +  S ++F+R+    V ++
Sbjct: 421 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
             +I G   +G G+ +L+LF +M+  G+KP+D TF G+L ACSH+GLV++G+++ + M  
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 540

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            + I P  +HYTCVVDMLGR GR+D+A +L + +  DPD    +W +LLS+ R+HG + +
Sbjct: 541 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDS--RIWSSLLSSCRIHGNLGL 598

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
             + +N+L+E   +    YV +SN +A +G+W++V  +R  MK  G+ K+ GCSW+E+  
Sbjct: 599 GEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGG 658

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F  G+ +     EV    R LE K+   GY    TG V  D+E+E +  I+  HSE
Sbjct: 659 KVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYT-PDTGSVLHDLEEEDKIGILRGHSE 717

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA++FGL++  KG+ +R+ KNLR+C DCH+  K IS +V RD VVRD  RFHHFR+G C
Sbjct: 718 KLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGIC 777

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 778 SCGDYW 783



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 194/383 (50%), Gaps = 8/383 (2%)

Query: 49  VHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H  +  S    N F LN  +I  Y        +R +FD++   N+  + ++++ Y    
Sbjct: 127 LHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNE 186

Query: 108 QPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + A+ +F +++      P+ FT   VIKAC+ L DL  G+ IH          ++ V 
Sbjct: 187 LFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVG 246

Query: 167 SSLVDMYGKCNDVDGA-RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           ++L+ MYGKC  V+ A +RVFDLM  + V SW +++  +AQN+   +AL+++ +      
Sbjct: 247 NALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGL 306

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           D P+   + S++ AC+ +  L  G+  HG  +R+G   +  +  +L+ +Y  CG    + 
Sbjct: 307 D-PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQ 365

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ + + S+V++  MI G ++ GL   +++LF +M+S GI+P ++  + V  ACS   
Sbjct: 366 VLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLS 425

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G + L     K  +  D    + ++DM  + G +  + ++   ++   +     W 
Sbjct: 426 ALRLG-KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR---EKDVASWN 481

Query: 406 TLLSASRLHGRVDIAVEASNQLI 428
            +++   +HGR   A+E   +++
Sbjct: 482 VIIAGYGIHGRGKEALELFEKML 504



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
               +++AC    D+  G+++H  +  +  F  + V+ + ++ MY  C     +R VFD 
Sbjct: 107 AMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDK 166

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           +  +N+  W +I+ A+ +N    +A+ +F E    +  +P+   L  VI ACA L  L  
Sbjct: 167 LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 226

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS-DKVFNRISNPSVVTYTSMIVGAA 307
           G++ HG+  +     +  V +AL+ MY KCG V  +  +VF+ +   +V ++ +++ G A
Sbjct: 227 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           +    R +LDL+ +M   G+ P+  T   +L ACS
Sbjct: 287 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 335/584 (57%), Gaps = 17/584 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C HL  L +   +H+  LK+G L  N+F  + L++ Y   K+    R++FD M +  
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           +  + +++AGY      + ALLLF  M  +  +  N  T A V+ AC         + IH
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G   +  V ++L+DMY +   +D A R+F  M  R++V+W ++I  +  +    
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488

Query: 212 EALEMFREFNYQSRD----------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           +AL +  +     R           +PN   L +++ +CA+L  L  GK  H   +++  
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V SALVDMYAKCG +  S KVF++I   +V+T+  +I+    +G G+ ++DL   
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 608

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M+ +G+KPN+VTF+ V  ACSHSG+VDEG++    M   YG+ P + HY CVVD+LGR G
Sbjct: 609 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 668

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           R+ EAY+L   +  D +     W +LL ASR+H  ++I   A+  LI+    VA+ YV L
Sbjct: 669 RIKEAYQLMNMMPRDFNKAG-AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           +N Y+ AG W+    +R  MK  G+ KEPGCSW+E  D+ + F AG++   +  ++   L
Sbjct: 728 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYL 787

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
             L  +M++ GYV   T  V  +VE++ +E ++  HSE+LA+AFG+++   G  IR+ KN
Sbjct: 788 ETLWERMRKEGYV-PDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 846

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH   K IS IV+R+ ++RDV RFH F+NG+CSCGD+W
Sbjct: 847 LRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 193/386 (50%), Gaps = 17/386 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  L+ G L N+F +N L+  Y +L K   ++ L       ++V++ ++++      Q
Sbjct: 224 VHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCS 167
              AL   ++M+   V P+EFT ++V+ ACS L  L TGK++H + ++      N  V S
Sbjct: 283 LLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 342

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY  C  V   RRVFD M  R +  W ++I  ++QN    EAL +F      +   
Sbjct: 343 ALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL 402

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   +A V+ AC   G     +  HG VV+ G + +  V + L+DMY++ G ++ + ++
Sbjct: 403 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM------ISRG-----IKPNDVTFVG 336
           F ++ +  +VT+ +MI G         +L L ++M      +S+G     +KPN +T + 
Sbjct: 463 FGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMT 522

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L +C+    + +G + + +   K  +  D    + +VDM  + G L  + K+   I   
Sbjct: 523 ILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI--- 578

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
           P    + W  ++ A  +HG    A++
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAID 604



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+ + K G+  ++ T+ N L+N Y +        ++FD + E N VS+ SL++   +  
Sbjct: 119 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 178

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLV 164
           + ++AL  F+ ML   V P+ FT  +V+ ACS   M   L+ GKQ+H +    G + N  
Sbjct: 179 KWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSF 237

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           + ++LV MYGK   +  ++ +    G R++V+W +++ +  QN Q  EALE  RE   + 
Sbjct: 238 IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNY 283
            + P++  ++SV+ AC+ L  L +GK  H   +++G  + N  V SALVDMY  C  V  
Sbjct: 298 VE-PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACS 342
             +VF+ + +  +  + +MI G ++    + +L LF  M  S G+  N  T  GV+ AC 
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            SG      + +     K G+  D      ++DM  R G++D A ++   ++   D   +
Sbjct: 417 RSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME---DRDLV 472

Query: 403 LWGTLLSA 410
            W T+++ 
Sbjct: 473 TWNTMITG 480



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 6/243 (2%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV-VCSSLV 170
           A+L +  M+   + P+ + F  ++KA + L D+  GKQIH H+  FG+  + V V ++LV
Sbjct: 81  AVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLV 140

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           ++Y KC D     +VFD +  RN VSW S+I +     +   ALE FR    ++ + P+ 
Sbjct: 141 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-PSS 199

Query: 231 HMLASVINACASLGR---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             L SV+ AC++L     L+ GK  H   +R G E N  + + LV MY K G +  S  +
Sbjct: 200 FTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVL 258

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
                   +VT+ +++    +      +L+   EM+  G++P++ T   VL ACSH  ++
Sbjct: 259 LGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEML 318

Query: 348 DEG 350
             G
Sbjct: 319 RTG 321



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 13/190 (6%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
           +P+ +   +++ A A L  +  GK  H  V + G   + V VA+ LV++Y KCG      
Sbjct: 94  KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 153

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+RIS  + V++ S+I     +     +L+ F  M+   ++P+  T V V+ ACS+  
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKH---YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           +  EG+  +      YG+     +      +V M G+ G+L  +  L  S      GG  
Sbjct: 214 M-PEGLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSF-----GGRD 266

Query: 403 L--WGTLLSA 410
           L  W T+LS+
Sbjct: 267 LVTWNTVLSS 276


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 338/558 (60%), Gaps = 4/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH  +LK+ +  + +    L++ Y +        ++F+EM + +V+ ++ +++ Y    
Sbjct: 163 SVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSN 222

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           Q + A+ LF +M    V PN+FTFA+V+++C+ + +L  GKQ+H H+   G   N+ V +
Sbjct: 223 QSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSN 282

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+D+Y KC  +D + ++F  +  RN V+W ++IV + Q+  G +AL +++    + + +
Sbjct: 283 ALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM-LECQVQ 341

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            ++   +SV+ ACASL  +  G   H + +++  + + VV +AL+DMYAKCGS+  +  V
Sbjct: 342 ASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLV 401

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +S    +++ +MI G + +GL   +L  F  M      PN +TFV +L ACS++GL+
Sbjct: 402 FDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLL 461

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           D G  +  SM + YGI P  +HYTC+V +LGR+G LD+A KL + I ++P+    +W  L
Sbjct: 462 DIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVK--VWRAL 519

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A  +H  VD+ + ++ Q+++ + Q    +V LSN YA    W +V S+R  MK  G+ 
Sbjct: 520 LGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVK 579

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SW+E +   + F  G+        +  +L  L  K ++ GYV      V  DVED
Sbjct: 580 KEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNA-VLRDVED 638

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + ++  + +HSERLALAFGLI  P    IRI+KNLR+C DCH   KLIS IV+RD ++RD
Sbjct: 639 DEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRD 698

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFHHF++G CSCGD+W
Sbjct: 699 MNRFHHFQDGICSCGDYW 716



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 218/408 (53%), Gaps = 16/408 (3%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           EC  L    S+H+ I K G  SN F    LI+ Y        ARQ FD +   ++VS+T 
Sbjct: 55  ECAELAY--SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTG 112

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++A Y    + Q +L LF +M      PN FTFA V+KAC  L     GK +H  +    
Sbjct: 113 MVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTC 172

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           ++ +L V   L+D+Y K  D +   RVF+ M   +V+ W+ +I  +AQ+ Q  EA+E+F 
Sbjct: 173 YEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFG 232

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +   ++   PNQ   ASV+ +CAS+  L  GK  H  V++ G + N  V++AL+D+YAKC
Sbjct: 233 QMR-RAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKC 291

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G ++ S K+F  + N + VT+ +MIVG  + G G  +L L+  M+   ++ ++VT+  VL
Sbjct: 292 GRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVL 351

Query: 339 HACSHSGLVDEGIQ----HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            AC+    ++ G Q     L ++Y K  ++ +A     ++DM  + G +  A +L   + 
Sbjct: 352 RACASLAAMELGTQIHSLSLKTIYDKDVVVGNA-----LIDMYAKCGSIKNA-RLVFDML 405

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
            + D   + W  ++S   +HG V  A++A  Q+++  + V N    +S
Sbjct: 406 SERD--EISWNAMISGYSMHGLVGEALKAF-QMMQETECVPNKLTFVS 450



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 170/357 (47%), Gaps = 7/357 (1%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M + N VS+ +L+ GY+   Q    + LF ++       N F F T++K    +      
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
             +H  I   G + N  V ++L+D Y  C  V+ AR+ FD + C+++VSWT ++  +A+N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  ++L++F E      + PN    A V+ AC  L     GK  HG V+++  E +  V
Sbjct: 121 DRFQDSLQLFAEMRMVGFN-PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
              L+D+Y K G  N   +VF  +    V+ ++ MI   A+    R +++LF +M    +
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            PN  TF  VL +C+    +  G Q +     K G+  +      ++D+  + GRLD + 
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQ-VHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           KL   +   P+   + W T++      G  D A+     ++E   QV  + VT S+ 
Sbjct: 299 KLFMEL---PNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLEC--QVQASEVTYSSV 350



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   LQ C  + +L     VH  +LK G   N F  N L++ Y +  +   + +LF E+ 
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             N V++ +++ GY+  G    AL L++ ML   V  +E T+++V++AC+ LA +  G Q
Sbjct: 306 NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH+      +  ++VV ++L+DMY KC  +  AR VFD++  R+ +SW ++I  ++ +  
Sbjct: 366 IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
             EAL+ F+    ++   PN+    S+++AC++ G L  G+
Sbjct: 426 VGEALKAFQMMQ-ETECVPNKLTFVSILSACSNAGLLDIGQ 465


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 330/557 (59%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +   I+++G+ S+      L++ Y +    + A ++F+++ + NVV++ +++  Y+   Q
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  FQ +L   + PN  TF +++  C     L  GK +H  I   G + +L V ++
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNA 554

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV M+  C D+  A+ +F+ M  R++VSW +II    Q+ +   A + F+    +S  +P
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ-ESGIKP 613

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++     ++NACAS   L  G+  H ++  +  + + +V + L+ MY KCGS+  + +VF
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +++   +V ++TSMI G A++G G+ +L+LF +M   G+KP+ +TFVG L AC+H+GL++
Sbjct: 674 HKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ H  SM +++ I P  +HY C+VD+ GR G L+EA +    +QV+PD    +WG LL
Sbjct: 734 EGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDS--RVWGALL 790

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A ++H  V++A +A+ + +E +      +V LSN YA AG W+ V  +R  M   G+ K
Sbjct: 791 GACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVK 850

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PG SW+E+  + + FY+ +    +  E+ + L  L  +M++ GYV   T  V  DVED 
Sbjct: 851 KPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYV-PDTRYVLHDVEDN 909

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E+ +  HSERLA+ +GL+  P    I I KNLR+C DCH   K IS I +R  + RD 
Sbjct: 910 EKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDS 969

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++G CSCGDFW
Sbjct: 970 NRFHHFKDGVCSCGDFW 986



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 215/396 (54%), Gaps = 8/396 (2%)

Query: 37  LQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C   K+L     +++ I KSG   + F  N LIN Y +   T  A+Q+FD+M E +V
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDV 176

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            S+  L+ GY+  G  + A  L ++M+ + V P++ TF +++ AC+   ++  G++++  
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNL 236

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G+  +L V ++L++M+ KC D+  A +VFD +  R++V+WTS+I   A++ +  +A
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
             +F+    +   +P++    S++ AC     L  GK  H  +   G +    V +A++ 
Sbjct: 297 CNLFQRMEEEGV-QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS 355

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCGS+  + +VF+ +   +VV++T+MI G A++G    +   FN+MI  GI+PN VT
Sbjct: 356 MYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVT 415

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ +L ACS    +  G Q  D +    G   D +  T ++ M  + G L +A+++ + I
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
                   + W  +++A   H + D A+     L++
Sbjct: 475 S---KQNVVAWNAMITAYVQHEQYDNALATFQALLK 507



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 210/404 (51%), Gaps = 8/404 (1%)

Query: 30  KAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  L  C   +++     +++ ILK+G+ ++ F    LIN +++      A ++FD
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            +   ++V++TS++ G    G+ + A  LFQ+M    V P++  F ++++AC+    L  
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GK++H  ++  G+   + V ++++ MY KC  ++ A  VFDL+  RNVVSWT++I   AQ
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQ 390

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           + +  EA   F +   +S   PN+    S++ AC+S   L  G+     ++ +G   +D 
Sbjct: 391 HGRIDEAFLFFNKM-IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V +AL+ MYAKCGS+  + +VF +IS  +VV + +MI    ++     +L  F  ++  G
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           IKPN  TF  +L+ C  S  ++ G + +  +  K G+  D      +V M    G L  A
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
             L   +   P    + W T+++    HG+  +A +    + ES
Sbjct: 569 KNLFNDM---PKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 171/304 (56%), Gaps = 11/304 (3%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T++ +++ C    +L  G++I+ HI+  G Q ++ + ++L++MY KC +   A+++FD M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             ++V SW  ++  + Q+    EA ++  +   Q   +P++    S++NACA    +  G
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQM-VQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  + +++++G + +  V +AL++M+ KCG +  + KVF+ +    +VT+TSMI G A++
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G  + + +LF  M   G++P+ V FV +L AC+H   +++G + + +  ++ G   +   
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG-KKVHARMKEVGWDTEIYV 349

Query: 370 YTCVVDMLGRTGRLDEA---YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            T ++ M  + G +++A   + L K   V      + W  +++    HGR+D A    N+
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNV------VSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 427 LIES 430
           +IES
Sbjct: 404 MIES 407


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 335/584 (57%), Gaps = 17/584 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C HL  L +   +H+  LK+G L  N+F  + L++ Y   K+    R++FD M +  
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           +  + +++AGY      + ALLLF  M  +  +  N  T A V+ AC         + IH
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G   +  V ++L+DMY +   +D A R+F  M  R++V+W ++I  +  +    
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488

Query: 212 EALEMFREFNYQSRD----------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           +AL +  +     R           +PN   L +++ +CA+L  L  GK  H   +++  
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V SALVDMYAKCG +  S KVF++I   +V+T+  +I+    +G G+ ++DL   
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 608

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M+ +G+KPN+VTF+ V  ACSHSG+VDEG++    M   YG+ P + HY CVVD+LGR G
Sbjct: 609 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 668

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           R+ EAY+L   +  D +     W +LL ASR+H  ++I   A+  LI+    VA+ YV L
Sbjct: 669 RIKEAYQLMNMMPRDFNKAG-AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           +N Y+ AG W+    +R  MK  G+ KEPGCSW+E  D+ + F AG++   +  ++   L
Sbjct: 728 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYL 787

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
             L  +M++ GYV   T  V  +VE++ +E ++  HSE+LA+AFG+++   G  IR+ KN
Sbjct: 788 ETLWERMRKEGYV-PDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 846

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH   K IS IV+R+ ++RDV RFH F+NG+CSCGD+W
Sbjct: 847 LRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 193/386 (50%), Gaps = 17/386 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  L+ G L N+F +N L+  Y +L K   ++ L       ++V++ ++++      Q
Sbjct: 224 VHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCS 167
              AL   ++M+   V P+EFT ++V+ ACS L  L TGK++H + ++      N  V S
Sbjct: 283 LLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 342

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY  C  V   RRVFD M  R +  W ++I  ++QN    EAL +F      +   
Sbjct: 343 ALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL 402

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   +A V+ AC   G     +  HG VV+ G + +  V + L+DMY++ G ++ + ++
Sbjct: 403 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM------ISRG-----IKPNDVTFVG 336
           F ++ +  +VT+ +MI G         +L L ++M      +S+G     +KPN +T + 
Sbjct: 463 FGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMT 522

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L +C+    + +G + + +   K  +  D    + +VDM  + G L  + K+   I   
Sbjct: 523 ILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI--- 578

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
           P    + W  ++ A  +HG    A++
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAID 604



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+ + K G+  ++ T+ N L+N Y +        ++FD + E N VS+ SL++   +  
Sbjct: 119 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 178

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLV 164
           + ++AL  F+ ML   V P+ FT  +V+ ACS   M   L+ GKQ+H +    G + N  
Sbjct: 179 KWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSF 237

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           + ++LV MYGK   +  ++ +    G R++V+W +++ +  QN Q  EALE  RE   + 
Sbjct: 238 IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNY 283
            + P++  ++SV+ AC+ L  L +GK  H   +++G  + N  V SALVDMY  C  V  
Sbjct: 298 VE-PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACS 342
             +VF+ + +  +  + +MI G ++    + +L LF  M  S G+  N  T  GV+ AC 
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            SG      + +     K G+  D      ++DM  R G++D A ++   ++   D   +
Sbjct: 417 RSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME---DRDLV 472

Query: 403 LWGTLLSA 410
            W T+++ 
Sbjct: 473 TWNTMITG 480



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 6/243 (2%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV-VCSSLV 170
           A+L +  M+   + P+ + F  ++KA + L D+  GKQIH H+  FG+  + V V ++LV
Sbjct: 81  AVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLV 140

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           ++Y KC D     +VFD +  RN VSW S+I +     +   ALE FR    ++ + P+ 
Sbjct: 141 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-PSS 199

Query: 231 HMLASVINACASLGR---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             L SV+ AC++L     L+ GK  H   +R G E N  + + LV MY K G +  S  +
Sbjct: 200 FTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVL 258

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
                   +VT+ +++    +      +L+   EM+  G++P++ T   VL ACSH  ++
Sbjct: 259 LGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEML 318

Query: 348 DEG 350
             G
Sbjct: 319 RTG 321



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 13/190 (6%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
           +P+ +   +++ A A L  +  GK  H  V + G   + V VA+ LV++Y KCG      
Sbjct: 94  KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 153

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+RIS  + V++ S+I     +     +L+ F  M+   ++P+  T V V+ ACS+  
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKH---YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           +  EG+  +      YG+     +      +V M G+ G+L  +  L  S      GG  
Sbjct: 214 M-PEGLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSF-----GGRD 266

Query: 403 L--WGTLLSA 410
           L  W T+LS+
Sbjct: 267 LVTWNTVLSS 276


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/557 (39%), Positives = 328/557 (58%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH +I + GF S+ F  N L+  Y +  + + AR +F+ + + N+VS+TS+++GY   G 
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL +F +M    V P+     +V++A + + DL  GK IH  +   G ++   +  S
Sbjct: 251 PMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS 310

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  MY KC  V  AR  FD M   NV+ W ++I  +A+N   +EA+ +F+E       R 
Sbjct: 311 LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEM-ISKNIRT 369

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   + S I ACA +G L   K     + ++    +  V +AL+DM+AKCGSV+ + +VF
Sbjct: 370 DSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVF 429

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R  +  VV +++MIVG   +G G+ ++DLF  M   G+ PNDVTFVG+L AC+HSGLV+
Sbjct: 430 DRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVE 489

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +   SM + YGI    +HY CVVD+LGR+G L+EAY    ++ ++P  G  +WG LL
Sbjct: 490 EGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEP--GVSVWGALL 546

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A +++  V +   A+ QL   +      YV LSN YA +  W++V  +R  M+  G+ K
Sbjct: 547 GACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSK 606

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           + G S +EI  +  AF  G+    R  E+   L  LER++KE G++      V  D+  E
Sbjct: 607 DLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIES-VLHDLNQE 665

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +EE +  HSERLA+A+GLIS   G T+RI KNLR C +CH   KLIS +V R+ VVRD 
Sbjct: 666 EKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDA 725

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF+NG CSC D+W
Sbjct: 726 NRFHHFKNGVCSCRDYW 742



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 224/456 (49%), Gaps = 23/456 (5%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L    H   L  +H++++ SG + + F +   +N    + +   AR++FDE  EP+
Sbjct: 74  FSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPS 133

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V  + +++ GY +      A+ ++ +M  + V P+ FT   V+KACS +  L  GK++H 
Sbjct: 134 VFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHG 193

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF+ ++ V + LV +Y KC  V+ AR VF+ +  RN+VSWTS+I  + QN    E
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +F +   Q   +P+   L SV+ A   +  L  GK  HG VV+ G EF   +  +L 
Sbjct: 254 ALRIFGQMR-QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLT 312

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            MYAKCG V  +   F+++  P+V+ + +MI G AK G    ++ LF EMIS+ I+ + +
Sbjct: 313 AMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSI 372

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           T    + AC+  G +D   + +     K     D    T ++DM  + G +D A ++   
Sbjct: 373 TVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431

Query: 393 IQVDPDGGPLLWGTLLSASRLHGR----VDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             +D D   ++W  ++    LHGR    +D+        +  N       +T  N   L 
Sbjct: 432 -TLDKD--VVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLV 488

Query: 449 GE-WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYA 483
            E WE  HS    MK  GI         E R Q YA
Sbjct: 489 EEGWELFHS----MKYYGI---------EARHQHYA 511


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 335/584 (57%), Gaps = 17/584 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C HL  L +   +H+  LK+G L  N+F  + L++ Y   K+    R++FD M +  
Sbjct: 222 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 281

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           +  + +++AGY      + ALLLF  M  +  +  N  T A V+ AC         + IH
Sbjct: 282 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 341

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G   +  V ++L+DMY +   +D A R+F  M  R++V+W ++I  +  +    
Sbjct: 342 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 401

Query: 212 EALEMFREFNYQSRD----------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           +AL +  +     R           +PN   L +++ +CA+L  L  GK  H   +++  
Sbjct: 402 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 461

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V SALVDMYAKCG +  S KVF++I   +V+T+  +I+    +G G+ ++DL   
Sbjct: 462 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 521

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M+ +G+KPN+VTF+ V  ACSHSG+VDEG++    M   YG+ P + HY CVVD+LGR G
Sbjct: 522 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 581

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           R+ EAY+L   +  D +     W +LL ASR+H  ++I   A+  LI+    VA+ YV L
Sbjct: 582 RIKEAYQLMNMMPRDFNKAG-AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 640

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           +N Y+ AG W+    +R  MK  G+ KEPGCSW+E  D+ + F AG++   +  ++   L
Sbjct: 641 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYL 700

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
             L  +M++ GYV   T  V  +VE++ +E ++  HSE+LA+AFG+++   G  IR+ KN
Sbjct: 701 ETLWERMRKEGYV-PDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 759

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH   K IS IV+R+ ++RDV RFH F+NG+CSCGD+W
Sbjct: 760 LRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 193/386 (50%), Gaps = 17/386 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  L+ G L N+F +N L+  Y +L K   ++ L       ++V++ ++++      Q
Sbjct: 137 VHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 195

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCS 167
              AL   ++M+   V P+EFT ++V+ ACS L  L TGK++H + ++      N  V S
Sbjct: 196 LLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 255

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY  C  V   RRVFD M  R +  W ++I  ++QN    EAL +F      +   
Sbjct: 256 ALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL 315

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   +A V+ AC   G     +  HG VV+ G + +  V + L+DMY++ G ++ + ++
Sbjct: 316 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 375

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM------ISRG-----IKPNDVTFVG 336
           F ++ +  +VT+ +MI G         +L L ++M      +S+G     +KPN +T + 
Sbjct: 376 FGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMT 435

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L +C+    + +G + + +   K  +  D    + +VDM  + G L  + K+   I   
Sbjct: 436 ILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI--- 491

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
           P    + W  ++ A  +HG    A++
Sbjct: 492 PQKNVITWNVIIMAYGMHGNGQEAID 517



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+ + K G+  ++ T+ N L+N Y +        ++FD + E N VS+ SL++   +  
Sbjct: 32  IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 91

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLV 164
           + ++AL  F+ ML   V P+ FT  +V+ ACS   M   L+ GKQ+H +    G + N  
Sbjct: 92  KWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSF 150

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           + ++LV MYGK   +  ++ +    G R++V+W +++ +  QN Q  EALE  RE   + 
Sbjct: 151 IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 210

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNY 283
            + P++  ++SV+ AC+ L  L +GK  H   +++G  + N  V SALVDMY  C  V  
Sbjct: 211 VE-PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 269

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACS 342
             +VF+ + +  +  + +MI G ++    + +L LF  M  S G+  N  T  GV+ AC 
Sbjct: 270 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 329

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            SG      + +     K G+  D      ++DM  R G++D A ++   ++   D   +
Sbjct: 330 RSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME---DRDLV 385

Query: 403 LWGTLLSA 410
            W T+++ 
Sbjct: 386 TWNTMITG 393



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV-VCSSLVDMYGKCNDVDGARR 184
           P+ + F  ++KA + L D+  GKQIH H+  FG+  + V V ++LV++Y KC D     +
Sbjct: 8   PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 67

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD +  RN VSW S+I +     +   ALE FR    ++ + P+   L SV+ AC++L 
Sbjct: 68  VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-PSSFTLVSVVTACSNLP 126

Query: 245 R---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
               L+ GK  H   +R G E N  + + LV MY K G +  S  +        +VT+ +
Sbjct: 127 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           ++    +      +L+   EM+  G++P++ T   VL ACSH  ++  G
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 13/190 (6%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
           +P+ +   +++ A A L  +  GK  H  V + G   + V VA+ LV++Y KCG      
Sbjct: 7   KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 66

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+RIS  + V++ S+I     +     +L+ F  M+   ++P+  T V V+ ACS+  
Sbjct: 67  KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKH---YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           +  EG+  +      YG+     +      +V M G+ G+L  +  L  S      GG  
Sbjct: 127 M-PEGLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSF-----GGRD 179

Query: 403 L--WGTLLSA 410
           L  W T+LS+
Sbjct: 180 LVTWNTVLSS 189


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 330/557 (59%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +   I+++G+ S+      L++ Y +    + A ++F+++ + NVV++ +++  Y+   Q
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  FQ +L   + PN  TF +++  C     L  GK +H  I   G + +L V ++
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNA 554

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV M+  C D+  A+ +F+ M  R++VSW +II    Q+ +   A + F+    +S  +P
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ-ESGIKP 613

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++     ++NACAS   L  G+  H ++  +  + + +V + L+ MY KCGS+  + +VF
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +++   +V ++TSMI G A++G G+ +L+LF +M   G+KP+ +TFVG L AC+H+GL++
Sbjct: 674 HKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ H  SM +++ I P  +HY C+VD+ GR G L+EA +    +QV+PD    +WG LL
Sbjct: 734 EGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDS--RVWGALL 790

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A ++H  V++A +A+ + +E +      +V LSN YA AG W+ V  +R  M   G+ K
Sbjct: 791 GACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVK 850

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PG SW+E+  + + FY+ +    +  E+ + L  L  +M++ GYV   T  V  DVED 
Sbjct: 851 KPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYV-PDTRYVLHDVEDN 909

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E+ +  HSERLA+ +GL+  P    I I KNLR+C DCH   K IS I +R  + RD 
Sbjct: 910 EKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDS 969

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++G CSCGDFW
Sbjct: 970 NRFHHFKDGVCSCGDFW 986



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 215/396 (54%), Gaps = 8/396 (2%)

Query: 37  LQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C   K+L     +++ I KSG   + F  N LIN Y +   T  A+Q+FD+M E +V
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDV 176

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            S+  L+ GY+  G  + A  L ++M+ + V P++ TF +++ AC+   ++  G++++  
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNL 236

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G+  +L V ++L++M+ KC D+  A +VFD +  R++V+WTS+I   A++ +  +A
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
             +F+    +   +P++    S++ AC     L  GK  H  +   G +    V +A++ 
Sbjct: 297 CNLFQRMEEEGV-QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS 355

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCGS+  + +VF+ +   +VV++T+MI G A++G    +   FN+MI  GI+PN VT
Sbjct: 356 MYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVT 415

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ +L ACS    +  G Q  D +    G   D +  T ++ M  + G L +A+++ + I
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
                   + W  +++A   H + D A+     L++
Sbjct: 475 S---KQNVVAWNAMITAYVQHEQYDNALATFQALLK 507



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 210/404 (51%), Gaps = 8/404 (1%)

Query: 30  KAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  L  C   +++     +++ ILK+G+ ++ F    LIN +++      A ++FD
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            +   ++V++TS++ G    G+ + A  LFQ+M    V P++  F ++++AC+    L  
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GK++H  ++  G+   + V ++++ MY KC  ++ A  VFDL+  RNVVSWT++I   AQ
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQ 390

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           + +  EA   F +   +S   PN+    S++ AC+S   L  G+     ++ +G   +D 
Sbjct: 391 HGRIDEAFLFFNKM-IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V +AL+ MYAKCGS+  + +VF +IS  +VV + +MI    ++     +L  F  ++  G
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           IKPN  TF  +L+ C  S  ++ G + +  +  K G+  D      +V M    G L  A
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
             L   +   P    + W T+++    HG+  +A +    + ES
Sbjct: 569 KNLFNDM---PKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 171/304 (56%), Gaps = 11/304 (3%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T++ +++ C    +L  G++I+ HI+  G Q ++ + ++L++MY KC +   A+++FD M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             ++V SW  ++  + Q+    EA ++  +   Q   +P++    S++NACA    +  G
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQM-VQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  + +++++G + +  V +AL++M+ KCG +  + KVF+ +    +VT+TSMI G A++
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G  + + +LF  M   G++P+ V FV +L AC+H   +++G + + +  ++ G   +   
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG-KKVHARMKEVGWDTEIYV 349

Query: 370 YTCVVDMLGRTGRLDEA---YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            T ++ M  + G +++A   + L K   V      + W  +++    HGR+D A    N+
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNV------VSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 427 LIES 430
           +IES
Sbjct: 404 MIES 407


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 347/603 (57%), Gaps = 6/603 (0%)

Query: 4   SLTRNLIFTL-AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNT 62
           +L R  +  L AAS +      +  H     I    E + L     VH+ ++ + +    
Sbjct: 18  ALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAV 77

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F    L+  YVR      AR + D M E +VVS+T++++GY    +   AL LF KML  
Sbjct: 78  FLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRA 137

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
              PNE+T ATV+ +CS    +  GKQ+H+ +    F+ ++ V SSL+DMY K  ++  A
Sbjct: 138 GCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEA 197

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           RRVFD +  R+VVS T+II  +AQ     EAL++FR+  Y    + N     +++ A + 
Sbjct: 198 RRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSG 256

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  GK  H +++R    F   + ++L+DMY+KCG + YS +VF+ +   SVV++ +M
Sbjct: 257 LASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAM 316

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           ++G  ++GLG   + LF ++  + +KP+ VT + VL  CSH GLVDEG+   D++ ++  
Sbjct: 317 LMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQS 375

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            +    HY C++D+LGR+GRL++A  L +++    +  P +WG+LL A R+H  V +   
Sbjct: 376 ALLHTGHYGCIIDLLGRSGRLEKALNLIENMPF--ESTPSIWGSLLGACRVHANVHVGEL 433

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
            + +L+E   + A  YV LSN YA AG W++V  +R  M    + KEPG SW+ +    +
Sbjct: 434 VAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIH 493

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F++         ++ + ++E+   +K  G+V      V  DV+DE +E ++  HSE+LA
Sbjct: 494 TFHSSERFHPSKKDINAKIKEIFVDIKAAGFV-PDLSCVLHDVDDEQKERMLLGHSEKLA 552

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           + FGL++ P G+TIR+MKNLR+C DCH+  K +S + ER+  +RD NRFH   +G+C+CG
Sbjct: 553 ITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCG 612

Query: 603 DFW 605
           D+W
Sbjct: 613 DYW 615


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 332/560 (59%), Gaps = 9/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K  F+ N F  N L++ Y +  +   A +LF EM E + +SY  L+  Y   G+
Sbjct: 321 VHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGR 380

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +L LF+++         F FAT++   ++  +L  G+QIH+          ++V +S
Sbjct: 381 VKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS 440

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC +   A R+F  +  ++ V WT++I ++ Q     + L++F E   +++   
Sbjct: 441 LVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQ-RAKIGA 499

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +    AS++ ACASL  L  GK  H  ++ SG   N    SALVDMYAKCGS+  + ++F
Sbjct: 500 DAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMF 559

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   + V++ ++I   A+ G G  +L LF EM+  G++P+ V+ + +L ACSH GLV+
Sbjct: 560 QEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVE 619

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+Q+ DSM R Y ++P  +HY   +DML R GR DEA KL   +  +PD   ++W ++L
Sbjct: 620 EGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPD--EIMWSSVL 677

Query: 409 SASRLHGRVDIAVEASNQLIESNQQV---ANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           ++  +H   ++A +A+NQL   N +V   A  YVT+SN YA AGEW+NV  ++  M+  G
Sbjct: 678 NSCGIHKNQELAKKAANQLF--NMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERG 735

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K P  SWVEI+ +T+ F A +    +  E++  L ELE KM ++GY    +     +V
Sbjct: 736 VKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGY-KPDSSCALHNV 794

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ++E + E +  HSER+A+AF LIS P+G  I +MKNLR C DCH   K+IS IV R+  V
Sbjct: 795 DEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITV 854

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD +RFHHFR+G C+C D+W
Sbjct: 855 RDSSRFHHFRDGFCTCRDYW 874



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 195/385 (50%), Gaps = 5/385 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS ++K G+ S     N L++ Y + +   +A QLF+++ E + V++ +L+ GY   G 
Sbjct: 220 VHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGF 279

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ LF KM      P EFTFA ++ A   L D+  G+Q+H  +    F +N+ V ++
Sbjct: 280 NREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANA 339

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y K + V  A ++F  M   + +S+  ++  +A N +  E+LE+F+E  +   DR 
Sbjct: 340 LLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRR 399

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    A++++  A    L  G+  H   + +      +V ++LVDMYAKCG    ++++F
Sbjct: 400 N-FPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIF 458

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++  S V +T+MI    + GL    L LF EM    I  +  T+  ++ AC+    + 
Sbjct: 459 SDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLT 518

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q L S     G I +    + +VDM  + G + +A ++    Q  P    + W  L+
Sbjct: 519 LGKQ-LHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQM---FQEMPVRNSVSWNALI 574

Query: 409 SASRLHGRVDIAVEASNQLIESNQQ 433
           SA   +G  D  +    +++ S  Q
Sbjct: 575 SAYAQNGDGDCTLRLFEEMVRSGLQ 599



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 192/423 (45%), Gaps = 31/423 (7%)

Query: 3   KSLTRNLIFTLAA--------SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEIL 54
           K  TRNL+ TL A        +S+ +     + +     ++   +   L     +  E+ 
Sbjct: 69  KPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMP 128

Query: 55  KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALL 114
                 N F+ N +I  Y++      AR LFD M +   V++T L+ GY    Q + A  
Sbjct: 129 HK----NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFG 184

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           LF +M  + + P+  + AT++   +    +   +Q+H+H+   G+   LVV +SL+D Y 
Sbjct: 185 LFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYC 244

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNYQSRDRPNQH 231
           K   +  A ++F+ +  R+ V++ +++  +++     EA+ +F   +E  Y    RP + 
Sbjct: 245 KTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGY----RPTEF 300

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
             A+++ A   L  +  G+  HG VV+    +N  VA+AL+D Y+K   V  + K+F  +
Sbjct: 301 TFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEM 360

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
                ++Y  ++   A  G  + SL+LF E+   G    +  F  +L   + S  +D G 
Sbjct: 361 PEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGR 420

Query: 352 QHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           Q          I+ DA     V    VDM  + G   EA ++   + +      + W  +
Sbjct: 421 Q-----IHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQ---SSVPWTAM 472

Query: 408 LSA 410
           +S+
Sbjct: 473 ISS 475


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 331/579 (57%), Gaps = 7/579 (1%)

Query: 30  KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  L  C    +LA   +VH++ + +G + +      LI  Y      + AR++FD
Sbjct: 259 KISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFD 318

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            M   +VVS+T ++ GY   G  + A  LF  M    + P+  T+  ++ AC++ A+L  
Sbjct: 319 NMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNH 378

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            ++IH+ ++  GF  +L+V ++LV MY KC  +  AR+VFD M  R+VVSW+++I A+ +
Sbjct: 379 AREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVE 438

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N  G EA E F     +S   P+     +++NAC  LG L  G   +   +++    +  
Sbjct: 439 NGYGTEAFETFHLMK-RSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVP 497

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           + +AL+ M AK GSV  +  +F+ +    V+T+ +MI G + +G  R +L LF+ M+   
Sbjct: 498 LGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKER 557

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            +PN VTFVGVL ACS +G VDEG +    +    GI+P  K Y C+VD+LGR G LDEA
Sbjct: 558 FRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEA 617

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L KS+ V P     +W +LL A R+HG +D+A  A+ + +  +      YV LS+ YA
Sbjct: 618 ELLIKSMPVKPTSS--IWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYA 675

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG WENV  +R  M+  GI KE GC+W+E+  + + F   +       E+ + L  L  
Sbjct: 676 AAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMN 735

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
            +K  GY+   T  V  DV ++ +EE +  HSE+LA+A+G++S+P G  IRI KNLR+C 
Sbjct: 736 AIKREGYI-PITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCS 794

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH   K IS +  R+ + RD +RFHHF++G CSCGD+W
Sbjct: 795 DCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 215/438 (49%), Gaps = 45/438 (10%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +++  Q C  L   A    V   I++ G   N + LN LI  Y        ARQ+FD + 
Sbjct: 60  YVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVE 119

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              VV++ +L+AGY  +G  + A  LF++M+   + P+  TF +V+ ACS  A L  GK+
Sbjct: 120 NKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKE 179

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  + T GF  +  + ++LV MY K   +D AR+VFD +  R+V ++  ++  +A++  
Sbjct: 180 VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD 239

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A E+F     Q   +PN+    S+++ C +   L  GK  H   + +G   +  VA+
Sbjct: 240 WEKAFELFYRMQ-QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVAT 298

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+ MY  CGS+  + +VF+ +    VV++T MI G A+ G    +  LF  M   GI+P
Sbjct: 299 SLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQP 358

Query: 330 NDVTFVGVLHACSHSG---------------------LVDEGIQHLDSMYRKYGIIPDAK 368
           + +T++ +++AC+ S                      LV   + H   MY K G I DA+
Sbjct: 359 DRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVH---MYAKCGAIKDAR 415

Query: 369 H------------YTCVVDMLGRTGRLDEAYK---LAKSIQVDPDGGPLLWGTLLSASRL 413
                        ++ ++      G   EA++   L K   ++PDG  + +  LL+A   
Sbjct: 416 QVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDG--VTYINLLNACGH 473

Query: 414 HGRVDIAVEASNQLIESN 431
            G +D+ +E   Q I+++
Sbjct: 474 LGALDVGMEIYTQAIKAD 491



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 178/376 (47%), Gaps = 53/376 (14%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  + + C+ L D   GKQ+  HI   G Q N+   ++L+ +Y  C +V  AR++FD +
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             + VV+W ++I  +AQ     EA  +FR+   +  + P+     SV++AC+S   L  G
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE-PSIITFLSVLDACSSPAGLNWG 177

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  VV +G   +  + +ALV MY K GS++ + +VF+ +    V T+  M+ G AK 
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVL---------------HA-CSHSGLVDEGIQH 353
           G    + +LF  M   G+KPN ++F+ +L               HA C ++GLVD+ I+ 
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD-IRV 296

Query: 354 LDSMYRKY---GIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKSIQ---V 395
             S+ R Y   G I  A+             +T +++     G +++A+ L  ++Q   +
Sbjct: 297 ATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGI 356

Query: 396 DPD--------GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
            PD            +   L  A  +H +VDIA   ++ L+ +          L + YA 
Sbjct: 357 QPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVST---------ALVHMYAK 407

Query: 448 AGEWENVHSLRSEMKR 463
            G  ++   +   M R
Sbjct: 408 CGAIKDARQVFDAMPR 423


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 330/576 (57%), Gaps = 7/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  L  C  L +L     +H+ I++S + S+      L   Y++    + AR++F+ + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +V+++ +++ G+++ GQ + A   F +ML   V P+  T+ TV+ AC+    L  GK+
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH      G   ++   ++L++MY K   +  AR+VFD M  R+VVSWT+++  +A   Q
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E+   F++   Q   + N+     V+ AC++   L  GK  H  VV++G   +  V +
Sbjct: 413 VVESFTTFKQM-LQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTN 471

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY KCGSV  + +VF  +S   VVT+ ++I G  + G G  +L  +  M S G++P
Sbjct: 472 ALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRP 531

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N  TFV VL AC    LV+EG +    M + YGI+P  KHY C+VD+L R G L EA  +
Sbjct: 532 NAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDV 591

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             +I + P     +WG LL+A R+H  V+I   A+   ++   Q A  YV+LS  YA AG
Sbjct: 592 ILTIPLKPSAA--MWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAG 649

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W +V  LR  MK  G+ KEPG SW+EI  + ++F A +    R  E+ + L  L+++MK
Sbjct: 650 MWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMK 709

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GYV   T  V  D++DE +E  V  HSE+LA+A+GLIS P G  IRI KNLR+C DCH
Sbjct: 710 SLGYV-PDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCH 768

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS I +R+ + RD +RFHHF+NG CSCGD+W
Sbjct: 769 TATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 196/379 (51%), Gaps = 8/379 (2%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +++ LQ C     LA    VH  IL+ G   N +  N L+  Y        ARQLFD+  
Sbjct: 31  YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +VVS+  +++GY + G  Q A  LF  M    + P++FTF +++ ACS  A L  G++
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  +   G   +  V ++L+ MY KC  V  ARRVFD M  R+ VSWT++  A+A++  
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G E+L+ +     Q R RP++    +V++AC SL  L  GK  H  +V S    +  V++
Sbjct: 211 GEESLKTYHAM-LQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVST 269

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL  MY KCG+   + +VF  +S   V+ + +MI G    G    +   F+ M+  G+ P
Sbjct: 270 ALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAP 329

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  T+  VL AC+  G +  G + + +   K G++ D +    +++M  + G + +A ++
Sbjct: 330 DRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQV 388

Query: 390 AKSIQVDPDGGPLLWGTLL 408
              +   P    + W TLL
Sbjct: 389 FDRM---PKRDVVSWTTLL 404



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 180/377 (47%), Gaps = 43/377 (11%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + + +  ++++C    DL  GKQ+H HI   G + N+ + ++L+ +Y  C  V+ AR++F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D    ++VVSW  +I  +A      EA  +F     Q R  P++    S+++AC+S   L
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLF-TLMQQERLEPDKFTFVSILSACSSPAVL 145

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+  H  V+ +G   +  V +AL+ MYAKCGSV  + +VF+ +++   V++T++    
Sbjct: 146 NWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 205

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-------------- 352
           A+ G G  SL  ++ M+   ++P+ +T++ VL AC     +++G Q              
Sbjct: 206 AESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 353 ----HLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKSI--- 393
                L  MY K G   DA+             +  ++     +G+L+EA+     +   
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEE 325

Query: 394 QVDPDGGPLLWGTLLSASRLHGRV----DIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            V PD     + T+LSA    G +    +I   A+   + S+ +  NA   L N Y+ AG
Sbjct: 326 GVAPDRA--TYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNA---LINMYSKAG 380

Query: 450 EWENVHSLRSEMKRTGI 466
             ++   +   M +  +
Sbjct: 381 SMKDARQVFDRMPKRDV 397


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/544 (37%), Positives = 334/544 (61%), Gaps = 10/544 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + AR++FDE+ E +VVS+ +++ GY+  G+ + AL LF++M+   V P+
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETF----GFQYNLVVCSSLVDMYGKCNDVDGAR 183
           E T  +V+ AC+    +  G+Q+H+ ++      GF  +L + ++L+D+Y KC DV+ A 
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            +F+ + C++VVSW ++I  +       EAL +F+E   +S + PN   L SV+ ACA L
Sbjct: 256 GLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM-LRSGECPNDVTLLSVLPACAHL 314

Query: 244 GRLVSGKVAHGVVVRS--GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           G +  G+  H  + +   G      + ++L+DMYAKCG +  + +VFN +   S+ ++ +
Sbjct: 315 GAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNA 374

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G A +G    + DLF+ M    ++P+D+TFVG+L ACSHSGL+D G Q   SM + Y
Sbjct: 375 MIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDY 434

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            + P  +HY C++D+LG +G   EA ++  ++ ++PDG  ++W +LL A + HG +++A 
Sbjct: 435 NLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDG--VIWCSLLKACKKHGNLELAE 492

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
             + +LI+   + + +YV LSN YA AG WE+V  +R  +   G+ K PGCS +E+    
Sbjct: 493 SFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVV 552

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F  G+ L  R  E+  +L E++ +++E G+    T  V  ++E+E +E  +  HSE+L
Sbjct: 553 HEFIIGDKLHPRRREIYHMLEEMDVQLEEAGF-APDTSEVLQEMEEEWKEGALRHHSEKL 611

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFGLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ V RD  RFHHFR+G CSC
Sbjct: 612 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSC 671

Query: 602 GDFW 605
            D+W
Sbjct: 672 CDYW 675



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 192/380 (50%), Gaps = 44/380 (11%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNEFTFATVIKAC 138
           A  +F+ + EPN++ + +++ G+ +   P  AL ++ +M  LG+L  PN ++F  ++K+C
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL--PNSYSFPFLLKSC 74

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF------DLMGC- 191
           +       G+QIH  +   G   +  V +SL+ MY +   ++ AR+VF      D++ C 
Sbjct: 75  AKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCT 134

Query: 192 ------------------------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
                                   R+VVSW ++I  + +N +  EALE+F+E   ++  R
Sbjct: 135 ALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM-MRTNVR 193

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRS----GCEFNDVVASALVDMYAKCGSVNY 283
           P++  L SV++ACA  G +  G+  H  V       G   +  + +AL+D+Y+KCG V  
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  +F  +S   VV++ ++I G     L + +L LF EM+  G  PNDVT + VL AC+H
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAH 313

Query: 344 SGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            G +D G   H+    +  G+  +    T ++DM  + G ++ A+++  S+         
Sbjct: 314 LGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS-- 371

Query: 403 LWGTLLSASRLHGRVDIAVE 422
            W  ++    +HGR + A +
Sbjct: 372 -WNAMIFGFAMHGRANAAFD 390



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 134/262 (51%), Gaps = 13/262 (4%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           GF S+   +N LI+ Y +    + A  LF+ +   +VVS+ +L+ GY +    + ALLLF
Sbjct: 230 GFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLF 289

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET--FGFQYNLVVCSSLVDMYG 174
           Q+ML +   PN+ T  +V+ AC+ L  +  G+ IH +I+    G      + +SL+DMY 
Sbjct: 290 QEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYA 349

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           KC D++ A +VF+ M  R++ SW ++I   A + + + A ++F      +R  P+     
Sbjct: 350 KCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMR-GNRVEPDDITFV 408

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS-----ALVDMYAKCGSVNYSDKVFN 289
            +++AC+  G L  G+     + +S  +  ++         ++D+    G    ++++ +
Sbjct: 409 GLLSACSHSGLLDLGR----QIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIH 464

Query: 290 RIS-NPSVVTYTSMIVGAAKYG 310
            +   P  V + S++    K+G
Sbjct: 465 TMPMEPDGVIWCSLLKACKKHG 486



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 23  KRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKS--GFLSNTFTLNHLINCYVRLKK 77
           +   C      +  L  C HL ++     +H  I K   G  + T     LI+ Y +   
Sbjct: 294 RSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGD 353

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + A Q+F+ ML  ++ S+ +++ G+   G+   A  LF +M GN V P++ TF  ++ A
Sbjct: 354 IEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSA 413

Query: 138 CSMLADLITGKQI-HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVV 195
           CS    L  G+QI  +  + +     L     ++D+ G       A  +   M    + V
Sbjct: 414 CSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGV 473

Query: 196 SWTSIIVAHAQNAQGHEALEMFREF 220
            W S++ A     + H  LE+   F
Sbjct: 474 IWCSLLKA----CKKHGNLELAESF 494



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 11/191 (5%)

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+  VF  I  P+++ + +M+ G A       +L+++  M+S G  PN  +F  +L +C+
Sbjct: 16  YAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCA 75

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL--AKSIQVDPDGG 400
            S   +EG Q + +   K G   D   +T ++ M  R G L++A K+  A S +      
Sbjct: 76  KSKAFEEGRQ-IHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCT 134

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            L+ G    ASR  G    A +  +++ E +    NA +T    Y   G +E    L  E
Sbjct: 135 ALITGY---ASR--GDFRSARKVFDEITERDVVSWNAMIT---GYVENGRYEEALELFKE 186

Query: 461 MKRTGIHKEPG 471
           M RT +  + G
Sbjct: 187 MMRTNVRPDEG 197


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 329/559 (58%), Gaps = 26/559 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VHS  +KS F       N L++ Y +      A ++F++M E NVVS+TS++AGY   G
Sbjct: 272 AVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +   A+ L Q+M    V  +     +++ AC+    L  GK +H +I+    + NL VC+
Sbjct: 332 RSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  +DGA  VF  M  ++++SW ++I                         +
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI----------------------GELK 429

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +A ++ ACASL  L  GK  HG ++R+G   +  VA+ALVD+Y KCG +  +  +
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I +  +V++T MI G   +G G  ++  FNEM   GI+P++V+F+ +L+ACSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +    M   + I P  +HY C+VD+L RTG L +AY+  +++ + PD    +WG L
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDA--TIWGAL 607

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   R++  +++A + + ++ E   +    YV L+N YA A +WE V  +R ++ + G+ 
Sbjct: 608 LCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLR 667

Query: 468 KEPGCSWVEIRDQTYAFYAGN-ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
           K PGCSW+EI+ +   F +GN +      ++ SLL+++ RKMKE GY   KT    ++ +
Sbjct: 668 KNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP-KTKYALINAD 726

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  +E  +  HSE+LA+AFGL+++P   T+R+ KNLR+C DCH++ K +S    R+ V+R
Sbjct: 727 EMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLR 786

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF+NG CSC  FW
Sbjct: 787 DSNRFHHFKNGYCSCRGFW 805



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 179/352 (50%), Gaps = 26/352 (7%)

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
           K+ + A +LFD++ + +V+S+ S+++GY++ G  +  L ++++M+   +  +  T  +V+
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVL 258

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
             C+    L  GK +H+      F+  +   ++L+DMY KC D+DGA RVF+ MG RNVV
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWTS+I  + ++ +   A+ + ++   +   + +     S+++ACA  G L +GK  H  
Sbjct: 319 SWTSMIAGYTRDGRSDGAIRLLQQMEKEGV-KLDVVATTSILHACARSGSLDNGKDVHDY 377

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +  +  E N  V +AL+DMY KCGS++ ++ VF+ +    ++++ +MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI------------ 425

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
                      +KP+  T   +L AC+    ++ G + +     + G   D      +VD
Sbjct: 426 ---------GELKPDSRTMACILPACASLSALERG-KEIHGYILRNGYSSDRHVANALVD 475

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +  + G L  A  L   I   P    + W  ++S   +HG  + A+   N++
Sbjct: 476 LYVKCGVLGLARLLFDMI---PSKDLVSWTVMISGYGMHGYGNEAIATFNEM 524



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 60/341 (17%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+++V++ C+    L  GK++H+ I++     + V+   LV +Y  C D+   RRVFD M
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 190 GCRN---------------------------------------------------VVSWT 198
             +N                                                   V+SW 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I  +  N      LE++++  Y   D  +   + SV+  CA+ G L  GK  H + ++
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGID-VDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           S  E     ++ L+DMY+KCG ++ + +VF ++   +VV++TSMI G  + G    ++ L
Sbjct: 280 STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--VVDM 376
             +M   G+K + V    +LHAC+ SG +D G    D  Y K   + ++  + C  ++DM
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHD--YIKANNM-ESNLFVCNALMDM 396

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             + G +D A  +  ++ V      + W T++   +   R 
Sbjct: 397 YTKCGSMDGANSVFSTMVVK---DIISWNTMIGELKPDSRT 434


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 335/583 (57%), Gaps = 35/583 (6%)

Query: 54  LKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
           +K GF SN F     I+ +   +   +AR++FD      VV++  +++GY  + Q + + 
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSK 193

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
           +LF +M    V PN  T   ++ ACS L DL  GK I+ +I     + NL++ + L+DM+
Sbjct: 194 MLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMF 253

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ------------------------ 209
             C ++D A+ VFD M  R+V+SWTSI+   A   Q                        
Sbjct: 254 AACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMID 313

Query: 210 GH-------EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
           G+       EAL +FRE    S  +P++  + S++ ACA LG L  G+     + ++  +
Sbjct: 314 GYLRMNRFIEALALFREMQ-MSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIK 372

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            +  V +AL+DMY KCG+V  + KVF  + +    T+T+MIVG A  G G  +L +F+ M
Sbjct: 373 NDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNM 432

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           I   I P+++T++GVL AC+H+G+V++G     SM  ++GI P+  HY C+VD+LGR GR
Sbjct: 433 IEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGR 492

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L+EA+++  ++ V P+   ++WG+LL A R+H  V +A  A+ Q++E   +    YV L 
Sbjct: 493 LEEAHEVIVNMPVKPNS--IVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLC 550

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N YA    WEN+  +R  M   GI K PGCS +E+    Y F AG+    +  E+ + L 
Sbjct: 551 NIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLE 610

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
            + + + + GY    T  VF+D+ +E +E  +  HSE+LA+A+ LIS   GITIRI+KNL
Sbjct: 611 NMMQDLIKAGY-SPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNL 669

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RMC DCH + KL+S+   R+ +VRD  RFHHFR+GSCSC +FW
Sbjct: 670 RMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 201/431 (46%), Gaps = 38/431 (8%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN--CYVRLKKTQVARQLFDEMLEP 91
           I  L++CK +  L  +HS  +K G  S+      +I   C     K   ARQ+FD + +P
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQP 70

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
            +  + +++ GY  +  PQ  + ++  ML + + P+ FTF  ++K  +    L  GK + 
Sbjct: 71  TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            H    GF  NL V  + + M+  C  VD AR+VFD+     VV+W  ++  + +  Q  
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK 190

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           ++  +F E   +    PN   L  +++AC+ L  L  GK  +  +     E N ++ + L
Sbjct: 191 KSKMLFIEMEKRGVS-PNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVL 249

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG--------------------- 310
           +DM+A CG ++ +  VF+ + N  V+++TS++ G A  G                     
Sbjct: 250 IDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWT 309

Query: 311 --------LGRF--SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
                   + RF  +L LF EM    +KP++ T V +L AC+H G ++ G + + +   K
Sbjct: 310 AMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDK 368

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             I  D      ++DM  + G + +A K+ K +          W  ++    ++G  + A
Sbjct: 369 NSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH---HKDKFTWTAMIVGLAINGHGEEA 425

Query: 421 VEASNQLIESN 431
           +   + +IE++
Sbjct: 426 LAMFSNMIEAS 436


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 345/565 (61%), Gaps = 24/565 (4%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMAGYINMGQPQIALL 114
           + +  + N ++  Y ++ + + A +LF++M E     +VV++++ ++GY   G    AL 
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--------NLVVC 166
           + ++ML + + PNE T  +V+  C+ +  L+ GK+IH +   +            N+V+ 
Sbjct: 352 VCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI- 410

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQ 223
           + L+DMY KC  VD AR +FD +    R+VV+WT +I  ++Q+   ++ALE+  E F   
Sbjct: 411 NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV---VASALVDMYAKCGS 280
            + RPN   ++  + ACASL  L  GK  H   +R+  + N V   V++ L+DMYAKCGS
Sbjct: 471 CQTRPNAFTISCALVACASLAALRIGKQIHAYALRN--QQNAVPLFVSNCLIDMYAKCGS 528

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ +  VF+ +   + VT+TS++ G   +G G  +L +F+EM   G K + VT + VL+A
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSHSG++D+G+++ + M   +G+ P  +HY C+VD+LGR GRL+ A +L + + ++P   
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPP-- 646

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P++W   LS  R+HG+V++   A+ ++ E       +Y  LSN YA AG W++V  +RS 
Sbjct: 647 PVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSL 706

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M+  G+ K PGCSWVE    T  F+ G+       E+  +L +  +++K+ GYV  +TG 
Sbjct: 707 MRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYV-PETGF 765

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
              DV+DE +++++  HSE+LALA+G+++ P+G  IRI KNLR+C DCH  F  +S I++
Sbjct: 766 ALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIID 825

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
            D ++RD +RFHHF+NGSCSC  +W
Sbjct: 826 HDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 224/484 (46%), Gaps = 49/484 (10%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQ--LQECKHLISLASVHSEILKSGFLSNT 62
           + R L+   AA+   +  K S   T A  I    + +CK +  +  +H ++L  G L+  
Sbjct: 1   MIRRLLIPNAAAKSHQYIKVSLFSTSAPEITPPFIHKCKTISQVKLIHQKLLSFGILTLN 60

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
            T +HLI+ Y+ +     A  L       +  V  + SL+  Y + G     L LF  ++
Sbjct: 61  LT-SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLF-GLM 118

Query: 121 GNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
            +L W P+ +TF  V KAC  ++ +  G+  H      GF  N+ V ++LV MY +C  +
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSL 178

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             AR+VFD M   +VVSW SII ++A+  +   ALEMF     +   RP+   L +V+  
Sbjct: 179 SDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPP 238

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           CASLG    GK  H   V S    N  V + LVDMYAKCG ++ ++ VF+ +S   VV++
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298

Query: 300 TSMIV-----------------------------------GAAKYGLGRFSLDLFNEMIS 324
            +M+                                    G A+ GLG  +L +  +M+S
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSM-----YRKYGIIPDAKHYTCVVDMLG 378
            GIKPN+VT + VL  C+  G +  G + H  ++      RK G   +      ++DM  
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           +  ++D A  +  S+    +   + W  ++     HG  + A+E  +++ E + Q     
Sbjct: 419 KCKKVDTARAMFDSLS-PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477

Query: 439 VTLS 442
            T+S
Sbjct: 478 FTIS 481



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 23/289 (7%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYTSLMAGYINMGQP 109
           ++ K+G       +N LI+ Y + KK   AR +FD +   E +VV++T ++ GY   G  
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456

Query: 110 QIALLLFQKMLGN--LVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVC 166
             AL L  +M        PN FT +  + AC+ LA L  GKQIH + +        L V 
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS 516

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+DMY KC  +  AR VFD M  +N V+WTS++  +  +  G EAL +F E       
Sbjct: 517 NCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFK 576

Query: 227 RPNQHMLASVINACASLGRLVSG-------KVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
                +L  V+ AC+  G +  G       K   G  V  G E      + LVD+  + G
Sbjct: 577 LDGVTLLV-VLYACSHSGMIDQGMEYFNRMKTVFG--VSPGPEH----YACLVDLLGRAG 629

Query: 280 SVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEMIS 324
            +N + ++   +   P  V + + +     +G   LG ++ +   E+ S
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELAS 678


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 318/554 (57%), Gaps = 35/554 (6%)

Query: 84  LFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           LF++ ++  NV S+ S++A     G    AL  F  M    + PN  TF   IK+CS L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR------------------- 183
           DL +G+Q H     FGF+ +L V S+LVDMY KC ++  AR                   
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 184 ------------RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
                       RVFD M  R+V+SW SII  +AQN    E++E+F           N  
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L++V+ ACA  G    GK  H  V++ G E N  V ++++DMY KCG V  + K F+R+
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
              +V ++++M+ G   +G  + +L++F EM   G+KPN +TFV VL ACSH+GL++EG 
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
               +M  ++ + P  +HY C+VD+LGR G L EA+ L K +++ PD   ++WG LL A 
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDF--VVWGALLGAC 388

Query: 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPG 471
           R+H  VD+   ++ +L E + +    YV LSN YA AG WE+V  +R  MK +G+ K PG
Sbjct: 389 RMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPG 448

Query: 472 CSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEARE 531
            S V+I+ + + F  G+    +  ++   L +L  K++E GYV   T  V  DV  E +E
Sbjct: 449 FSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTS-VLHDVGHEEKE 507

Query: 532 EIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRF 591
            ++ +HSE+LA+AFG+++   G TI I+KNLR+C DCH   K IS IV+R+ VVRD  RF
Sbjct: 508 MVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRF 567

Query: 592 HHFRNGSCSCGDFW 605
           HHFR+G CSCGD+W
Sbjct: 568 HHFRDGLCSCGDYW 581



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 54/335 (16%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLIN 70
           A  + +   K S    ++ F   ++ C  L+ L S    H + L  GF  + F  + L++
Sbjct: 60  ALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVD 119

Query: 71  CYVRLKKTQVARQLFDE-------------------------------MLEPNVVSYTSL 99
            Y +  + + AR LFDE                               M E +V+S+ S+
Sbjct: 120 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSI 179

Query: 100 MAGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           +A Y   G    ++ +F +M+  G + + N  T + V+ AC+       GK IH  +   
Sbjct: 180 IAVYAQNGMSTESMEIFHRMVKDGEINY-NAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 238

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G + N+ V +S++DMY KC  V+ AR+ FD M  +NV SW++++  +  +    EALE+F
Sbjct: 239 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 298

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSG-----KVAHGVVVRSGCEFNDVVASALV 272
            E N     +PN     SV+ AC+  G L  G      ++H   V  G E        +V
Sbjct: 299 YEMNMAGV-KPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEH----YGCMV 353

Query: 273 DMYAKCGSVNYSDKVFNRISN----PSVVTYTSMI 303
           D+  + G   Y  + F+ I      P  V + +++
Sbjct: 354 DLLGRAG---YLKEAFDLIKGMKLRPDFVVWGALL 385


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/631 (36%), Positives = 354/631 (56%), Gaps = 43/631 (6%)

Query: 14  AASSLTRQNKRSSCHTKAH--FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINC 71
            +S++   +  SS    +H  F+Q L++   L  +  +H++++  G   NT  L  LI+ 
Sbjct: 37  TSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHS 96

Query: 72  YVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKML--GNLVWPNE 128
           Y+  +    AR +FD+    P  + +  ++  Y      Q +L LF +ML  G     ++
Sbjct: 97  YIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADK 156

Query: 129 FTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           +TF  V  ACS    L   G+ +H  +   G++ ++ V +SLV+MY   + +  A+RVFD
Sbjct: 157 YTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFD 216

Query: 188 LMGCRNVVSWTSIIVAHAQNAQ---------------------------GH----EALEM 216
            M  R+V++WTS++  +A   +                           GH    EAL+ 
Sbjct: 217 EMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQC 276

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F +       +PN+ +L S+++ACA LG L  GK  H  + ++    +  +++AL+DMYA
Sbjct: 277 FNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYA 336

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG ++ + +VF+ +    ++T+TSMI G + +GLG   L  F+EM++ G KP+D+T +G
Sbjct: 337 KCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLG 396

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL+ CSHSGLV+EG+     M   +GI+P  +HY C++D+LGR GRL+ A++  KS+ ++
Sbjct: 397 VLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPME 456

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE-SNQQVANAYVTLSNTYALAGEWENVH 455
           PD   + W  LLSA R+HG VD+     N + E         YV LSN YA  G+WE+V 
Sbjct: 457 PD--VVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVT 514

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK-ERGYV 514
            +R  M + G    PGCSW+EI    + F A + L  R SE+   L E+ R++  E GYV
Sbjct: 515 KVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYV 574

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
                ++F D+ +E +E+ V  HSE+LA+AFGL+S  +G TIRI KNLR C DCH   K 
Sbjct: 575 PSTKQVLF-DLNEEDKEQAVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKT 632

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS +  R+ VVRD +RFH FR G+CSC D+W
Sbjct: 633 ISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 332/557 (59%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++ + +    F    L+  YVR      AR + D M E +VVS+T++++GY    +
Sbjct: 32  VHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTER 91

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF KML     PNE+T ATV+ +CS    +  GKQ+H+ +    F+ ++ V SS
Sbjct: 92  HVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSS 151

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K  ++  ARRVFD +  R+VVS T+II  +AQ     EAL++FR+  Y    + 
Sbjct: 152 LLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL-YSEGMQC 210

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     +++ A + L  L  GK  H +++R    F   + ++L+DMY+KCG + YS +VF
Sbjct: 211 NHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVF 270

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   SVV++ +M++G  ++GLG   + LF ++  + +KP+ VT + VL  CSH GLVD
Sbjct: 271 DNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVD 329

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+   D++ ++   +    HY C++D+LGR+GRL++A  L +++    +  P +WG+LL
Sbjct: 330 EGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPF--ESTPSIWGSLL 387

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R+H  V +    + +L+E   + A  YV LSN YA AG W++V  +R  M    + K
Sbjct: 388 GACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTK 447

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+ +    + F++         ++ + ++E+   +K  G+V      V  DV+DE
Sbjct: 448 EPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFV-PDLSCVLHDVDDE 506

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+ FGL++ P G+TIR+MKNLR+C DCH+  K +S + ER+  +RD 
Sbjct: 507 QKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDK 566

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH   +G+C+CGD+W
Sbjct: 567 NRFHLLTHGNCTCGDYW 583



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 142/253 (56%), Gaps = 2/253 (0%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           +   I AC     L  G+Q+H  + T  ++  + + + LV MY +C  +D AR V D M 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R+VVSWT++I  ++Q  +  EAL++F +   ++   PN++ LA+V+ +C+    +  GK
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKM-LRAGCIPNEYTLATVLTSCSGPQSIYQGK 131

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H ++V++  E +  V S+L+DMYAK  ++  + +VF+ +    VV+ T++I G A+ G
Sbjct: 132 QVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKG 191

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
           L   +LDLF ++ S G++ N VTF  ++ A S    +D G Q    + RK      A   
Sbjct: 192 LDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQN 251

Query: 371 TCVVDMLGRTGRL 383
           + ++DM  + G+L
Sbjct: 252 S-LIDMYSKCGKL 263



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           H   + I AC     L  G+  H  ++ +       + + LV MY +CG+++ +  V +R
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   SVV++T+MI G ++      +LDLF +M+  G  PN+ T   VL +CS    + +G
Sbjct: 71  MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG 130

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            Q + S+  K          + ++DM  ++  + EA ++  ++   P+   +    ++S 
Sbjct: 131 KQ-VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL---PERDVVSCTAIISG 186

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
               G  + A++   QL     Q  +   T   T AL+G
Sbjct: 187 YAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT-ALSG 224


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 322/543 (59%), Gaps = 4/543 (0%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
            + N LI  YV+    + AR+LFDEM   NV ++ +++AG  N G  + +L  F  M   
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + P+E+   ++ + C+ L D+++G+Q+H ++   G   ++ V SSL  MY +C  +   
Sbjct: 61  GMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDG 120

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
                 +   N+VS  + I    QN     ALE F        +  N     S + +C+ 
Sbjct: 121 EAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVE-ANAVTFVSAVTSCSD 179

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  G+  H + +++G +    V ++LV MY++CG +  S++V    S   +V  ++M
Sbjct: 180 LAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAM 239

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I     +G G+ ++ LF +M++ G +PN+VTF+ +L+ACSHSGL DEG+   + M + YG
Sbjct: 240 ISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYG 299

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           + P  KHYTC+VD+LGR+G L+EA  L  S+ V PDG  ++W TLLSA +   + D+A  
Sbjct: 300 LQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDG--VIWKTLLSACKTQKKFDMAER 357

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
            + ++IE +   + +YV LSN  A +  WE+V  +R  M+   + KEPG SWVE++ Q +
Sbjct: 358 IAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIH 417

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F  G+    R  E++  L E+  ++++ GY    + +VF D+EDE +E  +  HSE+LA
Sbjct: 418 QFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMS-MVFHDMEDEEKEVSLAHHSEKLA 476

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           +AF  +S+P+G+ IR+MKNLR+C DCH   KL+S ++ R+ VVRDV+RFHHF++G CSCG
Sbjct: 477 IAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCG 536

Query: 603 DFW 605
           D+W
Sbjct: 537 DYW 539


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 328/559 (58%), Gaps = 26/559 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VHS  +KS F       N L++ Y +      A ++F++M E NVVS+TS++AGY   G
Sbjct: 134 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 193

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A++L Q+M    V  +     +++ AC+    L  GK +H +I+      NL VC+
Sbjct: 194 WSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCN 253

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++GA  VF  M  ++++SW +++                         +
Sbjct: 254 ALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------------GELK 291

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +A ++ ACASL  L  GK  HG ++R+G   +  VA+ALVD+Y KCG +  +  +
Sbjct: 292 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 351

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I +  +V++T MI G   +G G  ++  FNEM   GI+P++V+F+ +L+ACSHSGL+
Sbjct: 352 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 411

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +    M   + I P  +HY C+VD+L RTG L +AYK  +++ + PD    +WG L
Sbjct: 412 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDA--TIWGAL 469

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   R++  +++A + + ++ E   +    YV L+N YA A +WE V  +R ++ + G+ 
Sbjct: 470 LCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLR 529

Query: 468 KEPGCSWVEIRDQTYAFYAGN-ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
           K PGCSW+EI+ +   F +GN +      ++ SLL+++ RKMKE GY   KT    ++ +
Sbjct: 530 KNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP-KTKYALINAD 588

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  +E  +  HSE+LA+AFGL+++P   TIR+ KNLR+C DCH++ K +S    R+ V+R
Sbjct: 589 EMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLR 648

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G CSC  FW
Sbjct: 649 DSNRFHHFKDGYCSCRGFW 667



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 180/352 (51%), Gaps = 26/352 (7%)

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
           K+++ A +LFD++ + +V+S+ S+++GY++ G  +  L ++++M+   +  +  T  +V+
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
             C+    L  GK +H+      F+  +   ++L+DMY KC D+DGA RVF+ MG RNVV
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWTS+I  + ++     A+ + ++   +   + +   + S+++ACA  G L +GK  H  
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGV-KLDVVAITSILHACARSGSLDNGKDVHDY 239

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +  +    N  V +AL+DMYAKCGS+  ++ VF+ +    ++++ +M VG          
Sbjct: 240 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM-VGE--------- 289

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
                      +KP+  T   +L AC+    ++ G + +     + G   D      +VD
Sbjct: 290 -----------LKPDSRTMACILPACASLSALERG-KEIHGYILRNGYSSDRHVANALVD 337

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +  + G L  A  L   I   P    + W  +++   +HG  + A+   N++
Sbjct: 338 LYVKCGVLGLARLLFDMI---PSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 386



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 99/233 (42%), Gaps = 52/233 (22%)

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRN----------------------------------- 193
           LV  Y  C D+   RRVFD M  +N                                   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 194 ----------------VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
                           V+SW S+I  +  N      L ++++  Y   D  +   + SV+
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID-VDLATIISVL 120

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
             CA  G L  GK  H + ++S  E     ++ L+DMY+KCG ++ + +VF ++   +VV
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           ++TSMI G  + G    ++ L  +M   G+K + V    +LHAC+ SG +D G
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG 233


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 326/555 (58%), Gaps = 7/555 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +L++ F  +    N LI  Y  +   + A  +F      ++VS+T++++GY N   
Sbjct: 330 IHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLM 389

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           PQ AL  ++ M    + P+E T A V+ ACS L +L  G  +H   +  G     +V +S
Sbjct: 390 PQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANS 449

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  +D A  +F     +N+VSWTSII+    N +  EAL  FRE     R +P
Sbjct: 450 LIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM--IRRLKP 507

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L  V++ACA +G L  GK  H   +R+G  F+  + +A++DMY +CG + Y+ K F
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + +  V ++  ++ G A+ G G  + +LF  M+   + PN+VTF+ +L ACS SG+V 
Sbjct: 568 FSVDH-EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVA 626

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+++ +SM  KY I+P+ KHY CVVD+LGR+G+L+EAY+  + + + PD  P +WG LL
Sbjct: 627 EGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPD--PAVWGALL 684

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           ++ R+H  V++   A+  + + +      Y+ LSN YA  G+W+ V  +R  M++ G+  
Sbjct: 685 NSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIV 744

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSWVE++   +AF + +    +  E+ +LL    +KMKE G  G ++    +D+ + 
Sbjct: 745 DPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESS--HMDIMEA 802

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           ++ +I   HSERLA+ FGLI+   G+ I + KNL MC+ CH++ K IS  V R+  VRD 
Sbjct: 803 SKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDA 862

Query: 589 NRFHHFRNGSCSCGD 603
            +FHHF+ G CSC D
Sbjct: 863 EQFHHFKGGICSCTD 877



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 201/390 (51%), Gaps = 7/390 (1%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L+    +H  +++ GF S+   +N LI  YV+      AR +FD+M   + +S+ ++++
Sbjct: 222 NLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMIS 281

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G     L LF  M+   V P+  T  +VI AC +L D   G+QIH ++    F  
Sbjct: 282 GYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGR 341

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + +SL+ MY     ++ A  VF    CR++VSWT++I  +       +ALE ++   
Sbjct: 342 DPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMME 401

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            +    P++  +A V++AC+ L  L  G   H V  + G     +VA++L+DMYAKC  +
Sbjct: 402 AEG-IMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCI 460

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + ++F+     ++V++TS+I+G         +L  F EMI R +KPN VT V VL AC
Sbjct: 461 DKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSAC 519

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +  G +  G + + +   + G+  D      ++DM  R GR++ A+K   S+    D   
Sbjct: 520 ARIGALTCG-KEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSV----DHEV 574

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESN 431
             W  LL+     G+   A E   +++ESN
Sbjct: 575 TSWNILLTGYAERGKGAHATELFQRMVESN 604



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 206/401 (51%), Gaps = 5/401 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N L++ +VR      A  +F  M + N+ S+  L+ GY   G    AL L+ +ML   V 
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+ +TF  V++ C  + +L+ G++IH H+  +GF+ ++ V ++L+ MY KC DV+ AR V
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R+ +SW ++I  + +N    E L +F        D P+   + SVI AC  LG 
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVD-PDLMTMTSVITACELLGD 323

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  HG V+R+    +  + ++L+ MY+  G +  ++ VF+R     +V++T+MI G
Sbjct: 324 DRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISG 383

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
                + + +L+ +  M + GI P+++T   VL ACS    +D G+ +L  + ++ G++ 
Sbjct: 384 YENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGM-NLHEVAKQKGLVS 442

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            +     ++DM  +   +D+A ++  S     +   + W +++   R++ R   A+    
Sbjct: 443 YSIVANSLIDMYAKCKCIDKALEIFHSTL---EKNIVSWTSIILGLRINNRCFEALFFFR 499

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           ++I   +  +   V + +  A  G       + +   RTG+
Sbjct: 500 EMIRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGV 540



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 125/258 (48%), Gaps = 4/258 (1%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
            +  +I+ C        G ++++++       +L + ++L+ M+ +  ++  A  VF  M
Sbjct: 108 AYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRM 167

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             RN+ SW  ++  +A+     EAL+++    +    +P+ +    V+  C  +  LV G
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGV-KPDVYTFPCVLRTCGGMPNLVRG 226

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  H  V+R G E +  V +AL+ MY KCG VN +  VF+++ N   +++ +MI G  + 
Sbjct: 227 REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFEN 286

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAK 368
           G+    L LF  MI   + P+ +T   V+ AC   G    G Q H   +  ++G  P   
Sbjct: 287 GVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSI- 345

Query: 369 HYTCVVDMLGRTGRLDEA 386
            +  ++ M    G ++EA
Sbjct: 346 -HNSLIPMYSSVGLIEEA 362



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           + +AL+ M+ + G++  +  VF R+   ++ ++  ++ G AK GL   +LDL++ M+  G
Sbjct: 143 LGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG 202

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +KP+  TF  VL  C     +  G + +     +YG   D      ++ M  + G ++ A
Sbjct: 203 VKPDVYTFPCVLRTCGGMPNLVRG-REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTA 261

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSA 410
             +   +   P+   + W  ++S 
Sbjct: 262 RLVFDKM---PNRDRISWNAMISG 282


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 320/557 (57%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +HS+I+K+ F  N +  + LI+ Y +L K   A  +       +VVS+T+++AGY     
Sbjct: 495  IHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 554

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL  F++ML   +  +E      + AC+ L  L  G+QIH      GF  +L   ++
Sbjct: 555  DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 614

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            LV +Y KC +++ A   F+     + ++W +++    Q+    EAL +F   N +  D  
Sbjct: 615  LVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGID-S 673

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            N     S + A +    +  GK  H V+ ++G +    V +A++ MYAKCGS++ + K F
Sbjct: 674  NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF 733

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +S  + V++ +MI   +K+G G  +LD F++MI   ++PN VT VGVL ACSH GLVD
Sbjct: 734  LELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 793

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            +GI++ +SM  +YG+ P  +HY CVVDML R G L  A      + ++PD   L+W TLL
Sbjct: 794  KGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDA--LVWRTLL 851

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            SA  +H  ++I   A++ L+E   + +  YV LSN YA+  +W+     R +MK  G+ K
Sbjct: 852  SACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKK 911

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            EPG SW+E+++  ++FY G+       E+    ++L ++  E GYV     L+  +++ E
Sbjct: 912  EPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLL-SELQQE 970

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             ++  + +HSE+LA++FGL+S+P  + I +MKNLR+C DCHD  K +S +  R+ +VRD 
Sbjct: 971  QKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDA 1030

Query: 589  NRFHHFRNGSCSCGDFW 605
             RFHHF  G+CSC D+W
Sbjct: 1031 YRFHHFEGGACSCKDYW 1047



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 217/448 (48%), Gaps = 15/448 (3%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T   F   L  CK + SL     +H  +LK GF S+T+  N L++ Y  L     A  +F
Sbjct: 270 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIF 329

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
             M + + V+Y +L+ G    G  + A+ LF++M  + + P+  T A+++ ACS    L 
Sbjct: 330 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLF 389

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
           +G+Q+H +    GF  N  +  +L+++Y KC+D++ A   F      NVV W  ++VA+ 
Sbjct: 390 SGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYG 449

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
                  +  +FR+   +    PNQ+   S++  C  LG L  G+  H  ++++  + N 
Sbjct: 450 LLDDLRNSFRIFRQMQIE-EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V S L+DMYAK G ++ +  +  R +   VV++T+MI G  +Y     +L  F +M+ R
Sbjct: 509 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 568

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           GI+ ++V     + AC+    + EG Q + +     G   D      +V +  + G ++E
Sbjct: 569 GIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEE 627

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL----IESNQQVANAYVTL 441
           AY   +  +    G  + W  L+S  +  G  + A+    ++    I+SN     + V  
Sbjct: 628 AYLAFEQTEA---GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKA 684

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKE 469
           ++  A   + + VH++   + +TG   E
Sbjct: 685 ASETANMKQGKQVHAV---ITKTGYDSE 709



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 192/399 (48%), Gaps = 7/399 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L S   +H+   K GF SN      L+N Y +    + A   F E    NVV +  ++  
Sbjct: 388 LFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVA 447

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y  +   + +  +F++M    + PN++T+ +++K C  L DL  G+QIH+ I    FQ N
Sbjct: 448 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLN 507

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
             VCS L+DMY K   +D A  +      ++VVSWT++I  + Q     +AL  FR+   
Sbjct: 508 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM-L 566

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
               R ++  L + ++ACA L  L  G+  H     SG   +    +ALV +Y+KCG++ 
Sbjct: 567 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIE 626

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +   F +      + + +++ G  + G    +L +F  M   GI  N+ TF   + A S
Sbjct: 627 EAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAAS 686

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            +  + +G Q + ++  K G   + +    ++ M  + G + +A K    + +  +   +
Sbjct: 687 ETANMKQGKQ-VHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNE---V 742

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            W  +++A   HG    A+++ +Q+I SN  V   +VTL
Sbjct: 743 SWNAMINAYSKHGFGSEALDSFDQMIHSN--VRPNHVTL 779



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 188/365 (51%), Gaps = 10/365 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS+ILK GF +N      L++ Y+       A ++FDEM E  + ++  ++    +   
Sbjct: 90  LHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSL 149

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKAC---SMLADLITGKQIHTHIETFGFQYNLVV 165
                 LF +M+   V PNE TF+ V++AC   S+  D++  +QIH  I   G   + +V
Sbjct: 150 SGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVV--EQIHARIIYQGLGKSTIV 207

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C+ L+D+Y +   VD ARRVFD +  ++  SW ++I   ++N    EA+ +F +  Y   
Sbjct: 208 CNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDM-YVLG 266

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P  +  +SV++AC  +  L  G+  HG+V++ G   +  V +ALV +Y   GS+  ++
Sbjct: 267 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAE 326

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ +S    VTY ++I G ++ G G  +++LF  M   G++P+  T   ++ ACS  G
Sbjct: 327 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G Q L +   K G   + K    ++++  +   ++ A       +V+     +LW 
Sbjct: 387 TLFSG-QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVE---NVVLWN 442

Query: 406 TLLSA 410
            +L A
Sbjct: 443 VMLVA 447



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 159/378 (42%), Gaps = 53/378 (14%)

Query: 126 PNEFTFATVIKAC-SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           PN  T   +++ C      L  G+++H+ I   GF  N  +   L+D Y    D+DGA +
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALK 124

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC--AS 242
           VFD M  R + +W  +I   A  +   +   +F          PN+   + V+ AC   S
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRM-VNENVTPNEGTFSGVLEACRGGS 183

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           +   V  ++ H  ++  G   + +V + L+D+Y++ G V+ + +VF+ +      ++ +M
Sbjct: 184 VAFDVVEQI-HARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ---------- 352
           I G +K      ++ LF +M   GI P    F  VL AC     ++ G Q          
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 302

Query: 353 --------HLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKS 392
                    L S+Y   G +  A+H            Y  +++ L + G  ++A +L K 
Sbjct: 303 SSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 362

Query: 393 IQVD---PDGGPLLW--------GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +Q+D   PD   L          GTL S  +LH        ASN  IE    + N Y   
Sbjct: 363 MQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEG--ALLNLYAKC 420

Query: 442 SN-----TYALAGEWENV 454
           S+      Y L  E ENV
Sbjct: 421 SDIETALNYFLETEVENV 438



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 1/164 (0%)

Query: 227 RPNQHMLASVINAC-ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           RPN   L  ++  C  + G L  G+  H  +++ G + N  ++  L+D Y   G ++ + 
Sbjct: 64  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGAL 123

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ +   ++ T+  MI   A   L      LF  M++  + PN+ TF GVL AC    
Sbjct: 124 KVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGS 183

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  + ++ + +     G+         ++D+  R G +D A ++
Sbjct: 184 VAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRV 227



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+   S+  T    ++   E  ++     VH+ I K+G+ S T   N +I+ Y +   
Sbjct: 666 MNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGS 725

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              A++ F E+   N VS+ +++  Y   G    AL  F +M+ + V PN  T   V+ A
Sbjct: 726 ISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSA 785

Query: 138 CSMLADLITGKQIHTHIETFGFQYNL 163
           CS +  +  G +   + E+   +Y L
Sbjct: 786 CSHIGLVDKGIE---YFESMNTEYGL 808


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 345/593 (58%), Gaps = 4/593 (0%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           LA      +N  +  H+  H    L+    L +L  VH+ I+ SG   +   L  LI+  
Sbjct: 75  LAFQHPVTRNFDTQSHSPVH-EALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLV 133

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
                   AR+LF  +  P+   + SL+      G     +L +++ML +    + +TF 
Sbjct: 134 CTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFT 193

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +VIKAC+ L+ L  GK+IH+H+   G+  ++ V ++L+ +Y K +D+  A++VFD M  R
Sbjct: 194 SVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQR 253

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            +++W S+I  + QN    E++ +F     +S  +P+   + S++++C+ LG L  G   
Sbjct: 254 TIIAWNSLISGYDQNGLPQESIGLF-HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWL 312

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H     +G + N V+ ++L++MY +CG+V+ + +VF+ +   +VVT+T+MI G   +G G
Sbjct: 313 HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYG 372

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
           R +++LF EM + G +PN++TFV VL AC+HSGL+D+G +   SM   YG++P  +H  C
Sbjct: 373 RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC 432

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           +VDM GR G L++AY+  K   +  + GP +W ++L A R+H   D+ V+ +  ++    
Sbjct: 433 MVDMFGRAGLLNDAYQFIKKF-IPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP 491

Query: 433 QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFE 492
           +    YV LSN YALAG  + V  +R+ M R  + K+ G S +EI  +TY F  G+    
Sbjct: 492 ENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHP 551

Query: 493 RGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPK 552
           + + +   L EL  +  E GYV     L+  D+E+E R+  +  HSE+LALAFGL+   +
Sbjct: 552 QTNTIYRYLDELMCRCSESGYVPAPESLMH-DLEEEERDYALRYHSEKLALAFGLLKTNQ 610

Query: 553 GITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G TIRI+KNLR+C DCH   K IS I +R+ +VRD  RFHHF++GSCSC D+W
Sbjct: 611 GETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 326/559 (58%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+  L+ G+L  + F     ++ Y +     +AR+LF+EM   NV+++ ++M   +  G
Sbjct: 135 IHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDG 194

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P      +  +      PN  +      AC+    L  G+Q H  + T GF  ++ V +
Sbjct: 195 RPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSN 254

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           ++VD YGKC     AR VFD M  RN VSW S+IVA+AQ+    +AL ++      + + 
Sbjct: 255 AMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGAR-NTGEE 313

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P   M++SV+  CA L  L  G+  H V VRS  + N  VASALVDMY KCG V  +++V
Sbjct: 314 PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQV 373

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGL 346
           F  +   ++VT+ +MI G A  G  + +L +F+ MI S G  PN +T V V+ ACS  GL
Sbjct: 374 FLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGL 433

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
             +G +  D+M  ++G+ P  +HY CVVD+LGR G  + AY++ + + + P     +WG 
Sbjct: 434 TKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSIS--VWGA 491

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A ++HG+ ++   AS +L E + Q +  +V LSN  A AG W     +R EMK  GI
Sbjct: 492 LLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGI 551

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPGCSW+  ++  + FYA +   +R SE+ +LL +L+++M+  GY+   T     DVE
Sbjct: 552 KKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMP-DTQYSLYDVE 610

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  V  HSE+LALAFGLI IP  + IRI KNLR+C DCH  FK +S IV R+ +VR
Sbjct: 611 EEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVR 670

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH+F+   CSC D+W
Sbjct: 671 DNNRFHYFKQFECSCKDYW 689



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 182/389 (46%), Gaps = 17/389 (4%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
            F   HL+N Y +L     A         P VVS+T+ ++G     +P  AL  F  ML 
Sbjct: 45  PFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLR 104

Query: 122 NLVWPNEFTFATVIK--ACSMLADLITGKQIHTHIETFGFQYN--LVVCSSLVDMYGKCN 177
             + PN+FTF +  K  AC+       G QIH     FG+      V C+++ DMY K  
Sbjct: 105 VGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAM-DMYFKTG 163

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN--YQSRDRPNQHMLAS 235
            +  ARR+F+ M  RNV++W +++     + +    LE F+ +    ++   PN   + +
Sbjct: 164 CLGLARRLFEEMPNRNVIAWNAVMTNAVIDGR---PLETFKAYFGLREAGGMPNVVSVCA 220

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
             NACA    L  G+  HG VV  G + +  V++A+VD Y KC     +  VF+ +   +
Sbjct: 221 FFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRN 280

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHL 354
            V++ SMIV  A++G    +L ++    + G +P D     VL  C  +GL+     + L
Sbjct: 281 SVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTC--AGLLGLNFGRAL 338

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            ++  +  I  +    + +VDM G+ G +++A ++   +   P+   + W  ++      
Sbjct: 339 HAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDM---PERNLVTWNAMIGGYAHI 395

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSN 443
           G    A+   + +I S     N ++TL N
Sbjct: 396 GDAQNALAVFDAMIRSGGTSPN-HITLVN 423



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ L    ++H+  ++S   +N F  + L++ Y +    + A Q+F +M E N+
Sbjct: 323 LTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNL 382

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQI-H 151
           V++ +++ GY ++G  Q AL +F  M+      PN  T   VI ACS       G ++  
Sbjct: 383 VTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFD 442

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQN 207
           T  E FG +      + +VD+ G+    + A  +   M  R  +S W +++ A   H + 
Sbjct: 443 TMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKT 502

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             G  A E   E + Q       H+L S  N  AS GR
Sbjct: 503 ELGRIASEKLFELDPQDS---GNHVLLS--NMLASAGR 535


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 350/608 (57%), Gaps = 21/608 (3%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLIN 70
           A  + +   K S    ++ F   ++ C  L  L +   +H +    G+ S+ F  + LI+
Sbjct: 70  ALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALID 129

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
            Y +      AR+LFDE+ E NVVS+TS+++GY+   + + A+ LF++ L  LV   ++ 
Sbjct: 130 MYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFL--LVDETDYD 187

Query: 131 -------------FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
                           VI AC+ +      + +H      GF+  L V ++L+D Y KC 
Sbjct: 188 EIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCG 247

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           ++  +R+VFD M   +V SW S+I  +AQN    EA  +F +   +   R N   L++V+
Sbjct: 248 EISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVL 307

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            ACA  G L  GK  H  VV+   E N VV +++VDMY KCG V  + K F+R+   +V 
Sbjct: 308 LACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVK 367

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++T M+ G   +G G+ ++ +F EMI  GIKPN +TFV VL ACSH+GL+ EG    + M
Sbjct: 368 SWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKM 427

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             ++ + P  +HY+C+VD+LGR G L EAY L + ++V PD   ++WG+LL A R+H  V
Sbjct: 428 KCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPD--FIVWGSLLGACRIHKNV 485

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++   ++ +L + +      YV LSN YA AG W++V  +R  MK  G+ K PG S VE 
Sbjct: 486 ELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEH 545

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
           + + + F  G+    +  ++   L EL  K++E GY+   T +++ DV+ E +  ++ +H
Sbjct: 546 KGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLY-DVDVEEKGMVLRVH 604

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AFG+++   G  I+I+KNLR+C DCH   KLIS IV R+ V+RD  RFHHF++G
Sbjct: 605 SEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDG 664

Query: 598 SCSCGDFW 605
            CSCGD+W
Sbjct: 665 LCSCGDYW 672



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 206/412 (50%), Gaps = 29/412 (7%)

Query: 58  FLSNTFTLNHLINCYVRLKKTQVA-----------RQLFDEMLEP-NVVSYTSLMAGYIN 105
           F+S T + +  IN  +R+  T              R +F + ++  +V S+ S++A +  
Sbjct: 4   FVSRTLSSSTTINKCIRMHSTTTTKTTEWTKTANLRSMFGKYVDKTSVYSWNSIIADFAR 63

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    AL  F  M    + PN  TF   IK+CS L DL  GKQIH     FG+  ++ V
Sbjct: 64  SGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFV 123

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF----- 220
            S+L+DMY KC  ++ AR++FD +  RNVVSWTS+I  + QN +  EA+ +F+EF     
Sbjct: 124 ASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDE 183

Query: 221 -NYQS----RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
            +Y          +  +L  VI+ACA +      +  HG+ V+ G E    V + L+D Y
Sbjct: 184 TDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAY 243

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTF 334
           AKCG ++ S KVF+ +    V ++ S+I   A+ GL   +  LF++M+ RG ++ N VT 
Sbjct: 244 AKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTL 303

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
             VL AC+HSG +  G + +     K  +  +    T +VDM  + GR++ A K    ++
Sbjct: 304 SAVLLACAHSGALQIG-KCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK 362

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
                    W  +++   +HG    A++   ++I     +   Y+T  +  A
Sbjct: 363 RKNVKS---WTVMVAGYGMHGHGKEAMKVFYEMIRCG--IKPNYITFVSVLA 409


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 328/576 (56%), Gaps = 7/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  L  C  L +L     +H++I++S   S+      L   Y++    + AR++F+ + 
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +V+++ +++ G ++ GQ + A  +F +ML   V P+  T+  ++ AC+    L  GK+
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE 368

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH      G   ++   ++L++MY K   +  AR+VFD M  R+VVSWT+++  +A   Q
Sbjct: 369 IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQ 428

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E+   F++   Q  +  N+     V+ AC++   L  GK  H  VV++G   +  VA+
Sbjct: 429 VVESFSTFKKMLQQGVE-ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVAN 487

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY KCGSV  + +V   +S   VVT+ ++I G A+ G G  +L  F  M S  ++P
Sbjct: 488 ALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRP 547

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N  TFV V+ AC    LV+EG +   SM + YGI+P  KHY C+VD+L R G L EA  +
Sbjct: 548 NATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDV 607

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             ++   P     +WG LL+A R HG V+I  +A+ Q ++   Q A  YV+LS  YA AG
Sbjct: 608 ILTMPFKPSAA--MWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAG 665

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W +V  LR  MK  G+ KEPG SW+E+  + ++F AG+    R  E+ S L  L +++K
Sbjct: 666 MWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIK 725

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GYV   T  V  D++ E +E  V  HSE+LA+A+GLIS P    IR+ KNLR+C DCH
Sbjct: 726 SLGYV-PDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCH 784

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS I  R+ + RD +RFHHF+NG CSCGD+W
Sbjct: 785 TATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 5/360 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +++ LQ C     LA    VH  IL+ G   N + +N L+  YV       AR+LFD+  
Sbjct: 47  YVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +VVS+  +++GY + G  Q A  LF  M    + P++FTF +++ ACS  A L  G++
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  +   G   N  V ++L+ MY KC  V  ARRVFD M  R+ VSWT++  A+A++  
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 226

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E+L+ +     Q   RP++    +V++AC SL  L  GK  H  +V S    +  V++
Sbjct: 227 AQESLKTYHAM-LQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVST 285

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL  MY KCG+V  + +VF  + N  V+ + +MI G    G    +  +F+ M+   + P
Sbjct: 286 ALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAP 345

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + VT++ +L AC+  G +  G + + +   K G++ D +    +++M  + G + +A ++
Sbjct: 346 DRVTYLAILSACARPGGLACG-KEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQV 404



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 187/377 (49%), Gaps = 43/377 (11%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + + +  ++++C    DL  GKQ+H HI  FG + N+ + ++L+ +Y  C  V+ ARR+F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D    ++VVSW  +I  +A    G EA  +F     +  + P++    S+++AC+S   L
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE-PDKFTFVSILSACSSPAAL 161

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+  H  V+ +G   N  V +AL+ MYAKCGSV  + +VF+ +++   V++T++    
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-------------- 352
           A+ G  + SL  ++ M+  G++P+ +T++ VL AC     +++G Q              
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDV 281

Query: 353 ----HLDSMYRKYGIIPDAKH-YTCVVD--------MLG---RTGRLDEAYKLAKSIQ-- 394
                L  MY K G + DA+  + C+ +        M+G    +G+L+EA+ +   +   
Sbjct: 282 RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKE 341

Query: 395 -VDPDGGPLLWGTLLSASRLHGRV----DIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            V PD    L   +LSA    G +    +I   A    + S+ +  NA +   N Y+ AG
Sbjct: 342 CVAPDRVTYL--AILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALI---NMYSKAG 396

Query: 450 EWENVHSLRSEMKRTGI 466
             ++   +   M +  +
Sbjct: 397 SMKDARQVFDRMPKRDV 413



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           ++ +Q   + + +    ++ +C     L  GK  H  ++R G + N  + + L+ +Y  C
Sbjct: 33  QYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC 92

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GSVN + ++F++ SN SVV++  MI G A  GLG+ + +LF  M   G++P+  TFV +L
Sbjct: 93  GSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152

Query: 339 HACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
            ACS    ++ G + H+  M  + G+  +A     ++ M  + G + +A ++  ++    
Sbjct: 153 SACSSPAALNWGREVHVRVM--EAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRD 210

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           +   + W TL  A    G    +++  + +++  + V  + +T  N  +  G
Sbjct: 211 E---VSWTTLTGAYAESGYAQESLKTYHAMLQ--EGVRPSRITYMNVLSACG 257


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 329/579 (56%), Gaps = 37/579 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T   ++  YVR      AR +F+E+     V + ++++GY++ G    A  LF++M+
Sbjct: 227 DDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMV 286

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKC 176
              V  +EFTF +V+ AC+ +     GK +H  I      F  +  L V ++LV  Y KC
Sbjct: 287 LERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKC 346

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR----------- 225
            ++  ARR+FD M  ++VVSW +I+  + +++   +A+E+F E  Y++            
Sbjct: 347 GNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYV 406

Query: 226 -------------------DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
                               +P  +  A  I AC  LG L  GK  HG +V+ G E ++ 
Sbjct: 407 HGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNS 466

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+ MYA+CG+V  +  +F  + N   V++ +MI    ++G GR +L+LF+ M++ G
Sbjct: 467 AGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           I P+ ++F+ VL AC+HSGLVDEG ++ +SM R +GIIP   HYT ++D+LGR GR+ EA
Sbjct: 527 IYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L K++  +P   P +W  +LS  R  G +++   A++QL +   Q    Y+ LSNTY+
Sbjct: 587 RDLIKTMPFEPT--PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYS 644

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG W +   +R  M+  G+ KEPGCSW+E  ++ + F  G+       EV   L  +  
Sbjct: 645 AAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGA 704

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           KM++ GYV   T +V  D+E   +E I+  HSERLA+ FGL+++P G T+ ++KNLR+C 
Sbjct: 705 KMRKLGYV-PDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICD 763

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH     +S  V R+ VVRDV RFHHF++G CSCG++W
Sbjct: 764 DCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 79/435 (18%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LV 124
           L+  Y    +   A   FD +     + V + ++++ Y        A+ +F+ +L +  +
Sbjct: 94  LVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSL 153

Query: 125 WPNEFTFATVIKACSMLADLITG--KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG- 181
            P++++F  ++ A   L ++      Q+H  +   G    L VC++LV +Y KC   +  
Sbjct: 154 RPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEAT 213

Query: 182 --ARRVFDLMGCRNVVSWTSIIVAHAQ-------------------------------NA 208
             AR+V D M  ++ ++WT+++V + +                               + 
Sbjct: 214 RDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSG 273

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EA E+FR    + R   ++    SV++ACA++G    GK  HG ++R    F    A
Sbjct: 274 MAVEAFELFRRMVLE-RVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAA 332

Query: 269 ----SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS----------------------- 301
               +ALV  Y+KCG++  + ++F+ ++   VV++ +                       
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 302 --------MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
                   M+ G    G    +L LFN+M S  +KP D T+ G + AC   G +  G Q 
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ- 451

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
           L     + G          ++ M  R G + EA+ +     V P+   + W  ++SA   
Sbjct: 452 LHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLM---FLVMPNIDSVSWNAMISALGQ 508

Query: 414 HGRVDIAVEASNQLI 428
           HG    A+E  ++++
Sbjct: 509 HGHGREALELFDRMV 523



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 1/202 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +V   I  +  L +  + N +++ YV       A ++F+EM   N +S+  +++GY++ G
Sbjct: 350 AVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGG 409

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL LF KM    V P ++T+A  I AC  L  L  GKQ+H HI   GF+ +    +
Sbjct: 410 FAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGN 469

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+ MY +C  V  A  +F +M   + VSW ++I A  Q+  G EALE+F     +    
Sbjct: 470 ALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGI-Y 528

Query: 228 PNQHMLASVINACASLGRLVSG 249
           P++    +V+ AC   G +  G
Sbjct: 529 PDRISFLTVLTACNHSGLVDEG 550



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 144/344 (41%), Gaps = 47/344 (13%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           V  +SLV  Y   + +  A   FD +    R+ V   ++I A+A+ +    A+ +FR   
Sbjct: 89  VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVA--HGVVVRSGCEFNDVVASALVDMYAKCG 279
                RP+ +   ++++A   L  +     A  H  V++SG      V +ALV +Y KC 
Sbjct: 149 ASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCE 208

Query: 280 SVNYSD---KVFNRISNPSVVTYTSMIVGAAKYG------------LGRF---------- 314
           S   +    KV + + N   +T+T+M+VG  + G             G+F          
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISG 268

Query: 315 ---------SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGII 364
                    + +LF  M+   +  ++ TF  VL AC++ GL   G   H   +  +   +
Sbjct: 269 YVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFV 328

Query: 365 PDAKHYT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           P+A       +V    + G +  A ++  ++ +      + W T+LS       +D AVE
Sbjct: 329 PEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK---DVVSWNTILSGYVESSCLDKAVE 385

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
              ++   N+    +++ + + Y   G  E+   L ++M+   +
Sbjct: 386 VFEEMPYKNEL---SWMVMVSGYVHGGFAEDALKLFNKMRSENV 426



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 2/183 (1%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           +N +   +T A  I    E   L     +H  I++ GF  +    N LI  Y R    + 
Sbjct: 424 ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  M   + VS+ ++++     G  + AL LF +M+   ++P+  +F TV+ AC+ 
Sbjct: 484 AHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH 543

Query: 141 LADLITG-KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WT 198
              +  G +   +    FG        + L+D+ G+   +  AR +   M      S W 
Sbjct: 544 SGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWE 603

Query: 199 SII 201
           +I+
Sbjct: 604 AIL 606


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 345/593 (58%), Gaps = 4/593 (0%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           LA      +N  +  H+  H    L+    L +L  VH+ I+ SG   +   L  LI+  
Sbjct: 11  LAFQHPVTRNFDTQSHSPVH-EALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLV 69

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
                   AR+LF  +  P+   + SL+      G     +L +++ML +    + +TF 
Sbjct: 70  CTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFT 129

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +VIKAC+ L+ L  GK+IH+H+   G+  ++ V ++L+ +Y K +D+  A++VFD M  R
Sbjct: 130 SVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQR 189

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            +++W S+I  + QN    E++ +F     +S  +P+   + S++++C+ LG L  G   
Sbjct: 190 TIIAWNSLISGYDQNGLPQESIGLF-HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWL 248

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H     +G + N V+ ++L++MY +CG+V+ + +VF+ +   +VVT+T+MI G   +G G
Sbjct: 249 HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYG 308

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
           R +++LF EM + G +PN++TFV VL AC+HSGL+D+G +   SM   YG++P  +H  C
Sbjct: 309 RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC 368

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           +VDM GR G L++AY+  K   +  + GP +W ++L A R+H   D+ V+ +  ++    
Sbjct: 369 MVDMFGRAGLLNDAYQFIKKF-IPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP 427

Query: 433 QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFE 492
           +    YV LSN YALAG  + V  +R+ M R  + K+ G S +EI  +TY F  G+    
Sbjct: 428 ENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHP 487

Query: 493 RGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPK 552
           + + +   L EL  +  E GYV     L+  D+E+E R+  +  HSE+LALAFGL+   +
Sbjct: 488 QTNTIYRYLDELMCRCSESGYVPAPESLMH-DLEEEERDYALRYHSEKLALAFGLLKTNQ 546

Query: 553 GITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G TIRI+KNLR+C DCH   K IS I +R+ +VRD  RFHHF++GSCSC D+W
Sbjct: 547 GETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 327/561 (58%), Gaps = 6/561 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   +K G     F  N +I+ Y +L   +  R++FD M   ++V++ S+++G+   G
Sbjct: 191 AMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGG 250

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-NLVVC 166
           Q   A+ +F  M  + V P+  T  ++  A +   D+  G+ +H ++   G+   +++  
Sbjct: 251 QVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAG 310

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +++VDMY K + ++ A+R+FD M  R+ VSW ++I  + QN    EA+ ++         
Sbjct: 311 NAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGL 370

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P Q    SV+ A + LG L  G   H + +++G   +  V + ++D+YAKCG ++ +  
Sbjct: 371 KPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAML 430

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F +    S   + ++I G   +G G  +L LF++M   GI P+ VTFV +L ACSH+GL
Sbjct: 431 LFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGL 490

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VD+G    + M   YGI P AKHY C+VDM GR G+LD+A+   +++ + PD    +WG 
Sbjct: 491 VDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSA--IWGA 548

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+HG V++   AS  L E + +    YV +SN YA  G+W+ V  +RS ++R  +
Sbjct: 549 LLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 608

Query: 467 HKEPGCSWVEIRDQTYAFYAGNAL--FERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            K PG S +E++     FY+GN +    +  E+   L +L  K++  GYV   +  V  D
Sbjct: 609 QKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYS-FVLQD 667

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           VE++ +E+I+  HSERLA+AFG+I+ P    + I KNLR+C DCH+  K IS I ER+ +
Sbjct: 668 VEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREII 727

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD NRFHHF++G CSCGDFW
Sbjct: 728 VRDSNRFHHFKDGYCSCGDFW 748



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 205/398 (51%), Gaps = 8/398 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           F   L+  +   + A +H+  L+ G L  + F    L++ Y+R  + + A + FDEM   
Sbjct: 74  FPPLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHR 133

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +V ++ ++++G     +   A+ LF +M+   V  +  T ++V+  C +L D      +H
Sbjct: 134 DVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMH 193

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            +    G    L VC++++D+YGK   ++  R+VFD M  R++V+W SII  H Q  Q  
Sbjct: 194 LYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVA 253

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SA 270
            A+EMF      S   P+   L S+ +A A  G +  G+  H  +VR G +  D++A +A
Sbjct: 254 SAVEMFCGMR-DSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNA 312

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKP 329
           +VDMYAK   +  + ++F+ +     V++ ++I G  + GL   ++ +++ M    G+KP
Sbjct: 313 IVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKP 372

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
              TFV VL A SH G + +G + + ++  K G+  D    TCV+D+  + G+LDEA  L
Sbjct: 373 IQGTFVSVLPAYSHLGALQQGTR-MHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLL 431

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            +       G    W  ++S   +HG    A+   +Q+
Sbjct: 432 FEQTPRRSTGP---WNAVISGVGVHGHGAKALSLFSQM 466


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 324/560 (57%), Gaps = 6/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K G     F  N LI+ Y +L   + A+ +F  M   ++V++ S+++G    GQ
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-LVVCS 167
              AL +FQ M G+ V P+  T  ++  A +   D  + K +H ++   G+  + ++  +
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           ++VDMY K ++++ A+R+FD M  ++ VSW ++I  + QN   +EA+E +         +
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK 370

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             Q    SV+ A + LG L  G   H + ++ G   +  V + L+D+YAKCG +  +  +
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLL 430

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F ++   S   + ++I G   +G G  +L LF+ M   GIKP+ VTFV +L ACSH+GLV
Sbjct: 431 FEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLV 490

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           D+G    D M   Y I+P AKHY C+ DMLGR G+LDEA+   +++ + PD    +WG L
Sbjct: 491 DQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSA--VWGAL 548

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+HG V++   AS  L E + +    YV +SN YA  G+W+ V  +RS ++R  + 
Sbjct: 549 LGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQ 608

Query: 468 KEPGCSWVEIRDQTYAFYAGNAL--FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           K PG S +E++     FY+GN      +  E+ + LR L  K++  GYV   +  V  DV
Sbjct: 609 KTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYS-FVLQDV 667

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ED+ +E I+  HSERLA+AFG+I+ P    + I KNLR+C DCH+  K IS I ER+ +V
Sbjct: 668 EDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIV 727

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHHF++G CSCGDFW
Sbjct: 728 RDSNRFHHFKDGHCSCGDFW 747



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 200/374 (53%), Gaps = 8/374 (2%)

Query: 45  SLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           S A +H+  L+ G +  + FT   L++ Y+R  +   A ++FDEM E +V ++ ++++G 
Sbjct: 85  SAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGL 144

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
               +   A+ LF +M+G  V  +  T ++V+  C +L D +    +H +    G    L
Sbjct: 145 CRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKEL 204

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            VC++L+D+YGK   ++ A+ VF  M CR++V+W SII    Q  Q   AL+MF+     
Sbjct: 205 FVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMR-G 263

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVN 282
           S   P+   L S+ +A A  G   S K  H  V+R G + +D++A +A+VDMYAK  ++ 
Sbjct: 264 SGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIE 323

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHAC 341
            + ++F+ +     V++ ++I G  + GL   +++ +  M    G+K    TFV VL A 
Sbjct: 324 AAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAY 383

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH G + +G++ + ++  K G+  D    TC++D+  + G+L EA  L + +     G  
Sbjct: 384 SHLGALQQGMR-MHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP- 441

Query: 402 LLWGTLLSASRLHG 415
             W  ++S   +HG
Sbjct: 442 --WNAIISGLGVHG 453


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 349/609 (57%), Gaps = 8/609 (1%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M   L++N  F+ A  +           T+  F   ++ C  L S+     +H   LK G
Sbjct: 12  MISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFG 71

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
             S  F  ++L + Y +      A ++F+EM   + VS+T+++ GY  +G+ + ALL F+
Sbjct: 72  IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFK 131

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           KM+   V  ++    + + AC  L     G+ +H+ +   GF+ ++ V ++L DMY K  
Sbjct: 132 KMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAG 191

Query: 178 DVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
           D++ A  VF +   CRNVVS+T +I  + +  Q  + L +F E   Q  + PN+   +S+
Sbjct: 192 DMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE-PNEFTFSSL 250

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           I ACA+   L  G   H  V++   + +  V+S LVDMY KCG +  + + F+ I +P+ 
Sbjct: 251 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE 310

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           + + S++    ++GLG+ ++ +F  M+ RG+KPN +TF+ +L  CSH+GLV+EG+ +  S
Sbjct: 311 IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 370

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M + YG++P  +HY+CV+D+LGR GRL EA +    +  +P+     W + L A R+HG 
Sbjct: 371 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA--FGWCSFLGACRIHGD 428

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            ++   A+ +L++   + + A V LSN YA   +WE+V S+R  M+   + K PG SWV+
Sbjct: 429 KEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVD 488

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           +  +T+ F A +    R S +   L  L  ++K  GYV  +T  V +D++D  +E+++  
Sbjct: 489 VGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV-PRTDSVPLDMDDSMKEKLLHR 547

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSER+A+AF LIS+P G  I + KNLR+C DCH   K IS +  R  +VRD +RFHHF +
Sbjct: 548 HSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTD 607

Query: 597 GSCSCGDFW 605
           GSCSCGD+W
Sbjct: 608 GSCSCGDYW 616



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 32/229 (13%)

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  RN+VSWT++I   +QN++  EA+  F        + P Q   +S I ACASLG +  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI-CGEVPTQFAFSSAIRACASLGSIEM 59

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  H + ++ G      V S L DMY+KCG++  + KVF  +     V++T+MI G +K
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQH---- 353
            G    +L  F +MI   +  +       L AC            HS +V  G +     
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 354 ---LDSMYRKYGIIPDAKH-------------YTCVVDMLGRTGRLDEA 386
              L  MY K G +  A +             YTC++D    T ++++ 
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 228


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 326/546 (59%), Gaps = 13/546 (2%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L+  Y R      AR  FD +  P+VVS+ ++ A Y+   +P+ AL+LF++ML   V P+
Sbjct: 261 LLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPS 320

Query: 128 EFTFATVIKACSMLADLIT---GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
             TF T + AC+          GK+I + +E  G + +  V ++ ++MY KC  +  AR 
Sbjct: 321 VATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARA 380

Query: 185 VFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           VF+ +    R+ ++W S++ A+  +  G EA E+F+    +   +PN+    +V++A  S
Sbjct: 381 VFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 440

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVTYT 300
              +  G+  H  VV +G E + V+ +AL++MYAKCGS++ +  +F++ S+    V+ +T
Sbjct: 441 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 500

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           S++ G A+YG    +L LF  M  +G++PN +TF+  L AC+H G +++G + L  M   
Sbjct: 501 SLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPD 560

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           +GI+P +KH++C+VD+LGR GRLDEA KL  ++ Q D     + W  LL A +    ++ 
Sbjct: 561 HGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADV----ITWMALLDACKNSKELER 616

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
               + ++++ + +VA++Y+ L++ YA AG W    ++R  M   GI  +PGCS VE+  
Sbjct: 617 GERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQ 676

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + ++F AG+    +  E+   L  L   +K  GYV   TGLV  DV  E +E ++  HSE
Sbjct: 677 ELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVA-DTGLVLHDVSQEHKERLLMRHSE 735

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL+S P G  +R++KNLR+C DCH   KLIS +  RD ++RD +R+HHF +G+C
Sbjct: 736 KLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTC 795

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 796 SCGDYW 801



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V PN      ++ ACS L +L  G++IH+ I    F+ N V+ ++L+ MY KC  +  A+
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 184 RVFDLM---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
           + FD +     R+VV+W ++I A  +N    EAL++FR+ ++     PN     SV+++C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 241 ASLG--RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN----P 294
              G   L   +  HG +V +G E    V +ALVD Y K GS++ + +VF R S+     
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           S+VT ++MI    + G  + SL LF  M   G KP+ VT V VL+ACS
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS 230



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 212/455 (46%), Gaps = 28/455 (6%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           R +CH     I  +  C  L +LA+   +HS+I    F  N+   N LI+ Y +      
Sbjct: 4   RPNCHA---LIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLID 60

Query: 81  ARQLFDEMLEP---NVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIK 136
           A+Q FD +      +VV++ ++++ ++  G  + AL LF+ M  +    PN  TF +V+ 
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLD 120

Query: 137 AC--SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF----DLMG 190
           +C  + L  L   + IH  I   G +    V ++LVD YGK   +D A  VF    D   
Sbjct: 121 SCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP 180

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL--GRLVS 248
             ++V+ +++I A  QN    E+L +F   N +   +P+   L SV+NAC+ L  G   +
Sbjct: 181 STSLVTCSAMISACWQNGWPQESLRLFYAMNLEG-TKPSGVTLVSVLNACSMLPVGSATA 239

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
             +   + V S    N V+ + L+  YA+   ++ +   F+ I +P VV++ +M     +
Sbjct: 240 FVLEQAMEVVSATRDN-VLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQ 298

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-SHSGLVDEGI-QHLDSMYRKYGIIPD 366
           +   R +L LF  M+  G++P+  TF+  L AC ++       I + + S+  + G+  D
Sbjct: 299 HHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGD 358

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE---- 422
                  ++M  + G L +A  + + I        + W ++L+A   HG    A E    
Sbjct: 359 TAVANATLNMYAKCGSLADARAVFERIS-PTRRDCITWNSMLAAYGHHGLGKEAFELFQA 417

Query: 423 -ASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
             + +L++ N+    A +  S +     +   +H+
Sbjct: 418 MEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHA 452



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 30  KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  L       S+A    +H+ ++ +GF S+T   N L+N Y +      A+ +FD
Sbjct: 428 KVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFD 487

Query: 87  EML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           +    + +V+++TSL+AGY   GQ + AL LF  M    V PN  TF + + AC+    L
Sbjct: 488 KSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKL 547

Query: 145 ITGKQIHTHIETFGFQYNLVVCSS----LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             G ++   +      + +V  S     +VD+ G+C  +D A ++ +     +V++W ++
Sbjct: 548 EQGCEL---LSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMAL 604

Query: 201 IVA 203
           + A
Sbjct: 605 LDA 607


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/629 (34%), Positives = 342/629 (54%), Gaps = 41/629 (6%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQ--QLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           +++  L + +  S    KAH +    L  C  +  L   HS+I++ G  ++   +  +I 
Sbjct: 1   MSSLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIK 60

Query: 71  CYVRLKKT---QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
            +  + K+     A ++FD++  P+   Y ++  GY+     +  + ++ +ML   V PN
Sbjct: 61  -FCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPN 119

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGF---------------------------- 159
           +FT+  +I+AC +   +  GKQIH H+  FGF                            
Sbjct: 120 KFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFD 179

Query: 160 ---QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
              Q ++V  +SL+  Y +   VD AR VF+LM  RN VSW ++I A+ Q+ + HEA  +
Sbjct: 180 NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFAL 239

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F     ++    ++ + AS+++AC  LG L  GK  HG + +SG E +  +A+ ++DMY 
Sbjct: 240 FDRMRLENVVL-DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYC 298

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG +  + +VFN +    + ++  MI G A +G G  +++LF EM    + P+ +TFV 
Sbjct: 299 KCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVN 358

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL AC+HSGLV+EG  +   M    G+ P  +H+ C+VD+LGR G L+EA KL   + V+
Sbjct: 359 VLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN 418

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           PD G L  G L+ A R+HG  ++  +   ++IE     +  YV L+N YA AG WE+V  
Sbjct: 419 PDAGVL--GALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAK 476

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG 516
           +R  M   G+ K PG S +E       F AG     +  E+ + L E+   ++  GYV  
Sbjct: 477 VRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPD 536

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
             G V  D+++E +E  +  HSE+LA+AFGL+    G T+RI KNLR+CRDCH   KLIS
Sbjct: 537 TDG-VLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLIS 595

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            + +R+ ++RD NRFHHFR G CSC D+W
Sbjct: 596 KVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 330/572 (57%), Gaps = 36/572 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N +I  Y++ +    A  LF+ M   N +S+  ++AGY   G+ + AL+  Q + 
Sbjct: 351 NVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALH 410

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+  +  +   ACS +  L TGKQ+H+     G Q+N  VC++L+ +YGK   + 
Sbjct: 411 RKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIG 470

Query: 181 GARRVFDLMGCRN-------------------------------VVSWTSIIVAHAQNAQ 209
             R++FD M  ++                               VVSWT+II A AQ  Q
Sbjct: 471 SVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQ 530

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G+EA+E+FR   ++ R+ PN  +L  ++    +LG    G+  H + ++ G +   VVA+
Sbjct: 531 GNEAVEIFRSMLHE-RELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVAN 589

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALV MY KC S + S KVF+ +    + T+ ++I G A++GLGR ++ ++  M+S G+ P
Sbjct: 590 ALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLP 648

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N+VTFVG+LHACSHSGLVDEG Q   SM   YG+ P  +HY C+VD+LGR G +  A   
Sbjct: 649 NEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHF 708

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
              + ++PD   ++W  LL A ++H  V+I   A+ +L       A  YV LSN Y+  G
Sbjct: 709 IYDMPIEPDS--VIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQG 766

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W+ V  +R  MK  G++K+PGCSW++I+++ ++F  G+   E+   + + L EL   +K
Sbjct: 767 MWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLK 826

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GYV   T  V  D+++E +E  +  HSE+LA+A+GL+  PKG+ I+IMKNLR+C DCH
Sbjct: 827 ATGYV-PDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCH 885

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
              K +S + +R+  VRD NRFHHFRNGSCSC
Sbjct: 886 TFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 175/390 (44%), Gaps = 43/390 (11%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           + N ++  Y   +  + AR LF+ M E N VS+T +++GY+ + Q   A  +F+ ML   
Sbjct: 159 SWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEG 218

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK-CNDVDGA 182
           + P +    +V+ A   L      + IH  +   GF+ ++VV +++++ Y K  N +D A
Sbjct: 219 MTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSA 278

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
            + F+ M  RN  +W++II A +Q  +  +A  +++    +S   P++    S++   A 
Sbjct: 279 VKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS--VPSR---TSMLTGLAR 333

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            GR+   K+    +     E N V  +A++  Y +   V+ ++ +FNR+   + +++  M
Sbjct: 334 YGRIDDAKILFDQI----HEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGM 389

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGI 351
           I G A+ G    +L     +  +G+ P+  +      ACS           HS  V  G 
Sbjct: 390 IAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGC 449

Query: 352 QH-------LDSMYRKYG------------IIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           Q        L ++Y KY              + D   Y   +  L +    DEA  +  +
Sbjct: 450 QFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNN 509

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           +   P    + W T++SA     + + AVE
Sbjct: 510 M---PSPDVVSWTTIISACAQADQGNEAVE 536



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 168/465 (36%), Gaps = 128/465 (27%)

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           RL +   AR++FD M   +++++ S++  Y N G P                        
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPD----------------------- 81

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
              A   LAD I+G              NL   + L+  Y +   V  ARRVFD MG RN
Sbjct: 82  ---AGRSLADAISGG-------------NLRTGTILLSGYARAGRVRDARRVFDGMGVRN 125

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
            V+W +++  + QN     A ++F      SRD              +S   +++G    
Sbjct: 126 TVAWNAMVTCYVQNGDITLARKLFDAM--PSRD-------------VSSWNTMLTG---- 166

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
                                Y     +  +  +F R+   + V++T MI G        
Sbjct: 167 ---------------------YCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHG 205

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSH---SGLVD---------------------- 348
            + D+F  M+  G+ P     V VL A  H    G+++                      
Sbjct: 206 RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAIL 265

Query: 349 ----EGIQHLDSMYRKYGIIPDAKHYT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
               + +  LDS  + +  +     YT   ++  L + GR+D+A+ +    Q DP     
Sbjct: 266 NGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAV---YQRDPLKSVP 322

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
              ++L+    +GR+D A    +Q+ E N    NA +T      +  E E++ + R   +
Sbjct: 323 SRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFN-RMPFR 381

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            T        SW           AG A   R  + L  L+ L RK
Sbjct: 382 NT-------ISWA-------GMIAGYARNGRSEQALVSLQALHRK 412


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 332/540 (61%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + A+++FDE+   +VVS+ ++++GY   G  + AL LF++M+   V P+
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+    +  G+Q+H+ I+  GF  NL + ++L+D+Y KC  V+ A  +F+
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            + C++VVSW ++I  +       EAL +F+E   +S + PN   + S++ ACA LG + 
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNDVTIVSILPACAHLGAID 316

Query: 248 SGKVAHGVVVRSGCEFNDVVA--SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   +  +  +  ++L+DMYAKCG +  + +VFN + + S+ ++ +MI G
Sbjct: 317 IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 376

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G      DLF+ M   GI+P+D+TFVG+L ACSHSG +D G     SM + Y I P
Sbjct: 377 FAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITP 436

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG +G   EA ++ K++ ++PDG  ++W +LL A R HG +++A   + 
Sbjct: 437 KLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDG--VIWCSLLKACRRHGNLELAESFAR 494

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            L++   +   +YV LSN YA AGEW+ V  +R+ +   G+ K PGCS +EI  + + F 
Sbjct: 495 NLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFI 554

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+ L  R  E+  +L E+E  ++E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 555 VGDKLHPRNREIYGMLEEMEALLEEAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIAF 613

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS   G  + I+KNLR+CR+CH+  KL+S I +R+ + RD  RFHHFR+G CSC DFW
Sbjct: 614 GLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 184/372 (49%), Gaps = 40/372 (10%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  + EPN + + +++ GY     P  AL L+  M+   + PN +TF  ++K+C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMY---GKCND------------------- 178
                 G+QIH H+   G++ +L V +SL+ MY   G+  D                   
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 179 ---------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
                    +  A+ +FD +  ++VVSW ++I  +A+     EALE+F+E   ++  RP+
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM-MKTNVRPD 197

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  + +V++ACA    +  G+  H  +   G   N  + +AL+D+Y+KCG V  +  +F 
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +S   VV++ ++I G     L + +L LF EM+  G  PNDVT V +L AC+H G +D 
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 350 GIQ---HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           G     ++D   +     P  +  T ++DM  + G ++ A+++  S+          W  
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSS---WNA 372

Query: 407 LLSASRLHGRVD 418
           ++    +HGR +
Sbjct: 373 MIFGFAMHGRAN 384



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS I   GF SN   +N LI+ Y +  + + A  LF+ +   +VVS+ +L+ GY +M  
Sbjct: 220 VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNL 279

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET--FGFQYNLVVC 166
            + ALLLFQ+ML +   PN+ T  +++ AC+ L  +  G+ IH +I+           + 
Sbjct: 280 YKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR 339

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+DMY KC D++ A +VF+ M  +++ SW ++I   A + + +   ++F     ++  
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMR-KNGI 398

Query: 227 RPNQHMLASVINACASLGRLVSGK 250
            P+      +++AC+  G+L  G+
Sbjct: 399 EPDDITFVGLLSACSHSGKLDLGR 422



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 9/190 (4%)

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+  VF  I  P+ + + +M+ G A       +L L+  MIS G+ PN  TF  +L +C+
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGP 401
            S   +EG Q +     K G  PD   +T ++ M  + GRL++A+K+  +S   D     
Sbjct: 78  KSKAFEEG-QQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD----V 132

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           + +  L++     G +  A E  +++   +    NA ++    YA  G ++    L  EM
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMIS---GYAETGSYKEALELFKEM 189

Query: 462 KRTGIHKEPG 471
            +T +  + G
Sbjct: 190 MKTNVRPDEG 199


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/666 (33%), Positives = 358/666 (53%), Gaps = 76/666 (11%)

Query: 4    SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTF 63
            + TRN    LA        +R+  ++    I    +C  L     ++  + +    + T 
Sbjct: 405  AYTRNGSLDLAMHFFETMPERNE-YSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKT- 462

Query: 64   TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--G 121
                ++  Y ++ + Q AR +FDE+L PNVV++ +++AGY   G  + A  LFQKM    
Sbjct: 463  ---AMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKN 519

Query: 122  NLVW-----------------------------PNEFTFATVIKACSMLADLITGKQIHT 152
            +  W                             P++ +F + + AC+ + D+  G+ IH+
Sbjct: 520  SASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHS 579

Query: 153  HIETFGFQYNLVVCSSLVDMYGKCNDV-------------------------------DG 181
                 G Q+N  V + L+ MY KC +V                               D 
Sbjct: 580  LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDD 639

Query: 182  ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
            AR VF+ M  R+VVSWT+II A+ Q   G  AL++F +   +   +PNQ  + S+++AC 
Sbjct: 640  ARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGI-KPNQLTVTSLLSACG 698

Query: 242  SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK--VFNRISNPSVVTY 299
            +LG +  G+  H ++ + G +    V ++L+ MY KCG   Y D   VF  +    ++T+
Sbjct: 699  NLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG---YEDGFCVFEEMPEHDLITW 755

Query: 300  TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
             +++VG A+ GLG+ ++ +F +M   GI P+ ++F+GVL ACSH+GLVDEG  H +SM +
Sbjct: 756  NAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQ 815

Query: 360  KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            KYGI+P   HYTC+VD+LGR G L EA  L +++ V PD   ++W  LL A R+H  V++
Sbjct: 816  KYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDS--VIWEALLGACRIHRNVEL 873

Query: 420  AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
                + +L +  +  +  YV LSN +A  G W+ V  +R  MK  G+ KEPG SW+++++
Sbjct: 874  GQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKN 933

Query: 480  QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            + + F  G+   ++  E+ S L+E     +  GY+   T  V  DVE+E ++  +  HSE
Sbjct: 934  KLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYM-PDTNFVLHDVEEEQKQNELLYHSE 992

Query: 540  RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
            +LA+ FG++S P G  I+I+KNLR+C DCH   K +S +  R  ++RD NRFHHFR+GSC
Sbjct: 993  KLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSC 1052

Query: 600  SCGDFW 605
            SCGD+W
Sbjct: 1053 SCGDYW 1058



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 165/338 (48%), Gaps = 40/338 (11%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           + S+    +K+G+  +    + ++N Y R     +A   F+ M E N  S+T+++A +  
Sbjct: 380 IGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ 439

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G+   A+ L++++    V     T   ++ A + +  +   + I   I       N+V 
Sbjct: 440 CGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVA 491

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++++  Y +   +  A+ +F  M  +N  SW ++I    QN +  EALE+  E  ++S 
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIEL-HRSG 550

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV---- 281
             P+     S ++ACA++G +  G+V H + +++GC+FN  V + L+ MYAKCG+V    
Sbjct: 551 SVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGS 610

Query: 282 -----------------------NY----SDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
                                  NY    +  VF ++    VV++T++I    + G G  
Sbjct: 611 HVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEV 670

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           +LDLF +M++RGIKPN +T   +L AC + G +  G Q
Sbjct: 671 ALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ 708



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 176/351 (50%), Gaps = 15/351 (4%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N ++  Y    +   AR+LFD+M E N VS+  +++GY+++     A  +F KM 
Sbjct: 294 NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMC 353

Query: 121 GNLVWPNEFTFATVIKACSMLADL-ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             +  P++  F  V+ A + L DL + G      I+T G++ ++VV S++++ Y +   +
Sbjct: 354 RTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKT-GYEGDVVVGSAILNAYTRNGSL 412

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           D A   F+ M  RN  SWT++I A AQ  +  +A++++     Q+          +++ A
Sbjct: 413 DLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATK-----TAMMTA 467

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            A +GR+   ++    ++      N V  +A++  Y + G +  +  +F ++   +  ++
Sbjct: 468 YAQVGRIQKARLIFDEILNP----NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASW 523

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G  +    R +L+L  E+   G  P+D +F   L AC++ G V+ G + + S+  
Sbjct: 524 AAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAI 582

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           K G   ++     ++ M  + G +++   + ++I+V      + W +L+S 
Sbjct: 583 KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK---DTVSWNSLISG 630



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 181/414 (43%), Gaps = 63/414 (15%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK- 76
           LT Q+K ++ H  A ++  LQ+ K +I          KSG  +      HL  C  R++ 
Sbjct: 131 LTSQSKLNTRH--ARWMDYLQQFKFVIRH--------KSGAKNKETPQTHLFQCNTRIQE 180

Query: 77  -----KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
                + + AR++F+EM++ +VVS+ S++ GY   G+   A LLF   +G     N  T+
Sbjct: 181 LGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK----NIRTW 236

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
             ++   +    +   +++   +     + N+V  ++++  Y +  D+  AR++FD M  
Sbjct: 237 TILLTGYAKEGRIEEAREVFESMT----ERNVVSWNAMISGYVQNGDLKNARKLFDEMPE 292

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFN--------------------YQSRD----- 226
           +NV SW S++  +    +  EA E+F +                      +++ D     
Sbjct: 293 KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM 352

Query: 227 -----RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                RP+Q +   V++A   L  L        + +++G E + VV SA+++ Y + GS+
Sbjct: 353 CRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + +   F  +   +  ++T+MI   A+ G     LD   ++  R  +    T   ++ A 
Sbjct: 413 DLAMHFFETMPERNEYSWTTMIAAFAQCG----RLDDAIQLYERVPEQTVATKTAMMTAY 468

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           +  G + +     D +       P+   +  ++    + G L EA  L + + V
Sbjct: 469 AQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV 517



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 142/313 (45%), Gaps = 31/313 (9%)

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           Q +L  C++ +   G+   V+ ARRVF+ M  R+VVSW S+I  ++QN +  EA  +F  
Sbjct: 168 QTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDA 227

Query: 220 F---------------NYQSRDRPNQHMLASVINA-CASLGRLVSGKVAHGVVVRSGCEF 263
           F                 + R    + +  S+      S   ++SG V +G +  +   F
Sbjct: 228 FVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLF 287

Query: 264 NDV----VAS--ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           +++    VAS  ++V  Y  C  ++ + ++F+++   + V++  MI G         + D
Sbjct: 288 DEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWD 347

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVD-EGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           +F +M     +P+   FV VL A   +GL D E I  L  +  K G   D    + +++ 
Sbjct: 348 VFVKMCRTVARPDQSIFVVVLSAI--TGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNA 405

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             R G LD A    +++   P+     W T+++A    GR+D A++   ++ E       
Sbjct: 406 YTRNGSLDLAMHFFETM---PERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKT 462

Query: 437 AYVTLSNTYALAG 449
           A +T    YA  G
Sbjct: 463 AMMT---AYAQVG 472


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 349/609 (57%), Gaps = 8/609 (1%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M   L++N  F+ A  +           T+  F   ++ C  L S+     +H   LK G
Sbjct: 77  MISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFG 136

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
             S  F  ++L + Y +      A ++F+EM   + VS+T+++ GY  +G+ + ALL F+
Sbjct: 137 IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFK 196

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           KM+   V  ++    + + AC  L     G+ +H+ +   GF+ ++ V ++L DMY K  
Sbjct: 197 KMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAG 256

Query: 178 DVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
           D++ A  VF +   CRNVVS+T +I  + +  Q  + L +F E   Q  + PN+   +S+
Sbjct: 257 DMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE-PNEFTFSSL 315

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           I ACA+   L  G   H  V++   + +  V+S LVDMY KCG +  + + F+ I +P+ 
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE 375

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           + + S++    ++GLG+ ++ +F  M+ RG+KPN +TF+ +L  CSH+GLV+EG+ +  S
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 435

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M + YG++P  +HY+CV+D+LGR GRL EA +    +  +P+     W + L A R+HG 
Sbjct: 436 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA--FGWCSFLGACRIHGD 493

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            ++   A+ +L++   + + A V LSN YA   +WE+V S+R  M+   + K PG SWV+
Sbjct: 494 KEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVD 553

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           +  +T+ F A +    R S +   L  L  ++K  GYV  +T  V +D++D  +E+++  
Sbjct: 554 VGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV-PRTDSVPLDMDDSMKEKLLHR 612

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSER+A+AF LIS+P G  I + KNLR+C DCH   K IS +  R  +VRD +RFHHF +
Sbjct: 613 HSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTD 672

Query: 597 GSCSCGDFW 605
           GSCSCGD+W
Sbjct: 673 GSCSCGDYW 681



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 209/400 (52%), Gaps = 6/400 (1%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           AH IQ   + K L     +H+ ++ +G+   TF  NHL+N Y +  +   A +LFD M +
Sbjct: 9   AHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N+VS+T++++G     +   A+  F  M      P +F F++ I+AC+ L  +  GKQ+
Sbjct: 69  RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H     FG    L V S+L DMY KC  +  A +VF+ M C++ VSWT++I  +++  + 
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 188

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            EAL  F++         +QH+L S + AC +L     G+  H  VV+ G E +  V +A
Sbjct: 189 EEALLAFKKM-IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 271 LVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           L DMY+K G +  +  VF   S   +VV+YT +I G  +       L +F E+  +GI+P
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N+ TF  ++ AC++   +++G Q L +   K     D    + +VDM G+ G L++A + 
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQA 366

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
              I    D   + W +L+S    HG    A++   ++++
Sbjct: 367 FDEIG---DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVD 403



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 99/201 (49%), Gaps = 4/201 (1%)

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + LA VI   A   RL  GK  H +++ +G      + + LV+MY+KCG ++++ K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   ++V++T+MI G ++      ++  F  M   G  P    F   + AC+  G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q +  +  K+GI  +    + + DM  + G + +A K+ + +   P    + W  ++
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM---PCKDEVSWTAMI 179

Query: 409 SASRLHGRVDIAVEASNQLIE 429
                 G  + A+ A  ++I+
Sbjct: 180 DGYSKIGEFEEALLAFKKMID 200


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 343/600 (57%), Gaps = 31/600 (5%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C HL  L +   +H+  L++   + N+F  + L++ Y    + +  R +FD +
Sbjct: 219 FASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV 278

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITG 147
           L+  +  + +++AGY      + AL+LF +M     ++ N  T ++++ A      +   
Sbjct: 279 LDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK 338

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           + IH ++   G + N  + ++L+DMY +  D+  ++R+FD M  R++VSW +II ++   
Sbjct: 339 EGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVIC 398

Query: 208 AQGHEALEMFREFN---------------YQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            +  +AL +  E                  Q   +PN   L +V+  CASL  L  GK  
Sbjct: 399 GRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEI 458

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H   +R+       V SALVDMYAKCG +N + +VF+++   +V+T+  +I+    +G G
Sbjct: 459 HAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKG 518

Query: 313 RFSLDLFNEMISRG-----IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           + SL+LF +M++ G     +KP +VTF+ +  +CSHSG+VDEG+     M  ++GI P  
Sbjct: 519 KESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAP 578

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL--WGTLLSASRLHGRVDIAVEASN 425
            HY C+VD++GR G+++EAY L  ++   P G   +  W +LL A R++  ++I   A+ 
Sbjct: 579 DHYACIVDLVGRAGKVEEAYGLVNTM---PSGFDKVGAWSSLLGACRIYHNIEIGEIAAE 635

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            L++    VA+ YV LSN Y+ AG W+   +LR  MK  G+ KEPGCSW+E  D+ + F 
Sbjct: 636 NLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFL 695

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           AG+    +  ++   L  L  ++K+ GYV   T  V  D+++E +E I+  HSE+LA+AF
Sbjct: 696 AGDLSHPQSEKLHDFLETLSERLKKEGYVP-DTACVLHDIDEEEKETILCGHSEKLAIAF 754

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G+++ P G TIR+ KNLR+C DCH   K IS I +R+ ++RD  RFHHF++G+CSCGD+W
Sbjct: 755 GILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 184/384 (47%), Gaps = 21/384 (5%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           TF+ N L+  Y +L +   A+ L     + ++V++ S+++ +    +   AL+  + M+ 
Sbjct: 150 TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVL 209

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVD 180
             V P+  TFA+V+ ACS L  L TGK+IH + + T     N  V S+LVDMY  C  V+
Sbjct: 210 EGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVE 269

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
             R VFD +  R +  W ++I  +AQ+    +AL +F E    +    N   ++S++ A 
Sbjct: 270 SGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAY 329

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
                +   +  HG V++ G E N  + +AL+DMY++ G +  S ++F+ + +  +V++ 
Sbjct: 330 VRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWN 389

Query: 301 SMIVGAAKYGLGRFSLDLFNEM----------------ISRGIKPNDVTFVGVLHACSHS 344
           ++I      G    +L L +EM                     KPN +T + VL  C+  
Sbjct: 390 TIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASL 449

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
             + +G + + +   +  +       + +VDM  + G L+ A ++   +   P    + W
Sbjct: 450 SALAKG-KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQM---PIRNVITW 505

Query: 405 GTLLSASRLHGRVDIAVEASNQLI 428
             ++ A  +HG+   ++E    ++
Sbjct: 506 NVIIMAYGMHGKGKESLELFEDMV 529



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 182/384 (47%), Gaps = 31/384 (8%)

Query: 49  VHSEILKSGF--LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           +H+ + K G+   S+    N L+N Y +      A ++FD + E + VS+ S+++     
Sbjct: 32  IHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRF 91

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD---LITGKQIH------THIETF 157
            + ++A+  F+ ML     P+ FT  ++  ACS L     L  GKQIH       H  TF
Sbjct: 92  EEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTF 151

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
                    ++L+ MY K   +D A+ +  L   R++V+W S+I + +QN +  EAL MF
Sbjct: 152 S-------NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEAL-MF 203

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF-NDVVASALVDMYA 276
                    +P+    ASV+ AC+ L  L +GK  H   +R+     N  V SALVDMY 
Sbjct: 204 LRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYC 263

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFV 335
            CG V     VF+ + +  +  + +MI G A+      +L LF EM  + G+  N  T  
Sbjct: 264 NCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMS 323

Query: 336 GVLHACSHSGLVDEGIQHLDSMYR---KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
            ++ A        EGI   + ++    K G+  +      ++DM  R G +  + ++  S
Sbjct: 324 SIVPAYVRC----EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDS 379

Query: 393 IQVDPDGGPLLWGTLLSASRLHGR 416
           ++   D   + W T++++  + GR
Sbjct: 380 ME---DRDIVSWNTIITSYVICGR 400



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 153/297 (51%), Gaps = 10/297 (3%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--NLVVCSSLVDMYGKC 176
           M+G+   P+ F F  V+KA + + +L  GKQIH H+  FG+    ++ + ++LV+MYGKC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             +  A +VFD +  R+ VSW SII A  +  +   A++ FR    +  + P+   L S+
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFE-PSSFTLVSM 119

Query: 237 INACASLGR---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
             AC++L +   L  GK  HG   R G  +     +AL+ MYAK G ++ +  +     +
Sbjct: 120 ALACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFED 178

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
             +VT+ SMI   ++      +L     M+  G+KP+ VTF  VL ACSH  L+  G + 
Sbjct: 179 RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
                R   +I ++   + +VDM    G+++    +  S+ +D   G  LW  +++ 
Sbjct: 239 HAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV-LDRKIG--LWNAMIAG 292



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 22/306 (7%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           S+  T +  +     C+ +     +H  ++K G  +N +  N LI+ Y R+   + ++++
Sbjct: 317 SNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRI 376

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML---------GNL-------VWPNE 128
           FD M + ++VS+ +++  Y+  G+   ALLL  +M          G+          PN 
Sbjct: 377 FDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNS 436

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            T  TV+  C+ L+ L  GK+IH +         + V S+LVDMY KC  ++ ARRVFD 
Sbjct: 437 ITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQ 496

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD----RPNQHMLASVINACASLG 244
           M  RNV++W  II+A+  + +G E+LE+F +   +       +P +    ++  +C+  G
Sbjct: 497 MPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSG 556

Query: 245 RLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSM 302
            +  G  + H +    G E      + +VD+  + G V  +  + N + S    V   S 
Sbjct: 557 MVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSS 616

Query: 303 IVGAAK 308
           ++GA +
Sbjct: 617 LLGACR 622


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 331/564 (58%), Gaps = 3/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL  L   H+ ++ +G   +   L  L+            R+LF  + +P+   + SL+ 
Sbjct: 22  HLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIK 81

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
                G    A+L +++ML + + P+ +TF +VIKAC+ L+ L  G  +H+H+   G+  
Sbjct: 82  ASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYAS 141

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  V ++L+  Y K      AR+VFD M  R++V+W S+I  + QN   +EA+E+F +  
Sbjct: 142 DSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMR 201

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            +SR  P+     SV++AC+ LG L  G   H  +V SG   N V+A++LV+M+++CG V
Sbjct: 202 -ESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDV 260

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  VF  +   +VV +T+MI G   +G G  ++++F+ M +RG+ PN VTFV VL AC
Sbjct: 261 GRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSAC 320

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +H+GL+DEG     SM ++YG++P  +H+ C+VDM GR G L+EAY+  K +  D +  P
Sbjct: 321 AHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSD-ELVP 379

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W  +L A ++H   D+ VE +  LI +  +    YV LSN YALAG  + V S+R+ M
Sbjct: 380 AVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVM 439

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
            + G+ K+ G S +++ +++Y F  G+      +E+   L EL  + K+ GY       +
Sbjct: 440 IQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAM 499

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             ++E E RE  +  HSE+LA+AFGL+    G+T+RI+KNLR+C DCH   K IS ++ R
Sbjct: 500 H-ELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNR 558

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + +VRD  RFHHFR GSCSC D+W
Sbjct: 559 EIIVRDKLRFHHFREGSCSCSDYW 582


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 318/572 (55%), Gaps = 5/572 (0%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           I    + K+L    ++H+ + +S    + F LN LI+ Y +      AR +FD+M   +V
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV 126

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T L+AGY     P  A+ L   ML     PN FTF +++KA         G+Q+H  
Sbjct: 127 VSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHAL 186

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
              + +  ++ V S+L+DMY +C  +D A  VFD +  +N VSW ++I   A+ A G   
Sbjct: 187 AVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETT 246

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L  F E              +S+ +A A +G L  G+  H  +++SG +    V + ++ 
Sbjct: 247 LMKFAEMQRNGFG-ATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLG 305

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAK GS+  + KVF+R+    +VT+ +M+   A+YGLG+ ++  F E+   GI+ N +T
Sbjct: 306 MYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQIT 365

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ VL ACSH GLV EG  + D M + Y + P+  HY   VD+LGR G L EA      +
Sbjct: 366 FLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKM 424

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P     +WG LL A R+H    +   A++ + E +       V L N YA  G+W +
Sbjct: 425 PMEPTAA--VWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWND 482

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  MK TG+ KEP CSWV+I +  + F A +    +  ++  +  E+  ++K+ GY
Sbjct: 483 AARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGY 542

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V + + ++ RE  +  HSE++ALAF LI++P G +IRIMKN+R+C DCH  FK
Sbjct: 543 VP-NTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFK 601

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S + +R+ VVRD NRFHHF  GSCSCGD+W
Sbjct: 602 YVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    + ++I AC+   +L   + IH H+       +  + +SL+ MY KC  V  AR V
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHV 117

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R+VVSWT +I  +AQN    EA+ +  +   ++R RPN     S++ A  + G 
Sbjct: 118 FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM-LRARFRPNGFTFTSLLKATGACGG 176

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  H + V+   + +  V SAL+DMYA+C  ++ +  VF+R+ + + V++ ++I G
Sbjct: 177 CSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAG 236

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
            A+   G  +L  F EM   G      T+  +  A +  G +++G
Sbjct: 237 FARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 281


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 348/609 (57%), Gaps = 8/609 (1%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M   L++N  F+ A  +           T+  F   ++ C  L S+     +H   LK G
Sbjct: 77  MISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFG 136

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
             S  F  ++L + Y +      A ++F+EM   + VS+T+++ GY  +G+ + ALL F+
Sbjct: 137 IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFK 196

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           KM+   V  ++    + + AC  L     G+ +H+ +   GF+ ++ V ++L DMY K  
Sbjct: 197 KMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAG 256

Query: 178 DVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
           D++ A  VF +   CRNVVS+T +I  + +  Q  + L +F E   Q  + PN+   +S+
Sbjct: 257 DMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE-PNEFTFSSL 315

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           I ACA+   L  G   H  V++   + +  V+S LVDMY KCG + ++ + F+ I +P+ 
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTE 375

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           + + S++    ++GLG+ ++  F  M+ RG+KPN +TF+ +L  CSH+GLV+EG+ +  S
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 435

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M + YG++P  +HY+CV+D+LGR GRL EA +    +  +P+     W + L A R+HG 
Sbjct: 436 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA--FGWCSFLGACRIHGD 493

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            ++   A+ +L++   + + A V LSN YA   +WE+V S+R  M+   + K PG SWV+
Sbjct: 494 KEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVD 553

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           +  +T+ F A +    R S +   L  L  ++K  GYV   T  V +D++D  +E+++  
Sbjct: 554 VGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYV-PXTDSVPLDMDDXMKEKLLHR 612

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSER+A+AF LIS+P G  I + KNLR+C DCH   K IS +  R  +VRD +RFHHF +
Sbjct: 613 HSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTD 672

Query: 597 GSCSCGDFW 605
           GSCSCGD+W
Sbjct: 673 GSCSCGDYW 681



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 209/400 (52%), Gaps = 6/400 (1%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           AH IQ   + K L     +H+ ++ +G+   TF  NHL+N Y +  +   A +LFD M +
Sbjct: 9   AHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N+VS+T++++G     +   A+  F  M      P +F F++ I+AC+ L  +  GKQ+
Sbjct: 69  RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H     FG    L V S+L DMY KC  +  A +VF+ M C++ VSWT++I  +++  + 
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 188

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            EAL  F++         +QH+L S + AC +L     G+  H  VV+ G E +  V +A
Sbjct: 189 EEALLAFKKM-IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 271 LVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           L DMY+K G +  +  VF   S   +VV+YT +I G  +       L +F E+  +GI+P
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N+ TF  ++ AC++   +++G Q L +   K     D    + +VDM G+ G L+ A + 
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQA 366

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
              I  DP    + W +L+S    HG    A++   ++++
Sbjct: 367 FDEIG-DPT--EIAWNSLVSVFGQHGLGKDAIKFFERMVD 403



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 99/201 (49%), Gaps = 4/201 (1%)

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + LA VI   A   RL  GK  H +++ +G      + + LV+MY+KCG ++++ K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   ++V++T+MI G ++      ++  F  M   G  P    F   + AC+  G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q +  +  K+GI  +    + + DM  + G + +A K+ + +   P    + W  ++
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM---PCKDEVSWTAMI 179

Query: 409 SASRLHGRVDIAVEASNQLIE 429
                 G  + A+ A  ++I+
Sbjct: 180 DGYSKIGEFEEALLAFKKMID 200


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 340/577 (58%), Gaps = 39/577 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GN 122
           + N +I  ++++ +  +A   F++M E ++V++ S+++G+   G    AL +F KML  +
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           L+ P+ FT A+V+ AC+ L  L  GKQIH+HI T GF  + +V ++L+ MY +C  V+ A
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333

Query: 183 RRVFDLMGC---------------------------------RNVVSWTSIIVAHAQNAQ 209
           RR+ +  G                                  R+VV+WT++IV + Q+  
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+ +FR        RPN + LA++++  +SL  L  GK  HG  V+SG  ++  V++
Sbjct: 394 YGEAINLFRSM-VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSN 452

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           AL+ MYAK G++  + + F+ I      V++TSMI+  A++G    +L+LF  M+  G++
Sbjct: 453 ALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR 512

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ +T+VGV  AC+H+GLV++G Q+ D M     IIP   HY C+VD+ GR G L EA +
Sbjct: 513 PDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQE 572

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + ++PD   + WG+LLSA R+H  +D+   A+ +L+    + + AY  L+N Y+  
Sbjct: 573 FIEKMPIEPD--VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSAC 630

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G+WE    +R  MK   + KE G SW+E++ + + F   +      +E+   ++++  ++
Sbjct: 631 GKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEI 690

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K+ GYV   T  V  D+E+E +E+I+  HSE+LA+AFGLIS P   T+RIMKNLR+C DC
Sbjct: 691 KKMGYVP-DTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDC 749

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS +V R+ +VRD  RFHHF++G CSC D+W
Sbjct: 750 HTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 209/469 (44%), Gaps = 98/469 (20%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML------------------- 89
           VH  ++KSG + + + +N+L+N Y +      AR+LFDEM                    
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 90  ------------EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
                       + + VS+T+++ GY N+GQ   A+ +   M+   + P +FT   V+ +
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            +    + TGK++H+ I   G + N+ V +SL++MY KC D   A+ VFD M  R++ SW
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 198 TSIIVAHAQ-----------------------------NAQGHE--ALEMFREFNYQSRD 226
            ++I  H Q                             N +G++  AL++F +    S  
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV----- 281
            P++  LASV++ACA+L +L  GK  H  +V +G + + +V +AL+ MY++CG V     
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 282 ----------------------------NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
                                       N +  +F  + +  VV +T+MIVG  ++G   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYG 395

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            +++LF  M+  G +PN  T   +L   S    +  G Q +     K G I        +
Sbjct: 396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQ-IHGSAVKSGEIYSVSVSNAL 454

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           + M  + G +  A +    I+ + D   + W +++ A   HG  + A+E
Sbjct: 455 ITMYAKAGNITSASRAFDLIRCERD--TVSWTSMIIALAQHGHAEEALE 501



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 169/427 (39%), Gaps = 115/427 (26%)

Query: 126 PNEFTFATVIKACSMLAD--------LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           P   + +T+++ C+ L            T + +H  +   G  +++ + ++L+++Y K  
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 178 DVDGARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQ 206
               AR++FD M  R                                 VSWT++IV +  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
             Q H+A+ +  +   +  + P Q  L +V+ + A+   + +GK  H  +V+ G   N  
Sbjct: 124 IGQYHKAIRVMGDMVKEGIE-PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS 182

Query: 267 VASALVDMYAKCGSVNYSDKVFNR-------------------------------ISNPS 295
           V+++L++MYAKCG    +  VF+R                               ++   
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACS-----------H 343
           +VT+ SMI G  + G    +LD+F++M+    + P+  T   VL AC+           H
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302

Query: 344 SGLVDEG-------IQHLDSMYRKYGIIPDAKH--------------YTCVVDMLGRTGR 382
           S +V  G       +  L SMY + G +  A+               +T ++D   + G 
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           +++A  +  S++   D   + W  ++     HG    A+     ++   Q+         
Sbjct: 363 MNQAKNIFVSLK---DRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR--------P 411

Query: 443 NTYALAG 449
           N+Y LA 
Sbjct: 412 NSYTLAA 418



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           +H   +KSG + +    N LI  Y +      A + FD +  E + VS+TS++      G
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHG 494

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG-FQYNLVVC 166
             + AL LF+ ML   + P+  T+  V  AC+    +  G+Q    ++        L   
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
           + +VD++G+   +  A+   + M    +VV+W S++ A
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 342/565 (60%), Gaps = 24/565 (4%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMAGYINMGQPQIALL 114
           + +  + N ++  Y ++ + + A +LF++M E     +VV++++ ++GY   G    AL 
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--------NLVVC 166
           + ++ML + + PNE T  +V+  C+ +  L+ GK+IH +   +            N+V+ 
Sbjct: 352 VCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI- 410

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQ 223
           + L+DMY KC  VD AR +FD +    R+VV+WT +I  ++Q+   ++ALE+  E F   
Sbjct: 411 NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV---VASALVDMYAKCGS 280
            + RPN   ++  + ACASL  L  GK  H   +R+  + N V   V++ L+DMYAKCG 
Sbjct: 471 CQTRPNAFTISCALVACASLAALSIGKQIHAYALRN--QQNAVPLFVSNCLIDMYAKCGD 528

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  +  VF+ +   + VT+TS++ G   +G G  +L +F EM   G K + VT + VL+A
Sbjct: 529 IGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYA 588

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSHSG++D+G+++ + M   +G+ P  +HY C+VD+LGR GRL+ A +L + + ++P   
Sbjct: 589 CSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPP-- 646

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P++W  LLS  R+HG+V++   A+ ++ E       +Y  LSN YA AG W++V  +RS 
Sbjct: 647 PVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSL 706

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M+  GI K PGCSWVE    T  F+ G+       E+  +L +  +++K+ GYV  +TG 
Sbjct: 707 MRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYV-PETGF 765

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
              DV+DE +++++  HSE+LALA+G+++ P+G  IRI KNLR+C DCH  F  +S I++
Sbjct: 766 ALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIID 825

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
            + ++RD +RFHHF+NG CSC  +W
Sbjct: 826 HEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 223/484 (46%), Gaps = 49/484 (10%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQ--LQECKHLISLASVHSEILKSGFLSNT 62
           + R L+   AA+   +  K S   T A  I    + +CK +  +  +H ++L  G L+  
Sbjct: 1   MIRRLVTLRAAAKSHQHLKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLN 60

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
            T +HLI+ Y+ L     A  L       +  V  + SL+  Y N G+    L  F  ++
Sbjct: 61  LT-SHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFC-LM 118

Query: 121 GNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
            +L W P+ +TF  V KAC  ++ +  G   H      GF  N+ V ++LV MY +C  +
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSL 178

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             AR+VFD M   +VVSW SII ++A+  +   ALEMF +   +   RP+   L +V+  
Sbjct: 179 SDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPP 238

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           CAS+G    GK  HG  V S    N  V + LVDMYAK G ++ ++ VF+ +    VV++
Sbjct: 239 CASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSW 298

Query: 300 TSMIV-----------------------------------GAAKYGLGRFSLDLFNEMIS 324
            +M+                                    G A+ GLG  +L +  +M+S
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSM-----YRKYGIIPDAKHYTCVVDMLG 378
            GIKPN+VT + VL  C+  G +  G + H  ++      RK G   +      ++DM  
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYA 418

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           +  ++D A  +  S+    +   + W  ++     HG  + A+E  +++ E + Q     
Sbjct: 419 KCKKVDIARAMFDSLS-PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477

Query: 439 VTLS 442
            T+S
Sbjct: 478 FTIS 481



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 155/328 (47%), Gaps = 28/328 (8%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYTSLMAGYINMGQP 109
           ++ K+G       +N LI+ Y + KK  +AR +FD +   E +VV++T ++ GY   G  
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456

Query: 110 QIALLLFQKMLGN--LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN---LV 164
             AL L  +M        PN FT +  + AC+ LA L  GKQIH +      Q N   L 
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAY--ALRNQQNAVPLF 514

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V + L+DMY KC D+  AR VFD M  +N V+WTS++  +  +  G EAL +F E     
Sbjct: 515 VSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG 574

Query: 225 RDRPNQHMLASVINACASLGRLVSG-----KVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
                  +L  V+ AC+  G +  G     ++     V  G E      + LVD+  + G
Sbjct: 575 FKLDGVTLLV-VLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEH----YACLVDLLGRAG 629

Query: 280 SVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEMISRGIKPNDVTFV 335
            +N + ++   +   P  V + +++     +G   LG ++     E+ S     ND ++ 
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASN----NDGSYT 685

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGI 363
            + +  +++G   + +  + S+ R  GI
Sbjct: 686 LLSNMYANAGRWKD-VTRIRSLMRHKGI 712


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/627 (34%), Positives = 338/627 (53%), Gaps = 74/627 (11%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG- 107
           VH     SGF S++F  + L++ Y++  + + A ++FD M EP+VVS+++L+A Y   G 
Sbjct: 136 VHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGC 195

Query: 108 ----------------QPQI------------------ALLLFQKMLGNLVWPNEFTFAT 133
                           QP +                  A+L+F  M      P+  T ++
Sbjct: 196 VDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISS 255

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---- 189
           V+ A   L DL+ G  IH ++   G   +  V S+L+DMYGKC+      +VFD M    
Sbjct: 256 VLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMD 315

Query: 190 --GCR-----------------------------NVVSWTSIIVAHAQNAQGHEALEMFR 218
              C                              NVVSWTS+I   +QN +  EALE+FR
Sbjct: 316 VGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFR 375

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           E       +PN   +  ++ AC ++  L+ GK AH   +R G   +  V SAL+DMYAKC
Sbjct: 376 EMQIAGV-KPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKC 434

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +  S   F+ I   ++V + ++I G A +G  + ++++F+ M   G KP+ ++F  VL
Sbjct: 435 GRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVL 494

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACS SGL +EG  + +SM  KYGI    +HY C+V +L R G+L++AY + + + V+PD
Sbjct: 495 SACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPD 554

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +WG LLS+ R+H  V +   A+ +L E        Y+ LSN YA  G W  V+ +R
Sbjct: 555 A--CVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVR 612

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MK  G+ K PGCSW+E++++ +   AG+    + ++++  L +L  +MK+ GY   + 
Sbjct: 613 DMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYF-PEI 671

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V  DVE++ +E+I+  HSE+LA+ FGL++ P G  ++++KNLR+C DCH V K IS  
Sbjct: 672 NFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSF 731

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
             R+  VRD NRFHHF+ G+CSCGD+W
Sbjct: 732 ERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 203/454 (44%), Gaps = 75/454 (16%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+ ILK+G  ++T     L++ Y        A  + D + EPNV S+++L+  +    Q 
Sbjct: 36  HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             AL  F +ML   + P+     + +KAC+ L+ L   +Q+H      GF  +  V SSL
Sbjct: 96  HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---------- 219
           V MY KCN +  A RVFD M   +VVSW++++ A+A+     EA  +F E          
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL 215

Query: 220 ---------FNYQSRD---------------RPNQHMLASVINACASLGRLVSGKVAHGV 255
                    FN+                    P+   ++SV+ A   L  LV G + HG 
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGY 275

Query: 256 VVRSGCEFNDVVASALVDMYAKC-------------------------------GSVNYS 284
           V++ G   +  V+SAL+DMY KC                               G V  S
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335

Query: 285 DKVFNRISNP----SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
            ++F ++ +     +VV++TSMI   ++ G    +L+LF EM   G+KPN VT   +L A
Sbjct: 336 LRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPA 395

Query: 341 CSH-SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           C + + L+     H  S+ R  GI  D    + ++DM  + GR+  +      I   P  
Sbjct: 396 CGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQASRICFDGI---PTK 450

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
             + W  +++   +HG+   A+E  + +  S Q+
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQK 484



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 2/240 (0%)

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           S  A L   +Q H HI   G   +  + + L+  Y        A  V DL+   NV S++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I A ++  Q H AL  F +   +    P+  +L S + ACA L  L   +  HG+   
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGL-MPDNRVLPSAVKACAGLSALKPARQVHGIASV 142

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           SG + +  V S+LV MY KC  +  + +VF+R+  P VV++++++   A+ G    +  L
Sbjct: 143 SGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRL 202

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F+EM   G++PN +++ G++   +HSGL  E +     M+ + G  PD    + V+  +G
Sbjct: 203 FSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR-GFEPDGTTISSVLPAVG 261



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C ++ +L    + H   L+ G  ++ +  + LI+ Y +  + Q +R  FD +   N+
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           V + +++AGY   G+ + A+ +F  M  +   P+  +F  V+ ACS
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACS 498


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/545 (37%), Positives = 323/545 (59%), Gaps = 12/545 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N +I+ Y +      AR+LF+E    +V ++T+++  Y+  G    A  +F +M 
Sbjct: 218 DLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP 277

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                  E ++  +I   +    +  G+++    E   F  N+   + ++  Y +  D+ 
Sbjct: 278 QK----REMSYNVMIAGYAQYKRMDMGREL---FEEMPFP-NIGSWNIMISGYCQNGDLA 329

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR +FD+M  R+ VSW +II  +AQN    EA+ M  E   +  +  N+      ++AC
Sbjct: 330 QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK-RDGESLNRSTFCCALSAC 388

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A +  L  GK  HG VVR+G E   +V +ALV MY KCG ++ +  VF  + +  +V++ 
Sbjct: 389 ADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWN 448

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +M+ G A++G GR +L +F  MI+ G+KP+++T VGVL ACSH+GL D G ++  SM + 
Sbjct: 449 TMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKD 508

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           YGI P++KHY C++D+LGR G L+EA  L +++  +PD     WG LL ASR+HG +++ 
Sbjct: 509 YGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAA--TWGALLGASRIHGNMELG 566

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
            +A+  + +     +  YV LSN YA +G W +V  +R +M++ G+ K PG SWVE++++
Sbjct: 567 EQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNK 626

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F  G+        + + L EL+ KMK  GYV   T LV  DVE+E ++ ++  HSE+
Sbjct: 627 IHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYV-SSTKLVLHDVEEEEKKHMLKYHSEK 685

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AFG++++P G  IR+MKNLR+C DCH+  K IS IV R  +VRD +R+HHF  G CS
Sbjct: 686 LAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICS 745

Query: 601 CGDFW 605
           C D+W
Sbjct: 746 CRDYW 750



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 173/383 (45%), Gaps = 46/383 (12%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F+ N ++  Y R ++ + AR LFD M E +VVS+ ++++GY+  G    A  +F +M 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM- 152

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCND 178
                P++      I    +LA  +   ++      F  +  + L+ C+ L+  Y K N 
Sbjct: 153 -----PHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNM 203

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  AR++FD +  R+++SW ++I  +AQ+    +A  +F E   +        + A V +
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263

Query: 239 ACASLGRLV------SGKVAHGVVVRSGCEF----------------NDVVASALVDMYA 276
                 R V        ++++ V++    ++                N    + ++  Y 
Sbjct: 264 GMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYC 323

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           + G +  +  +F+ +     V++ ++I G A+ GL   ++++  EM   G   N  TF  
Sbjct: 324 QNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC 383

Query: 337 VLHACSHSGLVDEGIQ-H---LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
            L AC+    ++ G Q H   + + Y K  ++ +A     +V M  + G +DEAY + + 
Sbjct: 384 ALSACADIAALELGKQVHGQVVRTGYEKGCLVGNA-----LVGMYCKCGCIDEAYDVFQG 438

Query: 393 IQVDPDGGPLLWGTLLSASRLHG 415
           +Q       + W T+L+    HG
Sbjct: 439 VQ---HKDIVSWNTMLAGYARHG 458



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 186/432 (43%), Gaps = 73/432 (16%)

Query: 44  ISLASVHSEIL----KSGFLSNTFTLNHLINC------YVRLKKTQVARQLFDEMLEPNV 93
            +L  +HS I      + +    F   H + C      ++R     +A  +FD M   N 
Sbjct: 5   FNLRQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNS 64

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VSY ++++GY+   +  +A  LF KM      P++              DL         
Sbjct: 65  VSYNAMISGYLRNAKFSLARDLFDKM------PHK--------------DL--------- 95

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                F +NL++       Y +   +  AR +FD M  ++VVSW +++  + ++    EA
Sbjct: 96  -----FSWNLMLTG-----YARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEA 145

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
            ++F    +++    N  +LA+ + +    GRL   +     +  S  ++  +  + L+ 
Sbjct: 146 RDVFDRMPHKNSISWNG-LLAAYVRS----GRLEEAR----RLFESKSDWELISCNCLMG 196

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
            Y K   +  + ++F++I    ++++ +MI G A+ G    +  LF E   R +     T
Sbjct: 197 GYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FT 252

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           +  +++A    G++DE  +  D M +K  +      Y  ++    +  R+D   +L + +
Sbjct: 253 WTAMVYAYVQDGMLDEARRVFDEMPQKREM-----SYNVMIAGYAQYKRMDMGRELFEEM 307

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
              P+ G   W  ++S    +G  D+A +A N      Q+ + ++  +   YA  G +E 
Sbjct: 308 PF-PNIGS--WNIMISGYCQNG--DLA-QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEE 361

Query: 454 VHSLRSEMKRTG 465
             ++  EMKR G
Sbjct: 362 AMNMLVEMKRDG 373



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 13/250 (5%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNT 62
            +N ++  A + L    +      ++ F   L  C  + +L     VH +++++G+    
Sbjct: 354 AQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGC 413

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
              N L+  Y +      A  +F  +   ++VS+ +++AGY   G  + AL +F+ M+  
Sbjct: 414 LVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITA 473

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
            V P+E T   V+ ACS       G +  H+  + +G   N    + ++D+ G+   ++ 
Sbjct: 474 GVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEE 533

Query: 182 ARRVFDLMGCR-NVVSWTSIIVA---HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           A+ +   M    +  +W +++ A   H     G +A EM   F  +     N  M   + 
Sbjct: 534 AQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMV--FKMEPH---NSGMYVLLS 588

Query: 238 NACASLGRLV 247
           N  A+ GR V
Sbjct: 589 NLYAASGRWV 598


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 334/549 (60%), Gaps = 6/549 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L +  +   LI  YV       AR+LFDE+   +VVS+ ++++GY+  G+ + A++ F +
Sbjct: 194 LRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYE 253

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M    V PN+ T   V+ AC        GK I + +   GF  NL + ++L+DMY KC +
Sbjct: 254 MQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE 313

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
            D AR +FD +  ++V+SW ++I  ++  +   EAL +F E   +S  +PN      +++
Sbjct: 314 TDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALF-EVMLRSNVKPNDVTFLGILH 372

Query: 239 ACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           ACA LG L  GK  H  + ++     N  + ++L+DMYAKCG +  +++VF  + + ++ 
Sbjct: 373 ACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLA 432

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           ++ +M+ G A +G    +L LF+EM+++G+ +P+D+TFVGVL AC+ +GLVD G Q+  S
Sbjct: 433 SWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRS 492

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M + YGI P  +HY C++D+L R  + +EA  L K+++++PDG   +WG+LLSA + HGR
Sbjct: 493 MIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGA--IWGSLLSACKAHGR 550

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           V+     + +L +   + A A+V LSN YA AG W++V  +R+ +   G+ K PGC+ +E
Sbjct: 551 VEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIE 610

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           I    + F  G+      + +  +L E+++ ++E G+V   T  V  D+++E +E  +  
Sbjct: 611 IDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVP-NTSEVLYDMDEEWKEGALSQ 669

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA++FGLI    G TIRI+KNLR+C +CH   KLIS I  R+ + RD NRFHHF++
Sbjct: 670 HSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 729

Query: 597 GSCSCGDFW 605
           G CSC D W
Sbjct: 730 GFCSCNDCW 738



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 208/435 (47%), Gaps = 46/435 (10%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLK-KTQVARQLFDEMLE 90
           ++  L++CK++ +   +HS I+K+G  +  F  + LI+ C V        A  LF+E  +
Sbjct: 31  YLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQ 90

Query: 91  P---NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
               NV  + SL+ GY     P  +L LF +ML   V PN  TF  + K+C+       G
Sbjct: 91  HHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEG 150

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCND----------------------------- 178
           KQ+H H       +N  V +S++ MY    +                             
Sbjct: 151 KQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQ 210

Query: 179 --VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             +D ARR+FD +  ++VVSW ++I  + Q+ +  EA+  F E   ++   PN+  +  V
Sbjct: 211 GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ-EANVLPNKSTMVVV 269

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           ++AC        GK     V  +G   N  + +AL+DMY KCG  + + ++F+ I    V
Sbjct: 270 LSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDV 329

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI---QH 353
           +++ +MI G +   L   +L LF  M+   +KPNDVTF+G+LHAC+  G +D G     +
Sbjct: 330 ISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAY 389

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
           +D   R      +A  +T ++DM  + G ++ A ++ +S+          W  +LS   +
Sbjct: 390 IDKNLRNSS---NASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS---WNAMLSGFAM 443

Query: 414 HGRVDIAVEASNQLI 428
           HG  + A+   ++++
Sbjct: 444 HGHAERALALFSEMV 458


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 323/573 (56%), Gaps = 8/573 (1%)

Query: 37  LQECKHL--ISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L  IS A+ +H  ++K G     F  N LIN Y +      A+++F +M   +V
Sbjct: 280 LPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDV 339

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S++A Y     P  A   F KM  N + P+  T  ++    +   D    + +H  
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF 399

Query: 154 IETFGFQYNLVVC-SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           I   G+    VV  ++++DMY K   +D A +VF+L+  ++VVSW ++I  + QN    E
Sbjct: 400 IMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASE 459

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           A+E++R        + NQ    S++ A A +G L  G   HG ++++    +  V + L+
Sbjct: 460 AIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLI 519

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           D+Y KCG +  +  +F ++   S V + ++I     +G G  +L LF EM   G+KP+ V
Sbjct: 520 DLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHV 579

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ +L ACSHSGLVDEG      M ++YGI P  KHY C+VD+LGR G L+ AY   K 
Sbjct: 580 TFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKD 638

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + PD    +WG LL A R+HG +++   AS++L E + +    YV LSN YA  G+WE
Sbjct: 639 MPLHPDAS--IWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWE 696

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +RS  +  G+ K PG S +E+  +   FY GN    +  E+ + LR L  KMK  G
Sbjct: 697 GVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLG 756

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y+   +  V  DVE++ +E I+  HSERLA+AFG+IS P    IRI KNLR+C DCH+  
Sbjct: 757 YIPDYS-FVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNAT 815

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS I ER+ VVRD  RFHHF+NG CSCGD+W
Sbjct: 816 KFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 201/392 (51%), Gaps = 7/392 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C+ L+    +H  + K GF  + F    LI+ Y R     +AR LFD+M   +
Sbjct: 178 FPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRD 237

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + S+ ++++G I  G    AL +  +M    +  +  T A+++  C+ L D+ T   IH 
Sbjct: 238 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHL 297

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           ++   G ++ L V ++L++MY K  ++  A++VF  M  R+VVSW SII A+ QN     
Sbjct: 298 YVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVT 357

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV-ASAL 271
           A   F +      + P+   L S+ +  A      + +  HG ++R G     VV  +A+
Sbjct: 358 ARGFFFKMQLNGLE-PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAV 416

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN 330
           +DMYAK G ++ + KVFN I    VV++ ++I G  + GL   +++++  M   R IK N
Sbjct: 417 MDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLN 476

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V +L A +H G + +G++ +     K  +  D    TC++D+ G+ GRL +A  L 
Sbjct: 477 QGTWVSILAAYAHVGALQQGMR-IHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLF 535

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             +   P    + W  ++S   +HG  + A++
Sbjct: 536 YQV---PRESSVPWNAIISCHGIHGHGEKALK 564



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 210/438 (47%), Gaps = 10/438 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F      C   +    +H+ ++ SG + + F    L+N Y  L    ++R  FD++   +
Sbjct: 79  FNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKD 138

Query: 93  VVSYTSLMAGYINMGQPQIAL-LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           V ++ S+++ Y+  G  + A+   +Q +L      + +TF  V+KAC  L D   G++IH
Sbjct: 139 VYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIH 195

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   GFQ+++ V +SL+ MY +   V  AR +FD M  R++ SW ++I    QN    
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +AL++  E   +  +  +   +AS++  CA LG + +  + H  V++ G EF   V++AL
Sbjct: 256 QALDVLDEMRLEGINM-DSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNAL 314

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           ++MYAK G++  + KVF ++    VV++ S+I    +      +   F +M   G++P+ 
Sbjct: 315 INMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDL 374

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T V +    + S            + R+  ++        V+DM  + G +D A+K+  
Sbjct: 375 LTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFN 434

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAG 449
            I   P    + W TL+S    +G    A+E    + E  +   N   +V++   YA  G
Sbjct: 435 LI---PVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVG 491

Query: 450 EWENVHSLRSEMKRTGIH 467
             +    +   + +T +H
Sbjct: 492 ALQQGMRIHGHLIKTNLH 509



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 132/267 (49%), Gaps = 9/267 (3%)

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E  F ++  +C+     +  K++H  +   G   +  +   LV++Y    DV  +R  FD
Sbjct: 76  EIDFNSLFDSCT---KTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFD 132

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V +W S+I A+ +N    EA++ F +    ++ + + +    V+ AC +   LV
Sbjct: 133 QIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT---LV 189

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G+  H  V + G +++  VA++L+ MY++ G V  +  +F+ +    + ++ +MI G  
Sbjct: 190 DGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPD 366
           + G    +LD+ +EM   GI  + VT   +L  C+  G  D     L  +Y  K+G+  +
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLG--DISTATLIHLYVIKHGLEFE 307

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSI 393
                 +++M  + G L +A K+ + +
Sbjct: 308 LFVSNALINMYAKFGNLGDAQKVFQQM 334


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 339/576 (58%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  L  L    +V      +G+  + F  + L++ Y R      A ++FD M 
Sbjct: 114 FTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMP 173

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + V++++++AG+++ G+P  AL ++ +M  + V  +E     VI+AC++  +   G  
Sbjct: 174 RKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGAS 233

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H      G + ++V+ +SLVDMY K    D AR+VF +M  RN VSW ++I   AQN  
Sbjct: 234 VHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGH 293

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL++FRE +  S  +P+   L S + ACA +G L  GK  HG ++R   EF  ++ +
Sbjct: 294 ADEALDLFREMS-TSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGT 351

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A++DMY+KCGS+  + K+FN++S+  +V + +MI     +G G  +L LF E+   GIKP
Sbjct: 352 AVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKP 411

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  +L A SHSGLV+EG    D M  ++GI P  KH  CVVD+L R+G ++EA ++
Sbjct: 412 DHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEM 471

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+  +P     +W  LLS    + ++++    + +++ES  +       +SN YA A 
Sbjct: 472 LASMHTEPT--IPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAK 529

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W+ V  +R  MK +G  K PG S +E+    +AF   +    +  E+L ++ +L  +M+
Sbjct: 530 KWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMR 589

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GYV  +T  V+ D++++ +E+++  HSERLA+AFGL++   G  + I+KNLR+C DCH
Sbjct: 590 KMGYV-PRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCH 648

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K IS IV+R+ VVRD  RFHHF++G+CSCGD+W
Sbjct: 649 DAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 17/328 (5%)

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + ++ +L+A     G P  AL +F + L +   P+  TF   + AC+ L DL   + +  
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVF-RALPSSARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                G+  ++ VCS+L+ +Y +C  +  A RVFD M  ++ V+W++++       +  E
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL M+           ++ ++  VI AC   G    G   HG  +R G   + V+A++LV
Sbjct: 196 ALGMYSRMREHGVAE-DEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLV 254

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAK G  + + +VF  +   + V++ ++I G A+ G    +LDLF EM + G++P+  
Sbjct: 255 DMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSG 314

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC-----VVDMLGRTGRLDEAY 387
             V  L AC+  G +  G          +G I     + C     V+DM  + G L+ A 
Sbjct: 315 ALVSALLACADVGFLKLGKS-------IHGFILRRLEFQCILGTAVLDMYSKCGSLESAR 367

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           KL   +        +LW  +++    HG
Sbjct: 368 KLFNKLS---SRDLVLWNAMIACCGTHG 392



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 121/268 (45%), Gaps = 8/268 (2%)

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRN--VVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           SL   Y +   +D A             + +W +++ A ++      AL +FR     S 
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRAL--PSS 106

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            RP+       + ACA LG L + +        +G   +  V SAL+ +Y++CG++  + 
Sbjct: 107 ARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAI 166

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF+ +     V +++M+ G    G    +L +++ M   G+  ++V  VGV+ AC+ +G
Sbjct: 167 RVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTG 226

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
               G   +   + ++G+  D    T +VDM  + G  D A ++ + +   P    + W 
Sbjct: 227 NTRMGAS-VHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMM---PYRNAVSWN 282

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQ 433
            L+S    +G  D A++   ++  S  Q
Sbjct: 283 ALISGFAQNGHADEALDLFREMSTSGLQ 310


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 315/528 (59%), Gaps = 7/528 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML---GNLVWPNEFTFATVIKA 137
           AR LFD M   +  S++++++ ++  GQP+ AL ++++ML   G     NEFT ++ + A
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAA 171

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            +       G+++H H+   G   + VV S+L DMY K   +D AR VFD M  R+VVSW
Sbjct: 172 ATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSW 231

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T+++  +    +  E   +F     +S   PN+   A V+ ACA       GK  HG + 
Sbjct: 232 TAMLDRYFDAGRDGEGFRLFVRM-MRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMA 290

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           +S    +    SALV MY+K G +  + +VF  +  P +V++T+MI G A+ G    +L 
Sbjct: 291 KSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALH 350

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
            F+ ++S G +P+ VTFVGVL AC+H+GLVD+G+    S+  KYGI   A HY CV+D+L
Sbjct: 351 CFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLL 410

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R+G  + A  +  ++ V P+    LW +LL   R+H  V +A  A+  L E   +    
Sbjct: 411 SRSGLFERAEDMINTMPVKPNK--FLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPAT 468

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YVTL+N YA  G ++ V ++R  M+  GI K P  SW+E+  + + F  G+    +  E+
Sbjct: 469 YVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEI 528

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            +LL++L  KM+E GYV   TG V  DVEDE +++ +G HSERLA+AFG+I+ PKG  I+
Sbjct: 529 YALLKKLYVKMREEGYVA-DTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIK 587

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           + KNLR+C DCH   KLIS IV+R+ +VRD NRFHHF+NGSCSC D+W
Sbjct: 588 VFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 150/304 (49%), Gaps = 6/304 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +++ G  ++    + L + Y +  +   AR +FD M   +VVS+T+++  Y + G+
Sbjct: 184 LHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGR 243

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
                 LF +M+ + + PNEFT+A V++AC+       GKQ+H  +       +    S+
Sbjct: 244 DGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSA 303

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY K  D+  A RVF  M   ++VSWT++I  +AQN Q  EAL  F +    S  RP
Sbjct: 304 LVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCF-DMLLSSGFRP 362

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           +      V++ACA  G +  G  + H +  + G E      + ++D+ ++ G    ++ +
Sbjct: 363 DHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDM 422

Query: 288 FNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSG 345
            N +   P+   + S++ G   +   R +      +    I+P N  T+V + +  +  G
Sbjct: 423 INTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFE--IEPENPATYVTLANIYASVG 480

Query: 346 LVDE 349
           L DE
Sbjct: 481 LFDE 484


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 328/557 (58%), Gaps = 5/557 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H  +LKSG L + +  N LI+ Y R      A Q+ D +   +V SY S+++  +  G  
Sbjct: 151 HGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCR 210

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             A  + ++M+   V  +  T+ +V+  C+ + DL  G QIH  +   G  +++ V S+L
Sbjct: 211 GEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTL 270

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +D YGKC +V  AR+ FD +  RNVV+WT+++ A+ QN    E L +F +   +   RPN
Sbjct: 271 IDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDT-RPN 329

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +   A ++NACASL  L  G + HG +V SG + + +V +AL++MY+K G+++ S  VF+
Sbjct: 330 EFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFS 389

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            + N  V+T+ +MI G + +GLG+ +L +F +M+S G  PN VTF+GVL AC H  LV E
Sbjct: 390 NMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQE 449

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK-SIQVDPDGGPLLWGTLL 408
           G  + D + +K+ + P  +HYTC+V +LGR G LDEA    K + QV  D   + W TLL
Sbjct: 450 GFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWD--VVAWRTLL 507

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A  +H   ++  + +  +I+ +      Y  LSN +A A +W+ V  +R  MK   I K
Sbjct: 508 NACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKK 567

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW++IR+ T+ F +  +     +++   +++L   +K  GY     G+V  DVEDE
Sbjct: 568 EPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGY-APDVGVVLHDVEDE 626

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LALA+GL+ IP    IRI+KNLRMC DCH   KLIS    R  +VRD 
Sbjct: 627 QKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDA 686

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHFR G C+C D W
Sbjct: 687 NRFHHFREGLCTCNDHW 703



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 212/421 (50%), Gaps = 22/421 (5%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           S+   +N LIN Y +  +++ AR+LFD ML+ NVVS+++LM GY++ G+    L LF+ +
Sbjct: 59  SDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNL 118

Query: 120 LG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           +  +  +PNE+ F  V+  C+    +  GKQ H ++   G   +  V ++L+ MY +C  
Sbjct: 119 VSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFH 178

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD A ++ D +   +V S+ SI+ A  ++    EA ++ +    +     +     SV+ 
Sbjct: 179 VDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIW-DSVTYVSVLG 237

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +  L  G   H  ++++G  F+  V+S L+D Y KCG V  + K F+ + + +VV 
Sbjct: 238 LCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVA 297

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-SHSGLVDEGIQH---L 354
           +T+++    + G    +L+LF +M     +PN+ TF  +L+AC S   L    + H   +
Sbjct: 298 WTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIV 357

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            S ++ + I+ +A     +++M  ++G +D +Y +  ++    +   + W  ++     H
Sbjct: 358 MSGFKNHLIVGNA-----LINMYSKSGNIDSSYNVFSNMM---NRDVITWNAMICGYSHH 409

Query: 415 GRVDIAVEASNQLIESNQQVANAYVT----LSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
           G    A+     ++ + +     YVT    LS    LA   E  +     MK+  +  EP
Sbjct: 410 GLGKQALLVFQDMMSAGE--CPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDV--EP 465

Query: 471 G 471
           G
Sbjct: 466 G 466



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 116/201 (57%), Gaps = 1/201 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+++LK+G + + F  + LI+ Y +  +   AR+ FD + + NVV++T+++  Y+  G 
Sbjct: 251 IHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGH 310

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L LF KM      PNEFTFA ++ AC+ L  L  G  +H  I   GF+ +L+V ++
Sbjct: 311 FEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNA 370

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY K  ++D +  VF  M  R+V++W ++I  ++ +  G +AL +F++    + + P
Sbjct: 371 LINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDM-MSAGECP 429

Query: 229 NQHMLASVINACASLGRLVSG 249
           N      V++AC  L  +  G
Sbjct: 430 NYVTFIGVLSACVHLALVQEG 450


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 331/571 (57%), Gaps = 45/571 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L  +     VH  + K G  SN F  N L++ Y ++    +A++LFDEM+
Sbjct: 130 FTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMV 189

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +VVS+ +L++GY   G    A ++F  M+                             
Sbjct: 190 VRDVVSWNTLISGYCFSGMVDKARMVFDGMM----------------------------- 220

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
                     + NLV  S+++  Y +  +++ AR++F+ M  RNVVSW ++I  +AQN +
Sbjct: 221 ----------EKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEK 270

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A+E+FR+  ++    PN   L SV++ACA LG L  GK  H  + R+  E    + +
Sbjct: 271 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 330

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL DMYAKCG V  +  VF+ +    V++++ +I+G A YG    + + F EMI  G++P
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 390

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ND++F+G+L AC+H+GLVD+G+++ D M + YGI P  +HY CVVD+L R GRLD+A  L
Sbjct: 391 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 450

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+ + P+   ++WG LL   R++   +       +++E +   + + V L+N YA  G
Sbjct: 451 INSMPMQPN--VIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
             ++  S R  M+     K PGCSW+EI +  Y F+ G++   +   + S++REL+ KMK
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMK 568

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GY   KT LV  ++++E +E+ +  HSE+LALAFGLI+  +G TIRI+KNLR+C DCH
Sbjct: 569 VAGY-KPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCH 627

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           D  K+IS IVER+ VVRD +RFHHF++G CS
Sbjct: 628 DAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 332/557 (59%), Gaps = 7/557 (1%)

Query: 48   SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
            ++H   +K+ F       N L++ Y +      A ++F +M +  +VS+TS +A Y+  G
Sbjct: 592  ALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREG 651

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
                A+ LF +M    V P+ +T  +++ AC+  + L  G+ +H+++   G   NL V +
Sbjct: 652  LYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN 711

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
            +L++MY KC  V+ AR VF  +  +++VSW ++I  ++QN+  +EALE+F   + Q + +
Sbjct: 712  ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF--LDMQKQFK 769

Query: 228  PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDK 286
            P+   +A V+ ACA L  L  G+  HG ++R G  F+D+ VA ALVDMYAKCG +  +  
Sbjct: 770  PDDITMACVLPACAGLAALDKGREIHGHILRRG-YFSDLHVACALVDMYAKCGLLVLAQL 828

Query: 287  VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            +F+ I    ++++T MI G   +G G  ++  FNEM   GI+P++ +F  +L+ACSHSGL
Sbjct: 829  LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGL 888

Query: 347  VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
            ++EG +  +SM  + G+ P  +HY CVVD+L R G L +AYK  +S+ + PD    +WG 
Sbjct: 889  LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD--TTIWGV 946

Query: 407  LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            LLS  R+H  V +A + +  + E        YV L+N YA A +WE V  LR  M++ G 
Sbjct: 947  LLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGF 1006

Query: 467  HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
             + PGCSW+E+  +   F AGN+   +   +  LLR+L  +M+   Y       V ++ +
Sbjct: 1007 KQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYF-SMFRYVLINED 1065

Query: 527  DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            D  +E I   HSE+ A+AFG++++P G T+R+ KN R+C DCH++ K +S   +R+ V+R
Sbjct: 1066 DMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLR 1125

Query: 587  DVNRFHHFRNGSCSCGD 603
            D NRFHHF++G CSC D
Sbjct: 1126 DSNRFHHFKDGLCSCRD 1142



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 212/436 (48%), Gaps = 12/436 (2%)

Query: 7   RNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLN 66
           RN I  L  S        S C      +Q   E K L     VHS I+ +G   +     
Sbjct: 353 RNAIELLTKSKSYELGLNSYCSV----LQLCAEKKSLEDGKRVHSVIISNGISIDEALGA 408

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L+  YV        R++FD+++   V  +  LM+ Y  +G  + ++ LF+KM    V  
Sbjct: 409 KLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG 468

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N +TF  V+K  + L  +   K++H ++   GF  N  V +SL+  Y K   V+ A  +F
Sbjct: 469 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 528

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D +   +VVSW S+I     N      LE+F +      +  +   L SV+ A A++G L
Sbjct: 529 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVAWANIGNL 587

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+  HG  V++      V ++ L+DMY+KCG++N + +VF ++ + ++V++TS I   
Sbjct: 588 SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAY 647

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
            + GL   ++ LF+EM S+G++P+  T   ++HAC+ S  +D+G + + S   K G+  +
Sbjct: 648 VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG-RDVHSYVIKNGMGSN 706

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
                 +++M  + G ++EA  +   I   P    + W T++     + +  +  EA   
Sbjct: 707 LPVTNALINMYAKCGSVEEARLVFSKI---PVKDIVSWNTMIGG---YSQNSLPNEALEL 760

Query: 427 LIESNQQVANAYVTLS 442
            ++  +Q     +T++
Sbjct: 761 FLDMQKQFKPDDITMA 776


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 327/574 (56%), Gaps = 41/574 (7%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM-LGNLVWP 126
           +I  YVR  +   ARQ  D M E  VV++ ++++GY++ G    AL +F+KM L  + W 
Sbjct: 231 MIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW- 289

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           +EFT+ +V+ AC+     + GKQ+H +I          ++L V ++L  +Y KC  VD A
Sbjct: 290 DEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEA 349

Query: 183 RRVFDLMGCRNVVSWTSIIVAH-------------------------------AQNAQGH 211
           R+VF+ M  +++VSW +I+  +                               AQN  G 
Sbjct: 350 RQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGE 409

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           E+L++F     +  + P  +  A  I ACA L  L+ G+  H  +VR G + +    +AL
Sbjct: 410 ESLKLFNRMKSEGFE-PCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + MYAKCG V  +  +F  +     V++ +MI    ++G G  +L+LF  M+   I P+ 
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDR 528

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +TF+ VL  CSH+GLV+EG ++  SM   YGI P   HY  ++D+L R G+  EA  + +
Sbjct: 529 ITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIE 588

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           ++ V+P  GP +W  LL+  R+HG +D+ ++A+ +L E   Q    YV LSN YA  G W
Sbjct: 589 TMPVEP--GPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRW 646

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           ++V  +R  M+  G+ KEPGCSW+E+ ++ + F   + +      V + L EL  KM++ 
Sbjct: 647 DDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKL 706

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY+   T  V  D+E E +E ++  HSE+LA+ FGL+ +P G T+R+ KNLR+C DCH+ 
Sbjct: 707 GYIP-DTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNA 765

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           FK +S +VER+ VVRD  RFHHF+NG CSCG++W
Sbjct: 766 FKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 218/505 (43%), Gaps = 119/505 (23%)

Query: 32  HFIQQLQEC----KHLISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
            +  QLQ+C        S+A +VH+ ++ SGF    + LN LI+ Y +      A  LFD
Sbjct: 15  QYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFD 74

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIA---------------------------------L 113
           E+ +P++V+ T+L+A + + G   +A                                 +
Sbjct: 75  EIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAI 134

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
            LF+ +L N   P+ FTF +V+ A +++  D    +QIH  +   G  +   V ++L+ +
Sbjct: 135 ELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSV 194

Query: 173 YGKC---------NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-------------- 209
           + KC         + +  AR++FD M  R+ +SWT++I  + +N +              
Sbjct: 195 FVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEK 254

Query: 210 ----------GH-------EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
                     G+       EALEMFR+  Y    + ++    SV++ACA+ G  + GK  
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKM-YLLGIQWDEFTYTSVLSACANAGFFLHGKQV 313

Query: 253 HGVVVRS----GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV----------- 297
           H  ++R+      +F+  V +AL  +Y KCG V+ + +VFN++    +V           
Sbjct: 314 HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVN 373

Query: 298 --------------------TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
                               T+T MI G A+ G G  SL LFN M S G +P D  F G 
Sbjct: 374 AGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGA 433

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           + AC+    +  G Q L +   + G          ++ M  + G ++ A+ L  ++   P
Sbjct: 434 IIACAWLAALMHGRQ-LHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTM---P 489

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVE 422
               + W  +++A   HG    A+E
Sbjct: 490 YLDSVSWNAMIAALGQHGHGAQALE 514



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 38/329 (11%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           + N +++ YV   +   A+  F+EM E N++++T +++G    G  + +L LF +M    
Sbjct: 363 SWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEG 422

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
             P ++ FA  I AC+ LA L+ G+Q+H  +   GF  +L   ++L+ MY KC  V+ A 
Sbjct: 423 FEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAH 482

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            +F  M   + VSW ++I A  Q+  G +ALE+F E   +    P++    +V++ C   
Sbjct: 483 CLFLTMPYLDSVSWNAMIAALGQHGHGAQALELF-ELMLKEDILPDRITFLTVLSTC--- 538

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
                   +H  +V  G  +      ++  +Y  C               P    Y  MI
Sbjct: 539 --------SHAGLVEEGHRY----FKSMSGLYGIC---------------PGEDHYARMI 571

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
               + G    + D+   M    ++P    +  +L  C   G +D GIQ  +   R + +
Sbjct: 572 DLLCRAGKFSEAKDMIETM---PVEPGPPIWEALLAGCRIHGNMDLGIQAAE---RLFEL 625

Query: 364 IPDAK-HYTCVVDMLGRTGRLDEAYKLAK 391
           +P     Y  + +M    GR D+  K+ K
Sbjct: 626 MPQHDGTYVLLSNMYATVGRWDDVAKVRK 654



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 170/422 (40%), Gaps = 71/422 (16%)

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
           IA  +   M+ +   P  +    +I      +DL++   +   I     Q ++V  ++L+
Sbjct: 33  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIR----QPDIVARTTLI 88

Query: 171 DMYGKCNDVDGARRVF--DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
             +    + + AR +F    +G R+ V + ++I  ++ N  G  A+E+FR+   ++  RP
Sbjct: 89  AAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL-LRNGFRP 147

Query: 229 NQHMLASVINACASLGR-LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC--------- 278
           +     SV+ A A +       +  H  VV+SG  F   V +AL+ ++ KC         
Sbjct: 148 DNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSS 207

Query: 279 -------------------------------GSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
                                          G ++ + +  + ++   VV + +MI G  
Sbjct: 208 SLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYV 267

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G    +L++F +M   GI+ ++ T+  VL AC+++G    G Q + +   +    P  
Sbjct: 268 HHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ-VHAYILRTEPRPSL 326

Query: 368 KHYTCVVDMLG----RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
                V + L     + G++DEA ++   +   P    + W  +LS     GR+D A   
Sbjct: 327 DFSLSVNNALATLYWKCGKVDEARQVFNQM---PVKDLVSWNAILSGYVNAGRIDEAKSF 383

Query: 424 SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP----------GCS 473
             ++ E N      +  + +  A  G  E    L + MK  G   EP           C+
Sbjct: 384 FEEMPERNLLT---WTVMISGLAQNGFGEESLKLFNRMKSEGF--EPCDYAFAGAIIACA 438

Query: 474 WV 475
           W+
Sbjct: 439 WL 440



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 16/144 (11%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+++++ GF S+    N LI  Y +    + A  LF  M   + VS+ +++A     G 
Sbjct: 449 LHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGH 508

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+ ML   + P+  TF TV+  CS           H  +   G +Y      S
Sbjct: 509 GAQALELFELMLKEDILPDRITFLTVLSTCS-----------HAGLVEEGHRY----FKS 553

Query: 169 LVDMYGKCNDVDGARRVFDLMGCR 192
           +  +YG C   D   R+ DL+ CR
Sbjct: 554 MSGLYGICPGEDHYARMIDLL-CR 576


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/598 (35%), Positives = 335/598 (56%), Gaps = 40/598 (6%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEPNVVSYTSLM 100
           L  L  +H++++ +G L+N   L   +        T +  + Q+ D+  +P + +  S++
Sbjct: 22  LKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMI 81

Query: 101 AGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
             Y     P  +   + K+L   +++ P+ +TF  +++ C+  A    G  +H  +   G
Sbjct: 82  RAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSA-CEAGPAVHGALIKHG 140

Query: 159 FQYNLVVCSSLVDMYG-------------------------------KCNDVDGARRVFD 187
           F+Y+  V S L+ MY                                KC D+  AR +FD
Sbjct: 141 FEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFD 200

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R+ VSW ++I  +AQ  Q  EAL +F+        + N+  + SV+ AC  LG L 
Sbjct: 201 SMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGV-KVNEVSMISVVTACTHLGALD 259

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK AH  + ++  +    + +ALVDMY KCG+V+ + KVF  ++  +V T+++ I G A
Sbjct: 260 QGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLA 319

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
             G G+  L+LF+ M   GI PN++TF+ VL  CS  G VDEG  H DSM R +GI P  
Sbjct: 320 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 379

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HY C+VD+ GR GRL+EA     ++ + P  G   WG LL+A R++  +++   AS +L
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGA--WGALLNACRMYKNMELGEFASRKL 437

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           IE   +   AYV+LSN YA  G W+ V ++R  MK  GI K PGCS +E+  + + F++G
Sbjct: 438 IEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSG 497

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +        + ++  E+ +++K  GYV     ++F D+E+E +E+ +  HSE++A+AFGL
Sbjct: 498 DKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLF-DIEEEEKEDALCKHSEKMAIAFGL 556

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            S+ +G+ IRI+KNLR+C DCHDV K+IS I ER+ +VRD NRFHHF++G CSC DFW
Sbjct: 557 FSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/446 (44%), Positives = 287/446 (64%), Gaps = 4/446 (0%)

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           + +LV  ++++  Y K   +D AR +FD +  R+ + W  +I  +AQ+   +E L +FR+
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
               ++ RPN+  + +V++AC   G L +G+  H  +  +G   N  V ++L+DMY+KCG
Sbjct: 63  M-LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCG 121

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
           S+  +  VF RISN  VV + SM+VG A +G  + +L LF EM   G +P D+TF+GVL+
Sbjct: 122 SLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLN 181

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACSH+GLV EG +   SM  +YGI P  +HY C+V++LGR G L+EAY+L K++++D D 
Sbjct: 182 ACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD- 240

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
            P+LWGTLL A RLHG + +  + +  L+  N   +  YV LSN YA AG WE V  +R+
Sbjct: 241 -PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRT 299

Query: 460 EMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTG 519
            MK +G  KEPGCS +E+ ++ + F AG+    +  E+  +L E+   +K  GY   +T 
Sbjct: 300 LMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYT-PQTD 358

Query: 520 LVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIV 579
           +V  D+ED  +E  +G+HSE+LALAFGLI+   G TI+I+KNLR+C DCH V KLIS I 
Sbjct: 359 IVLHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKIT 418

Query: 580 ERDFVVRDVNRFHHFRNGSCSCGDFW 605
            R  V+RD NRFHHF NG CSCGD+W
Sbjct: 419 GRKVVMRDRNRFHHFVNGLCSCGDYW 444



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 7/189 (3%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           +L  +I CY +      AR LFD + E + + +  ++ GY   G P   LLLF++ML   
Sbjct: 8   SLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAK 67

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V PNE T   V+ AC     L TG+ +H++IE  G   N+ V +SL+DMY KC  ++ AR
Sbjct: 68  VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDAR 127

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF---NYQSRDRPNQHMLASVINAC 240
            VF+ +  ++VV+W S++V +A +    +AL +F+E     YQ    P       V+NAC
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQ----PTDITFIGVLNAC 183

Query: 241 ASLGRLVSG 249
           +  G +  G
Sbjct: 184 SHAGLVSEG 192



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 5/172 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS I  +G   N      LI+ Y +    + AR +F+ +   +VV++ S++ GY   G 
Sbjct: 94  VHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGF 153

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCS 167
            Q AL LF++M      P + TF  V+ ACS    +  G K  ++  + +G +  +    
Sbjct: 154 SQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYG 213

Query: 168 SLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVA---HAQNAQGHEALE 215
            +V++ G+   ++ A  +   M   ++ V W +++ A   H   A G +  E
Sbjct: 214 CMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAE 265


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/545 (38%), Positives = 326/545 (59%), Gaps = 4/545 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N    N +I   +R +    A QLFD M E + +S+T+++ G    G  + A+  F++M 
Sbjct: 203 NIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMG 262

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                 ++FTF +V+ AC     L  GKQIH +I    +Q N+ V S+L+DMY KC +V 
Sbjct: 263 IEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVK 322

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A  VF  M  +NV+SWT+++V + QN    EA+ +F +   ++   P+   L SVI++C
Sbjct: 323 YAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQ-RNEIHPDDFTLGSVISSC 381

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A+L  L  G   HG  + SG      V++AL+ +Y KCGS+ ++ ++F+ +     V++T
Sbjct: 382 ANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWT 441

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +++ G A++G    ++ LF  M++ GI P+ VTFVGVL ACS +GLV++G  + + M ++
Sbjct: 442 ALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKE 501

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           + I P   HYTC++D+L R GRL+EA      +   PD   + W TLLS+ RL+G ++I 
Sbjct: 502 HRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDA--IGWATLLSSCRLNGNLEIG 559

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+  L +   Q   +Y+ LS+ YA  G+W++V  LR  M+  G+ KEPG SW++ +++
Sbjct: 560 KWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNK 619

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F A +       ++ + L  L  KM E GYV   +  V  DVE   + +++  HSE+
Sbjct: 620 VHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMS-FVLHDVEKSEKIKMLNHHSEK 678

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AFGL+ IP G+ IR++KNLR+C DCH+  K IS I +R+ +VRD  RFH F++G CS
Sbjct: 679 LAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCS 738

Query: 601 CGDFW 605
           CGDFW
Sbjct: 739 CGDFW 743



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 193/390 (49%), Gaps = 37/390 (9%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N F+ N L++ Y +L   Q  +++FD M   +VVS+ SL++GY   G    ++ ++  ML
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 121 GN-LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
            +  V  N  TF+T++   S    +  G+QIH  I  FG+Q  L V S LVDMY K   +
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 180 DGARRVFD----------------LMGCRNVV---------------SWTSIIVAHAQNA 208
           + A R+F+                L+ CR +V               SWT+II    QN 
Sbjct: 190 NDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNG 249

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EA++ F+E   +     +Q    SV+ AC     L  GK  H  ++R+  + N  V 
Sbjct: 250 LFKEAVDKFKEMGIEGFCM-DQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVG 308

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           SAL+DMY KC +V Y++ VF ++ + +V+++T+M+VG  + G    ++ +F +M    I 
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+D T   V+ +C++   ++EG Q         G+I        ++ + G+ G L+ A++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQ 427

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           L   +++  +   + W  L+S     G+ +
Sbjct: 428 LFHEMKIRDE---VSWTALVSGYAQFGKAN 454



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 176/393 (44%), Gaps = 39/393 (9%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSN 61
           LT+N +F  A            C  +  F   L  C   ++L     +H+ I+++ +  N
Sbjct: 245 LTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
            F  + L++ Y + +  + A  +F +M   NV+S+T+++ GY   G  + A+ +F  M  
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           N + P++FT  +VI +C+ LA L  G Q H      G    + V ++L+ +YGKC  ++ 
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEH 424

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           A ++F  M  R+ VSWT+++  +AQ  + +E + +F E        P+      V++AC+
Sbjct: 425 AHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLF-ETMLAHGIVPDGVTFVGVLSACS 483

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
             G +  G      +V+                              +RI+ P    YT 
Sbjct: 484 RAGLVEKGYHYFECMVKE-----------------------------HRIT-PIPDHYTC 513

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI   ++ G    + +  N+M      P+ + +  +L +C  +G ++ G    +S+++  
Sbjct: 514 MIDLLSRAGRLEEAKNFINQM---PFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLE 570

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
              P +  Y  +  +    G+ D+  KL K ++
Sbjct: 571 PQNPAS--YILLSSIYAAKGKWDDVAKLRKGMR 601



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 185/457 (40%), Gaps = 93/457 (20%)

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +++  L  P  F +  +I     L DL   + +  HI     Q NL   ++L+  Y K  
Sbjct: 30  RIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP----QPNLFSWNTLLSAYSKLG 85

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            +   +RVFD M   +VVSW S++  +A N    E++ ++           N+   ++++
Sbjct: 86  YLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTML 145

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
              ++ G +  G+  HG + + G +    V S LVDMYAK G +N ++++F  I   ++V
Sbjct: 146 ILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIV 205

Query: 298 TY-------------------------------TSMIVGAAKYGLGRFSLDLFNEMISRG 326
            Y                               T++I G  + GL + ++D F EM   G
Sbjct: 206 VYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEG 265

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQ------------------HLDSMYRK-------Y 361
              +  TF  VL AC     +DEG Q                   L  MY K        
Sbjct: 266 FCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAE 325

Query: 362 GIIPDAKH-----YTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLSASRL 413
            +    +H     +T ++   G+ G  +EA ++   +Q   + PD   L  G+++S+   
Sbjct: 326 AVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTL--GSVISSCAN 383

Query: 414 HGRVDIAVEASNQLIESNQ----QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
              ++   +   Q + S       V+NA +TL   Y   G  E+ H L  EMK       
Sbjct: 384 LASLEEGAQFHGQALASGLICFVTVSNALITL---YGKCGSLEHAHQLFHEMK------- 433

Query: 470 PGCSWVEIRDQT--YAFYAGNALFERGSEVLSLLREL 504
                  IRD+    A  +G A F + +E +SL   +
Sbjct: 434 -------IRDEVSWTALVSGYAQFGKANETISLFETM 463


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 337/571 (59%), Gaps = 11/571 (1%)

Query: 35  QQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           Q L  C+       VH+  ++ GF         +++ Y +      AR++FD M + N V
Sbjct: 341 QALGACRE------VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSV 394

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           S+ +++ GY   G    AL LF++M+G  V   + +    + AC  L  L  G+++H  +
Sbjct: 395 SWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELL 454

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              G + N+ V ++L+ MY KC   D A +VFD +G +  VSW ++I+   QN    +A+
Sbjct: 455 VRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAV 514

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
            +F     ++  +P+   L S+I A A +   +  +  HG  +R   + +  V +AL+DM
Sbjct: 515 RLFSRMQLENV-KPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDM 573

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAKCG V+ +  +FN   +  V+T+ +MI G   +G G+ +++LF EM S G  PN+ TF
Sbjct: 574 YAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTF 633

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           + VL ACSH+GLVDEG ++  SM   YG+ P  +HY  +VD+LGR G+L EA+   + + 
Sbjct: 634 LSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMP 693

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
           ++P  G  ++G +L A +LH  V++A E++ ++ E   +    +V L+N YA A  W++V
Sbjct: 694 MEP--GISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDV 751

Query: 455 HSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYV 514
             +R+ M++ G+ K PG S V+++++ + FY+G+   ++  ++ + L +L  ++K  GYV
Sbjct: 752 ARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYV 811

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
                +   DVED+ + +++  HSE+LA+A+GLI    G TI+I KNLR+C+DCH+  KL
Sbjct: 812 PDTDSI--HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKL 869

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS +  R+ ++RD+ RFHHF++G CSCGD+W
Sbjct: 870 ISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 207/425 (48%), Gaps = 32/425 (7%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C     LA+   VH+++   G          L N Y + ++   AR++FD M 
Sbjct: 228 FTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMP 287

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGK 148
             + V++ +L+AGY   G  + A+ +  +M   +   P+  T  +V+ AC+    L   +
Sbjct: 288 ARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACR 347

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           ++H      GF   + V ++++D+Y KC  VD AR+VFD M  RN VSW ++I  +A+N 
Sbjct: 348 EVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENG 407

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL +F+    +  D  +  +LA+ ++AC  LG L  G+  H ++VR G E N  V 
Sbjct: 408 DATEALALFKRMVGEGVDVTDVSVLAA-LHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +AL+ MY KC   + + +VF+ +   + V++ +MI+G  + G    ++ LF+ M    +K
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQ-----------HLDSMYRKYGIIPDAKHYTCVVDML 377
           P+  T V ++ A +    + + +Q           HLD          D    T ++DM 
Sbjct: 527 PDSFTLVSIIPALAD---ISDPLQARWIHGYSIRLHLDQ---------DVYVLTALIDMY 574

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            + GR+  A  L  S +   D   + W  ++     HG   +AVE   ++ +S+ +V N 
Sbjct: 575 AKCGRVSIARSLFNSAR---DRHVITWNAMIHGYGSHGSGKVAVELFEEM-KSSGKVPNE 630

Query: 438 YVTLS 442
              LS
Sbjct: 631 TTFLS 635



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 139/260 (53%), Gaps = 1/260 (0%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF +++K C+  ADL TG+ +H  +   G     +  ++L +MY KC     ARRVFD M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             R+ V+W +++  +A+N     A+ M      +  +RP+   L SV+ ACA    L + 
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  H   VR G +    V++A++D+Y KCG+V+ + KVF+ + + + V++ +MI G A+ 
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G    +L LF  M+  G+   DV+ +  LHAC   G +DEG + +  +  + G+  +   
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG-RRVHELLVRIGLESNVNV 465

Query: 370 YTCVVDMLGRTGRLDEAYKL 389
              ++ M  +  R D A ++
Sbjct: 466 MNALITMYCKCKRTDLAAQV 485



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 5/228 (2%)

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL  F   +  S   P      S++  CA+   L +G+  H  +   G     + A+AL 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPND 331
           +MYAKC     + +VF+R+     V + +++ G A+ GL   ++ +   M    G +P+ 
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VT V VL AC+ +  +    + + +   + G        T ++D+  + G +D A K+  
Sbjct: 328 VTLVSVLPACADAQALG-ACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD 386

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
            +Q   D   + W  ++     +G    A+    +++     V +  V
Sbjct: 387 GMQ---DRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV 431



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 1/161 (0%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           S +  +N +    T    I  L +    +    +H   ++     + + L  LI+ Y + 
Sbjct: 518 SRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
            +  +AR LF+   + +V+++ +++ GY + G  ++A+ LF++M  +   PNE TF +V+
Sbjct: 578 GRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVL 637

Query: 136 KACSMLADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGK 175
            ACS    +  G++  + + E +G +  +    ++VD+ G+
Sbjct: 638 SACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGR 678


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/560 (38%), Positives = 325/560 (58%), Gaps = 7/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS +   GF   T   N L++ Y +      AR +F+ +LE  VVS+++++  Y   G+
Sbjct: 7   IHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGR 66

Query: 109 PQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG--FQYNLVV 165
            Q ALLLF +M  +  V PN  TF  V  AC ++ DL  G++IH      G     N ++
Sbjct: 67  GQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAIL 126

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L++MY +C  ++ AR+VFD M   +  SWTS+I A  +N +  EALE+F   N +  
Sbjct: 127 ENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGI 186

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P    LASV+NACA  G L  GK  H  +  SG   + +  +AL+DMYAKCGS+  S 
Sbjct: 187 P-PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSS 245

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF  +   + V++T+MI   A++G G  +L+LF EM   G+  +  TF+ VL ACSH+G
Sbjct: 246 KVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAG 305

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+ E ++   SM   Y I P   HY   +D +GR GRL +A +L  S+   P+   L W 
Sbjct: 306 LIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPE--TLTWK 363

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           TLL+A R+H + + A + +  L +   + + AY  L N YA  G + +   +R  M   G
Sbjct: 364 TLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRG 423

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K PG S++E++++ + F AG+       E+L  L +L  +M+E GYV   T  V   V
Sbjct: 424 LKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYV-PNTKDVLHAV 482

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            +E +E+++GLHSE+LA+AFGLI+ P G  + I+KNLR+C DCH   K+I+ I+ R  VV
Sbjct: 483 NEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVV 542

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD +RFHHF +G CSC D+W
Sbjct: 543 RDTHRFHHFEDGQCSCKDYW 562



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 145/278 (52%), Gaps = 6/278 (2%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G++IH+ +   GF    +  + LV MY KC  +D AR +F+ +  R VVSW+++I A+A 
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFN 264
           + +G EAL +F       R  PN      V NAC  +  L  G+  H + + SG     N
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
            ++ +AL++MY +CGS+  + KVF+ + +P   ++TSMI    +      +L+LF+ M  
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNL 183

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            GI P  VT   VL+AC+ SG +  G Q + S     G        T ++DM  + G L+
Sbjct: 184 EGIPPTSVTLASVLNACACSGALKVGKQ-IHSRLDASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            + K+  +++       + W  +++A   HG+ D A+E
Sbjct: 243 CSSKVFTAMETR---NSVSWTAMIAALAQHGQGDEALE 277


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/609 (36%), Positives = 337/609 (55%), Gaps = 43/609 (7%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL------KKTQV---ARQLFDE 87
           LQ C     L  +H  +L++  +S+ F  + L+   + +      K T +   A  +F +
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQ 78

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +  PN+  +  L+  +    +P  A   + +ML + +WP+  TF  +IKA + +  ++ G
Sbjct: 79  IQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVG 138

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +Q H+ I  FGFQ ++ V +SLV MY  C  +  A R+F  M  R+VVSWTS++  + + 
Sbjct: 139 EQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKC 198

Query: 208 AQGHEALEMFRE----------------------------FNYQSRDR--PNQHMLASVI 237
               +A EMF E                            F    R+    N+ ++ SVI
Sbjct: 199 GMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVI 258

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           ++CA LG L  G+ AH  VV+S    N ++ +ALVDMY +CG +  + +VF  + +   +
Sbjct: 259 SSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSL 318

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           +++S+I G A +G    ++  F++M+  G  P D+T   VL ACSH GLVD+G++  ++M
Sbjct: 319 SWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENM 378

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R YGI P  +HY C+VDMLGR G+L EA      + V P+  P+L G LL A +++   
Sbjct: 379 KRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPN-APIL-GALLGACKIYKNT 436

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++A    N LIE   + +  YV LSN YA AG+WE + SLR  MK   + K PG S +EI
Sbjct: 437 EVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEI 496

Query: 478 RDQTYAFYAG-NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
             +   F  G +       ++  L  E+  K++  GY  G TG  F DV++E +E  + +
Sbjct: 497 DGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGY-KGNTGDAFFDVDEEEKETAIHM 555

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+A+G++    G TIRI+KNLR+C DCH   KLIS++  R+F+VRD NRFHHFRN
Sbjct: 556 HSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRN 615

Query: 597 GSCSCGDFW 605
           G CSC D+W
Sbjct: 616 GLCSCRDYW 624


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/557 (35%), Positives = 321/557 (57%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +HS+I+K+ F  N +  + LI+ Y +L K   A  +       +VVS+T+++AGY     
Sbjct: 512  IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 571

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL  F++ML   +  +E      + AC+ L  L  G+QIH      GF  +L   ++
Sbjct: 572  DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 631

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            LV +Y +C  ++ +   F+     + ++W +++    Q+    EAL +F   N +  D  
Sbjct: 632  LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDN- 690

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            N     S + A +    +  GK  H V+ ++G +    V +AL+ MYAKCGS++ ++K F
Sbjct: 691  NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF 750

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +S  + V++ ++I   +K+G G  +LD F++MI   ++PN VT VGVL ACSH GLVD
Sbjct: 751  LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 810

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            +GI + +SM  +YG+ P  +HY CVVDML R G L  A +  + + + PD   L+W TLL
Sbjct: 811  KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA--LVWRTLL 868

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            SA  +H  ++I   A++ L+E   + +  YV LSN YA++ +W+     R +MK  G+ K
Sbjct: 869  SACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKK 928

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            EPG SW+E+++  ++FY G+       E+    ++L ++  E GYV     L+  +++ E
Sbjct: 929  EPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLL-NELQHE 987

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             ++ I+ +HSE+LA++FGL+S+P  + I +MKNLR+C DCH   K +S +  R+ +VRD 
Sbjct: 988  QKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDA 1047

Query: 589  NRFHHFRNGSCSCGDFW 605
             RFHHF  G+CSC D+W
Sbjct: 1048 YRFHHFEGGACSCKDYW 1064



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 216/448 (48%), Gaps = 15/448 (3%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T   F   L  CK + SL     +H  +LK GF S+T+  N L++ Y  L     A  +F
Sbjct: 287 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 346

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
             M + + V+Y +L+ G    G  + A+ LF++M  + + P+  T A+++ ACS    L 
Sbjct: 347 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 406

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            G+Q+H +    GF  N  +  +L+++Y KC D++ A   F      NVV W  ++VA+ 
Sbjct: 407 RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 466

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
                  +  +FR+   +    PNQ+   S++  C  LG L  G+  H  ++++  + N 
Sbjct: 467 LLDDLRNSFRIFRQMQIE-EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V S L+DMYAK G ++ +  +  R +   VV++T+MI G  +Y     +L  F +M+ R
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           GI+ ++V     + AC+    + EG Q + +     G   D      +V +  R G+++E
Sbjct: 586 GIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEE 644

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA----VEASNQLIESNQQVANAYVTL 441
           +Y   +  +    G  + W  L+S  +  G  + A    V  + + I++N     + V  
Sbjct: 645 SYLAFEQTEA---GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKE 469
           ++  A   + + VH++   + +TG   E
Sbjct: 702 ASETANMKQGKQVHAV---ITKTGYDSE 726



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 188/393 (47%), Gaps = 7/393 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+   K GF SN      L+N Y +    + A   F E    NVV +  ++  Y  +  
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  +F++M    + PN++T+ +++K C  L DL  G+QIH+ I    FQ N  VCS 
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +D A  +      ++VVSWT++I  + Q     +AL  FR+       R 
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM-LDRGIRS 589

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++  L + ++ACA L  L  G+  H     SG   +    +ALV +Y++CG +  S   F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            +      + + +++ G  + G    +L +F  M   GI  N+ TF   + A S +  + 
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q + ++  K G   + +    ++ M  + G + +A K    +    +   + W  ++
Sbjct: 710 QGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE---VSWNAII 765

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +A   HG    A+++ +Q+I SN  V   +VTL
Sbjct: 766 NAYSKHGFGSEALDSFDQMIHSN--VRPNHVTL 796



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 187/365 (51%), Gaps = 10/365 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS+ILK G  SN      L + Y+       A ++FDEM E  + ++  ++    +   
Sbjct: 107 LHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNL 166

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKAC---SMLADLITGKQIHTHIETFGFQYNLVV 165
                 LF +M+   V PNE TF+ V++AC   S+  D++  +QIH  I   G + + VV
Sbjct: 167 IGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDSTVV 224

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C+ L+D+Y +   VD ARRVFD +  ++  SW ++I   ++N    EA+ +F +  Y   
Sbjct: 225 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM-YVLG 283

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P  +  +SV++AC  +  L  G+  HG+V++ G   +  V +ALV +Y   G++  ++
Sbjct: 284 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE 343

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ +S    VTY ++I G ++ G G  +++LF  M   G++P+  T   ++ ACS  G
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G Q L +   K G   + K    ++++  +   ++ A       +V+     +LW 
Sbjct: 404 TLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE---NVVLWN 459

Query: 406 TLLSA 410
            +L A
Sbjct: 460 VMLVA 464



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 185/382 (48%), Gaps = 7/382 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ IL  G   +T   N LI+ Y R     +AR++FD +   +  S+ ++++G      
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF  M    + P  + F++V+ AC  +  L  G+Q+H  +   GF  +  VC++
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 328

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV +Y    ++  A  +F  M  R+ V++ ++I   +Q   G +A+E+F+  +    + P
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE-P 387

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + LAS++ AC++ G L  G+  H    + G   N+ +  AL+++YAKC  +  +   F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                 +VV +  M+V        R S  +F +M    I PN  T+  +L  C   G ++
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-WGTL 407
            G + + S   K     +A   + ++DM  + G+LD A+     I +   G  ++ W T+
Sbjct: 508 LG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAW----DILIRFAGKDVVSWTTM 562

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           ++    +   D A+    Q+++
Sbjct: 563 IAGYTQYNFDDKALTTFRQMLD 584



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 154/376 (40%), Gaps = 49/376 (13%)

Query: 126 PNEFTFATVIKAC-SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           PN  T   +++ C      L  G+++H+ I   G   N  +   L D Y    D+ GA +
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC--AS 242
           VFD M  R + +W  +I   A      E   +F     ++   PN+   + V+ AC   S
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEACRGGS 200

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           +   V  ++ H  ++  G   + VV + L+D+Y++ G V+ + +VF+ +      ++ +M
Sbjct: 201 VAFDVVEQI-HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ---------- 352
           I G +K      ++ LF +M   GI P    F  VL AC     ++ G Q          
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319

Query: 353 --------HLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKS 392
                    L S+Y   G +  A+H            Y  +++ L + G  ++A +L K 
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379

Query: 393 IQVD---PDGGPLLW--------GTLLSASRLHGRVDIAVEASNQLIES---NQQVANAY 438
           + +D   PD   L          GTL    +LH        ASN  IE    N     A 
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 439 VTLSNTYALAGEWENV 454
           +  +  Y L  E ENV
Sbjct: 440 IETALDYFLETEVENV 455



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 227 RPNQHMLASVINAC-ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           RPN   L  ++  C  + G L  G+  H  +++ G + N  ++  L D Y   G +  + 
Sbjct: 81  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ +   ++ T+  MI   A   L      LF  M+S  + PN+ TF GVL AC    
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           +  + ++ + +     G+         ++D+  R G +D A ++   +++
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 250


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/552 (37%), Positives = 329/552 (59%), Gaps = 4/552 (0%)

Query: 54  LKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
           +K GF S+ + +  L   Y +  + + AR LF ++ +P++VSY ++++GY    + + ++
Sbjct: 234 MKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSV 293

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
            LF+++L +    N  +   +I        L   + IH      G   N  V ++L  +Y
Sbjct: 294 RLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            + N+++ AR +FD    +++ SW ++I  +AQN    +A+ +F+E   +   RPN   +
Sbjct: 354 SRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ-KCEVRPNPVTV 412

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            S+++ACA LG L  GK  H ++ R   E N  V++AL+DMYAKCGS+  + ++F+ +  
Sbjct: 413 TSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPE 472

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
            + VT+ +MI G   +G G  +L+LFNEM+   + P  VTF+ VL+ACSH+GLV EG + 
Sbjct: 473 KNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEI 532

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
             SM   +G  P  +HY C+VD+LGR G LD+A    + + V+P  GP +WG LL A  +
Sbjct: 533 FRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEP--GPPVWGALLGACMI 590

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           H   ++A  AS++L E + Q    YV LSN Y+    +    S+R  +KR  + K PGC+
Sbjct: 591 HKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCT 650

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
            +E+ +  + F +G+    + + + ++L +L  KM+E G+   +TG    DVE+E +E +
Sbjct: 651 LIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGF-QTETGTALHDVEEEEKELM 709

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           V +HSE+LA+AFGLI+   G  IRI+KNLR+C DCH+  K IS I ER  VVRD NRFHH
Sbjct: 710 VKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHH 769

Query: 594 FRNGSCSCGDFW 605
           F++G CSCGD+W
Sbjct: 770 FKDGICSCGDYW 781



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 184/375 (49%), Gaps = 5/375 (1%)

Query: 56  SGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL 115
           +GF S+ F  + ++ CY +  +   AR++FD MLE + V + ++++G +       A+L+
Sbjct: 135 AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILI 194

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           F  M+   +  +  T A V+   + L DL  G  I       GF  +  V + L  +Y K
Sbjct: 195 FGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSK 254

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C +++ AR +F  +G  ++VS+ ++I  +  N +   ++ +F+E    S ++ N   +  
Sbjct: 255 CGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL-LVSGEKVNSSSIVG 313

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           +I      G L   +  HG   +SG   N  V++AL  +Y++   +  +  +F+  S  S
Sbjct: 314 LIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKS 373

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           + ++ +MI G A+ GL   ++ LF EM    ++PN VT   +L AC+  G +  G + + 
Sbjct: 374 LASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVH 432

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            +  +     +    T ++DM  + G + EA +L     + P+   + W  ++S   LHG
Sbjct: 433 DLINRESFESNIFVSTALIDMYAKCGSITEAQRL---FSMMPEKNAVTWNAMISGYGLHG 489

Query: 416 RVDIAVEASNQLIES 430
               A+   N+++ S
Sbjct: 490 YGHEALNLFNEMLHS 504



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R    T+  F+  +     L  L   H++I+ +G  ++  T+  L +    LK    A  
Sbjct: 4   RGIASTRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASL 63

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLA 142
           LF  +  P++  Y  L+  +     P  A+ L+  +  +  + P+ FT+A VI   S L 
Sbjct: 64  LFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLG 123

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
             +            GF  +L V S++V  Y K + V  AR+VFD M  R+ V W +++ 
Sbjct: 124 LGLLLHAHSI---VAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVS 180

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
              +N+   EA+ +F +   +     +   +A+V+   A L  L  G     + ++ G  
Sbjct: 181 GLVKNSCFDEAILIFGDM-VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFH 239

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            +  V + L  +Y+KCG +  +  +F +I  P +V+Y +MI G         S+ LF E+
Sbjct: 240 SHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL 299

Query: 323 ISRGIKPNDVTFVGVL 338
           +  G K N  + VG++
Sbjct: 300 LVSGEKVNSSSIVGLI 315


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 333/576 (57%), Gaps = 35/576 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N    N +I    ++ +   A +LF+EM E ++VS+++L++GY   G  + AL++F +M 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG------ 174
            N +  +E    +V+ AC+ L+ + TGK IH  +   G +  + + ++L+ MY       
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 175 -------------------------KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
                                    KC  V+ AR +FD+M  +++VSW+++I  +AQ+  
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDC 416

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E L +F E     + RP++ +L SVI+AC  L  L  GK  H  + ++G + N ++ +
Sbjct: 417 FSETLALFHEMQL-GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGT 475

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L+DMY KCG V  + +VFN +    V ++ ++I+G A  GL   SLD+F+EM + G+ P
Sbjct: 476 TLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIP 535

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++TF+GVL AC H GLVDEG  H  SM  K+GI P+ KHY C+VD+LGR G L+EA KL
Sbjct: 536 NEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKL 595

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            +S+ + PD     WG LL A + HG  ++      +LIE        +V LSN +A  G
Sbjct: 596 IESMPMAPDVAT--WGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKG 653

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +WE+V  +R  MK+ G+ K PGCS +E     + F AG+      ++V  +L E+ +++K
Sbjct: 654 DWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLK 713

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GY    T  V +D+++E +E  +  HSE+LA+AFGL++I     IRIMKNLR+C DCH
Sbjct: 714 MEGY-APDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCH 772

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              KLIS    R+ VVRD +RFH+F+ G+CSC D+W
Sbjct: 773 TAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 226/490 (46%), Gaps = 106/490 (21%)

Query: 36  QLQECKHLISLASVHSEILKSGFLSNTFTLNHLI-----NCYVRLKKTQVARQLFDEMLE 90
            L  C +L     + S+++ +GF+S+TF  + L+     + ++ L     + Q+FD +  
Sbjct: 47  HLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGL---DYSLQIFDRIEN 103

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N   + ++M  YI     + ALLL++ M+ N V P+ +T+  V++AC++      GK+I
Sbjct: 104 SNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEI 163

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKC-------------------------------NDV 179
           H H+   GF  ++ V ++L++MY  C                                DV
Sbjct: 164 HDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDV 223

Query: 180 DGARRVFDLMGCRNVV-------------------------------SWTSIIVAHAQNA 208
           + A+ +FD M  RN+V                               SW+++I  + QN 
Sbjct: 224 EEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNG 283

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL MF E N     R ++ ++ SV++ACA L  + +GK+ HG+V+R G E    + 
Sbjct: 284 MYEEALVMFIEMNANGM-RLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQ 342

Query: 269 SALVDMYA-------------------------------KCGSVNYSDKVFNRISNPSVV 297
           +AL+ MY+                               KCGSV  +  +F+ +    +V
Sbjct: 343 NALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIV 402

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           +++++I G A++     +L LF+EM    I+P++   V V+ AC+H   +D+G + + + 
Sbjct: 403 SWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAY 461

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            RK G+  +    T ++DM  + G ++ A ++   ++   + G   W  L+    ++G V
Sbjct: 462 IRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME---EKGVSSWNALIIGLAVNGLV 518

Query: 418 DIAVEASNQL 427
           + +++  +++
Sbjct: 519 ERSLDMFSEM 528



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 16/249 (6%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            +  +  C HL +L     VH+ I K+G   N      L++ Y++    + A ++F+ M 
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME 498

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK- 148
           E  V S+ +L+ G    G  + +L +F +M  N V PNE TF  V+ AC  +  +  G+ 
Sbjct: 499 EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRC 558

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHAQN 207
              + IE  G + N+     +VD+ G+   ++ A ++ + M    +V +W +++ A  ++
Sbjct: 559 HFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKH 618

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL-----VSGKVA-HGVVVRSGC 261
                   + R+      D    H+L S  N  AS G       V G +   GVV   GC
Sbjct: 619 GDTEMGERVGRKLIELQPDHDGFHVLLS--NIFASKGDWEDVLEVRGMMKQQGVVKTPGC 676

Query: 262 ---EFNDVV 267
              E N VV
Sbjct: 677 SLIEANGVV 685


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/557 (35%), Positives = 321/557 (57%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +HS+I+K+ F  N +  + LI+ Y +L K   A  +       +VVS+T+++AGY     
Sbjct: 472  IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 531

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL  F++ML   +  +E      + AC+ L  L  G+QIH      GF  +L   ++
Sbjct: 532  DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 591

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            LV +Y +C  ++ +   F+     + ++W +++    Q+    EAL +F   N +  D  
Sbjct: 592  LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDN- 650

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            N     S + A +    +  GK  H V+ ++G +    V +AL+ MYAKCGS++ ++K F
Sbjct: 651  NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF 710

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +S  + V++ ++I   +K+G G  +LD F++MI   ++PN VT VGVL ACSH GLVD
Sbjct: 711  LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 770

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            +GI + +SM  +YG+ P  +HY CVVDML R G L  A +  + + + PD   L+W TLL
Sbjct: 771  KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA--LVWRTLL 828

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            SA  +H  ++I   A++ L+E   + +  YV LSN YA++ +W+     R +MK  G+ K
Sbjct: 829  SACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKK 888

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            EPG SW+E+++  ++FY G+       E+    ++L ++  E GYV     L+  +++ E
Sbjct: 889  EPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLL-NELQHE 947

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             ++ I+ +HSE+LA++FGL+S+P  + I +MKNLR+C DCH   K +S +  R+ +VRD 
Sbjct: 948  QKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDA 1007

Query: 589  NRFHHFRNGSCSCGDFW 605
             RFHHF  G+CSC D+W
Sbjct: 1008 YRFHHFEGGACSCKDYW 1024



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 216/448 (48%), Gaps = 15/448 (3%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T   F   L  CK + SL     +H  +LK GF S+T+  N L++ Y  L     A  +F
Sbjct: 247 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 306

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
             M + + V+Y +L+ G    G  + A+ LF++M  + + P+  T A+++ ACS    L 
Sbjct: 307 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 366

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            G+Q+H +    GF  N  +  +L+++Y KC D++ A   F      NVV W  ++VA+ 
Sbjct: 367 RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 426

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
                  +  +FR+   +    PNQ+   S++  C  LG L  G+  H  ++++  + N 
Sbjct: 427 LLDDLRNSFRIFRQMQIEEI-VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V S L+DMYAK G ++ +  +  R +   VV++T+MI G  +Y     +L  F +M+ R
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           GI+ ++V     + AC+    + EG Q + +     G   D      +V +  R G+++E
Sbjct: 546 GIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEE 604

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA----VEASNQLIESNQQVANAYVTL 441
           +Y   +  +    G  + W  L+S  +  G  + A    V  + + I++N     + V  
Sbjct: 605 SYLAFEQTEA---GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKE 469
           ++  A   + + VH++   + +TG   E
Sbjct: 662 ASETANMKQGKQVHAV---ITKTGYDSE 686



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 188/393 (47%), Gaps = 7/393 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+   K GF SN      L+N Y +    + A   F E    NVV +  ++  Y  +  
Sbjct: 371 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 430

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  +F++M    + PN++T+ +++K C  L DL  G+QIH+ I    FQ N  VCS 
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 490

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K   +D A  +      ++VVSWT++I  + Q     +AL  FR+       R 
Sbjct: 491 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM-LDRGIRS 549

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++  L + ++ACA L  L  G+  H     SG   +    +ALV +Y++CG +  S   F
Sbjct: 550 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 609

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            +      + + +++ G  + G    +L +F  M   GI  N+ TF   + A S +  + 
Sbjct: 610 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 669

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q + ++  K G   + +    ++ M  + G + +A K    +    +   + W  ++
Sbjct: 670 QGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE---VSWNAII 725

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +A   HG    A+++ +Q+I SN  V   +VTL
Sbjct: 726 NAYSKHGFGSEALDSFDQMIHSN--VRPNHVTL 756



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 187/365 (51%), Gaps = 10/365 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS+ILK G  SN      L + Y+       A ++FDEM E  + ++  ++    +   
Sbjct: 67  LHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNL 126

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKAC---SMLADLITGKQIHTHIETFGFQYNLVV 165
                 LF +M+   V PNE TF+ V++AC   S+  D++  +QIH  I   G + + VV
Sbjct: 127 IGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDSTVV 184

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C+ L+D+Y +   VD ARRVFD +  ++  SW ++I   ++N    EA+ +F +  Y   
Sbjct: 185 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM-YVLG 243

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P  +  +SV++AC  +  L  G+  HG+V++ G   +  V +ALV +Y   G++  ++
Sbjct: 244 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE 303

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ +S    VTY ++I G ++ G G  +++LF  M   G++P+  T   ++ ACS  G
Sbjct: 304 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 363

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G Q L +   K G   + K    ++++  +   ++ A       +V+     +LW 
Sbjct: 364 TLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE---NVVLWN 419

Query: 406 TLLSA 410
            +L A
Sbjct: 420 VMLVA 424



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 185/382 (48%), Gaps = 7/382 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ IL  G   +T   N LI+ Y R     +AR++FD +   +  S+ ++++G      
Sbjct: 169 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 228

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF  M    + P  + F++V+ AC  +  L  G+Q+H  +   GF  +  VC++
Sbjct: 229 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 288

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV +Y    ++  A  +F  M  R+ V++ ++I   +Q   G +A+E+F+  +    + P
Sbjct: 289 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE-P 347

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + LAS++ AC++ G L  G+  H    + G   N+ +  AL+++YAKC  +  +   F
Sbjct: 348 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 407

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                 +VV +  M+V        R S  +F +M    I PN  T+  +L  C   G ++
Sbjct: 408 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 467

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-WGTL 407
            G + + S   K     +A   + ++DM  + G+LD A+     I +   G  ++ W T+
Sbjct: 468 LG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAW----DILIRFAGKDVVSWTTM 522

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           ++    +   D A+    Q+++
Sbjct: 523 IAGYTQYNFDDKALTTFRQMLD 544



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 154/376 (40%), Gaps = 49/376 (13%)

Query: 126 PNEFTFATVIKAC-SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           PN  T   +++ C      L  G+++H+ I   G   N  +   L D Y    D+ GA +
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 101

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC--AS 242
           VFD M  R + +W  +I   A      E   +F     ++   PN+   + V+ AC   S
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEACRGGS 160

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           +   V  ++ H  ++  G   + VV + L+D+Y++ G V+ + +VF+ +      ++ +M
Sbjct: 161 VAFDVVEQI-HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 219

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ---------- 352
           I G +K      ++ LF +M   GI P    F  VL AC     ++ G Q          
Sbjct: 220 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 279

Query: 353 --------HLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKS 392
                    L S+Y   G +  A+H            Y  +++ L + G  ++A +L K 
Sbjct: 280 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 339

Query: 393 IQVD---PDGGPLLW--------GTLLSASRLHGRVDIAVEASNQLIES---NQQVANAY 438
           + +D   PD   L          GTL    +LH        ASN  IE    N     A 
Sbjct: 340 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 439 VTLSNTYALAGEWENV 454
           +  +  Y L  E ENV
Sbjct: 400 IETALDYFLETEVENV 415



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 227 RPNQHMLASVINAC-ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           RPN   L  ++  C  + G L  G+  H  +++ G + N  ++  L D Y   G +  + 
Sbjct: 41  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 100

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ +   ++ T+  MI   A   L      LF  M+S  + PN+ TF GVL AC    
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 160

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           +  + ++ + +     G+         ++D+  R G +D A ++   +++
Sbjct: 161 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 210



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 12/193 (6%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R+   ++  T    ++   E  ++     VH+ I K+G+ S T   N LI+ Y +   
Sbjct: 643 MNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGS 702

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              A + F E+   N VS+ +++  Y   G    AL  F +M+ + V PN  T   V+ A
Sbjct: 703 ISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSA 762

Query: 138 CSMLADLITGKQIHTHIETFGFQYNL------VVCSSLVDMYGKCNDVDGARRVFDLMGC 191
           CS +   +  K I  + E+   +Y L       VC  +VDM  +   +  A+     M  
Sbjct: 763 CSHIG--LVDKGI-AYFESMNSEYGLSPKPEHYVC--VVDMLTRAGLLSRAKEFIQEMPI 817

Query: 192 R-NVVSWTSIIVA 203
           + + + W +++ A
Sbjct: 818 KPDALVWRTLLSA 830


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 343/607 (56%), Gaps = 38/607 (6%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA-------- 81
           F   LQ C  L S++    +HS I  SG  S+ F  NHL+N Y +  + Q A        
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 82  -----------------------RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
                                  + LFDEM + NV ++ +++ G       + ALLLF +
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M      P+E++  +V++ C+ L  L+ G+Q+H ++   GF+ NLVV  SL  MY K   
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGS 251

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +    RV + M   ++V+W +++   AQ       L+ +         RP++    SVI+
Sbjct: 252 MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGF-RPDKITFVSVIS 310

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           +C+ L  L  GK  H   V++G      V S+LV MY++CG +  S K F       VV 
Sbjct: 311 SCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVL 370

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           ++SMI     +G G  ++ LFNEM    +  N++TF+ +L+ACSH GL D+G+   D M 
Sbjct: 371 WSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMV 430

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           +KYG+    +HYTC+VD+LGR+G L+EA  + +S+ V  D   ++W TLLSA ++H   +
Sbjct: 431 KKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADA--IIWKTLLSACKIHKNAE 488

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           IA   +++++  + Q + +YV L+N Y+ A  W+NV  +R  MK   + KEPG SWVE++
Sbjct: 489 IARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVK 548

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           +Q + F+ G+    +  E+   L EL  ++K +GYV   T  V  D+++E +E+I+  HS
Sbjct: 549 NQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYV-PDTSSVLHDMDNEEKEQILRHHS 607

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AF L++ P+G+ IR+MKNLR+C DCH   K IS+I + + +VRD +RFHHF+NG+
Sbjct: 608 EKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGT 667

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 668 CSCGDYW 674



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 184/390 (47%), Gaps = 48/390 (12%)

Query: 97  TSLMAGYINMGQPQIALLL--------FQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
           T    G  + G  Q A L         F+  L   +W     F+ +++AC  L  +  GK
Sbjct: 31  THFQNGRFSDGNEQFATLCSKGHIREAFESFLSE-IWAEPRLFSNLLQACIPLKSVSLGK 89

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGK---------------------CN---------- 177
           Q+H+ I T G   +  + + L+++Y K                     CN          
Sbjct: 90  QLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMG 149

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           +++ A+ +FD M  RNV +W +++    +     EAL +F   N  S   P+++ L SV+
Sbjct: 150 NLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSF-MPDEYSLGSVL 208

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
             CA LG L++G+  H  V++ G E N VV  +L  MY K GS++  ++V N + + S+V
Sbjct: 209 RGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLV 268

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDS 356
            + +++ G A+ G     LD +  M   G +P+ +TFV V+ +CS   ++ +G Q H ++
Sbjct: 269 AWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEA 328

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           +  K G   +    + +V M  R G L ++ K     +   +   +LW ++++A   HG+
Sbjct: 329 V--KAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECK---ERDVVLWSSMIAAYGFHGQ 383

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYA 446
            + A++  N++ + N    N    LS  YA
Sbjct: 384 GEEAIKLFNEMEQENLP-GNEITFLSLLYA 412



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  +  C  L  L     +H+E +K+G  S    ++ L++ Y R    Q + + F 
Sbjct: 302 KITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFL 361

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM--LADL 144
           E  E +VV ++S++A Y   GQ + A+ LF +M    +  NE TF +++ ACS   L D 
Sbjct: 362 ECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDK 421

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
             G      ++ +G +  L   + LVD+ G+   ++ A  +   M  + + + W +++ A
Sbjct: 422 GLG-LFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSA 480


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 326/559 (58%), Gaps = 3/559 (0%)

Query: 47   ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
            + VH   +K G ++++F    LI+ Y +  K   A  L     + ++ S+ ++M GYI  
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS 1077

Query: 107  GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + + AL  F  M    +  +E T AT IKA   L +L  GKQI  +    GF  +L V 
Sbjct: 1078 NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS 1137

Query: 167  SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            S ++DMY KC D+  A  +F  +   + V+WT++I  + +N     AL ++      S  
Sbjct: 1138 SGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV-SGV 1196

Query: 227  RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            +P+++  A++I A + L  L  GK  H  VV+     +  V ++LVDMY KCGSV  + +
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYR 1256

Query: 287  VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            VF ++    VV + +M++G A++G    +L+LF  M S GI+P+ VTF+GVL ACSHSGL
Sbjct: 1257 VFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGL 1316

Query: 347  VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
              E  ++ D+M++ YGI P+ +HY+C+VD LGR GR+ EA  +  S+         ++  
Sbjct: 1317 FSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASAS--MYRA 1374

Query: 407  LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            LL A R  G  + A   +++L+  +   ++AYV LSN YA + +W++V   R+ MK   +
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434

Query: 467  HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
             K+PG SW++++++ + F   +    + S +   + +L ++++E G     T    +DVE
Sbjct: 1435 KKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVE 1494

Query: 527  DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            +E +E  +  HSE+LA+AFGLIS P   TIR++KNLR+C DCH   K IS + +R+ V+R
Sbjct: 1495 EEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLR 1554

Query: 587  DVNRFHHFRNGSCSCGDFW 605
            D NRFHHFRNG+CSCGD+W
Sbjct: 1555 DANRFHHFRNGTCSCGDYW 1573



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 187/379 (49%), Gaps = 14/379 (3%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+ ++KS F       N L+N Y +      A + F    E +++S+ ++++ Y     
Sbjct: 916  IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD---LITGKQIHTHIETFGFQYNLVV 165
               A+  F+ +L + + P++FT A+V++ACS   +      G Q+H +    G   +  V
Sbjct: 976  EMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFV 1035

Query: 166  CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             ++L+D+Y K   +D A  +       ++ SW +I+  + ++ +  +ALE F    ++  
Sbjct: 1036 STALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF-SLMHEMG 1094

Query: 226  DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
               ++  LA+ I A   L  L  GK      ++ G   +  V+S ++DMY KCG +  + 
Sbjct: 1095 IPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNAL 1154

Query: 286  KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            ++F  IS P  V +T+MI G  + G    +L +++ M   G++P++ TF  ++ A S   
Sbjct: 1155 ELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214

Query: 346  LVDEGIQ-HLDSMYRKYGIIPDAKHY--TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             +++G Q H + +   Y +     H+  T +VDM  + G + +AY++ + + V      +
Sbjct: 1215 ALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK---VV 1267

Query: 403  LWGTLLSASRLHGRVDIAV 421
             W  +L     HG VD A+
Sbjct: 1268 FWNAMLLGLAQHGHVDEAL 1286



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 162/335 (48%), Gaps = 12/335 (3%)

Query: 92   NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
            N+ ++   +  +++ GQ   A+  F+ +L + +  +  T   ++ A     DL  G+QIH
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 152  THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
              +    F   + V +SL++MY K   V  A + F      +++SW ++I ++AQN    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 212  EALEMFREFNYQSRD--RPNQHMLASVINACASLGR---LVSGKVAHGVVVRSGCEFNDV 266
            EA+  FR+     RD  +P+Q  LASV+ AC++         G   H   ++ G   +  
Sbjct: 978  EAICTFRDL---LRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSF 1034

Query: 267  VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
            V++AL+D+Y+K G ++ ++ + +   +  + ++ +++ G  K    R +L+ F+ M   G
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG 1094

Query: 327  IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            I  +++T    + A      + +G Q + +   K G   D    + V+DM  + G +  A
Sbjct: 1095 IPIDEITLATAIKASGCLINLKQGKQ-IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 387  YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
             +L   I   PD   + W T++S    +G  D A+
Sbjct: 1154 LELFGEIS-RPD--EVAWTTMISGYIENGDEDHAL 1185



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 156/367 (42%), Gaps = 35/367 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            H+ I+ SG L + +  N+LI  Y +      ARQ+FD+  + ++V++ S++A Y     
Sbjct: 633 AHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFAD 692

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-----KQIHTHIETFGFQYNL 163
                +L    L  L+    F+   +  A  +   L++G     + +H +    GF+ +L
Sbjct: 693 SSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDL 752

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +LV++Y K   V  AR +FD M  R+ V W  ++ A+ +N+   EAL  F  F ++
Sbjct: 753 FVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF-HR 811

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           S   P+   L  VI    S   + + +  H   V++                       Y
Sbjct: 812 SGFXPDFSNLHCVIGGVNS--DVSNNRKRHAEQVKA-----------------------Y 846

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + K+F      ++  +   +      G    ++D F  ++   I  + VT V +L A   
Sbjct: 847 AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +  +D G Q + ++  K    P       +++M  + G +   Y   K+    P+   + 
Sbjct: 907 ADDLDLGEQ-IHALVIKSSFAPVVPVSNSLMNMYSKAGVV---YAAEKTFINSPELDLIS 962

Query: 404 WGTLLSA 410
           W T++S+
Sbjct: 963 WNTMISS 969



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 12/198 (6%)

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           +ADL  GK+ H  I T G   +  + ++L+ MY KC  +  AR+VFD    R++V+W SI
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 201 IVAHAQNA--------QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           + A+AQ A        +G     + REF +       +  LA ++  C   G +   +  
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSI----TRLTLAPLLKLCLLSGFVQVSETV 739

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG  V+ G E +  V+ ALV++Y K G V  +  +F+++     V +  M+    +    
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 313 RFSLDLFNEMISRGIKPN 330
             +L  F+     G  P+
Sbjct: 800 DEALRFFSAFHRSGFXPD 817


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/575 (36%), Positives = 340/575 (59%), Gaps = 6/575 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F+    + + +    S+   IL +G    +     L++ Y +L     A  +F  M   +
Sbjct: 67  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRD 126

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VV++++++A Y   G P+ AL LF++M  + V PN+ T  + + AC+ L DL +G  +H 
Sbjct: 127 VVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQ 186

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            +E  G Q  +VV ++LV++YGKC  ++ A   F  +  +NVV+W++I  A+A+N +  +
Sbjct: 187 RVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRD 246

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH--GVVVRSGCEFNDVVASA 270
           A+ +    + +    PN     SV++ACA++  L  G+  H    V+  G E +  V +A
Sbjct: 247 AIRVLHRMDLEGL-VPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTA 305

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           LV+MY+KCG++  +  +F++I++  +V + S+I   A++G    +L+LF  M   G++P 
Sbjct: 306 LVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPT 365

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            +TF  VL ACSH+G++D+G +H  S    +GI P+A+H+ C+VD+LGR G + ++  L 
Sbjct: 366 IITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLL 425

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
             +  +P   P+ W   L A R +  +D A+ A+  L + + +    YV LSN YA AG 
Sbjct: 426 LHMPFEPH--PVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGR 483

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W +V  +R  M+     KE G SW+E++D+ + F +G+    R  E+ + L+ L + MKE
Sbjct: 484 WSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKE 543

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GYV   T +V  DV+ E +E +VG HSE+LA+AF L++ P+G  IR++KNLR+C DCH 
Sbjct: 544 AGYVP-DTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHT 602

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K IS +V R+ VVRD NRFH F+NG+CSCGD+W
Sbjct: 603 ASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 184/357 (51%), Gaps = 7/357 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +++ Y ++      R+ FDEM   ++VS+ +L+A YI         L F+ ML   + P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E   +  + AC+   ++  G+ I   I   G +   +V ++LV MYGK      A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R+VV+W++++ A+A+N    EAL +FR+ +      PN+  L S ++ACASLG L 
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGV-APNKVTLVSGLDACASLGDLR 179

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           SG + H  V   G +   VV +ALV++Y KCG +  + + F +I   +VV ++++    A
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPD 366
           +    R ++ + + M   G+ PN  TFV VL AC+    + +G + H  +     G+  D
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
               T +V+M  + G L  A  +   I  +D     +LW +L++ +  HG+ + A+E
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLD----LVLWNSLIATNAQHGQTEKALE 352


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 316/528 (59%), Gaps = 7/528 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML---GNLVWPNEFTFATVIKA 137
           AR LFD M   +  S++++++ +   GQP+ AL ++++ML   G+    NEFT ++ + A
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAA 171

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            +       G+++H H+   G   + VV S+L DMY KC  VD AR VFD M  R+VVSW
Sbjct: 172 ATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSW 231

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T+++  +    +  E   +F     +S  +PN+   A V+ ACA       GK  HG + 
Sbjct: 232 TAMVERYFDARRDGEGFRLFVRM-LRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMT 290

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           +S    +    SALV MY+K G +  + +VF  +    +V++T+MI G A+ G    +L 
Sbjct: 291 KSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALR 350

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
            F+ ++  G +P+ VTFVGVL AC+H+GLVD+G+    S+  +YGI   A HY CV+D+L
Sbjct: 351 YFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLL 410

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R+G  + A ++  ++ V P+    LW +LL   R+H  V +A  A+  L E   +    
Sbjct: 411 SRSGLFERAEEMINTMSVKPNK--FLWASLLGGCRIHKNVRLARWAAEALFEIEPENPAT 468

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YVTL+N YA  G ++ V + R  M+  GI K P  SW+E+  + + F  G+ L  +  +V
Sbjct: 469 YVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQV 528

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            +LL++L  KM+E GYV   TG V  DVEDE +++ +G HSERLA+AFG+I+ PKG  I+
Sbjct: 529 YALLKKLYVKMREEGYVA-DTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIK 587

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           + KNLR+C DCH   KLIS IV+R+ +VRD NRFHHF+NGSCSC D+W
Sbjct: 588 VFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 12/307 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +++ G  ++    + L + Y +  +   AR +FD M   +VVS+T+++  Y +  +
Sbjct: 184 LHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARR 243

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
                 LF +ML + + PNEFT+A V++AC+       GKQ+H  +       +    S+
Sbjct: 244 DGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESA 303

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY K  D+  A RVF  M   ++VSWT++I  +AQN Q  EAL  F +   +S  RP
Sbjct: 304 LVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYF-DMLLRSGCRP 362

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           +      V++ACA  G +  G  + H +    G E      + ++D+ ++ G    ++++
Sbjct: 363 DHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEM 422

Query: 288 FNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEMISRGIKP-NDVTFVGVLHACS 342
            N +S  P+   + S++ G   +    L R++ +   E     I+P N  T+V + +  +
Sbjct: 423 INTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFE-----IEPENPATYVTLANIYA 477

Query: 343 HSGLVDE 349
             GL DE
Sbjct: 478 SVGLFDE 484


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 326/559 (58%), Gaps = 3/559 (0%)

Query: 47   ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
            + VH   +K G ++++F    LI+ Y +  K   A  L     + ++ S+ ++M GYI  
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS 1077

Query: 107  GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + + AL  F  M    +  +E T AT IKA   L +L  GKQI  +    GF  +L V 
Sbjct: 1078 NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS 1137

Query: 167  SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            S ++DMY KC D+  A  +F  +   + V+WT++I  + +N     AL ++      S  
Sbjct: 1138 SGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV-SGV 1196

Query: 227  RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            +P+++  A++I A + L  L  GK  H  VV+     +  V ++LVDMY KCGSV  + +
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYR 1256

Query: 287  VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            VF ++    VV + +M++G A++G    +L+LF  M S GI+P+ VTF+GVL ACSHSGL
Sbjct: 1257 VFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGL 1316

Query: 347  VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
              E  ++ D+M++ YGI P+ +HY+C+VD LGR GR+ EA  +  S+         ++  
Sbjct: 1317 FSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASAS--MYRA 1374

Query: 407  LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            LL A R  G  + A   +++L+  +   ++AYV LSN YA + +W++V   R+ MK   +
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434

Query: 467  HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
             K+PG SW++++++ + F   +    + S +   + +L ++++E G     T    +DVE
Sbjct: 1435 KKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVE 1494

Query: 527  DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            +E +E  +  HSE+LA+AFGLIS P   TIR++KNLR+C DCH   K IS + +R+ V+R
Sbjct: 1495 EEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLR 1554

Query: 587  DVNRFHHFRNGSCSCGDFW 605
            D NRFHHFRNG+CSCGD+W
Sbjct: 1555 DANRFHHFRNGTCSCGDYW 1573



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 187/379 (49%), Gaps = 14/379 (3%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+ ++KS F       N L+N Y +      A + F    E +++S+ ++++ Y     
Sbjct: 916  IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD---LITGKQIHTHIETFGFQYNLVV 165
               A+  F+ +L + + P++FT A+V++ACS   +      G Q+H +    G   +  V
Sbjct: 976  EMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFV 1035

Query: 166  CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             ++L+D+Y K   +D A  +       ++ SW +I+  + ++ +  +ALE F    ++  
Sbjct: 1036 STALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF-SLMHEMG 1094

Query: 226  DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
               ++  LA+ I A   L  L  GK      ++ G   +  V+S ++DMY KCG +  + 
Sbjct: 1095 IPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNAL 1154

Query: 286  KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            ++F  IS P  V +T+MI G  + G    +L +++ M   G++P++ TF  ++ A S   
Sbjct: 1155 ELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214

Query: 346  LVDEGIQ-HLDSMYRKYGIIPDAKHY--TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             +++G Q H + +   Y +     H+  T +VDM  + G + +AY++ + + V      +
Sbjct: 1215 ALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK---VV 1267

Query: 403  LWGTLLSASRLHGRVDIAV 421
             W  +L     HG VD A+
Sbjct: 1268 FWNAMLLGLAQHGHVDEAL 1286



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 162/335 (48%), Gaps = 12/335 (3%)

Query: 92   NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
            N+ ++   +  +++ GQ   A+  F+ +L + +  +  T   ++ A     DL  G+QIH
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 152  THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
              +    F   + V +SL++MY K   V  A + F      +++SW ++I ++AQN    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 212  EALEMFREFNYQSRD--RPNQHMLASVINACASLGR---LVSGKVAHGVVVRSGCEFNDV 266
            EA+  FR+     RD  +P+Q  LASV+ AC++         G   H   ++ G   +  
Sbjct: 978  EAICTFRDL---LRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSF 1034

Query: 267  VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
            V++AL+D+Y+K G ++ ++ + +   +  + ++ +++ G  K    R +L+ F+ M   G
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG 1094

Query: 327  IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            I  +++T    + A      + +G Q + +   K G   D    + V+DM  + G +  A
Sbjct: 1095 IPIDEITLATAIKASGCLINLKQGKQ-IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 387  YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
             +L   I   PD   + W T++S    +G  D A+
Sbjct: 1154 LELFGEIS-RPD--EVAWTTMISGYIENGDEDHAL 1185



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 39/369 (10%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            H+ I+ SG L + +  N+LI  Y +      ARQ+FD+  + ++V++ S++A Y     
Sbjct: 633 AHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFAD 692

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-----KQIHTHIETFGFQYNL 163
                +L    L  L+    F+   +  A  +   L++G     + +H +    GF+ +L
Sbjct: 693 SSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDL 752

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +LV++Y K   V  AR +FD M  R+ V W  ++ A+ +N+   EAL  F  F+  
Sbjct: 753 FVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRS 812

Query: 224 S--RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
               D  N H +   +N+  S     + +  H   V++                      
Sbjct: 813 GFFPDFSNLHCVIGGVNSDVS-----NNRKRHAEQVKA---------------------- 845

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            Y+ K+F      ++  +   +      G    ++D F  ++   I  + VT V +L A 
Sbjct: 846 -YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
             +  +D G Q + ++  K    P       +++M  + G +   Y   K+    P+   
Sbjct: 905 VGADDLDLGEQ-IHALVIKSSFAPVVPVSNSLMNMYSKAGVV---YAAEKTFINSPELDL 960

Query: 402 LLWGTLLSA 410
           + W T++S+
Sbjct: 961 ISWNTMISS 969



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 12/198 (6%)

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           +ADL  GK+ H  I T G   +  + ++L+ MY KC  +  AR+VFD    R++V+W SI
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 201 IVAHAQNA--------QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           + A+AQ A        +G     + REF +       +  LA ++  C   G +   +  
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSI----TRLTLAPLLKLCLLSGFVQVSETV 739

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG  V+ G E +  V+ ALV++Y K G V  +  +F+++     V +  M+    +    
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 313 RFSLDLFNEMISRGIKPN 330
             +L  F+     G  P+
Sbjct: 800 DEALRFFSAFHRSGFFPD 817


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/612 (34%), Positives = 330/612 (53%), Gaps = 43/612 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L  C    +L     +HS I + G  ++    N LI  Y +    Q AR++FD M 
Sbjct: 261 FVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS 320

Query: 90  EPNVVSYTSLMAGYINMGQPQIALL-----LFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           + +V+S+++++AGY   G      +     L ++M    V+PN+ TF ++++AC+    L
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGAL 380

Query: 145 ITGKQIHTHIETFGFQY-------------------------------NLVVCSSLVDMY 173
             G+QIH  +   GF+                                N+V  +S + MY
Sbjct: 381 EQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMY 440

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            KC D+  A +VF  M  RNVVSW  +I  +AQN    +  E+      +   +P++  +
Sbjct: 441 IKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF-QPDRVTV 499

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            +++ AC +L  L  GK+ H   V+ G E + VVA++L+ MY+KCG V  +  VF+++SN
Sbjct: 500 ITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN 559

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
              V + +M+ G  ++G G  ++DLF  M+   + PN++T   V+ ACS +GLV EG + 
Sbjct: 560 RDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREI 619

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
              M   + + P  +HY C+VD+LGR GRL EA +  +S+  +PD    +W  LL A + 
Sbjct: 620 FRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDIS--VWHALLGACKS 677

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           H  V +A  A++ ++E     A+ Y+TLSN YA AG W++   +R  M   G+ K+ G S
Sbjct: 678 HNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGES 737

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
            +EI  + + F A +        + + L  L ++MKE GY       V  DV+D  +E+ 
Sbjct: 738 SIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYT-PDMRFVLHDVDDVQKEKA 796

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           +  HSE+LA+A+GL+  P G  IRIMKNLR+C DCH   K IS I +R+ V RD NRFH+
Sbjct: 797 LCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHY 856

Query: 594 FRNGSCSCGDFW 605
           F NG+CSCGDFW
Sbjct: 857 FNNGTCSCGDFW 868



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 222/426 (52%), Gaps = 13/426 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH ++ + G   + +  N LIN Y + +    A Q+F  M   +VV+++S++A Y     
Sbjct: 78  VHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNH 137

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  A   F++M    + PN  TF +++KAC+  + L  G++IHT ++  G + ++ V ++
Sbjct: 138 PAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATA 197

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC ++  A  VF  M  RNVVSWT+II A+AQ+ + +EA E++ +   Q+   P
Sbjct: 198 LITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQM-LQAGISP 256

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S++N+C +   L  G+  H  +   G E + +VA+AL+ MY KC SV  + ++F
Sbjct: 257 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIF 316

Query: 289 NRISNPSVVTYTSMIVGAAKYGL-GRFSLD----LFNEMISRGIKPNDVTFVGVLHACSH 343
           +R+S   V+++++MI G A+ G   + S+D    L   M   G+ PN VTF+ +L AC+ 
Sbjct: 317 DRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTA 376

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G +++G Q + +   K G   D    T + +M  + G + EA ++   +    +   + 
Sbjct: 377 HGALEQGRQ-IHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKM---ANKNVVA 432

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W + LS     G +  A +  +++   N    N  +     YA  G+   V  L S MK 
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIA---GYAQNGDIVKVFELLSSMKA 489

Query: 464 TGIHKE 469
            G   +
Sbjct: 490 EGFQPD 495



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 151/279 (54%), Gaps = 4/279 (1%)

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
           I LL   K  G LV  N  T+  VI+ C+       GK +H  ++  G + ++ + +SL+
Sbjct: 41  IQLLGIIKQRGLLV--NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           + Y K  DV  A +VF  M  R+VV+W+S+I A+A N    +A + F      +   PN+
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT-DANIEPNR 157

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
               S++ AC +   L  G+  H +V   G E +  VA+AL+ MY+KCG ++ + +VF++
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           ++  +VV++T++I   A++     + +L+ +M+  GI PN VTFV +L++C+    ++ G
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            + + S   + G+  D      ++ M  +   + EA ++
Sbjct: 278 -RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREI 315



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N +    VI  CA   R   GK+ H  +   G E +  + ++L++ Y+K   V  +++VF
Sbjct: 55  NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R++   VVT++SMI   A       + D F  M    I+PN +TF+ +L AC++  +++
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILE 174

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G + + ++ +  G+  D    T ++ M  + G +  A ++   +    +   + W  ++
Sbjct: 175 KG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM---TERNVVSWTAII 230

Query: 409 SASRLHGRVDIAVEASNQLIESN-QQVANAYVTLSNT 444
            A+  H +++ A E   Q++++     A  +V+L N+
Sbjct: 231 QANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 329/576 (57%), Gaps = 7/576 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L  C    +LA   +VH++ + +G + +      LI  Y+     + AR++FD+M 
Sbjct: 266 FLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMK 325

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +VVS+T ++ GY      + A  LF  M    + P+  T+  +I AC+  ADL   ++
Sbjct: 326 VRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLARE 385

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH+ +   GF  +L+V ++LV MY KC  +  AR+VFD M  R+VVSW+++I A+ +N  
Sbjct: 386 IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGC 445

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G EA E F      + + P+     +++NAC  LG L  G   +   +++    +  V +
Sbjct: 446 GEEAFETFHLMKRNNVE-PDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGN 504

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL++M  K GS+  +  +F  +    VVT+  MI G + +G  R +LDLF+ M+    +P
Sbjct: 505 ALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRP 564

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VTFVGVL ACS +G V+EG +    +    GI+P  + Y C+VD+LGR G LDEA  L
Sbjct: 565 NSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELL 624

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
              + + P+    +W TLL+A R++G +D+A  A+ + + S       YV LS+ YA AG
Sbjct: 625 INRMPLKPNSS--IWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAG 682

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            WENV  +R  M+  G+ KE GC+W+E+  + + F   +    +  E+ + L  L   +K
Sbjct: 683 MWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIK 742

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GY+   T  V  +V ++ +EE +  HSE+LA+A+G++S+P G  IRI KNLR+C DCH
Sbjct: 743 REGYI-PVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCH 801

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS +  R+ + RD +RFHHF+NG CSCGD+W
Sbjct: 802 SASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 204/381 (53%), Gaps = 7/381 (1%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H++++K GF+S+      L++ YV+      ARQ+FD + + +V ++  ++ GY   G  
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           + A  LF +M      PN  +F +++  CS    L  GK +H      G   ++ V ++L
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATAL 304

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           + MY  C  ++GARRVFD M  R+VVSWT +I  +A+N+   +A  +F     +   +P+
Sbjct: 305 IRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG-IQPD 363

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +     +INACAS   L   +  H  VVR+G   + +V +ALV MYAKCG++  + +VF+
Sbjct: 364 RITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFD 423

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +S   VV++++MI    + G G  + + F+ M    ++P+ VT++ +L+AC H G +D 
Sbjct: 424 AMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDL 483

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA-YKLAKSIQVDPDGGPLLWGTLL 408
           G++ + +   K  ++        +++M  + G ++ A Y     +Q D     + W  ++
Sbjct: 484 GME-IYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRD----VVTWNVMI 538

Query: 409 SASRLHGRVDIAVEASNQLIE 429
               LHG    A++  +++++
Sbjct: 539 GGYSLHGNAREALDLFDRMLK 559



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 221/453 (48%), Gaps = 49/453 (10%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +++  Q C  L        V   I++SG   N + LN LI  +        ARQ FD + 
Sbjct: 64  YVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVE 123

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              VV++ +++AGY  +G  + A  LF++M+   + P+  TF  V+ ACS  A L  GK+
Sbjct: 124 NKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKE 183

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
            H  +   GF  +  + ++LV MY K   +DGAR+VFD +  R+V ++  +I  +A++  
Sbjct: 184 FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGD 243

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G +A ++F     Q   +PN+    S+++ C++   L  GK  H   + +G   +  VA+
Sbjct: 244 GEKAFQLFYRMQ-QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVAT 302

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+ MY  CGS+  + +VF+++    VV++T MI G A+      +  LF  M   GI+P
Sbjct: 303 ALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQP 362

Query: 330 NDVTFVGVLHACSHSG---------------------LVDEGIQHLDSMYRKYGIIPDAK 368
           + +T++ +++AC+ S                      LVD  + H   MY K G I DA+
Sbjct: 363 DRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVH---MYAKCGAIKDAR 419

Query: 369 H------------YTCVVDMLGRTGRLDEAYK---LAKSIQVDPDGGPLLWGTLLSASRL 413
                        ++ ++      G  +EA++   L K   V+PD   + +  LL+A   
Sbjct: 420 QVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPD--VVTYINLLNACGH 477

Query: 414 HGRVDIAVEASNQLIE----SNQQVANAYVTLS 442
            G +D+ +E   Q I+    S+  V NA + ++
Sbjct: 478 LGALDLGMEIYTQAIKADLVSHIPVGNALINMN 510



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 2/266 (0%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  + + C ML D   GKQ+  HI   G Q N+   ++L+ ++  C ++  AR+ FD +
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             + VV+W +II  +AQ     EA  +FR+   ++ + P+      V++AC+S   L  G
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME-PSIITFLIVLDACSSPAGLKLG 181

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  V++ G   +  + +ALV MY K GS++ + +VF+ +    V T+  MI G AK 
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G G  +  LF  M   G KPN ++F+ +L  CS    +  G + + +     G++ D + 
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWG-KAVHAQCMNTGLVDDVRV 300

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQV 395
            T ++ M    G ++ A ++   ++V
Sbjct: 301 ATALIRMYMGCGSIEGARRVFDKMKV 326



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 156/323 (48%), Gaps = 10/323 (3%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T  H I        L     +HS+++++GF ++      L++ Y +    + ARQ+FD M
Sbjct: 366 TYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM 425

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              +VVS+++++  Y+  G  + A   F  M  N V P+  T+  ++ AC  L  L  G 
Sbjct: 426 SRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGM 485

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           +I+T         ++ V ++L++M  K   ++ AR +F+ M  R+VV+W  +I  ++ + 
Sbjct: 486 EIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHG 545

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVV 267
              EAL++F     + R RPN      V++AC+  G +  G+     ++   G      +
Sbjct: 546 NAREALDLFDRM-LKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMEL 604

Query: 268 ASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
              +VD+  + G ++ ++ + NR+   P+   +++++     YG    +LD+      R 
Sbjct: 605 YGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYG----NLDVAERAAERC 660

Query: 327 I--KPND-VTFVGVLHACSHSGL 346
           +  +P D   +V + H  + +G+
Sbjct: 661 LMSEPYDGAVYVQLSHMYAAAGM 683


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/612 (35%), Positives = 330/612 (53%), Gaps = 43/612 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L  C    +L     +HS I + G  ++    N LI  Y +    Q AR+ FD M 
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 90  EPNVVSYTSLMAGYINMGQPQIALL-----LFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           + +V+S+++++AGY   G      L     L ++M    V+PN+ TF +++KACS+   L
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGAL 402

Query: 145 ITGKQIHTHIETFGFQ-------------------------------YNLVVCSSLVDMY 173
             G+QIH  I   GF+                                N+V  +SL+ MY
Sbjct: 403 EQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMY 462

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            KC D+  A +VF  M  RNVVSW  +I  +AQ+    +  E+      +   +P++  +
Sbjct: 463 IKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF-QPDRVTI 521

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            S++ AC +L  L  GK+ H   V+ G E + VVA++L+ MY+KCG V  +  VF++ISN
Sbjct: 522 ISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISN 581

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
              V + +M+ G  ++G+G  ++DLF  M+   + PN++TF  V+ AC  +GLV EG + 
Sbjct: 582 RDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREI 641

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
              M   + + P  +HY C+VD+LGR GRL EA +  + +  +PD    +W  LL A + 
Sbjct: 642 FRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDIS--VWHALLGACKS 699

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           H  V +A  A++ ++      A+ YVTLSN YA AG W++   +R  M   G+ K+ G S
Sbjct: 700 HDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGES 759

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
            +EI  + + F A +        + + L  L ++MKE GY       V  DV++  +E  
Sbjct: 760 SIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYT-PDMRFVLHDVDEVQKERA 818

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           +  HSE+LA+A+GL+  P G  IRIMKNLR+C DCH   K IS I +R+ V RD NRFH+
Sbjct: 819 LCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHY 878

Query: 594 FRNGSCSCGDFW 605
           F+NG+CSCGDFW
Sbjct: 879 FKNGTCSCGDFW 890



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 220/426 (51%), Gaps = 13/426 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH ++ + G   + +  N LIN Y +        Q+F  M   +VV+++S++A Y     
Sbjct: 100 VHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNH 159

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  A   F++M    + PN  TF +++KAC+  + L   ++IHT ++  G + ++ V ++
Sbjct: 160 PAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATA 219

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC ++  A  +F  M  RNVVSWT+II A+AQ+ + +EA E++ +   Q+   P
Sbjct: 220 LITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKM-LQAGISP 278

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S++N+C +   L  G+  H  +   G E + VVA+AL+ MY KC  +  + + F
Sbjct: 279 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETF 338

Query: 289 NRISNPSVVTYTSMIVGAAKYGL-GRFSLD----LFNEMISRGIKPNDVTFVGVLHACSH 343
           +R+S   V+++++MI G A+ G   + SLD    L   M   G+ PN VTF+ +L ACS 
Sbjct: 339 DRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSV 398

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G +++G Q + +   K G   D    T + +M  + G + EA ++   ++   +   + 
Sbjct: 399 HGALEQGRQ-IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME---NKNVVA 454

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W +LL+     G +  A +  +++   N    N  +     YA +G+   V  L S MK 
Sbjct: 455 WASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIA---GYAQSGDIAKVFELLSSMKV 511

Query: 464 TGIHKE 469
            G   +
Sbjct: 512 EGFQPD 517



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 194/398 (48%), Gaps = 50/398 (12%)

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
           I LL   K  G LV  N  T+  +I+ C+ L     GK +H  ++  G   ++ + +SL+
Sbjct: 63  IQLLGIIKQRGLLV--NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           + Y K  DV    +VF  M  R+VV+W+S+I A+A N    +A + F      +   PN+
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK-DANIEPNR 179

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
               S++ AC +   L   +  H VV  SG E +  VA+AL+ MY+KCG ++ + ++F +
Sbjct: 180 ITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQK 239

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-------- 342
           +   +VV++T++I   A++     + +L+ +M+  GI PN VTFV +L++C+        
Sbjct: 240 MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG 299

Query: 343 ---HSGLVDEGIQ-------HLDSMYRKYGIIPDAKH------------YTCVVDMLGRT 380
              HS + + G++        L +MY K   I DA+             ++ ++    ++
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359

Query: 381 G-----RLDEAYKLAKSIQ---VDPDGGPLLWGTLLSASRLHGRVD----IAVEASNQLI 428
           G      LDE ++L + ++   V P+    +  ++L A  +HG ++    I  E S    
Sbjct: 360 GYQDKESLDEVFQLLERMRREGVFPNKVTFM--SILKACSVHGALEQGRQIHAEISKVGF 417

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           ES++ +  A   + N YA  G       + S+M+   +
Sbjct: 418 ESDRSLQTA---IFNMYAKCGSIYEAEQVFSKMENKNV 452


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 331/543 (60%), Gaps = 9/543 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F +N LIN YV+      A QLFD+M + NV+S+T++++ Y      Q AL L   ML +
Sbjct: 97  FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V PN +T+++V+++C+ ++D+   + +H  I   G + ++ V S+L+D++ K  + + A
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDA 213

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
             VFD M   + + W SII   AQN++   ALE+F+    ++     Q  L SV+ AC  
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK-RAGFIAEQATLTSVLRACTG 272

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  G  AH  +V+   +   ++ +ALVDMY KCGS+  + +VFN++    V+T+++M
Sbjct: 273 LALLELGMQAHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTM 330

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G A+ G  + +L LF  M S G KPN +T VGVL ACSH+GL+++G  +  SM + YG
Sbjct: 331 ISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG 390

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           I P  +HY C++D+LG+ G+LD+A KL   ++ +PD   + W TLL A R+   + +A  
Sbjct: 391 IDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA--VTWRTLLGACRVQRNMVLAEY 448

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           A+ ++I  + + A  Y  LSN YA + +W++V  +R+ M+  GI KEPGCSW+E+  Q +
Sbjct: 449 AAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
           AF  G+    +  EV   L +L  ++   GYV  +T  V  D+E E  E+ +  HSE+LA
Sbjct: 509 AFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYV-PETNFVLQDLEGEQMEDSLRHHSEKLA 567

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           LAFGL+++P    IRI KNLR+C DCH   KL S +  R  V+RD  R+HHF++G CSCG
Sbjct: 568 LAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCG 627

Query: 603 DFW 605
           D+W
Sbjct: 628 DYW 630



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 157/302 (51%), Gaps = 27/302 (8%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R N R + +T   +   L+ C  +  +  +H  I+K G  S+ F  + LI+ + +L +
Sbjct: 153 MLRDNVRPNVYT---YSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + A  +FDEM+  + + + S++ G+    +  +AL LF++M        + T  +V++A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ LA L  G Q H HI    +  +L++ ++LVDMY KC  ++ A RVF+ M  R+V++W
Sbjct: 270 CTGLALLELGMQAHVHI--VKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------K 250
           +++I   AQN    EAL++F      S  +PN   +  V+ AC+  G L  G       K
Sbjct: 328 STMISGLAQNGYSQEALKLFERMK-SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386

Query: 251 VAHGV-VVRS--GCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGA 306
             +G+  VR   GC         ++D+  K G ++ + K+ N +   P  VT+ +++ GA
Sbjct: 387 KLYGIDPVREHYGC---------MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL-GA 436

Query: 307 AK 308
            +
Sbjct: 437 CR 438



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 148/293 (50%), Gaps = 12/293 (4%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +W +  T++ +IK C     +  G  I  H+   G +  + + + L++MY K N ++ A 
Sbjct: 57  LWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAH 116

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           ++FD M  RNV+SWT++I A+++     +ALE+      +   RPN +  +SV+ +C  +
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELL-VLMLRDNVRPNVYTYSSVLRSCNGM 175

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             +   ++ H  +++ G E +  V SAL+D++AK G    +  VF+ +     + + S+I
Sbjct: 176 SDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG 362
            G A+      +L+LF  M   G      T   VL AC+   L++ G+Q H+  +     
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQD 292

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +I +      +VDM  + G L++A ++   ++   +   + W T++S    +G
Sbjct: 293 LILN----NALVDMYCKCGSLEDALRVFNQMK---ERDVITWSTMISGLAQNG 338


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 331/577 (57%), Gaps = 39/577 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GN 122
           + N +++    L +  +A  LF+ M + ++VS+ +++AGY   G    AL LF +ML  +
Sbjct: 126 SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 185

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + P+EFT  +V+ AC+ L ++  GKQ+H +I      YN  V ++L+  Y K   V+ A
Sbjct: 186 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENA 245

Query: 183 RRVFD---------------------------------LMGCRNVVSWTSIIVAHAQNAQ 209
           RR+ D                                 +M  R+VV+WT++IV + QN +
Sbjct: 246 RRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGR 305

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+++FR         PN + LA+V++ CASL  L  GK  H   +RS  E +  V++
Sbjct: 306 NDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN 364

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           A++ MYA+ GS  ++ ++F+++      +T+TSMIV  A++G G  ++ LF EM+  G++
Sbjct: 365 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 424

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ +T+VGVL ACSH+G V+EG ++ D +  ++ I P+  HY C+VD+L R G   EA +
Sbjct: 425 PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 484

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + V+PD   + WG+LLSA R+H   ++A  A+ +L+  +   + AY  ++N Y+  
Sbjct: 485 FIRRMPVEPDA--IAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSAC 542

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W +   +    K   + KE G SW  IR + + F A + +  +   V ++   +  ++
Sbjct: 543 GRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEI 602

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  G+V      V  DV+DE +EE++  HSE+LA+AFGLIS P+  T+R+MKNLR+C DC
Sbjct: 603 KGAGFVPDLQS-VLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDC 661

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS + +R+ +VRD  RFHHFR+G CSC D+W
Sbjct: 662 HAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 19/293 (6%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           M+ K   +  AR VF  M  R+ VSWT ++V   +  +  EA++   +        P Q 
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQF 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L +V+++CA       G+  H  VV+ G      VA+++++MY KCG    +  VF R+
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSL--DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
              SV ++ +M+  +    LGR  L   LF  M  R I    V++  ++   + +GL  +
Sbjct: 120 PVRSVSSWNAMV--SLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYNQNGLDAK 173

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDM---LG--RTGRLDEAYKLAKSIQVDPDGGPLLW 404
            ++    M  +  + PD    T V+     LG  R G+   AY L   +  +      + 
Sbjct: 174 ALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ----VT 229

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
             L+S     G V+ A    +Q +E++  V  ++  L   Y   G+ E+   +
Sbjct: 230 NALISTYAKSGSVENARRIMDQSMETDLNVI-SFTALLEGYVKIGDMESAREM 281



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 9/202 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           +H   ++S    ++   N +I  Y R      AR++FD++      +++TS++      G
Sbjct: 347 IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 406

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET---FGFQYNLV 164
           Q + A+ LF++ML   V P+  T+  V+ ACS    +  GK+ +  I+       + +  
Sbjct: 407 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 466

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            C  +VD+  +      A+     M    + ++W S++ A  +  +  E  E+  E    
Sbjct: 467 AC--MVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSA-CRVHKNAELAELAAE-KLL 522

Query: 224 SRDRPNQHMLASVINACASLGR 245
           S D  N    +++ N  ++ GR
Sbjct: 523 SIDPNNSGAYSAIANVYSACGR 544


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/593 (34%), Positives = 337/593 (56%), Gaps = 39/593 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+EI+ +GF S+      LIN Y +   +  AR++FD+M + ++VS+  ++  Y+  G 
Sbjct: 229 IHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD 288

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L+QK+        + TF +++ ACS +  L  G+ +H+HI   G    + V ++
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA--------------- 213
           LV+MY KC  ++ AR+VF+ M  R+ V+W+++I A+A N  G +A               
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 214 -------------------LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
                              +++FRE    +  +P+     +V+ ACASLGRL   K  H 
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            +  S  E N VV + L++MYA+CGS+  ++++F      +VV++T+M+   ++YG    
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +LDLF EM   G+KP+DVT+  +L  C+H G +++G ++   M   +G+ P A H+  +V
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMV 588

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+LGR+GRL +A +L +S+  +PD  P+ W T L+A R+HG++++   A+ ++ E +   
Sbjct: 589 DLLGRSGRLFDAKELLESMPFEPD--PVAWMTFLTACRIHGKLELGEAAAERVYELDPSS 646

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
              Y+ +SN YA  G WE V S+R +M+  G+ K PG S++E+  + + F +G     R 
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISI-PKG 553
            E+   L  L   M+  GYV   T  V  DV +  +E ++  HSE++A+AFGL+S    G
Sbjct: 707 DEICEELTRLHGLMRAAGYV-PDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSG 765

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF-RNGSCSCGDFW 605
             IR++KNLR+C DCH   K I+ I  RD ++RD NRFH F  +G CSCGD+W
Sbjct: 766 EPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 207/425 (48%), Gaps = 41/425 (9%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F+  L  C  L     +H+ +  SG  S     N L+  Y R      A+++F  +   +
Sbjct: 113 FVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
             S+ +++  +   G    AL +F++M  ++  PN  T+  VI   S    L  G++IH 
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMKCDMK-PNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF  +LVV ++L++MYGKC     AR VFD M  R++VSW  +I  + QN   HE
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE 291

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           ALE++++ + +   R  +    S++ AC+S+  L  G++ H  ++  G +    VA+ALV
Sbjct: 292 ALELYQKLDMEGFKR-TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALV 350

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR------------------- 313
           +MYAKCGS+  + KVFN + N   V ++++I   A  G G+                   
Sbjct: 351 NMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTIC 410

Query: 314 ---------------FSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
                           ++ +F EM  + G+KP+ VTF+ VL AC+  G + E ++ L + 
Sbjct: 411 WNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQ 469

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             +  +  +      +++M  R G L+EA +L  + +   +   + W  +++A   +GR 
Sbjct: 470 ISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK---EKTVVSWTAMVAAFSQYGRY 526

Query: 418 DIAVE 422
             A++
Sbjct: 527 AEALD 531



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 195/378 (51%), Gaps = 11/378 (2%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYT 97
           C  +    ++H  I  S F  +T   N LI+ Y +      AR +F+ M   + NVVS+ 
Sbjct: 20  CGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           +++A Y   G    AL+L+ +M    +  +  TF +V+ ACS LA    G++IH  +   
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYS 136

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G      + ++LV MY +   V  A+R+F  +  R+  SW ++I+AH+Q+     AL +F
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +E       +PN     +VI+  ++   L  G+  H  +V +G + + VVA+AL++MY K
Sbjct: 197 KEMKCDM--KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGK 254

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CGS + + +VF+++    +V++  MI    + G    +L+L+ ++   G K    TFV +
Sbjct: 255 CGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSI 314

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L ACS    + +G + + S   + G+  +    T +V+M  + G L+EA K+  +++   
Sbjct: 315 LGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK--- 370

Query: 398 DGGPLLWGTLLSASRLHG 415
           +   + W TL+ A   +G
Sbjct: 371 NRDAVAWSTLIGAYASNG 388



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 141/266 (53%), Gaps = 8/266 (3%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+  TF TV+ +CS   D+  G+ +H  I    F+ + +V ++L+ MYGKC+ +  AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 186 FDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           F+ M    RNVVSW ++I A+AQN    EAL ++   N Q     +     SV+ AC+SL
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLG-TDHVTFVSVLGACSSL 123

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
            +   G+  H  V  SG +    +A+ALV MYA+ GSV  + ++F  +      ++ ++I
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
           +  ++ G    +L +F EM    +KPN  T++ V+   S   ++ EG + + +     G 
Sbjct: 181 LAHSQSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEG-RKIHAEIVANGF 238

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKL 389
             D    T +++M G+ G   EA ++
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREV 264



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 8/200 (4%)

Query: 33  FIQQLQECKHLISLASV---HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L+ C  L  L+ V   H++I +S   SN    N LIN Y R    + A +LF    
Sbjct: 447 FIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E  VVS+T+++A +   G+   AL LFQ+M    V P++ T+ +++  C+    L  G +
Sbjct: 507 EKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWR 566

Query: 150 IHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---H 204
             T + E  G        +++VD+ G+   +  A+ + + M    + V+W + + A   H
Sbjct: 567 YFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIH 626

Query: 205 AQNAQGHEALEMFREFNYQS 224
            +   G  A E   E +  S
Sbjct: 627 GKLELGEAAAERVYELDPSS 646



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 17/159 (10%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+     +V+ +C+S G +  G+  H  +  S  E + +V +AL+ MY KC S+  +  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 287 VFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-- 342
           VF  +     +VV++ +MI   A+ G    +L L+  M  +G+  + VTFV VL ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 343 ------HSGLVDEGIQHLDS-------MYRKYGIIPDAK 368
                 H+ +   G+    S       MY ++G + DAK
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAK 162


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 331/577 (57%), Gaps = 39/577 (6%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GN 122
           + N +++    L +  +A  LF+ M + ++VS+ +++AGY   G    AL LF +ML  +
Sbjct: 232 SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 291

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            + P+EFT  +V+ AC+ L ++  GKQ+H +I      YN  V ++L+  Y K   V+ A
Sbjct: 292 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENA 351

Query: 183 RRVFD---------------------------------LMGCRNVVSWTSIIVAHAQNAQ 209
           RR+ D                                 +M  R+VV+WT++IV + QN +
Sbjct: 352 RRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGR 411

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+++FR         PN + LA+V++ CASL  L  GK  H   +RS  E +  V++
Sbjct: 412 NDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN 470

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           A++ MYA+ GS  ++ ++F+++      +T+TSMIV  A++G G  ++ LF EM+  G++
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ +T+VGVL ACSH+G V+EG ++ D +  ++ I P+  HY C+VD+L R G   EA +
Sbjct: 531 PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 590

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + V+PD   + WG+LLSA R+H   ++A  A+ +L+  +   + AY  ++N Y+  
Sbjct: 591 FIRRMPVEPDA--IAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSAC 648

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W +   +    K   + KE G SW  IR + + F A + +  +   V ++   +  ++
Sbjct: 649 GRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEI 708

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  G+V      V  DV+DE +EE++  HSE+LA+AFGLIS P+  T+R+MKNLR+C DC
Sbjct: 709 KGAGFVPDLQS-VLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDC 767

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS + +R+ +VRD  RFHHFR+G CSC D+W
Sbjct: 768 HAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 193/429 (44%), Gaps = 75/429 (17%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N FT N L++ + +  +   AR +F EM E + VS+T ++ G    G+   A+     M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            +   P +FT   V+ +C++      G+++H+ +   G    + V +S+++MYGKC D +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 181 GARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNAQ 209
            A  VF+ M  R+V                               VSW ++I  + QN  
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +AL++F    ++S   P++  + SV++ACA+LG +  GK  H  ++R+   +N  V +
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 270 ALVDMYAKCGSVNYSDKV---------------------------------FNRISNPSV 296
           AL+  YAK GSV  + ++                                 F  ++N  V
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ---- 352
           V +T+MIVG  + G    ++DLF  MI+ G +PN  T   VL  C+    +D G Q    
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR 456

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
            + S+  +   + +A     ++ M  R+G    A ++    QV      + W +++ A  
Sbjct: 457 AIRSLLEQSSSVSNA-----IITMYARSGSFPWARRMFD--QVCWRKETITWTSMIVALA 509

Query: 413 LHGRVDIAV 421
            HG+ + AV
Sbjct: 510 QHGQGEEAV 518



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 58/372 (15%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG----ARRVF 186
           +A +++ C   A+   G+ IH      G   +  +C++L+  YG+     G    ARR+F
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 187 D--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD------------------ 226
           D   +  RNV +W S++   A++ +  +A  +F E     RD                  
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM--PERDAVSWTVMVVGLNRAGRFG 146

Query: 227 --------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
                          P Q  L +V+++CA       G+  H  VV+ G      VA++++
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVL 206

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL--DLFNEMISRGIKPN 330
           +MY KCG    +  VF R+   SV ++ +M+  +    LGR  L   LF  M  R I   
Sbjct: 207 NMYGKCGDSETATTVFERMPVRSVSSWNAMV--SLNTHLGRMDLAESLFESMPDRSI--- 261

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM---LG--RTGRLDE 385
            V++  ++   + +GL  + ++    M  +  + PD    T V+     LG  R G+   
Sbjct: 262 -VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           AY L   +  +      +   L+S     G V+ A    +Q +E++  V  ++  L   Y
Sbjct: 321 AYILRTEMAYNSQ----VTNALISTYAKSGSVENARRIMDQSMETDLNVI-SFTALLEGY 375

Query: 446 ALAGEWENVHSL 457
              G+ E+   +
Sbjct: 376 VKIGDMESAREM 387



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 9/202 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           +H   ++S    ++   N +I  Y R      AR++FD++      +++TS++      G
Sbjct: 453 IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET---FGFQYNLV 164
           Q + A+ LF++ML   V P+  T+  V+ ACS    +  GK+ +  I+       + +  
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 572

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            C  +VD+  +      A+     M    + ++W S++ A  +  +  E  E+  E    
Sbjct: 573 AC--MVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSA-CRVHKNAELAELAAE-KLL 628

Query: 224 SRDRPNQHMLASVINACASLGR 245
           S D  N    +++ N  ++ GR
Sbjct: 629 SIDPNNSGAYSAIANVYSACGR 650


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 333/558 (59%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH +ILK+ ++ +      L+  Y +L     A ++F+EM + +VV ++ ++A +   G 
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF +M    V PNEFT ++++  C++      G+Q+H  +   GF  ++ V ++
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNA 388

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC  +D A ++F  +  +N VSW ++IV +    +G +A  MFRE   +++   
Sbjct: 389 LIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFRE-ALRNQVSV 447

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +   +S + ACASL  +  G   HG+ +++       V+++L+DMYAKCG + ++  VF
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVF 507

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N +    V ++ ++I G + +GLGR +L + + M  R  KPN +TF+GVL  CS++GL+D
Sbjct: 508 NEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLID 567

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G +  +SM R +GI P  +HYTC+V +LGR+G+LD+A KL + I  +P    ++W  +L
Sbjct: 568 QGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEP--SVMIWRAML 625

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SAS      + A  ++ ++++ N +    YV +SN YA A +W NV S+R  MK  G+ K
Sbjct: 626 SASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKK 685

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E +   + F  G +       +  +L  L  K    GYV  +   V +D++DE
Sbjct: 686 EPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNA-VLLDMDDE 744

Query: 529 AREEIVGLHSERLALAFGLISIPKGIT-IRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
            +++ + +HSERLALA+GL+ +P     I IMKNLR+C DCH   K+IS IV+RD V+RD
Sbjct: 745 EKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRD 804

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFHHF  G CSCGD W
Sbjct: 805 MNRFHHFHAGVCSCGDHW 822



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 190/401 (47%), Gaps = 7/401 (1%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           S L R+    + H    F++             +HS I+K G+ SN F    LIN Y   
Sbjct: 135 SRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVC 194

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
                AR +F+ +L  ++V +  +++ Y+  G  + +L L   M      PN +TF T +
Sbjct: 195 GSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTAL 254

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           KA   L      K +H  I    +  +  V   L+ +Y +  D+  A +VF+ M   +VV
Sbjct: 255 KASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVV 314

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHG 254
            W+ +I    QN   +EA+++F     ++   PN+  L+S++N CA +G+    G+  HG
Sbjct: 315 PWSFMIARFCQNGFCNEAVDLFIRMR-EAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHG 372

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
           +VV+ G + +  V++AL+D+YAKC  ++ + K+F  +S+ + V++ ++IVG    G G  
Sbjct: 373 LVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGK 432

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +  +F E +   +   +VTF   L AC+    +D G+Q +  +  K            ++
Sbjct: 433 AFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQ-VHGLAIKTNNAKKVAVSNSLI 491

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           DM  + G +  A  +   ++         W  L+S    HG
Sbjct: 492 DMYAKCGDIKFAQSVFNEMETIDVAS---WNALISGYSTHG 529



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 6/346 (1%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           IS  ++H +ILK G   + F  N L+N YV+    + A  LFDEM E N VS+ +L  GY
Sbjct: 66  ISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGY 125

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
               Q  I L       G+ + P+ FT  + +K    L        +H+ I   G+  N 
Sbjct: 126 --ACQDPIGLYSRLHREGHELNPHVFT--SFLKLFVSLDKAEICPWLHSPIVKLGYDSNA 181

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V ++L++ Y  C  VD AR VF+ + C+++V W  I+  + +N    ++L++       
Sbjct: 182 FVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMA 241

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               PN +   + + A   LG     K  HG ++++    +  V   L+ +Y + G ++ 
Sbjct: 242 GF-MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSD 300

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + KVFN +    VV ++ MI    + G    ++DLF  M    + PN+ T   +L+ C+ 
Sbjct: 301 AFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAI 360

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
                 G + L  +  K G   D      ++D+  +  ++D A KL
Sbjct: 361 GKCSGLG-EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKL 405



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 142/336 (42%), Gaps = 21/336 (6%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
            +  +++ C    D I+ K IH  I   G   +L   + L++ Y K      A  +FD M
Sbjct: 51  AYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEM 110

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             RN VS+ ++    AQ     + + ++   + +  +  N H+  S +    SL +    
Sbjct: 111 PERNNVSFVTL----AQGYACQDPIGLYSRLHREGHEL-NPHVFTSFLKLFVSLDKAEIC 165

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
              H  +V+ G + N  V +AL++ Y+ CGSV+ +  VF  I    +V +  ++    + 
Sbjct: 166 PWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVEN 225

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD--EGI--QHLDSMYRKYGIIP 365
           G    SL L + M   G  PN+ TF   L A    G  D  +G+  Q L + Y     + 
Sbjct: 226 GYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCY-----VL 280

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG----RVDIAV 421
           D +    ++ +  + G + +A+K+   +   P    + W  +++    +G     VD+ +
Sbjct: 281 DPRVGVGLLQLYTQLGDMSDAFKVFNEM---PKNDVVPWSFMIARFCQNGFCNEAVDLFI 337

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
                 +  N+   ++ +        +G  E +H L
Sbjct: 338 RMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGL 373


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 338/572 (59%), Gaps = 7/572 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C H   +     +HS  +K+GF S+ +    LI+ Y +      A+++ D + E +V
Sbjct: 352 LRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDV 411

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+TS++AGY+     + AL  F++M    +WP+    A+ I AC+ +  +  G QIH  
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHAR 471

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +   G+  ++ + + LV +Y +C     A   F+ +  +  ++W  +I   AQ+    EA
Sbjct: 472 VYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEA 531

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++F + + Q+  + N     S I+A A+L  +  GK  H  V+++G      +++AL+ 
Sbjct: 532 LKVFMKMD-QAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALIS 590

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y KCGS+  +   F  ++  + V++ ++I   +++G G  +LDLF++M  +G+KP+DVT
Sbjct: 591 LYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVT 650

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FVGVL ACSH GLV+EG+ +  SM  ++GI P   HY CVVD+LGR G+LD A +  + +
Sbjct: 651 FVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEM 710

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            +  D   ++W TLLSA ++H  ++I   A+  L+E     + +YV LSN YA+ G+W +
Sbjct: 711 PIPADS--MVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWAS 768

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  MK  G+ KEPG SW+E+++  +AF+ G+ L     ++ + L  L  ++ + GY
Sbjct: 769 RDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGY 828

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
                 L F + E E ++    +HSE+LA+AFGL+S+P  + +R++KNLR+C DCH   K
Sbjct: 829 KQENYHL-FHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMK 887

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             S ++ R+ V+RDV RFHHF NGSCSCGD+W
Sbjct: 888 FTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 212/400 (53%), Gaps = 6/400 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H ++ K GF S TF  N LI+ Y+R +  ++A ++F +ML  + V++ +L++G+   G 
Sbjct: 165 IHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGH 224

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL +F +M  + + P+  T A+++ ACS + DL  GKQ+H+++   G   + ++  S
Sbjct: 225 GDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGS 284

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y K  D++ A ++FD     NVV W  ++VA+ Q     ++ ++F      +  RP
Sbjct: 285 LLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRM-LAAGVRP 343

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+     ++  C   G +  G+  H + +++G + +  V+  L+DMY+K G ++ + ++ 
Sbjct: 344 NKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL 403

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + I    VV++TSMI G  ++   + +L+ F EM + GI P+++     + AC+    V 
Sbjct: 404 DMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVH 463

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q    +Y   G   D   +  +V +  R G   EA+   ++I+   +G  + W  L+
Sbjct: 464 QGSQIHARVYVS-GYSADVSIWNGLVYLYARCGISKEAFSSFEAIE-HKEG--ITWNGLI 519

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           S     G  + A++   ++ ++  +  N +  +S+  A A
Sbjct: 520 SGFAQSGLYEEALKVFMKMDQAGAKY-NVFTFVSSISASA 558



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 184/350 (52%), Gaps = 4/350 (1%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +  +H++ +  G        N LI+ Y +    + AR++F+E+   + VS+ ++++GY  
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G  + A+ L+++M  + V P  +  ++++ AC+       G+ IH  +   GF     V
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFV 180

Query: 166 CSSLVDMYGKCNDVDGARRVF-DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
            ++L+ +Y +C     A RVF D++ C + V++ ++I  HAQ   G  AL +F E    S
Sbjct: 181 GNALISLYLRCRSFRLADRVFCDMLYC-DSVTFNTLISGHAQCGHGDRALGIFDEMQL-S 238

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              P+   +AS++ AC+++G L  GK  H  ++++G   + ++  +L+D+Y K G +  +
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEA 298

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            ++F+     +VV +  M+V   +      S D+F  M++ G++PN  T+  +L  C+H+
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           G +  G Q + S+  K G   D      ++DM  + G LD+A ++   I+
Sbjct: 359 GEIGLGEQ-IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIE 407



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 165/334 (49%), Gaps = 13/334 (3%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA---DL 144
           M      S+   +AG++    P+  L LF       +      FA  ++AC        L
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           +   +IH      G     ++ + L+D+Y K   V  ARRVF+ +  R+ VSW +++  +
Sbjct: 61  VP--EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           AQN  G EA+ ++RE  ++S   P  ++L+S+++AC        G++ H  V + G    
Sbjct: 119 AQNGLGEEAVRLYREM-HRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSE 177

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
             V +AL+ +Y +C S   +D+VF  +     VT+ ++I G A+ G G  +L +F+EM  
Sbjct: 178 TFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G+ P+ VT   +L ACS  G + +G Q L S   K G+  D      ++D+  ++G ++
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQ-LHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           EA ++  S         +LW  +L A   +G++D
Sbjct: 297 EALQIFDS---GDRTNVVLWNLMLVA---YGQID 324


>gi|147804919|emb|CAN78051.1| hypothetical protein VITISV_015864 [Vitis vinifera]
          Length = 231

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/231 (81%), Positives = 209/231 (90%), Gaps = 1/231 (0%)

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           MLGRTGRLDEA++LAKSIQV+PD G LLWGTLLSASRL+GRVDIAVEAS  LIESNQQVA
Sbjct: 1   MLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVA 60

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN-ALFERG 494
            AYVT+SNTYA+AG+WENVHS+R EMK  G++KEPGCSWVEIRD  Y FYAG+ +L  RG
Sbjct: 61  AAYVTMSNTYAMAGKWENVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARG 120

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
           SEV SLL ELER+MKERGYVGG  GLV +DVE+EA+EEIVGLHSERLALAFGLISIPKG+
Sbjct: 121 SEVASLLXELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGV 180

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           TIR+MKNLRMCRDCH+ FKLIS+IVERDFVVRDVNRFHHF NGSC+C DFW
Sbjct: 181 TIRVMKNLRMCRDCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW 231


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 349/611 (57%), Gaps = 15/611 (2%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLA--------SVHSEILKSG 57
           +  L F    S     N  S      H    L++C  L+ L          +H+  ++ G
Sbjct: 3   STQLSFLCFTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHG 62

Query: 58  FLSNTFTLN-HLINCYVRLK-KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL 115
                   N HLI   V L      A Q+F+++  PN+ ++ +++ G+     P  A+ L
Sbjct: 63  VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122

Query: 116 FQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           F +M   + + P+  TF  + KA + L D+  G+ IH+ +   GF     V +SLV MY 
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS 182

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
               +  A +VF++M  R+ V+W S+I   A N   +EAL ++RE   +  + P+   + 
Sbjct: 183 VLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVE-PDGFTMV 241

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           S+++AC  LG L  G+  H  +V+ G   N   ++AL+D+Y+KCG+   + KVF+ +   
Sbjct: 242 SLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEER 301

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           SVV++TS+IVG A  GLG  +L LF E+  +G+KP+++TFVGVL+ACSH G++DEG  + 
Sbjct: 302 SVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYF 361

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
             M  +YGI+P  +H+ C+VD+L R G++ +AY   +++ V P+   ++W TLL A  +H
Sbjct: 362 RRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNA--VIWRTLLGACTIH 419

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G +++   A  ++    Q+ +  +V LSN YA    W +V ++R  M   G+ K PG S 
Sbjct: 420 GHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSL 479

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           VE++++ Y F  G+    +  E  ++L ++ + +K  GYV  +T  V  D+E+E +E  +
Sbjct: 480 VELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYV-PRTVNVLADIEEEEKETAL 538

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             H+E++A+AF L++ P G  IRIMKNLR+C DCH   KLIS + ER+ +VRD +RFHHF
Sbjct: 539 SHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHF 598

Query: 595 RNGSCSCGDFW 605
           ++GSCSC D+W
Sbjct: 599 KDGSCSCKDYW 609


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 344/588 (58%), Gaps = 21/588 (3%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +Q+LQ+C +L +L  VH+++L +G    T+ L+HL+N   +   T  A  +F+ +  P +
Sbjct: 9   LQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST-YAFTIFNHIPNPTL 67

Query: 94  VSYTSLMAGYINMG-QPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIH 151
             Y +L++   +   Q  +A  L+  +L +  + PN FTF ++ KAC+    L  G  +H
Sbjct: 68  FLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLH 127

Query: 152 THIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ- 209
            H+  F    Y+  V +SL++ Y K   +  +R +FD +   ++ +W +++ A+AQ+A  
Sbjct: 128 AHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASH 187

Query: 210 ------------GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                         EAL +F +    S+ +PN+  L ++I+AC++LG L  G  AHG V+
Sbjct: 188 VSYSTSFEDADMSLEALHLFCDMQL-SQIKPNEVTLVALISACSNLGALSQGAWAHGYVL 246

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           R+  + N  V +ALVDMY+KCG +N + ++F+ +S+     Y +MI G A +G G  +L+
Sbjct: 247 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALE 306

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           L+  M    + P+  T V  + ACSH GLV+EG++  +SM   +G+ P  +HY C++D+L
Sbjct: 307 LYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLL 366

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR GRL EA +  + + + P+   +LW +LL A++LHG +++   A   LIE   + +  
Sbjct: 367 GRAGRLKEAEERLQDMPMKPNA--ILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGN 424

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN YA  G W +V  +R  MK  G+ K PG S VEI    + F  G+       E+
Sbjct: 425 YVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEI 484

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            S + E+ R++ E G+   +T  V  DVE+E +E+ +  HSERLA+AF LI+    + IR
Sbjct: 485 YSKIGEINRRLLEYGH-KPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIR 543

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLR+C DCH + KLIS   +RD +VRD NRFHHF++GSCSC D+W
Sbjct: 544 IIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 339/564 (60%), Gaps = 12/564 (2%)

Query: 49  VHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H   L+SG F S+ ++ + L++ Y    +   AR+ FDE+ +PN V  T++ +GY+   
Sbjct: 115 LHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNN 174

Query: 108 QPQIALLLFQKMLGN--LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
               +L LF+ M+ +      +E        A + + D      +H  I   GF+ N  V
Sbjct: 175 LVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGV 234

Query: 166 CSSLVDMYGK--CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF-REFNY 222
            ++++D Y K    D++ AR+VFD M  R+VVSW S+I  +AQN    EA+ ++ +  N 
Sbjct: 235 VNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNV 293

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
               + N   L++V+ ACA  G + +GK  H  VVR G E N  V +++VDMY+KCG V 
Sbjct: 294 GGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVE 353

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + + F +I   +++++++MI G   +G G+ +L++F EM   G++PN +TF+ VL ACS
Sbjct: 354 MASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACS 413

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GL+DEG    ++M +++GI    +HY C+VD+LGR G LDEAY L K ++V PD    
Sbjct: 414 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAA-- 471

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LLSA R+H  V++A  +  +L E +   +  YV LSN YA A  W++V  +R  +K
Sbjct: 472 IWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVK 531

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
              I K PG S  E++ + Y FY G+    +  E+ S L +L  +M+E GYV   TG V 
Sbjct: 532 TRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYV-PNTGSVL 590

Query: 523 VDVEDEAREEIVGLHSERLALAFGLI-SIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            D+++E +E  + +HSE+LA+AF L+ S+P+ + I I+KNLR+C DCH   K I+ I ER
Sbjct: 591 HDLDEEEKESALRIHSEKLAVAFALMNSVPRSV-IHIIKNLRVCSDCHTAMKFITKITER 649

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + ++RD+ RFHHF++G CSC D+W
Sbjct: 650 EIIIRDLQRFHHFKDGLCSCRDYW 673


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 325/546 (59%), Gaps = 13/546 (2%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L+  Y R      AR  FD +  P+VVS+ ++ A Y+   + + AL+LF++ML   V P+
Sbjct: 395 LLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPS 454

Query: 128 EFTFATVIKACSMLADLIT---GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
             TF T + AC+          GK+I + +E  G + +  V ++ ++MY KC  +  AR 
Sbjct: 455 VATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARA 514

Query: 185 VFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           VF+ +    R+ ++W S++ A+  +  G EA E+F+    +   +PN+    +V++A  S
Sbjct: 515 VFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 574

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVTYT 300
              +  G+  H  VV +G E + V+ +AL++MYAKCGS++ +  +F++ S+    V+ +T
Sbjct: 575 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 634

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           S+I G A+YG    +L LF  M  +G++PN VTF+  L AC+H G +++G + L  M   
Sbjct: 635 SLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPD 694

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           +GI+P +KH++C+VD+LGR GRLDEA KL  ++ Q D     + W  LL A +    ++ 
Sbjct: 695 HGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADV----ITWMALLDACKNSKELER 750

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
               + ++++ + +VA++Y+ L++ YA AG W    ++R  M   GI  +PGCS VE+  
Sbjct: 751 GERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQ 810

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + ++F AG+    +  E+   L  L   +K  GYV   TGLV  DV  E +E ++  HSE
Sbjct: 811 ELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVA-DTGLVLHDVSQEHKERLLMRHSE 869

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL+S P G  +R++KNLR+C DCH   KLIS +  RD ++RD +R+HHF +G+C
Sbjct: 870 KLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTC 929

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 930 SCGDYW 935



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 166/320 (51%), Gaps = 19/320 (5%)

Query: 37  LQECKHLISLAS---VHSEIL--KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           LQ C  L +L     +H+ IL  +    +++F  + LI  + +      A  L D     
Sbjct: 50  LQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRF--A 107

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +V S T+++  ++  G+P  A+ LF +M    V PN      ++ ACS L +L  G++IH
Sbjct: 108 SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAAGRRIH 164

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQNA 208
           + I    F+ N V+ ++L+ MY KC  +  A++ FD +     R+VV+W ++I A  +N 
Sbjct: 165 SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNG 224

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLG--RLVSGKVAHGVVVRSGCEFNDV 266
              EAL++FR+ +      PN     SV+++C   G   L   +  HG +V +G E    
Sbjct: 225 SAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAF 284

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISN----PSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
           V +ALVD Y K GS++ + +VF R  +     S+VT ++MI    + G  + SL LF  M
Sbjct: 285 VRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAM 344

Query: 323 ISRGIKPNDVTFVGVLHACS 342
              G KP+ VT V VL+ACS
Sbjct: 345 NLEGTKPSGVTLVSVLNACS 364



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 143/267 (53%), Gaps = 13/267 (4%)

Query: 130 TFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           T+  +++AC  L  L  G+++H HI         +  + S L+ M+ KC ++  A  + D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
                +V S T++I A  ++ +  +A+E+F         RPN H L +++NAC+ LG L 
Sbjct: 105 RFA--SVYSCTAMIRAWMEHGRPDKAMELFDRMEV----RPNCHALIALVNACSCLGNLA 158

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS---VVTYTSMIV 304
           +G+  H  +     E N V+ +AL+ MY+KCGS+  + + F+R+   S   VVT+ +MI 
Sbjct: 159 AGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMIS 218

Query: 305 GAAKYGLGRFSLDLFNEMISRGI-KPNDVTFVGVLHACSHSGLVD-EGIQHLDSMYRKYG 362
              + G  R +L LF +M   G   PN VTFV VL +C  +GL+  E ++ +       G
Sbjct: 219 AFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAG 278

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           I  +A   T +VD  G+ G LD+A+++
Sbjct: 279 IEREAFVRTALVDSYGKLGSLDDAWEV 305



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 211/459 (45%), Gaps = 28/459 (6%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLK 76
           R   R +CH     I  +  C  L +LA+   +HS+I    F  N+   N LI+ Y +  
Sbjct: 134 RMEVRPNCHA---LIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCG 190

Query: 77  KTQVARQLFDEMLEP---NVVSYTSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFA 132
               A+Q FD +      +VV++ ++++ ++  G  + AL LF+ M       PN  TF 
Sbjct: 191 SLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFV 250

Query: 133 TVIKAC--SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF---- 186
           +V+ +C  + L  L   + IH  I   G +    V ++LVD YGK   +D A  VF    
Sbjct: 251 SVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKG 310

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL--G 244
           D     ++V+ +++I A  QN    E+L +F   N +   +P+   L SV+NAC+ L  G
Sbjct: 311 DEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEG-TKPSGVTLVSVLNACSMLQVG 369

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
              +  +   + V S    N V+ + L+  YA+   +  +   F+ I +P VV++ +M  
Sbjct: 370 SATAFVLEQAMEVVSATRDN-VLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAA 428

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-SHSGLVDEGI-QHLDSMYRKYG 362
              ++   R +L LF  M+  G++P+  TF+  L AC ++       I + + S+  + G
Sbjct: 429 AYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG 488

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           +  D       ++M  + G L +A  + + I        + W ++L+A   HG    A E
Sbjct: 489 LEGDTAVANATLNMYAKCGSLADARAVFERIS-PARRDCITWNSMLAAYGHHGLGKEAFE 547

Query: 423 -----ASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
                 + +L++ N+    A +  S +     +   +H+
Sbjct: 548 LFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHA 586



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 30  KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  L       S+A    +H+ ++ +GF S+T   N L+N Y +      A+ +FD
Sbjct: 562 KVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFD 621

Query: 87  EML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           +    + +V+++TSL+AGY   GQ + AL LF  M    V PN  TF + + AC+    L
Sbjct: 622 KSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKL 681

Query: 145 ITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
             G ++ + +    G        S +VD+ G+C  +D A ++ +     +V++W +++ A
Sbjct: 682 EQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDA 741


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/575 (36%), Positives = 339/575 (58%), Gaps = 6/575 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F+    + + +    S+   IL +G    +     L++ Y +L     A  +F  M   +
Sbjct: 82  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRD 141

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VV++++++A Y   G P+ AL LF++M  + V PN+ T  + + AC+ L DL +G  +H 
Sbjct: 142 VVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQ 201

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            +E  G Q  +VV ++LV++YGKC  ++ A   F  +  +NVV+W++I  A+A+N +  +
Sbjct: 202 RVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRD 261

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV--VVRSGCEFNDVVASA 270
           A+ +    + +    PN     SV++ACA++  L  G+  H    V+  G E +  V +A
Sbjct: 262 AIRVLHRMDLEGL-APNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTA 320

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           LV+MY+KCG++  +  +F++I++  +V + S+I   A++G    +L+LF  M   G++P 
Sbjct: 321 LVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPT 380

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            +TF  VL ACSH+G++D+G +H  S    +GI P+A+H+ C+VD+LGR G + ++  L 
Sbjct: 381 IITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLL 440

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
             +  +P   P+ W   L A R +  +D A+ A+  L + + +    YV LSN YA AG 
Sbjct: 441 LHMPFEPH--PVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGR 498

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W +V  +R  M+     KE G SW+E++D+ + F +G+    R  E+ + L+ L + MK 
Sbjct: 499 WSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKA 558

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GYV   T +V  DV+ E +E +VG HSE+LA+AF L++ P+G  IR++KNLR+C DCH 
Sbjct: 559 AGYVP-DTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHT 617

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K IS +V R+ VVRD NRFH F+NG+CSCGD+W
Sbjct: 618 ASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 185/368 (50%), Gaps = 7/368 (1%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           G++ N F  N LI+ Y +  +   A  +F  +   NV S+T ++A +          L F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           + ML   + P E   +  + AC+   ++  G+ I   I   G +   +V ++LV +YGK 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                A  VF  M  R+VV+W++++ A+A+N    EAL +FR+ +      PN+  L S 
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGV-APNKVTLVSG 183

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           ++ACASLG L SG + H  V   G +   VV +ALV++Y KCG +  + + F +I   +V
Sbjct: 184 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNV 243

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLD 355
           V ++++    A+    R ++ + + M   G+ PN  TFV VL AC+    + +G + H  
Sbjct: 244 VAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHER 303

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLH 414
                 G+  D    T +V+M  + G L  A  +   I  +D     +LW +L++ +  H
Sbjct: 304 IHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLD----LVLWNSLIATNAQH 359

Query: 415 GRVDIAVE 422
           G+ + A+E
Sbjct: 360 GQTEKALE 367



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 8/236 (3%)

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +E  G+  N  +C+ L+D+Y KC+  D A  VF  +  +NV SWT ++ A A+N      
Sbjct: 1   MEELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRC 60

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
              FR    Q  + P +  ++  ++AC     +  G+     ++ +G E   +V +ALV 
Sbjct: 61  WLFFRGMLLQGIN-PGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVS 119

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y K G    +  VF R+S+  VV +++M+   A+ G  R +L LF +M   G+ PN VT
Sbjct: 120 LYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT 179

Query: 334 FVGVLHACSHSGLVDEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            V  L AC+  G +  G    Q +++   + G++      T +V++ G+ GR++ A
Sbjct: 180 LVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVG----TALVNLYGKCGRIEAA 231


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 327/568 (57%), Gaps = 14/568 (2%)

Query: 47  ASVHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           A+VH  +     F S+ F    LI  Y  L     ARQ+FDE    N+  + +++     
Sbjct: 268 AAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALAL 327

Query: 106 MGQPQIALLLFQKMLGNLVWP-NEFTFATVIKAC-----SMLADLITGKQIHTHIETFGF 159
               + AL     M G L  P + +++A  +KAC     S L      +++H H    G+
Sbjct: 328 ADHGEEALTCLADM-GRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGY 386

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
             +  V ++L+D Y K   V  A RVF  M  RN+VSW+++I  +A+N +  +A+++F+E
Sbjct: 387 GLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQE 446

Query: 220 FNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
                 D  PN   + SV++ACA +  L  GKV H  ++R G +    V +AL+ MY KC
Sbjct: 447 MMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKC 506

Query: 279 GSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           G +     +FN I    +VV++ S+I G   +G GR SL +F EMI  GI PN +TFV V
Sbjct: 507 GCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSV 566

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L ACSH GLV++G +  +SM  +Y + P A+HY C+VD+LGR GRLDEA +L +S+++ P
Sbjct: 567 LGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQP 625

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
              P +WG+LL A R+HG V+ A  A + L +   + A  YV L++ YA A     V  L
Sbjct: 626 S--PQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVL 683

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           +  ++   + K PGCSW+E++ + Y+F + +    +  E+ +L+ E   +MK  GYV   
Sbjct: 684 KELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVP-D 742

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           T  V  D+E+E +E I+  HSE+LA+AFGLI    G  IRI KNLR+C DCH V K IS 
Sbjct: 743 TRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISK 802

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             +R+ VVRDVNRFHHFRNG CSC D+W
Sbjct: 803 FTDREIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 355/604 (58%), Gaps = 17/604 (2%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLI 69
           LA SS+    K S   T++ F   ++ C  L  + S    H +    G+ S+ F  + LI
Sbjct: 62  LAFSSM---RKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALI 118

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML------GNL 123
             Y    K + AR++FDE+ + N+VS+TS++ GY   G    A+ LF+ +L       + 
Sbjct: 119 VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND--VDG 181
           ++ +     +VI ACS +      + IH+ +   GF   + V ++L+D Y K  +  V  
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR++FD +  ++ VS+ SI+  +AQ+   +EA E+FR          N   L++V+ A +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
             G L  GK  H  V+R G E + +V ++++DMY KCG V  + K F+R+ N +V ++T+
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G   +G    +L+LF  MI  G++PN +TFV VL ACSH+GL  EG +  ++M  ++
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+ P  +HY C+VD+LGR G L +AY L + +++ PD   ++W +LL+A R+H  V++A 
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD--SIIWSSLLAACRIHKNVELAE 476

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            +  +L E +      Y+ LS+ YA AG W++V  +R  MK  G+ K PG S +E+  + 
Sbjct: 477 ISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEV 536

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F  G+    +  ++   L EL RK+ E GYV   T  V  DV++E +E  + +HSE+L
Sbjct: 537 HVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV-SNTSSVCHDVDEEEKEMTLRVHSEKL 595

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFG+++   G T+ ++KNLR+C DCH+V KLIS IV+R+FVVRD  RFHHF++G CSC
Sbjct: 596 AIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSC 655

Query: 602 GDFW 605
           GD+W
Sbjct: 656 GDYW 659



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 190/382 (49%), Gaps = 15/382 (3%)

Query: 74  RLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
           R  + Q    LF+  ++  +V S+ S++A     G    ALL F  M    ++P   +F 
Sbjct: 21  RHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFP 80

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
             IKACS L D+ +GKQ H     FG+Q ++ V S+L+ MY  C  ++ AR+VFD +  R
Sbjct: 81  CAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKR 140

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-----LASVINACASLGRLV 247
           N+VSWTS+I  +  N    +A+ +F++      D  +        L SVI+AC+ +    
Sbjct: 141 NIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKG 200

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS--VNYSDKVFNRISNPSVVTYTSMIVG 305
             +  H  V++ G +    V + L+D YAK G   V  + K+F++I +   V+Y S++  
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 306 AAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
            A+ G+   + ++F  ++ ++ +  N +T   VL A SHSG +  G    D + R  G+ 
Sbjct: 261 YAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLE 319

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            D    T ++DM  + GR++ A K    ++   +     W  +++   +HG    A+E  
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMK---NKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 425 NQLIESNQQVANAYVTLSNTYA 446
             +I+S   V   Y+T  +  A
Sbjct: 377 PAMIDSG--VRPNYITFVSVLA 396


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 349/611 (57%), Gaps = 15/611 (2%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLA--------SVHSEILKSG 57
           +  L F    S     N  S      H    L++C  L+ L          +H+  ++ G
Sbjct: 3   STQLSFLCFTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHG 62

Query: 58  FLSNTFTLN-HLINCYVRLK-KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL 115
                   N HLI   V L      A Q+F+++  PN+ ++ +++ G+     P  A+ L
Sbjct: 63  VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122

Query: 116 FQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           F +M   + + P+  TF  + KA + L D+  G+ IH+ +   GF     V +SLV MY 
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS 182

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
                + A +VF++M  R+ V+W S+I   A N   +EAL ++RE   +  + P+   + 
Sbjct: 183 VFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVE-PDGFTMV 241

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           S+++AC  LG L  G+  H  +V+ G   N   ++AL+D+Y+KCG+   + KVF+ +   
Sbjct: 242 SLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEER 301

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           SVV++TS+IVG A  GLG  +L LF E+  +G+KP+++TFVGVL+ACSH G++DEG  + 
Sbjct: 302 SVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYF 361

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
             M  +YGI+P  +H+ C+VD+L R G++ +AY   +++ V P+   ++W TLL A  +H
Sbjct: 362 RRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNA--VIWRTLLGACTIH 419

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G +++   A  ++    Q+ +  +V LSN YA    W +V ++R  M   G+ K PG S 
Sbjct: 420 GHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSL 479

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           VE++++ Y F  G+    +  E  ++L ++ + +K  GYV  +T  V  D+E+E +E  +
Sbjct: 480 VELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYV-PRTVNVLADIEEEEKETAL 538

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             H+E++A+AF L++ P G  IRIMKNLR+C DCH   KLIS + ER+ +VRD +RFHHF
Sbjct: 539 SHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHF 598

Query: 595 RNGSCSCGDFW 605
           ++GSCSC D+W
Sbjct: 599 KDGSCSCKDYW 609


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 327/587 (55%), Gaps = 13/587 (2%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R    T A  ++   E  H+     VH   +K G   +   +  L++ Y +      A+ 
Sbjct: 209 RPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQF 268

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           LFD M  P++V+Y +L++GY   G  + ++ LF+++  +   PN  T   VI   S    
Sbjct: 269 LFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGH 328

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
            +  + +H  +       + +V ++L  +Y + ND++ AR +FD M  + + SW ++I  
Sbjct: 329 ELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISG 388

Query: 204 HAQNAQGHEALEMFR---EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +AQN     A+ +F+   E N Q    PN   ++S ++ACA LG L  GK  H ++ +  
Sbjct: 389 YAQNGLTEMAVALFQLMQELNVQ----PNPITISSTLSACAHLGALSLGKWVHRIISKEK 444

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E N  V +AL+DMYAKCGS+  +  +F+R+ N +VV++ +MI G   +G G  +L L+ 
Sbjct: 445 LELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYK 504

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           +M+   I P   TF+ V++ACSH GLVDEG +    M  +Y I P  +H TC+VD+LGR 
Sbjct: 505 DMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRA 564

Query: 381 GRLDEAYKLAKSIQVDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           G+L+EA +L   I   P    GP +WG LL A  +H   D+A  AS +L E + + A  Y
Sbjct: 565 GKLNEALEL---ISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYY 621

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LSN Y     +     +R E K   + K PGC+ +EI D+ + F AG+ L  +   + 
Sbjct: 622 VLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIY 681

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           S L  L  KM E GY    T     DVE+E +E +V +HSE+LA+AFGL+S   G  IRI
Sbjct: 682 SYLERLTAKMIEAGY-QPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRI 740

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +KNLR+C DCH+  K IS + +R  VVRD +RFHHFR+G CSCGD+W
Sbjct: 741 IKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 193/384 (50%), Gaps = 10/384 (2%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   + +G+ ++TF  + L   Y +L +   AR++FD +  P+ + + +L+AG     
Sbjct: 135 TLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG-- 192

Query: 108 QPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
               AL  F +M+    V P+  T A+ ++A +  + +  G+ +H +    G   +  V 
Sbjct: 193 --SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVV 250

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+ +Y KC D+D A+ +FD M   ++V++ ++I  ++ N     ++E+F+E    S  
Sbjct: 251 TGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELT-ASGW 309

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RPN   L +VI   +  G  +  +  H  VV++  + + +V++AL  +Y +   +  +  
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ +   ++ ++ +MI G A+ GL   ++ LF  M    ++PN +T    L AC+H G 
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA 429

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G + +  +  K  +  +    T ++DM  + G + EA  +   +    +   + W  
Sbjct: 430 LSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMD---NKNVVSWNA 485

Query: 407 LLSASRLHGRVDIAVEASNQLIES 430
           ++S   LHG+   A++    ++++
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDA 509



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 10/284 (3%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           LT    R +  T    I       H +    +H+ ++K+   ++      L   Y RL  
Sbjct: 304 LTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + AR +FD MLE  + S+ ++++GY   G  ++A+ LFQ M    V PN  T ++ + A
Sbjct: 364 MESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSA 423

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ L  L  GK +H  I     + N+ V ++L+DMY KC  +  AR +FD M  +NVVSW
Sbjct: 424 CAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSW 483

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV- 256
            ++I  +  + QG EAL+++++    +R  P      SVI AC+  G +  G+    V+ 
Sbjct: 484 NAMISGYGLHGQGAEALKLYKDM-LDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMT 542

Query: 257 ----VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
               +  G E      + +VD+  + G +N + ++ +     ++
Sbjct: 543 NEYRITPGIEH----CTCMVDLLGRAGKLNEALELISEFPQSAI 582



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 126 PNEFTFATVIKACSMLA-----DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
           P+ F+FA    + S        D    + +H      G+  +  V S+L  +Y K +  D
Sbjct: 107 PDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGD 166

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR+VFD +   + + W +++        G EALE F       R RP+   LAS + A 
Sbjct: 167 DARKVFDTVPSPDTILWNTLLA----GLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAA 222

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A    +  G+  HG  V+ G   ++ V + L+ +Y+KCG ++ +  +F+R+ NP +V Y 
Sbjct: 223 AEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYN 282

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           ++I G +  G+   S++LF E+ + G +PN  T V V+   S  G
Sbjct: 283 ALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFG 327


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 336/607 (55%), Gaps = 41/607 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV-------------RLKKTQ 79
           F    + C+ L  L  +H+    SG  ++ FT NHL+  Y              R+ +  
Sbjct: 109 FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 168

Query: 80  V------------------ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           V                  AR+LFDEM E NV ++ +++AG  N+G  + +L  F  M  
Sbjct: 169 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 228

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
             + P+EF   +V + C+ L D++TG+Q+H ++   G   ++ V SSL  MY +C  +  
Sbjct: 229 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 288

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE---MFREFNYQSRDRPNQHMLASVIN 238
              V  ++   ++VS  +II    QN     ALE   M R     +    +     S I+
Sbjct: 289 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAA----DVVTFVSAIS 344

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           +C+ L  L  G+  HG V+++G +    V + LV MY++CG +  S++VF          
Sbjct: 345 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 404

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
            ++MI     +G G+ +++LF +M++ G +P+DVTF+ +L+ACSHSGL +EG+   + M 
Sbjct: 405 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 464

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG+ P  KHYTCVVD+LGR+G LDEA  L  S+ + PDG  ++W TLLSA +     D
Sbjct: 465 KTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG--VIWKTLLSACKTQKNFD 522

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A   + ++IE +   + +YV LSN  A +  W +V  +R  M+   + KEPG SWVE++
Sbjct: 523 MAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELK 582

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
              + F  G+    R  E+   L E+  K+++ GY      +V  D+EDE +E  +  HS
Sbjct: 583 GHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGY-SPDMSMVLHDMEDEEKEVSLSHHS 641

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AF  +S+P+G+ IR+MKNLR+C DCH   KL+S +  R+ VVRDV+RFHHF++G 
Sbjct: 642 EKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGR 701

Query: 599 CSCGDFW 605
           CSC D+W
Sbjct: 702 CSCRDYW 708


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/502 (40%), Positives = 302/502 (60%), Gaps = 6/502 (1%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G     + +F +M  + V P+  TF  ++++ +  + L  G+ +H  I  FG   +  V 
Sbjct: 43  GPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQ 102

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+ MY     VD AR +F +M  RNV+SW+ +I  + +  Q  EAL +FRE      +
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162

Query: 227 --RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             RPN+  ++ V+ AC  LG L  GK AH  + + G   + V+ +AL+DMYAKCGSV  +
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKA 222

Query: 285 DKVFNRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
             VF+ +  N  V+ +++MI G A +GL    + LF++MI++G++PN VTF+ V  AC H
Sbjct: 223 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            GLV EG  +L  M   Y IIP  +HY C+VD+ GR GR+ EA+ + KS+ ++PD   L+
Sbjct: 283 GGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD--VLV 340

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG LLS SR+HG ++    A  +LIE     + AYV LSN YA  G WE+V  +R  M+ 
Sbjct: 341 WGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMET 400

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            GI K PGCS +E+    + F+ G+       ++  +L E+  ++K  GYVG  T  V +
Sbjct: 401 MGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVG-NTKEVLL 459

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+++E +E  + LHSE+LALA+G +    G  IRI+KNLR+CRDCH   K+IS + +R+ 
Sbjct: 460 DLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREI 519

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           +VRD NRFHHF  G CSC D+W
Sbjct: 520 IVRDCNRFHHFTQGLCSCRDYW 541



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 148/293 (50%), Gaps = 15/293 (5%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT    +Q       L    SVH++IL+ G   + F    LI+ Y       +AR LF  
Sbjct: 65  HTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAV 124

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQ--KMLG-NLVWPNEFTFATVIKACSMLADL 144
           M E NV+S++ ++ GY+  GQ + AL LF+  +MLG N V PNEFT + V+ AC  L  L
Sbjct: 125 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 184

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVA 203
             GK  H +I+  G   ++V+ ++L+DMY KC  V+ A  VF  +G  ++V++W+++I  
Sbjct: 185 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 244

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            A +    E + +F +   Q   RPN     +V  AC   G +  GK      +R   E 
Sbjct: 245 LAMHGLAEECVGLFSKMINQGV-RPNAVTFLAVFCACVHGGLVSEGK----DYLRRMTED 299

Query: 264 NDVVAS-----ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG 310
             ++ +      +VD+Y + G +  +  V   +   P V+ + +++ G+  +G
Sbjct: 300 YSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 327/559 (58%), Gaps = 26/559 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VHS  +KS F       N L++ Y +      A ++F++M E NVVS+TS++AGY   G
Sbjct: 272 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +   A+ L Q+M    V  +     +++ AC+    L  GK +H +I+    + NL VC+
Sbjct: 332 RSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++ A  VF  M  ++++SW ++I                         +
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------------GELK 429

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +A V+ ACASL  L  GK  HG ++R+G   +  VA+ALVD+Y KCG +  +  +
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I +  +V++T MI G   +G G  ++  FNEM   GI+P++V+F+ +L+ACSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +    M   + I P  +HY C+VD+L RTG L +AY+  +++ + PD    +WG L
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDA--TIWGAL 607

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   R +  +++A + + ++ E   + +  YV L+N YA A +WE V  LR ++ + G+ 
Sbjct: 608 LCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLR 667

Query: 468 KEPGCSWVEIRDQTYAFYAG-NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
           K PGCSW+EI+ +   F +G N+       + SLL+++ RKMKE G+   KT    ++ +
Sbjct: 668 KNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHF-PKTKYALINAD 726

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  +E  +  HSE+LA+AFGL+++P   TIR+ KNLR+C DCH++ K +S    R+ V+R
Sbjct: 727 EMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLR 786

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G CSC  FW
Sbjct: 787 DPNRFHHFKDGYCSCRGFW 805



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 181/352 (51%), Gaps = 26/352 (7%)

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
           K+ + A +LFD++ + +V+S+ S+++GY++ G  +  L ++++M+   +  +  T  +V+
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
             C+    L  GK +H+      F+  +   ++L+DMY KC D+DGA RVF+ MG RNVV
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWTS+I  + ++ +   A+++ ++   +   + +   + S+++ACA  G L +GK  H  
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGV-KLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +  +  E N  V +AL+DMYAKCGS+  ++ VF+ +    ++++ +MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI------------ 425

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
                      +KP+  T   VL AC+    ++ G + +     + G   D      +VD
Sbjct: 426 ---------GELKPDSRTMACVLPACASLSALERG-KEIHGYILRNGYSSDRHVANALVD 475

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +  + G L  A  L   I   P    + W  +++   +HG  + A+   N++
Sbjct: 476 LYVKCGVLGLARLLFDMI---PSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 524



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 149/341 (43%), Gaps = 60/341 (17%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF--- 186
           T+++V++ C+ L     GK++H+ I++     +  +   LV  Y  C D+   RRVF   
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 187 ------------------------------------------------DLMGCRNVVSWT 198
                                                           D +  R+V+SW 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I  +  N      L ++++  Y   D  +   + SV+  CA+ G L  GK  H + ++
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGID-VDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           S  E     ++ L+DMY+KCG ++ + +VF ++   +VV++TSMI G  + G    ++ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--VVDM 376
             +M   G+K + V    +LHAC+ SG +D G    D  Y K   + ++  + C  ++DM
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD--YIKANNM-ESNLFVCNALMDM 396

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             + G ++ A  +  ++ V      + W T++   +   R 
Sbjct: 397 YAKCGSMEAANSVFSTMVVK---DIISWNTMIGELKPDSRT 434


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 336/594 (56%), Gaps = 39/594 (6%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           A   S + +   + +  + N +++    L +  +A  LF+ M   ++VS+ +++AGY   
Sbjct: 215 AETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQN 274

Query: 107 GQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           G    AL LF +ML  + + P+EFT  +V+ AC+ L ++  GKQ+H +I      YN  V
Sbjct: 275 GLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV 334

Query: 166 CSSLVDMYGKCNDVDGARRVFD---------------------------------LMGCR 192
            ++L+  Y K   V+ ARR+ D                                 +M  R
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           +VV+WT++IV + QN +  EA+++FR         PN + LA+V++ CASL  L  GK  
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGL 311
           H   +RS  E +  V++A++ MYA+ GS  ++ ++F+++      +T+TSMIV  A++G 
Sbjct: 454 HCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ 513

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
           G  ++ LF EM+  G++P+ +T+VGVL ACSH+G V+EG ++ D +  ++ I P+  HY 
Sbjct: 514 GEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYA 573

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           C+VD+L R G   EA +  + + V+PD   + WG+LLSA R+H   ++A  A+ +L+  +
Sbjct: 574 CMVDLLARAGLFSEAQEFIRRMPVEPDA--IAWGSLLSACRVHKNAELAELAAEKLLSID 631

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
              + AY  ++N Y+  G W +   +    K   + KE G SW  IR + + F A + + 
Sbjct: 632 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 691

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
            +   V ++   +  ++K  G+V      V  DV+DE +EE++  HSE+LA+AFGLIS P
Sbjct: 692 PQRDAVYAMAARMWEEIKGAGFVPDLQS-VLHDVDDELKEELLSRHSEKLAIAFGLISTP 750

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  T+R+MKNLR+C DCH   K IS + +R+ +VRD  RFHHFR+G CSC D+W
Sbjct: 751 EKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 193/429 (44%), Gaps = 75/429 (17%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N FT N L++ + +  +   AR +F EM E + VS+T ++ G    G+   A+     M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            +   P +FT   V+ +C++      G+++H+ +   G    + V +S+++MYGKC D +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 181 GARRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNAQ 209
            A  VF+ M  R+V                               VSW ++I  + QN  
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +AL++F    ++S   P++  + SV++ACA+LG +  GK  H  ++R+   +N  V +
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 270 ALVDMYAKCGSVNYSDKV---------------------------------FNRISNPSV 296
           AL+  YAK GSV  + ++                                 F  ++N  V
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ---- 352
           V +T+MIVG  + G    ++DLF  MI+ G +PN  T   VL  C+    +D G Q    
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR 456

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
            + S+  +   + +A     ++ M  R+G    A ++    QV      + W +++ A  
Sbjct: 457 AIRSLLERSSSVSNA-----IITMYARSGSFPWARRMFD--QVCWRKETITWTSMIVALA 509

Query: 413 LHGRVDIAV 421
            HG+ + AV
Sbjct: 510 QHGQGEEAV 518



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 58/372 (15%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG----ARRVF 186
           +A +++ C   A+   G+ IH      G   +  +C++L+  YG+     G    ARR+F
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 187 D--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD------------------ 226
           D   +  RNV +W S++   A++ +  +A  +F E     RD                  
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM--PERDAVSWTVMVVGLNRAGRFG 146

Query: 227 --------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
                          P Q  L +V+++CA       G+  H  VV+ G      VA++++
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVL 206

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL--DLFNEMISRGIKPN 330
           +MY KCG    +  VF R+   SV ++ +M+  +    LGR  L   LF  M  R I   
Sbjct: 207 NMYGKCGDAETASTVFERMPVRSVSSWNAMV--SLNTHLGRMDLAESLFESMPGRSI--- 261

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM---LG--RTGRLDE 385
            V++  ++   + +GL  + ++    M  +  + PD    T V+     LG  R G+   
Sbjct: 262 -VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           AY L   +  +      +   L+S     G V+ A    +Q +E++  V  ++  L   Y
Sbjct: 321 AYILRTEMAYNSQ----VTNALISTYAKSGSVENARRIMDQSMETDLNVI-SFTALLEGY 375

Query: 446 ALAGEWENVHSL 457
              G+ E+   +
Sbjct: 376 VKIGDMESAREM 387


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/584 (35%), Positives = 336/584 (57%), Gaps = 17/584 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C HL  L +   +H+  LK+G L  N+F  + L++ Y   K+     ++FD M +  
Sbjct: 305 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRK 364

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           +  + +++ GY      + ALLLF +M  +  +  N  T A V+ AC         + IH
Sbjct: 365 IGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIH 424

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G   +  V ++L+DMY +   +D A+R+F  M  R++V+W +II  +  + +  
Sbjct: 425 GFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHE 484

Query: 212 EALEMFREFNYQSRD----------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           +AL M  +     R           +PN   L +++ +CA+L  L  GK  H   +++  
Sbjct: 485 DALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 544

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V SALVDMYAKCG +  S KVF++I   +V+T+  +++    +G  + ++D+   
Sbjct: 545 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRM 604

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M+ +G+KPN+VTF+ V  ACSHSG+V+EG++   +M + YG+ P + HY CVVD+LGR G
Sbjct: 605 MMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAG 664

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           R+ EAY+L   I  + D     W +LL A R+H  ++I   A+  LI+    VA+ YV L
Sbjct: 665 RVKEAYQLINLIPRNFDKAG-AWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 723

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           +N Y+ AG W     +R  MK  G+ KEPGCSW+E  D+ + F AG++   +  ++   L
Sbjct: 724 ANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYL 783

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
             L  +M++ GY+   T  V  +VE++ +E ++  HSE+LA+AFG+++   G  IR+ KN
Sbjct: 784 ETLWERMRKEGYI-PDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKN 842

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH   K IS +V+R+ ++RDV RFHHF+NG+CSCGD+W
Sbjct: 843 LRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 189/368 (51%), Gaps = 12/368 (3%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+ + K G+  ++ T+ N L+N Y +        ++FD + E N VS+ SL++   +  
Sbjct: 115 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 174

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLV 164
           + ++AL  F+ ML   V P+ FT  +V  ACS   M   L+ GKQ+H +    G + N  
Sbjct: 175 KWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSF 233

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           + ++LV MYGK   +  ++ +      R++V+W +++ +  QN Q  EALE  RE   + 
Sbjct: 234 IINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEG 293

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNY 283
            + P+   ++SV+ AC+ L  L +GK  H   +++G  + N  V SALVDMY  C  V  
Sbjct: 294 VE-PDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 352

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACS 342
             +VF+ + +  +  + +MI G A+      +L LF EM  S G+  N  T  GV+ AC 
Sbjct: 353 GCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACV 412

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            SG   +  + +     K G+  D      ++DM  R G++D A ++   ++   D   +
Sbjct: 413 RSGAFSKK-EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME---DRDLV 468

Query: 403 LWGTLLSA 410
            W T+++ 
Sbjct: 469 TWNTIITG 476



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 191/386 (49%), Gaps = 17/386 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  L+ G L N+F +N L+  Y ++ K   ++ L       ++V++ ++++      Q
Sbjct: 220 VHAYGLRKGEL-NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQ 278

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCS 167
              AL   ++M+   V P+ FT ++V+ ACS L  L TGK++H + ++      N  V S
Sbjct: 279 FLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 338

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY  C  V    RVFD M  R +  W ++I  +AQN    EAL +F E    +   
Sbjct: 339 ALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLL 398

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   +A V+ AC   G     +  HG VV+ G + +  V +AL+DMY++ G ++ + ++
Sbjct: 399 ANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRI 458

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM----------ISR-GIKPNDVTFVG 336
           F ++ +  +VT+ ++I G         +L + ++M           SR  +KPN +T + 
Sbjct: 459 FGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMT 518

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L +C+    + +G + + +   K  +  D    + +VDM  + G L  + K+   I   
Sbjct: 519 ILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI--- 574

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
           P    + W  ++ A  +HG    A++
Sbjct: 575 PIRNVITWNVIVMAYGMHGNSQDAID 600



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV-VCSSLV 170
           A+L +  M+   + P+ F F  ++KA + L D+  GKQIH H+  FG+  + V V ++LV
Sbjct: 77  AVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLV 136

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           ++Y KC D     +VFD +  RN VSW S+I +     +   ALE FR    +  + P+ 
Sbjct: 137 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVE-PSS 195

Query: 231 HMLASVINACASLGR---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             L SV  AC++      L+ GK  H   +R G E N  + + LV MY K G +  S  +
Sbjct: 196 FTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVL 254

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
                   +VT+ +++    +      +L+   EM+  G++P+  T   VL ACSH  ++
Sbjct: 255 LGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEML 314

Query: 348 DEG 350
             G
Sbjct: 315 RTG 317



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
           +P+     +++ A A L  +  GK  H  V + G   + V VA+ LV++Y KCG      
Sbjct: 90  KPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 149

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+RIS  + V++ S+I     +     +L+ F  M+   ++P+  T V V  ACS+  
Sbjct: 150 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFP 209

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKH---YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           +  EG+  +      YG+     +      +V M G+ G+L  +  L  S +    G  L
Sbjct: 210 M-PEGLL-MGKQVHAYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGSFE----GRDL 263

Query: 403 L-WGTLLSA 410
           + W T+LS+
Sbjct: 264 VTWNTVLSS 272


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 325/557 (58%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+K+G++++      L++ Y +      AR +F+ + + NVV++ +++  Y+   +
Sbjct: 429 IHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEK 488

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+  FQ +L   + P+  TF +++  C     L  GK + + I   GF+ +L + ++
Sbjct: 489 YDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNA 548

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV M+  C D+  A  +F+ M  R++VSW +II    Q+ +   A + F+    +S  +P
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQ-ESGVKP 607

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q     ++NACAS   L  G+  H ++  +  + + VV + L+ MY KCGS++ +  VF
Sbjct: 608 DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   +V ++TSMI G A++G G+ +L+LF +M   G+KP+ +TFVG L AC+H+GL+ 
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIK 727

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ H +SM + + I P  +HY C+VD+ GR G L EA +    +QV PD    LWG LL
Sbjct: 728 EGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDS--RLWGALL 784

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A ++H  V++A + + + +E +      YV LSN YA AG W+ V  +R  M   G+ K
Sbjct: 785 GACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVK 844

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PG SW+E+  + + F + +    +  E+ + L  L  +MK+ GYV   T  V  DVED 
Sbjct: 845 KPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYV-PDTRYVLHDVEDS 903

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSERLA+A+GL+  P    I I KNLR+C DCH   KLIS I +R  + RD 
Sbjct: 904 EKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDS 963

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++G CSCGDFW
Sbjct: 964 NRFHHFKDGVCSCGDFW 980



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 213/396 (53%), Gaps = 8/396 (2%)

Query: 37  LQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C   K+L     +H+ I  S    + F  N LI+ Y +   T  A+Q+FDEM + +V
Sbjct: 111 LQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDV 170

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            S+  L+ GY+   + + A  L ++M+ + V P+++TF  ++ AC+   ++  G ++ + 
Sbjct: 171 YSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSL 230

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G+  +L V ++L++M+ KC  VD A +VF+ +  R++++WTS+I   A++ Q  +A
Sbjct: 231 ILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQA 290

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
             +F+    +   +P++    S++ AC     L  GK  H  +   G +    V +AL+ 
Sbjct: 291 CNLFQVMEEEGV-QPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLS 349

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCGS+  + +VFN +   +VV++T+MI G A++G    +   FN+MI  GI+PN VT
Sbjct: 350 MYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVT 409

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ +L ACS    + +G Q  D +  K G I D +  T ++ M  + G L +A  + + I
Sbjct: 410 FMSILGACSRPSALKQGRQIHDRII-KAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
                   + W  +++A   H + D AV     L++
Sbjct: 469 S---KQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 221/430 (51%), Gaps = 8/430 (1%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSG 57
           M   L R+  F  A +      +      K  F+  L+ C H  +L     VH+ + + G
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVG 336

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
             +  +    L++ Y +    + A ++F+ +   NVVS+T+++AG+   G+ + A L F 
Sbjct: 337 LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFN 396

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           KM+ + + PN  TF +++ ACS  + L  G+QIH  I   G+  +  V ++L+ MY KC 
Sbjct: 397 KMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCG 456

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            +  AR VF+ +  +NVV+W ++I A+ Q+ +   A+  F+    +   +P+     S++
Sbjct: 457 SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL-LKEGIKPDSSTFTSIL 515

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           N C S   L  GK    +++R+G E +  + +ALV M+  CG +  +  +FN +    +V
Sbjct: 516 NVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLV 575

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++ ++I G  ++G  +F+ D F  M   G+KP+ +TF G+L+AC+    + EG + L ++
Sbjct: 576 SWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG-RRLHAL 634

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             +  +  D    T ++ M  + G +D+A+ +  ++   P      W ++++    HGR 
Sbjct: 635 ITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNL---PKKNVYSWTSMITGYAQHGRG 691

Query: 418 DIAVEASNQL 427
             A+E   Q+
Sbjct: 692 KEALELFCQM 701



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 203/404 (50%), Gaps = 8/404 (1%)

Query: 30  KAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+  L  C   K++     + S IL +G+ ++ F    LIN +++      A ++F+
Sbjct: 205 KYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFN 264

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            +   +++++TS++ G     Q + A  LFQ M    V P++  F +++KAC+    L  
Sbjct: 265 NLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQ 324

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GK++H  ++  G    + V ++L+ MY KC  ++ A  VF+L+  RNVVSWT++I   AQ
Sbjct: 325 GKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQ 384

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           + +  EA   F +   +S   PN+    S++ AC+    L  G+  H  ++++G   +D 
Sbjct: 385 HGRMEEAFLFFNKM-IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V +AL+ MYAKCGS+  +  VF RIS  +VV + +MI    ++     ++  F  ++  G
Sbjct: 444 VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           IKP+  TF  +L+ C     ++ G + + S+  + G   D      +V M    G L  A
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA 562

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
             L   +   P+   + W T+++    HG    A +    + ES
Sbjct: 563 MNLFNDM---PERDLVSWNTIIAGFVQHGENQFAFDYFKMMQES 603



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 190/364 (52%), Gaps = 26/364 (7%)

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
           N +V +K TQ A    + + +   +S   L+   +++  P I +             +  
Sbjct: 61  NEFVDIKNTQRANAFLNRLSKAGQLSEAMLV--LLSVDSPHIQI-------------HRQ 105

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T++++++ C    +L  G++IH HI+    Q ++ + + L+ MY KC + + A+++FD M
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             ++V SW  ++  + Q+ +  EA  +  +   Q   +P+++    ++NACA    +  G
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQM-VQDGVKPDKYTFVYMLNACADAKNVDKG 224

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
                +++ +G + +  V +AL++M+ KCG V+ + KVFN +    ++T+TSMI G A++
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARH 284

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
              + + +LF  M   G++P+ V FV +L AC+H   +++G + + +  ++ G+  +   
Sbjct: 285 RQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG-KRVHARMKEVGLDTEIYV 343

Query: 370 YTCVVDMLGRTGRLDEA---YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            T ++ M  + G +++A   + L K   V      + W  +++    HGR++ A    N+
Sbjct: 344 GTALLSMYTKCGSMEDALEVFNLVKGRNV------VSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 427 LIES 430
           +IES
Sbjct: 398 MIES 401


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 329/562 (58%), Gaps = 9/562 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   +KSG  S+    N L+N Y ++     AR++F++M   +++S+ S+++       
Sbjct: 308 VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 367

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVI-----KACSMLADLITGKQIHTHIETFGFQYNL 163
            + ++ LF  +L   + P+ FT A++      KAC  L  L  GKQIH H    GF  +L
Sbjct: 368 EEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 427

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V S ++DMY KC D+  A  VF+ +   + V+WTS+I     N    +AL ++     Q
Sbjct: 428 HVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR-Q 486

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           SR  P+++  A++I A + +  L  G+  H  V++  C  +  V ++LVDMYAKCG++  
Sbjct: 487 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 546

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + ++F +++  ++  + +M+VG A++G    +++LF  M S GI+P+ V+F+G+L ACSH
Sbjct: 547 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 606

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +GL  E  ++L SM   YGI P+ +HY+C+VD LGR G + EA K+ +++         +
Sbjct: 607 AGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS--I 664

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
              LL A R+ G V+     + +L       + AYV LSN YA A  W++V   R  MKR
Sbjct: 665 NRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKR 724

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             + K+PG SW+++++  + F   +    +   +   + E+ + ++E GYV   T  V +
Sbjct: 725 KNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV-PDTEFVLL 783

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DVEDE +E  +  HSE+LA+A+GLIS P   TIR++KNLR+C DCH+  K IS + ER+ 
Sbjct: 784 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 843

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           V+RD NRFHHFR+G CSCGD+W
Sbjct: 844 VLRDANRFHHFRDGVCSCGDYW 865



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 194/386 (50%), Gaps = 12/386 (3%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L +   VH   +K G   + F    L+N Y +  + + AR LFD M E +VV +  ++ G
Sbjct: 199 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 258

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGFQ 160
           Y+ +G  + A  LF +   + + P+EF+   ++  C  +   DL  GKQ+H      G  
Sbjct: 259 YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD 318

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            ++ V +SLV+MY K      AR VF+ M   +++SW S+I + AQ++   E++ +F + 
Sbjct: 319 SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL 378

Query: 221 NYQSRDRPNQHMLASVI-----NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
            ++   +P+   LAS+       AC  L  L  GK  H   +++G + +  V S ++DMY
Sbjct: 379 LHEGL-KPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY 437

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
            KCG +  +  VFN IS P  V +TSMI G    G    +L +++ M    + P++ TF 
Sbjct: 438 IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 497

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            ++ A S    +++G Q L +   K   + D    T +VDM  + G +++AY+L K + V
Sbjct: 498 TLIKASSCVTALEQGRQ-LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNV 556

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAV 421
                  LW  +L     HG  + AV
Sbjct: 557 R---NIALWNAMLVGLAQHGNAEEAV 579



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 199/394 (50%), Gaps = 17/394 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI---- 104
            H+ I+ SG   + F  N+L+  Y +      ARQ+FD   E ++V++ +++  Y     
Sbjct: 99  THARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 158

Query: 105 -NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
            N G  Q  L LF+ +  +L      T A V+K C     L   + +H +    G ++++
Sbjct: 159 SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDV 218

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +LV++Y KC  +  AR +FD M  R+VV W  ++  + Q     EA ++F EF ++
Sbjct: 219 FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF-HR 277

Query: 224 SRDRPNQHMLASVINAC--ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           S  RP++  +  ++N C  A    L  GK  HG+ V+SG + +  VA++LV+MY+K G  
Sbjct: 278 SGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCA 337

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN-----DVTFVG 336
            ++ +VFN + +  ++++ SMI   A+  L   S++LF +++  G+KP+      +T   
Sbjct: 338 YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLAT 397

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
              AC    L+D+G Q + +   K G   D    + ++DM  + G +  A  +   I   
Sbjct: 398 AAKACGCLVLLDQGKQ-IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP 456

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            D   + W +++S    +G  D A+   +++ +S
Sbjct: 457 DD---VAWTSMISGCVDNGNEDQALRIYHRMRQS 487



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 7/245 (2%)

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           +L+ GK  H  I   G   +  + ++L+ MY KC  +  AR+VFD    R++V+W +I+ 
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 203 AHA-----QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           A+A      +    E L +FR     S     +  LA V+  C + G L + +  HG  +
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLR-ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI 210

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           + G E++  V+ ALV++Y+KCG +  +  +F+ +    VV +  M+ G  + GL + +  
Sbjct: 211 KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQ 270

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVD-EGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           LF+E    G++P++ +   +L+ C  +G  D E  + +  +  K G+  D      +V+M
Sbjct: 271 LFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNM 330

Query: 377 LGRTG 381
             + G
Sbjct: 331 YSKMG 335



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L+ GK  H  +V SG   +  +++ L+ MY+KCGS++ + +VF+      +VT+ + I+G
Sbjct: 93  LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA-ILG 151

Query: 306 A------AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV--DEGIQHLDSM 357
           A      +  G  +  L LF  + +       +T   VL  C +SG +   EG+      
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVH---GY 208

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
             K G+  D      +V++  + GR+ +A
Sbjct: 209 AIKIGLEWDVFVSGALVNIYSKCGRMRDA 237


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 352/585 (60%), Gaps = 19/585 (3%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLN---HLINCYVRLKKTQVAR 82
           T+  F   ++ C ++  ++    +H +++K+G   + F LN    L+  Y +  +   A 
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNG---SDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 83  QLFDEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           +LF  M    NVVS+T++++GY+  G+   A+ LF +M    V PN FT++T++ A +  
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAA- 408

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
              ++  QIH  +    ++ +  V ++L D Y K  D + A ++F+L+  +++V+W++++
Sbjct: 409 ---VSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAML 465

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS-LGRLVSGKVAHGVVVRSG 260
             +AQ      A+++F +   +  + PN+   +SV+NACA+    +  GK  H   ++SG
Sbjct: 466 SGYAQMGDIEGAVKIFLQLAKEGVE-PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSG 524

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
                 V+SALV MYAK G++  +++VF R  +  +V++ SMI G A++G G+ SL +F 
Sbjct: 525 FSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFE 584

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EM S+ ++ + +TF+GV+ AC+H+GLV+EG ++ D M + Y I+P  +HY+C+VD+  R 
Sbjct: 585 EMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRA 644

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G L++A  L   +      G  +W TLL+A R+H  V +   A+ +LI    Q + AYV 
Sbjct: 645 GMLEKAMDLINKMPF--PAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVL 702

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA AG W+    +R  M    + KE G SW+E++++T++F AG+    +   +   
Sbjct: 703 LSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLK 762

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L EL  ++K+ GY    T  V  DVE+E +E I+  HSERLA+AFGLI+ P G  I+I+K
Sbjct: 763 LEELSIRLKDAGYY-PDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVK 821

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH V KLIS I  RD VVRD NRFHHF+ GSCSCGD+W
Sbjct: 822 NLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 196/389 (50%), Gaps = 14/389 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH + +K GF+ +      L++ Y++ +  +   ++FDEM   NVVS+TSL+AGY   G 
Sbjct: 114 VHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGL 173

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF +M    + PN FTFA V+   +    +  G Q+HT +   G    + V +S
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +V+MY K   V  A+ VFD M  RN VSW S+I     N    EA E+F     +   + 
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV-KL 292

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            Q + A+VI  CA++  +   K  H  V+++G +F+  + +AL+  Y+KC  ++ + K+F
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF 352

Query: 289 NRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
             +    +VV++T++I G  + G    +++LF +M   G++PN  T+  +L A   +  V
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA---NAAV 409

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
                H   +   Y   P     T + D   + G  +EA   AK  ++  +   + W  +
Sbjct: 410 SPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEA---AKIFELIDEKDIVAWSAM 464

Query: 408 LSA----SRLHGRVDIAVEASNQLIESNQ 432
           LS       + G V I ++ + + +E N+
Sbjct: 465 LSGYAQMGDIEGAVKIFLQLAKEGVEPNE 493



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 179/380 (47%), Gaps = 20/380 (5%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           ++QLFDE  +  +     L+  +    Q + AL LF  +  +    +  + + V+K C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L D I GKQ+H      GF  ++ V +SLVDMY K   V+   RVFD M  +NVVSWTS+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +  + QN    +AL++F +   +   +PN    A+V+   A+ G +  G   H +V++SG
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            +    V +++V+MY+K   V+ +  VF+ + N + V++ SMI G    GL   + +LF 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M   G+K     F  V+  C++   +    Q L     K G   D    T ++    + 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ-LHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 381 GRLDEAYKL---AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA----------SNQL 427
             +D+A+KL      +Q       + W  ++S    +GR D A+             N  
Sbjct: 343 SEIDDAFKLFCMMHGVQ-----NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHF 397

Query: 428 IESNQQVANAYVTLSNTYAL 447
             S    ANA V+ S  +AL
Sbjct: 398 TYSTILTANAAVSPSQIHAL 417


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 330/559 (59%), Gaps = 6/559 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH  +LK+ +  + +    L+  Y R      A + F +M + +V+ ++ +++ +   G
Sbjct: 168 TVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSG 227

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           Q + AL +F +M    V PN+FTF++V++A + +  L   K IH H    G   ++ V +
Sbjct: 228 QSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSN 287

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQSRD 226
           +L+  Y KC  ++ +  +F+ +  RN VSW +IIV++ Q   G  AL +F     YQ + 
Sbjct: 288 ALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQ- 346

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
              +   +S++ ACA+L  L  G   H +  ++    +  V +AL+DMYAKCGS+  +  
Sbjct: 347 -ATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARF 405

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ +     V++ ++I G + +GLG  ++ +FN M     KP+++TFVGVL ACS++G 
Sbjct: 406 MFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGR 465

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +DEG Q+  SM + YGI P  +HYTC+V ++GR+G LD+A K  + I  +P    ++W  
Sbjct: 466 LDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP--SVMIWRA 523

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A  +H  V++   ++ +++E   +   ++V LSN YA A  W NV  +R  MKR G+
Sbjct: 524 LLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGV 583

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW+E +   + F   +        +  +L  L  K ++ GY   +   V +DVE
Sbjct: 584 KKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGY-SPQLNAVLLDVE 642

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D+ +E ++ LHSERLALAFGL+ +P G  IRI+KNLR+C DCH V KLIS IV RD +VR
Sbjct: 643 DDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVR 702

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D+NRFHHF NGSCSC D+W
Sbjct: 703 DMNRFHHFENGSCSCADYW 721



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 198/383 (51%), Gaps = 7/383 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  +LK G+ SNTF    LI+ Y       +AR++FDE+   ++VS+T ++A Y     
Sbjct: 68  VHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDC 127

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  F +M      PN FTFA V+KAC  L +   GK +H  +    ++ +L V   
Sbjct: 128 FSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVG 187

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+++Y +C D D A R F  M   +V+ W+ +I   AQ+ Q  +ALE+F +   ++   P
Sbjct: 188 LLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR-RAFVIP 246

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ   +SV+ A A +  L   K  HG  +++G   +  V++AL+  YAKCG +  S ++F
Sbjct: 247 NQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELF 306

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +S+ + V++ ++IV   + G G  +L LF+ M+   ++  +VT+  +L AC+    ++
Sbjct: 307 EALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALE 366

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            G+Q H  +    YG   D      ++DM  + G + +A  +   + +      + W  +
Sbjct: 367 LGLQVHCLTAKTIYG--QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRD---KVSWNAI 421

Query: 408 LSASRLHGRVDIAVEASNQLIES 430
           +    +HG    A++  N + E+
Sbjct: 422 ICGYSMHGLGVEAIKMFNLMKET 444



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 1/257 (0%)

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +FDEM E N VS+ +L+ GY    +   A  LF ++ G     N F F TV+K    +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
              G+ +H  +   G+  N  + ++L+D Y     V  AR VFD +  +++VSWT +I +
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           +A+N    EALE F +       +PN    A V+ AC  L    +GK  H  V+++  E 
Sbjct: 122 YAENDCFSEALEFFSQMRVAGF-KPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V   L+++Y +CG  + + + F  +    V+ ++ MI   A+ G    +L++F +M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 324 SRGIKPNDVTFVGVLHA 340
              + PN  TF  VL A
Sbjct: 241 RAFVIPNQFTFSSVLQA 257


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 336/607 (55%), Gaps = 41/607 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV-------------RLKKTQ 79
           F    + C+ L  L  +H+    SG  ++ FT NHL+  Y              R+ +  
Sbjct: 47  FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 106

Query: 80  V------------------ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           V                  AR+LFDEM E NV ++ +++AG  N+G  + +L  F  M  
Sbjct: 107 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 166

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
             + P+EF   +V + C+ L D++TG+Q+H ++   G   ++ V SSL  MY +C  +  
Sbjct: 167 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 226

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE---MFREFNYQSRDRPNQHMLASVIN 238
              V  ++   ++VS  +II    QN     ALE   M R     +    +     S I+
Sbjct: 227 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAA----DVVTFVSAIS 282

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           +C+ L  L  G+  HG V+++G +    V + LV MY++CG +  S++VF          
Sbjct: 283 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 342

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
            ++MI     +G G+ +++LF +M++ G +P+DVTF+ +L+ACSHSGL +EG+   + M 
Sbjct: 343 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 402

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG+ P  KHYTCVVD+LGR+G LDEA  L  S+ + PDG  ++W TLLSA +     D
Sbjct: 403 KTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG--VIWKTLLSACKTQKNFD 460

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A   + ++IE +   + +YV LSN  A +  W +V  +R  M+   + KEPG SWVE++
Sbjct: 461 MAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELK 520

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
              + F  G+    R  E+   L E+  K+++ GY      +V  D+EDE +E  +  HS
Sbjct: 521 GHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGY-SPDMSMVLHDMEDEEKEVSLSHHS 579

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AF  +S+P+G+ IR+MKNLR+C DCH   KL+S +  R+ VVRDV+RFHHF++G 
Sbjct: 580 EKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGR 639

Query: 599 CSCGDFW 605
           CSC D+W
Sbjct: 640 CSCRDYW 646


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 326/559 (58%), Gaps = 26/559 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VHS  +KS F       N L++ Y +      A ++F++M E NVVS+TS++AGY   G
Sbjct: 272 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +   A+ L Q+M    V  +     +++ AC+    L  GK +H +I+    + NL VC+
Sbjct: 332 RSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++ A  VF  M  ++++SW ++I                         +
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------------GELK 429

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +A V+ ACASL  L  GK  HG ++R+G   +  VA+ALVD+Y KCG +  +  +
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I +  +V++T MI G   +G G  ++  FNEM   GI+P++V+F+ +L+ACSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +    M   + I P  +HY C+VD+L RTG L +AY+  +++ + PD    +WG L
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDA--TIWGAL 607

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   R +  +++A + + ++ E   +    YV L+N YA A +WE V  LR ++ + G+ 
Sbjct: 608 LCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLR 667

Query: 468 KEPGCSWVEIRDQTYAFYAG-NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
           K PGCSW+EI+ +   F +G N+       + SLL+++ RKMKE G+   KT    ++ +
Sbjct: 668 KNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHF-PKTKYALINAD 726

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  +E  +  HSE+LA+AFGL+++P   TIR+ KNLR+C DCH++ K +S    R+ V+R
Sbjct: 727 EMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLR 786

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G CSC  FW
Sbjct: 787 DSNRFHHFKDGYCSCRGFW 805



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 181/352 (51%), Gaps = 26/352 (7%)

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
           K+ + A +LFD++ + +V+S+ S+++GY++ G  +  L ++++M+   +  +  T  +V+
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
             C+    L  GK +H+      F+  +   ++L+DMY KC D+DGA RVF+ MG RNVV
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWTS+I  + ++ +   A+++ ++   +   + +   + S+++ACA  G L +GK  H  
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGV-KLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +  +  E N  V +AL+DMYAKCGS+  ++ VF+ +    ++++ +MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI------------ 425

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
                      +KP+  T   VL AC+    ++ G + +     + G   D      +VD
Sbjct: 426 ---------GELKPDSRTMACVLPACASLSALERG-KEIHGYILRNGYSSDRHVANALVD 475

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +  + G L  A  L   I   P    + W  +++   +HG  + A+   N++
Sbjct: 476 LYVKCGVLGLARLLFDMI---PSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 524



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 60/341 (17%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF--- 186
           T+ +V++ C+ L     GK++H+ I++     +  +   LV  Y  C D+   RRVF   
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 187 ------------------------------------------------DLMGCRNVVSWT 198
                                                           D +  R+V+SW 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I  +  N      L ++++  Y   D  +   + SV+  CA+ G L  GK  H + ++
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGID-VDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           S  E     ++ L+DMY+KCG ++ + +VF ++   +VV++TSMI G  + G    ++ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--VVDM 376
             +M   G+K + V    +LHAC+ SG +D G    D  Y K   + ++  + C  ++DM
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD--YIKANNM-ESNLFVCNALMDM 396

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             + G ++ A  +  ++ V      + W T++   +   R 
Sbjct: 397 YAKCGSMEAANSVFSTMVVKD---IISWNTMIGELKPDSRT 434


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/594 (35%), Positives = 331/594 (55%), Gaps = 43/594 (7%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+ ++++    N      L++ Y    +   A+++F+ M E N  S+ S++ GY   G+
Sbjct: 501  IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE 560

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             Q AL LF++M  N + P+ F+ ++++ +C  L+D   G+++H  I     +   ++   
Sbjct: 561  TQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV 620

Query: 169  LVDMYGKCNDVD-------------------------------GARRVFDLMGCRNVVSW 197
            LVDMY KC  +D                                A+ +FD M  RN   W
Sbjct: 621  LVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALW 680

Query: 198  TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
             SI+  +A      E+   F E   +S    +   + +++N C+SL  L  G   H +++
Sbjct: 681  NSILAGYANKGLKKESFNHFLEM-LESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLII 739

Query: 258  RSG---CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            + G   C    V+ +ALVDMY+KCG++  +  VF+ ++  ++V++ +MI G +K+G  + 
Sbjct: 740  KKGFVNCSV--VLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKE 797

Query: 315  SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
            +L L+ EM  +G+ PN+VTF+ +L ACSH+GLV+EG++   SM   Y I   A+HYTC+V
Sbjct: 798  ALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMV 857

Query: 375  DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
            D+LGR GRL++A +  + + ++P+     WG LL A R+H  +D+   A+ +L E + Q 
Sbjct: 858  DLLGRAGRLEDAKEFVEKMPIEPEVST--WGALLGACRVHKDMDMGRLAAQRLFELDPQN 915

Query: 435  ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
               YV +SN YA AG W+ V  +R  MK  G+ K+PG SW+EI  +   F+AG+    + 
Sbjct: 916  PGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKT 975

Query: 495  SEVLSLLRELERKMKERGYVGGKTGLVFVDVED---EAREEIVGLHSERLALAFGLISIP 551
             E+ + LR L  + K  GY+   T  +  +V+D   E  EE +  HSERLAL+ GLIS+P
Sbjct: 976  EEIYNNLRHLTLQSKGLGYI-PDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLP 1034

Query: 552  KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            K  TIR+ KNLR+C DCH   K IS I  R  + RD NRFHHF NG CSCGD+W
Sbjct: 1035 KKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 217/422 (51%), Gaps = 9/422 (2%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLK 76
           R  K   C     F   L+ C  L S      VHS+++  GF  +TF  N LI+ Y +  
Sbjct: 266 RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCD 325

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
             +   ++FDEM E N V++ S+++     G    AL+LF +M  +    N F   +++ 
Sbjct: 326 DEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILM 385

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           A + LAD+  G+++H H+       ++++ S+LVDMY KC  V+ A +VF  +  RN VS
Sbjct: 386 ASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS 445

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           + +++  + Q  +  EALE++ +   +   +P+Q    +++  CA+      G+  H  +
Sbjct: 446 YNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL 505

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +R+    N +V + LV MY++CG +NY+ ++FNR++  +  ++ SMI G  + G  + +L
Sbjct: 506 IRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEAL 565

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            LF +M   GIKP+  +   +L +C       +G + L +   +  +  +      +VDM
Sbjct: 566 RLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG-RELHNFIVRNTMEEEGILQVVLVDM 624

Query: 377 LGRTGRLDEAYKL-AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
             + G +D A+K+  ++I+ D     +L   ++SA    GR + A    +Q+ + N  + 
Sbjct: 625 YAKCGSMDYAWKVYDQTIKKD----VILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALW 680

Query: 436 NA 437
           N+
Sbjct: 681 NS 682



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 201/380 (52%), Gaps = 6/380 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           + S ++K+G   N F    L++ Y R      A    DE+   +VV++ +++AGY+ +  
Sbjct: 197 LQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILS 256

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  +F +ML   V P+ FTFA+ ++ C  L     GKQ+H+ +   GF+ +  V ++
Sbjct: 257 WEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNA 316

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC+D +   +VFD MG RN V+W SII A AQ    ++AL +F     +S  + 
Sbjct: 317 LIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ-ESGYKS 375

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  L S++ A A L  +  G+  HG +VR+    + ++ SALVDMY+KCG V  + +VF
Sbjct: 376 NRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF 435

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLV 347
             +   + V+Y +++ G  + G    +L+L+++M S  GI+P+  TF  +L  C++    
Sbjct: 436 RSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRND 495

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G Q    + R   I  +    T +V M    GRL+ A ++   +    +     W ++
Sbjct: 496 NQGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYAKEIFNRM---AERNAYSWNSM 551

Query: 408 LSASRLHGRVDIAVEASNQL 427
           +   + +G    A+    Q+
Sbjct: 552 IEGYQQNGETQEALRLFKQM 571



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 199/421 (47%), Gaps = 34/421 (8%)

Query: 23  KRSSCHTKA-------HFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCY 72
           K +S HTK         +   +Q+C    S     S+H++++ +G+  + + +  ++  Y
Sbjct: 57  KPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLY 116

Query: 73  VR---LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
            R   L     AR+LF+EM E N+ ++ +++  Y  +      L L+ +M G+  + ++F
Sbjct: 117 ARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKF 176

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF +VIKAC  + D+   +Q+ + +   G   NL V  +LVD Y +   +D A    D +
Sbjct: 177 TFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI 236

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR-------PNQHMLASVINACAS 242
              +VV+W ++I  + +     EA  +F        DR       P+    AS +  C +
Sbjct: 237 EGTSVVTWNAVIAGYVKILSWEEAWGIF--------DRMLKIGVCPDNFTFASALRVCGA 288

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L     GK  H  ++  G + +  V +AL+DMYAKC       KVF+ +   + VT+ S+
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 348

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHLDSMYRKY 361
           I   A++G    +L LF  M   G K N      +L A   +GL D G  + L     + 
Sbjct: 349 ISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS--AGLADIGKGRELHGHLVRN 406

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            +  D    + +VDM  + G ++EA+++ +S+    +   + +  LL+     G+ + A+
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLL---ERNEVSYNALLAGYVQEGKAEEAL 463

Query: 422 E 422
           E
Sbjct: 464 E 464


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 329/557 (59%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K+  ++++F    LI+ Y R +  + A  LF      ++V++ ++M+GY     
Sbjct: 446 IHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHD 504

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               L LF  M       ++FT ATV+K C  L  +  GKQ+H +    G+  +L V S 
Sbjct: 505 GHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSG 564

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++DMY KC D+  A+  FD +   + V+WT++I    +N +   AL +F +        P
Sbjct: 565 ILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGV-LP 623

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++  +A++  A + L  L  G+  H   ++  C  +  V ++LVDMYAKCGS++ +  +F
Sbjct: 624 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLF 683

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            RI   ++  + +M+VG A++G G+ +L LF +M S GIKP+ VTF+GVL ACSHSGLV 
Sbjct: 684 KRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVS 743

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  +++ SM+R YGI P+ +HY+C+ D LGR G + EA  L  S+ ++      ++ TLL
Sbjct: 744 EAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASAS--MYRTLL 801

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+ G  +     + +L+E     ++AYV LSN YA A +W+ +   R+ MK   + K
Sbjct: 802 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 861

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PG SW+E++++ + F   +    +   +   ++++ R +K+ GYV  +T    VDVE+E
Sbjct: 862 DPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYV-PETDFTLVDVEEE 920

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+AFGL+S P    IR++KNLR+C DCH+  K IS + +R+ V+RD 
Sbjct: 921 EKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDA 980

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F++G CSCGD+W
Sbjct: 981 NRFHRFKDGICSCGDYW 997



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 221/468 (47%), Gaps = 43/468 (9%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L     L SLA    VH   LK G        N LIN Y +L+K  +AR +F+ M 
Sbjct: 325 FILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMS 384

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-LITGK 148
           E +++S+ S++AG         A+ LF ++L   + P+ +T  +V+KA S L + L   K
Sbjct: 385 ERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSK 444

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYG-----KCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           QIH H        +  V ++L+D Y      K  +V   R  FDL      V+W +++  
Sbjct: 445 QIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFDL------VAWNAMMSG 498

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           + Q+  GH+ LE+F   + Q  +R +   LA+V+  C  L  +  GK  H   ++SG + 
Sbjct: 499 YTQSHDGHKTLELFALMHKQG-ERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL 557

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V+S ++DMY KCG ++ +   F+ I  P  V +T++I G  + G    +L +F++M 
Sbjct: 558 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMR 617

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
             G+ P++ T   +  A S    +++G Q H +++  K     D    T +VDM  + G 
Sbjct: 618 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANAL--KLNCTSDPFVGTSLVDMYAKCGS 675

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL----IESNQ------ 432
           +D+AY L K I++        W  +L     HG    A++   Q+    I+ ++      
Sbjct: 676 IDDAYCLFKRIEM---MNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGV 732

Query: 433 --------QVANAYV---TLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
                    V+ AY    ++   Y +  E E+   L   + R G+ KE
Sbjct: 733 LSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKE 780



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 167/336 (49%), Gaps = 7/336 (2%)

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           ++S   +++GY++ GQ    L  F  M+ + +  ++ TF  V+     L  L  G+Q+H 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                G    L V +SL++MY K   +  AR VF+ M  R+++SW S+I   AQ+    E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASAL 271
           A+ +F +   +   +P+ + + SV+ A +SL   +S  K  H   +++    +  V++AL
Sbjct: 407 AVCLFMQL-LRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTAL 465

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +D Y++   +  ++ +F R +N  +V + +M+ G  +   G  +L+LF  M  +G + +D
Sbjct: 466 IDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDD 524

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
            T   VL  C     +++G Q + +   K G   D    + ++DM  + G +  A     
Sbjct: 525 FTLATVLKTCGFLFAINQGKQ-VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFD 583

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           SI V  D   + W TL+S    +G  + A+   +Q+
Sbjct: 584 SIPVPDD---VAWTTLISGCIENGEEERALHVFSQM 616



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 14/202 (6%)

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           +DL+ GK  H  I          + ++L+ MY KC  +  ARRVFD M  R++VSW SI+
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 202 VAHAQNAQG-----HEALEMFR----EFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
            A+AQ+++G      EA  +FR    +  Y SR       L+ ++  C   G + + +  
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSR-----MTLSPMLKLCLHSGYVCASESF 174

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG   + G + +D VA ALV++Y K G V     +F  +    VV +  M+    + G  
Sbjct: 175 HGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFK 234

Query: 313 RFSLDLFNEMISRGIKPNDVTF 334
             ++DL +   + G+ PN++T 
Sbjct: 235 EEAIDLSSAFHTSGLHPNEITL 256



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 174/414 (42%), Gaps = 79/414 (19%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            H+ IL        F +N+LI+ Y +      AR++FD+M E ++VS+ S++A Y    +
Sbjct: 68  THARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSE 127

Query: 109 PQI-----ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
             +     A LLF+ +  ++V+ +  T + ++K C     +   +  H +    G   + 
Sbjct: 128 GVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDD 187

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +LV++Y K   V   R +F+ M  R+VV W  ++ A+ +     EA+++   F + 
Sbjct: 188 FVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF-HT 246

Query: 224 SRDRPNQHML------------------------ASVINACASLGRLVSGKVAHGV---- 255
           S   PN+  L                        AS ++   S  +++SG +  G     
Sbjct: 247 SGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSAL 306

Query: 256 ------VVRSGCE-----FNDVVASAL------------------------------VDM 274
                 +V S  E     F  V+A+A+                              ++M
Sbjct: 307 LKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINM 366

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y K   +  +  VFN +S   ++++ S+I G A+  L   ++ LF +++  G+KP+  T 
Sbjct: 367 YCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTM 426

Query: 335 VGVLHACSH--SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
             VL A S    GL      H+ ++  K   + D+   T ++D   R   + EA
Sbjct: 427 TSVLKAASSLPEGLSLSKQIHVHAI--KTNNVADSFVSTALIDAYSRNRCMKEA 478


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/557 (35%), Positives = 327/557 (58%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++++K+GF  N +  + LI+ Y +  K   A  +   + E +VVS+T+L++GY     
Sbjct: 437 IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNL 496

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  F++ML   +  +   F++ I AC+ +  L  G+QIH      G+  +L + ++
Sbjct: 497 FAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNA 556

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV +Y +C  +  A   F+ +  ++ +SW  +I   AQ+    +AL++F + N +++   
Sbjct: 557 LVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMN-RAKLEA 615

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +     S ++A A++  +  GK  H ++++ G + +  V++AL+  YAKCGS+  + + F
Sbjct: 616 SFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREF 675

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   + V++ +MI G +++G G  +++LF +M   G  PN VTFVGVL ACSH GLV 
Sbjct: 676 CEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVT 735

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+ + +SM +++G++P   HY CVVD++ R G L  A K  + + ++PD    +W TLL
Sbjct: 736 KGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDA--TIWRTLL 793

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA  +H  V++   A+  L+E   + +  YV LSN YA++G+W+     R  M+  G+ K
Sbjct: 794 SACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKK 853

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E+++  +AFY G+ L     ++   L EL +K  E GY   +  L+  DVE E
Sbjct: 854 EPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLL-NDVEQE 912

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++  V +HSE+LA+ FGL+S+   + I +MKNLR+C+DCH   K +S I  R  +VRD 
Sbjct: 913 QKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDA 972

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF  G CSC D+W
Sbjct: 973 YRFHHFEGGICSCKDYW 989



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 217/439 (49%), Gaps = 11/439 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ + K G    T+  N L+  Y R+     A ++F +M   + VS+ SL++G    G 
Sbjct: 235 LHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGF 294

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF KM  + + P+  T A+++ AC+    L  G+Q+H+++   G   +++V  +
Sbjct: 295 SDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGA 354

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y  C+D+  A  +F      NVV W  ++VA  +     E+  +FR+   +    P
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGL-IP 413

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ    S++  C S+G L  G+  H  V+++G +FN  V S L+DMYAK G ++ +  + 
Sbjct: 414 NQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVIL 473

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             ++   VV++T++I G A++ L   +L  F EM++RGI+ +++ F   + AC+    ++
Sbjct: 474 RTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALN 533

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H  S    Y    D      +V +  R GR+ EAY   + I        + W  L
Sbjct: 534 QGRQIHAQSYVSGYS--EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDS---ISWNGL 588

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           +S     G  + A++   Q+  +  ++  ++ T  +  + A    N+   + +     I 
Sbjct: 589 ISGFAQSGYCEDALKVFAQM--NRAKLEASFFTFGSAVSAAANIANIK--QGKQIHAMII 644

Query: 468 KEPGCSWVEIRDQTYAFYA 486
           K    S +E+ +    FYA
Sbjct: 645 KRGFDSDIEVSNALITFYA 663



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 203/414 (49%), Gaps = 13/414 (3%)

Query: 29  TKAHFIQQLQECK-HLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           T+  F   L+ C  H I +     +H+ I+  G L +    N LI  Y +      AR++
Sbjct: 110 TEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKV 169

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FD +   + VS+ ++++G+   G  + A+ LF +M    ++P  + F++V+  C+ +   
Sbjct: 170 FDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLF 229

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
             G+Q+H  +  +G      VC++LV +Y +  +   A +VF  M  ++ VS+ S+I   
Sbjct: 230 DVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGL 289

Query: 205 AQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
           AQ      ALE+F +     RD  +P+   +AS+++ACAS G L  G+  H  V+++G  
Sbjct: 290 AQQGFSDGALELFTKMK---RDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS 346

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            + +V  AL+D+Y  C  +  + ++F      +VV +  M+V   K      S  +F +M
Sbjct: 347 SDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQM 406

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
             +G+ PN  T+  +L  C+  G +D G + + +   K G   +    + ++DM  + G+
Sbjct: 407 QIKGLIPNQFTYPSILRTCTSVGALDLG-EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGK 465

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LD A+ + +++  D     + W  L+S    H     A++   +++    Q  N
Sbjct: 466 LDTAHVILRTLTEDD---VVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDN 516



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 200/420 (47%), Gaps = 9/420 (2%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           + + R   +  C T A  +        L     +HS ++K+G  S+      L++ YV  
Sbjct: 303 TKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNC 362

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
              + A ++F      NVV +  ++  +  +     +  +F++M    + PN+FT+ +++
Sbjct: 363 SDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSIL 422

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           + C+ +  L  G+QIHT +   GFQ+N+ VCS L+DMY K   +D A  +   +   +VV
Sbjct: 423 RTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVV 482

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWT++I  +AQ+    EAL+ F+E   +     N    +S I+ACA +  L  G+  H  
Sbjct: 483 SWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIG-FSSAISACAGIQALNQGRQIHAQ 541

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
              SG   +  + +ALV +YA+CG +  +   F +I     +++  +I G A+ G    +
Sbjct: 542 SYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDA 601

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L +F +M    ++ +  TF   + A ++   + +G Q + +M  K G   D +    ++ 
Sbjct: 602 LKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALIT 660

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
              + G +++A +    +   P+   + W  +++    HG  + AV     L E  +QV 
Sbjct: 661 FYAKCGSIEDARREFCEM---PEKNDVSWNAMITGYSQHGYGNEAV----NLFEKMKQVG 713



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 195/383 (50%), Gaps = 15/383 (3%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L ECK L      H +ILK GF + +   N L++ Y  L       ++F++M   +V S+
Sbjct: 26  LVECKKL------HGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSW 79

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS-MLADLITGKQIHTHIE 155
             +++G++        L LF  M+   V P E +FA+V++ACS     +   +QIH  I 
Sbjct: 80  DKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARII 139

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G   + ++ + L+ +Y K   +  AR+VFD +  ++ VSW ++I   +QN    EA+ 
Sbjct: 140 CHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIH 199

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +F E  + +   P  ++ +SV++ C  +     G+  H +V + G      V +ALV +Y
Sbjct: 200 LFCEM-HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLY 258

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           ++  +   ++KVF+++ +   V++ S+I G A+ G    +L+LF +M    +KP+ VT  
Sbjct: 259 SRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVA 318

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            +L AC+ +G + +G + L S   K GI  D      ++D+      +  A+++  + Q 
Sbjct: 319 SLLSACASNGALCKG-EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQT 377

Query: 396 DPDGGPLLWGTLLSASRLHGRVD 418
           +     +LW  +L A    G++D
Sbjct: 378 E---NVVLWNVMLVA---FGKLD 394



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%)

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           +++ C + G LV  K  HG +++ G     V+ + LVD+Y   G ++   KVF  + N S
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           V ++  +I G  +  +    LDLF+ MI   + P +++F  VL ACS
Sbjct: 76  VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS 122


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/558 (37%), Positives = 317/558 (56%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  + +GF  +    N +++ Y +  +    R LFDEM E + VSY  +++ Y    Q
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +L  F++M         F FAT++   + L+ L  G+Q+H           L V +S
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNS 391

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC   + A  +F  +  R  VSWT++I  + Q       L++F +    S  R 
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR-GSNLRA 450

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   A+V+ A AS   L+ GK  H  ++RSG   N    S LVDMYAKCGS+  + +VF
Sbjct: 451 DQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVF 510

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + + + V++ ++I   A  G G  ++  F +MI  G++P+ V+ +GVL ACSH G V+
Sbjct: 511 EEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVE 570

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G ++  +M   YGI P  KHY C++D+LGR GR  EA KL   +  +PD   ++W ++L
Sbjct: 571 QGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPD--EIMWSSVL 628

Query: 409 SASRLHGRVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           +A R+H    +A  A+ +L    + + A AYV++SN YA AGEWE V  ++  M+  GI 
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K P  SWVE+  + + F + +     G E++  + EL  +++  GY    T  V  DV++
Sbjct: 689 KVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGY-KPDTSSVVQDVDE 747

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + + E +  HSERLA+AF LIS P+G  I +MKNLR CRDCH   KLIS IV+R+  VRD
Sbjct: 748 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRD 807

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF  G CSCGD+W
Sbjct: 808 TSRFHHFSEGVCSCGDYW 825



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 12/434 (2%)

Query: 7   RNLIFTLAASSLTRQNKRSSCHTKAH--FIQQLQECKHLI---SLASVHSEILKSGFLSN 61
           RN  F  A     +  + SSC    H  F   L  C   +   ++  VH+  +K GF +N
Sbjct: 122 RNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTN 181

Query: 62  TFTL--NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            F    N L+  Y  +++  +A  LF+E+ E + V++ +L+ GY   G    ++ LF KM
Sbjct: 182 PFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKM 241

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             +   P++FTF+ V+KA   L D   G+Q+H    T GF  +  V + ++D Y K + V
Sbjct: 242 RQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV 301

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
              R +FD M   + VS+  +I +++Q  Q   +L  FRE      DR N    A++++ 
Sbjct: 302 LETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSI 360

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            A+L  L  G+  H   + +  +    V ++LVDMYAKC     ++ +F  +   + V++
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSW 420

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           T++I G  + GL    L LF +M    ++ +  TF  VL A +    +  G Q L +   
Sbjct: 421 TALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQ-LHAFII 479

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           + G + +    + +VDM  + G + +A ++ + +   PD   + W  L+SA   +G  + 
Sbjct: 480 RSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEM---PDRNAVSWNALISAHADNGDGEA 536

Query: 420 AVEASNQLIESNQQ 433
           A+ A  ++IES  Q
Sbjct: 537 AIGAFAKMIESGLQ 550



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 158/363 (43%), Gaps = 14/363 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT + N +I+ +V+      AR LFD M +  VV++T LM  Y        A  LF++M 
Sbjct: 78  NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 121 --GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN--LVVCSSLVDMYGKC 176
              +   P+  TF T++  C+         Q+H      GF  N  L V + L+  Y + 
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV 197

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             +D A  +F+ +  ++ V++ ++I  + ++    E++ +F +   QS  +P+    + V
Sbjct: 198 RRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMR-QSGHQPSDFTFSGV 256

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           + A   L     G+  H + V +G   +  V + ++D Y+K   V  +  +F+ +     
Sbjct: 257 LKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDF 316

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLD 355
           V+Y  +I   ++      SL  F EM   G    +  F  +L   ++   +  G Q H  
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA---SR 412
           ++      I    +   +VDM  +    +EA  + KS+   P    + W  L+S      
Sbjct: 377 ALLATADSILHVGN--SLVDMYAKCEMFEEAELIFKSL---PQRTTVSWTALISGYVQKG 431

Query: 413 LHG 415
           LHG
Sbjct: 432 LHG 434



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 34/219 (15%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           N R+   T A  ++       L+    +H+ I++SG L N F+ + L++ Y +    + A
Sbjct: 447 NLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDA 506

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
            Q+F+EM + N VS+ +L++ + + G  + A+  F KM+ + + P+  +   V+ ACS  
Sbjct: 507 VQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHC 566

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
             +  G +         FQ       ++  +YG          + DL+G           
Sbjct: 567 GFVEQGTEY--------FQ-------AMSPIYGITPKKKHYACMLDLLG----------- 600

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
               +N +  EA ++  E  ++    P++ M +SV+NAC
Sbjct: 601 ----RNGRFAEAEKLMDEMPFE----PDEIMWSSVLNAC 631


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 332/576 (57%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L+       +H +I+K GF S+ F  N L+  Y +     VA+ +FD + 
Sbjct: 157 FPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLY 216

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              +VS+TS+++GY   G+   AL +F +M  N V P+     ++++A + + DL  G+ 
Sbjct: 217 HRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRS 276

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  +   G +    +  SL   Y KC  V  A+  FD M   NV+ W ++I  +A+N  
Sbjct: 277 IHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGH 336

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+ +F  +      +P+   + S + A A +G L   +     V +S    +  V +
Sbjct: 337 AEEAVNLF-HYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNT 395

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+DMYAKCGSV ++ +VF+R S+  VV +++MI+G   +G G  +++L++ M   G+ P
Sbjct: 396 SLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFP 455

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           NDVTF+G+L AC+HSGLV EG +    M + + I+P  +HY+CVVD+LGR G L EA   
Sbjct: 456 NDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAF 514

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
              I ++P  G  +WG LLSA +++  V +   A+N+L   +      YV LSN YA + 
Sbjct: 515 IMKIPIEP--GVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSC 572

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W+ V  +R  M+  G++K+ G S +EI  +  AF+ G+       E+   L+ LER++K
Sbjct: 573 LWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLK 632

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E G+V   T  V  D+  E +EE +  HSER+A+A+GLIS   G T+RI KNLR C +CH
Sbjct: 633 EVGFVP-YTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCH 691

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              KLIS +VER+ +VRD NRFHHF++G CSCGD+W
Sbjct: 692 SAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 218/459 (47%), Gaps = 10/459 (2%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFT 64
             + L F+ A       N     ++ + +   +    H   L  +H+ ++ SG   N F 
Sbjct: 31  FVKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFL 90

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124
           +  L+N    L +   AR+LFDE   P+V  + +++  Y      +  + +++ M    V
Sbjct: 91  MTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGV 150

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            P+ FTF  V+KAC+ L D      IH  I  +GF  ++ V + LV +Y KC  +  A+ 
Sbjct: 151 HPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKV 210

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD +  R +VSWTSII  +AQN +  EAL MF +    +  +P+   L S++ A   + 
Sbjct: 211 VFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMR-NNGVKPDWIALVSILRAYTDVD 269

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G+  HG V++ G E    +  +L   YAKCG V  +   F+++   +V+ + +MI 
Sbjct: 270 DLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMIS 329

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G AK G    +++LF+ MISR IKP+ VT    + A +  G + E  Q +D    K    
Sbjct: 330 GYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSL-ELAQWMDDYVSKSNYG 388

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            D    T ++DM  + G ++ A ++      + D   ++W  ++    LHG+   A+   
Sbjct: 389 SDIFVNTSLIDMYAKCGSVEFARRV---FDRNSDKDVVMWSAMIMGYGLHGQGWEAINLY 445

Query: 425 NQLIES----NQQVANAYVTLSNTYALAGE-WENVHSLR 458
           + + ++    N       +T  N   L  E WE  H ++
Sbjct: 446 HVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMK 484


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 327/557 (58%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K GF  +   +  L++ Y    +   A ++F+E+ E +VV++T+L +GY   G+
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGK 192

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ LF+KM+   V P+ +    V+ AC  + DL +G+ I  H+E    Q N  V ++
Sbjct: 193 HREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTT 252

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV++Y KC  ++ AR VFD MG +++V+W+++I  +A N+   E +E F +   Q   +P
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQM-LQENLKP 311

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q  +   +++CASLG L  G+    ++ R     N  +A+AL+DMYAKCG++    +VF
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    +V   + I G AK G  + S  +F +    GI P+  TF+G+L  C H+GL+ 
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G++  +++   Y +    +HY C+VD+ GR G LD+AY+L   + + P+   ++WG LL
Sbjct: 432 DGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA--IVWGALL 489

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           S  RL     +A     +LI      A  YV LSN Y+++G W+    +R  M R G+ K
Sbjct: 490 SGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKK 549

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SW+E+    + F A +       ++ + L +L  +M+  G+V   T  VF DVEDE
Sbjct: 550 IPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP-TTEFVFFDVEDE 608

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++G HSE+LA+AFGLIS   G  IR++KNLR+C DCH+V KLIS I  R+ VVRD 
Sbjct: 609 EKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F NGSCSC D+W
Sbjct: 669 NRFHCFTNGSCSCNDYW 685



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 190/366 (51%), Gaps = 9/366 (2%)

Query: 36  QLQECKHLISLAS-------VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           ++Q+ K LIS+AS       VH  ++      +TF +N L+   +  ++T  +  LF   
Sbjct: 12  KVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHT 71

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
             PN+  Y +L+ G++N       L LF  +  + +  + FTF  V+KAC+  ++   G 
Sbjct: 72  QFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGI 131

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H+ +   GF +++   +SL+ +Y     ++ A +VF+ +  R+VV+WT++   +    
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAG 191

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +  EA+++F++   +   RP+ + +  V++AC  +G L SG+     +     + N  V 
Sbjct: 192 KHREAIDLFKKM-VEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVR 250

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + LV++YAKCG +  +  VF+ +    +VT+++MI G A     +  ++ F +M+   +K
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLK 310

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+  + VG L +C+  G +D G   + S+  ++  + +      ++DM  + G +   ++
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCGAMARGFE 369

Query: 389 LAKSIQ 394
           + K ++
Sbjct: 370 VFKEMK 375



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 147/333 (44%), Gaps = 38/333 (11%)

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           N+  + ++I     N   HE L++F        +  +      V+ AC        G   
Sbjct: 75  NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNL-HGFTFPLVLKACTRASNRKLGIDL 133

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H +VV+ G   +    ++L+ +Y+  G +N + KVF  I   SVVT+T++  G    G  
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKH 193

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG---IQHLDSMYRKYGIIPDAKH 369
           R ++DLF +M+  G++P+    V VL AC H G +D G   ++H++ M  +     ++  
Sbjct: 194 REAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQ----KNSFV 249

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
            T +V++  + G++++A  +  S+    +   + W T++     +      +E   Q+++
Sbjct: 250 RTTLVNLYAKCGKMEKARSVFDSM---GEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQ 306

Query: 430 SNQQVANAYVT--LSNTYALA----GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYA 483
            N +     +   LS+  +L     GEW                   G S ++  +    
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEW-------------------GISLIDRHEFLTN 347

Query: 484 FYAGNALFERGSEVLSLLRELE--RKMKERGYV 514
            +  NAL +  ++  ++ R  E  ++MKE+  V
Sbjct: 348 LFMANALIDMYAKCGAMARGFEVFKEMKEKDIV 380


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 336/589 (57%), Gaps = 37/589 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK G   N F    L+  Y+   +   AR +FD   + +V+++  +++ Y  +G+
Sbjct: 161 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 220

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  LF  M    V P   T   V+ ACS L DL TGK++H++++    + NLV+ ++
Sbjct: 221 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 280

Query: 169 LVDMYGKCNDVDGA-------------------------------RRVFDLMGCRNVVSW 197
           ++DMY  C ++D A                               R  FD M  ++ VSW
Sbjct: 281 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 340

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVV 256
           T++I  + ++ +  EALE+FR  N Q+ + +P++  + SV+ ACA LG L  G+     +
Sbjct: 341 TAMIDGYIRSNRFKEALELFR--NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 398

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            R+  + +  V +AL+DMY KCG V+ ++ +F  +S     T+T+MIVG A  G G  +L
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           D+F+ M+   I P+++T++GVL AC+H+GLVD+G ++   M  ++GI P+  HY C+VD+
Sbjct: 459 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           L R GRL EAY++ +++ +  +   ++WG LL+  R++   D+A     Q++E       
Sbjct: 519 LARAGRLKEAYEVIENMPIKANS--IVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            YV L N YA    W ++  LR  M   GI K PGCS +E+  + + F AG+    +   
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKN 636

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + + L ++ + +K  GY       VF+D+ +E +E  V  HSE+LA+AFGLI+ P G+TI
Sbjct: 637 IDAKLDKMTQDLKLAGY-SPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTI 695

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI KNLRMC DCH++ KL+S +  R+ +VRD  RFHHF++G CSC D+W
Sbjct: 696 RITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 219/453 (48%), Gaps = 41/453 (9%)

Query: 12  TLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN- 70
           T+AA+S   ++     H     I  L+ C+ +  L  VH + +K G  +N    N ++  
Sbjct: 24  TIAATSSALKSFSPPTHP---LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTF 80

Query: 71  -CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
            C       Q AR+LFDE+ EPN+  + +++ GY  +  PQ+ + L+ +ML   V P+ +
Sbjct: 81  CCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRY 140

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF  + K  +    L  G+Q+H H+   G QYN+ V ++LV MY  C  +D AR VFD+ 
Sbjct: 141 TFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 200

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              +V++W  II A+ +  +  E+  +F       +  P    L  V++AC+ L  L +G
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVME-DKQVLPTTVTLVLVLSACSKLKDLRTG 259

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  V     E N V+ +A++DMYA CG ++ +  +F  ++N  ++++T+++ G    
Sbjct: 260 KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNL 319

Query: 310 G-----------------------------LGRF--SLDLFNEMISRGIKPNDVTFVGVL 338
           G                               RF  +L+LF  M +  +KP++ T V VL
Sbjct: 320 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 379

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC+H G ++ G + + +   +  I  D      ++DM  + G +D+A  + + +     
Sbjct: 380 TACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS---Q 435

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
                W  ++    ++G  + A++  + +++++
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS 468



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 150/349 (42%), Gaps = 19/349 (5%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM-----YGKCNDVD 180
           P      ++++ C  +  L   +Q+H      G   N V+ + ++       YG   D  
Sbjct: 37  PPTHPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYG---DFQ 90

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            ARR+FD +   N+  W ++I  +++       + ++ E   +   +P+++    +    
Sbjct: 91  YARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEM-LRRGVKPDRYTFPFLFKGF 149

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
                L  G+  HG V++ G ++N  V +ALV MY  CG ++ +  VF+      V+T+ 
Sbjct: 150 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWN 209

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            +I    K G    S  LF  M  + + P  VT V VL ACS    +  G + + S  + 
Sbjct: 210 MIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKN 268

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             +  +      ++DM    G +D A  + +S+    +   + W T++S     G +D+A
Sbjct: 269 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMN---NRDIISWTTIVSGFTNLGEIDVA 325

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
               +++ E +     ++  + + Y  +  ++    L   M+ T +  +
Sbjct: 326 RNYFDKMPEKDYV---SWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 371



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 34  IQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           +  L  C HL +L     + + I ++   ++ F  N LI+ Y +      A  +F EM +
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            +  ++T+++ G    G  + AL +F  ML   + P+E T+  V+ AC+    +  G++ 
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495

Query: 151 HTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
              + +  G + N+     LVD+  +   +  A  V + M  + N + W +++
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALL 548


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 336/589 (57%), Gaps = 37/589 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK G   N F    L+  Y+   +   AR +FD   + +V+++  +++ Y  +G+
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  LF  M    V P   T   V+ ACS L DL TGK++H++++    + NLV+ ++
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 259

Query: 169 LVDMYGKCNDVDGA-------------------------------RRVFDLMGCRNVVSW 197
           ++DMY  C ++D A                               R  FD M  ++ VSW
Sbjct: 260 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 319

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVV 256
           T++I  + ++ +  EALE+FR  N Q+ + +P++  + SV+ ACA LG L  G+     +
Sbjct: 320 TAMIDGYIRSNRFKEALELFR--NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 377

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            R+  + +  V +AL+DMY KCG V+ ++ +F  +S     T+T+MIVG A  G G  +L
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           D+F+ M+   I P+++T++GVL AC+H+GLVD+G ++   M  ++GI P+  HY C+VD+
Sbjct: 438 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           L R GRL EAY++ +++ +  +   ++WG LL+  R++   D+A     Q++E       
Sbjct: 498 LARAGRLKEAYEVIENMPIKANS--IVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            YV L N YA    W ++  LR  M   GI K PGCS +E+  + + F AG+    +   
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKN 615

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + + L ++ + +K  GY       VF+D+ +E +E  V  HSE+LA+AFGLI+ P G+TI
Sbjct: 616 IDAKLDKMTQDLKLAGY-SPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTI 674

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI KNLRMC DCH++ KL+S +  R+ +VRD  RFHHF++G CSC D+W
Sbjct: 675 RITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 219/453 (48%), Gaps = 41/453 (9%)

Query: 12  TLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN- 70
           T+AA+S   ++     H     I  L+ C+ +  L  VH + +K G  +N    N ++  
Sbjct: 3   TIAATSSALKSFSPPTHP---LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTF 59

Query: 71  -CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
            C       Q AR+LFDE+ EPN+  + +++ GY  +  PQ+ + L+ +ML   V P+ +
Sbjct: 60  CCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRY 119

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF  + K  +    L  G+Q+H H+   G QYN+ V ++LV MY  C  +D AR VFD+ 
Sbjct: 120 TFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 179

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              +V++W  II A+ +  +  E+  +F       +  P    L  V++AC+ L  L +G
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVME-DKQVLPTTVTLVLVLSACSKLKDLRTG 238

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           K  H  V     E N V+ +A++DMYA CG ++ +  +F  ++N  ++++T+++ G    
Sbjct: 239 KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNL 298

Query: 310 G-----------------------------LGRF--SLDLFNEMISRGIKPNDVTFVGVL 338
           G                               RF  +L+LF  M +  +KP++ T V VL
Sbjct: 299 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 358

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC+H G ++ G + + +   +  I  D      ++DM  + G +D+A  + + +     
Sbjct: 359 TACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS---Q 414

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
                W  ++    ++G  + A++  + +++++
Sbjct: 415 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS 447



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 150/349 (42%), Gaps = 19/349 (5%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM-----YGKCNDVD 180
           P      ++++ C  +  L   +Q+H      G   N V+ + ++       YG   D  
Sbjct: 16  PPTHPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYG---DFQ 69

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            ARR+FD +   N+  W ++I  +++       + ++ E   +   +P+++    +    
Sbjct: 70  YARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEM-LRRGVKPDRYTFPFLFKGF 128

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
                L  G+  HG V++ G ++N  V +ALV MY  CG ++ +  VF+      V+T+ 
Sbjct: 129 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWN 188

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            +I    K G    S  LF  M  + + P  VT V VL ACS    +  G + + S  + 
Sbjct: 189 MIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKN 247

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             +  +      ++DM    G +D A  + +S+    +   + W T++S     G +D+A
Sbjct: 248 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMN---NRDIISWTTIVSGFTNLGEIDVA 304

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
               +++ E +     ++  + + Y  +  ++    L   M+ T +  +
Sbjct: 305 RNYFDKMPEKDYV---SWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 350



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 34  IQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           +  L  C HL +L     + + I ++   ++ F  N LI+ Y +      A  +F EM +
Sbjct: 355 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 414

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            +  ++T+++ G    G  + AL +F  ML   + P+E T+  V+ AC+    +  G++ 
Sbjct: 415 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 474

Query: 151 HTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
              + +  G + N+     LVD+  +   +  A  V + M  + N + W +++
Sbjct: 475 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALL 527


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 329/558 (58%), Gaps = 27/558 (4%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + +T   N +++ Y++  K   A +LF +M   NV+S+T+++ G     +   AL LF+ 
Sbjct: 156 VKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKN 215

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML   +      F  VI AC+       G Q+H  I   GF Y   V +SL+  Y  C  
Sbjct: 216 MLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKR 275

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  +R+VFD      V  WT+++  ++ N +  +AL +F     ++   PNQ   AS +N
Sbjct: 276 IGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGM-LRNSILPNQSTFASGLN 334

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           +C++LG L  GK  HGV V+ G E +  V ++LV MY+  G+VN +  VF +I   S+V+
Sbjct: 335 SCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVS 394

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG-------- 350
           + S+IVG A++G G+++  +F +MI    +P+++TF G+L ACSH G +++G        
Sbjct: 395 WNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMS 454

Query: 351 --IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
             I H+D   RK       +HYTC+VD+LGR G+L EA +L + + V P+   ++W  LL
Sbjct: 455 SGINHID---RK------IQHYTCMVDILGRCGKLKEAEELIERMVVKPN--EMVWLALL 503

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA R+H  VD   +A+  +   + + + AYV LSN YA AG W NV  LR +MK+ GI K
Sbjct: 504 SACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMK 563

Query: 469 EPGCSWVEIRDQTYAFYAGNALF-ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           +PG SWV IR + + F++G+     R  E L  LRE   K+KE GY       +  DVED
Sbjct: 564 KPGSSWVVIRGKKHEFFSGDQPHCSRIYEKLEFLRE---KLKELGYAPDYRSALH-DVED 619

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +EE++  HSERLA+AFGLI+  +G  + +MKNLR+C DCH V KLIS +V R+ V+RD
Sbjct: 620 EQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRD 679

Query: 588 VNRFHHFRNGSCSCGDFW 605
             RFHHF+NG+CSCGD+W
Sbjct: 680 PIRFHHFKNGTCSCGDYW 697



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 173/369 (46%), Gaps = 19/369 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +I  Y R  +   A  LFDEM   +VVS+ S+++G +  G    A+ LF +M    V   
Sbjct: 72  MITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSV--- 128

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
             ++  ++  C     +   +++   +       +    +S+V  Y +   VD A ++F 
Sbjct: 129 -VSWTAMVNGCFRSGKVDQAERLFYQMPV----KDTAAWNSMVHGYLQFGKVDDALKLFK 183

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF---NYQSRDRPNQHMLASVINACASLG 244
            M  +NV+SWT++I    QN +  EAL++F+       +S  RP       VI ACA+  
Sbjct: 184 QMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRP----FTCVITACANAP 239

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
               G   HG++++ G  + + V+++L+  YA C  +  S KVF+   +  V  +T+++ 
Sbjct: 240 AFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLS 299

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G +       +L +F+ M+   I PN  TF   L++CS  G +D G + +  +  K G+ 
Sbjct: 300 GYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG-KEMHGVAVKLGLE 358

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            DA     +V M   +G +++A  +   I        + W +++     HGR   A    
Sbjct: 359 TDAFVGNSLVVMYSDSGNVNDAVSVFIKIF---KKSIVSWNSIIVGCAQHGRGKWAFVIF 415

Query: 425 NQLIESNQQ 433
            Q+I  N++
Sbjct: 416 GQMIRLNKE 424



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 47/347 (13%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I+K GFL   +    LI  Y   K+   +R++FDE +   V  +T+L++GY    +
Sbjct: 247 VHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKK 306

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F  ML N + PN+ TFA+ + +CS L  L  GK++H      G + +  V +S
Sbjct: 307 HEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNS 366

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY    +V+ A  VF  +  +++VSW SIIV  AQ+ +G  A  +F +    +++ P
Sbjct: 367 LVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKE-P 425

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++     +++AC+  G L  G+                        Y     +N+ D+  
Sbjct: 426 DEITFTGLLSACSHCGFLEKGRKL---------------------FYYMSSGINHIDR-- 462

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                  +  YT M+    + G  + + +L   M+   +KPN++ ++ +L AC     VD
Sbjct: 463 ------KIQHYTCMVDILGRCGKLKEAEELIERMV---VKPNEMVWLALLSACRMHSDVD 513

Query: 349 EG------IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            G      I +LDS          +  Y  + ++    GR     KL
Sbjct: 514 RGEKAAAAIFNLDS--------KSSAAYVLLSNIYASAGRWSNVSKL 552


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 326/603 (54%), Gaps = 37/603 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPNV 93
           LQ C     L  +H+ +LK+G + +++ +   ++  +    +     A+ +FD    P+ 
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
             +  ++ G+    +P+ +LLL+Q+ML +    N +TF +++KACS L+      QIH  
Sbjct: 81  FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140

Query: 154 IETFGFQYNLVVCSSLVDMYG-------------------------------KCNDVDGA 182
           I   G++ ++   +SL++ Y                                K   +D A
Sbjct: 141 ITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIA 200

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
             +F  M  +N +SWT++I  + Q     EAL++F E    S   P+   LA+ ++ACA 
Sbjct: 201 LTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ-NSDVEPDNVSLANALSACAQ 259

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           LG L  GK  H  + ++    + V+   L+DMYAKCG +  + +VF  I   SV  +T++
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G A +G GR ++  F EM   GIKPN +TF  VL ACS++GLV+EG     SM R Y 
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           + P  +HY C+VD+LGR G LDEA +  + + + P+   ++WG LL A R+H  +++  E
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNA--VIWGALLKACRIHKNIELGEE 437

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
               LI  +      YV  +N +A+  +W+     R  MK  G+ K PGCS + +   T+
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F AG+       ++ S  R + RK++E GYV     ++   V+D+ RE IV  HSE+LA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           + +GLI    G  IRIMKNLR+C+DCH V KLIS I +RD V+RD  RFHHFR+G CSCG
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCG 617

Query: 603 DFW 605
           D+W
Sbjct: 618 DYW 620



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 35/261 (13%)

Query: 25  SSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           S+ H    F   L+ C +L +      +H++I K G+ ++ + +N LIN Y      ++A
Sbjct: 110 SAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLA 169

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN--LVW-------------- 125
             LFD + EP+ VS+ S++ GY+  G+  IAL LF+KM     + W              
Sbjct: 170 HLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNK 229

Query: 126 ---------------PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
                          P+  + A  + AC+ L  L  GK IH+++     + + V+   L+
Sbjct: 230 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLI 289

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           DMY KC +++ A  VF  +  ++V +WT++I  +A +  G EA+  F E       +PN 
Sbjct: 290 DMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGI-KPNV 348

Query: 231 HMLASVINACASLGRLVSGKV 251
               +V+ AC+  G +  GK+
Sbjct: 349 ITFTAVLTACSYTGLVEEGKL 369


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 326/588 (55%), Gaps = 33/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ F LN LIN Y       +A ++F  M   +VVS+ +++  +   G 
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGL 254

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  ALLLFQ+M    V PN  T  +V+ AC+   DL  G+ I ++IE  GF  +L++ ++
Sbjct: 255 PDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNA 314

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA----------------------- 205
           ++DMY KC  ++ A+ +F+ M  +++VSWT+++  HA                       
Sbjct: 315 MLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAW 374

Query: 206 --------QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                   QN +   AL +F E       +P++  L   + A A LG +  G   H  + 
Sbjct: 375 NALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIK 434

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           +     N  +A++L+DMYAKCG++N + +VF+ +    V  +++MI   A YG G+ +LD
Sbjct: 435 KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALD 494

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF+ M+   IKPN VTF  +L AC+H+GLV+EG Q  + M   YGI+P  +HY CVVD+ 
Sbjct: 495 LFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIF 554

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G L++A    + + + P     +WG LL A   HG V++A  A   L+E       A
Sbjct: 555 GRAGLLEKAASFIEKMPIPPTAA--VWGALLGACSRHGNVELAELAYQNLLELEPCNHGA 612

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           +V LSN YA AG+WE V +LR  M+ + + KEP CS +++    + F  G+       ++
Sbjct: 613 FVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKI 672

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            S L E+  K K  GY    + L+ +  ED   E+ + +HSE+LA+AFGLIS      IR
Sbjct: 673 YSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIR 732

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KN+R+C DCH   KL+S + +RD ++RD  RFHHFR G CSC D+W
Sbjct: 733 IVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 220/435 (50%), Gaps = 42/435 (9%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEML 89
           + ++ + +C + + L  +H+ +L++    + +T + L+  Y     + +  A+ +F+++ 
Sbjct: 74  NILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIP 133

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPNEFTFATVIKACSMLADLITGK 148
           +PN+  + +L+ GY +   P  + L+F  ML +   +PN+FTF  + KA S L  L  G 
Sbjct: 134 QPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGS 193

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H  +       +L + +SL++ YG     D A RVF  M  ++VVSW ++I A A   
Sbjct: 194 VLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGG 253

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              +AL +F+E   +   +PN   + SV++ACA    L  G+     +  +G   + ++ 
Sbjct: 254 LPDKALLLFQEMEMKDV-KPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILN 312

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY------------------- 309
           +A++DMY KCG +N +  +FN++S   +V++T+M+ G AK                    
Sbjct: 313 NAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTA 372

Query: 310 ------------GLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
                       G  R +L LF+EM +S+  KP++VT +  L A +  G +D G  H   
Sbjct: 373 AWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFG--HWIH 430

Query: 357 MY-RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +Y +K+ I  +    T ++DM  + G L++A ++  +++        +W  ++ A  ++G
Sbjct: 431 VYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE---RKDVYVWSAMIGALAMYG 487

Query: 416 RVDIAVEASNQLIES 430
           +   A++  + ++E+
Sbjct: 488 QGKAALDLFSSMLEA 502



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 35/327 (10%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG--KCNDVDGARR 184
           NE     +++      + +  KQIH H+       +    S L+  Y    C+ +  A+ 
Sbjct: 68  NEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKN 127

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VF+ +   N+  W ++I  +A ++   ++  +F    +   + PN+     +  A + L 
Sbjct: 128 VFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLK 187

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G V HG+V+++    +  + ++L++ Y   G+ + + +VF  +    VV++ +MI 
Sbjct: 188 VLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMIN 247

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG------------IQ 352
             A  GL   +L LF EM  + +KPN +T V VL AC+    ++ G             +
Sbjct: 248 AFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTE 307

Query: 353 HLD------SMYRKYGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           HL        MY K G I DAK             +T ++D   + G  DEA+ +  ++ 
Sbjct: 308 HLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAM- 366

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAV 421
             P      W  L+SA   +G+  +A+
Sbjct: 367 --PHKWTAAWNALISAYEQNGKPRVAL 391


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 330/573 (57%), Gaps = 8/573 (1%)

Query: 37   LQECKHLIS----LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            L+ C  LI        +H   LK+G ++++F    LI+ Y +  K + A  LF    + +
Sbjct: 1012 LRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLD 1071

Query: 93   VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            +  + ++M GYI     + AL LF  +  +    ++ T AT  KAC  L  L  GKQIH 
Sbjct: 1072 LACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHA 1131

Query: 153  HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            H    GF  +L V S ++DMY KC D+  A  VF+ +   + V+WTS+I     N    +
Sbjct: 1132 HAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQ 1191

Query: 213  ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
            AL ++     QSR  P+++  A++I A + +  L  G+  H  V++  C  +  V ++LV
Sbjct: 1192 ALRIYHRMR-QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 1250

Query: 273  DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            DMYAKCG++  + ++F +++  ++  + +M+VG A++G    +++LF  M S GI+P+ V
Sbjct: 1251 DMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRV 1310

Query: 333  TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
            +F+G+L ACSH+GL  E  ++L SM   YGI P+ +HY+C+VD LGR G + EA K+ ++
Sbjct: 1311 SFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIET 1370

Query: 393  IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
            +         +   LL A R+ G V+     + +L       + AYV LSN YA A  W+
Sbjct: 1371 MPFKASAS--INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWD 1428

Query: 453  NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            +V   R  MKR  + K+PG SW+++++  + F   +    +   +   + E+ + ++E G
Sbjct: 1429 DVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDG 1488

Query: 513  YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
            YV   T  V +DVEDE +E  +  HSE+LA+A+GLIS P   TIR++KNLR+C DCH+  
Sbjct: 1489 YV-PDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAI 1547

Query: 573  KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            K IS + ER+ V+RD NRFHHFR+G CSCGD+W
Sbjct: 1548 KYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 191/374 (51%), Gaps = 6/374 (1%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            VH   +KSG  S+    N L+N Y ++     AR++F++M   +++S+ S+++       
Sbjct: 926  VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 985

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-LITGKQIHTHIETFGFQYNLVVCS 167
             + ++ LF  +L   + P+ FT A+V++ACS L D L   +QIH H    G   +  V +
Sbjct: 986  EEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVAT 1045

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
            +L+D+Y K   ++ A  +F      ++  W +++  +     G +ALE+F    ++S ++
Sbjct: 1046 TLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELF-SLIHKSGEK 1104

Query: 228  PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             +Q  LA+   AC  L  L  GK  H   +++G + +  V S ++DMY KCG +  +  V
Sbjct: 1105 SDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIV 1164

Query: 288  FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
            FN IS P  V +TSMI G    G    +L +++ M    + P++ TF  ++ A S    +
Sbjct: 1165 FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 1224

Query: 348  DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            ++G Q L +   K   + D    T +VDM  + G +++AY+L K + V       LW  +
Sbjct: 1225 EQGRQ-LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR---NIALWNAM 1280

Query: 408  LSASRLHGRVDIAV 421
            L     HG  + AV
Sbjct: 1281 LVGLAQHGNAEEAV 1294



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 30/346 (8%)

Query: 43   LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
            L +   VH   +K G   + F    L+N Y +  + + AR LFD M E +VV +  ++ G
Sbjct: 743  LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 802

Query: 103  YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            Y+ +G  + A  LF +   + + P+EF+   ++   S + +   GK +   ++ +  + +
Sbjct: 803  YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-NWDEGKWLADQVQAYAAKLS 861

Query: 163  LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            L                D    VF    C     W   +           A+E F   N 
Sbjct: 862  L---------------SDDNPDVF----C-----WNKKLSECLWAGDNWGAIECFVNMNG 897

Query: 223  QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
             + D     +L  V+ A A    L  GK  HG+ V+SG + +  VA++LV+MY+K G   
Sbjct: 898  LNIDYDAVTLLV-VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 956

Query: 283  YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++ +VFN + +  ++++ SMI   A+  L   S++LF +++  G+KP+  T   VL ACS
Sbjct: 957  FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016

Query: 343  H--SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
                GL      H+ ++  K G I D+   T ++D+  ++G+++EA
Sbjct: 1017 SLIDGLNISRQIHVHAL--KTGNIADSFVATTLIDVYSKSGKMEEA 1060



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 187/393 (47%), Gaps = 20/393 (5%)

Query: 51   SEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML-----------EPNVVSYTSL 99
            SE  +SG   + F++  ++N    +   +  + L D++             P+V  +   
Sbjct: 817  SEFHRSGLRPDEFSVQLILNGVSEVNWDE-GKWLADQVQAYAAKLSLSDDNPDVFCWNKK 875

Query: 100  MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
            ++  +  G    A+  F  M G  +  +  T   V+ A +   DL  GKQ+H      G 
Sbjct: 876  LSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGL 935

Query: 160  QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
              ++ V +SLV+MY K      AR VF+ M   +++SW S+I + AQ++   E++ +F +
Sbjct: 936  DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFID 995

Query: 220  FNYQSRDRPNQHMLASVINACASL--GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
              ++   +P+   LASV+ AC+SL  G  +S ++ H   +++G   +  VA+ L+D+Y+K
Sbjct: 996  LLHEGL-KPDHFTLASVLRACSSLIDGLNISRQI-HVHALKTGNIADSFVATTLIDVYSK 1053

Query: 278  CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
             G +  ++ +F    +  +  + +M+ G      G+ +L+LF+ +   G K + +T    
Sbjct: 1054 SGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATA 1113

Query: 338  LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
              AC    L+D+G Q + +   K G   D    + ++DM  + G +  A  +   I    
Sbjct: 1114 AKACGCLVLLDQGKQ-IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 1172

Query: 398  DGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            D   + W +++S    +G  D A+   +++ +S
Sbjct: 1173 D---VAWTSMISGCVDNGNEDQALRIYHRMRQS 1202



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 7/213 (3%)

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           +L+ GK  H  I   G   +  + ++L+ MY KC  +  AR+VFD    R++V+W +I+ 
Sbjct: 636 NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 203 AHA-----QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           A+A      +    E L +FR     S     +  LA V+  C + G L + +  HG  +
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLR-ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI 754

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           + G E++  V+ ALV++Y+KCG +  +  +F+ +    VV +  M+ G  + GL + +  
Sbjct: 755 KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQ 814

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           LF+E    G++P++ +   +L+  S     DEG
Sbjct: 815 LFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEG 846



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 6/200 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI---- 104
            H+ I+ SG   + F  N+L+  Y +      ARQ+FD   E ++V++ +++  Y     
Sbjct: 643 THARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 702

Query: 105 -NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
            N G  Q  L LF+ +  +L      T A V+K C     L   + +H +    G ++++
Sbjct: 703 SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDV 762

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +LV++Y KC  +  AR +FD M  R+VV W  ++  + Q     EA ++F EF ++
Sbjct: 763 FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF-HR 821

Query: 224 SRDRPNQHMLASVINACASL 243
           S  RP++  +  ++N  + +
Sbjct: 822 SGLRPDEFSVQLILNGVSEV 841



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L+ GK  H  +V SG   +  +++ L+ MY+KCGS++ + +VF+      +VT+ + I+G
Sbjct: 637 LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA-ILG 695

Query: 306 A------AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV--DEGIQHLDSM 357
           A      +  G  +  L LF  + +       +T   VL  C +SG +   EG+      
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVH---GY 752

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
             K G+  D      +V++  + GR+ +A
Sbjct: 753 AIKIGLEWDVFVSGALVNIYSKCGRMRDA 781


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 331/557 (59%), Gaps = 7/557 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   +K+ F       N L++ Y +      A ++F +M +  +VS+TS++A Y+  G
Sbjct: 317 ALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREG 376

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A+ LF +M    V P+ +T  +++ AC+  + L  G+ +H+++   G   NL V +
Sbjct: 377 LYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN 436

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L++MY KC  V+ AR VF  +  +++VSW ++I  ++QN   +EALE+F   + Q + +
Sbjct: 437 ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELF--LDMQKQFK 494

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDK 286
           P+   +A V+ ACA L  L  G+  HG ++R G  F+D+ VA ALVDMYAKCG +  +  
Sbjct: 495 PDDITMACVLPACAGLAALDKGREIHGHILRRG-YFSDLHVACALVDMYAKCGLLVLAQL 553

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ I    ++++T MI G   +G G  ++  FNEM   GI+P++ +F  +L+ACSHSGL
Sbjct: 554 LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGL 613

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           ++EG +  +SM  + G+ P  +HY CVVD+L R G L +AYK  +S+ + PD    +WG 
Sbjct: 614 LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD--TTIWGV 671

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LLS  R+H  V +A + +  + E        YV L+N YA A +WE V  LR  M++ G 
Sbjct: 672 LLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGF 731

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            + PGCSW+E+  +   F AGN+   +  ++  LL +L  +M+   Y       V ++ +
Sbjct: 732 KQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDY-SSMFRYVLINED 790

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D  +E I   HSE+ A+AFG++++P G T+R+ KN R+C DCH++ K +S   + + V+R
Sbjct: 791 DMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLR 850

Query: 587 DVNRFHHFRNGSCSCGD 603
           D NRFHHF++G CSC D
Sbjct: 851 DSNRFHHFKDGLCSCRD 867



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 201/402 (50%), Gaps = 9/402 (2%)

Query: 7   RNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLN 66
           RN I  L  S        S C      +Q   E K L     VHS I+ +G   +     
Sbjct: 78  RNAIELLTKSKSYELGLNSYCSV----LQLCAEKKSLEDGKRVHSVIISNGISVDEALGA 133

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L+  YV        R++FD+++   V  +  LM+ Y  +G  + ++ LF+KM    V  
Sbjct: 134 KLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG 193

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N +TF  V+K  + L  +   K++H ++   GF  N  V +SL+  Y K   V+ A  +F
Sbjct: 194 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 253

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D +   +VVSW S+I     N      LE+F +      +  +   L SV+ ACA++G L
Sbjct: 254 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE-VDLTTLVSVLVACANIGNL 312

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+  HG  V++      V ++ L+DMY+KCG++N + +VF ++ + ++V++TS+I   
Sbjct: 313 SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAY 372

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
            + GL   ++ LF+EM S+G++P+  T   ++HAC+ S  +D+G + + S   K G+  +
Sbjct: 373 VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG-RDVHSYVIKNGMGSN 431

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
                 +++M  + G ++EA  +   I   P    + W T++
Sbjct: 432 LPVTNALINMYAKCGSVEEARLVFSKI---PVKDIVSWNTMI 470


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 336/564 (59%), Gaps = 6/564 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           LI+   VH+  +K    S+    N L++ Y++    + + ++FD M   + VS+T+++A 
Sbjct: 381 LINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIAC 440

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y    +   A+  F+      +  +     ++++ACS L  +   KQ+H++    G   +
Sbjct: 441 YAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LD 499

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           L++ + ++D+YG+C +V  A  +F+++  +++V+WTS++   A+N   HEA+ +F +   
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKM-L 558

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            +  +P+   L  ++ A A L  L  GK  HG ++R        V S+LVDMY+ CGS+N
Sbjct: 559 NAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMN 618

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+ KVF+      VV +T+MI     +G G+ ++ +F  M+  G+ P+ V+F+ +L+ACS
Sbjct: 619 YALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           HS LVDEG  +LD M  KY + P  +HY CVVD+LGR+G+ +EAYK  KS+ ++P    +
Sbjct: 679 HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKS--V 736

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A R+H   ++A+ A+++L+E        YV +SN +A  G+W NV  +R++M 
Sbjct: 737 VWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMT 796

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL-LRELERKMKERGYVGGKTGLV 521
             G+ K+P CSW+EI +  + F A +    R S+ + L L E+  K++  G     T  V
Sbjct: 797 EQGLRKDPACSWIEIGNTVHTFTARDH-SHRDSQAIHLKLAEITEKLRREGQYVEDTSFV 855

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             DV +E + +++  HSERLA++FGLIS   G  +RI KNLR+C DCH+  KL+S + ER
Sbjct: 856 LHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFER 915

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + VVRD NRFHHF  G+CSCGDFW
Sbjct: 916 EIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 207/402 (51%), Gaps = 18/402 (4%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C  L  L     +H+ +LK G   N    N L+  Y R      A ++F E+ + + 
Sbjct: 272 LQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDY 330

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+ S+++ Y+       A+  F +M+ N   P+     +++ A   L  LI G+++H +
Sbjct: 331 ISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAY 390

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                   +L + ++L+DMY KC  V+ + RVFD M  ++ VSWT+II  +AQ+++  EA
Sbjct: 391 AVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEA 450

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +  FR    +   + +  M+ S++ AC+ L  +   K  H   +R+G   + ++ + ++D
Sbjct: 451 IGKFRTAQKEGI-KVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIID 508

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y +CG V Y+  +F  +    +VT+TSM+   A+ GL   ++ LF +M++ GI+P+ V 
Sbjct: 509 IYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVA 568

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKL--- 389
            VG+L A +    + +G +    + R  G  P +    + +VDM    G ++ A K+   
Sbjct: 569 LVGILGAIAGLSSLTKGKEIHGFLIR--GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDE 626

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           AK   V      +LW  +++A+ +HG    A+    +++E+ 
Sbjct: 627 AKCKDV------VLWTAMINATGMHGHGKQAIYIFKRMLETG 662



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 159/297 (53%), Gaps = 3/297 (1%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYIN 105
           + VH   +KSG   +T   N L+  Y +      A ++F+ M +  +V S+ S ++G + 
Sbjct: 183 SEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQ 242

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    AL LF++M  +    N +T   V++ C+ LA L  G+++H  +   G ++N + 
Sbjct: 243 NGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQ 301

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C++L+ MY +C  VD A RVF  +G ++ +SW S++  + QN    EA++ F E   Q+ 
Sbjct: 302 CNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEM-VQNG 360

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P+   + S+++A   LGRL++G+  H   V+   + +  +A+ L+DMY KC SV  S 
Sbjct: 361 FNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSA 420

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           +VF+R+     V++T++I   A+      ++  F      GIK + +    +L ACS
Sbjct: 421 RVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 185/403 (45%), Gaps = 45/403 (11%)

Query: 49  VHSEILKSGFLSNT---FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +H+  + +G L +    F    L+  Y +  +   A +LFD M    V S+ +L+   ++
Sbjct: 77  LHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLS 136

Query: 106 MGQPQIALLLFQKMLGNL----VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            G    A+ +++ M  +       P+  T A+V+KAC    D   G ++H      G   
Sbjct: 137 SGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDR 196

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
           + +V ++LV MY KC  +D A RVF+ M   R+V SW S I    QN    EAL++FR  
Sbjct: 197 STLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRM 256

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
                   N +    V+  CA L +L  G+  H  +++ G EFN +  +AL+ MYA+CG 
Sbjct: 257 QSDGFSM-NSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMYARCGW 314

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           V+ + +VF  I +   +++ SM+    +  L   ++D F EM+  G  P+    V +L A
Sbjct: 315 VDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 341 CSHSGLVDEG--------IQHLDS----------MYRK-YGI-----------IPDAKHY 370
             H G +  G         Q LDS          MY K Y +           I D   +
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSW 434

Query: 371 TCVVDMLGRTGRLDEA---YKLAKSIQVDPDGGPLLWGTLLSA 410
           T ++    ++ R  EA   ++ A+   +  D  P++ G++L A
Sbjct: 435 TTIIACYAQSSRYSEAIGKFRTAQKEGIKVD--PMMMGSILEA 475



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 12/270 (4%)

Query: 147 GKQIHTH---IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           G+Q+H H       G      + + L+ MYGKC  +  A R+FD M  R V SW ++I A
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 204 HAQNAQGHEALEMFREFNYQ---SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
              +    EA+ ++R        +   P+   LASV+ AC + G    G   HG+ V+SG
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLF 319
            + + +VA+ALV MYAKCG ++ + +VF  + +   V ++ S I G  + G+   +LDLF
Sbjct: 194 LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLF 253

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
             M S G   N  T VGVL  C+    ++ G + L +   K G   + +    +V M  R
Sbjct: 254 RRMQSDGFSMNSYTTVGVLQVCAELAQLNHG-RELHAALLKCGTEFNIQCNALLV-MYAR 311

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
            G +D A ++ + I    D   + W ++LS
Sbjct: 312 CGWVDSALRVFREIG---DKDYISWNSMLS 338


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 327/559 (58%), Gaps = 26/559 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VHS  +KS F       N L++ Y +      A ++F++M E NVVS+TS++AGY   G
Sbjct: 272 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A++L Q+M    V  +     +++ AC+    L  GK +H +I+      NL VC+
Sbjct: 332 WSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCN 391

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KC  ++GA  VF  M  ++++SW +++                         +
Sbjct: 392 ALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------------GELK 429

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+   +A ++ ACASL  L  GK  HG ++R+G   +  VA+ALVD+Y KCG +  +  +
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ I +  +V++T MI G   +G G  ++  FNEM   GI+P++V+F+ +L+ACSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +    M   + I P  +HY C+VD+L RTG L +AYK  +++ + PD    +WG L
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDA--TIWGAL 607

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L   R++  +++A + + ++ E   +    YV L+N YA A + E V  +R ++ + G+ 
Sbjct: 608 LCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLR 667

Query: 468 KEPGCSWVEIRDQTYAFYAGN-ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
           K PGCSW+EI+ +   F +GN +      ++ SLL+++ RKMKE GY   KT    ++ +
Sbjct: 668 KNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP-KTKYALINAD 726

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  +E  +  HSE+LA+AFGL+++P   TIR+ KNLR+C DCH++ K +S    R+ V+R
Sbjct: 727 EMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLR 786

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G CSC  FW
Sbjct: 787 DSNRFHHFKDGYCSCRGFW 805



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 179/352 (50%), Gaps = 26/352 (7%)

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
           K+ + A +LFD++ + +V+S+ S+++GY++ G  +  L ++++M+   +  +  T  +V+
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
             C+    L  GK +H+      F+  +   ++L+DMY KC D+DGA RVF+ MG RNVV
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWTS+I  + ++     A+ + ++   +   + +   + S+++ACA  G L +GK  H  
Sbjct: 319 SWTSMIAGYTRDGWSDGAIILLQQMEKEGV-KLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +  +    N  V +AL+DMYAKCGS+  ++ VF+ +    ++++ +M VG          
Sbjct: 378 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM-VGE--------- 427

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
                      +KP+  T   +L AC+    ++ G + +     + G   D      +VD
Sbjct: 428 -----------LKPDSRTMACILPACASLSALERG-KEIHGYILRNGYSSDRHVANALVD 475

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +  + G L  A  L   I   P    + W  +++   +HG  + A+   N++
Sbjct: 476 LYVKCGVLGLARLLFDMI---PSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 524



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 52/272 (19%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+ +V++ C+ L  L  GK++H+ I++     +  +   LV  Y  C D+   RRVFD M
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 190 GCRN---------------------------------------------------VVSWT 198
             +N                                                   V+SW 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I  +  N      L ++++  Y   D  +   + SV+  CA+ G L  GK  H + ++
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGID-VDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           S  E     ++ L+DMY+KCG ++ + +VF ++   +VV++TSMI G  + G    ++ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
             +M   G+K + V    +LHAC+ SG +D G
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNG 371


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 330/580 (56%), Gaps = 27/580 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+ +L + F    LI  Y +      A  +FDEM E NVVS+T++++ Y   G 
Sbjct: 265 VHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGY 324

Query: 109 PQIALLLF-----QKMLG------------NLVW----PNEFTFATVIKACSMLADLITG 147
              AL LF       + G            N  W    PNEFTFATV+ +C+     I G
Sbjct: 325 ASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILG 384

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +QIH+ I    ++ ++ V SSL+DMY K   +  AR VF+ +  R+VVS T+II  +AQ 
Sbjct: 385 RQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQL 444

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               EALE+FR    +   + N      V+ A + L  L  GK  H  V+RS      V+
Sbjct: 445 GLDEEALELFRRLQGEGM-KSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVL 503

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-G 326
            ++L+DMY+KCG++ YS ++F+ +   +V+++ +M+VG +K+G GR  L LF  M     
Sbjct: 504 QNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETK 563

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDE 385
           +KP+ VT + VL  CSH GL D+G+   + M   K  + P  +HY CVVD+LGR+GR++E
Sbjct: 564 VKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEE 623

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           A++  K +  +P     +WG+LL A R+H  VDI   A  QL+E     A  YV LSN Y
Sbjct: 624 AFEFIKKMPFEPTAA--IWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLY 681

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           A AG WE+V SLR  M +  + KEPG S +E+    + F+A +    R  E+   ++EL 
Sbjct: 682 ASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELS 741

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
              KE GYV      V  DV++E +E+I+  HSE+LAL+FGLI+ P  + IR++KNLR+C
Sbjct: 742 TSFKEVGYVP-DLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRIC 800

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH+  K IS +  R+  +RD NRFH    G CSC D+W
Sbjct: 801 VDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 36/342 (10%)

Query: 98  SLMAGYINMGQP--QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           S    +I++ QP  Q+AL  F     N        +  ++  C        G+++H H+ 
Sbjct: 219 STFTTHIHLQQPLLQMALHGFNMKFEN--------YNAILNECVNKRAFREGQRVHAHMI 270

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
              +  ++ + + L+ +Y KC+ +  A  VFD M  RNVVSWT++I A++Q     +AL 
Sbjct: 271 KTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALN 330

Query: 216 MF--------------REFNYQSRDR------PNQHMLASVINACASLGRLVSGKVAHGV 255
           +F               +    + +R      PN+   A+V+ +C S    + G+  H +
Sbjct: 331 LFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSL 390

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +++   E +  V S+L+DMYAK G ++ +  VF  +    VV+ T++I G A+ GL   +
Sbjct: 391 IIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEA 450

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVV 374
           L+LF  +   G+K N VT+ GVL A S    +D G Q  + + R    IP        ++
Sbjct: 451 LELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSE--IPSFVVLQNSLI 508

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           DM  + G L  + ++  ++    +   + W  +L     HG 
Sbjct: 509 DMYSKCGNLTYSRRIFDTMY---ERTVISWNAMLVGYSKHGE 547


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 332/557 (59%), Gaps = 7/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS   K+G  S+ + L   I+ Y +  K ++   LF E  +P++V+Y +++ GY + G+
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGE 302

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +++L LF++++   +       +T++    +   L+    IH +     F  +  V ++
Sbjct: 303 TELSLSLFKELM---LSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  +Y K N+++ AR++FD    +++ SW ++I  + QN    +A+ +FRE   +S   P
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-KSEFSP 418

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   +  +++ACA LG L  GK  H +V  +  E +  V++AL+ MYAKCGS+  + ++F
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++  + VT+ +MI G   +G G+ +L++F EM++ GI P  VTF+ VL+ACSH+GLV 
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +  +SM  +YG  P  KHY C+VD+LGR G L  A +  +++ ++P  G  +W TLL
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEP--GSSVWETLL 596

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R+H   ++A   S +L E +      +V LSN ++    +    ++R   K+  + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG + +EI +  + F +G+    +  E+   L +LE KM+E GY   +T L   DVE+E
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGY-QPETELALHDVEEE 715

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            RE +V +HSERLA+AFGLI+   G  IRI+KNLR+C DCH V KLIS I ER  VVRD 
Sbjct: 716 ERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDA 775

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++G CSCGD+W
Sbjct: 776 NRFHHFKDGVCSCGDYW 792



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 177/403 (43%), Gaps = 8/403 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           +K  ++   +    +  LA  H++I+  GF ++   L  L      L     AR +F  +
Sbjct: 19  SKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSV 78

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITG 147
             P+V  +  LM G+     P  +L +F  +  +  + PN  T+A  I A S   D   G
Sbjct: 79  QRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           + IH      G    L++ S++V MY K   V+ AR+VFD M  ++ + W ++I  + +N
Sbjct: 139 RVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               E++++FR+   +S  R +   L  ++ A A L  L  G   H +  ++GC  +D V
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +  + +Y+KCG +     +F     P +V Y +MI G    G    SL LF E++  G 
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +    T V ++    H  L    I  +     K   +  A   T +  +  +   ++ A 
Sbjct: 319 RLRSSTLVSLVPVSGHLML----IYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESAR 374

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           KL       P+     W  ++S    +G  + A+    ++ +S
Sbjct: 375 KL---FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKS 414



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL+ + ++H   LKS FLS+      L   Y +L + + AR+LFDE  E ++ S+ ++++
Sbjct: 334 HLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMIS 393

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G  + A+ LF++M  +   PN  T   ++ AC+ L  L  GK +H  + +  F+ 
Sbjct: 394 GYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES 453

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V ++L+ MY KC  +  ARR+FDLM  +N V+W ++I  +  + QG EAL +F E  
Sbjct: 454 SIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM- 512

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
             S   P       V+ AC+  G +  G ++ + ++ R G E +    + +VD+  + G
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAG 571


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 315/559 (56%), Gaps = 7/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+   K G   +   +  LI+ Y +    + AR LFD M  P++V+Y +L++GY   G 
Sbjct: 243 VHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGM 302

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              ++ LF++++G  + P+  T   +I   S          +H H+   G   N  V ++
Sbjct: 303 VGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTA 362

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  +Y + ND+D ARR FD M  + + SW ++I  +AQN     A+ +F++    +  RP
Sbjct: 363 LTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNV-RP 421

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   ++S ++ACA LG L  GK  H ++     E N  V +AL+DMY KCGS+  +  +F
Sbjct: 422 NPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIF 481

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + + N +VV++  MI G   +G G  +L L+ +M+   + P   TF+ VL+ACSH GLV 
Sbjct: 482 DSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVK 541

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG--GPLLWGT 406
           EG     SM   YGI P  +H TC+VD+LGR G+L EA++L   I   P    GP +WG 
Sbjct: 542 EGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFEL---ISEFPKSAVGPGIWGA 598

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A  +H   D+A  AS +L E   +    YV LSN Y    ++     +R E K   +
Sbjct: 599 LLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKL 658

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGC+ +EI D+ + F AG+    +   +   L +L  KM E GY       ++ DVE
Sbjct: 659 VKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALY-DVE 717

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E +V +HSE+LA+AFGL++   G  IRI+KNLR+C DCH+  K+IS + +R  VVR
Sbjct: 718 EEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVR 777

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHFR+G CSCGD+W
Sbjct: 778 DASRFHHFRDGVCSCGDYW 796



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 194/388 (50%), Gaps = 10/388 (2%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           +L  +H+  + SGF ++ F  + L   Y  L +   AR++FD +  P+ V + +L+AG  
Sbjct: 141 ALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS 200

Query: 105 NMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
                  AL  F +M G   V P+  T A+V+ A + +A+   G+ +H   E  G   + 
Sbjct: 201 G----SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHE 256

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V + L+ +Y KC D++ AR +FD M   ++V++ ++I  ++ N     ++E+F+E    
Sbjct: 257 HVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
              RP+   L ++I   +  G        H  VV++G + N  V++AL  +Y +   ++ 
Sbjct: 317 GL-RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDS 375

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + + F+ +   ++ ++ +MI G A+ GL   ++ LF +M +  ++PN +T    L AC+ 
Sbjct: 376 ARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQ 435

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G +  G + +  +     +  +    T ++DM  + G + EA  +  S+    +   + 
Sbjct: 436 LGALSLG-KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMD---NKNVVS 491

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESN 431
           W  ++S   LHG+   A++    +++++
Sbjct: 492 WNVMISGYGLHGQGAEALKLYKDMMDAH 519



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 121 GNLVWPNEFTFATVIKACSMLADLITG------------KQIHTHIETFGFQYNLVVCSS 168
            +L++P+  +F+    A S+ +    G            + +H      GF  +  V S+
Sbjct: 104 ADLLFPSPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASA 163

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  +Y   +  + AR+VFD +   + V W +++        G EALE F         RP
Sbjct: 164 LAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLA----GLSGSEALEAFVRMAGAGSVRP 219

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   LASV+ A A +     G+  H    + G   ++ V + L+ +YAKCG +  +  +F
Sbjct: 220 DSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLF 279

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R+  P +VTY ++I G +  G+   S++LF E++  G++P+  T V ++    HS    
Sbjct: 280 DRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPV--HSPFGH 337

Query: 349 EGIQH-LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           E +   L +   K G+  +A   T +  +  R   +D A    ++    P+     W  +
Sbjct: 338 EPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSAR---RAFDAMPEKTMESWNAM 394

Query: 408 LSASRLHGRVDIAVEASNQL 427
           +S    +G  ++AV    Q+
Sbjct: 395 ISGYAQNGLTEMAVALFQQM 414


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/604 (36%), Positives = 355/604 (58%), Gaps = 17/604 (2%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLI 69
           LA SS+    K S   T++ F   ++ C  L  + S    H +    G+ S+ F  + LI
Sbjct: 62  LAFSSM---RKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALI 118

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML------GNL 123
             Y    K + AR++FDE+ + ++VS+TS++ GY   G    A+ LF+ +L       + 
Sbjct: 119 VMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND--VDG 181
           ++ +     +VI ACS +      + IH+ +   GF   + V ++L+D Y K  +  V  
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR++FD +  ++ VS+ SI+  +AQ+   +EA E+FR          N   L++V+ A +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
             G L  GK  H  V+R G E + +V ++++DMY KCG V  + K F+R+ N +V ++T+
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G   +G    +L+LF  MI  G++PN +TFV VL ACSH+GL  EG +  ++M  ++
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+ P  +HY C+VD+LGR G L +AY L + +++ PD   ++W +LL+A R+H  V++A 
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD--SIIWSSLLAACRIHKNVELAE 476

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            +  +L E +      Y+ LS+ YA AG W++V  +R  MK  G+ K PG S +E+  + 
Sbjct: 477 ISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEV 536

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F  G+    +  ++   L EL RK+ E GYV   T  V  DV++E +E  + +HSE+L
Sbjct: 537 HVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV-SNTSSVCHDVDEEEKEMTLRVHSEKL 595

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFG+++   G T+ ++KNLR+C DCH+V KLIS IV+R+FVVRD  RFHHF++G CSC
Sbjct: 596 AIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSC 655

Query: 602 GDFW 605
           GD+W
Sbjct: 656 GDYW 659



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 190/382 (49%), Gaps = 15/382 (3%)

Query: 74  RLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
           R  + Q    LF+  ++  +V S+ S++A     G    ALL F  M    ++P   +F 
Sbjct: 21  RHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFP 80

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
             IKACS L D+ +GKQ H     FG+Q ++ V S+L+ MY  C  ++ AR+VFD +  R
Sbjct: 81  CAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKR 140

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-----LASVINACASLGRLV 247
           ++VSWTS+I  +  N    +A+ +F++      D  +        L SVI+AC+ +    
Sbjct: 141 DIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKG 200

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS--VNYSDKVFNRISNPSVVTYTSMIVG 305
             +  H  V++ G +    V + L+D YAK G   V  + K+F++I +   V+Y S++  
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 306 AAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
            A+ G+   + ++F  ++ ++ +  N +T   VL A SHSG +  G    D + R  G+ 
Sbjct: 261 YAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLE 319

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            D    T ++DM  + GR++ A K    ++   +     W  +++   +HG    A+E  
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMK---NKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 425 NQLIESNQQVANAYVTLSNTYA 446
             +I+S   V   Y+T  +  A
Sbjct: 377 PAMIDSG--VRPNYITFVSVLA 396


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 338/585 (57%), Gaps = 11/585 (1%)

Query: 29  TKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           TK  F   +  C    SL+    VH  ++ SG   + +    LIN Y  L     A ++F
Sbjct: 73  TKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVF 132

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM----L 141
           DE  E  +  + ++        + +  L+L+ +M    +  N FT+  V+KAC +    +
Sbjct: 133 DETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSI 192

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
             L  GK+IH HI   G++ ++ V ++L+D+Y +   V  A  VF  M  +N+VSW+++I
Sbjct: 193 CPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMI 252

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
             +A+N    +ALE+F+    ++ D  PN   + SV+ ACASL  L  GK+ H  V+R G
Sbjct: 253 ACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRG 312

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            +    V + L+ MY +CG ++   +VF+ +    V+++ S+I     +GLG+ ++ +F 
Sbjct: 313 LDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFE 372

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            MI+RG+ P+ +TF+ VL ACSH+GLV+E     +SM  KY I P  +HY C+VD+LGR 
Sbjct: 373 NMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRA 432

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
            RLDEA +L +++   P  GP +WG+LL + R+H  V++A  AS  L E   + A  YV 
Sbjct: 433 NRLDEAIELIQNMDFKP--GPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVL 490

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LS+ YA +  W +V  +R +++  G+ K P CSW+E++ + Y+  +      +  E+ + 
Sbjct: 491 LSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAF 550

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L  L  ++K +GYV  +T +V  D+++E +E IV  HS +LA+AFGLI+  KG  IRI  
Sbjct: 551 LITLLTEIKNQGYV-PQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISN 609

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH   K +S    R+ ++RDVNRFH F++G CSCGD+W
Sbjct: 610 NLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 13/322 (4%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P + TF  +I +C     L  G  +H  +   G   +  + + L++MY     VD A +V
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA---- 241
           FD    + +  W +I  A A  ++G + L ++ + N+      N+     V+ AC     
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPS-NRFTYTYVLKACVVSEL 190

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           S+  L  GK  H  ++R G E +  V + L+D+YA+ G V+Y+  VF  + + ++V++++
Sbjct: 191 SICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSA 250

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIK--PNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           MI   AK  +   +L+LF  M+       PN +T V VL AC+    ++ G + + +   
Sbjct: 251 MIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG-KLVHAYVL 309

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           + G+         ++ M GR G +    ++   ++       + W +L+S   +HG    
Sbjct: 310 RRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK---KRDVISWNSLISIYGMHGLGKK 366

Query: 420 AVEASNQLIESNQQVANAYVTL 441
           A++    +I  N+ V+ +Y+T 
Sbjct: 367 AIQIFENMI--NRGVSPSYITF 386


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 322/559 (57%), Gaps = 7/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS   K G   +   L  LI+ Y +    + AR LFD M +P++V+Y +L++GY   G 
Sbjct: 234 VHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGM 293

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              ++ LF +++   +WPN  T   +I   S     +  + +H  +   GF  N  V ++
Sbjct: 294 VGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTA 353

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +  ++ + ND++ AR+ FD M  + + SW ++I  +AQN     A+ +F +   +   RP
Sbjct: 354 ITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQM-VKLNVRP 412

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   ++S ++ACA LG L  GK  H ++     E N  V +AL+DMYAKCGS++ + ++F
Sbjct: 413 NPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIF 472

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N + N +VV++ +MI G   +G G  +L L+ +M+   + P   TF+ VL+ACSH GLV+
Sbjct: 473 NTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVE 532

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG--GPLLWGT 406
           EG +   SM   Y I P  +H TC+VD+LGR G+L EA++L   I   P    GP +WG 
Sbjct: 533 EGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFEL---ISEFPKSAVGPGVWGA 589

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A  +H   D+A  AS +L E + + +  YV LSN +    ++     +R E K   +
Sbjct: 590 LLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKL 649

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG + +EI ++ + F AG+    +   + S L +L  KM E GY   +T     DVE
Sbjct: 650 VKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGY-RPETEAALYDVE 708

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E +V +HSE+LA+AFGL+S   G  IRI+KNLR+C DCH+  K IS + +R  VVR
Sbjct: 709 EEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVR 768

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHFR+G CSCGD+W
Sbjct: 769 DASRFHHFRDGVCSCGDYW 787



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 190/372 (51%), Gaps = 10/372 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +TF  + L   Y  L +   AR++FD +  P+ V + +L+AG         A+  F +M+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSG----SEAVESFARMV 203

Query: 121 GN-LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
            +  V P+  T A+V+ A + +AD+  G+ +H+  E  G   +  V + L+ +Y KC DV
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           + AR +FD+M   ++V++ ++I  ++ N     ++ +F E        PN   L ++I  
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGL-WPNSSTLVALIPV 322

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            +  G  +  +  HG V++SG   N  V++A+  ++ +   +  + K F+ +   ++ ++
Sbjct: 323 HSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESW 382

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G A+ GL   ++ LF +M+   ++PN +T    L AC+  G +  G + L  +  
Sbjct: 383 NAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIIT 441

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           +  + P+    T ++DM  + G + EA ++  ++    +   + W  +++   LHG+   
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMD---NKNVVSWNAMIAGYGLHGQGAE 498

Query: 420 AVEASNQLIESN 431
           A++    +++++
Sbjct: 499 ALKLYKDMLDAH 510



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 149/326 (45%), Gaps = 17/326 (5%)

Query: 126 PNEFTFATVIKACSML-------ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           P+ F+FA    + + L       A     + +H      G+  +  V S+L  +Y   + 
Sbjct: 105 PDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSR 164

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD AR+VFD +   + V W +++        G EA+E F         RP+   LASV+ 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLA----GLSGSEAVESFARMVCDGSVRPDATTLASVLP 220

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           A A +  +  G+  H    + G   ++ V + L+ +Y+KCG V  +  +F+ +  P +V 
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           Y ++I G +  G+   S++LF E+++ G+ PN  T V ++   S  G  D   Q L    
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGH-DLLAQCLHGFV 339

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            K G   ++   T +  +  R   ++ A    K+    P+     W  ++S    +G  +
Sbjct: 340 LKSGFTANSPVSTAITTLHCRLNDMESAR---KAFDTMPEKTMESWNAMISGYAQNGLTE 396

Query: 419 IAVEASNQLIESNQQVANAYVTLSNT 444
           +AV    Q+++ N  V    +T+S+T
Sbjct: 397 MAVALFEQMVKLN--VRPNPITISST 420


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 331/562 (58%), Gaps = 9/562 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           +H   ++ GF+ +      +++ Y + +    AR++FD M +  N V++++++  Y+   
Sbjct: 242 IHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCD 301

Query: 108 QPQIALLLFQKML---GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
             + AL LF ++L    +++  +  T ATVI+ C+ L DL TG  +H +    GF  +L+
Sbjct: 302 FMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLM 361

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+ MY KC  ++GA R F+ M  R+ VS+T+II  + QN    E L MF E    S
Sbjct: 362 VGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQL-S 420

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              P +  LASV+ ACA L  L  G  +H   +  G   + ++ +AL+DMYAKCG ++ +
Sbjct: 421 GINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTA 480

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            KVF+R+    +V++ +MI+    +G+G  +L LF+ M S G+KP+DVTF+ ++ ACSHS
Sbjct: 481 RKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHS 540

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLV EG    ++M + +GIIP  +HY C+VD+L R G   E +   + + ++PD    +W
Sbjct: 541 GLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPD--VRVW 598

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G LLSA R++  V++    S ++ +   +    +V LSN Y+  G W++   +R   K  
Sbjct: 599 GALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQ 658

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
           G  K PGCSW+EI    + F  G      + +++ + L EL  +MK  GY   ++  VF 
Sbjct: 659 GFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGY-QAESSYVFQ 717

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DVE+E +E ++  HSE+LA+AFG++S+     I + KNLR+C DCH   K IS + +RD 
Sbjct: 718 DVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDI 777

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
            VRD +RFHHF++G C+CGDFW
Sbjct: 778 TVRDASRFHHFKDGICNCGDFW 799



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 208/441 (47%), Gaps = 47/441 (10%)

Query: 68  LINCYVRLKKTQVARQLFDEMLE--PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           L++ Y+   + ++AR +FD+M     NVV +  L+  Y   G  + A+ L+ KMLG  + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           PN FTF  V+KACS L +   G++IH  I+    + N+ V ++LVD Y KC  +D A+ V
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R+VV+W S+I   + +   ++ +        Q+   PN   +  V+ A A +  
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLL-VQMQNDVSPNSSTIVGVLPAVAQVNS 235

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIV 304
           L  GK  HG  VR G   + VV + ++D+Y KC  ++Y+ ++F+ +    + VT+++M+ 
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 305 GAAKYGLGRFSLDLFNEMI---SRGIKPNDVTFVGVLHACSH----------------SG 345
                   R +L+LF +++      I  + VT   V+  C++                SG
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 346 LVDEGI--QHLDSMYRKYGIIP------------DAKHYTCVVDMLGRTGRLDEAYKLAK 391
            V + +    L SMY K GII             DA  +T ++    + G  +E  ++  
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFL 415

Query: 392 SIQ---VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI---ESNQQVANAYVTLSNTY 445
            +Q   ++P+   L    L + + L G    +      +I    ++  + NA   L + Y
Sbjct: 416 EMQLSGINPEKATLA-SVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNA---LIDMY 471

Query: 446 ALAGEWENVHSLRSEMKRTGI 466
           A  G+ +    +   M + GI
Sbjct: 472 AKCGKIDTARKVFDRMHKRGI 492



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 124/218 (56%), Gaps = 6/218 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           ++ C +L  L++   +H   +KSGF+ +    N L++ Y +      A + F+EM   + 
Sbjct: 332 IRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDA 391

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+T++++GY+  G  +  L +F +M  + + P + T A+V+ AC+ LA L  G   H +
Sbjct: 392 VSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCY 451

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               GF  + ++C++L+DMY KC  +D AR+VFD M  R +VSW ++I+A+  +  G EA
Sbjct: 452 AIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEA 511

Query: 214 LEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGK 250
           L +F   N QS   +P+      +I+AC+  G +  GK
Sbjct: 512 LLLFD--NMQSEGLKPDDVTFICLISACSHSGLVAEGK 547



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 133/271 (49%), Gaps = 21/271 (7%)

Query: 133 TVIKACSMLADLITGKQIHTHI--------ETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            ++++C     L  GK IH H+        ET    ++ V    LVD+Y  C+++  AR 
Sbjct: 14  VLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFD-VPFEKLVDLYIACSELKIARH 72

Query: 185 VFDLMGCR--NVVSWTSIIVAHAQNAQGHEALEM-FREFNYQSRDRPNQHMLASVINACA 241
           VFD M  R  NVV W  +I A+A N    EA+++ ++   Y     PN+     V+ AC+
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI--TPNRFTFPFVLKACS 130

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           +L     G+  H  + R   E N  V++ALVD YAKCG ++ + +VF+++    VV + S
Sbjct: 131 ALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNS 190

Query: 302 MIVGAAKYGLGRFSLDLFNEMISR---GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           MI G   + L   S D    ++ +    + PN  T VGVL A +    +  G + +    
Sbjct: 191 MISG---FSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHG-KEIHGFC 246

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            + G + D    T ++D+ G+   +D A ++
Sbjct: 247 VRRGFVGDVVVGTGILDVYGKCQCIDYARRI 277


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 339/608 (55%), Gaps = 43/608 (7%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR----LKKTQV---ARQLFDEML 89
           LQ C     L  +H  +L++  +S+ F  + L+   V      K T +   A  +F ++ 
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PN+  +  L+  +    +P  A   + +ML + +WP+  TF  +IKA S +  ++ G+Q
Sbjct: 79  NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
            H+ I  FGFQ ++ V +SLV MY  C  +  A R+F  MG R+VVSWTS++  + +   
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGM 198

Query: 210 GHEALEMFRE----------------------------FNYQSRDR--PNQHMLASVINA 239
              A EMF E                            F +  R+    N+ ++ SVI++
Sbjct: 199 VENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISS 258

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           CA LG L  G+ A+  VV+S    N ++ +ALVDM+ +CG +  +  VF  +     +++
Sbjct: 259 CAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSW 318

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           +S+I G A +G    ++  F++MIS G  P DVTF  VL ACSH GLV++G++  ++M +
Sbjct: 319 SSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKK 378

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            +GI P  +HY C+VDMLGR G+L EA      + V P+  P+L G LL A +++   ++
Sbjct: 379 DHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPN-APIL-GALLGACKIYKNTEV 436

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           A    N LI+   + +  YV LSN YA AG+W+ + SLR  MK   + K PG S +EI  
Sbjct: 437 AERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDG 496

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG--GKTGLVFVDVEDEAREEIVGLH 537
           +   F  G+   ++  E+  + R+ E  + +   +G  G TG  F DV++E +E  + +H
Sbjct: 497 KINKFTMGDD--QKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+A+G++    G TIRI+KNLR+C DCH V KLIS++  R+ +VRD NRFHHFRNG
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614

Query: 598 SCSCGDFW 605
            CSC D+W
Sbjct: 615 VCSCRDYW 622


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 328/541 (60%), Gaps = 7/541 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + AR++FD + E +VVS+ +++ GY+     + AL LF++M+   V P+
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           E T  +V+ AC+    +  G++IHT ++   GF  +L + ++ + +Y KC DV+ A  +F
Sbjct: 215 EGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF 274

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           + + C++VVSW ++I  +       EAL +F+E   +S + PN   + SV+ ACA LG +
Sbjct: 275 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAI 333

Query: 247 VSGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
             G+  H  + +   G      + ++L+DMYAKCG +  + +VFN + + S+ ++ +MI 
Sbjct: 334 DIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIF 393

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A +G    + DLF+ M   GI+P+D+T VG+L ACSHSGL+D G     S+ + Y I 
Sbjct: 394 GFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNIT 453

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P  +HY C++D+LG  G   EA ++   + ++PDG  ++W +LL A ++HG +++A   +
Sbjct: 454 PKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDG--VIWCSLLKACKMHGNLELAESFA 511

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
            +L+E   + + +YV LSN YA AG WE+V  +R  +   G+ K PGCS +EI    + F
Sbjct: 512 QKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEF 571

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
             G+ L  +  E+  +L E++  ++E G+V   T  V  ++E+E +E  +  HSE+LA+A
Sbjct: 572 IIGDKLHPQSREIYRMLEEMDVLLEEAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIA 630

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLIS   G  + ++KNLR+CR+CH+  KLIS I +R+ V RD  RFHHFR+G CSC D+
Sbjct: 631 FGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDY 690

Query: 605 W 605
           W
Sbjct: 691 W 691



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 198/410 (48%), Gaps = 40/410 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLIN-CYV--RLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
            H++++K+G  +  + L+ L+  C V         A  +F+   EPN++ + +++ G  +
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF------ 159
                  L ++ +M+     PN +TF  ++K+C+       G+QIH  +   G       
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 160 -------------------------QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
                                    Q ++V C++L+  Y    DV  AR+VFD +  R+V
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSW ++I  + +N    EALE+F+E   ++  RP++  L SV++ACA  G +  G+  H 
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEM-MRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 255 VV-VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
           +V    G   +  + +A + +Y+KCG V  +  +F  +S   VV++ ++I G     L +
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTC 372
            +L LF EM+  G  PNDVT + VL AC+H G +D G   H+    R  G+   +   T 
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTS 359

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           ++DM  + G ++ A+++  S+          W  ++    +HGR + A +
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSS---WNAMIFGFAMHGRANAAFD 406


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 329/557 (59%), Gaps = 7/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS   K+G  S+ + L   I+ Y +  K ++A  LF E   P++V+Y +++ GY + G+
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGE 302

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +++L LF++++   +   +   +T++    +   L+    IH +     F  +  V ++
Sbjct: 303 TELSLSLFKELM---LSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTA 359

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  +Y K N+++ AR++FD    +++ SW ++I  + QN    +A+ +FRE    S   P
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-NSEFSP 418

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   +  +++ACA LG L  GK  H +V  +  E +  V++AL+ MYAKCGS+  + ++F
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   + VT+ +MI G   +G G+ +L +F+EM++ GI P  VTF+ VL+ACSH+GLV 
Sbjct: 479 DFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVK 538

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +  +SM  +YG  P  KHY CVVD+LGR G L  A +  +++ + P  GP +W TLL
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQP--GPSVWETLL 596

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R+H   ++A   S +L E +      +V LSN ++    +    ++R   K+  + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG + +EI +  + F +G+    +   +   L +LE KM+E GY   +T L   DVE+E
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGY-QPETELALHDVEEE 715

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            RE +V +HSERLA+AFGLI+   G  IRI+KNLR+C DCH   KLIS I ER  VVRD 
Sbjct: 716 ERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDA 775

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF++G CSCGD+W
Sbjct: 776 NRFHHFKDGVCSCGDYW 792



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 150/320 (46%), Gaps = 1/320 (0%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           +K +F+   +    +  LA  H++I+  GF ++   L  L      L     AR +F  +
Sbjct: 19  SKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSV 78

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITG 147
             P+V  +  LM G+     P  +L +F  +  +  + PN  T+A  I A S   D   G
Sbjct: 79  QRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
             IH      G    L++ S++V MY K   V+ AR+VFD M  ++ + W ++I  + +N
Sbjct: 139 CVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               E++++FR+   +S  R +   L  ++ A A L  L  G   H +  ++GC  +D V
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +  + +Y+KCG +  +  +F     P +V Y +MI G    G    SL LF E++  G 
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 328 KPNDVTFVGVLHACSHSGLV 347
           K    T V ++    H  L+
Sbjct: 319 KLKSSTLVSLVPVSGHLMLI 338



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 2/239 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL+ + ++H   LKS FLS+T     L   Y +L + + AR+LFDE  E ++ S+ ++++
Sbjct: 334 HLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMIS 393

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G  + A+ LF++M  +   PN  T   ++ AC+ L  L  GK +H  + +  F+ 
Sbjct: 394 GYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES 453

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++ V ++L+ MY KC  +  ARR+FD M  +N V+W ++I  +  +  G EAL +F E  
Sbjct: 454 SIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEM- 512

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
             S   P       V+ AC+  G +  G ++ + ++ R G E +    + +VD+  + G
Sbjct: 513 LNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAG 571


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 324/559 (57%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++KS F  +    N LI  Y  L + + A  +F  M   +VVS+T+++A  ++   
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  A+  ++ M    + P+E T  +V+ AC+ +  L  G ++H      G   +++V +S
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  VD A  VF  +  +NVVSWTS+I+    N +  EAL  FR+   +   +P
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM--KESMKP 498

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L SV++ACA +G L+ GK  H   +R+G  F+  + +A++DMY +CG    +   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N      V  +  ++ G A+ G  + +++LF++M+   I P+++TF+ +L ACS SG+V 
Sbjct: 559 NS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+++ + M  KY + P+ KHY CVVD+LGR G+LD+AY   + + + PD    +WG LL
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAA--IWGALL 675

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H  V++   A+ ++ E + +    Y+ L N YA  G W+ V  +RS M+  G+  
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSWVEI+ + +AF +G+    +  E+  +L     KMKE G+  G     F    + 
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGF--GNLKSSFTSEIES 793

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           +R +I   HSER A+AFGLI+   G+ I + KNL MC  CH++ K IS IV R+  VRDV
Sbjct: 794 SRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDV 853

Query: 589 NRFHHFRNGSCSCGD--FW 605
             +HHF++G CSCGD  +W
Sbjct: 854 EEYHHFKDGVCSCGDEGYW 872



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 212/401 (52%), Gaps = 5/401 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N L++ +VR      A  +F +M E +V S+  L+ GY   G    AL L+ +ML   + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           PN +TF +V+K C+ ++D+  GK+IH H+  FGF+ ++ V ++L+ MY KC D+  AR +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R+ +SW ++I  + +N  G E LE+F      S D P+   + +V +AC  L  
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD-PDLITMTTVASACELLDN 314

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  HG VV+S    +  + ++L+ MY+  G +  ++ VF+R+ +  VV++T+MI  
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
              + L   +++ +  M   GI P+++T V VL AC+  G +D GI+ L  +  K G++ 
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVS 433

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
                  ++DM  +   +D A ++ ++I        + W +L+   R++ R   A+    
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRNIS---GKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           Q+ ES +  +   +++ +  A  G       + +   RTG+
Sbjct: 491 QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGV 531



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 205/400 (51%), Gaps = 10/400 (2%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  +  +A    +H+ +++ GF S+    N LI  YV+      AR LFD+M 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + + +S+ ++++GY   G     L LF  M    V P+  T  TV  AC +L +   G+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H ++    F  ++ + +SL+ MY     ++ A  VF  M  ++VVSWT++I +   +  
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A+E ++    +    P++  L SV++ACA +G L  G   H + +++G   + +V++
Sbjct: 381 PFKAVETYKMMELEGI-LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSN 439

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+DMY+KC  V+ + +VF  IS  +VV++TS+I+G  +     F   LF   +   +KP
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILG-LRINNRSFEALLFFRQMKESMKP 498

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VT + VL AC+  G +  G + + +   + G+  D      ++DM  R GR   A   
Sbjct: 499 NSVTLISVLSACARIGALMRG-KEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQ 557

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             S + D       W  LL+     G+  +AVE  ++++E
Sbjct: 558 FNSQKKDVTA----WNILLTGYAQQGQAKLAVELFDKMLE 593


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/543 (39%), Positives = 330/543 (60%), Gaps = 9/543 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F +N LIN YV+      A QLFD+M + NV+S+T++++ Y      Q AL L   ML +
Sbjct: 97  FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V PN +T+++V+++C+ ++D+   + +H  I   G + ++ V S+L+D++ K  + + A
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDA 213

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
             VFD M   + + W SII   AQN++   ALE+F+    ++     Q  L SV+ AC  
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK-RAGFIAEQATLTSVLRACTG 272

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  G  AH  +V+   +   ++ +ALVDMY KCGS+  + +VFN++    V+T+++M
Sbjct: 273 LALLELGMQAHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTM 330

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G A+ G  + +L LF  M S G KPN +T VGVL ACSH+GL+++G  +  SM + YG
Sbjct: 331 ISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG 390

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           I P  +HY C++D+LG+ G+LD+A KL   ++ +PD   + W TLL A R+   + +A  
Sbjct: 391 IDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA--VTWRTLLGACRVQRNMVLAEY 448

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           A+ ++I  + + A  Y  LSN YA + +W++V  +R+ M+  GI KEPGCSW+E+  Q +
Sbjct: 449 AAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
           AF  G+    +  EV   L +L  ++   GYV  +T  V  D+E E  E+ +  HSE+LA
Sbjct: 509 AFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYV-PETNFVLQDLEGEQMEDSLRHHSEKLA 567

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           LAFGL+++P    IRI KNLR+C DCH   KL S +  R  V+R   R+HHF++G CSCG
Sbjct: 568 LAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCG 627

Query: 603 DFW 605
           D+W
Sbjct: 628 DYW 630



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 157/302 (51%), Gaps = 27/302 (8%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R N R + +T   +   L+ C  +  +  +H  I+K G  S+ F  + LI+ + +L +
Sbjct: 153 MLRDNVRPNVYT---YSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + A  +FDEM+  + + + S++ G+    +  +AL LF++M        + T  +V++A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ LA L  G Q H HI    +  +L++ ++LVDMY KC  ++ A RVF+ M  R+V++W
Sbjct: 270 CTGLALLELGMQAHVHI--VKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------K 250
           +++I   AQN    EAL++F      S  +PN   +  V+ AC+  G L  G       K
Sbjct: 328 STMISGLAQNGYSQEALKLFERMK-SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386

Query: 251 VAHGV-VVRS--GCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGA 306
             +G+  VR   GC         ++D+  K G ++ + K+ N +   P  VT+ +++ GA
Sbjct: 387 KLYGIDPVREHYGC---------MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL-GA 436

Query: 307 AK 308
            +
Sbjct: 437 CR 438



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 148/293 (50%), Gaps = 12/293 (4%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +W +  T++ +IK C     +  G  I  H+   G +  + + + L++MY K N ++ A 
Sbjct: 57  LWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAH 116

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           ++FD M  RNV+SWT++I A+++     +ALE+      +   RPN +  +SV+ +C  +
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELL-VLMLRDNVRPNVYTYSSVLRSCNGM 175

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             +   ++ H  +++ G E +  V SAL+D++AK G    +  VF+ +     + + S+I
Sbjct: 176 SDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG 362
            G A+      +L+LF  M   G      T   VL AC+   L++ G+Q H+  +     
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQD 292

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +I +      +VDM  + G L++A ++   ++   +   + W T++S    +G
Sbjct: 293 LILN----NALVDMYCKCGSLEDALRVFNQMK---ERDVITWSTMISGLAQNG 338


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 324/559 (57%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++KS F  +    N LI  Y  L + + A  +F  M   +VVS+T+++A  ++   
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  A+  ++ M    + P+E T  +V+ AC+ +  L  G ++H      G   +++V +S
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  VD A  VF  +  +NVVSWTS+I+    N +  EAL  FR+   +   +P
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM--KESMKP 498

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L SV++ACA +G L+ GK  H   +R+G  F+  + +A++DMY +CG    +   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N      V  +  ++ G A+ G  + +++LF++M+   I P+++TF+ +L ACS SG+V 
Sbjct: 559 NS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+++ + M  KY + P+ KHY CVVD+LGR G+LD+AY   + + + PD    +WG LL
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAA--IWGALL 675

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H  V++   A+ ++ E + +    Y+ L N YA  G W+ V  +RS M+  G+  
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSWVEI+ + +AF +G+    +  E+  +L     KMKE G+  G     F    + 
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGF--GNLKSSFTSEIES 793

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           +R +I   HSER A+AFGLI+   G+ I + KNL MC  CH++ K IS IV R+  VRDV
Sbjct: 794 SRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDV 853

Query: 589 NRFHHFRNGSCSCGD--FW 605
             +HHF++G CSCGD  +W
Sbjct: 854 EEYHHFKDGVCSCGDEGYW 872



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 212/401 (52%), Gaps = 5/401 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N L++ +VR      A  +F +M E +V S+  L+ GY   G    AL L+ +ML   + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           PN +TF +V+K C+ ++D+  GK+IH H+  FGF+ ++ V ++L+ MY KC D+  AR +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  R+ +SW ++I  + +N  G E LE+F      S D P+   + +V +AC  L  
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD-PDLITMTTVASACELLDN 314

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G+  HG VV+S    +  + ++L+ MY+  G +  ++ VF+R+ +  VV++T+MI  
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
              + L   +++ +  M   GI P+++T V VL AC+  G +D GI+ L  +  K G++ 
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVS 433

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
                  ++DM  +   +D A ++ ++I        + W +L+   R++ R   A+    
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRNIS---GKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           Q+ ES +  +   +++ +  A  G       + +   RTG+
Sbjct: 491 QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGV 531



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 205/400 (51%), Gaps = 10/400 (2%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  +  +A    +H+ +++ GF S+    N LI  YV+      AR LFD+M 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + + +S+ ++++GY   G     L LF  M    V P+  T  TV  AC +L +   G+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H ++    F  ++ + +SL+ MY     ++ A  VF  M  ++VVSWT++I +   +  
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A+E ++    +    P++  L SV++ACA +G L  G   H + +++G   + +V++
Sbjct: 381 PFKAVETYKMMELEGI-LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSN 439

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+DMY+KC  V+ + +VF  IS  +VV++TS+I+G  +     F   LF   +   +KP
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILG-LRINNRSFEALLFFRQMKESMKP 498

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VT + VL AC+  G +  G + + +   + G+  D      ++DM  R GR   A   
Sbjct: 499 NSVTLISVLSACARIGALMRG-KEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQ 557

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             S + D       W  LL+     G+  +AVE  ++++E
Sbjct: 558 FNSQKKDVTA----WNILLTGYAQQGQAKLAVELFDKMLE 593


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/602 (36%), Positives = 335/602 (55%), Gaps = 40/602 (6%)

Query: 37   LQECKHLISLA---SVHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            L  C  L  L     +H   L++G  + N+F    L++ Y   K+ +  R +FD ++   
Sbjct: 541  LPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT 600

Query: 93   VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIH 151
            V  + +L+AGY        AL LF +M+    + PN  TFA+V+ AC         + IH
Sbjct: 601  VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIH 660

Query: 152  THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA-------- 203
             +I   GF  +  V ++L+DMY +   V+ ++ +F  M  R++VSW ++I          
Sbjct: 661  GYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720

Query: 204  -------HAQNAQGHEALEMFREFNYQS--RDRPNQHMLASVINACASLGRLVSGKVAHG 254
                     Q  QG +  + F ++        +PN   L +V+  CA+L  L  GK  H 
Sbjct: 721  DALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHA 780

Query: 255  VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
              V+     +  V SALVDMYAKCG +N + +VF+++   +V+T+  +I+    +G G  
Sbjct: 781  YAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEE 840

Query: 315  SLDLFNEMISRG------IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            +L+LF  M + G      I+PN+VT++ +  ACSHSG+VDEG+    +M   +G+ P   
Sbjct: 841  ALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGD 900

Query: 369  HYTCVVDMLGRTGRLDEAYKLAKSI-----QVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
            HY C+VD+LGR+GR+ EAY+L  ++     +VD       W +LL A R+H  V+    A
Sbjct: 901  HYACLVDLLGRSGRVKEAYELINTMPSNLNKVDA------WSSLLGACRIHQSVEFGEIA 954

Query: 424  SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYA 483
            +  L      VA+ YV +SN Y+ AG W+    +R +MK  G+ KEPGCSW+E  D+ + 
Sbjct: 955  AKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHK 1014

Query: 484  FYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLAL 543
            F +G+A   +  E+   L  L ++M++ GYV      V  +V+DE +E ++  HSERLA+
Sbjct: 1015 FLSGDASHPQSKELHEYLETLSQRMRKEGYVP-DISCVLHNVDDEEKETMLCGHSERLAI 1073

Query: 544  AFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603
            AFGL++ P G TIR+ KNLR+C DCH   K+IS IV+R+ ++RDV RFHHF NG+CSCGD
Sbjct: 1074 AFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGD 1133

Query: 604  FW 605
            +W
Sbjct: 1134 YW 1135



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 17/381 (4%)

Query: 49  VHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           +H+ + K G    S+    N L+N Y +      ARQ+FD++ + + VS+ S++A     
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF 411

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML-ADLITGKQIHTHIETFGFQYNLVV 165
            + +++L LF+ ML   V P  FT  +V  ACS +   +  GKQ+H +    G       
Sbjct: 412 EEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYT 470

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LV MY +   V+ A+ +F +   +++VSW ++I + +QN +  EAL M+        
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEAL-MYVYLMIVDG 529

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF-NDVVASALVDMYAKCGSVNYS 284
            RP+   LASV+ AC+ L RL  G+  H   +R+G    N  V +ALVDMY  C      
Sbjct: 530 VRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKG 589

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSH 343
             VF+ +   +V  + +++ G A+      +L LF EMIS     PN  TF  VL AC  
Sbjct: 590 RLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVR 649

Query: 344 SGLVD--EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
             +    EGI        K G   D      ++DM  R GR++    ++K+I    +   
Sbjct: 650 CKVFSDKEGIH---GYIVKRGFGKDKYVQNALMDMYSRMGRVE----ISKTIFGRMNKRD 702

Query: 402 LL-WGTLLSASRLHGRVDIAV 421
           ++ W T+++   + GR D A+
Sbjct: 703 IVSWNTMITGCIVCGRYDDAL 723



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 25/305 (8%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +     CK       +H  I+K GF  + +  N L++ Y R+ + ++++ +F  M
Sbjct: 639 TFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRM 698

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKML------------------GNLVWPNEFT 130
            + ++VS+ +++ G I  G+   AL L  +M                   G    PN  T
Sbjct: 699 NKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVT 758

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
             TV+  C+ LA L  GK+IH +        ++ V S+LVDMY KC  ++ A RVFD M 
Sbjct: 759 LMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMP 818

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNY---QSRD--RPNQHMLASVINACASLGR 245
            RNV++W  +I+A+  + +G EALE+FR        +R+  RPN+    ++  AC+  G 
Sbjct: 819 IRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGM 878

Query: 246 LVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMI 303
           +  G  + H +    G E      + LVD+  + G V  + ++ N + SN + V   S +
Sbjct: 879 VDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSL 938

Query: 304 VGAAK 308
           +GA +
Sbjct: 939 LGACR 943



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCNDVDGARR 184
           + F F  V+KA + + DL  GKQIH H+  FG     ++ V +SLV+MYGKC D+  AR+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL- 243
           VFD +  R+ VSW S+I    +  +   +L +FR    ++ D P    L SV +AC+ + 
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVD-PTSFTLVSVAHACSHVR 447

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           G +  GK  H   +R+G +      +ALV MYA+ G VN +  +F       +V++ ++I
Sbjct: 448 GGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
              ++      +L     MI  G++P+ VT   VL ACS 
Sbjct: 507 SSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQ 546



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 15/236 (6%)

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+   W  ++ +   ++   +A+  +           N     +V+ A A++  L  GK 
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDN-FAFPAVLKAAAAVHDLCLGKQ 351

Query: 252 AHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
            H  V + G     +  VA++LV+MY KCG +  + +VF+ I +   V++ SMI    ++
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF 411

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SGLVDEGIQHLDSMYRKYGIIPDAK 368
                SL LF  M+S  + P   T V V HACSH  G V  G Q      R      D +
Sbjct: 412 EEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRN----GDLR 467

Query: 369 HYT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-WGTLLSASRLHGRVDIAV 421
            YT   +V M  R GR+++A  L        DG  L+ W T++S+   + R + A+
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVF----DGKDLVSWNTVISSLSQNDRFEEAL 519


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/592 (35%), Positives = 343/592 (57%), Gaps = 5/592 (0%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV 73
           AASSL      +  H     I    E + L     VH+ ++K+ +    +    LI  YV
Sbjct: 28  AASSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYV 87

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           R      AR + D M E NVVS+T++++GY   G+   AL LF +ML      NEFT AT
Sbjct: 88  RCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLAT 147

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           V+ +C +   +   +Q+H+ +    F+ ++ V SSL+DMYGK  ++  AR+VFD++  R+
Sbjct: 148 VLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERD 207

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
            VS T+II  +AQ     EAL++FR+  Y S  + N     +++ + + L  L  GK  H
Sbjct: 208 TVSCTAIISGYAQLGLDDEALDLFRQL-YSSGMQCNYVTFTTLLTSLSGLASLNYGKQVH 266

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
           G+++R    F  V+ ++L+DMY+KCG + YS +VF+ +   S +++ +M++G  ++G+G+
Sbjct: 267 GLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQ 326

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
             + LF  M +  +KP+ VT + VL  CSH GLVDEG+   D + ++   +    HY CV
Sbjct: 327 EVVQLFRTM-TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCV 385

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           +D+LGR+G+L +A  L + +  +P   P +WG+LL A R+H  V +    + +L++    
Sbjct: 386 IDLLGRSGQLQKALDLIEHMPFEPT--PAIWGSLLGACRVHINVSVGEVVAQKLLDMEPG 443

Query: 434 VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFER 493
            A  YV LSN YA AG W++V  +R  M    + KEP  SW+ +    + F++      R
Sbjct: 444 NAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPR 503

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
             ++ + ++E+   +K  G+V      V  DV+DE +E ++  HSE+LA+ FGL++ P G
Sbjct: 504 KKDINAKIKEVYVDVKAAGFV-PDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPG 562

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +TI++MKNLR+C DCH+  K +S +  R+  +RD NRFH  ++G+C+CGD+W
Sbjct: 563 LTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/627 (34%), Positives = 341/627 (54%), Gaps = 62/627 (9%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL------FDE 87
           + Q++ CK +  L  VH+ ++K+G   +    N +    +RL  T   R +      FD+
Sbjct: 19  VPQIKACKSMRELKQVHAFLVKTGQTHD----NAIATEILRLSATSDFRDIGYALSVFDQ 74

Query: 88  MLEPNVVSYTSLMAGYINMGQPQI-ALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLI 145
           + E N  ++ +++          + ALL+F +ML    V PN+FTF +V+KAC+++A L 
Sbjct: 75  LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134

Query: 146 TGKQIHTHIETFGF---------------------------------------------- 159
            GKQ+H  +  FG                                               
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERG 194

Query: 160 -QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            ++N+V+C+ +VD Y +  ++  AR +FD M  R+VVSW  +I  +AQN    EA+E+F 
Sbjct: 195 REFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFH 254

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
                    PN+  L SV+ A + LG L  GK  H    ++    +DV+ SALVDMYAKC
Sbjct: 255 RMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKC 314

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GS+  + +VF R+   +V+T+ ++I G A +G      +  + M   GI P+DVT++ +L
Sbjct: 315 GSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAIL 374

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACSH+GLVDEG    + M    G+ P  +HY C+VD+LGR G L+EA +L  ++ + PD
Sbjct: 375 SACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPD 434

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
              ++W  LL AS++H  + I + A+  L++     + AYV LSN YA +G W+ V ++R
Sbjct: 435 D--VIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVR 492

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MK   I K+PGCSW+EI    + F   +    R  ++ S+L E+  K+   G++   T
Sbjct: 493 LMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTT 552

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V + ++++ +E ++  HSE++A+AFGLIS P    + I+KNLR+C DCH   KLIS +
Sbjct: 553 Q-VLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKM 611

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            ER  V+RD  RFHHF +GSCSC D+W
Sbjct: 612 YERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 342/564 (60%), Gaps = 12/564 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +KSGF   +   N  I+ Y +  +  +A Q+F++M   N+VS+ +++AG+ + G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL--VVC 166
            + +L+LFQ+M G    P+EFTF + +KAC  L  +  G QIH  + T GF  ++  ++ 
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA 246

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           S++VD+Y KC  +  A++VFD +  +N++SW+++I   AQ     EA+++FR+   +S  
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR-ESVS 305

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             +  +L+ ++   A L  +  GK  H  +++     +  VA++++DMY KCG    +++
Sbjct: 306 NVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAER 365

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+ +   +VV++T MI G  K+GLG  ++ LFN M   GI+ ++V ++ +L ACSHSGL
Sbjct: 366 LFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGL 425

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           + E  ++   +   + + P+ +HY C+VD+LGR G+L EA  L +++++ P+ G  +W T
Sbjct: 426 IRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEG--IWQT 483

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LLSA R+HG ++I  E    L   +      YV +SN YA AG W+    +R  +K  G+
Sbjct: 484 LLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGL 543

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV--D 524
            KE G SWVEI  + + FY G+       ++  +L+E+ER++KE   VG   GL F   D
Sbjct: 544 KKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEE--VGYAYGLRFALHD 601

Query: 525 VEDEAREEIVGLHSERLALAFGLISI---PKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
           VE+E++EE + +HSE+LA+   L+      KG  IR+ KNLR+C DCH+  K +S I+++
Sbjct: 602 VEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKK 661

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
            FVVRD NRFH F +G CSCGD+W
Sbjct: 662 VFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 208/405 (51%), Gaps = 19/405 (4%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           +C     F Q LQ          VH+  +  GF  +    N LI+ Y +  +  +A  +F
Sbjct: 13  NCSKNGLFDQGLQ----------VHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVF 62

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D MLE NVVS+T+LM GY+  G  + +L L  +M  + V PNEFTF+T +KAC  L  + 
Sbjct: 63  DRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVE 122

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            G QIH      GF++  VV ++ +DMY KC  +  A +VF+ M  RN+VSW ++I  H 
Sbjct: 123 NGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHT 182

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEF 263
               G ++L +F+    Q  + P++    S + AC +LG +  G   H  ++  G     
Sbjct: 183 HEGNGRKSLVLFQRMQGQG-EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISI 241

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
            +++ASA+VD+YAKCG +  + KVF+RI   ++++++++I G A+ G    ++DLF ++ 
Sbjct: 242 RNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR 301

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
                 +      ++   +   LV++G Q H   +    G+  D      ++DM  + G 
Sbjct: 302 ESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGL--DISVANSIIDMYLKCGL 359

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            +EA +L   +QV      + W  +++    HG  + A+   N++
Sbjct: 360 TEEAERLFSEMQVR---NVVSWTVMITGYGKHGLGEKAIHLFNRM 401



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 161/305 (52%), Gaps = 5/305 (1%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            A +++ CS       G Q+H      GF ++L++ + L+DMYGKC+ VD A  VFD M 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT+++  + Q      +L +  E  Y S  +PN+   ++ + AC +LG + +G 
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGY-SGVKPNEFTFSTSLKACGALGVVENGM 125

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG+ V+SG E+  VV +A +DMY+KCG +  +++VFN++   ++V++ +MI G    G
Sbjct: 126 QIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEG 185

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKH 369
            GR SL LF  M  +G  P++ TF   L AC   G +  G Q H   + R + I      
Sbjct: 186 NGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNII 245

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
            + +VD+  + G L EA K+   I+       + W  L+      G +  A++   QL E
Sbjct: 246 ASAIVDLYAKCGYLFEAQKVFDRIE---QKNLISWSALIQGFAQEGNLLEAMDLFRQLRE 302

Query: 430 SNQQV 434
           S   V
Sbjct: 303 SVSNV 307


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 328/558 (58%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  +LK+ F+ N F  N L++ Y +  +     +LF EM E + +SY  ++  Y   GQ
Sbjct: 263 VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQ 322

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  LF+K+        +F FAT++   +   +L  G+QIH    T G  +   V ++
Sbjct: 323 FKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENA 382

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KCN    A+++FD + C++ V WT++I A+ Q  +  E + +F +   ++    
Sbjct: 383 LVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMR-RTGVPA 441

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   AS++ ACA+L  +  G+  H +++RSG   N    SAL+D YAKCG +  + K F
Sbjct: 442 DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   + V++ ++I   A+ G    +L+ F +MI  G KP+ V+F+ VL ACSH G V+
Sbjct: 502 GEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVE 561

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E + H +SM + Y + P  +HYT +VD+L R GR DEA KL   +  +P    ++W ++L
Sbjct: 562 EALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEP--SEIMWSSVL 619

Query: 409 SASRLHGRVDIAVEASNQLIE-SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           ++ R+H   ++A +A+++L    + + A  Y+ +SN YA+AG+W+NV  ++  M+  G+ 
Sbjct: 620 NSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVR 679

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K P  SWVEI+ QT+ F A +       ++L  +  L ++M+++GY    T     DV++
Sbjct: 680 KVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGY-KPDTTCALHDVDE 738

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             + E +  HSER A+AF L++ P G  I +MKNLR C DCH   K+IS IVER+ +VRD
Sbjct: 739 VIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRD 798

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF++G CSCGD+W
Sbjct: 799 SSRFHHFKDGVCSCGDYW 816



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 204/392 (52%), Gaps = 7/392 (1%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E K++I    +H+ ++K G+  N    N L++ Y +     +A QLF  ML  + V++ S
Sbjct: 154 ETKNVI--VQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNS 211

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           LM GY N G  + A+ LF ++  + + P++FTFA ++ A   L D   G+Q+H  +    
Sbjct: 212 LMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTN 271

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F +N+ V ++L+D Y K + VD   ++F  M   + +S+  +I ++A N Q  E+ ++FR
Sbjct: 272 FVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFR 331

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +  +   DR  Q   A++++   S   L  G+  H   +  G  F   V +ALVDMYAKC
Sbjct: 332 KLQFTRFDR-RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKC 390

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
                + K+F+ I+  S V +T+MI    + G     +++F++M   G+  +  TF  +L
Sbjct: 391 NGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASIL 450

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC++   +  G Q L S+  + G + +    + ++D   + G + +A    KS    P+
Sbjct: 451 RACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDA---IKSFGEMPE 506

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
              + W  L+SA   +G VD  + +  Q+I+S
Sbjct: 507 RNSVSWNALISAYAQNGNVDGTLNSFQQMIQS 538



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 7/357 (1%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT +LN +I+ +++  K   AR+LFD M+E   VS+T L+ GY+   Q + A  L+  M 
Sbjct: 73  NTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+  T  T++     L       QIHTH+   G++YNL+VC+SLVD Y K + + 
Sbjct: 133 RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY 192

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A ++F  M  ++ V++ S++  ++      EA+E+F E  + S  +P+    A++++A 
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL-HNSGIKPSDFTFAALLSAA 251

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             L     G+  HG V+++   +N  V +AL+D Y+K   V+   K+F  +     ++Y 
Sbjct: 252 VGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYN 311

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYR 359
            +I   A  G  + S DLF ++           F  +L   + S  +  G Q H  ++  
Sbjct: 312 VVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI-- 369

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
             G   +++    +VDM  +     EA K+  +I        + W  ++SA    G+
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACK---STVPWTAMISAYVQKGK 423


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 354/603 (58%), Gaps = 14/603 (2%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLIN 70
           A  + +   K S   T++ F   ++ C  L+ + S    H +    G+ S+ F  + LI 
Sbjct: 60  ALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIV 119

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML------GNLV 124
            Y    K + AR++FDE+ + N+VS+TS++ GY   G    A+ LF+ +L         +
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATM 179

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND--VDGA 182
           + +     +VI ACS +A     + IH+ +   GF   + V ++L+D Y K  +  V  A
Sbjct: 180 FLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           R++FD +  ++ VS+ SI+  +AQ+   +EA ++FR    +     N   L++V+ A + 
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSH 299

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            G L  GK  H  V+R G E + +V ++++DMY KCG V  +   F+R+ N +V ++T+M
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAM 359

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G   +G    +L+LF  MI  G++PN +TFV VL ACSH+GL D G    ++M  ++G
Sbjct: 360 IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFG 419

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           + P  +HY C+VD+LGR G L +AY L + ++++PD   ++W +LL+A R+H  V++A  
Sbjct: 420 VEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDS--IIWSSLLAACRIHKNVELAEI 477

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           +  +L E +      Y+ LS+ YA +G W++V  +R  MK  G+ K PG S +E+  + +
Sbjct: 478 SVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVH 537

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F  G+    +  ++   L EL RK+ E GYV   T  V  DV++E +E  + +HSE+LA
Sbjct: 538 VFLIGDEEHPQREKIYEFLAELNRKLLEAGYV-SNTSSVCHDVDEEEKEMTLRVHSEKLA 596

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           +AFG+++   G T+ ++KNLR+C DCH+V KLIS IV+R+FVVRD  RFHHF++G CSCG
Sbjct: 597 IAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCG 656

Query: 603 DFW 605
           D+W
Sbjct: 657 DYW 659



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 187/385 (48%), Gaps = 21/385 (5%)

Query: 74  RLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
           R  + Q    LF+  ++  +V S+ S++A     G    AL  F  M    ++P   +F 
Sbjct: 21  RHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFP 80

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
             IKACS L D+ +GKQ H     FG+Q ++ V S+L+ MY  C  ++ AR+VFD +  R
Sbjct: 81  CAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKR 140

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML-----ASVINACASLGRLV 247
           N+VSWTS+I  +  N    +A+ +F++   +  D      L      SVI+AC+ +    
Sbjct: 141 NIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKG 200

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS--VNYSDKVFNRISNPSVVTYTSMIVG 305
             +  H  V++ G +    V + L+D YAK G   V  + K+F++I +   V+Y S++  
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 306 AAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
            A+ G+   + D+F  +I   +   N +T   VL A SHSG +  G    D + R  G+ 
Sbjct: 261 YAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLE 319

Query: 365 PDAKHYTCVVDMLGRTGRLDE---AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            D    T ++DM  + GR++    A+   K+  V        W  +++   +HG    A+
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRS------WTAMIAGYGMHGHAAKAL 373

Query: 422 EASNQLIESNQQVANAYVTLSNTYA 446
           E    +I+S   V   Y+T  +  A
Sbjct: 374 ELFPAMIDSG--VRPNYITFVSVLA 396


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 334/557 (59%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ +    L++ Y +      A+++FD + + ++V + +L++G  +  Q
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQ 384

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF +M       N  T A V+K+ + L  +   +Q+H   E  GF  +  V + 
Sbjct: 385 HAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNG 444

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y KC+ ++ A RVF+  G  +++++TS+I A +Q   G +A+++F E   +  D P
Sbjct: 445 LIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLD-P 503

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  +L+S++NACASL     GK  H  +++     +    +ALV  YAKCGS+  +D  F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAF 563

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +    VV++++MI G A++G G+ +LD+F+ M+   I PN +T   VL AC+H+GLVD
Sbjct: 564 SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD 623

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  ++ +SM   +GI    +HY C++D+LGR G+LD+A +L  S+    +    +WG LL
Sbjct: 624 EAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAA--VWGALL 681

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +ASR+H   ++   A+ +L     + +  +V L+NTYA AG W++V  +R  MK + + K
Sbjct: 682 AASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKK 741

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP  SWVE++D+ + F  G+    R  ++ + L EL   M + GYV     +   DV+  
Sbjct: 742 EPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYV-PNVEVDLHDVDKN 800

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSERLA+AF LIS P G  IR+ KNLR+CRDCH  FK ISDIV R+ ++RD+
Sbjct: 801 EKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDI 860

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHFR+G+CSC D+W
Sbjct: 861 NRFHHFRDGACSCRDYW 877



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 202/387 (52%), Gaps = 15/387 (3%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           S  T    + +    + L+  A +H+ +LKSG  +     NHL++ Y + +    AR++F
Sbjct: 3   SLETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVF 60

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           DE+ +P  VS++SL+  Y N   P+ AL  F+ M    V  NEF    V+K C+   D  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CA--PDAG 117

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAH 204
            G Q+H      G   ++ V ++LV MYG    VD AR VFD  GC RN VSW  ++ A+
Sbjct: 118 FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            +N +   A+++F E  +    +PN+   + V+NAC     L +G+  H +V+R+G + +
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGV-QPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKD 236

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
              A+ALVDMY+K G +  +  VF ++    VV++ + I G   +G  + +L+L  +M S
Sbjct: 237 VFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--VVDMLGRTGR 382
            G+ PN  T   +L AC+ SG  + G Q    M +      D+ +Y    +VDM  + G 
Sbjct: 297 SGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANA---DSDNYIAFGLVDMYAKHGL 353

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           LD+A K+   I   P    +LW  L+S
Sbjct: 354 LDDAKKVFDWI---PQRDLVLWNALIS 377



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 208/397 (52%), Gaps = 9/397 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++++G+  + FT N L++ Y +L   ++A  +F ++ E +VVS+ + ++G +  G 
Sbjct: 224 VHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGH 283

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            Q AL L  +M  + + PN FT ++++KAC+       G+QIH  +       +  +   
Sbjct: 284 DQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG 343

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY K   +D A++VFD +  R++V W ++I   +  AQ  EAL +F     +  D  
Sbjct: 344 LVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFD-V 402

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  LA+V+ + ASL  +   +  H +  + G   +  V + L+D Y KC  +NY+ +VF
Sbjct: 403 NRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVF 462

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            +  +  ++ +TSMI   ++   G  ++ LF EM+ +G+ P+      +L+AC+     +
Sbjct: 463 EKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYE 522

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H   + R++  + D      +V    + G +++A      +   P+ G + W  +
Sbjct: 523 QGKQVHAHLIKRQF--MSDVFAGNALVYTYAKCGSIEDADLAFSGL---PEKGVVSWSAM 577

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           +     HG    A++  +++++  + ++  ++T+++ 
Sbjct: 578 IGGLAQHGHGKRALDVFHRMVD--EHISPNHITMTSV 612


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 340/578 (58%), Gaps = 26/578 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD-EMLEPNVVSYTSLMAGYINMG 107
           +H   +++G+  +    + L+  Y +  +   AR++FD   L   + ++ ++++GY + G
Sbjct: 341 IHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAG 400

Query: 108 QPQIALLLFQKMLGNLV------WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
             + ALL+F++M            P+EFTFA+++KAC  L     G Q+H  +   GF  
Sbjct: 401 HGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFST 460

Query: 162 --NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
             N ++  +LVDMY KC  +  A +VF+ +  +N + WT+++V HAQ  Q  EALE+FR 
Sbjct: 461 ASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRR 520

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
           F ++S  R + H+L+S++   A    +  G+  H   V+S    +    +++VDMY KCG
Sbjct: 521 F-WRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCG 579

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
             + ++++F  I   +VV++T+MI G  K+GLGR ++ +F EM + G++P++VT++ +L 
Sbjct: 580 LPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLS 639

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACSH+GLVDE  ++   + R   + P A+HY C+VD+LGR G L EA  L +++ ++P  
Sbjct: 640 ACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTV 699

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
           G  +W TLLSA R+H  V +  EA + L+  +      YVTLSN +A AG W   H +R 
Sbjct: 700 G--VWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRD 757

Query: 460 EMKRTGIHKEPGCSWVEIRDQTYAFYAGN--ALFERGSEVLSLLRELERKMKER-GYVGG 516
            M+R G+ K+ GCSWVEI  + + FY G       +  ++  +LR++E +++E+ GY   
Sbjct: 758 AMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQAGDIRRVLRDVETRVREQLGYCAD 817

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI---------TIRIMKNLRMCRD 567
                  DV++E+R E +  HSERLA+  GL  +  G+          IR+ KNLR+C D
Sbjct: 818 DVQFALHDVDEESRAESLRAHSERLAV--GLWLLRNGVDGGGGGHRQPIRVYKNLRVCGD 875

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH+ FK +S +V R  VVRD NRFH F +G+CSC D+W
Sbjct: 876 CHEFFKGLSAVVRRALVVRDANRFHRFEHGTCSCKDYW 913



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 191/377 (50%), Gaps = 15/377 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  + K GF S+T   N+LI+ Y +  +  +A ++F  M + NVVS+T+LM G++  G 
Sbjct: 239 LHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGD 298

Query: 109 PQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               L L  +M   +   PNE+T +  +KAC +  D+  G  IH      G++ + VV S
Sbjct: 299 ATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVAS 358

Query: 168 SLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREF-----N 221
           SLV +Y K   +  ARRVFD  G  R + +W ++I  +A    G +AL +FRE       
Sbjct: 359 SLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRR 418

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCG 279
           ++ + +P++   AS++ AC  LG    G   H  +  SG     N ++A ALVDMY KCG
Sbjct: 419 HEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCG 478

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            +  + +VF R+   + + +T+++VG A+ G    +L+LF      G + +      ++ 
Sbjct: 479 RLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVG 538

Query: 340 ACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
             +   LV++G Q H   +    G   D      +VDM  + G  DEA ++ + I   P 
Sbjct: 539 VLADFALVEQGRQVHCYGVKSPAGT--DVSAGNSIVDMYLKCGLPDEAERMFREI---PA 593

Query: 399 GGPLLWGTLLSASRLHG 415
              + W T+++    HG
Sbjct: 594 RNVVSWTTMINGLGKHG 610



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 166/337 (49%), Gaps = 15/337 (4%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            A +++A +  + L  G Q+H  +   GF  + ++ ++L+DMY KC ++D A  VF  M 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT+++V   Q+      L +  E    S   PN++ L++ + AC     + +G 
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKY 309
             HG+ VR+G E + VVAS+LV +Y+K G +  + +VF+       + T+ +MI G A  
Sbjct: 340 GIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHA 399

Query: 310 GLGRFSLDLFNEMISRGI------KPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG 362
           G GR +L +F EM  R        +P++ TF  +L AC   G   EG Q H       + 
Sbjct: 400 GHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFS 459

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
              +A     +VDM  + GRL  A ++ + ++       + W T++      G+V  A+E
Sbjct: 460 TASNAILAGALVDMYVKCGRLPVAMQVFERLERK---NAIQWTTVVVGHAQEGQVMEALE 516

Query: 423 ASNQLIES----NQQVANAYVTLSNTYALAGEWENVH 455
              +   S    +  V ++ V +   +AL  +   VH
Sbjct: 517 LFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVH 553



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
           F + +     + M+A ++ A A    L  G   HG + + G   + ++ + L+DMYAKCG
Sbjct: 207 FPFPTNPMERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCG 266

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVL 338
            ++ + +VF  + + +VV++T+++VG  ++G     L L  EM  +    PN+ T    L
Sbjct: 267 ELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASL 326

Query: 339 HAC 341
            AC
Sbjct: 327 KAC 329



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ 79
           R   R+  H  +  +  L +   +     VH   +KS   ++    N +++ Y++     
Sbjct: 523 RSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPD 582

Query: 80  VARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
            A ++F E+   NVVS+T+++ G    G  + A+ +F++M    V P+E T+  ++ ACS
Sbjct: 583 EAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACS 642

Query: 140 MLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
               +   ++  + I    T   +     C  +VD+ G+  ++  AR +   M     V 
Sbjct: 643 HAGLVDECRRYFSCIRRDRTVRPKAEHYAC--MVDLLGRAGELREARDLIRTMPMEPTVG 700

Query: 197 -WTSIIVA---HAQNAQGHEA 213
            W +++ A   H   A G EA
Sbjct: 701 VWQTLLSACRVHKDVAVGREA 721


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/593 (34%), Positives = 336/593 (56%), Gaps = 39/593 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+EI+ +GF ++      LIN Y +   +  AR++FD+M + ++VS+  ++  Y+  G 
Sbjct: 229 IHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGD 288

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L+QK+        + TF +++ ACS +  L  G+ +H+HI   G    + V ++
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA--------------- 213
           LV+MY KC  ++ AR+VF+ M  R+ V+W+++I A+A N  G +A               
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 214 -------------------LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
                              +++FRE    +  +P+     +V+ ACASLGRL   K  H 
Sbjct: 409 ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            +  S  E N VV + L++MYA+CGS+  ++++F      +VV++T+M+   ++YG    
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +LDLF EM   G+KP+DVT+  +L  C+H G +++G ++   M   + + P A H+  +V
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMV 588

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+LGR+GRL +A +L +S+  +PD  P+ W T L+A R+HG++++   A+ ++ E +   
Sbjct: 589 DLLGRSGRLFDAKELLESMPFEPD--PVAWMTFLTACRIHGKLELGEAAAERVYELDPSS 646

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
              Y+ +SN YA  G WE V S+R +M+  G+ K PG S++E+  + + F +G     R 
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISI-PKG 553
            E+   L  L   M+  GYV   T  V  DV +  +E ++  HSE++A+AFGL+S    G
Sbjct: 707 DEICEELTRLHGLMRAAGYV-PDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSG 765

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF-RNGSCSCGDFW 605
             IR++KNLR+C DCH   K I+ I  RD +VRD NRFH F  +G CSCGD+W
Sbjct: 766 EPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 206/425 (48%), Gaps = 41/425 (9%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F+  L  C  L     +H+ +  SG  S     N L+  Y R      A+++F  +   +
Sbjct: 113 FVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
             S+ +++  +   G    AL +F++M  + V PN  T+  VI   S    L  G++IH 
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF  +LVV ++L++MYGKC     AR VFD M  R++VSW  +I  +  N   HE
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE 291

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           ALE++++ + +   R  +    S++ AC+S+  L  G++ H  ++  G +    VA+ALV
Sbjct: 292 ALELYQKLDMEGFKR-TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALV 350

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR------------------- 313
           +MYAKCGS+  + KVFN + N   V ++++I   A  G G+                   
Sbjct: 351 NMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTIS 410

Query: 314 ---------------FSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
                           ++ +F EM  + G+KP+ VTF+ VL AC+  G + E ++ L + 
Sbjct: 411 WNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQ 469

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             +  +  +      +++M  R G L+EA +L  + +   +   + W  +++A   +GR 
Sbjct: 470 ISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK---EKTVVSWTAMVAAFSQYGRY 526

Query: 418 DIAVE 422
             A++
Sbjct: 527 AEALD 531



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 195/378 (51%), Gaps = 11/378 (2%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYT 97
           C  ++   ++H  I  S F  +T   N LI+ Y +      AR +F+ M   + NVVS+ 
Sbjct: 20  CGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           +++A Y   G    AL+L+ +M    +  +  TF +V+ ACS LA    G++IH  +   
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYS 136

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G      + ++LV MY +   V  A+R+F  +  R+  SW ++I+AH+Q+     AL +F
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +E       +PN     +VI+  ++   L  G+  H  +V +G + + VVA+AL++MY K
Sbjct: 197 KEMKCDV--KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGK 254

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CGS + + +VF+++    +V++  MI      G    +L+L+ ++   G K    TFV +
Sbjct: 255 CGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSI 314

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L ACS    + +G + + S   + G+  +    T +V+M  + G L+EA K+  +++   
Sbjct: 315 LGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK--- 370

Query: 398 DGGPLLWGTLLSASRLHG 415
           +   + W TL+ A   +G
Sbjct: 371 NRDAVAWSTLIGAYASNG 388



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 164/319 (51%), Gaps = 12/319 (3%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+  TF TV+ +CS   D++ G+ +H  I    F+ + +V ++L+ MYGKC+ +  AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 186 FDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           F+ M    RNVVSW ++I A+AQN    EAL ++   N Q     +     SV+ AC+SL
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLG-TDHVTFVSVLGACSSL 123

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
            +   G+  H  V  SG +    +A+ALV MYA+ GSV  + ++F  +      ++ ++I
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
           +  ++ G    +L +F EM    +KPN  T++ V+   S   ++ EG + + +     G 
Sbjct: 181 LAHSQSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEG-RKIHAEIVANGF 238

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
             D    T +++M G+ G   EA ++   ++       + W  ++    L+G    A+E 
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMK---KRDMVSWNVMIGCYVLNGDFHEALEL 295

Query: 424 SNQL-IESNQQVANAYVTL 441
             +L +E  ++    +V++
Sbjct: 296 YQKLDMEGFKRTKATFVSI 314



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 8/200 (4%)

Query: 33  FIQQLQECKHLISLASV---HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L+ C  L  L+ V   H++I +S   SN    N LIN Y R    + A +LF    
Sbjct: 447 FIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E  VVS+T+++A +   G+   AL LFQ+M    V P++ T+ +++  C+    L  G +
Sbjct: 507 EKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWR 566

Query: 150 IHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---H 204
             T + E           +++VD+ G+   +  A+ + + M    + V+W + + A   H
Sbjct: 567 YFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIH 626

Query: 205 AQNAQGHEALEMFREFNYQS 224
            +   G  A E   E +  S
Sbjct: 627 GKLELGEAAAERVYELDPSS 646



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+     +V+ +C+S G +V G+  H  +  S  E + +V +AL+ MY KC S+  +  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 287 VFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-- 342
           VF  +     +VV++ +MI   A+ G    +L L+  M  +G+  + VTFV VL ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 343 ------HSGLVDEGIQHLDS-------MYRKYGIIPDAK 368
                 H+ +   G+    S       MY ++G + DAK
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAK 162


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 332/604 (54%), Gaps = 39/604 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKTQV---ARQLFDEMLEPN 92
           L+ C  L  L  +H+ ++++  + + F  + LI  C      T +   A ++F ++  PN
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +  + +++ G+     P  A   + +     + P+  TF  ++K+C+ L  +  G Q H 
Sbjct: 84  LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143

Query: 153 HIETFGFQYNLVVCSSLVDMYG-------------------------------KCNDVDG 181
           HI   GF+ ++ V +SLV MY                                KC DV+ 
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVES 203

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR++FD M  +N+V+W+++I  +AQN    +A+E+F+    Q   R N+ ++ SVI++CA
Sbjct: 204 ARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGV-RANETVMVSVISSCA 262

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            LG L  G+ AH  VV++G   N ++ +ALVDMYA+CGS++ +  VF  +     +++T+
Sbjct: 263 HLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTA 322

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           +I G A +G    SL  F  M+  G+ P D+TF  VL ACSH GLV+ G Q  +SM R +
Sbjct: 323 LIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDH 382

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            + P  +HY C+VD+LGR G+L+EA +    + V P+    +WG LL A R+H   +I  
Sbjct: 383 RVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAP--VWGALLGACRIHKNAEIGE 440

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
                LI+   Q +  YV LSN YA A EWE V  +R  MK  G+ K PG S +E+  + 
Sbjct: 441 RVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRV 500

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F  G++      ++  +  E+  +++  GY G     +F D+++E +E  +  HSE+L
Sbjct: 501 HKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALF-DIDEEEKESALHRHSEKL 559

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFG++    G  IRI+KNLR+C DCH   KLIS +  R+ +VRD NRFHHFR G CSC
Sbjct: 560 AIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSC 619

Query: 602 GDFW 605
            D+W
Sbjct: 620 MDYW 623


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/552 (37%), Positives = 322/552 (58%), Gaps = 4/552 (0%)

Query: 54  LKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
           LK GF    + L  LI+ Y +      AR LF  +  P++++Y ++++G+   G  + ++
Sbjct: 236 LKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSV 295

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
            LF+++L +    +  T   +I   S    L     IH      G   N  V ++   +Y
Sbjct: 296 KLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIY 355

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            K N++D AR +FD    + VV+W ++I  + QN     A+ +F+E   ++   PN   +
Sbjct: 356 NKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEM-MKTEFTPNAVTI 414

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            ++++ACA LG L  GK  H ++     E N  V++ALVDMYAKCG+++ + ++F+ +S 
Sbjct: 415 TTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSE 474

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
            + VT+ +MI G   +G G  +L L+NEM+  G  P+ VTF+ VL+ACSH+GLV EG + 
Sbjct: 475 KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEI 534

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
             +M  KY I P  +HY C+VD+LGR+G+L++A +  K + V+P  GP +WGTLL A  +
Sbjct: 535 FHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEP--GPAVWGTLLGACMI 592

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           H   DIA  AS +L E +      YV LSN Y++   +    S+R  +K+  + K PGC+
Sbjct: 593 HKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCT 652

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
            +E+    + F +G+      +++ + L +L  KM+E GY   +T     DVE+E +E  
Sbjct: 653 LIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGY-QAETVPALHDVEEEEKELA 711

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           V +HSE+LA+AFGLI+   G  IRI+KNLR+C DCH   K IS I ER  VVRD NRFHH
Sbjct: 712 VNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHH 771

Query: 594 FRNGSCSCGDFW 605
           F++G CSCGD+W
Sbjct: 772 FKDGICSCGDYW 783



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 201/421 (47%), Gaps = 18/421 (4%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           KHL+ L   H+  +  G+ SN F  + L++ Y +  +   AR++FD M E + V + +++
Sbjct: 125 KHLMLL---HAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMI 181

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
            G +       ++ LF++M+ + V  +  T   V+ A + L +L  G  I       GF 
Sbjct: 182 NGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFG 241

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
           +   V + L+ +Y KC DV+ AR +F  +   +++++ ++I     N     ++++FRE 
Sbjct: 242 FCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFREL 301

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            + S +R +   +  +I   +  G L      HG  V+SG   N  V++A   +Y K   
Sbjct: 302 LF-SGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNE 360

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ +  +F+     +VV + +MI G  + G    ++ LF EM+     PN VT   +L A
Sbjct: 361 IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSA 420

Query: 341 CSHSGLVDEG--IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
           C+  G +  G  + HL    +   + P+    T +VDM  + G + EA++L  S+    +
Sbjct: 421 CAQLGSLSFGKWVHHL---IKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS---E 474

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA-----LAGEWEN 453
              + W T++    LHG    A++  N+++       +A   LS  YA     L GE E 
Sbjct: 475 KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN-PSAVTFLSVLYACSHAGLVGEGEE 533

Query: 454 V 454
           +
Sbjct: 534 I 534



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 200/430 (46%), Gaps = 18/430 (4%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           LA  H++ + +G+  +  TL  L         T+ AR LF  + +P++  +  L+ G+  
Sbjct: 28  LAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSL 87

Query: 106 MGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
              P  ++ L+  +  N  + P+ FT+A  + ACS    L+    +H H    G+  N+ 
Sbjct: 88  NDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVF 144

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V S+LVD+Y K + V  AR+VFD M  R+ V W ++I    +N    +++++FRE     
Sbjct: 145 VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREM-VAD 203

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             R +   + +V+ A A L  L  G     + ++ G  F D V + L+ +Y+KCG VN +
Sbjct: 204 GVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA 263

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             +F RI+ P ++ Y +MI G    G    S+ LF E++  G + +  T VG++   S  
Sbjct: 264 RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPF 323

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G +      +     K GII +    T    +  +   +D A  L       P+   + W
Sbjct: 324 GHLHLACS-IHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHL---FDESPEKTVVAW 379

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA-------GEWENVHSL 457
             ++S    +G  + A+    +++++ +   NA    +   A A       G+W + H +
Sbjct: 380 NAMISGYTQNGSTETAISLFKEMMKT-EFTPNAVTITTILSACAQLGSLSFGKWVH-HLI 437

Query: 458 RSEMKRTGIH 467
           +SE     I+
Sbjct: 438 KSENLEPNIY 447



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 11/278 (3%)

Query: 5   LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFT 64
           L R L+F+          +R S  T    I       HL    S+H   +KSG + N   
Sbjct: 297 LFRELLFS---------GERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTV 347

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124
                  Y +L +  +AR LFDE  E  VV++ ++++GY   G  + A+ LF++M+    
Sbjct: 348 STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEF 407

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            PN  T  T++ AC+ L  L  GK +H  I++   + N+ V ++LVDMY KC ++  A +
Sbjct: 408 TPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQ 467

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +FD M  +N V+W ++I  +  +  GHEAL+++ E  +   + P+     SV+ AC+  G
Sbjct: 468 LFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN-PSAVTFLSVLYACSHAG 526

Query: 245 RLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            +  G ++ H +V +   E      + +VD+  + G +
Sbjct: 527 LVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQL 564


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 318/545 (58%), Gaps = 4/545 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N LI   ++      AR+LFD+M   NV ++ +++AG  N+G  + +L  F  M 
Sbjct: 107 NVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMR 166

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+EF   +V + C+ L D+++G+Q+H ++   G   ++ V +SL  MY +C  + 
Sbjct: 167 REGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLA 226

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
               V   +    +VS+ + I    QN     ALE F          P+     S I+ C
Sbjct: 227 EGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMR-GVEVAPDVVTFVSAISCC 285

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           + L  L  G+  H  V+++G +    V ++LV MY++CG +  S++V++      +   +
Sbjct: 286 SDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLS 345

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +MI     +G G  +++LF +M++ G +PN+VTF+ +L+ACSHSGL DEG++  + M + 
Sbjct: 346 AMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKT 405

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           YG  P  KHY C+VD+LGR+G LDEA  L  S+ V  DG  ++W TLLSA +     D+A
Sbjct: 406 YGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADG--VIWKTLLSACKTQKNFDMA 463

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
              + ++IES+ + +  YV LSN  A +  W +V  +R  M+   I KEPG SWVE + Q
Sbjct: 464 ERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQ 523

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F  G+    R  E+   L+E+  K+++ GY    T +VF D+EDE +E  +  HSE+
Sbjct: 524 VHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMT-MVFHDMEDEEKEVSLTHHSEK 582

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AF  +++P+G+ IR+MKNLR+C DCH   KLIS +  R+ VVRDV+RFHHFR+G CS
Sbjct: 583 LAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCS 642

Query: 601 CGDFW 605
           CGD+W
Sbjct: 643 CGDYW 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 168/397 (42%), Gaps = 61/397 (15%)

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
            ++W +   F+ + +AC  +  L   +Q+H    T G   +    ++L+  Y    D+  
Sbjct: 39  GVLWSDASLFSHIFRACRAIPLL---RQLHAFAATSGAAADRFTTNNLLLAYADLGDLPT 95

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---------------------- 219
           AR +F+ +  RNV+SW  +I    +N     A E+F +                      
Sbjct: 96  ARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLD 155

Query: 220 ------FNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
                 F    R+   P++  L SV   CA L  +VSG+  H  VVRSG + +  V ++L
Sbjct: 156 EDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSL 215

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
             MY +CG +   + V   + + ++V++ + I G  + G    +L+ F+ M    + P+ 
Sbjct: 216 AHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDV 275

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTFV  +  CS    + +G Q + +   K G+       T +V M  R G L ++ ++  
Sbjct: 276 VTFVSAISCCSDLAALAQG-QQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVY- 333

Query: 392 SIQVDPDG----GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
                 DG       L   ++SA   HG+   AVE   Q++    +  N    L+  YA 
Sbjct: 334 ------DGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE-PNEVTFLALLYAC 386

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
           +               +G+ K+ G  + E+  +TY F
Sbjct: 387 S--------------HSGL-KDEGLEFFELMTKTYGF 408



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           ++S   VH+ +++SG  S+    N L + Y+R         +   +    +VS+ + +AG
Sbjct: 190 VVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAG 249

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
               G  + AL  F  M G  V P+  TF + I  CS LA L  G+Q+H  +   G    
Sbjct: 250 RTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKV 309

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V +SLV MY +C  +  + RV+D     ++   +++I A   + QGH+A+E+F++   
Sbjct: 310 VPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQM-M 368

Query: 223 QSRDRPNQHMLASVINACASLG 244
                PN+    +++ AC+  G
Sbjct: 369 NGGAEPNEVTFLALLYACSHSG 390


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/617 (34%), Positives = 343/617 (55%), Gaps = 61/617 (9%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+SLA  + ++       +  + N ++  YVR  + Q AR+LFD   E + +S+ +LMAG
Sbjct: 215 LVSLARHYFDLAPE---KDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAG 271

Query: 103 YINMGQPQIALLLFQKML-----------------GNL--------VWP--NEFTFATVI 135
           Y+   Q + A  +F KM                  G++        V P  + FT+  ++
Sbjct: 272 YVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIV 331

Query: 136 KACS-------------------------MLADLITGKQIHTHIETFGFQ--YNLVVCSS 168
              +                         M+A  +  + +    E F      N+   ++
Sbjct: 332 SGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNT 391

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++  Y +   +D AR +F +M  ++ VSW +++ A++Q     E L++F+E   +  +  
Sbjct: 392 MLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMG-RCGEWV 450

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+   A V++ CA +  L  G   H  ++++G      V +AL+ MY KCGS+  +   F
Sbjct: 451 NRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAF 510

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VV++ +MI G A++G G+ +L++F+ M     KP+D+T VGVL ACSHSGLV+
Sbjct: 511 EEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVE 570

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +GI +  SM+R +G+    +HYTC++D+LGR GRLDEA  L K +  +PD    +WG LL
Sbjct: 571 KGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDS--TMWGALL 628

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ ++ E   + A  YV LSN YA +G+W +V  +R  M   G+ K
Sbjct: 629 GASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKK 688

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SW+E++++ + F  G+++     ++ + L +L+ +MK+ GYV   T +V  DVE+E
Sbjct: 689 VPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSA-TDMVLHDVEEE 747

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+A+G++ IP G  IR++KNLR+CRDCH  FK IS I  R  ++RD 
Sbjct: 748 EKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDS 807

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHFR+GSCSCGD+W
Sbjct: 808 NRFHHFRDGSCSCGDYW 824



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 172/391 (43%), Gaps = 26/391 (6%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           SLA V + +     + ++ + N +I+ +       +AR  FD   E + VS+  ++A Y+
Sbjct: 184 SLADVRA-LFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 242

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG--FQYN 162
             G+ Q A  LF          +  T    I   +++A  +   QI    + F    Q +
Sbjct: 243 RNGRIQEARELF----------DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRD 292

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           +V  +++V  Y +  D+  ARR+FD+   R+V +WT+I+  +AQN    EA  +F     
Sbjct: 293 VVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD 352

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           ++    N  M A V        +    ++   +  R+   +N ++       YA+ G ++
Sbjct: 353 KNAVSWNAMMAAYVQRRMMEEAK----ELFDAMPCRNVASWNTMLTG-----YAQAGMLD 403

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +  +F  +     V++ +M+   ++ G    +L LF EM   G   N   F  VL  C+
Sbjct: 404 EARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCA 463

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
               ++ G+Q L S   K G          ++ M  + G ++EA+   + ++   +   +
Sbjct: 464 DIAALECGMQ-LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME---ERDVV 519

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
            W T+++    HG    A+E  + + +++ +
Sbjct: 520 SWNTMIAGYARHGFGKEALEVFDTMRKTSTK 550



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 164/401 (40%), Gaps = 65/401 (16%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N  I  ++R  +   A +LF  M   +  +Y +++AGY   G+   AL  F+    ++  
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR----SIPR 166

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+ F++ T++ A  + + L   + +   +       YN+++ S     +     V  AR 
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISS-----HANHGLVSLARH 221

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
            FDL   ++ VSW  ++ A+ +N +  EA E+F                           
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF--------------------------- 254

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
                         S  E++ +  +AL+  Y +   +  + K+FN++    VV++ +M+ 
Sbjct: 255 -------------DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVS 301

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A+ G    +  LF+    R +     T+  ++   + +G+++E  +  D+M  K  + 
Sbjct: 302 GYARRGDMAEARRLFDVAPIRDV----FTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS 357

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +A     V   +     ++EA +L  ++   P      W T+L+     G +D   EA 
Sbjct: 358 WNAMMAAYVQRRM-----MEEAKELFDAM---PCRNVASWNTMLTGYAQAGMLD---EAR 406

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
                  Q+ A ++  +   Y+  G  E    L  EM R G
Sbjct: 407 AIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCG 447



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 13/224 (5%)

Query: 30  KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++ F   L  C  + +L     +HS ++K+G+    F  N L+  Y +    + A   F+
Sbjct: 452 RSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFE 511

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           EM E +VVS+ +++AGY   G  + AL +F  M      P++ T   V+ ACS    +  
Sbjct: 512 EMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEK 571

Query: 147 G-KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF-DLMGCRNVVSWTSIIVA- 203
           G    ++    FG        + ++D+ G+   +D A  +  D+    +   W +++ A 
Sbjct: 572 GISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGAS 631

Query: 204 --HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             H  +  G  A E   E   +     N  M   + N  AS G+
Sbjct: 632 RIHRNSELGRNAAEKIFELEPE-----NAGMYVLLSNIYASSGK 670


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/574 (35%), Positives = 339/574 (59%), Gaps = 5/574 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I  +  C  +    ++H  ++KS   ++ F  + L++ YV L  T+ A +LFDE+ + +
Sbjct: 44  LITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKD 103

Query: 93  VVSYTSLMAGYINMGQPQIAL-LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +VS+ SL++G+       I L LLF+      + PNE T   V+ AC+ + +L  GK IH
Sbjct: 104 LVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIH 163

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                 G    + V +SL+++YGKC  ++ A  +F+ M  +++VSW S++  H       
Sbjct: 164 GIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAE 223

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           + +  F     ++    +Q  + S++ AC +LG     +  HG ++  G + N  +A+AL
Sbjct: 224 KGIGYFIMMR-RAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATAL 282

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +D+YAK G+++ S KVF  + NP  V +T+M+   A +G GR +++ F  M+  G+ P+ 
Sbjct: 283 LDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDH 342

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTF  +L ACSHSGLV+EG  +   MY  YG+    +HY+C+VD+LGR+G L++AYKL K
Sbjct: 343 VTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIK 402

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           S+ ++P+ G  +WG L+ A R+ G +++  E + +L   +   +  Y+TLSN Y+ AG+W
Sbjct: 403 SMPMEPNSG--VWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQW 460

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
            +   +R+ MK   + + PGCS++E  ++ + F  G+       ++ + L EL RK +E 
Sbjct: 461 RDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREV 520

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           G+   KT  V  DV++E +E+++  HSE+LA+AFGL+    G+ + I KN+R+C DCH  
Sbjct: 521 GF-ASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGF 579

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KLIS I +R  ++RD  RFHHF NG CSCGD+W
Sbjct: 580 AKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/626 (35%), Positives = 345/626 (55%), Gaps = 77/626 (12%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML-EPNVVSYTSLMAGYINMG 107
           +H++IL++   S +  L+ +++ Y  L     +  +F+ +   P  +++ S++  Y + G
Sbjct: 27  LHAQILRTSLPSPSL-LSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHG 85

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               +L  F +ML +  +P+   F +V+K+C+++ DL  G+ +H  I   G  ++L  C+
Sbjct: 86  LFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCN 145

Query: 168 SLVDMY------------------GKCNDV-----------DGARRVFDLMGCRNVVSWT 198
           +L++MY                  GK +DV              R+VF++M  R++VSW 
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWN 205

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQN    +AL M RE    +  RP+   L+SV+   A    L+ GK  HG  +R
Sbjct: 206 TVISGNAQNGMHEDALMMVREMG-NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR 264

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           +G + +  + S+L+DMYAKC  V+ S +VF  +     +++ S+I G  + G+    L  
Sbjct: 265 NGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKF 324

Query: 319 FNEMI------------------------------------SRGIKPNDVTFVGVLHACS 342
           F +M+                                      G+KPN V F+ VL ACS
Sbjct: 325 FQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACS 384

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLVDE  ++ +SM + Y IIP  +HY  V D+LGR GRL+EAY+    + ++P G   
Sbjct: 385 HAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGS-- 442

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W TLL+A R+H  +++A + S +L   + Q   AYV LSN Y+ AG W++   LR  M+
Sbjct: 443 VWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMR 502

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGN---ALFERGSEVLSLLRELERKMKERGYVGGKTG 519
             G+ K+P CSW+EI+++ +AF AG+     ++R +E L +L E   +M+  GYV   T 
Sbjct: 503 DKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLE---QMEREGYVLDTTE 559

Query: 520 LVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIV 579
            V  DVE+E +  ++  HSERLA+ FG+IS P G TIR+ KNLR+C DCH   K IS IV
Sbjct: 560 -VLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIV 618

Query: 580 ERDFVVRDVNRFHHFRNGSCSCGDFW 605
            R+ VVRD +RFHHF++G CSCGDFW
Sbjct: 619 GREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R    T +  +    E  +L+    +H   +++G+ ++ F  + LI+ Y +  +   + +
Sbjct: 233 RPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 292

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F  + + + +S+ S++AG +  G     L  FQ+ML   + PN  +F++++ AC+ L  
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352

Query: 144 LITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           L  GKQ+H + I   G + N V   +++        VD A + F+ M
Sbjct: 353 LHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSM 399


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/622 (34%), Positives = 354/622 (56%), Gaps = 52/622 (8%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            +  L  C  + +L     VH   +++G + + F  N L++ Y +  K   A ++F+ + 
Sbjct: 237 LVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK 296

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKM------LGNLVW------------------ 125
           + +VVS+ +++ GY  +G    AL LF+ M      L  + W                  
Sbjct: 297 KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALD 356

Query: 126 -----------PNEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYN-----LVVCS 167
                      PN  T A+++  C+ +  L+ GKQ H ++        +N     L+V +
Sbjct: 357 VFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLN 416

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQS 224
            L+DMY KC     AR +FD +  +  NVV+WT +I  +AQ+ + ++AL++F + F  ++
Sbjct: 417 GLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKT 476

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNY 283
             +PN   L+  + ACA LG L  G+  H   +R+  E   + V + L+DMY+K G ++ 
Sbjct: 477 SLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDA 536

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  VF+ +   +VV++TS++ G   +G G  +L LF++M   G   + +TF+ VL+ACSH
Sbjct: 537 ARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSH 596

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           SG+VD+G+ +   M + +GI P A+HY C+VD+LGR GRL+EA +L K++ ++P    ++
Sbjct: 597 SGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTA--VV 654

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W  LLSASR+H  +++   A+++L E   +   +Y  LSN YA A  W++V  +RS MK 
Sbjct: 655 WVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKH 714

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
           TGI K PGCSW++ +  T  F+ G+       ++ +LL +L +++K+ GYV  +T     
Sbjct: 715 TGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYV-PQTSFALH 773

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DV+DE + +++  HSE+LA+A+G+++   G  IRI KNLR+C DCH     IS I++ + 
Sbjct: 774 DVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEI 833

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           V+RD +RFHHF+ GSCSC  +W
Sbjct: 834 VLRDSSRFHHFKKGSCSCRSYW 855



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 178/345 (51%), Gaps = 19/345 (5%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I  L++CK LI+    H +I   GF   T   ++ +  Y+    +  A  L   ++  +
Sbjct: 33  LISLLRQCKTLINAKLAHQQIFVHGF---TEMFSYAVGAYIECGASAEAVSLLQRLIPSH 89

Query: 93  --VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQ 149
             V  + +L+   + +G     L  + +M   L W P+ +TF  V+KAC  +  L  G  
Sbjct: 90  STVFWWNALIRRSVKLGLLDDTLGFYCQM-QRLGWLPDHYTFPFVLKACGEIPSLRHGAS 148

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR---NVVSWTSIIVAHAQ 206
           +H  +   G   N+ +C+S+V MYG+C  +D A ++FD +  R   ++VSW SI+ A+ Q
Sbjct: 149 VHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQ 208

Query: 207 NAQGHEALEM-FREFN-YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
             Q   AL + FR  N Y  + RP+   L +++ ACAS+  L  GK  HG  VR+G   +
Sbjct: 209 GGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDD 268

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
             V +ALV MYAKC  +N ++KVF  I    VV++ +M+ G ++ G    +L LF  M  
Sbjct: 269 VFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQE 328

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK---YGIIPD 366
             IK + +T+  V+   +  G    G + LD ++R+   YG+ P+
Sbjct: 329 EDIKLDVITWSAVIAGYAQKG---HGFEALD-VFRQMQLYGLEPN 369


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 325/558 (58%), Gaps = 6/558 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +L  G  ++   L   ++ Y ++   + AR +F +M   N+VS+ ++++G +  G 
Sbjct: 253 MHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGL 312

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              +  LF +++ +    +  T  ++++ CS  A L TGK +H       F+ NL++ ++
Sbjct: 313 VGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHG-CAIRSFESNLILSTA 371

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +VD+Y KC  +  A  VF+ M  RNV++WT+++V  AQN    +AL +F +   +     
Sbjct: 372 IVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEG-IAA 430

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S++++CA LG L  G+  HG + R G  F+ V  +ALVDMYAKCG +N ++++F
Sbjct: 431 NSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIF 490

Query: 289 NRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           +  S +  VV + SMI G   +G G  ++ ++++MI  G+KPN  TF+ +L ACSHS LV
Sbjct: 491 SHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLV 550

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++GI   +SM R + I P  KHY C+VD+L R GR +EA  L + +   P  G  +   L
Sbjct: 551 EQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQP--GTAVLEAL 608

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           LS  R H  +++ ++ S++L+  +      Y+ LSN YA A  W+ V  +R  M+  G+ 
Sbjct: 609 LSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLK 668

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K PG S VE  +  + F+AG+       E+   L  L   ++  GYV   T  V  DV++
Sbjct: 669 KTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVP-DTSCVLRDVDE 727

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +  ++  HSERLA+AFGL++ P G  IRI KNLR+C DCH V K IS IV+R+ +VRD
Sbjct: 728 EMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRD 787

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFHHF NG CSCGD+W
Sbjct: 788 ANRFHHFSNGECSCGDYW 805



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 138/461 (29%), Positives = 245/461 (53%), Gaps = 16/461 (3%)

Query: 51  SEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
           S  ++ G   N F  + +I+  V+  K   A+++FD M   +VV + S++ GY+  G   
Sbjct: 154 SSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFD 213

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
           +A  LF +M G+ + P+  T  ++I+AC  + +L  GK +H ++   G   +++V +S V
Sbjct: 214 VAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFV 273

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           DMY K  D++ AR VF  M  RN+VSW ++I    +N    E+ ++F     +S    + 
Sbjct: 274 DMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL-VRSSGGFDL 332

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             + S++  C+    L +GK+ HG  +RS  E N ++++A+VD+Y+KCGS+  +  VFNR
Sbjct: 333 TTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNR 391

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           + + +V+T+T+M+VG A+ G    +L LF +M   GI  N VTFV ++H+C+H G +  G
Sbjct: 392 MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG 451

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
                 ++R  G   D  + T +VDM  + G+++ A ++     +  D   +LW ++++ 
Sbjct: 452 RSIHGHLFR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKD--VVLWNSMITG 508

Query: 411 SRLHGRVDIAVEASNQLIESN-QQVANAYVTLSNTYALAGEWENVHSLRSEMKRT----G 465
             +HG    AV   +++IE   +     +++L +  + +   E   SL + M+R      
Sbjct: 509 YGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRP 568

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFER-----GSEVLSLL 501
           I K   C  V++  +   F    AL E+     G+ VL  L
Sbjct: 569 IEKHYAC-LVDLLSRAGRFEEAQALIEKMPFQPGTAVLEAL 608



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 206/437 (47%), Gaps = 8/437 (1%)

Query: 32  HFIQQLQEC-KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           +F+  L+E  K+LI + S H++I+ +   ++ F    L+  Y  L+  + AR +FD+  +
Sbjct: 33  NFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQ 92

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           P  +   +++ GY+  G+ +  L LF  M    +  +  +    +KAC+   D   G +I
Sbjct: 93  PKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEI 152

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
            +     G + N  V SS++    K   +  A+RVFD M  ++VV W SII  + Q    
Sbjct: 153 ISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCF 212

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
             A ++F E  + S  +P+   + S+I AC  +G L  GK  HG V+  G   + +V ++
Sbjct: 213 DVAFQLFFEM-HGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTS 271

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
            VDMY+K G +  +  VF ++   ++V++ +MI G  + GL   S DLF+ ++      +
Sbjct: 272 FVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFD 331

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T V +L  CS +  +  G        R +    +    T +VD+  + G L +A  + 
Sbjct: 332 LTTIVSLLQGCSQTASLATGKILHGCAIRSFE--SNLILSTAIVDLYSKCGSLKQATFVF 389

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYVTLSNTYALAG 449
             ++   D   + W  +L     +G  + A+    Q+ E      +  +V+L ++ A  G
Sbjct: 390 NRMK---DRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLG 446

Query: 450 EWENVHSLRSEMKRTGI 466
             +   S+   + R G 
Sbjct: 447 SLKRGRSIHGHLFRLGF 463



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE-M 88
           F+  +  C HL SL    S+H  + + GF  +   +  L++ Y +  K  +A ++F    
Sbjct: 435 FVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGS 494

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +  +VV + S++ GY   G    A+ ++ KM+   + PN+ TF +++ ACS
Sbjct: 495 ISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACS 545


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 302/508 (59%), Gaps = 4/508 (0%)

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           S++  Y +  +   ++ ++ +M  N ++P+  TF TV+K+ + L     GK IH  I   
Sbjct: 112 SMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQM 171

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           GF+ N+ V ++LV+MYG C+ V  AR+VFD +  RN+VSW ++I  +  N    + +++F
Sbjct: 172 GFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVF 231

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           RE       +P +  +  V+ ACA LG L  G+     +  +    N  V +AL+DMYAK
Sbjct: 232 REMQIAGA-KPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG V+ ++K+F  +   +V T+  +I G A  G G  +L  F+ MI    KP++VTF+GV
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGV 350

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L AC H GLV+EG  +  SM  ++G+ P  +HY C+VD+LGR G LDEA +L +++ + P
Sbjct: 351 LCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQP 410

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           D  P++W  LL A R+HG + +   A  +L+E        YV L+N YA    W+ V  +
Sbjct: 411 D--PIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R  M    + K PGCS +EI +  Y F   N +     EV  LL ++ +K+K  GYV   
Sbjct: 469 REMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYV-AD 527

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           TG+   D+E+E +E  +  HSE+LALAFGL+  P G+T+RI+KNLR+C+DCH  FK++S 
Sbjct: 528 TGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSK 587

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  RD  VRD NRFHHF  G+CSC D+W
Sbjct: 588 VYRRDISVRDRNRFHHFVGGACSCKDYW 615


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 328/558 (58%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  +LK+ F+ N F  N L++ Y +  +     +LF EM E + +SY  ++  Y   GQ
Sbjct: 263 VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQ 322

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  LF+K+        +F FAT++   +   +L  G+QIH    T G  +   V ++
Sbjct: 323 FKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENA 382

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KCN    A+++FD + C++ V WT++I A+ Q  +  E + +F +   ++    
Sbjct: 383 LVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMR-RTGVPA 441

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   AS++ ACA+L  +  G+  H +++RSG   N    SAL+D YAKCG +  + K F
Sbjct: 442 DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   + V++ ++I   A+ G    +L+ F +MI  G KP+ V+F+ VL ACSH G V+
Sbjct: 502 GEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVE 561

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E + H +SM + Y + P  +HYT +VD+L R GR DEA KL   +  +P    ++W ++L
Sbjct: 562 EALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEP--SEIMWSSVL 619

Query: 409 SASRLHGRVDIAVEASNQLIE-SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           ++ R+H   ++A +A+++L    + + A  Y+ +SN YA+AG+W+NV  ++  M+  G+ 
Sbjct: 620 NSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVR 679

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K P  SWVEI+ QT+ F A +       ++L  +  L ++M+++GY    T     DV++
Sbjct: 680 KVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGY-KPDTTCALHDVDE 738

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             + E +  HSER A+AF L++ P G  I +MKNLR C DCH   K+IS IVER+ +VRD
Sbjct: 739 VIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRD 798

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF++G CSCGD+W
Sbjct: 799 SSRFHHFKDGVCSCGDYW 816



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 204/392 (52%), Gaps = 7/392 (1%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E K++I    +H+ ++K G+  N    N L++ Y +     +A QLF  ML  + V++ S
Sbjct: 154 ETKNVI--VQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNS 211

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           LM GY N G  + A+ LF ++  + + P++FTFA ++ A   L D   G+Q+H  +    
Sbjct: 212 LMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTN 271

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F +N+ V ++L+D Y K + VD   ++F  M   + +S+  +I ++A N Q  E+ ++FR
Sbjct: 272 FVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFR 331

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +  +   DR  Q   A++++   S   L  G+  H   +  G  F   V +ALVDMYAKC
Sbjct: 332 KLQFTRFDR-RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKC 390

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
                + K+F+ I+  S V +T+MI    + G     +++F++M   G+  +  TF  +L
Sbjct: 391 NGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASIL 450

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC++   +  G Q L S+  + G + +    + ++D   + G + +A    KS    P+
Sbjct: 451 RACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDA---IKSFGEMPE 506

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
              + W  L+SA   +G VD  + +  Q+I+S
Sbjct: 507 RNSVSWNALISAYAQNGNVDGTLNSFQQMIQS 538



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 7/357 (1%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT +LN +I+ +++  K   AR+LFD M+E   VS+T L+ GY+   Q + A  L+  M 
Sbjct: 73  NTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+  T  T++     L       QIHTH+   G++YNL+VC+SLVD Y K + + 
Sbjct: 133 RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY 192

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            A ++F  M  ++ V++ S++  ++      EA+E+F E  + S  +P+    A++++A 
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL-HNSGIKPSDFTFAALLSAA 251

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             L     G+  HG V+++   +N  V +AL+D Y+K   V+   K+F  +     ++Y 
Sbjct: 252 VGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYN 311

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYR 359
            +I   A  G  + S DLF ++           F  +L   + S  +  G Q H  ++  
Sbjct: 312 VVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI-- 369

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
             G   +++    +VDM  +     EA K+  +I        + W  ++SA    G+
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACK---STVPWTAMISAYVQKGK 423


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 336/573 (58%), Gaps = 8/573 (1%)

Query: 33   FIQQLQECKH---LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            F   L  C +   LI    VH+ I+ +GF       N L+  Y +L     A+++   M 
Sbjct: 502  FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP 561

Query: 90   EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GK 148
            +P+ V++ +L+ G+    +P  A+  ++ +    +  N  T  +V+ ACS   DL+  G 
Sbjct: 562  QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGM 621

Query: 149  QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
             IH HI   GF+ +  V +SL+ MY KC D++ +  +FD +G ++ ++W +++ A+A + 
Sbjct: 622  PIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHG 681

Query: 209  QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
             G EAL++F E      +  +Q   +  + A A+L  L  G+  HG+V++ G E +  V 
Sbjct: 682  CGEEALKIFGEMRNVGVNL-DQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 740

Query: 269  SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
            +A +DMY KCG ++   K+  +  N S +++  +I   A++G  + + + F+EM+  G K
Sbjct: 741  NAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 800

Query: 329  PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            P+ VTFV +L AC+H GLVDEG+ + DSM R++G+ P  +H  C++D+LGR+GRL  A  
Sbjct: 801  PDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEG 860

Query: 389  LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
              K + V P+   L W +LL+A R+HG +++A + +  L+E +    +AYV  SN  A +
Sbjct: 861  FIKEMPVPPN--DLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATS 918

Query: 449  GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
            G+WE+V +LR EM    I K+P CSWV+++D+ ++F  G     + S + + L EL +  
Sbjct: 919  GKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMT 978

Query: 509  KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
            KE GYV   T     D+++E +E  +  HSERLALAFGLI+ P+  T+RI KNLR+C DC
Sbjct: 979  KEAGYV-PDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDC 1037

Query: 569  HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
            H V+K +S IV R  V+RD  RFHHF  G CSC
Sbjct: 1038 HSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K+G L + +    L++ Y  +     A++LF+EM + NVVS+TSLM GY + G 
Sbjct: 218 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 277

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P   L ++Q+M    V  N+ TFATV  +C +L D + G Q+  HI  +GF+ ++ V +S
Sbjct: 278 PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANS 337

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ M+   + V+ A  VFD M   +++SW ++I A+A +    E+L  F    +   +  
Sbjct: 338 LISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL-HNET 396

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L+S+++ C+S+  L  G+  HG+VV+ G + N  + + L+ +Y++ G    ++ VF
Sbjct: 397 NSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVF 456

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG-LV 347
             ++   ++++ SM+    + G     L +  E++  G   N VTF   L ACS+   L+
Sbjct: 457 QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLI 516

Query: 348 DEGIQH---LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           +  I H   + + +  + I+ +A     +V M G+ G + EA K+   +Q  P    + W
Sbjct: 517 ESKIVHALIIVAGFHDFLIVGNA-----LVTMYGKLGMMMEAKKV---LQTMPQPDRVTW 568

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
             L+     +   + AV+A  +LI      AN Y+T+
Sbjct: 569 NALIGGHAENEEPNEAVKAY-KLIREKGIPAN-YITM 603



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F  N LIN Y +    + AR +FDEM   N  S++++++GY+ +G  + A+ LF +M G 
Sbjct: 130 FQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL 189

Query: 123 LVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
            V PN F  A++I ACS    +AD   G Q+H  +   G   ++ V ++LV  YG    V
Sbjct: 190 GVEPNGFMVASLITACSRSGYMAD--EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 247

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             A+++F+ M   NVVSWTS++V ++ +    E L +++    Q     NQ+  A+V ++
Sbjct: 248 YNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR-QEGVSGNQNTFATVTSS 306

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C  L   V G    G +++ G E +  VA++L+ M++   SV  +  VF+ ++   ++++
Sbjct: 307 CGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 366

Query: 300 TSMIVGAAKYGLGRFSLDLFNEM 322
            +MI   A +GL R SL  F+ M
Sbjct: 367 NAMISAYAHHGLCRESLRCFHWM 389



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 179/368 (48%), Gaps = 14/368 (3%)

Query: 53  ILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           I++ GF  +    N LI+ +      + A  +FD M E +++S+ ++++ Y + G  + +
Sbjct: 323 IIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRES 382

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
           L  F  M       N  T ++++  CS + +L  G+ IH  +   G   N+ +C++L+ +
Sbjct: 383 LRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTL 442

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y +    + A  VF  M  R+++SW S++  + Q+ +  + L++  E   Q     N   
Sbjct: 443 YSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAEL-LQMGKVMNHVT 501

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNR 290
            AS + AC++   L+  K+ H +++ +G  F+D  +V +ALV MY K G +  + KV   
Sbjct: 502 FASALAACSNPECLIESKIVHALIIVAG--FHDFLIVGNALVTMYGKLGMMMEAKKVLQT 559

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +  P  VT+ ++I G A+      ++  +  +  +GI  N +T V VL ACS     D+ 
Sbjct: 560 MPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAP---DDL 616

Query: 351 IQHLDSMYRKY---GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++H   ++      G   D      ++ M  + G L+ +  +   +    +  P+ W  +
Sbjct: 617 LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG---NKSPITWNAM 673

Query: 408 LSASRLHG 415
           ++A+  HG
Sbjct: 674 VAANAHHG 681



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
           +K  S +   + GK +H           +   ++L++MY K  +++ AR VFD M  RN 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV-SGKVAH 253
            SW++++  + +     EA+ +F +  +     PN  M+AS+I AC+  G +   G   H
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVASLITACSRSGYMADEGFQVH 219

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
           G VV++G   +  V +ALV  Y   G V  + K+F  + + +VV++TS++VG +  G   
Sbjct: 220 GFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 279

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE---GIQHLDSMYRKYGIIPDAKHY 370
             L+++  M   G+  N  TF  V  +C   GL+++   G Q L  +  +YG        
Sbjct: 280 EVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHII-QYGFEDSVSVA 335

Query: 371 TCVVDMLGRTGRLDEA-YKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
             ++ M      ++EA Y      + D     + W  ++SA   HG
Sbjct: 336 NSLISMFSSFSSVEEACYVFDHMNECD----IISWNAMISAYAHHG 377


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 328/541 (60%), Gaps = 8/541 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + A++LFDE+   +VVS+ ++++GY   G  + AL LF++M+   + P+
Sbjct: 206 LIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPD 265

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+    +  G+Q+H+ I+  GF  NL + +SL+D+Y KC +++ A  +F+
Sbjct: 266 ESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFE 325

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +       EAL +F+E   +S +RPN   + S++ ACA LG + 
Sbjct: 326 GLLYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGERPNDVTMLSILPACAHLGAID 384

Query: 248 SGKVAHGVV---VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            G+  H  +   ++S    + +  S L+DMYAKCG +  + +VFN I + S+ ++ +MI 
Sbjct: 385 IGRWIHVYIDKRLKSATNASSLRTS-LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A +G    + D+F+ M   GI+P+D+TFVG+L ACS SG++D G     +M + Y I 
Sbjct: 444 GFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKIT 503

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P  +HY C++D+LG +G   EA ++  +++++PDG  ++W +LL A ++ G V++    +
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDG--VIWCSLLKACKIRGNVELGESFA 561

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
             LI+   +    YV LSN YA AG W  V  +R+ +   G+ K PGCS +EI    + F
Sbjct: 562 QNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEF 621

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
             G+    R  E+  +L E+E  +++ G+V   T  V  ++E+E +E  +  HSE+LA+A
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIA 680

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFHHFR+G CSC D+
Sbjct: 681 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740

Query: 605 W 605
           W
Sbjct: 741 W 741



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 209/421 (49%), Gaps = 39/421 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNV 93
           L  CK L SL  +H++++K+G  +  + L+ L+   V          A  +F+ + EPN+
Sbjct: 40  LHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNL 99

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + + ++  G+     P  AL L+  M+   + PN +TF  ++K+C+       G+QIH H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGH 159

Query: 154 IETFGFQYNLVVCSSLVDMY---GKCND----------------------------VDGA 182
           +   G+  +L V +SL+ +Y   G+  D                            ++ A
Sbjct: 160 VLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESA 219

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +++FD +  ++VVSW ++I  +A+     EALE+F+E   ++  RP++  + +V++ACA 
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM-MKTNIRPDESTMVTVVSACAQ 278

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            G +  G+  H  +   G   N  + ++L+D+Y+KCG +  +  +F  +    V+++ ++
Sbjct: 279 SGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTL 338

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G     L + +L LF EM+  G +PNDVT + +L AC+H G +D G   H+    R  
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
                +   T ++DM  + G ++ A+++  SI          W  ++    +HGR D A 
Sbjct: 399 SATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS---WNAMIFGFAMHGRADAAF 455

Query: 422 E 422
           +
Sbjct: 456 D 456


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 343/572 (59%), Gaps = 7/572 (1%)

Query: 37   LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
            L+ C  L +L     +H+ ++K+GF  N +  + LI+ Y +  +  +A ++   + E +V
Sbjct: 470  LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 94   VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            VS+T+++AGY+       AL LF++M    +  +   FA+ I AC+ +  L  G+QIH  
Sbjct: 530  VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 154  IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                GF  +L + ++L+ +Y +C  +  A   F+ +G +N +SW S++   AQ+    EA
Sbjct: 590  SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 214  LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
            L++F     ++    N     S I+A ASL  +  G+  H +V+++G +    V+++L+ 
Sbjct: 650  LQVFVRM-LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLIS 708

Query: 274  MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
            +YAK GS++ + + FN +S  +V+++ +MI G +++G G  +L LF EM   GI PN VT
Sbjct: 709  LYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVT 768

Query: 334  FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            FVGVL ACSH GLV EG+ + +SM++ + ++P ++HY CVVD+LGR G+LD A +  K +
Sbjct: 769  FVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEM 828

Query: 394  QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
             +  D   ++W TLLSA  +H  ++I   A++ L+E   + +  YV +SN YA++ +W +
Sbjct: 829  PIPADA--MIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIH 886

Query: 454  VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
                R  MK  G+ KEPG SW+E+++  +AFYAG+ L    +++   +  L R+  E GY
Sbjct: 887  RDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGY 946

Query: 514  VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
            V     L+  + E   ++ I  +HSE+LA+AFGL+S+   I IR+MKNLR+C DCH+  K
Sbjct: 947  VQDSFSLL-NESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIK 1005

Query: 574  LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             +S I  R  +VRD +RFHHF  G CSC DFW
Sbjct: 1006 YVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 202/387 (52%), Gaps = 7/387 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K GF S T+  N L+  Y R +K   A ++F  M   + VSY SL++G +  G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF KM  + + P+  T A+++ AC+ +  L  G Q+H+H    G   ++++  S
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGS 402

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC DV+ A + F      N+V W  ++VA+ Q     ++ E+FR+   +    P
Sbjct: 403 LLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM-IP 461

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ    S++  C SLG L  G+  H  V+++G + N  V S L+DMYAK G +  + ++ 
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+    VV++T+MI G  ++ +   +L LF EM  RGI+ +++ F   + AC+    + 
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H  S    +G   D      ++ +  R GR+ EAY   + I    D   + W +L
Sbjct: 582 QGQQIHAQSYAAGFG--ADLSINNALISLYARCGRIQEAYLAFEKI---GDKNNISWNSL 636

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQV 434
           +S     G  + A++   +++ +  +V
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEV 663



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 192/400 (48%), Gaps = 5/400 (1%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           + + R   +  C T A  +        L     +HS  +K+G  ++      L++ Y + 
Sbjct: 351 TKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC 410

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
              + A + F      N+V +  ++  Y  +     +  +F++M    + PN+FT+ +++
Sbjct: 411 ADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSIL 470

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           + C+ L  L  G+QIHTH+   GFQ N+ VCS L+DMY K   +  A R+   +   +VV
Sbjct: 471 RTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVV 530

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWT++I  + Q+    EAL++F E  Y+     N    AS I+ACA +  L  G+  H  
Sbjct: 531 SWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG-FASAISACAGIRALRQGQQIHAQ 589

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
              +G   +  + +AL+ +YA+CG +  +   F +I + + +++ S++ G A+ G    +
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L +F  M+    + N  T+   + A +    + +G Q + SM  K G   + +    ++ 
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSEREVSNSLIS 708

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +  ++G + +A++    +    +   + W  +++    HG
Sbjct: 709 LYAKSGSISDAWREFNDM---SERNVISWNAMITGYSQHG 745



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 187/376 (49%), Gaps = 9/376 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS     GF S+    N LI+ Y +    + A+++F+ +   ++V++ ++++G    G 
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+LLF  M  + ++P  +  ++V+ A + +     G+Q+H  +  +GF     VC+ 
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-- 226
           LV +Y +   +  A R+F  M  R+ VS+ S+I    Q      ALE+F +     RD  
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ---RDCL 358

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+   +AS+++ACAS+G L  G   H   +++G   + ++  +L+D+Y+KC  V  + K
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            F      ++V +  M+V   +      S ++F +M   G+ PN  T+  +L  C+  G 
Sbjct: 419 FFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G Q + +   K G   +    + ++DM  + G+L  A ++ + +   P+   + W  
Sbjct: 479 LYLGEQ-IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL---PEDDVVSWTA 534

Query: 407 LLSASRLHGRVDIAVE 422
           +++    H     A++
Sbjct: 535 MIAGYVQHDMFSEALQ 550



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 196/378 (51%), Gaps = 11/378 (2%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L     +H  I KSGF      ++ L++ Y R      A ++FDE    +V S+  ++  
Sbjct: 74  LFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHV 133

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG--KQIHTHIETFGFQ 160
           ++          LF++ML   + PN +TFA V+KAC +  D+     KQ+H+    +GF 
Sbjct: 134 FVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC-VGGDIAFNYVKQVHSRTFYYGFD 192

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            + +V + L+D+Y K   ++ A++VF+ +  +++V+W ++I   +QN    EA+ +F + 
Sbjct: 193 SSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM 252

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            + S   P  ++L+SV++A   +     G+  H +V++ G      V + LV +Y++   
Sbjct: 253 -HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRK 311

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  ++++F+ +++   V+Y S+I G  + G    +L+LF +M    +KP+ +T   +L A
Sbjct: 312 LISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSA 371

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+  G + +G+Q L S   K G+  D      ++D+  +   ++ A+K     + +    
Sbjct: 372 CASVGALHKGMQ-LHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETE---N 427

Query: 401 PLLWGTLLSASRLHGRVD 418
            +LW  +L A   +G++D
Sbjct: 428 IVLWNVMLVA---YGQLD 442



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 24/322 (7%)

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           +I L+ F +  G  V  N   +  +++ C     L    ++H  I   GF    ++  SL
Sbjct: 42  RIQLMNFMEERG--VRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           VD Y +  D  GA +VFD    R+V SW  +I          +   +FR    +    PN
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT-PN 158

Query: 230 QHMLASVINACASLGRLVSGKVA-------HGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            +  A V+ AC      V G +A       H      G + + +VA+ L+D+Y+K G + 
Sbjct: 159 GYTFAGVLKAC------VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + KVFN I    +VT+ +MI G ++ GL   ++ LF +M +  I P       VL A +
Sbjct: 213 SAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST 272

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--VVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
              L + G Q L  +  K+G    ++ Y C  +V +  R+ +L  A ++  ++    DG 
Sbjct: 273 KIQLFELGEQ-LHCLVIKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDG- 327

Query: 401 PLLWGTLLSASRLHGRVDIAVE 422
            + + +L+S     G  D A+E
Sbjct: 328 -VSYNSLISGLVQQGFSDRALE 348


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 328/565 (58%), Gaps = 18/565 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +K G + + F      + Y + +    AR+LFDE+ E N+ ++ + ++  +  G+
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 189

Query: 109 PQIAL---LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           P+ A+   + F+++ G+   PN  TF   + ACS    L  G Q+H  +   GF  ++ V
Sbjct: 190 PREAIEAFIEFRRIDGH---PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSV 246

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C+ L+D YGKC  +  +  +F  MG +N VSW S++ A+ QN +  +A  ++     +SR
Sbjct: 247 CNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLY----LRSR 302

Query: 226 D---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                 +  M++SV++ACA +  L  G+  H   V++  E    V SALVDMY KCG + 
Sbjct: 303 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 362

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI--KPNDVTFVGVLHA 340
            S++ F+ +   ++VT  S+I G A  G    +L LF EM  RG    PN +TFV +L A
Sbjct: 363 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 422

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CS +G V+ G++  DSM   YGI P A+HY+C+VDMLGR G ++ AY+  K + + P   
Sbjct: 423 CSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTIS 482

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +WG L +A R+HG+  + + A+  L + + + +  +V LSNT+A AG W   +++R E
Sbjct: 483 --VWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 540

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           +K  GI K  G SW+ +++Q +AF A +       E+ + L +L  +M+  GY      L
Sbjct: 541 LKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGY-KPDLKL 599

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
              D+E+E +   V  HSE+LALAFGL+S+P  + IRI KNLR+C DCH  FK +S  V+
Sbjct: 600 SLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVK 659

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ +VRD NRFH F++G CSC D+W
Sbjct: 660 REIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 200/428 (46%), Gaps = 12/428 (2%)

Query: 49  VHSEILKS-GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ I+K+       F  N+LIN Y +L   + AR +       NVVS+TSL++G    G
Sbjct: 28  VHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNG 87

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               AL+ F +M    V PN+FTF    KA + L   +TGKQIH      G   ++ V  
Sbjct: 88  HFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGC 147

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           S  DMY K    D AR++FD +  RN+ +W + I     + +  EA+E F EF  +    
Sbjct: 148 SAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFR-RIDGH 206

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN     + +NAC+    L  G   HG+V+RSG + +  V + L+D Y KC  +  S+ +
Sbjct: 207 PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEII 266

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +   + V++ S++    +      +  L+       ++ +D     VL AC+    +
Sbjct: 267 FTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G + + +   K  +       + +VDM G+ G ++++ +    +   P+   +   +L
Sbjct: 327 ELG-RSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEM---PEKNLVTRNSL 382

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVT---LSNTYALAGEWENVHSLRSEMKRT 464
           +      G+VD+A+    ++          Y+T   L +  + AG  EN   +   M+ T
Sbjct: 383 IGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRST 442

Query: 465 -GIHKEPG 471
            GI  EPG
Sbjct: 443 YGI--EPG 448



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 140/273 (51%), Gaps = 3/273 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F+    +  HL     +H  +L+SGF ++    N LI+ Y + K+ + +  +F EM   N
Sbjct: 215 FLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKN 274

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            VS+ SL+A Y+   + + A +L+ +   ++V  ++F  ++V+ AC+ +A L  G+ IH 
Sbjct: 275 AVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHA 334

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H      +  + V S+LVDMYGKC  ++ + + FD M  +N+V+  S+I  +A   Q   
Sbjct: 335 HAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDM 394

Query: 213 ALEMFREFNYQS-RDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASA 270
           AL +F E   +     PN     S+++AC+  G + +G K+   +    G E      S 
Sbjct: 395 ALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSC 454

Query: 271 LVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSM 302
           +VDM  + G V  + +   ++   P++  + ++
Sbjct: 455 IVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 326/557 (58%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   +K   +S++F    LI+ Y R +  + A  LF E    ++V++ ++MAGY     
Sbjct: 439 VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHD 497

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               L LF  M       ++FT ATV K C  L  +  GKQ+H +    G+  +L V S 
Sbjct: 498 GHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSG 557

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++DMY KC D+  A+  FD +   + V+WT++I    +N +   A  +F +        P
Sbjct: 558 ILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGV-LP 616

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++  +A++  A + L  L  G+  H   ++  C  +  V ++LVDMYAKCGS++ +  +F
Sbjct: 617 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF 676

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            RI   ++  + +M+VG A++G G+ +L LF +M S GIKP+ VTF+GVL ACSHSGLV 
Sbjct: 677 KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVS 736

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  +H+ SM+  YGI P+ +HY+C+ D LGR G + +A  L +S+ ++      ++ TLL
Sbjct: 737 EAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS--MYRTLL 794

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+ G  +     + +L+E     ++AYV LSN YA A +W+ +   R+ MK   + K
Sbjct: 795 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 854

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PG SW+E++++ + F   +    +   +   ++++ R +K+ GYV  +T    VDVE+E
Sbjct: 855 DPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYV-PETDFTLVDVEEE 913

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+AFGL+S P    IR++KNLR+C DCH+  K I+ +  R+ V+RD 
Sbjct: 914 EKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDA 973

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F++G CSCGD+W
Sbjct: 974 NRFHRFKDGICSCGDYW 990



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 194/389 (49%), Gaps = 12/389 (3%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L     + SLA    VH   LK G        N LIN Y +L+K   AR +FD M 
Sbjct: 318 FILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS 377

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-LITGK 148
           E +++S+ S++AG    G    A+ LF ++L   + P+++T  +V+KA S L + L   K
Sbjct: 378 ERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSK 437

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H H        +  V ++L+D Y +   +  A  +F+     ++V+W +++  + Q+ 
Sbjct: 438 QVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSH 496

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
            GH+ L++F   + Q  +R +   LA+V   C  L  +  GK  H   ++SG + +  V+
Sbjct: 497 DGHKTLKLFALMHKQG-ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           S ++DMY KCG ++ +   F+ I  P  V +T+MI G  + G    +  +F++M   G+ 
Sbjct: 556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL 615

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           P++ T   +  A S    +++G Q H +++  K     D    T +VDM  + G +D+AY
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHANAL--KLNCTNDPFVGTSLVDMYAKCGSIDDAY 673

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
            L K I++        W  +L     HG 
Sbjct: 674 CLFKRIEM---MNITAWNAMLVGLAQHGE 699



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 157/329 (47%), Gaps = 7/329 (2%)

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
           ++ Y++ GQ    L  F  M+ + V  ++ TF  ++     +  L  G+Q+H      G 
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
              L V +SL++MY K      AR VFD M  R+++SW S+I   AQN    EA+ +F +
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
              +   +P+Q+ + SV+ A +SL   +S  K  H   ++     +  V++AL+D Y++ 
Sbjct: 407 L-LRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRN 465

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
             +  ++ +F R  N  +V + +M+ G  +   G  +L LF  M  +G + +D T   V 
Sbjct: 466 RCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVF 524

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
             C     +++G Q + +   K G   D    + ++DM  + G +  A     SI V  D
Sbjct: 525 KTCGFLFAINQGKQ-VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 583

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQL 427
              + W T++S    +G  + A    +Q+
Sbjct: 584 ---VAWTTMISGCIENGEEERAFHVFSQM 609



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 6/198 (3%)

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           +DL+ GK  H  I TF       + ++L+ MY KC  +  ARRVFD M  R++VSW SI+
Sbjct: 53  SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 202 VAHAQNAQG-----HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
            A+AQ+++       +A  +FR    Q     ++  L+ ++  C   G + + +  HG  
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILR-QDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            + G + ++ VA ALV++Y K G V     +F  +    VV +  M+    + G    ++
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231

Query: 317 DLFNEMISRGIKPNDVTF 334
           DL +   S G+ PN++T 
Sbjct: 232 DLSSAFHSSGLNPNEITL 249



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            H+ IL        F +N+LI+ Y +      AR++FD+M + ++VS+ S++A Y    +
Sbjct: 61  THARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSE 120

Query: 109 -----PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
                 Q A LLF+ +  ++V+ +  T + ++K C     +   +  H +    G   + 
Sbjct: 121 CVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDE 180

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +LV++Y K   V   + +F+ M  R+VV W  ++ A+ +     EA+++   F + 
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF-HS 239

Query: 224 SRDRPNQ 230
           S   PN+
Sbjct: 240 SGLNPNE 246


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 328/565 (58%), Gaps = 18/565 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +K G + + F      + Y + +    AR+LFDE+ E N+ ++ + ++  +  G+
Sbjct: 80  IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 139

Query: 109 PQIAL---LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           P+ A+   + F+++ G+   PN  TF   + ACS    L  G Q+H  +   GF  ++ V
Sbjct: 140 PREAIEAFIEFRRIDGH---PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSV 196

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C+ L+D YGKC  +  +  +F  MG +N VSW S++ A+ QN +  +A  ++     +SR
Sbjct: 197 CNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLY----LRSR 252

Query: 226 D---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                 +  M++SV++ACA +  L  G+  H   V++  E    V SALVDMY KCG + 
Sbjct: 253 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 312

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI--KPNDVTFVGVLHA 340
            S++ F+ +   ++VT  S+I G A  G    +L LF EM  RG    PN +TFV +L A
Sbjct: 313 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 372

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CS +G V+ G++  DSM   YGI P A+HY+C+VDMLGR G ++ AY+  K + + P   
Sbjct: 373 CSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTIS 432

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +WG L +A R+HG+  + + A+  L + + + +  +V LSNT+A AG W   +++R E
Sbjct: 433 --VWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 490

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           +K  GI K  G SW+ +++Q +AF A +       E+ + L +L  +M+  GY      L
Sbjct: 491 LKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGY-KPDLKL 549

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
              D+E+E +   V  HSE+LALAFGL+S+P  + IRI KNLR+C DCH  FK +S  V+
Sbjct: 550 SLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVK 609

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ +VRD NRFH F++G CSC D+W
Sbjct: 610 REIIVRDNNRFHRFKDGICSCKDYW 634



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 187/404 (46%), Gaps = 11/404 (2%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +L   + AR +       NVVS+TSL++G    G    AL+ F +M    V PN+FTF
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 61

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
               KA + L   +TGKQIH      G   ++ V  S  DMY K    D AR++FD +  
Sbjct: 62  PCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPE 121

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           RN+ +W + I     + +  EA+E F EF  +    PN     + +NAC+    L  G  
Sbjct: 122 RNLETWNAFISNSVTDGRPREAIEAFIEFR-RIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            HG+V+RSG + +  V + L+D Y KC  +  S+ +F  +   + V++ S++    +   
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
              +  L+       ++ +D     VL AC+    ++ G + + +   K  +       +
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELG-RSIHAHAVKACVERTIFVGS 299

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            +VDM G+ G ++++ +    +   P+   +   +L+      G+VD+A+    ++    
Sbjct: 300 ALVDMYGKCGCIEDSEQAFDEM---PEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRG 356

Query: 432 QQVANAYVT---LSNTYALAGEWENVHSLRSEMKRT-GIHKEPG 471
                 Y+T   L +  + AG  EN   +   M+ T GI  EPG
Sbjct: 357 CGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGI--EPG 398



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 140/273 (51%), Gaps = 3/273 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F+    +  HL     +H  +L+SGF ++    N LI+ Y + K+ + +  +F EM   N
Sbjct: 165 FLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKN 224

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            VS+ SL+A Y+   + + A +L+ +   ++V  ++F  ++V+ AC+ +A L  G+ IH 
Sbjct: 225 AVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHA 284

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H      +  + V S+LVDMYGKC  ++ + + FD M  +N+V+  S+I  +A   Q   
Sbjct: 285 HAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDM 344

Query: 213 ALEMFREFNYQS-RDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASA 270
           AL +F E   +     PN     S+++AC+  G + +G K+   +    G E      S 
Sbjct: 345 ALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSC 404

Query: 271 LVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSM 302
           +VDM  + G V  + +   ++   P++  + ++
Sbjct: 405 IVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 437



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 2/212 (0%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K +  + AR V  L   RNVVSWTS+I   AQN     AL  F E   +    PN  
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGV-VPNDF 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
                  A ASL   V+GK  H + V+ G   +  V  +  DMY K    + + K+F+ I
Sbjct: 60  TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
              ++ T+ + I  +   G  R +++ F E       PN +TF   L+ACS    ++ G+
Sbjct: 120 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGM 179

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           Q L  +  + G   D      ++D  G+  ++
Sbjct: 180 Q-LHGLVLRSGFDTDVSVCNGLIDFYGKCKQI 210


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 343/572 (59%), Gaps = 7/572 (1%)

Query: 37   LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
            L+ C  L +L     +H+ ++K+GF  N +  + LI+ Y +  +  +A ++   + E +V
Sbjct: 470  LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 94   VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            VS+T+++AGY+       AL LF++M    +  +   FA+ I AC+ +  L  G+QIH  
Sbjct: 530  VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 154  IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                GF  +L + ++L+ +Y +C  +  A   F+ +G +N +SW S++   AQ+    EA
Sbjct: 590  SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 214  LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
            L++F     ++    N     S I+A ASL  +  G+  H +V+++G +    V+++L+ 
Sbjct: 650  LQVFVRM-LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLIS 708

Query: 274  MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
            +YAK GS++ + + FN +S  +V+++ +MI G +++G G  +L LF EM   GI PN VT
Sbjct: 709  LYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVT 768

Query: 334  FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            FVGVL ACSH GLV EG+ + +SM++ + ++P ++HY CVVD+LGR G+LD A +  K +
Sbjct: 769  FVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEM 828

Query: 394  QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
             +  D   ++W TLLSA  +H  ++I   A++ L+E   + +  YV +SN YA++ +W +
Sbjct: 829  PIPADA--MIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIH 886

Query: 454  VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
                R  MK  G+ KEPG SW+E+++  +AFYAG+ L    +++   +  L R+  E GY
Sbjct: 887  RDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGY 946

Query: 514  VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
            V     L+  + E   ++ I  +HSE+LA+AFGL+S+   I IR+MKNLR+C DCH+  K
Sbjct: 947  VQDSFSLL-NESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIK 1005

Query: 574  LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             +S I  R  +VRD +RFHHF  G CSC DFW
Sbjct: 1006 YVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 202/387 (52%), Gaps = 7/387 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K GF S T+  N L+  Y R +K   A ++F  M   + VSY SL++G +  G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF KM  + + P+  T A+++ AC+ +  L  G Q+H+H    G   ++++  S
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGS 402

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC DV+ A + F      N+V W  ++VA+ Q     ++ E+FR+   +    P
Sbjct: 403 LLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM-IP 461

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ    S++  C SLG L  G+  H  V+++G + N  V S L+DMYAK G +  + ++ 
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+    VV++T+MI G  ++ +   +L LF EM  RGI+ +++ F   + AC+    + 
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H  S    +G   D      ++ +  R GR+ EAY   + I    D   + W +L
Sbjct: 582 QGQQIHAQSYAAGFG--ADLSINNALISLYARCGRIQEAYLAFEKI---GDKNNISWNSL 636

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQV 434
           +S     G  + A++   +++ +  +V
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEV 663



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 192/400 (48%), Gaps = 5/400 (1%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           + + R   +  C T A  +        L     +HS  +K+G  ++      L++ Y + 
Sbjct: 351 TKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC 410

Query: 76  KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135
              + A + F      N+V +  ++  Y  +     +  +F++M    + PN+FT+ +++
Sbjct: 411 ADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSIL 470

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           + C+ L  L  G+QIHTH+   GFQ N+ VCS L+DMY K   +  A R+   +   +VV
Sbjct: 471 RTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVV 530

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWT++I  + Q+    EAL++F E  Y+     N    AS I+ACA +  L  G+  H  
Sbjct: 531 SWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG-FASAISACAGIRALRQGQQIHAQ 589

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
              +G   +  + +AL+ +YA+CG +  +   F +I + + +++ S++ G A+ G    +
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L +F  M+    + N  T+   + A +    + +G Q + SM  K G   + +    ++ 
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSEREVSNSLIS 708

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +  ++G + +A++    +    +   + W  +++    HG
Sbjct: 709 LYAKSGSISDAWREFNDM---SERNVISWNAMITGYSQHG 745



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 187/376 (49%), Gaps = 9/376 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS     GF S+    N LI+ Y +    + A+++F+ +   ++V++ ++++G    G 
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+LLF  M  + ++P  +  ++V+ A + +     G+Q+H  +  +GF     VC+ 
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-- 226
           LV +Y +   +  A R+F  M  R+ VS+ S+I    Q      ALE+F +     RD  
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ---RDCL 358

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+   +AS+++ACAS+G L  G   H   +++G   + ++  +L+D+Y+KC  V  + K
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            F      ++V +  M+V   +      S ++F +M   G+ PN  T+  +L  C+  G 
Sbjct: 419 FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G Q + +   K G   +    + ++DM  + G+L  A ++ + +   P+   + W  
Sbjct: 479 LYLGEQ-IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL---PEDDVVSWTA 534

Query: 407 LLSASRLHGRVDIAVE 422
           +++    H     A++
Sbjct: 535 MIAGYVQHDMFSEALQ 550



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 197/378 (52%), Gaps = 11/378 (2%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L     +H  I KSGF      ++ L++ Y R      A ++FDE    +V S+  ++  
Sbjct: 74  LFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHV 133

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG--KQIHTHIETFGFQ 160
           ++          LF++ML   + PN +TFA V+KAC +  D+     KQ+H+    +GF 
Sbjct: 134 FVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC-VGGDIAFNYVKQVHSRTFYYGFD 192

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            + +V + L+D+Y K   ++ A++VF+ +  +++V+W ++I   +QN    EA+ +F + 
Sbjct: 193 SSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM 252

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            + S   P  ++L+SV++A   +     G+  H +V++ G      V + LV +Y++   
Sbjct: 253 -HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRK 311

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  ++++F+ +++   V+Y S+I G  + G    +L+LF +M    +KP+ +T   +L A
Sbjct: 312 LISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSA 371

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+  G + +G+Q L S   K G+  D      ++D+  +   ++ A+K   + + +    
Sbjct: 372 CASVGALHKGMQ-LHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE---N 427

Query: 401 PLLWGTLLSASRLHGRVD 418
            +LW  +L A   +G++D
Sbjct: 428 IVLWNVMLVA---YGQLD 442



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 24/322 (7%)

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           +I L+ F +  G  V  N   +  +++ C     L    ++H  I   GF    ++  SL
Sbjct: 42  RIQLMNFMEERG--VRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           VD Y +  D  GA +VFD    R+V SW  +I          +   +FR    +    PN
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT-PN 158

Query: 230 QHMLASVINACASLGRLVSGKVA-------HGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            +  A V+ AC      V G +A       H      G + + +VA+ L+D+Y+K G + 
Sbjct: 159 GYTFAGVLKAC------VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + KVFN I    +VT+ +MI G ++ GL   ++ LF +M +  I P       VL A +
Sbjct: 213 SAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST 272

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--VVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
              L + G Q L  +  K+G    ++ Y C  +V +  R+ +L  A ++  ++    DG 
Sbjct: 273 KIQLFELGEQ-LHCLVIKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDG- 327

Query: 401 PLLWGTLLSASRLHGRVDIAVE 422
            + + +L+S     G  D A+E
Sbjct: 328 -VSYNSLISGLVQQGFSDRALE 348


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/583 (35%), Positives = 351/583 (60%), Gaps = 14/583 (2%)

Query: 29  TKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           +++ F   ++ C +L  L     +H  ++K GFL +      L+  Y +      A +LF
Sbjct: 294 SESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLF 353

Query: 86  DEM-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
            E+    NVVS+T++++G++     + A+ LF +M    V PNEFT++ ++ A      +
Sbjct: 354 KEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP----V 409

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           I+  ++H  +    ++ +  V ++L+D Y K   V+ A +VF  +  +++V+W++++  +
Sbjct: 410 ISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGY 469

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL-GRLVSGKVAHGVVVRSGCEF 263
           AQ  +   A++MF E   +   +PN+   +S++N CA+    +  GK  HG  ++S  + 
Sbjct: 470 AQTGETEAAIKMFGELT-KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDS 528

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V+SAL+ MYAK G++  +++VF R     +V++ SMI G A++G    +LD+F EM 
Sbjct: 529 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMK 588

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            R +K + VTF+GV  AC+H+GLV+EG ++ D M R   I P  +H +C+VD+  R G+L
Sbjct: 589 KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQL 648

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           ++A K+ +++  +P  G  +W T+L+A R+H + ++   A+ ++I    + + AYV LSN
Sbjct: 649 EKAMKVIENMP-NP-AGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSN 706

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA +G+W+    +R  M    + KEPG SW+E++++TY+F AG+       ++   L +
Sbjct: 707 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLED 766

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           L  ++K+ GY    T  V  D++DE +E ++  HSERLA+AFGLI+ PKG  + I+KNLR
Sbjct: 767 LSTRLKDLGY-EPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLR 825

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHF-RNGSCSCGDFW 605
           +C DCH V KLI+ I ER+ VVRD NRFHHF  +G CSCGDFW
Sbjct: 826 VCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 202/385 (52%), Gaps = 19/385 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+G        N LIN Y++    + AR LFD+    +VV++ S+++GY   G 
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL +F  M  N V  +E +FA+VIK C+ L +L   +Q+H  +  +GF ++  + ++
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335

Query: 169 LVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+  Y KC  +  A R+F  +GC  NVVSWT++I    QN    EA+++F E   +   R
Sbjct: 336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV-R 394

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+   + ++ A      ++S    H  VV++  E +  V +AL+D Y K G V  + KV
Sbjct: 395 PNEFTYSVILTALP----VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKV 450

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL- 346
           F+ I +  +V +++M+ G A+ G    ++ +F E+   GIKPN+ TF  +L+ C+ +   
Sbjct: 451 FSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNAS 510

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           + +G Q     +  + I        CV    + M  + G ++ A ++ K  Q + D   +
Sbjct: 511 MGQGKQ-----FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR-QREKD--LV 562

Query: 403 LWGTLLSASRLHGRVDIAVEASNQL 427
            W +++S    HG+   A++   ++
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEM 587



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 195/384 (50%), Gaps = 14/384 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H + +K GFL +      L++ Y++    +  R++FDEM E NVV++T+L++GY     
Sbjct: 115 LHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM 174

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               L LF +M      PN FTFA  +   +       G Q+HT +   G    + V +S
Sbjct: 175 NDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 234

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF--REFNYQSRD 226
           L+++Y KC +V  AR +FD    ++VV+W S+I  +A N    EAL MF     NY    
Sbjct: 235 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV--- 291

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           R ++   ASVI  CA+L  L   +  H  VV+ G  F+  + +AL+  Y+KC ++  + +
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 287 VFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +F  I    +VV++T+MI G  +      ++DLF+EM  +G++PN+ T+  +L A     
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
             +   Q + + Y +   +      T ++D   + G+++EA K+   I    D   + W 
Sbjct: 412 PSEVHAQVVKTNYERSSTVG-----TALLDAYVKLGKVEEAAKVFSGID---DKDIVAWS 463

Query: 406 TLLSASRLHGRVDIAVEASNQLIE 429
            +L+     G  + A++   +L +
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTK 487



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 167/330 (50%), Gaps = 4/330 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  LFD+    +  SY SL+ G+   G+ Q A  LF  +    +  +   F++V+K  + 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L D + G+Q+H     FGF  ++ V +SLVD Y K ++    R+VFD M  RNVV+WT++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  +A+N+   E L +F     +   +PN    A+ +   A  G    G   H VVV++G
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEG-TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            +    V+++L+++Y KCG+V  +  +F++    SVVT+ SMI G A  GL   +L +F 
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M    ++ ++ +F  V+  C++   +    + L     KYG + D    T ++    + 
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKEL-RFTEQLHCSVVKYGFLFDQNIRTALMVAYSKC 343

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
             + +A +L K I     G  + W  ++S 
Sbjct: 344 TAMLDALRLFKEIGC--VGNVVSWTAMISG 371


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 343/603 (56%), Gaps = 49/603 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   L+SG   + F  N +++ Y +    + A ++F+ M   +VVS+ +++ GY  +G+
Sbjct: 253 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 312

Query: 109 PQIALLLFQKM------LGNLVW-----------------------------PNEFTFAT 133
              AL LF+K+      L  + W                             PN  T  +
Sbjct: 313 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVS 372

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYN-------LVVCSSLVDMYGKCNDVDGARRVF 186
           ++  C++   L+ GK+ H H   +    +       L+V ++L+DMY KC     AR +F
Sbjct: 373 LLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMF 432

Query: 187 DLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQSRDRPNQHMLASVINACASL 243
           DL+    R+VV+WT +I  +AQ+ + +EALE+F +     +   PN   ++  + ACA L
Sbjct: 433 DLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARL 492

Query: 244 GRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           G L  G+  H  V+R+  E   + VA+ L+DMY+K G V+ +  VF+ +   + V++TS+
Sbjct: 493 GALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSL 552

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           + G   +G G  +L +F EM   G+ P+ VTFV VL+ACSHSG+VD+GI + + M + +G
Sbjct: 553 MTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFG 612

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           ++P A+HY C+VD+L R GRLDEA +L + + + P   P +W  LLSA R++  V++   
Sbjct: 613 VVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPT--PAVWVALLSACRVYANVELGEY 670

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           A+NQL+E       +Y  LSN YA A  W++V  +R  MK TGI K PGCSWV+ R  T 
Sbjct: 671 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 730

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F+AG+       ++  LLR+L +++K  GYV         DV+DE + +++  HSE+LA
Sbjct: 731 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNR-FALHDVDDEEKGDLLSEHSEKLA 789

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           LA+G+++   G  IRI KNLR C DCH  F  IS I+E + +VRD +RFHHF+NGSCSC 
Sbjct: 790 LAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCR 849

Query: 603 DFW 605
            +W
Sbjct: 850 GYW 852



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 212/455 (46%), Gaps = 56/455 (12%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN---V 93
             +CK L S   +H ++L  G   +     H+I+ Y+       A  +    L P+   V
Sbjct: 36  FHQCKSLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRR-LHPSSHTV 91

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHT 152
             +  L+   +++G  +  L L+++M   L W P+ +TF  V+KAC  +     G  +H 
Sbjct: 92  FWWNQLIRRSVHLGFLEDVLQLYRRM-QRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQNAQ 209
            +   GF++N+ V + LV MYG+C   + AR+VFD M   G  ++VSW SI+ A+ Q   
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VA 268
              A++MF         RP+   L +V+ ACAS+G    GK  HG  +RSG  F DV V 
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGL-FEDVFVG 269

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-----------------------------------N 293
           +A+VDMYAKCG +  ++KVF R+                                     
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ- 352
            +VVT++++I G A+ GLG  +LD+F +M   G +PN VT V +L  C+ +G +  G + 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 353 HLDSMYRKYGIIP-----DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           H  ++     +       D      ++DM  +      A  +   I    D   + W  L
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP-PKDRSVVTWTVL 448

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           +  +  HG  + A+E  +Q+++ +  V     T+S
Sbjct: 449 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 483



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 17/320 (5%)

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P+  LL       +         +T+   C  LA   + + IH  +   G  ++    +
Sbjct: 9   KPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLA---SAELIHQQLLVQGLPHD---PT 62

Query: 168 SLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++ MY   N    A  V   +      V  W  +I          + L+++R       
Sbjct: 63  HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 122

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            RP+ +    V+ AC  +     G   H VV  SG E+N  V + LV MY +CG+   + 
Sbjct: 123 -RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 181

Query: 286 KVFNRISNPSV---VTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHAC 341
           +VF+ +    V   V++ S++    + G    ++ +F  M    GI+P+ V+ V VL AC
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +  G    G Q +     + G+  D      VVDM  + G ++EA K+ + ++V      
Sbjct: 242 ASVGAWSRGKQ-VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK---DV 297

Query: 402 LLWGTLLSASRLHGRVDIAV 421
           + W  +++     GR D A+
Sbjct: 298 VSWNAMVTGYSQIGRFDDAL 317



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C  L +L     +H+ +L++ F S   F  N LI+ Y +      AR +FD M + N
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
            VS+TSLM GY   G+ + AL +F +M    + P+  TF  V+ ACS
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACS 592


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 325/570 (57%), Gaps = 5/570 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           LQ    L  L  VH+ ++ SG+  + F L  L+N           RQ+F  +  P+   +
Sbjct: 19  LQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLF 78

Query: 97  TSLMAGYINMGQPQI-ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           TSL+          + +L  + +M+ + V P+ +TF +VIK+C+ L  L  G+ IH H+ 
Sbjct: 79  TSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVL 138

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             GF  ++ V ++L+  YGKC  +  AR+VFD M  R+VV+W S+I  + QN    EA+ 
Sbjct: 139 VNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIR 198

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +F     +    PN     SV++ACA LG  + G   H   V +G + N V+ ++L++MY
Sbjct: 199 LFDRMK-EIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMY 257

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
            +CG+V+ + +VF+ +   +VV +T+MI G    G G  +++LF+EM   G+ PN +TFV
Sbjct: 258 TRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFV 317

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            VL AC+H+GLV+EG +  +SM  +Y ++P+ +H+ C+VDMLGR G LDEAY   K I  
Sbjct: 318 AVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHE 377

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           +P   P +W  +L A ++H    +  + +   + S       YV LSN YALAG  + V 
Sbjct: 378 EP--APAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVE 435

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R  M R  + K+ G S +++  +TY F  G+      +E+   L +L RK +E GYV 
Sbjct: 436 MVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVT 495

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
               ++    E+E    + G HSE+LA+AFGL+   +G  IRI+KNLRMC DCH   K I
Sbjct: 496 VSDSVMHELEEEEREYAL-GYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYI 554

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S I  R+ +VRD  RFHHF+NGSCSC D+W
Sbjct: 555 SVISNREIIVRDKLRFHHFKNGSCSCLDYW 584


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 328/560 (58%), Gaps = 7/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++  G   + +  N +++ Y +    + AR +FD ML  ++ S+ ++M+G++  G+
Sbjct: 146 VHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGE 205

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ---YNLVV 165
            + A  +F  M  +    +  T   ++ AC  + DL  GK+IH ++   G      N  +
Sbjct: 206 ARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFL 265

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S++DMY  C  V  AR++F+ +  ++VVSW S+I  + +     +ALE+F        
Sbjct: 266 MNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGA 325

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P++  + SV+ AC  +  L  G      VV+ G   N VV +AL+ MYA CGS+  + 
Sbjct: 326 -VPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCAC 384

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF+ +   ++   T M+ G   +G GR ++ +F EM+ +G+ P++  F  VL ACSHSG
Sbjct: 385 RVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSG 444

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LVDEG +    M R Y + P   HY+C+VD+LGR G LDEAY + +++++ P+    +W 
Sbjct: 445 LVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNED--VWT 502

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LLSA RLH  V +AV ++ +L E N    + YV LSN YA    WE+V ++R+ + +  
Sbjct: 503 ALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRR 562

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K P  S+VE+    + F+ G+   E+  ++ + L++L  ++K+ GY    T LV  DV
Sbjct: 563 LRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGY-KPDTSLVLYDV 621

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           E+E +E+++  HSERLALAF LI+   G TIRI KNLR+C DCH V K+IS +  R+ ++
Sbjct: 622 EEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIM 681

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD+ RFHHFR+G CSCG +W
Sbjct: 682 RDICRFHHFRDGLCSCGGYW 701



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 206/432 (47%), Gaps = 17/432 (3%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
            +Q L   K L     +H+ +   G L  NT+    L  CY        A+ +FD+++  
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLK 87

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N   + S++ GY     P  AL L+ KML     P+ FT+  V+KAC  L     G+++H
Sbjct: 88  NSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVH 147

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G + ++ V +S++ MY K  DV+ AR VFD M  R++ SW +++    +N +  
Sbjct: 148 ALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEAR 207

Query: 212 EALEMFREFNYQSRDR--PNQHMLASVINACASLGRLVSGKVAHGVVVR---SGCEFNDV 266
            A E+F +     RD    ++  L ++++AC  +  L  GK  HG VVR   SG   N  
Sbjct: 208 GAFEVFGDMR---RDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF 264

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           + ++++DMY  C SV+ + K+F  +    VV++ S+I G  K G    +L+LF  M+  G
Sbjct: 265 LMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVG 324

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
             P++VT + VL AC+    +  G   + S   K G + +    T ++ M    G L  A
Sbjct: 325 AVPDEVTVISVLAACNQISALRLGAT-VQSYVVKRGYVVNVVVGTALIGMYANCGSLVCA 383

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGR----VDIAVEASNQLIESNQQVANAYVTLS 442
            ++   +   P+        +++   +HGR    + I  E   + +  ++ +  A ++  
Sbjct: 384 CRVFDEM---PEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSAC 440

Query: 443 NTYALAGEWENV 454
           +   L  E + +
Sbjct: 441 SHSGLVDEGKEI 452



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 5/175 (2%)

Query: 34  IQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           I  L  C  + +L   A+V S ++K G++ N      LI  Y        A ++FDEM E
Sbjct: 333 ISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPE 392

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N+ + T ++ G+   G+ + A+ +F +MLG  V P+E  F  V+ ACS    +  GK+I
Sbjct: 393 KNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEI 452

Query: 151 -HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            +     +  +      S LVD+ G+   +D A  V + M  + N   WT+++ A
Sbjct: 453 FYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSA 507


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 323/559 (57%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSN-TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+  L+ G+L +  F     ++ Y +     +AR+LFDEM   NVV++ ++M   +  G
Sbjct: 142 LHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDG 201

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P   +  +  + G    PN  +      AC+ + +L  G+Q +  +   GF  ++ V +
Sbjct: 202 RPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSN 261

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           S+VD YGKC  V  AR VFD MG RN VSW S++VA+AQN    EA  ++     ++ + 
Sbjct: 262 SVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGAR-RAGEE 320

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P   M++SV+  CA L  L  G+  H V VRS  + N  VASALVDMY KCG +  +++V
Sbjct: 321 PTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQV 380

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGL 346
           F  +   ++VT+ +MI G A  G    +L +F++MI  +   PN +T V VL ACS  GL
Sbjct: 381 FFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGL 440

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
             EG +   +M  ++GI P  +HY CVVD+L R G  + AYK+ + + + P     +WG 
Sbjct: 441 TKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSIS--VWGA 498

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL   ++HG+ ++   A+ +L E + Q +  +V LSN  A AG W     +R EMK  GI
Sbjct: 499 LLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGI 558

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K+PG SW+  ++  + F A +   +   E+ +LL +L+ +M+  GY+   T     D+E
Sbjct: 559 KKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMP-DTQYALYDLE 617

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  V  HSE+LALAFGLI IP GI IRIMKNLR+C DCH  FK IS I  R+ +VR
Sbjct: 618 EEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVR 677

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D N FHHF+N  CSC D+W
Sbjct: 678 DNNMFHHFKNYECSCKDYW 696



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 179/385 (46%), Gaps = 10/385 (2%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
            F   HL+N Y +L     A         P VVSYT+ ++G     +P  AL  F  ML 
Sbjct: 53  PFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLR 112

Query: 122 NLVWPNEFTFATVIK-ACSMLADLITGKQIHTHIETFGFQYN--LVVCSSLVDMYGKCND 178
             + PN+FTF +  K A S       G Q+H     FG+  +   V C++L DMY K   
Sbjct: 113 LGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCAAL-DMYFKTGC 171

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  ARR+FD M  RNVV+W +++     + +  E +E +      +   PN   + +  N
Sbjct: 172 LALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLR-GAGGMPNVVSVCAFFN 230

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           ACA +  L  G+  +G V + G   +  V++++VD Y KC  V  +  VF+ +   + V+
Sbjct: 231 ACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVS 290

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + SM+V  A+ G    +  ++      G +P D     VL  C+    +D G + L ++ 
Sbjct: 291 WCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLG-RALHAVA 349

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            +  I  +    + +VDM G+ G +++A ++   +   P    + W  ++      G   
Sbjct: 350 VRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEM---PQRNLVTWNAMIGGYAHIGDAH 406

Query: 419 IAVEASNQLIESNQQVANAYVTLSN 443
            A+   +++I   Q+ A  Y+TL N
Sbjct: 407 NALSVFDKMI-MGQETAPNYITLVN 430



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ L    ++H+  ++S   SN F  + L++ Y +    + A Q+F EM + N+
Sbjct: 330 LTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNL 389

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQI-H 151
           V++ +++ GY ++G    AL +F KM +G    PN  T   V+ ACS       G ++  
Sbjct: 390 VTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQ 449

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQN 207
           T    FG +  +   + +VD+  +    + A ++   M  R  +S W +++     H + 
Sbjct: 450 TMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKT 509

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             G  A E   E + Q       H+L S  N  AS GR
Sbjct: 510 ELGRIAAEKLFELDPQDS---GNHVLLS--NMLASAGR 542



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 5/197 (2%)

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKV 287
           +  +LA  + A  +      G+ AH   +R         + + LV++Y+K      +   
Sbjct: 16  DAQLLAGAVEAAIATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAAS 75

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
                +P+VV+YT+ I GAA++     +L  F  M+  G++PND TF     A + +   
Sbjct: 76  LAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPR 135

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTC-VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
                 L ++  ++G +PD    +C  +DM  +TG L  A +L   +   P+   + W  
Sbjct: 136 SAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEM---PNRNVVAWNA 192

Query: 407 LLSASRLHGRVDIAVEA 423
           +++ + L GR    VEA
Sbjct: 193 VMTNAVLDGRPLETVEA 209


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 333/559 (59%), Gaps = 8/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K+G  ++ F    LIN Y +      A ++FD++ + N  S+T+ ++GY+ +G+
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ +F+++L   + P+ F+   V+ AC    DL +G+ I  +I   G   N+ V ++
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATA 249

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD YGKC +++ AR VFD M  +N+VSW+S+I  +A N    EAL++F +   +   +P
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGL-KP 308

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF--NDVVASALVDMYAKCGSVNYSDK 286
           + + +  V+ +CA LG L  G  A  ++  +G EF  N V+ +AL+DMYAKCG ++ + +
Sbjct: 309 DCYAMVGVLCSCARLGALELGDWASNLI--NGNEFLDNSVLGTALIDMYAKCGRMDRAWE 366

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF  +     V + + I G A  G  + +L LF +M   GIKP+  TFVG+L AC+H+GL
Sbjct: 367 VFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGL 426

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V+EG ++ +SM   + + P+ +HY C+VD+LGR G LDEA++L KS+ ++ +   ++WG 
Sbjct: 427 VEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANA--IVWGA 484

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL   RLH    +      +LI      +  YV LSN YA + +WE    +RS M   G+
Sbjct: 485 LLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGV 544

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG SW+E+    + F  G+       ++ + L EL + +K  GYV   T  V  D+E
Sbjct: 545 KKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYV-PTTDHVLFDIE 603

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  +G HSE+LA+AFGLIS      I ++KNLR+C DCH+  K IS I  R+ +VR
Sbjct: 604 EEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVR 663

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH F +G CSC D+W
Sbjct: 664 DNNRFHCFTDGLCSCKDYW 682



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 216/417 (51%), Gaps = 9/417 (2%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           S   K   IQ     KHL     +H+ +L+ G   +T+ LN ++        T  + ++ 
Sbjct: 9   SAGIKNRLIQGFSCLKHL---KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRIL 65

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D+  EPN+  + +++ G +     Q ++ ++  M    + P+ FTF  V+KAC+ + D  
Sbjct: 66  DQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSE 125

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            G ++H+ +   G + +  V  SL+++Y KC  +D A +VFD +  +N  SWT+ I  + 
Sbjct: 126 LGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYV 185

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
              +  EA++MFR    +   RP+   L  V++AC   G L SG+     +  +G   N 
Sbjct: 186 GVGKCREAIDMFRRL-LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNV 244

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            VA+ALVD Y KCG++  +  VF+ +   ++V+++SMI G A  GL + +LDLF +M++ 
Sbjct: 245 FVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNE 304

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           G+KP+    VGVL +C+  G ++ G     ++      + ++   T ++DM  + GR+D 
Sbjct: 305 GLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDR 363

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN-QQVANAYVTL 441
           A+++ + ++       ++W   +S   + G V  A+    Q+ +S  +   N +V L
Sbjct: 364 AWEVFRGMR---KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGL 417


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 334/564 (59%), Gaps = 4/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L++   VH+  +K G  SN    N LI+ Y +    +     F+ M E +++S+T+++A
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY        AL L +K+    +  +     +++ ACS L      K+IH ++   G   
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA- 485

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           ++++ +++V++YG+   VD AR VF+ +  +++VSWTS+I     N    EALE+F    
Sbjct: 486 DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSL- 544

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            ++   P+   L SV+ A A+L  L  GK  HG ++R G     ++A++LVDMYA+CG++
Sbjct: 545 IETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTM 604

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  +FN +    ++ +TSMI     +G G+ ++DLF++M    + P+ +TF+ +L+AC
Sbjct: 605 ENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYAC 664

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLV EG QH + M  +Y + P  +HY C+VD+L R+  L+EAY   +++ ++P    
Sbjct: 665 SHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAE- 723

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W  LL A R+H   D+   A+ +L++ N + +  YV +SNT+A  G W +V  +RS M
Sbjct: 724 -VWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIM 782

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K   + K+PGCSW+E+ ++ + F A +    + + +   L +  + +KE+G    +T LV
Sbjct: 783 KGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLV 842

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
           F DV +E + +++  HSERLAL +GL+   KG  +RI KNLR+C DCH  FK+ S+I +R
Sbjct: 843 FHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQR 902

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
             VVRD +RFHHF  G CSCGDFW
Sbjct: 903 TLVVRDASRFHHFERGLCSCGDFW 926



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 220/424 (51%), Gaps = 10/424 (2%)

Query: 12  TLAASSLTRQNKRSSCHTKAH-FIQQLQECK--HLISLA-SVHSEILKSGFLSNTFTLNH 67
           +L A SL R+ +     +  + F+  LQ C+    I +   +H+ ILKS   ++ +  N 
Sbjct: 232 SLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNA 291

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y    + + A ++F  ML  + VS+ +L++G +       A+  FQ M  +   P+
Sbjct: 292 LIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPD 351

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           + +   +I A    A+L+ G ++H +    G   N+ + +SL+DMYGKC  V      F+
Sbjct: 352 QVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFE 411

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  ++++SWT+II  +AQN    +AL + R+   +  D  +  M+ S++ AC+ L    
Sbjct: 412 YMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV-DPMMIGSILLACSGLKSEK 470

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
             K  HG V++ G   + ++ +A+V++Y +   V+Y+  VF  I++  +V++TSMI    
Sbjct: 471 LIKEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCV 529

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
             GL   +L+LFN +I   I+P+ +T V VL+A +    + +G +    + RK G   + 
Sbjct: 530 HNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRK-GFFLEG 588

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                +VDM  R G ++ A  +   ++       +LW ++++A+ +HG    A++  +++
Sbjct: 589 LIANSLVDMYARCGTMENARNIFNYVK---QRDLILWTSMINANGMHGCGKDAIDLFSKM 645

Query: 428 IESN 431
            + N
Sbjct: 646 TDEN 649



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 192/385 (49%), Gaps = 13/385 (3%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKS-GFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           + Q L+ C   K L     +H+  LK+  +L + F     ++ Y +      A ++FD+M
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
            E  + ++ +++   ++ G+   A+ L+++M    V  + FTF  V+KAC    +   G 
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGC 168

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQ 206
           +IH      G+   + VC++L+ MY KC D+ GAR +FD  LM   + VSW SII AH  
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVG 228

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
             +  EAL +FR    +     N +   S + AC     +  G+  H V+++S   F DV
Sbjct: 229 EGESLEALSLFRRMQ-EVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSN-HFTDV 286

Query: 267 -VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V++AL+ MYA CG +  +++VF  +     V++ +++ G  +  +   +++ F +M   
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           G KP+ V+ + ++ A   S  +  G++ + +   K+GI  +      ++DM G+   +  
Sbjct: 347 GQKPDQVSVLNMIAASGRSANLLAGME-VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVK- 404

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSA 410
              +  + +  P+   + W T+++ 
Sbjct: 405 --YMGSAFEYMPEKDLISWTTIIAG 427



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 186/388 (47%), Gaps = 14/388 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE--MLEPNVVSYTSLMAGYINM 106
           +H   +K G+    F  N LI  Y +      AR LFD   M + + VS+ S+++ ++  
Sbjct: 170 IHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGE 229

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G+   AL LF++M    V  N +TF + ++AC     +  G+ IH  I       ++ V 
Sbjct: 230 GESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVS 289

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+ MY  C  ++ A RVF  M  ++ VSW +++    QN    +A+  F++    S  
Sbjct: 290 NALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQ-DSGQ 348

Query: 227 RPNQHMLASVINACASLGR---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           +P+Q    SV+N  A+ GR   L++G   H   ++ G + N  + ++L+DMY KC  V Y
Sbjct: 349 KPDQ---VSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKY 405

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
               F  +    ++++T++I G A+      +L+L  ++    +  + +    +L AC  
Sbjct: 406 MGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC-- 463

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           SGL  E +      Y   G + D      +V++ G    +D A  + +SI        + 
Sbjct: 464 SGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESIN---SKDIVS 520

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESN 431
           W ++++    +G    A+E  N LIE+N
Sbjct: 521 WTSMITCCVHNGLAIEALELFNSLIETN 548



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 150/333 (45%), Gaps = 10/333 (3%)

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +P +  ++  ++ C+    L  G+Q+H H ++T  +  ++ + +  V MYGKC     A 
Sbjct: 43  FPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAV 102

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           +VFD M  R + +W ++I A     +  EA+E+++E         +      V+ AC + 
Sbjct: 103 KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSL-DAFTFPCVLKACGAF 161

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR--ISNPSVVTYTS 301
                G   HGV V+ G      V +AL+ MYAKCG +  +  +F+   +     V++ S
Sbjct: 162 KERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNS 221

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           +I      G    +L LF  M   G++ N  TFV  L AC     +  G + + ++  K 
Sbjct: 222 IISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG-RGIHAVILKS 280

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
               D      ++ M    G++++A ++ KS+        + W TLLS    +     A+
Sbjct: 281 NHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK---DCVSWNTLLSGMVQNDMYSDAI 337

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
                + +S Q+     V++ N  A +G   N+
Sbjct: 338 NHFQDMQDSGQKPDQ--VSVLNMIAASGRSANL 368


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 333/578 (57%), Gaps = 45/578 (7%)

Query: 68  LINCYVRLKKTQVARQLFDEM----LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           +I  Y RL   + A++LF EM    +EPN+VS+  ++AG+ N G    A+ +F+ ML   
Sbjct: 176 MIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQG 235

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
            WP+  T + V+ A   L D++ G Q+H ++   G   +  V S+++DMYGKC  V    
Sbjct: 236 FWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMS 295

Query: 184 RVFD-------------LMGCR----------------------NVVSWTSIIVAHAQNA 208
           RVFD             L G                        NVV+WTSII + +QN 
Sbjct: 296 RVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNG 355

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-V 267
           +  EALE+FR+      + PN   + S+I AC ++  L+ GK  H   +R G  F+DV V
Sbjct: 356 KDLEALELFRDMQAYGVE-PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGI-FDDVYV 413

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            SAL+DMYAKCG +  + + F+++S  ++V++ +++ G A +G  + ++++F+ M+  G 
Sbjct: 414 GSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQ 473

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           KP+ VTF  VL AC+ +GL +EG +  +SM  ++GI P  +HY C+V +L R G+L+EAY
Sbjct: 474 KPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAY 533

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
            + K +  +PD    +WG LLS+ R+H  + +   A+ +L          Y+ LSN YA 
Sbjct: 534 SIIKEMPFEPDA--CVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYAS 591

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            G W+  + +R  MK  G+ K PG SW+E+  + +   AG+    +  ++L  L +L  +
Sbjct: 592 KGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQ 651

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           MK+ GY+  KT  V  DVE++ +E+I+  HSE+LA+  GL++   G  ++++KNLR+C D
Sbjct: 652 MKKSGYL-PKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDD 710

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH V K+IS +  R+  VRD NRFHHF++G CSCGDFW
Sbjct: 711 CHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 194/457 (42%), Gaps = 78/457 (17%)

Query: 50  HSEILKSGFLSNTFTLNHLINCY---VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           H+ IL+    S+T     L++ Y   + L   Q++  L   +  P + S++SL+  +   
Sbjct: 23  HALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARS 82

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                 L  F  +    + P+ F   + IK+C+ L  L  G+Q+H      GF  + +V 
Sbjct: 83  HHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVA 142

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           SSL  MY KC+ +  AR++FD M  R+VV W+++I  +++     EA E+F E      +
Sbjct: 143 SSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVE 202

Query: 227 R----------------------------------PNQHMLASVINACASLGRLVSGKVA 252
                                              P+   ++ V+ A   L  +V G   
Sbjct: 203 PNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQV 262

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP------------------ 294
           HG V++ G   +  V SA++DMY KCG V    +VF+ +                     
Sbjct: 263 HGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMV 322

Query: 295 -----------------SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
                            +VVT+TS+I   ++ G    +L+LF +M + G++PN VT   +
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSL 382

Query: 338 LHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           + AC +   +  G + H  S+ R  GI  D    + ++DM  + GR+  A +    +   
Sbjct: 383 IPACGNISALMHGKEIHCFSLRR--GIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSAL 440

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
                + W  ++    +HG+    +E  + +++S Q+
Sbjct: 441 ---NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQK 474



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 36/233 (15%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM------------------ 88
           A VH  ++K G  S+ F ++ +++ Y +    +   ++FDE+                  
Sbjct: 260 AQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRN 319

Query: 89  -----------------LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
                            +E NVV++TS++A     G+   AL LF+ M    V PN  T 
Sbjct: 320 GMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTI 379

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
            ++I AC  ++ L+ GK+IH      G   ++ V S+L+DMY KC  +  ARR FD M  
Sbjct: 380 PSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSA 439

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
            N+VSW +++  +A + +  E +EMF     QS  +P+      V++ACA  G
Sbjct: 440 LNLVSWNAVMKGYAMHGKAKETMEMFH-MMLQSGQKPDLVTFTCVLSACAQNG 491



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 5/243 (2%)

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL---MGCRNVV 195
           S  A L   +Q H  I       +  + +SL+  Y     +   +    L   +    + 
Sbjct: 11  SSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLF 70

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           S++S+I A A++      L  F    +  R  P+  +L S I +CASL  L  G+  H  
Sbjct: 71  SFSSLIHAFARSHHFPHVLTTFSHL-HPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAF 129

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
              SG   + +VAS+L  MY KC  +  + K+F+R+ +  VV +++MI G ++ GL   +
Sbjct: 130 AAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEA 189

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
            +LF EM S G++PN V++ G+L    ++G  DE +     M  + G  PD    +CV+ 
Sbjct: 190 KELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-GFWPDGSTVSCVLP 248

Query: 376 MLG 378
            +G
Sbjct: 249 AVG 251


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/547 (39%), Positives = 330/547 (60%), Gaps = 9/547 (1%)

Query: 56  SGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL 115
           +G     F +N LIN YV+      A QLFD+M + NV+S+T++++ Y      Q AL L
Sbjct: 42  NGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 101

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
              ML + V PN +T+++V++AC+ ++D+   + +H  I   G + ++ V S+L+D++ K
Sbjct: 102 LVLMLRDGVRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAK 158

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
             + + A  VFD M   + + W SII   AQN++   ALE+F+    ++     Q  L S
Sbjct: 159 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK-RAGFIAEQATLTS 217

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+ AC  L  L  G  AH  +V+   +   ++ +ALVDMY KCGS+  + +VFN++    
Sbjct: 218 VLRACTGLALLELGMQAHVHIVKYDQDL--ILNNALVDMYCKCGSLEDARRVFNQMKERD 275

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           V+T+++MI G A+ G  + +L LF  M S G KPN +T VGVL ACSH+GL+++G  +  
Sbjct: 276 VITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFR 335

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           SM + YGI P  +HY C++D+LG+ G+LD+A KL   ++ +PD   + W TLL A R+  
Sbjct: 336 SMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA--VTWRTLLGACRVQR 393

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            + +A  A+ ++I  + + A  Y  LSN YA + +W++V  +R  M+  GI KEPGCSW+
Sbjct: 394 NMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWI 453

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           E+  Q +AF  G+    +  EV   L +L  ++   GYV  +T  V  D+E E  E+ + 
Sbjct: 454 EVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYV-PETNFVLQDLEGEQMEDSLR 512

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595
            HSE+LALAFGL+++P    IRI KNLR+C DCH   KL S +  R+ V+RD  R+HHF+
Sbjct: 513 HHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQ 572

Query: 596 NGSCSCG 602
           +G CSCG
Sbjct: 573 DGKCSCG 579



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 149/280 (53%), Gaps = 18/280 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  +  +  +H  I+K G  S+ +  + LI+ + +L + + A  +FDEM+  + + +
Sbjct: 121 LRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 180

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            S++ G+    +  +AL LF++M        + T  +V++AC+ LA L  G Q H HI  
Sbjct: 181 NSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI-- 238

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
             +  +L++ ++LVDMY KC  ++ ARRVF+ M  R+V++W+++I   AQN    EAL++
Sbjct: 239 VKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 298

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSG-------KVAHGVVVRSGCEFNDVVAS 269
           F E    S  +PN   +  V+ AC+  G L  G       K  +G  +  G E       
Sbjct: 299 F-ELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG--INPGREH----YG 351

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAK 308
            ++D+  K G ++ + K+ N +   P  VT+ +++ GA +
Sbjct: 352 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL-GACR 390



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 163/321 (50%), Gaps = 18/321 (5%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +W +  T++ +IK C     +  G  I  H+   G Q  + + + L++MY K N ++ A 
Sbjct: 9   LWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAH 68

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACA 241
           ++FD M  RNV+SWT++I A+++     +ALE+        RD  RPN +  +SV+ AC 
Sbjct: 69  QLFDQMPQRNVISWTTMISAYSKCKIHQKALELLV---LMLRDGVRPNVYTYSSVLRACN 125

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            +  +   ++ H  +++ G E +  V SAL+D++AK G    +  VF+ +     + + S
Sbjct: 126 GMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 182

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRK 360
           +I G A+      +L+LF  M   G      T   VL AC+   L++ G+Q H+  +   
Sbjct: 183 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 242

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             +I +      +VDM  + G L++A ++   ++   +   + W T++S    +G    A
Sbjct: 243 QDLILN----NALVDMYCKCGSLEDARRVFNQMK---ERDVITWSTMISGLAQNGYSQEA 295

Query: 421 VEASNQLIESNQQVANAYVTL 441
           ++   +L++S+    N Y+T+
Sbjct: 296 LKLF-ELMKSSGTKPN-YITI 314


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 334/576 (57%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  L  L    SV      +G+  + F  + L++ Y R      A ++FD M 
Sbjct: 111 FTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMP 170

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + V++++++AG+++ GQP  A+ ++++M  + V  +E     VI+AC+   ++  G  
Sbjct: 171 RRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGAS 230

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H H+   G + ++V  +SLVDMY K   +D A RVF LM  RN VSW+++I   AQN Q
Sbjct: 231 VHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQ 290

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL +FR     S  +P+   L S + AC+++G L  G+  HG +VR   +FN ++ +
Sbjct: 291 SDEALRLFRNMQ-ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGT 348

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A +DMY+KCGS+  +  +FN IS+  ++ + +MI     +G G+ +L LF EM   G++P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  +L A SHSGLV+EG      M   + I P  KHY C+VD+L R+G ++EA  L
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S++ +P     +W  LLS    + ++++    ++ ++E           +SN YA   
Sbjct: 469 LTSMKAEPTVA--IWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W+ V  +R  MK +G  K PGCS +EIR   +AF   +    +  E++S + +L+ +M+
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY+  +T  V+ D+E+E +E+ +  HSE+LA+AFGL++   G  + I+KNLR+C DCH
Sbjct: 587 KMGYI-PRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCH 645

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K IS I +R+ VVRD  RFHHF++G CSC D+W
Sbjct: 646 DAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 166/331 (50%), Gaps = 7/331 (2%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G P  AL +F + L     P+  TF   + AC+ L DL  G+ +       G++ ++ VC
Sbjct: 88  GSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           SSL+ +Y +   +  A +VFD M  R+ V+W++++       Q  +A++M+R    +   
Sbjct: 147 SSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR-EDGV 205

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           + ++ ++  VI AC +   +  G   HG ++R G   + V A++LVDMYAK G ++ + +
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF  + + + V++++MI G A+ G    +L LF  M + GI+P+    V  L ACS+ G 
Sbjct: 266 VFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGF 325

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G      + R++    +    T  +DM  + G L  A  L   I    D   +LW  
Sbjct: 326 LKLGRSVHGFIVRRFDF--NCILGTAAIDMYSKCGSLASAQMLFNMIS---DRDLILWNA 380

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           +++    HGR   A+    ++ E+  +  +A
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHA 411



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 3/186 (1%)

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           H++      AL +FR     +R  P+       ++ACA LG L  G+        +G + 
Sbjct: 84  HSRRGSPASALRVFRALPPAAR--PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V S+L+ +YA+ G++  + KVF+R+     VT+++M+ G    G    ++ ++  M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G+K ++V  +GV+ AC+ +  V  G      + R +G+  D    T +VDM  + G L
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLL 260

Query: 384 DEAYKL 389
           D A ++
Sbjct: 261 DVACRV 266


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/545 (38%), Positives = 328/545 (60%), Gaps = 8/545 (1%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  T   ++  Y ++K  + AR+ FD M E +VVS+ ++++GY   G  + AL LF +M+
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+E T+ TVI ACS   D      +   +     Q N  V ++L+DMY K  D+D
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLD 312

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR++F+ M  RNVV+W S+I  +AQN Q   A+E+F+E     +  P++  + SVI+AC
Sbjct: 313 SARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             LG L  G      +  +  + +    +A++ MY++CGS+  + +VF  ++   VV+Y 
Sbjct: 373 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYN 432

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           ++I G A +G G  +++L + M   GI+P+ VTF+GVL ACSH+GL++EG +  +S+   
Sbjct: 433 TLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD- 491

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
               P   HY C+VD+LGR G L++A +  + + ++P  G  ++G+LL+ASR+H +V++ 
Sbjct: 492 ----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAG--VYGSLLNASRIHKQVELG 545

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+N+L E     +  ++ LSN YA AG W++V  +R  MK+ G+ K  G SWVE   +
Sbjct: 546 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 605

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F   +   ER  ++  LL EL +KM+E GY+  K+  V  DVE+E +EEIVG HSE+
Sbjct: 606 LHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKS-CVLRDVEEEEKEEIVGTHSEK 664

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+ + L+    G  IR++KNLR+C DCH   K+IS +  R  +VRD NRFH F +G CS
Sbjct: 665 LAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCS 724

Query: 601 CGDFW 605
           C D+W
Sbjct: 725 CKDYW 729



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 181/400 (45%), Gaps = 52/400 (13%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLK-KTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           L  +H++I+ +    + + +  LIN   RL+        LF+  L PNV  +TS++  Y 
Sbjct: 17  LRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYS 76

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
           ++      +L++++M G  V P+ F +  +IK+         G   H H+   G   +  
Sbjct: 77  HLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSDAF 131

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           V ++++DMY +   +  AR+VFD +    R V  W +++  + +     +A  +F     
Sbjct: 132 VRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP- 190

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                                                  E N +  +A+V  YAK   + 
Sbjct: 191 ---------------------------------------ERNVITWTAMVTGYAKVKDLE 211

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + + F+ +   SVV++ +M+ G A+ GL   +L LF+EM++ GI+P++ T+V V+ ACS
Sbjct: 212 AARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACS 271

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G        + ++++K  I  +    T ++DM  + G LD A KL  ++   P    +
Sbjct: 272 SRGDPCLAASLVRTLHQKR-IQLNCFVRTALLDMYAKFGDLDSARKLFNTM---PGRNVV 327

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
            W ++++    +G+  +A+E   ++I + +   +    +S
Sbjct: 328 TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 367


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/560 (38%), Positives = 321/560 (57%), Gaps = 7/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML-EPNVVSYTSLMAGYINMG 107
           +H+ +L SG   +      L++ Y       VAR+LFDEM  + NV  +  L+  Y   G
Sbjct: 85  LHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDG 144

Query: 108 QPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + A+ L+++ML    + P+ FT+  V+KAC+ L DL  G+++H  +    +  ++ VC
Sbjct: 145 PREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVC 204

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+DMY KC  VD A  VFD    R+ V W S+I A  QN +  EAL + R    +   
Sbjct: 205 AGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEG-I 263

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P    L S I+A A  G L  G+  HG   R G    D + ++L+DMYAK G V  +  
Sbjct: 264 APTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARV 323

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSG 345
           +F+++ +  ++++ +MI G   +G    + +LF  M +   + P+ +TFVGVL AC+H G
Sbjct: 324 LFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGG 383

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           +V E  +  D M   Y I P  +HYTC+VD+LG +GR  EA  + K + V PD G  +WG
Sbjct: 384 MVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSG--IWG 441

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL+  ++H  V++A  A ++LIE   + A  YV LSN YA +G+WE    +R  M   G
Sbjct: 442 ALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRG 501

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K   CSW+E++ +++ F  G+A   R  E+   L  LE  + + GYV   T  VF +V
Sbjct: 502 LKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTS-VFHNV 560

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ED+ +  +V  HSERLA+AFGLIS P G  + + KNLR+C DCH V KLIS I +R+ ++
Sbjct: 561 EDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIII 620

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RDVNR+HHF NG CSC D W
Sbjct: 621 RDVNRYHHFVNGECSCKDHW 640



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 152/316 (48%), Gaps = 6/316 (1%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N   +AT++++C +   +  G+Q+H  +   G   + V+ + LVD+Y  C  V  ARR+F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 187 DLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           D M  + NV  W  +I A+A++     A+E++RE        P+      V+ ACA+L  
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L +G+  H  V+R+    +  V + L+DMYAKCG V+ +  VF+  +    V + SMI  
Sbjct: 182 LGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAA 241

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
             + G    +L L   M + GI P  VT V  + A + +G +  G +     +R+ G   
Sbjct: 242 CGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRR-GFGS 300

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             K  T ++DM  ++G +  A  L   +        + W  ++    +HG  D A E   
Sbjct: 301 QDKLKTSLLDMYAKSGWVTVARVLFDQLF---HRELISWNAMICGFGMHGHADHACELFR 357

Query: 426 QLIESNQQVANAYVTL 441
           ++  +  QV   ++T 
Sbjct: 358 RM-RNEAQVMPDHITF 372


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 326/558 (58%), Gaps = 4/558 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           + H +I++     +   LN LIN Y +    ++ARQ+FD MLE ++VS+ +++  Y    
Sbjct: 82  ACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNR 141

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               AL +F +M       +EFT ++V+ AC +  D +  K++H          NL V +
Sbjct: 142 MESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGT 201

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+D+Y KC  +  A +VF+ M  ++ V+W+S++  + QN    EAL ++R     S ++
Sbjct: 202 ALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQ 261

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            NQ  L+SVI AC++L  L+ GK  H V+ +SG   N  VAS+ VDMYAKCGS+  S  +
Sbjct: 262 -NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYII 320

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +   ++  + ++I G AK+   +  + LF +M   G+ PN+VTF  +L  C H+GLV
Sbjct: 321 FSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 380

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG +    M   YG+ P+  HY+C+VD+LGR G L EAY+L KSI  DP     +WG+L
Sbjct: 381 EEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTAS--IWGSL 438

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L++ R++  +++A  A+ +L E   + A  +V LSN YA   +WE +   R  ++   + 
Sbjct: 439 LASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVK 498

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K  G SW++I+D+ + F  G +   R  E+ S L  L  K ++ GY       +  DVE 
Sbjct: 499 KVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELH-DVEI 557

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             +EE++  HSE+LAL FGL+ +P+   +RIMKNLR+C DCH+  K  S    R  +VRD
Sbjct: 558 GKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRD 617

Query: 588 VNRFHHFRNGSCSCGDFW 605
           VNRFHHF +G CSCGDFW
Sbjct: 618 VNRFHHFSDGHCSCGDFW 635



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 23/354 (6%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           FT+N LI C V  +++  +       L  N+    S++A Y    Q +++   +     N
Sbjct: 14  FTVNFLIRCKVLPRRSNTSS------LSRNI----SVLASY---DQEEVSPGRYSNEFSN 60

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
               +E     +++ C+    ++  K  H  I     + ++ + + L++ Y KC  V+ A
Sbjct: 61  RNLVHE-----ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELA 115

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           R+VFD M  R++VSW ++I  + +N    EAL++F E   +   + ++  ++SV++AC  
Sbjct: 116 RQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGF-KFSEFTISSVLSACGV 174

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
               +  K  H + V++  + N  V +AL+D+YAKCG +  + +VF  + + S VT++SM
Sbjct: 175 NCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSM 234

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           + G  +      +L L+       ++ N  T   V+ ACS+   + EG Q + ++  K G
Sbjct: 235 VAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSG 293

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
              +    +  VDM  + G L E+Y +   +Q   +    LW T++S    H R
Sbjct: 294 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ---EKNLELWNTIISGFAKHAR 344



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 9/273 (3%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           ECK L      H   +K+    N +    L++ Y +    + A Q+F+ M + + V+++S
Sbjct: 180 ECKKL------HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSS 233

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++AGY+     + ALLL+++     +  N+FT ++VI ACS LA LI GKQ+H  I   G
Sbjct: 234 MVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSG 293

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F  N+ V SS VDMY KC  +  +  +F  +  +N+  W +II   A++A+  E + +F 
Sbjct: 294 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFE 353

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAK 277
           +   Q    PN+   +S+++ C   G +  G+    ++  + G   N V  S +VD+  +
Sbjct: 354 KMQ-QDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGR 412

Query: 278 CGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKY 309
            G ++ + ++   I  +P+   + S++     Y
Sbjct: 413 AGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 445



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           S +  N++++  ++  CA  G ++  K  HG ++R   E +  + + L++ Y+KCG V  
Sbjct: 55  SNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVEL 114

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + +VF+ +   S+V++ +MI    +  +   +LD+F EM + G K ++ T   VL AC  
Sbjct: 115 ARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGV 174

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +    E  + L  +  K  I  +    T ++D+  + G + +A ++ +S+Q   D   + 
Sbjct: 175 NCDALE-CKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ---DKSSVT 230

Query: 404 WGTLLSASRLHGRVDIAV----EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           W ++++    +   + A+     A    +E NQ   ++ +   +  A   E + +H++
Sbjct: 231 WSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 288


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 335/572 (58%), Gaps = 9/572 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           +  C  +   +++H+ ++KS   S+ F  + L++ Y +L   + A++LFDEM   ++VS+
Sbjct: 72  ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSW 131

Query: 97  TSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
            SLM+G    G     L  F +M   +   PNE T  +V+ AC+ +  L  GK +H  + 
Sbjct: 132 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVV 191

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G      V +SL++MYGK   +D A ++F+ M  R++VSW S++V H  N    + ++
Sbjct: 192 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 251

Query: 216 MFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +F   N   R    P+Q  + +++ AC   G     +  H  + R G   + ++A+AL++
Sbjct: 252 LF---NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 308

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +YAK G +N S+ +F  I +   + +T+M+ G A +  GR ++ LF+ M+  G++ + VT
Sbjct: 309 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 368

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F  +L ACSHSGLV+EG ++ + M   Y + P   HY+C+VD+LGR+GRL++AY+L KS+
Sbjct: 369 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P  G  +WG LL A R++G V++  E + QL+  +      Y+ LSN Y+ AG W +
Sbjct: 429 PMEPSSG--VWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRD 486

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R+ MK   + + PGCS++E  ++ + F  G+ L  R  E+ + L EL RK++E G 
Sbjct: 487 ASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAG- 545

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
              KT  V  D+++E + +++  HSE+LA+AFGL+    G+ + I KNLR+C DCH   K
Sbjct: 546 CAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAK 605

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             S + +R  ++RD  RFHHF +G CSC D+W
Sbjct: 606 FASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 333/567 (58%), Gaps = 22/567 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +K G + + F      + Y + +    AR+LFDE+ E N+ ++ + ++  +  G+
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGR 189

Query: 109 PQIAL---LLFQKMLGNLVWPNEFTFATVIKACS--MLADLITGKQIHTHIETFGFQYNL 163
           P+ A+   + F+++ G    PN  TF   + ACS  +L DL  G Q+H  +   GF  ++
Sbjct: 190 PKEAIEAFIEFRRIGGQ---PNSITFCGFLNACSDGLLLDL--GMQMHGLVFRSGFDTDV 244

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V + L+D YGKC  +  +  +F  MG +N VSW S++ A+ QN +  +A  ++     +
Sbjct: 245 SVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLY----LR 300

Query: 224 SRDR---PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
           SR      +  M++SV++ACA +  L  G+  H   V++  E N  V SALVDMY KCG 
Sbjct: 301 SRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGC 360

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI--KPNDVTFVGVL 338
           +  S++ F+ +   ++VT  S+I G A  G    +L LF +M  RG    PN +TFV +L
Sbjct: 361 IEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLL 420

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACS +G V+ G++  DSM   YGI P A+HY+C+VDMLGR G +++A++  K + + P 
Sbjct: 421 SACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPT 480

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +WG L +A R+HG+  + + A+  L + + + +  +V LSNT+A AG W   +++R
Sbjct: 481 IS--VWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVR 538

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
            EMK  GI K  G SW+ +++Q +AF A +   +   E+ ++L +L  KM+  GY     
Sbjct: 539 EEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGY-KPDL 597

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
            L   D+E+E +   V  HSE+LALAFGL+++P  + IRI KNLR+C DCH  FK +S  
Sbjct: 598 KLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGS 657

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
           V+R+ +VRD NRFH F++G CSC D+W
Sbjct: 658 VKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 200/428 (46%), Gaps = 12/428 (2%)

Query: 49  VHSEILKS-GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ I+K+       F  N+LIN Y +L   + AR +       NVVS+TSL++G    G
Sbjct: 28  VHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNG 87

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               AL  F +M    V PN+FTF  V KA + L   +TGKQIH      G   ++ V  
Sbjct: 88  HFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGC 147

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           S  DMY K    D AR++FD +  RN+ +W + I     + +  EA+E F EF  +   +
Sbjct: 148 SAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFR-RIGGQ 206

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN       +NAC+    L  G   HG+V RSG + +  V + L+D Y KC  +  S+ +
Sbjct: 207 PNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEII 266

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +   + V++ S++    +      +  L+       ++ +D     VL AC+    +
Sbjct: 267 FAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGL 326

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G + + +   K  +  +    + +VDM G+ G ++++ +    +   P+   +   +L
Sbjct: 327 ELG-RSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEM---PEKNLVTLNSL 382

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVT---LSNTYALAGEWENVHSLRSEMKRT 464
           +      G+VD+A+     +       A  Y+T   L +  + AG  EN   +   MK T
Sbjct: 383 IGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKST 442

Query: 465 -GIHKEPG 471
            GI  EPG
Sbjct: 443 YGI--EPG 448



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 16/263 (6%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQ-LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLIN 70
           AS L  ++++    T    I   L  C  +  L    S+H+  +K+    N F  + L++
Sbjct: 294 ASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVD 353

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--GNLVWPNE 128
            Y +    + + Q FDEM E N+V+  SL+ GY + GQ  +AL LF+ M   G    PN 
Sbjct: 354 MYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNY 413

Query: 129 FTFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
            TF +++ ACS    +  G +I   ++ T+G +      S +VDM G+   V+ A     
Sbjct: 414 MTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIK 473

Query: 188 LMGCRNVVS-WTSIIVAHAQNAQGHEA-LEMFREFNYQSRDRPNQHMLASVINACASLGR 245
            M  +  +S W ++  A   + + H   L     F    +D  N  +L+   N  A+ GR
Sbjct: 474 KMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLS---NTFAAAGR 530

Query: 246 LVSGKVAH----GVVVRSGCEFN 264
                       GV ++ G  ++
Sbjct: 531 WAEANTVREEMKGVGIKKGAGYS 553


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 327/566 (57%), Gaps = 18/566 (3%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYV-----RLKKTQVARQLFDEMLEPNVVSYTSLM 100
           L   H+ IL++G L +++    L+  Y      R    + + ++FD + +PNV  +  ++
Sbjct: 71  LKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 130

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
              I   +P  A+LL+ +M+     PN++T+  V+KACS    +  G Q+H H+   G  
Sbjct: 131 KVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLG 190

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +  + SS + MY     +  ARR+ D  G          +    +     EALE+F + 
Sbjct: 191 GDGHILSSAIRMYASFGRLVEARRILDDKGGE-----VDAVCMPDRKGCFMEALEIFHQM 245

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
             + + RP + +L SV++ACA+LG L  G+  H    R+  + + V+ ++LVDMYAKCG 
Sbjct: 246 Q-KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGR 304

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ + +VF ++SN  V ++ +MI G A +G    ++DLF++M    I PN++TFVGVL+A
Sbjct: 305 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNA 361

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+H GLV +G+   +SM ++YG+ P  +HY C+VD+LGR G L EA K+  SI  +P   
Sbjct: 362 CAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT-- 419

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P +WG LL A R HG V++       L+E   Q +  Y  LSN YA AG WE V  +R  
Sbjct: 420 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 479

Query: 461 MKRTGIHKEPGCSWVEI-RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTG 519
           MK  GI   PG S +++ R + + F  G+    +  ++  +L +++ +++  GY    + 
Sbjct: 480 MKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQ 539

Query: 520 LVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIV 579
           ++F D+++E +E  V  HSE+LA+ FGLI+   G TIRI+KNLR+C DCH   KLIS + 
Sbjct: 540 VLF-DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVY 598

Query: 580 ERDFVVRDVNRFHHFRNGSCSCGDFW 605
            R+ +VRD  R+HHFRNG+CSC DFW
Sbjct: 599 NREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 335/572 (58%), Gaps = 9/572 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           +  C  +   +++H+ ++KS   S+ F  + L++ Y +L   + A++LFDEM   ++VS+
Sbjct: 129 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSW 188

Query: 97  TSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
            SLM+G    G     L  F +M   +   PNE T  +V+ AC+ +  L  GK +H  + 
Sbjct: 189 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVV 248

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G      V +SL++MYGK   +D A ++F+ M  R++VSW S++V H  N    + ++
Sbjct: 249 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 308

Query: 216 MFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +F   N   R    P+Q  + +++ AC   G     +  H  + R G   + ++A+AL++
Sbjct: 309 LF---NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 365

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +YAK G +N S+ +F  I +   + +T+M+ G A +  GR ++ LF+ M+  G++ + VT
Sbjct: 366 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 425

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F  +L ACSHSGLV+EG ++ + M   Y + P   HY+C+VD+LGR+GRL++AY+L KS+
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P  G  +WG LL A R++G V++  E + QL+  +      Y+ LSN Y+ AG W +
Sbjct: 486 PMEPSSG--VWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRD 543

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R+ MK   + + PGCS++E  ++ + F  G+ L  R  E+ + L EL RK++E G 
Sbjct: 544 ASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAG- 602

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
              KT  V  D+++E + +++  HSE+LA+AFGL+    G+ + I KNLR+C DCH   K
Sbjct: 603 CAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAK 662

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             S + +R  ++RD  RFHHF +G CSC D+W
Sbjct: 663 FASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 314/573 (54%), Gaps = 35/573 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C  L+    +H    K GF  N F    LI+ Y R   T +AR LFD+M   +
Sbjct: 121 FPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 180

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           + S+ ++++G I  G    AL +  +M    +   +  F TV+                 
Sbjct: 181 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGI---KMNFVTVVS---------------- 221

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                       +    VDMY K   +D A +VF+++  ++V+SW ++I  +AQN    E
Sbjct: 222 ------------ILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE 269

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           A+E+++         PNQ    S++ A A +G L  G   HG V+++    +  VA+ L+
Sbjct: 270 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 329

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           D+Y KCG +  +  +F ++   S VT+ ++I     +G    +L LF EM+  G+KP+ V
Sbjct: 330 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 389

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFV +L ACSHSG V+EG +    + ++YGI P  KHY C+VD+LGR G L+ AY   K 
Sbjct: 390 TFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKD 448

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + PD    +WG LL A R+HG +++   AS++L E + +    YV LSN YA  G+WE
Sbjct: 449 MPLQPDAS--IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWE 506

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +RS  +  G+ K PG S +E+  +   FY GN    +  E+   LR L  KMK  G
Sbjct: 507 GVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLG 566

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y+   +  V  DVE++ +E I+  HSERLA+AFG+IS P    IRI KNLR+C DCH+  
Sbjct: 567 YIPDYS-FVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNAT 625

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS I +R+ VVRD NRFHHF++G CSCGD+W
Sbjct: 626 KFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 188/383 (49%), Gaps = 41/383 (10%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +G + + F    L+N Y  L    ++R  FD++ + +V ++ S+++ Y++ G 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 109 PQIAL-LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
              A+   +Q +L + + P+ +TF  V+KAC  L D   G++IH      GFQ+N+ V +
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 154

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ MY +      AR +FD M  R++ SW ++I    QN    +AL++  E        
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM------- 207

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
                            RL   K+    VV         +    VDMYAK G ++ + KV
Sbjct: 208 -----------------RLEGIKMNFVTVVS--------ILPVFVDMYAKLGLLDSAHKV 242

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGL 346
           F  I    V+++ ++I G A+ GL   +++++  M   + I PN  T+V +L A +H G 
Sbjct: 243 FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 302

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           + +G++ +     K  +  D    TC++D+ G+ GRL +A  L   +   P    + W  
Sbjct: 303 LQQGMK-IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV---PQESSVTWNA 358

Query: 407 LLSASRLHGRVDIAVEASNQLIE 429
           ++S   +HG  +  ++   ++++
Sbjct: 359 IISCHGIHGHAEKTLKLFGEMLD 381



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 143/323 (44%), Gaps = 40/323 (12%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            K +H  +   G   ++ + + LV++Y    DV  +R  FD +  ++V +W S+I A+  
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N   HEA+  F +    S  RP+ +    V+ AC   G LV G+  H    + G ++N  
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVF 151

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA++L+ MY++ G    +  +F+ +    + ++ +MI G  + G    +LD+ +EM   G
Sbjct: 152 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 211

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           IK N VT V +L                                   VDM  + G LD A
Sbjct: 212 IKMNFVTVVSIL--------------------------------PVFVDMYAKLGLLDSA 239

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNT 444
           +K+    ++ P    + W TL++    +G    A+E    + E  + + N   +V++   
Sbjct: 240 HKV---FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 296

Query: 445 YALAGEWENVHSLRSEMKRTGIH 467
           YA  G  +    +   + +T +H
Sbjct: 297 YAHVGALQQGMKIHGRVIKTNLH 319


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 332/572 (58%), Gaps = 9/572 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           +  C  +   +++H+ ++KS   S+ F  + L++ Y +L   + A++LFDEM   ++VS+
Sbjct: 149 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSW 208

Query: 97  TSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
            SLM+G    G     L  F +M   +   PNE T  +V+ AC+ +  L  GK +H  + 
Sbjct: 209 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVV 268

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G      V +SL++MYGK   +D A ++F+ M  R++VSW S++V H  N    + ++
Sbjct: 269 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 328

Query: 216 MFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +F   N   R    P+Q  + +++ AC   G     +  H  + R G   + ++A+AL++
Sbjct: 329 LF---NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 385

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +YAK G +N S+ +F  I +   + +T+M+ G A +  GR ++ LF+ M+  G++ + VT
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F  +L ACSHSGLV+EG ++ + M   Y + P   HY+C+VD+LGR+GRL++AY+L KS+
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            ++P  G  +WG LL A R++G V++  E + QL+  +      Y+ LSN Y+ AG W  
Sbjct: 506 PMEPSSG--VWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRX 563

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  MK   + + PGCS++E  ++ + F  G+ L  R  E+ + L EL RK+ E G 
Sbjct: 564 ASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAG- 622

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
              KT  V  D+++E + +++  HSE+LA+AFGL+    G+ + I KNLR+C DCH   K
Sbjct: 623 CAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAK 682

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             S + +R  ++RD  RFHHF +G CSC D+W
Sbjct: 683 FASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 317/591 (53%), Gaps = 37/591 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ +L  G        + ++  Y        +  +F+ + EP+ + + S++  Y   G 
Sbjct: 92  VHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGF 151

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  +  +  M       + FTF  V+K+   L  +  GK +H  I   G Q++L V +S
Sbjct: 152 AERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATS 211

Query: 169 LVDMYGKCNDVDGARRVFDLM------------------GC-------------RNVVSW 197
           L+ +YGKC +++ A +VFD M                  GC             RN+VSW
Sbjct: 212 LIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSW 271

Query: 198 TSIIVAHAQNAQGHEALEMFREF-NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           T++I  ++Q+    +AL +F E     S  RPN   + SV+ ACA L  L  G+  H + 
Sbjct: 272 TTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELA 331

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRF 314
            R G   N  V  AL  MYAKCGS+  +   F++++    +++ + +MI   A YG G  
Sbjct: 332 CRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQ 391

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           ++  F EMI  GI+P+D+TF G+L  CSHSGLVD G+++ + M   Y I P  +HY CV 
Sbjct: 392 AVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVA 451

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+LGR GRL EA KL   + +    GP +WG+LL+A R H  +++A  A+ +L     + 
Sbjct: 452 DLLGRAGRLAEASKLVGEMPMP--AGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPEN 509

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
              YV LSN YA AG W+ V  LR+ +K  G  K PGCSW+EI  + + F  G+    +G
Sbjct: 510 TGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQG 569

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
            E+   L  L  KMK  GY    T  V  D+ +E +E  +  HSE+LA+AFG+++ P   
Sbjct: 570 KEIYMFLEALPEKMKAAGYFP-DTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAET 628

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R+ KNLR+C DCH     IS+I  R+ +VRD+NRFHHF+ G CSCGD+W
Sbjct: 629 VLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 159/342 (46%), Gaps = 38/342 (11%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P   ++A V +  + L  L  G Q+H H+   G Q   +V S +V  Y    D+D +  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-LASVINACASLG 244
           F+ +G  + + + S+I A+A+       +  +  F+  S      +     V+ +   L 
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATY--FSMHSWGFTGDYFTFPFVLKSSVELL 185

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN--------------- 289
            +  GK  HG+++R G +F+  VA++L+ +Y KCG +N + KVF+               
Sbjct: 186 SVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLA 245

Query: 290 ----------------RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPND 331
                           R+   ++V++T+MI G ++ GL + +L LF+EM+    G++PN 
Sbjct: 246 GYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNW 305

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VT + VL AC+    ++ G Q +  +  + G+  +A     +  M  + G L +A     
Sbjct: 306 VTIMSVLPACAQLSTLERGRQ-IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFD 364

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
            +  + +   + W T+++A   +G    AV    ++I++  Q
Sbjct: 365 KLNRN-EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQ 405



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 10/267 (3%)

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
           A V      L  L  G   H  ++  G +   +V S +V  YA  G ++ S  VFN I  
Sbjct: 74  APVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGE 133

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
           PS + + SMI   A+YG    ++  +  M S G   +  TF  VL +      V  G + 
Sbjct: 134 PSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG-KC 192

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
           +  +  + G+  D    T ++ + G+ G +++A K+  ++ +        W  LL+    
Sbjct: 193 VHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS---WNALLAGYTK 249

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
            G +D A+    ++   N     ++ T+ + Y+ +G  +   SL  EM +      P  +
Sbjct: 250 SGCIDAALAIFERMPWRN---IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRP--N 304

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSL 500
           WV I     A  A  +  ERG ++  L
Sbjct: 305 WVTIMSVLPAC-AQLSTLERGRQIHEL 330


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 334/588 (56%), Gaps = 4/588 (0%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           +  Q  R    T A  +  + E + +     +    LK GF  + + L  LI+ + + + 
Sbjct: 195 MVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCED 254

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              AR LF  + +P++VSY +L++G+   G+ + A+  F+++L +    +  T   +I  
Sbjct: 255 VDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPV 314

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
            S    L     I       G      V ++L  +Y + N++D AR++FD    + V +W
Sbjct: 315 SSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAW 374

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
            ++I  +AQ+     A+ +F+E    +   PN   + S+++ACA LG L  GK  H ++ 
Sbjct: 375 NAMISGYAQSGLTEMAISLFQEM-MTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIK 433

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
               E N  V++AL+DMYAKCG+++ + ++F+  S  + VT+ +MI G   +G G  +L 
Sbjct: 434 SKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALK 493

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LFNEM+  G +P+ VTF+ VL+ACSH+GLV EG +   +M  KY I P A+HY C+VD+L
Sbjct: 494 LFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDIL 553

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G+L++A +  + + V+P  GP +WGTLL A  +H   ++A  AS +L E +      
Sbjct: 554 GRAGQLEKALEFIRKMPVEP--GPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGY 611

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN Y++   +    S+R  +K+  + K PGC+ +E+    + F  G+    + + +
Sbjct: 612 YVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSI 671

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            + L EL  KM+E GY   +T     DVE+E +E +  +HSE+LA+AFGLI+   G  IR
Sbjct: 672 YAKLEELTGKMREMGY-QSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIR 730

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLR+C DCH   K IS I ER  VVRD NRFHHF++G CSCGD+W
Sbjct: 731 IIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 190/380 (50%), Gaps = 5/380 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +  GF SN F  + L++ Y +  +   AR++FD+M + + V + +++ G +    
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCC 184

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              ++ +F+ M+   V  +  T ATV+ A + + ++  G  I       GF ++  V + 
Sbjct: 185 YDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTG 244

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ ++ KC DVD AR +F ++   ++VS+ ++I   + N +   A++ FRE    S  R 
Sbjct: 245 LISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL-LVSGQRV 303

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   +  +I   +  G L       G  V+SG      V++AL  +Y++   ++ + ++F
Sbjct: 304 SSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLF 363

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +  S  +V  + +MI G A+ GL   ++ LF EM++    PN VT   +L AC+  G + 
Sbjct: 364 DESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALS 423

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G + +  + +   +  +    T ++DM  + G + EA +L     +  +   + W T++
Sbjct: 424 FG-KSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQL---FDLTSEKNTVTWNTMI 479

Query: 409 SASRLHGRVDIAVEASNQLI 428
               LHG  D A++  N+++
Sbjct: 480 FGYGLHGYGDEALKLFNEML 499



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 183/390 (46%), Gaps = 18/390 (4%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           LA  H++++++G+  +  T+  L      +  T+ AR LF  + +P++  +  L+ G+ +
Sbjct: 24  LAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGF-S 82

Query: 106 MGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
                 ++  +  +L N    P+ FT+A  I A     D   G  +H H    GF  NL 
Sbjct: 83  FSPDASSISFYTHLLKNTTLSPDNFTYAFAISAS---PDDNLGMCLHAHAVVDGFDSNLF 139

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V S+LVD+Y K + V  AR+VFD M  R+ V W ++I    +N    +++++F++   Q 
Sbjct: 140 VASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQG 199

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             R +   +A+V+ A A +  +  G     + ++ G  F+D V + L+ +++KC  V+ +
Sbjct: 200 V-RLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTA 258

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             +F  I  P +V+Y ++I G +  G    ++  F E++  G + +  T VG++   S  
Sbjct: 259 RLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPF 318

Query: 345 GLVDEGIQHLDSMYR----KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           G +     HL    +    K G I      T +  +  R   +D A +L        +  
Sbjct: 319 GHL-----HLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQL---FDESSEKT 370

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIES 430
              W  ++S     G  ++A+    +++ +
Sbjct: 371 VAAWNAMISGYAQSGLTEMAISLFQEMMTT 400



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 139/311 (44%), Gaps = 20/311 (6%)

Query: 131 FATVIKACSM--LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            A + KAC+   LA      + H  +   G+Q++L   + L            AR +F  
Sbjct: 12  LALISKACTFPHLA------ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFS 65

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA--SLGRL 246
           +   ++  +  +I   + +     ++  +      +   P+    A  I+A    +LG  
Sbjct: 66  VPKPDIFLFNVLIKGFSFSPDA-SSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMC 124

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           +    AH VV   G + N  VASALVD+Y K   V Y+ KVF+++ +   V + +MI G 
Sbjct: 125 LH---AHAVV--DGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGL 179

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
            +      S+ +F +M+++G++ +  T   VL A +    V  G+  +  +  K G   D
Sbjct: 180 VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMG-IQCLALKLGFHFD 238

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
               T ++ +  +   +D A  L   I+  PD   + +  L+S    +G  + AV+   +
Sbjct: 239 DYVLTGLISVFSKCEDVDTARLLFGMIR-KPD--LVSYNALISGFSCNGETECAVKYFRE 295

Query: 427 LIESNQQVANA 437
           L+ S Q+V+++
Sbjct: 296 LLVSGQRVSSS 306


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/598 (36%), Positives = 329/598 (55%), Gaps = 27/598 (4%)

Query: 33  FIQQLQECKHLISLA---SVHSEILK-SGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  L+    +H+ +LK S   +N+F  + L++ Y   ++  VAR++FD +
Sbjct: 274 FASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMV 333

Query: 89  L--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLI 145
                 +  + +++ GY   G  + AL LF +M     V P+E T A V+ AC+      
Sbjct: 334 PGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFA 393

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
             + +H ++   G   N  V ++L+D+Y +  D++ AR +F  +  R+VVSW ++I    
Sbjct: 394 GKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCV 453

Query: 206 QNAQGHEALEMFREFNYQSR-------------DR----PNQHMLASVINACASLGRLVS 248
                H+A ++ RE   Q R             D     PN   L +++  CA L     
Sbjct: 454 VQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAK 513

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  HG  +R   + +  V SALVDMYAKCG +  S  VF+R+   +V+T+  +I+    
Sbjct: 514 GKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGM 573

Query: 309 YGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           +GLG  ++ LF+ M+ S   KPN+VTF+  L ACSHSG+VD G++   SM R +G+ P  
Sbjct: 574 HGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTP 633

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
             + C VD+LGR GRLDEAY +  S++   +     W + L A RLH  V +   A+ +L
Sbjct: 634 DLHACAVDILGRAGRLDEAYSIITSMEPG-EQQVSAWSSFLGACRLHRNVPLGEIAAERL 692

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
            +     A+ YV L N Y+ AG WE    +R+ M++ G+ KEPGCSW+E+    + F AG
Sbjct: 693 FQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAG 752

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
            +     + V + +  L  +M+ +GY    T  V  D+E+  +  I+  HSE+LA+AFGL
Sbjct: 753 ESAHPESTLVHAHMDALWERMRNQGYTP-DTSSVLHDIEESEKAAILRYHSEKLAIAFGL 811

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  P G TIR+ KNLR+C DCH+  K IS +V R+ V+RDV RFHHF +G+CSCGD+W
Sbjct: 812 LRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 214/473 (45%), Gaps = 39/473 (8%)

Query: 33  FIQQLQECKHL---ISLA-SVHSEILKSGFLSNT--FTLNHLINCYVRLKKTQVARQLF- 85
            +  L  C HL   + L    H+  LK+GFL     F  N L++ Y RL     A+ LF 
Sbjct: 165 LVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFG 224

Query: 86  --DEMLEPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
             D    P   VV++ ++++  +  G+   A+ +   M+   V P+  TFA+ + ACS L
Sbjct: 225 SVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQL 284

Query: 142 ADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWT 198
             L  G+++H ++ +      N  V S+LVDMY     V  ARRVFD++  G R +  W 
Sbjct: 285 EMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWN 344

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           +++  +AQ     EALE+F     ++   P++  +A V+ ACA        +  HG V++
Sbjct: 345 AMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLK 404

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   N  V +AL+D+YA+ G +  +  +F  I    VV++ ++I G    G    +  L
Sbjct: 405 RGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQL 464

Query: 319 FNEMISRG------------------IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
             EM  +G                  + PN+VT + +L  C+      +G + +     +
Sbjct: 465 VREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKG-KEIHGYAMR 523

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           + +  D    + +VDM  + G L  +  +   +   P    + W  L+ A  +HG  D A
Sbjct: 524 HALDSDIAVGSALVDMYAKCGCLALSRAVFDRL---PKRNVITWNVLIMAYGMHGLGDEA 580

Query: 421 VEASNQLIESNQQVANAYVTLSNTYAL--AGEWENVHSLRSEMKRT-GIHKEP 470
           +   ++++ SN+   N    ++   A   +G  +    L   MKR  G+   P
Sbjct: 581 IALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTP 633



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 193/409 (47%), Gaps = 27/409 (6%)

Query: 41  KHLISLASVHSEILKSGFLSNTFT---LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYT 97
           + LI++ S+H   L+   L + FT    N L+  Y R      A  LF+ M   + V++ 
Sbjct: 73  RSLIAVRSIHGAALRRDLL-HGFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFN 131

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA-DLITGKQIHTHIET 156
           SL+A      +   AL   + ML      + FT  +V+ ACS LA DL  G++ H     
Sbjct: 132 SLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALK 191

Query: 157 FGF--QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN-----VVSWTSIIVAHAQNAQ 209
            GF         ++L+ MY +   VD A+ +F  +   +     VV+W +++    Q+ +
Sbjct: 192 NGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGR 251

Query: 210 GHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVR-SGCEFNDVV 267
             EA+E+   ++  +R  RP+    AS + AC+ L  L  G+  H  V++ S    N  V
Sbjct: 252 CGEAIEVI--YDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFV 309

Query: 268 ASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
           ASALVDMYA    V  + +VF+ +   +  +  + +M+ G A+ G+   +L+LF  M + 
Sbjct: 310 ASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAE 369

Query: 326 -GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G+ P++ T  GVL AC+ S     G + +     K G+  +      ++D+  R G ++
Sbjct: 370 AGVVPSETTIAGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDME 428

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
            A  +  +I+       + W TL++   + G +  A     QL+   QQ
Sbjct: 429 AARWIFAAIEPR---DVVSWNTLITGCVVQGHIHDAF----QLVREMQQ 470



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 23/347 (6%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           + F      K+ + L  LI  + IH           +   V ++L+  Y +C D+  A  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +F+ M  R+ V++ S+I A     +   AL+  R+   +     +   L SV+ AC+ L 
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL-SSFTLVSVLLACSHLA 176

Query: 245 R-LVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRISNP-----SV 296
             L  G+ AH   +++G    D     +AL+ MYA+ G V+ +  +F  +         V
Sbjct: 177 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGV 236

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           VT+ +M+    + G    ++++  +M++RG++P+ +TF   L ACS   ++  G +    
Sbjct: 237 VTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAY 296

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL--LWGTLLSASRLH 414
           + +   +  ++   + +VDM     R+  A ++   +   P G     LW  ++      
Sbjct: 297 VLKDSDLAANSFVASALVDMYASHERVGVARRVFDMV---PGGHRQLGLWNAMVCGYAQA 353

Query: 415 GRVDIAV------EASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           G  + A+      EA   ++ S   +A      + +   AG+ E VH
Sbjct: 354 GMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGK-EAVH 399



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 7/202 (3%)

Query: 228 PNQHM-LASVINACASLGRLVSGKVAHGVVVRSGC--EFNDVVASALVDMYAKCGSVNYS 284
           P  H  L     + A+L  L++ +  HG  +R      F   VA+AL+  YA+CG +  +
Sbjct: 56  PLDHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAA 115

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             +FN + +   VT+ S+I     +     +LD   +M+  G   +  T V VL ACSH 
Sbjct: 116 LALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHL 175

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYT--CVVDMLGRTGRLDEAYKLAKSIQV--DPDGG 400
                  +   +   K G +   + +    ++ M  R G +D+A  L  S+     P GG
Sbjct: 176 AEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGG 235

Query: 401 PLLWGTLLSASRLHGRVDIAVE 422
            + W T++S     GR   A+E
Sbjct: 236 VVTWNTMVSLLVQSGRCGEAIE 257


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 318/559 (56%), Gaps = 5/559 (0%)

Query: 48   SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
            S+H   +K+   S+  T   L++ Y +      A   F+ M   ++V++ SL+ GY  +G
Sbjct: 451  SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             P  A+ +F K+  + + P+  T   V+ AC++L DL  G  IH  I   GF+ +  V +
Sbjct: 511  DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570

Query: 168  SLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            +L+DMY KC  +  A  +F+     ++ V+W  II A+ QN    EA+  F +   ++  
Sbjct: 571  ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF- 629

Query: 227  RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             PN     SV+ A A L     G   H  +++ G   N +V ++L+DMYAKCG ++YS+K
Sbjct: 630  HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 689

Query: 287  VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            +FN + +   V++ +M+ G A +G G  ++ LF+ M    ++ + V+FV VL AC H+GL
Sbjct: 690  LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGL 749

Query: 347  VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
            V+EG +   SM  KY I PD +HY C+VD+LGR G  DE     K + V+PD G  +WG 
Sbjct: 750  VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAG--VWGA 807

Query: 407  LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            LL + R+H  V +   A + L++   +    +V LS+ YA +G W +    RS+M   G+
Sbjct: 808  LLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGL 867

Query: 467  HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
             K PGCSWVE++++ +AF  G+    +   +  L   L  KM++ GYV  ++  V  +VE
Sbjct: 868  KKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRS-CVLQNVE 926

Query: 527  DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            +E +E  +  HSERLA+ F L++ P G TI+I+KNLR+C DCH   K IS I  R  +VR
Sbjct: 927  EEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVR 986

Query: 587  DVNRFHHFRNGSCSCGDFW 605
            D  RFHHF +G CSC D+W
Sbjct: 987  DATRFHHFEDGICSCNDYW 1005



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 195/387 (50%), Gaps = 6/387 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   L+    S+      L+  Y +  +T+ A+QLF  +   ++V++++++A  +  G 
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ AL LFQ+M    + PN  T  +++ AC+ L+ L  GK IH          +L   ++
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTA 470

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY KC     A   F+ M  R++V+W S+I  +AQ    + A++MF +    + + P
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN-P 529

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   +  V+ ACA L  L  G   HG++V+ G E +  V +AL+DMYAKCGS+  ++ +F
Sbjct: 530 DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 289 NRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           N+       VT+  +I    + G  + ++  F++M      PN VTFV VL A ++    
Sbjct: 590 NKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAF 649

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG+    +   + G + +      ++DM  + G+LD + KL   +        + W  +
Sbjct: 650 REGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD---HKDTVSWNAM 705

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQV 434
           LS   +HG  D A+   + + ES  Q+
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQI 732



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 204/424 (48%), Gaps = 34/424 (8%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           +K  L R+      A+S       S+     H+ + L  CKHL  L  +H++I+ SGF  
Sbjct: 3   IKHQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGF-K 61

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  ++ HLIN Y    K  +AR +FD    P+ + + S++  Y    Q   AL ++  M+
Sbjct: 62  HHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV 121

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+++TF  V+KAC+   +L  G   H  I+  G + ++ + + LVDMY K  D+ 
Sbjct: 122 EKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK 181

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR VFD M  R+VV+W ++I   +Q+    EA++ FR       + P+   L ++    
Sbjct: 182 RAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVE-PSSVSLLNLFPGI 240

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             L  +   +  HG V R   +F+  V++ L+D+Y+KCG V+ + +VF+++ +   V++ 
Sbjct: 241 CKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWG 298

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV---------------LHACSHSG 345
           +M+ G A  G     L+LF++M    ++ N V+ V                 +H C+   
Sbjct: 299 TMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQ 358

Query: 346 LVDEGI---QHLDSMYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLA 390
            +D  I     L  MY K G    AK             ++ ++  L +TG  +EA  L 
Sbjct: 359 RIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLF 418

Query: 391 KSIQ 394
           + +Q
Sbjct: 419 QEMQ 422



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 177/360 (49%), Gaps = 7/360 (1%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F   L+ C   ++L      H EI + G   + F    L++ Y ++   + AR++FD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           +M + +VV++ +++AG      P  A+  F+ M    V P+  +   +      L+++  
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            + IH ++  F   ++  V + L+D+Y KC DVD ARRVFD M  ++ VSW +++  +A 
Sbjct: 249 CRSIHGYV--FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    E LE+F +    +  R N+    S   A A    L  GK  HG  ++   + + +
Sbjct: 307 NGCFVEVLELFDKMKLGNV-RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDIL 365

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA+ L+ MYAKCG    + ++F  +    +V ++++I    + G    +L LF EM ++ 
Sbjct: 366 VATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK 425

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +KPN VT + +L AC+   L+  G + +     K  +  D    T +V M  + G    A
Sbjct: 426 MKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAA 484


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/486 (41%), Positives = 293/486 (60%), Gaps = 14/486 (2%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    +A+++++C     +  GKQ+H  +   GF ++ V+ + LV++Y  C+ +  AR +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR---PNQHMLASVINACAS 242
           FD +   N+  W  +I  +A N     A++++    YQ  D    P+      V+ ACA+
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY----YQMFDYGLVPDNFTFPFVLKACAA 188

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI---SNPSVVTY 299
           L  +  G+  H  VV++G E +  V +AL+DMYAKCG V  + +VF++I       VV++
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSW 248

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G A +G    +LDLF EM +R  KP+ +TFVGVL ACSH GL++EG    ++M R
Sbjct: 249 NAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIR 307

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            Y I P  +HYTC+VD+LG +GRLDEAY L   ++V PD G  +WG LL++ ++H  V++
Sbjct: 308 DYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSG--VWGALLNSCKIHANVEL 365

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
              A  +LIE     A  YV LSN YA AG+WE V  LR  M    + K   CSW+E+++
Sbjct: 366 GEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKN 425

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + +AF +G+       E+ S L  +   MKE GY    TG VF DVED+ +  +V  HSE
Sbjct: 426 KVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGY-SPSTGSVFHDVEDDEKANMVCSHSE 484

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLA+AFGLIS P G  + I KNLR+C DCH   K IS I ER+  VRDVNR+HHF++G C
Sbjct: 485 RLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVC 544

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 545 SCGDYW 550


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 324/557 (58%), Gaps = 17/557 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+++LK+GF  N +  + LI+ Y +  K   A ++F  + E +VVS+T+++AGY    +
Sbjct: 460 IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDK 519

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF++M    +  +   FA+ I AC+ +  L  G+QIH      G+  +L + ++
Sbjct: 520 FTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNA 579

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV +Y +C  V  A   FD +  ++ VSW S++   AQ+    EAL +F + N ++    
Sbjct: 580 LVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMN-KAGLEI 638

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S ++A A++  +  GK  HG++ ++G +    V++AL+ +YAKCG+++      
Sbjct: 639 NSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTID------ 692

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                   +++ SMI G +++G G  +L LF +M    + PN VTFVGVL ACSH GLVD
Sbjct: 693 -------DISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVD 745

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EGI +  SM   + ++P  +HY CVVD+LGR+G L  A +  + + + PD   ++W TLL
Sbjct: 746 EGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDA--MVWRTLL 803

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA  +H  +DI   A++ L+E   + +  YV +SN YA++G+W+     R  MK  G+ K
Sbjct: 804 SACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKK 863

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SWVE+ +  +AF+AG+    R   +   LR L+ +  E GYV  +   +  D E  
Sbjct: 864 EPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYV-PRCNSLLSDAEIR 922

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++    +HSERLA+AFGL+S+     + + KNLR+C DCH+  K +S I +R  +VRD 
Sbjct: 923 QKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDS 982

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF+ GSCSC D+W
Sbjct: 983 YRFHHFKVGSCSCKDYW 999



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 210/425 (49%), Gaps = 27/425 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK GF S T+  N L+  Y R      A Q+F  M + + VSY SL++G    G 
Sbjct: 273 LHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGY 332

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+KM  +   P+  T A+++ AC+ +  L  GKQ H++    G   ++VV  S
Sbjct: 333 INRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGS 392

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC+D+  A   F               + + Q    +++ ++F +   +    P
Sbjct: 393 LLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIEGI-VP 436

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ    S++  C +LG    G+  H  V+++G +FN  V+S L+DMYAK G ++++ K+F
Sbjct: 437 NQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIF 496

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+    VV++T+MI G  ++     +L+LF EM  +GIK +++ F   + AC+    +D
Sbjct: 497 RRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALD 556

Query: 349 EGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +G Q H  S    Y    D      +V +  R G++ EAY     I    +   + W +L
Sbjct: 557 QGRQIHAQSCLSGYS--DDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN---VSWNSL 611

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH---SLRSEMKRT 464
           +S     G  + A+    Q+ ++  ++ N++ T  +  + A    NV     +   +++T
Sbjct: 612 VSGFAQSGYFEEALNIFAQMNKAGLEI-NSF-TFGSAVSAAANIANVRIGKQIHGMIRKT 669

Query: 465 GIHKE 469
           G   E
Sbjct: 670 GYDSE 674



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 174/363 (47%), Gaps = 17/363 (4%)

Query: 23  KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR 82
           ++  C T A  +        L +    HS  +K+G  S+      L++ YV+    + A 
Sbjct: 348 QKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAH 407

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           + F                 Y  +     +  +F +M    + PN+FT+ +++K C+ L 
Sbjct: 408 EFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
               G+QIHT +   GFQ+N+ V S L+DMY K   +D A ++F  +   +VVSWT++I 
Sbjct: 453 ATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIA 512

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
            + Q+ +  EAL +F+E   Q     N    AS I+ACA +  L  G+  H     SG  
Sbjct: 513 GYTQHDKFTEALNLFKEMQDQGIKSDNIG-FASAISACAGIQALDQGRQIHAQSCLSGYS 571

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            +  + +ALV +YA+CG V  +   F++I     V++ S++ G A+ G    +L++F +M
Sbjct: 572 DDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQM 631

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G++ N  TF   + A ++   V  G Q +  M RK G   + +    ++ +  + G 
Sbjct: 632 NKAGLEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLYAKCGT 690

Query: 383 LDE 385
           +D+
Sbjct: 691 IDD 693



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 189/385 (49%), Gaps = 37/385 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++ + SGF S+TF  N LI+ Y +      A+++F+ +   + VS+ ++++G    G 
Sbjct: 186 IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGY 245

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+LLF ++              V+ AC+ +     GKQ+H  +   GF     VC++
Sbjct: 246 EEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNA 291

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV +Y +  ++  A ++F  M  R+ VS+ S+I   AQ    + AL +F++ N   + +P
Sbjct: 292 LVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQ-KP 350

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   +AS+++ACAS+G L +GK  H   +++G   + VV  +L+D+Y KC  +  + + F
Sbjct: 351 DCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                   + Y  +        L + S  +F +M   GI PN  T+  +L  C+  G  D
Sbjct: 411 --------LCYGQLD------NLNK-SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G + + +   K G   +    + ++DM  + G+LD A K+ + ++   +   + W  ++
Sbjct: 456 LG-EQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK---ENDVVSWTAMI 511

Query: 409 SASRLHGRVDIAVEASNQLIESNQQ 433
           +    H   D   EA N   E   Q
Sbjct: 512 AGYTQH---DKFTEALNLFKEMQDQ 533



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 233/512 (45%), Gaps = 60/512 (11%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI+ Y+       A  +FDEM   ++  +  +   +I          LF++ML   V  +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 128 EFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           E  FA V++ CS  A      +QIH    T GF+ +  +C+ L+D+Y K   +  A++VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           + +  R+ VSW ++I   +QN    EA+ +F +                V++AC  +   
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI---------------VLSACTKVEFF 267

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  HG+V++ G      V +ALV +Y++ G+++ ++++F+ +S    V+Y S+I G 
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A+ G    +L LF +M     KP+ VT   +L AC+  G +  G Q   S   K G+  D
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSD 386

Query: 367 AKHYTCVVDM----------------LGRTGRLDEAYKLAKSIQVD---PDGGPLLWGTL 407
                 ++D+                 G+   L++++++   +Q++   P+     + ++
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPN--QFTYPSI 444

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVT--LSNTYALAGEWENVHSLRSEMKRTG 465
           L      G  D+  +   Q++++  Q  N YV+  L + YA  G+ ++   +   +K   
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQF-NVYVSSVLIDMYAKHGKLDHALKIFRRLKEND 503

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER---KMKERGYVGGKTGLVF 522
           +      SW        A  AG    ++ +E L+L +E++    K    G+    +    
Sbjct: 504 V-----VSWT-------AMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAG 551

Query: 523 VDVEDEAR----EEIVGLHSERLALAFGLISI 550
           +   D+ R    +  +  +S+ L++   L+S+
Sbjct: 552 IQALDQGRQIHAQSCLSGYSDDLSIGNALVSL 583


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 321/557 (57%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS + K+GF  + F   +++  Y +    + A ++FD+M+  NVVS+T ++ G I  G+
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGK 185

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ LF+ +L + + P+ F    V++AC+ L DL +G+ I   +   G   N+ V +S
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATS 245

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  ++ AR VFD M  +++V W+++I  +A N    EA+E+F E   +   RP
Sbjct: 246 LVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR-KVNVRP 304

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + +   +++CASLG L  G  A G++       N V+ ++L+D YAKCGS+  +  V+
Sbjct: 305 DCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVY 364

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +     V + ++I G A YG    +  +F +M   GI PN+ TFVG+L  C+H+GLVD
Sbjct: 365 KMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVD 424

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G  + +SM   + + P  +HY C+VD+L R G LDEA+ L K + +  +   ++WG+LL
Sbjct: 425 DGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKAN--VIVWGSLL 482

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              RLH    +A     QLIE     +  YV LSN Y+ +  W+    +RS +   G+ K
Sbjct: 483 GGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQK 542

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SWVE+    + F  G+       ++   L  L + +KE GY    T  V  DVE+E
Sbjct: 543 LPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGY-NPTTEFVLFDVEEE 601

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +G HSE+LA+AF LIS      IR++KNLR+C DCH+  K IS +  R+ V+RD 
Sbjct: 602 EKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDN 661

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F +G+CSC D+W
Sbjct: 662 NRFHCFSDGACSCRDYW 678



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 178/337 (52%), Gaps = 7/337 (2%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N   Y +++ G ++  +   A+ L+  M    + P+ FTF+ V+KAC+ L     G  IH
Sbjct: 68  NTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIH 127

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           + +   GF  ++ V +++V  Y KC  +  A +VFD M  +NVVSWT +I    +  +  
Sbjct: 128 SLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFR 187

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EA+++FR    +S  RP+  ++  V+ ACA LG L SG+     +   G   N  VA++L
Sbjct: 188 EAVDLFRGL-LESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSL 246

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           VDMY KCGS+  +  VF+ +    +V +++MI G A  GL R +++LF EM    ++P+ 
Sbjct: 247 VDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDC 306

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSM-YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
              VG L +C+  G ++ G      M Y ++  + +    T ++D   + G ++EA  + 
Sbjct: 307 YAMVGALSSCASLGALELGNWAKGLMNYEEF--LSNPVLGTSLIDFYAKCGSMEEALGVY 364

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           K ++   +   +++  ++S   ++G+V  A     Q+
Sbjct: 365 KMMK---EKDRVVFNAVISGLAMYGQVGAAFGVFGQM 398


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 326/575 (56%), Gaps = 6/575 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA--RQLFDEMLE 90
            +  ++ C  +  L ++ + ++++    +TF  + LI          VA   ++F     
Sbjct: 10  LVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHH 69

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           PN+  + +++ GY     P  A+ L++ M    + PN +TF  V+KAC  L  L  G+++
Sbjct: 70  PNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQEL 129

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H+ I   G  +   + + L+ +Y  C  +D A  +FD M   +  SW++++  +AQN Q 
Sbjct: 130 HSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQA 189

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            EAL++FRE   ++    +   LASV+  C  LG L  GK  H  + + G + + V+ +A
Sbjct: 190 VEALKLFREMQAENVSS-DAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTA 248

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           LV MY+KCGS++ + KVF  ++   V  +++MI G A +G G  +L LF+ M      PN
Sbjct: 249 LVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPN 308

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            VTF  VL ACSHSGLV++G Q  ++M+ +Y I P  KHY C+VD+  R G +  A+K  
Sbjct: 309 CVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFI 368

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           +++ ++P+   +LW TLL A + HG  D+    S ++++ +      YV +SN YA  G 
Sbjct: 369 QTMPIEPN--VVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGR 426

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W +V  +RS MK     K+ G S +EI    + F  G+       ++  +L ++ RK+K+
Sbjct: 427 WSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQ 486

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            G+V      V  D+++E +E  +GLHSERLA+A+GL+  P G  IRI+KNLR+CRDCH+
Sbjct: 487 VGHVNSTVD-VLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHE 545

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           V KLIS++  R+ +VRD  RFHHFR   CSC D+W
Sbjct: 546 VIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 336/564 (59%), Gaps = 6/564 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L++   VH+  +K    S+T   N L++ Y++ +  + +  +FD M   + +S+T+++  
Sbjct: 382 LLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITC 441

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y    +   AL +F++     +  +     ++++ACS L  ++  KQ+H +    G   +
Sbjct: 442 YAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LD 500

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           LVV + ++D+YG+C +V  + ++F+ +  +++V+WTS+I  +A +   +EAL +F E   
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEM-- 558

Query: 223 QSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           QS D +P+   L S++ A   L  L  GK  HG ++R      + + S+LVDMY+ CGS+
Sbjct: 559 QSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSL 618

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + KVFN +    +V +T+MI     +G G+ ++DLF  M+  G+ P+ V+F+ +L+AC
Sbjct: 619 SGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYAC 678

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHS LV+EG  +LD M   Y + P  +HY CVVD+LGR+G+ +EAY+  KS+ + P    
Sbjct: 679 SHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKS-- 736

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W +LL A R+H   ++AV A+N+L+E        YV +SN +A  G+W N   +R+ +
Sbjct: 737 VVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARI 796

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
              G+ K+P CSW+EI +  + F   +        +   L E+  ++++ G     T  V
Sbjct: 797 SERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSV 856

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             DV +E + +++  HSERLA++FGLI+   G+ +RI KNLR+C DCH+  KL+S + +R
Sbjct: 857 LHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDR 916

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           D VVRD NRFHHF  GSCSCGDFW
Sbjct: 917 DIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 206/397 (51%), Gaps = 10/397 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C  L  L     +H+ +LKSG   N    N L+  Y +  +   A ++F E+ E + 
Sbjct: 273 LQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDY 331

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+ S+++ Y+  G    A+    +ML     P+     ++  A   L  L+ GK++H +
Sbjct: 332 ISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAY 391

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                   +  V ++L+DMY KC  ++ +  VFD M  ++ +SWT+II  +AQ+++  EA
Sbjct: 392 AIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEA 451

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+FRE   +   + +  M+ S++ AC+ L  ++  K  H   +R+G   + VV + ++D
Sbjct: 452 LEIFREAQKEGI-KVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIID 509

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y +CG V +S K+F  +    +VT+TSMI   A  GL   +L LF EM S  ++P+ V 
Sbjct: 510 IYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVA 569

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            V +L A      + +G +    + R+   + +A   + +VDM    G L  A K+  ++
Sbjct: 570 LVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAI-VSSLVDMYSGCGSLSGALKVFNAV 628

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           +       +LW  +++A+ +HG    A++   +++++
Sbjct: 629 KCKD---MVLWTAMINATGMHGHGKQAIDLFKRMLQT 662



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 219/491 (44%), Gaps = 74/491 (15%)

Query: 49  VHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           VH+  + +G L   + F    L+  Y +  +   AR LFD M    V S+ +L+  Y++ 
Sbjct: 80  VHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSS 139

Query: 107 GQPQIALLLFQKM---LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           G    AL +++ M     + V P+  T A+V+KA  +  D   G ++H      G   + 
Sbjct: 140 GSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRST 199

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            V ++L+ MY KC  +D A RVF+LM   R+V SW S+I    QN    +AL++FR    
Sbjct: 200 FVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQ- 258

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           ++    N +    V+  C  L +L  G+  H  +++SG E N +  +AL+ MY KCG V+
Sbjct: 259 RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVD 317

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + +VF  I     +++ SM+    + GL   +++  +EM+  G +P+    V +  A  
Sbjct: 318 SALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVG 377

Query: 343 HSGLVDEG--------IQHLDS----------MYRKYGIIPDAKH------------YTC 372
           H G +  G         Q LDS          MY K   I  + H            +T 
Sbjct: 378 HLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTT 437

Query: 373 VVDMLGRTGRLDEAYKL-----AKSIQVDPDG-GPLLWG-----TLLSASRLH------G 415
           ++    ++ R  EA ++      + I+VDP   G +L       T+L A +LH      G
Sbjct: 438 IITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNG 497

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLS-----------------NTYALAGEWENVHSLR 458
            +D+ V+  N++I+   +    Y +L                  N YA +G       L 
Sbjct: 498 LLDLVVK--NRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLF 555

Query: 459 SEMKRTGIHKE 469
           +EM+ T +  +
Sbjct: 556 AEMQSTDVQPD 566



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 157/325 (48%), Gaps = 11/325 (3%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--NLVVCSSLVDMYGKCNDVDGAR 183
           P +  +  V+   +    +  G Q+H H    G     +  + + L+ MYGKC  V  AR
Sbjct: 56  PPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADAR 115

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACA 241
            +FD M  R V SW ++I A+  +    EAL ++R     +     P+   LASV+ A  
Sbjct: 116 LLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASG 175

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYT 300
             G    G   HG+ V+ G + +  VA+AL+ MYAKCG ++ + +VF  + +   V ++ 
Sbjct: 176 VEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWN 235

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMI G  + G+   +LDLF  M    +  N  T VGVL  C+    ++ G + L +   K
Sbjct: 236 SMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLG-RELHAALLK 294

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
            G   + +    +V M  + GR+D A ++ + I    +   + W ++LS    +G    A
Sbjct: 295 SGSEVNIQCNALLV-MYTKCGRVDSALRVFREID---EKDYISWNSMLSCYVQNGLYAEA 350

Query: 421 VEASNQLIESNQQVANA-YVTLSNT 444
           +E  ++++    Q  +A  V+LS+ 
Sbjct: 351 IEFISEMLRGGFQPDHACIVSLSSA 375


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/555 (40%), Positives = 325/555 (58%), Gaps = 35/555 (6%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N +++ Y++  K   A +LF +M   NV+S+T+++ G     +   AL LF+ ML   + 
Sbjct: 163 NAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIK 222

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
               TF  VI AC+       G Q+H  I   GF Y   V +SL+ +Y  C   + +R+V
Sbjct: 223 STSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKV 282

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F  M    V  WT+++  ++ N +  +AL +F E   ++   PNQ   AS +N+C++LG 
Sbjct: 283 FGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEM-IRNSILPNQSTFASGLNSCSALGT 341

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  GK  HGV V+ G      V ++LV MY+  G+VN +  VF  I   S+V++ S+IVG
Sbjct: 342 LDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVG 401

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL----------VDEGIQHLD 355
            A++G G+++  +F +MI    +P+++TF G+L ACSH G           +  G+ H+D
Sbjct: 402 CAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHID 461

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
              RK       +HYTC+VD+LGR G L EA KL +S+ V P+   ++W  LLSA R+H 
Sbjct: 462 ---RK------IQHYTCMVDILGRCGELKEAEKLIESMVVKPN--EMVWLALLSACRMHS 510

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            VD   +A+  +   + + + AYV LSN YA AG W +V  LR +MK+ GI K+PG SWV
Sbjct: 511 DVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWV 570

Query: 476 EIRDQTYAFYAGNA-----LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAR 530
            IR + + F++G+      +FE+    L  LRE   K+KE GYV      +  DVEDE +
Sbjct: 571 VIRGKKHEFFSGDRPHCLRIFEK----LEFLRE---KLKELGYVPDYRSALH-DVEDEQK 622

Query: 531 EEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNR 590
           EE++  HSERLA+AFGLI+  +G T+ +MKNLR+C DCH V KLIS +V    V+RD  R
Sbjct: 623 EEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTR 682

Query: 591 FHHFRNGSCSCGDFW 605
           FHHF+NG CSCGD+W
Sbjct: 683 FHHFKNGMCSCGDYW 697



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 174/369 (47%), Gaps = 19/369 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +I+ Y R  +   A  LFDEM   +VVS+ S+++G +  G    A+ +F +M    V   
Sbjct: 72  MISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSV--- 128

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
             ++  ++  C     +   +++   +       ++   +++V  Y +   VD A ++F 
Sbjct: 129 -VSWTAMVNGCFRFGMVDQAERLFCQMPV----KDIAAWNAMVHGYLQFGKVDDALKLFK 183

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  +NV+SWT++I    QN +  EAL +F+    +   +        VI ACA+     
Sbjct: 184 QMPRKNVISWTTMICGLDQNERSGEALNLFKNM-LRCCIKSTSRTFTCVITACANAPAFH 242

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G   HG +++SG  + + V ++L+ +YA C     S KVF  + +  V  +T+++ G  
Sbjct: 243 MGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSG-- 300

Query: 308 KYGLGRF---SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
            Y L R    +L++F+EMI   I PN  TF   L++CS  G +D G + +  +  K G+ 
Sbjct: 301 -YSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWG-KEIHGVAVKLGLG 358

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
             A     +V M   +G +++A  +   I        + W +++     HGR   A    
Sbjct: 359 TVAFVGNSLVVMYSDSGNVNDAVSVFIEI---FKKSIVSWNSIIVGCAQHGRGKWAFVIF 415

Query: 425 NQLIESNQQ 433
            Q+I  N++
Sbjct: 416 GQMIRLNKE 424



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 162/350 (46%), Gaps = 53/350 (15%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I+KSGFL   +    LI  Y   K+T+ +R++F EM+   V  +T+L++GY    +
Sbjct: 247 VHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRK 306

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F +M+ N + PN+ TFA+ + +CS L  L  GK+IH      G      V +S
Sbjct: 307 HEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNS 366

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY    +V+ A  VF  +  +++VSW SIIV  AQ+ +G  A  +F +    +++ P
Sbjct: 367 LVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKE-P 425

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA---SALVDMYAKCGSVNYSD 285
           ++     +++AC+  G L  G+      + SG    D      + +VD+  +CG +  ++
Sbjct: 426 DEITFTGLLSACSHCGFLQKGRKLF-YYISSGLNHIDRKIQHYTCMVDILGRCGELKEAE 484

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           K+             SM+V                       KPN++ ++ +L AC    
Sbjct: 485 KLIE-----------SMVV-----------------------KPNEMVWLALLSACRMHS 510

Query: 346 LVDEG------IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            VD G      I +LDS          +  Y  + ++    GR     KL
Sbjct: 511 DVDRGEKAAAAIFNLDS--------KSSAAYVLLSNIYASAGRWSSVSKL 552



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 126/270 (46%), Gaps = 23/270 (8%)

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + ++  Y + N +  A  +FD M  R+VVSW S+I    +      A++MF E       
Sbjct: 70  TKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEM------ 123

Query: 227 RPNQHMLA--SVINACASLGRLVSGKVAHGVVVRSGCEF--NDVVA-SALVDMYAKCGSV 281
            P + +++  +++N C   G +   +       R  C+    D+ A +A+V  Y + G V
Sbjct: 124 -PERSVVSWTAMVNGCFRFGMVDQAE-------RLFCQMPVKDIAAWNAMVHGYLQFGKV 175

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + K+F ++   +V+++T+MI G  +      +L+LF  M+   IK    TF  V+ AC
Sbjct: 176 DDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITAC 235

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +++     G Q +     K G + +      ++ +     R +++ K+   +  +     
Sbjct: 236 ANAPAFHMGTQ-VHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVA-- 292

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            +W  LLS   L+ + + A+   +++I ++
Sbjct: 293 -VWTALLSGYSLNRKHEDALNVFSEMIRNS 321



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF+++ +P V  YT MI G  +      +L+LF+EM  R +    V++  ++  C   G
Sbjct: 56  EVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDV----VSWNSMISGCVECG 111

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +D  ++  D M  +  +      +T +V+   R G +D+A +L   + V        W 
Sbjct: 112 DIDTAVKMFDEMPERSVV-----SWTAMVNGCFRFGMVDQAERLFCQMPVKDIAA---WN 163

Query: 406 TLLSASRLHGRVDIAVEASNQLIESN 431
            ++      G+VD A++   Q+   N
Sbjct: 164 AMVHGYLQFGKVDDALKLFKQMPRKN 189


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/531 (39%), Positives = 323/531 (60%), Gaps = 11/531 (2%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN--LVWPNEFTFATVIKAC 138
           AR+ FDE+ +PN V  T++ +GY+       +L LF+ M+ +      +E        A 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK--CNDVDGARRVFDLMGCRNVVS 196
           + + D      +H  I   GF+ N  V ++++D Y K    D++ AR+VFD M  R+VVS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVS 121

Query: 197 WTSIIVAHAQNAQGHEALEMF-REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           W S+I  +AQN    EA+ ++ +  N     + N   L++V+ ACA  G + +GK  H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           VVR G E N  V +++VDMY+KCG V  + + F +I   +++++++MI G   +G G+ +
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L++F EM   G++PN +TF+ VL ACSH+GL+DEG    ++M +++GI    +HY C+VD
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +LGR G LDEAY L K ++V PD    +WG LLSA R+H  V++A  +  +L E +   +
Sbjct: 302 LLGRAGCLDEAYSLIKEMKVKPDAA--IWGALLSACRIHKNVELAEMSVKRLFELDASNS 359

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV LSN YA AG W++V  +R  +K   I K PG S  E++ + Y FY G+    +  
Sbjct: 360 GYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 419

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI-SIPKGI 554
           E+ S L +L  +M+E GYV   TG V  D+++E +E  + +HSE+LA+AF L+ S+P+ +
Sbjct: 420 EIYSYLEKLLERMQEAGYV-PNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSV 478

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            I I+KNLR+C DCH   K I+ I ER+ ++RD+ RFHHF++G CSC D+W
Sbjct: 479 -IHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C H  ++ +   +H+++++ G   N +    +++ Y +  + ++A + F ++ E N+
Sbjct: 163 LLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 222

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+++++ GY   G+ Q AL +F +M  + + PN  TF +V+ ACS    L  G+  +  
Sbjct: 223 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 282

Query: 154 I-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
           + + FG +  +     +VD+ G+   +D A  +   M  + +   W +++ A
Sbjct: 283 MKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 334


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 336/590 (56%), Gaps = 36/590 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++I+KSG   +      LI+ Y +    + A +LFD + + + V++ ++++       
Sbjct: 30  LHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNL 89

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT--GKQIHTHIETFGFQYNLVVC 166
           P  A  +   +L   + P+ F F+++IKAC+ L  +    GKQ+H       F  + VV 
Sbjct: 90  PHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVK 149

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR- 225
           SSLVDMY K    D  R VFD +   + +SWT++I  +A++ +  EALE+FRE  +++  
Sbjct: 150 SSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLY 209

Query: 226 ------------------------------DRPNQHMLASVINACASLGRLVSGKVAHGV 255
                                            +  +L+SV+ ACA+      GK  H V
Sbjct: 210 AWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCV 269

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           V+  G E    +++ALVDMYAKC  V  +  +F  +    VV++TS+IVG A++GL   +
Sbjct: 270 VITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEA 329

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           L L+++M+  G+KPN+VTFVG+++ACSH GLV +G     SM   +GI P  +HYTC++D
Sbjct: 330 LTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLD 389

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +  R+G LDEA  L +++ V PD     W  LLSA + HG   +AV  ++ L++   +  
Sbjct: 390 LFSRSGHLDEAENLIRTMPVKPDEP--TWAALLSACKHHGNTKMAVRIADHLLDLKPEDP 447

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
           ++Y+ LSN YA AG WENV  +R  M    + K PG S V++  +   F+AG A      
Sbjct: 448 SSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKD 507

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E+L L+ +L+ +M+ RGYV   T  V +D++ + +E  +  HSERLALA+GL+    G T
Sbjct: 508 EILGLMTKLDSEMRRRGYV-PDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTT 566

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IRI+KNLR+C DCH V KLIS I  R+  VRDV R+HHF++G CSC DFW
Sbjct: 567 IRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 3/177 (1%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            K++H  I   G  ++     +L+D YGKC  +  A ++FD +  ++ V+W +++ A   
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG--RLVSGKVAHGVVVRSGCEFN 264
           +   H+A  +     ++   +P+  + +S+I ACA+LG   +  GK  H   + S    +
Sbjct: 87  SNLPHKAFSISLPILHEGL-QPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           DVV S+LVDMYAK    +Y   VF+ I   S +++T+MI G A+ G    +L+LF E
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRE 202



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 11/229 (4%)

Query: 242 SLGR---LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           SLGR    ++ K+ H  +++SG   +      L+D Y KCG +  + K+F+ +     V 
Sbjct: 18  SLGRKNPFIAKKL-HAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVA 76

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHLDSM 357
           + +++       L   +  +   ++  G++P+   F  ++ AC++ G V   + + L + 
Sbjct: 77  WATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHAR 136

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
           +       D    + +VDM  +    D    +  SI    +   + W  ++S     GR 
Sbjct: 137 FLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIF---ELSSISWTAMISGYARSGR- 192

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
              +EA     ES  +   A+  L +    +G   +   L  EM+R G+
Sbjct: 193 --KLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGV 239


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 327/565 (57%), Gaps = 4/565 (0%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           K L+   + H++IL  G  ++  T N LIN Y +      ARQ+FDEM   ++VS+ +++
Sbjct: 78  KLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMI 137

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
                 G+   AL L  +M       +EFT ++V+ AC+    L   + +H         
Sbjct: 138 GSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMD 197

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            N+ V ++L+D+Y KC  +  A  VF+ M  R+VV+W+S+   + QN    +AL +FR+ 
Sbjct: 198 LNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRK- 256

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            +++  + +Q +++SVI ACA L  ++ GK  + ++ +SG   N  VAS+L+DMYAKCG 
Sbjct: 257 AWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGG 316

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  S KVF  +   +VV + +MI G +++      + LF +M   G+ PNDVTFV VL A
Sbjct: 317 IEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSA 376

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C H GLV +G ++ D M +++ + P+  HY+C+VD L R G++ EAY L   +  +    
Sbjct: 377 CGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASAS 436

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +WG+LL++ R HG +++A  A+ +L +     +  Y+ LSN YA  G+W+ V  +R  
Sbjct: 437 --MWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKL 494

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           +K + + KE G SW+EI+D+ + F  G     +  E+ S L E+  ++++ GY   +T  
Sbjct: 495 LKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGY-KVETQH 553

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
               V +  ++E++  HSE+LA   GL+ +P    IRIMKNLR+C DCH   KL S    
Sbjct: 554 DLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFC 613

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           RD +VRD NRFHHF+NG CSCGDFW
Sbjct: 614 RDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 155/284 (54%), Gaps = 7/284 (2%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++K C+    L+ GK  H  I   G + +L+  + L++MY KC  VD AR+VFD M  R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP-NQHMLASVINACASLGRLVSGKVA 252
           +VSW ++I +  QN + +EAL++  +   Q    P ++  ++SV+ ACA+   L   ++ 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQM--QREGTPFSEFTISSVLCACAAKCALSECQLL 187

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H   +++  + N  VA+AL+D+YAKCG +  +  VF  + + SVVT++SM  G  +  + 
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
             +L LF +    G+K +      V+ AC+    + EG Q ++++  K G   +    + 
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-VNALLSKSGFCSNIFVASS 306

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           ++DM  + G ++E+YK+ + ++       +LW  ++S    H R
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVE---KRNVVLWNAMISGLSRHAR 347


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/579 (35%), Positives = 338/579 (58%), Gaps = 10/579 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  I+     K L     +HS +LK GF S    +  L++ Y +  +   A  +F  M
Sbjct: 308 TYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLM 367

Query: 89  L-EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
               NVVS+T+++ G I  G   +A  LF +M  + V PN+FT++T++ A   +A L   
Sbjct: 368 SGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTAS--VASL--P 423

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            QIH  +    ++   +V ++L+  Y K  + + A  +F ++  ++VVSW++++  +AQ 
Sbjct: 424 PQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQA 483

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDV 266
                A  +F +       +PN+  ++SVI+ACAS    V  G+  H + ++  C     
Sbjct: 484 GDSDGATNIFIKMTMHGL-KPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALC 542

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V+SALV MYA+ GS+  +  +F R ++  +V++ SM+ G A++G  + +LD+F +M + G
Sbjct: 543 VSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEG 602

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           I+ + VTF+ V+  C+H+GLV+EG ++ DSM R YGI P  +HY C+VD+  R G+LDEA
Sbjct: 603 IEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEA 662

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L + +      GP++W TLL A ++H  V++   A+ +L+      +  YV LSN Y+
Sbjct: 663 MSLIEGMSF--PAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYS 720

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG+W+    +R  M    + KE GCSW++I+++ ++F A +       ++ + LR +  
Sbjct: 721 AAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTT 780

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           K+K+ GY    T     +V +E +E ++ +HSERLALAFGLI+ P G  + I KNLR+C 
Sbjct: 781 KLKQEGYC-PDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCG 839

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH V K++S I +R+ V+RD +RFHHF +G CSCGDFW
Sbjct: 840 DCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 149/274 (54%), Gaps = 2/274 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y++       R++F+ M + NVV++TSL+ GYI  G     + LF +M    VWPN
Sbjct: 145 LVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPN 204

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
             TFA+V+   +    +  G+++H     FG    + VC+SL++MY KC  V+ AR VF 
Sbjct: 205 SVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 264

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R++VSW +++     N    EAL++F + +  S     Q   A+VI  CA++ +L 
Sbjct: 265 GMETRDMVSWNTLMAGLVLNGHDLEALQLFHD-SRSSITMLTQSTYATVIKLCANIKQLG 323

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGA 306
             +  H  V++ G      V +AL+D Y+K G +  +  +F  +S + +VV++T+MI G 
Sbjct: 324 LARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGC 383

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
            + G    +  LF+ M   G+ PND T+  +L A
Sbjct: 384 IQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 184/386 (47%), Gaps = 21/386 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH++ +K G  S  F  N L+N Y +    + AR +F  M   ++VS+ +LMAG +  G 
Sbjct: 227 VHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGH 286

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF     ++    + T+ATVIK C+ +  L   +Q+H+ +   GF     V ++
Sbjct: 287 DLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTA 346

Query: 169 LVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+D Y K   +  A  +F LM G +NVVSWT++I    QN     A  +F     +    
Sbjct: 347 LMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMR-EDGVA 405

Query: 228 PNQHMLASVINA-CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           PN    ++++ A  ASL   +     H  V+++  E   +V +AL+  Y+K  +   +  
Sbjct: 406 PNDFTYSTILTASVASLPPQI-----HAQVIKTNYECTSIVGTALLASYSKLCNTEEALS 460

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-SHSG 345
           +F  I    VV++++M+   A+ G    + ++F +M   G+KPN+ T   V+ AC S + 
Sbjct: 461 IFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTA 520

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
            VD G Q     +    I        CV    V M  R G ++ A  + +  Q D D   
Sbjct: 521 GVDLGRQ-----FHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFER-QTDRD--L 572

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQL 427
           + W ++LS    HG    A++   Q+
Sbjct: 573 VSWNSMLSGYAQHGYSQKALDVFRQM 598



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 143/313 (45%), Gaps = 10/313 (3%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF---QKMLGNLVWPNEFTFATVIKA 137
           ARQ FDE+   N + +   +  +   G    AL  F    +  G  V         V+K 
Sbjct: 57  ARQAFDEIPHRNTLDHA--LFDHARRGSVHQALDHFLDVHRCHGGRVGGG--ALVGVLKV 112

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLV-VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           C  + D + GKQ+H      G     V V +SLVDMY K + V   R+VF+ M  RNVV+
Sbjct: 113 CGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVT 172

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WTS++  + Q+    + +E+F     +    PN    ASV++  AS G +  G+  H   
Sbjct: 173 WTSLLTGYIQDGALSDVMELFFRMRAEGV-WPNSVTFASVLSVVASQGMVDLGRRVHAQS 231

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           V+ GC     V ++L++MYAKCG V  +  VF  +    +V++ +++ G    G    +L
Sbjct: 232 VKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEAL 291

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            LF++  S        T+  V+  C++   +    Q L S   K G        T ++D 
Sbjct: 292 QLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQ-LHSSVLKRGFHSYGNVMTALMDA 350

Query: 377 LGRTGRLDEAYKL 389
             + G+L  A  +
Sbjct: 351 YSKAGQLGNALDI 363



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           + CS  ++     ND  GAR+ FD +  RN +     +  HA+    H+AL+ F + +  
Sbjct: 39  LACSVPLENQTNLNDATGARQAFDEIPHRNTLD--HALFDHARRGSVHQALDHFLDVHRC 96

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVN 282
              R     L  V+  C S+   V GK  HG+ +R G +  DV V ++LVDMY K  SV 
Sbjct: 97  HGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVV 156

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
              KVF  +   +VVT+TS++ G  + G     ++LF  M + G+ PN VTF  VL   +
Sbjct: 157 DGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVA 216

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G+VD G + + +   K+G          +++M  + G ++EA  +   ++       +
Sbjct: 217 SQGMVDLG-RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRD---MV 272

Query: 403 LWGTLLSASRLHG 415
            W TL++   L+G
Sbjct: 273 SWNTLMAGLVLNG 285


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 323/559 (57%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K+GF++     N LI  +  +     A  +F +M   ++VS+T++++GY   G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ A+  +  M    V P+E T A+V+ AC+ L  L  G  +H   +  G    ++V +S
Sbjct: 378 PEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANS 437

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  +D A  VF  +  +NV+SWTSII+    N +  EAL  F++       +P
Sbjct: 438 LIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSL--KP 495

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L SV++ACA +G L  GK  H   +R+G  F+  + +AL+DMY +CG +  +   F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N      V ++  ++ G A+ G G  +++LF++MI   + P+++TF  +L ACS SG+V 
Sbjct: 556 NSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+++ +SM  K+ I P+ KHY  VVD+LGR GRL++AY+  K + +DPD  P +WG LL
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD--PAIWGALL 672

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R++  V++   A+  + E + +    Y+ L N YA +G+W+ V  +R  M+   +  
Sbjct: 673 NACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTV 732

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSWVE+  Q +AF  G+    +  E+ ++L     KM+  G    K      D  D 
Sbjct: 733 DPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSR--RDDIDA 790

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           ++ EI   HSERLA+AFGLI+   G  I + KNL MC +CH+  K IS +V R   VRD 
Sbjct: 791 SKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDT 850

Query: 589 NRFHHFRNGSCSCGD--FW 605
            +FHHF++G CSCGD  +W
Sbjct: 851 EQFHHFKDGVCSCGDEGYW 869



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 223/435 (51%), Gaps = 12/435 (2%)

Query: 36  QLQECKHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           +L E K   S  S VHS + K+         N L++ +VR      A  +F +M E ++ 
Sbjct: 102 RLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLF 161

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           S+  L+ GY   G    AL L+ +ML   + P+ +TF  V++ C  L DL  G+++H H+
Sbjct: 162 SWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHV 221

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
             +GF+ ++ V ++L+ MY KC D+  AR VFD M  R+ +SW ++I  + +N    E L
Sbjct: 222 IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGL 281

Query: 215 EMF---REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
            +F   REF       P+   + SVI+AC +LG    G+  HG V+++G      V ++L
Sbjct: 282 RLFFMMREFFVD----PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSL 337

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + M++  G  + ++ VF+++    +V++T+MI G  K GL   +++ +  M   G+ P++
Sbjct: 338 IQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDE 397

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T   VL AC+  GL+D+GI  L     + G+         ++DM  +   +D+A ++  
Sbjct: 398 ITIASVLSACAGLGLLDKGIM-LHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFH 456

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            I   P+   + W +++   RL+ R   A+    Q+I S +  +   V++ +  A  G  
Sbjct: 457 RI---PNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGAL 513

Query: 452 ENVHSLRSEMKRTGI 466
                + +   RTG+
Sbjct: 514 SCGKEIHAHALRTGL 528



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 8/344 (2%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G  + AL+    M    V   E T+  +++ C        G ++H+++     +  + + 
Sbjct: 73  GDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLG 132

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+ M+ +  D+  A  VF  M  R++ SW  ++  +A+     EAL ++    +    
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI- 191

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RP+ +    V+  C  L  L  G+  H  V+R G E +  V +AL+ MY KCG +  +  
Sbjct: 192 RPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARL 251

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+R+     +++ +MI G  +  +    L LF  M    + P+ +T   V+ AC   G 
Sbjct: 252 VFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG- 310

Query: 347 VDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            DE + + +     K G + +      ++ M    G  DEA  +   ++       + W 
Sbjct: 311 -DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK---DLVSWT 366

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            ++S    +G  + AVE +  ++E    V +     S   A AG
Sbjct: 367 AMISGYEKNGLPEKAVE-TYTIMEHEGVVPDEITIASVLSACAG 409


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 330/559 (59%), Gaps = 5/559 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH +ILK+ +  +      L+  Y +L     A ++F+EM + +VV ++ ++A +   G
Sbjct: 268 SVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNG 327

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A+ +F +M    V PNEFT ++++  C++      G+Q+H  +   GF  ++ V +
Sbjct: 328 FCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSN 387

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+D+Y KC  +D A ++F  +  +NVVSW ++IV +    +G +AL MFRE   +++  
Sbjct: 388 ALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFRE-ALRNQVS 446

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             +   +S + ACASL  +  G   HG+ +++       V+++L+DMYAKCG +  +  V
Sbjct: 447 VTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTV 506

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN +    V ++ ++I G + +GLGR +L +F+ M     KPN +TF+GVL  CS++GL+
Sbjct: 507 FNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLI 566

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           D+G    +SM   +GI P  +HYTC+V + GR+G+LD+A  L + I  +P    ++W  +
Sbjct: 567 DQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEP--SVMIWRAM 624

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           LSAS      + A  ++ ++++ N +    YV LSN YA A +W NV S+R  MK  G+ 
Sbjct: 625 LSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVK 684

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SW+E +   + F  G++       +  +L  L  K    GYV  +   V +D++D
Sbjct: 685 KEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNA-VLLDMDD 743

Query: 528 EAREEIVGLHSERLALAFGLISIPKGIT-IRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           E +++ + +HSERLALA+GL+ +P     I IMKNLR+C DCH   K+IS IV+RD V+R
Sbjct: 744 EEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIR 803

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D+NRFHHF  G CSC D W
Sbjct: 804 DMNRFHHFHAGVCSCDDHW 822



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 186/368 (50%), Gaps = 7/368 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I+K G+ SN F    LIN Y        AR +F+ +L  ++V +  +++ Y+  G 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +L L  +M  +   PN +TF T +KA   L      K +H  I    ++ +  V   
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +Y +  D+  A +VF+ M   +VV W+ +I    QN   ++A+++F     +    P
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMR-EGFVVP 346

Query: 229 NQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           N+  L+S++N CA +G+    G+  HG+VV+ G + +  V++AL+D+YAKC  ++ + K+
Sbjct: 347 NEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKL 405

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +S+ +VV++ ++IVG    G G  +L++F E +   +   +VTF   L AC+    +
Sbjct: 406 FAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASM 465

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G+Q +  +  K            ++DM  + G +  A  +   ++         W  L
Sbjct: 466 ELGVQ-VHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVAS---WNAL 521

Query: 408 LSASRLHG 415
           +S    HG
Sbjct: 522 ISGYSTHG 529



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 172/379 (45%), Gaps = 9/379 (2%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           A SS+   +    C     +   L+ C      +S  ++H +ILK G   + F  N L+N
Sbjct: 33  AESSVQWSDSVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLN 92

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
            YV+    + A  LFDEM E N VSY +L  GY    Q  + L       G+ + P+ FT
Sbjct: 93  AYVKAGFDKDALNLFDEMPERNNVSYVTLTQGY--ACQDPVGLYSRLHREGHELNPHVFT 150

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
             + +K    L        +H+ I   G+  N  V ++L++ Y  C  VD AR VF+ + 
Sbjct: 151 --SFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGIL 208

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
           C+++V W  I+  + +N    ++L++           PN +   + + A   LG     K
Sbjct: 209 CKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGF-MPNNYTFDTALKASIGLGAFHFAK 267

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG ++++  E +  V   L+ +Y + G ++ + KVFN +    VV ++ MI    + G
Sbjct: 268 SVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNG 327

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
               ++D+F  M    + PN+ T   +L+ C+       G + L  +  K G   D    
Sbjct: 328 FCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLG-EQLHGLVVKVGFDLDVYVS 386

Query: 371 TCVVDMLGRTGRLDEAYKL 389
             ++D+  +  ++D A KL
Sbjct: 387 NALIDVYAKCEKMDTAVKL 405


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 338/585 (57%), Gaps = 9/585 (1%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           QN R  C+    F +     + L     +H+ ILK G  +     ++LIN Y + +    
Sbjct: 23  QNYRQICNLLLSFTRS----RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLF 78

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           + Q+FDE  + +  +++S+++ +     P +AL  F++ML + V P++  + +  KAC  
Sbjct: 79  SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF 138

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L     GK +H      G+  ++ V SSLVDMY KC ++  AR +FD M  RNVVSW+ +
Sbjct: 139 LRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGM 198

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  +AQ   G EAL +F++   +  D  N    +SVI  C+S   L  GK+ HG+ ++  
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVD-VNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMS 257

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            + +  V SAL+ +Y+KCG +  + +VF+ I   ++  + SM++  A++   +    LF 
Sbjct: 258 FDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFE 317

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EM + G+KPN ++F+ VL+ACSH+GLV++G ++  S+ R YGI P+ +HY  +VD+LGR 
Sbjct: 318 EMGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRA 376

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G+L EA  + K + + P     +WG LL+  R+H   ++A   +++++E +   +  +V 
Sbjct: 377 GKLQEAVSVIKQMPMRPTES--VWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVL 434

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA AG +E    +R  ++  G+ KE G SWVE  ++ + F AG+    +  E+   
Sbjct: 435 LSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEK 494

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L ELE +M++ GYV   T  V   V+ E + E +  HSERLA+AFGLI+ P G  IR+MK
Sbjct: 495 LEELEEEMEKAGYV-ADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMK 553

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH   K +S    R  +VRD NRFH F +G CSCGD+W
Sbjct: 554 NLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 346/586 (59%), Gaps = 13/586 (2%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R S  + A  I+     K L     +H  ++K GF+ +      L+  Y +      A +
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 84  LFDEM-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           LF E     NVVS+T++++G++     + A+ LF +M    V PNEFT++ ++ A     
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP--- 412

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
            +I+  ++H  +    ++ +  V ++L+D Y K   VD A +VF  +  +++V+W++++ 
Sbjct: 413 -VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLA 471

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA-SLGRLVSGKVAHGVVVRSGC 261
            +AQ  +   A+++F E   +   +PN+   +S++N CA +   +  GK  HG  ++S  
Sbjct: 472 GYAQAGETEAAIKIFSELT-KGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL 530

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           + +  V+SAL+ MYAK G +  +++VF R     +V++ SMI G A++G    +LD+F E
Sbjct: 531 DSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 590

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M  R +K + VTF+GV  AC+H+GLV+EG ++ D M R   I P  +H +C+VD+  R G
Sbjct: 591 MKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 650

Query: 382 RLDEAYKLAKSIQVDPD-GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           +L++A K+  ++   P+  G  +W T+L+A R+H + ++   A+ ++I    + + AYV 
Sbjct: 651 QLEKAMKVIDNM---PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVL 707

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA +G+W+    +R  M    + KEPG SW+E++++TYAF AG+       ++   
Sbjct: 708 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMK 767

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L +L  ++K+ GY    T  V  D++DE +E ++  HSERLA+AFGLI+ PKG  + I+K
Sbjct: 768 LEDLSTRLKDLGY-EPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIK 826

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF-RNGSCSCGDFW 605
           NLR+C DCH V KLI+ I ER+ VVRD NRFHHF  +G CSCGDFW
Sbjct: 827 NLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 201/385 (52%), Gaps = 19/385 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+G        N LIN Y++    + AR LFD+    +VV++ S+++GY   G 
Sbjct: 220 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 279

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL +F  M  N V  +E +FA++IK C+ L +L   +Q+H  +  +GF ++  + ++
Sbjct: 280 DLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTA 339

Query: 169 LVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+  Y KC  +  A R+F   G   NVVSWT++I    QN    EA+ +F E   +   R
Sbjct: 340 LMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGV-R 398

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN+   + ++ A      ++S    H  VV++  E +  V +AL+D Y K G V+ + KV
Sbjct: 399 PNEFTYSVILTALP----VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKV 454

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SGL 346
           F+ I N  +V +++M+ G A+ G    ++ +F+E+   G+KPN+ TF  +L+ C+  +  
Sbjct: 455 FSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTAS 514

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           + +G Q     +  + I        CV    + M  + G ++ A ++ K  Q + D   +
Sbjct: 515 MGQGKQ-----FHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKR-QREKD--LV 566

Query: 403 LWGTLLSASRLHGRVDIAVEASNQL 427
            W +++S    HG+   A++   ++
Sbjct: 567 SWNSMISGYAQHGQAMKALDVFKEM 591



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 193/382 (50%), Gaps = 10/382 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H + +K GFL +      L++ Y++    +  R +FDEM E NVV++T+L++GY     
Sbjct: 119 LHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSL 178

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L LF +M      PN FTFA  +   +       G Q+HT +   G    + V +S
Sbjct: 179 NEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 238

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+++Y KC +V  AR +FD    ++VV+W S+I  +A N    EAL MF      +  R 
Sbjct: 239 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL-NHVRL 297

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++   AS+I  CA+L  L   +  H  VV+ G  F+  + +AL+  Y+KC ++  + ++F
Sbjct: 298 SESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLF 357

Query: 289 NRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
                  +VV++T+MI G  +      ++ LF+EM  +G++PN+ T+  +L A       
Sbjct: 358 KETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPS 417

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +   Q + + Y +   +      T ++D   + G++DEA K+   I    +   + W  +
Sbjct: 418 EVHAQVVKTNYERSSTVG-----TALLDAYVKLGKVDEAAKVFSGID---NKDIVAWSAM 469

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           L+     G  + A++  ++L +
Sbjct: 470 LAGYAQAGETEAAIKIFSELTK 491



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 175/347 (50%), Gaps = 6/347 (1%)

Query: 66  NHLINCYVRLKKTQV--ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           N  I C+     +++  A  LFD+  + +  SYTSL+ G+   G+ Q A  LF  +    
Sbjct: 33  NFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLG 92

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +  +   F++V+K  + L D + G+Q+H     FGF  ++ V +SLVD Y K ++    R
Sbjct: 93  MEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGR 152

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            VFD M  RNVV+WT++I  +A+N+   E L +F     +   +PN    A+ +   A  
Sbjct: 153 NVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEG-TQPNSFTFAAALGVLAEE 211

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           G    G   H VVV++G +    V+++L+++Y KCG+V  +  +F++    SVVT+ SMI
Sbjct: 212 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
            G A  GL   +L +F  M    ++ ++ +F  ++  C++   +    + L     KYG 
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKEL-RFTEQLHCSVVKYGF 330

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           + D    T ++    +   + +A +L K  +    G  + W  ++S 
Sbjct: 331 VFDQNIRTALMVAYSKCMAMLDALRLFK--ETGFLGNVVSWTAMISG 375


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 327/565 (57%), Gaps = 4/565 (0%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           K L+   + H++IL  G  ++  T N LIN Y +      ARQ+FDEM   ++VS+ +++
Sbjct: 78  KLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMI 137

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
                 G+   AL L  +M       +EFT ++V+ AC+    L   + +H         
Sbjct: 138 GSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMD 197

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            N+ V ++L+D+Y KC  +  A  VF+ M  R+VV+W+S+   + QN    +AL +FR+ 
Sbjct: 198 LNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRK- 256

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            +++  + +Q +++SVI ACA L  ++ GK  + ++ +SG   N  VAS+L+DMYAKCG 
Sbjct: 257 AWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGG 316

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  S KVF  +   +VV + +MI G +++      + LF +M   G+ PNDVTFV VL A
Sbjct: 317 IEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSA 376

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C H GLV +G ++ D M +++ + P+  HY+C+VD L R G++ EAY L   +  +    
Sbjct: 377 CGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASAS 436

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +WG+LL++ R HG +++A  A+ +L +     +  Y+ LSN YA  G+W+ V  +R  
Sbjct: 437 --MWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKL 494

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           +K + + KE G SW+EI+D+ + F  G     +  E+ S L E+  ++++ GY   +T  
Sbjct: 495 LKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGY-KVETQH 553

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
               V +  ++E++  HSE+LA   GL+ +P    IRIMKNLR+C DCH   KL S    
Sbjct: 554 DLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFC 613

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           RD +VRD NRFHHF+NG CSCGDFW
Sbjct: 614 RDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 155/284 (54%), Gaps = 7/284 (2%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++K C+    L+ GK  H  I   G + +L+  + L++MY KC  VD AR+VFD M  R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP-NQHMLASVINACASLGRLVSGKVA 252
           +VSW ++I +  QN + +EAL++  +   Q    P ++  ++SV+ ACA+   L   ++ 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQM--QREGTPFSEFTISSVLCACAAKCALSECQLL 187

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H   +++  + N  VA+AL+D+YAKCG +  +  VF  + + SVVT++SM  G  +  + 
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
             +L LF +    G+K +      V+ AC+    + EG Q ++++  K G   +    + 
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-MNALLSKSGFCSNIFVASS 306

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           ++DM  + G ++E+YK+ + ++       +LW  ++S    H R
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVE---KRNVVLWNAMISGLSRHAR 347


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/564 (35%), Positives = 333/564 (59%), Gaps = 4/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L++   +H+  +K+GF SN    N LI+ Y +        + FD M   +++S+T+  A
Sbjct: 276 YLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAA 335

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY        AL L +++    +  +     +++ AC  L  L   K+IH +    G   
Sbjct: 336 GYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS- 394

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + V+ ++++D+YG+C  +D A R+F+ + C++VVSWTS+I  +  N   ++ALE+F    
Sbjct: 395 DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMK 454

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            ++   P+   L S+++A  SL  L  GK  HG ++R G      +++ LVDMYA+CGSV
Sbjct: 455 -ETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSV 513

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + K+F    N +++ +T+MI     +G G  +++LF  M    I P+ +TF+ +L+AC
Sbjct: 514 EDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGLV+EG   L+ M  +Y + P  +HYTC+VD+LGR   L+EAY++ KS+Q +P   P
Sbjct: 574 SHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPT--P 631

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W  LL A R+H   +I   A+ +L+E +      YV +SN +A  G W++V  +R  M
Sbjct: 632 EVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRM 691

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K +G+ K PGCSW+E+ ++ +AF + + L     ++   L ++  K+K  G    +T  V
Sbjct: 692 KGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFV 751

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             +V +E + +++  HSERLA+A+GL++  +G  IR+ KNLR+C DCH    L+S   ER
Sbjct: 752 LHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFER 811

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + +VRD +RFHHF++G CSCGDFW
Sbjct: 812 ELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 207/393 (52%), Gaps = 9/393 (2%)

Query: 33  FIQQLQECK--HLISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   LQ C+    I L   +H+ ILKSG + + +  N L+  YVR  K   A  +F  + 
Sbjct: 163 FAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE 222

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             ++V++ S++ G+I  G    AL  F  +    + P++ +  ++I A   L  L+ GK+
Sbjct: 223 GKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH +    GF  N++V ++L+DMY KC  +    R FDLM  ++++SWT+    +AQN  
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +ALE+ R+   +  D  +  M+ S++ AC  L  L   K  HG  +R G   + V+ +
Sbjct: 343 YLQALELLRQLQMEGMD-VDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQN 400

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            ++D+Y +CG ++Y+ ++F  I    VV++TSMI      GL   +L++F+ M   G++P
Sbjct: 401 TIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEP 460

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + VT V +L A      + +G +    + RK G I +      +VDM  R G +++AYK+
Sbjct: 461 DYVTLVSILSAVCSLSTLKKGKEIHGFIIRK-GFILEGSISNTLVDMYARCGSVEDAYKI 519

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
                   +   +LW  ++SA  +HG  + AVE
Sbjct: 520 ---FTCTKNRNLILWTAMISAYGMHGYGEAAVE 549



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 204/398 (51%), Gaps = 13/398 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN-VVSYTSLMAGYIN 105
           A +H   +K G  S  F +N L+  Y +      AR+LFD M   N VVS+ S+++ Y  
Sbjct: 78  AEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSG 137

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    AL LF +ML   V  N +TFA  ++AC   + +  G QIH  I   G   ++ V
Sbjct: 138 NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYV 197

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LV MY +   +  A  +F  +  +++V+W S++    QN    EALE F  ++ Q+ 
Sbjct: 198 ANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF--YDLQNA 255

Query: 226 D-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
           D +P+Q  + S+I A   LG L++GK  H   +++G + N +V + L+DMYAKC  ++Y 
Sbjct: 256 DLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYG 315

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG-VLHACSH 343
            + F+ +++  ++++T+   G A+      +L+L  ++   G+   D T +G +L AC  
Sbjct: 316 GRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV-DATMIGSILLAC-- 372

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            GL   G       Y   G + D      ++D+ G  G +D A ++ +SI+       + 
Sbjct: 373 RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKD---VVS 429

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           W +++S    +G  + A+E  + + E+  +    YVTL
Sbjct: 430 WTSMISCYVHNGLANKALEVFSSMKETGLE--PDYVTL 465



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 152/271 (56%), Gaps = 2/271 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +FD+M E ++ ++ ++M GY++ G+   AL ++++M    V  + +TF  ++KAC +
Sbjct: 11  AEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGI 70

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN-VVSWTS 199
           + DL  G +IH     +G    + V +SLV +Y KCND++GAR++FD M  RN VVSW S
Sbjct: 71  VEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNS 130

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           II A++ N    EAL +F E   ++    N +  A+ + AC     +  G   H  +++S
Sbjct: 131 IISAYSGNGMCTEALCLFSEM-LKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G   +  VA+ALV MY + G +  +  +F  +    +VT+ SM+ G  + GL   +L+ F
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF 249

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
            ++ +  +KP+ V+ + ++ A    G +  G
Sbjct: 250 YDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 3/216 (1%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MYGKC  V  A  +FD M  R++ +W +++  +  N +   ALEM+RE  +      + +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSF-DSY 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
               ++ AC  +  L  G   HG+ ++ GC+    V ++LV +YAKC  +N + K+F+R+
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 292 S-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
                VV++ S+I   +  G+   +L LF+EM+  G+  N  TF   L AC  S  +  G
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +Q + +   K G + D      +V M  R G++ EA
Sbjct: 180 MQ-IHAAILKSGRVLDVYVANALVAMYVRFGKMPEA 214



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCGSV  ++ +F+++S  S+ T+ +M+ G    G    +L+++ EM   G+  +  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 334 FVGVLHACSHSGLVDEGI--QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           F  +L AC   G+V++      +  +  KYG          +V +  +   ++ A KL  
Sbjct: 61  FPVLLKAC---GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + V  D   + W +++SA   +G    A+   ++++++          ++NTY  A 
Sbjct: 118 RMYVRND--VVSWNSIISAYSGNGMCTEALCLFSEMLKAG--------VVTNTYTFAA 165


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/612 (34%), Positives = 338/612 (55%), Gaps = 46/612 (7%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY--VRLKKTQVARQLFDEMLEPNVV 94
            Q C     +  +H+  LK+   ++ F  + L+  Y   ++     AR +FD +   +++
Sbjct: 23  FQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLI 82

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            + +++  Y+        ++LF +++   + P+ FT   VIK C+ L  +  GKQIH   
Sbjct: 83  HWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLA 141

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-----------NVVSWTSIIVA 203
              GF  ++ V  SLV+MY KC ++D AR+VFD M  +           N+VSW ++I  
Sbjct: 142 LKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMING 201

Query: 204 HAQNAQGHEALEMF-----------------REFNYQSRD-------------RPNQHML 233
           + ++     ALE+F                  E N Q  D             RP+   L
Sbjct: 202 YMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATL 261

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            SV++A + L  L  G+  H  + ++G E + ++ ++L++MYAKCG +  +  VF  I  
Sbjct: 262 VSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQK 321

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
             V  +T++IVG   +G+   +L LF EM   G+KPN + F+GVL+AC+H+GLVD+G Q+
Sbjct: 322 KKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQY 381

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            D M  +Y I P  +HY C+VD+L R G L+EA    +++ + P+   ++W +LL  SR 
Sbjct: 382 FDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPN--KVIWMSLLGGSRN 439

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           HG++DI   A+ ++IE   +    Y+ LSN YA +G WE V  +R  M + G  K+PGCS
Sbjct: 440 HGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 499

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
            VE +   + F  G+    +  E+ + + E++ K+K  G+V   T ++     ++ +E  
Sbjct: 500 SVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAE 559

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           +  HSERLA+AFGLI++  GI IRIMKNLR+C DCH V KL+S I  R+ +VRD  RFHH
Sbjct: 560 LENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHH 619

Query: 594 FRNGSCSCGDFW 605
           F+NGSCSC D+W
Sbjct: 620 FKNGSCSCMDYW 631


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/555 (36%), Positives = 321/555 (57%), Gaps = 7/555 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K+GF++     N LI  +  +     A  +F +M   ++VS+T++++GY   G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ A+  +  M    V P+E T A+V+ AC+ L  L  G  +H   +  G    ++V +S
Sbjct: 378 PEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANS 437

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  +D A  VF  +  +NV+SWTSII+    N +  EAL  F++       +P
Sbjct: 438 LIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSL--KP 495

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L SV++ACA +G L  GK  H   +R+G  F+  + +AL+DMY +CG +  +   F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N      V ++  ++ G A+ G G  +++LF++MI   + P+++TF  +L ACS SG+V 
Sbjct: 556 NSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+++ +SM  K+ I P+ KHY  VVD+LGR GRL++AY+  K + +DPD  P +WG LL
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD--PAIWGALL 672

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R++  V++   A+  + E + +    Y+ L N YA +G+W+ V  +R  M+   +  
Sbjct: 673 NACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTV 732

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSWVE+  Q +AF  G+    +  E+ ++L     KM+  G    K      D  D 
Sbjct: 733 DPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSR--RDDIDA 790

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           ++ EI   HSERLA+AFGLI+   G  I + KNL MC +CH+  K IS +V R   VRD 
Sbjct: 791 SKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDT 850

Query: 589 NRFHHFRNGSCSCGD 603
            +FHHF++G CSCGD
Sbjct: 851 EQFHHFKDGVCSCGD 865



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 223/435 (51%), Gaps = 12/435 (2%)

Query: 36  QLQECKHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           +L E K   S  S VHS + K+         N L++ +VR      A  +F +M E ++ 
Sbjct: 102 RLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLF 161

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           S+  L+ GY   G    AL L+ +ML   + P+ +TF  V++ C  L DL  G+++H H+
Sbjct: 162 SWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHV 221

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
             +GF+ ++ V ++L+ MY KC D+  AR VFD M  R+ +SW ++I  + +N    E L
Sbjct: 222 IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGL 281

Query: 215 EMF---REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
            +F   REF       P+   + SVI+AC +LG    G+  HG V+++G      V ++L
Sbjct: 282 RLFFMMREFFVD----PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSL 337

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + M++  G  + ++ VF+++    +V++T+MI G  K GL   +++ +  M   G+ P++
Sbjct: 338 IQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDE 397

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T   VL AC+  GL+D+GI  L     + G+         ++DM  +   +D+A ++  
Sbjct: 398 ITIASVLSACAGLGLLDKGIM-LHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFH 456

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            I   P+   + W +++   RL+ R   A+    Q+I S +  +   V++ +  A  G  
Sbjct: 457 RI---PNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGAL 513

Query: 452 ENVHSLRSEMKRTGI 466
                + +   RTG+
Sbjct: 514 SCGKEIHAHALRTGL 528



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 8/344 (2%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G  + AL+    M    V   E T+  +++ C        G ++H+++     +  + + 
Sbjct: 73  GDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLG 132

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+ M+ +  D+  A  VF  M  R++ SW  ++  +A+     EAL ++    +    
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI- 191

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RP+ +    V+  C  L  L  G+  H  V+R G E +  V +AL+ MY KCG +  +  
Sbjct: 192 RPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARL 251

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+R+     +++ +MI G  +  +    L LF  M    + P+ +T   V+ AC   G 
Sbjct: 252 VFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG- 310

Query: 347 VDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            DE + + +     K G + +      ++ M    G  DEA  +   ++       + W 
Sbjct: 311 -DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK---DLVSWT 366

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            ++S    +G  + AVE +  ++E    V +     S   A AG
Sbjct: 367 AMISGYEKNGLPEKAVE-TYTIMEHEGVVPDEITIASVLSACAG 409


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/636 (35%), Positives = 345/636 (54%), Gaps = 71/636 (11%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKT-QVARQLFDEMLEPNVV 94
           L  CK L +   +H+ +LK G  S+ F    L++ C + L  +   A +LF     P+V 
Sbjct: 12  LNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVF 71

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            + +L+ G     +PQ +LL F +M  N    P+ F+FA ++KA + L  +  G Q+H  
Sbjct: 72  MHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQ 131

Query: 154 IETFGFQYNLVVCSSLVDMYGKCN-------------------------------DVDGA 182
               G   +L V ++L+ MYG+C                                D+ G 
Sbjct: 132 ALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGG 191

Query: 183 RRVFDLMGCRNV-------------------------------VSWTSIIVAHAQNAQGH 211
           R +FDLM  RN+                               VSW+++IV  A N    
Sbjct: 192 RELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFE 251

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EA   FRE   +   RPN+  L  V++ACA  G L  GK+ HG + +SG  +   V +AL
Sbjct: 252 EAFSFFRELQRKGM-RPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNAL 310

Query: 272 VDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           +D Y+KCG+V  +  VF RI N  ++V++TSM+   A +G G  ++ +F++M   GI+P+
Sbjct: 311 LDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPD 370

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           ++ F+ +L+ACSH+GLV++G ++ D M   Y I P  +HY C+VD+ GR G+L +AY+  
Sbjct: 371 EIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFV 430

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
              Q+      ++W TLL A  +HG V +A +   +L E +   ++ +V LSN YA+AG+
Sbjct: 431 --CQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGK 488

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK- 509
           W++  S+R  M    I K PG S +E+    Y F AG   ++   E    L+E+ R+++ 
Sbjct: 489 WKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRV 548

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GYV  + G V  D+E+E +E  V +HSE+LA+AFG+  + KG TIRI+KNLR+CRDCH
Sbjct: 549 EGGYVP-EIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCH 607

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            V KLIS I + + VVRD +RFH F++G CSC D+W
Sbjct: 608 AVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/597 (33%), Positives = 340/597 (56%), Gaps = 6/597 (1%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           ++ A  + T   +R    T    +++  + K L+    VHS ++K G+ S+    N LI 
Sbjct: 8   WSAANGNRTVDERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIE 67

Query: 71  CYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
            Y +      AR +FD++ E N  V+S+  ++  Y   G  + AL LF+ M    V  N+
Sbjct: 68  MYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQ 127

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            T    I AC+ L     G+ +H        + + +V +SLV+M+GKC +VD AR VFD 
Sbjct: 128 VTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDS 187

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           +  +N+V+W +++  ++QN Q  +A+++FR  + +   +P+     ++I+ACA+L     
Sbjct: 188 LPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGV-QPDAVTFLTIIDACAALAAHTE 246

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G++ H  +  SG   +  + +A++  Y KCG ++ +  +F+ +   + VT+++++   A+
Sbjct: 247 GRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQ 306

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            G    +++L++EM+  G++ N +TF+G+L ACSH+G   +G+ +  SM R +G++P  +
Sbjct: 307 NGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFE 366

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           HY  ++D+LGR+G+L  +  L  S+  +PD     W  LL A R+HG VD     +  + 
Sbjct: 367 HYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSA--WLALLGACRMHGDVDRGARIAELIY 424

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
           E + + +  Y+ LSN Y+  G  +     R  M+  GI K+PG S +E++D+ + F A  
Sbjct: 425 ELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQ 484

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
            L  +   + + +  L+ ++KE GYV      V  DVE+E +E+++  HSERLA+AFGLI
Sbjct: 485 KLHPQLGRIHAEIERLKARVKEAGYV-ADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLI 543

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S P G  + I+KNLR+C DCH   K IS +V R  VVRD  RFHHF NG+CSCGD+W
Sbjct: 544 STPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 330/587 (56%), Gaps = 34/587 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++K GF S     + L+  Y  +     A+++F  + + N V Y SLM G +  G 
Sbjct: 161 IHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGM 220

Query: 109 PQIALLLFQKMLGNLV-WP-----------------------------NEFTFATVIKAC 138
            + AL LF+ M  + V W                              +++ F +V+ AC
Sbjct: 221 IEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPAC 280

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
             L  +  GKQIH  I    FQ ++ V S+L+DMY KC  +  A+ VFD M  +NVVSWT
Sbjct: 281 GGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWT 340

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           +++V + Q  +  EA+++F +      D P+ + L   I+ACA++  L  G   HG  + 
Sbjct: 341 AMVVGYGQTGRAEEAVKIFLDMQRSGID-PDHYTLGQAISACANVSSLEEGSQFHGKAIT 399

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           SG      V+++LV +Y KCG ++ S ++FN ++    V++T+M+   A++G    ++ L
Sbjct: 400 SGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQL 459

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F++M+  G+KP+ VT  GV+ ACS +GLV++G ++   M  +YGI+P   HY+C++D+  
Sbjct: 460 FDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFS 519

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R+GRL+EA +    +   PD   + W TLLSA R  G ++I   A+  LIE +      Y
Sbjct: 520 RSGRLEEAMRFINGMPFPPDA--IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 577

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
             LS+ YA  G+W++V  LR  M+   + KEPG SW++ + + ++F A +       ++ 
Sbjct: 578 TLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIY 637

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           + L EL  K+ + GY    T  V  DVE+  + +++  HSERLA+AFGLI +P G  IR+
Sbjct: 638 AKLEELNNKIIDNGY-KPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRV 696

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KNLR+C DCH+  K IS +  R+ +VRD  RFH F++G+CSCGDFW
Sbjct: 697 GKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 201/447 (44%), Gaps = 75/447 (16%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+++     TF  N++++ Y  +K +  AR++FD + +PN+ S+ +L+  Y   G 
Sbjct: 28  IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87

Query: 109 PQIALLLFQKM----------------LGNLVWP----------------NEFTFATVIK 136
                  F+K+                L  LV                     T  T++K
Sbjct: 88  ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF---------- 186
             S    +  GKQIH  +   GF+  L+V S L+ MY     +  A++VF          
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207

Query: 187 ------DLMGC--------------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
                  L+ C              ++ VSW ++I   AQN    EA+E FRE   Q   
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGL- 266

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           + +Q+   SV+ AC  LG +  GK  H  ++R+  + +  V SAL+DMY KC  ++Y+  
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKT 326

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+R+   +VV++T+M+VG  + G    ++ +F +M   GI P+  T    + AC++   
Sbjct: 327 VFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSS 386

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           ++EG     S +    I     HY  V    V + G+ G +D++ +L   + V      +
Sbjct: 387 LEEG-----SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRD---AV 438

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIE 429
            W  ++SA    GR    ++  +++++
Sbjct: 439 SWTAMVSAYAQFGRAVETIQLFDKMVQ 465



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 187/474 (39%), Gaps = 108/474 (22%)

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           Q +   ++   ++  L +P  F +  ++ A +++      +++   I     Q NL   +
Sbjct: 21  QSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIP----QPNLFSWN 76

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+  Y K   +      F+ +  R+ V+W  +I  ++ +     A++ +          
Sbjct: 77  NLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSAN 136

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
             +  L +++   +S G +  GK  HG V++ G E   +V S L+ MYA  G ++ + KV
Sbjct: 137 LTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKV 196

Query: 288 FNRISNPSVVTYTS------------------------------MIVGAAKYGLGRFSLD 317
           F  + + + V Y S                              MI G A+ GL + +++
Sbjct: 197 FYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIE 256

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ------------------HLDSMYR 359
            F EM  +G+K +   F  VL AC   G ++EG Q                   L  MY 
Sbjct: 257 CFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYC 316

Query: 360 KYGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLW 404
           K   +  AK             +T +V   G+TGR +EA K+   +Q   +DPD   L  
Sbjct: 317 KCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTL-- 374

Query: 405 GTLLSA----------SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT----YALAGE 450
           G  +SA          S+ HG+       ++ LI         YVT+SN+    Y   G+
Sbjct: 375 GQAISACANVSSLEEGSQFHGKA-----ITSGLIH--------YVTVSNSLVTLYGKCGD 421

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
            ++   L +EM     +     SW        A  +  A F R  E + L  ++
Sbjct: 422 IDDSTRLFNEM-----NVRDAVSWT-------AMVSAYAQFGRAVETIQLFDKM 463


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 316/559 (56%), Gaps = 5/559 (0%)

Query: 48   SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
            S+H   +K+   S+  T   L++ Y +      A   F+ M   ++V++ SL+ GY  +G
Sbjct: 451  SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             P  A+ +F K+  + + P+  T   V+ AC++L DL  G  IH  I   GF+ +  V +
Sbjct: 511  DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570

Query: 168  SLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            +L+DMY KC  +  A  +F+     ++ V+W  II A+ QN    EA+  F +   ++  
Sbjct: 571  ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF- 629

Query: 227  RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             PN     SV+ A A L     G   H  +++ G   N +V ++L+DMYAKCG + YS+K
Sbjct: 630  HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEK 689

Query: 287  VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            +FN + +   V++ +M+ G A +G G  ++ LF+ M    ++ + V+FV VL AC H GL
Sbjct: 690  LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGL 749

Query: 347  VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
            V+EG +   SM  KY I PD +HY C+VD+LGR G  DE     K + V+PD G  +WG 
Sbjct: 750  VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAG--VWGA 807

Query: 407  LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            LL + R+H  V +   A + L++   +    +V LS+ YA +G W +    RS+M   G+
Sbjct: 808  LLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGL 867

Query: 467  HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
             K PGCSWVE++++ +AF  G+    +   +  L   L  KM++ GYV  ++  V  +VE
Sbjct: 868  KKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRS-CVLQNVE 926

Query: 527  DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            +E +E  +  HSERLA+ F L++ P G TI+I+KNLR+C DCH   K IS I  R  +VR
Sbjct: 927  EEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVR 986

Query: 587  DVNRFHHFRNGSCSCGDFW 605
            D  RFHHF +G CSC D+W
Sbjct: 987  DATRFHHFEDGICSCNDYW 1005



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 194/387 (50%), Gaps = 6/387 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   L+    S+      L+  Y +  +T+ A+QLF  +   ++V++++++A  +  G 
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ AL LFQ+M    + PN  T  +++ AC+ L+ L  GK IH          +L   ++
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTA 470

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY KC     A   F+ M  R++V+W S+I  +AQ    + A++MF +    + + P
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN-P 529

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   +  V+ ACA L  L  G   HG++V+ G E +  V +AL+DMYAKCGS+  ++ +F
Sbjct: 530 DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 289 NRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           N+       VT+  +I    + G  + ++  F++M      PN VTFV VL A ++    
Sbjct: 590 NKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAF 649

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG+    +   + G + +      ++DM  + G+L  + KL   +        + W  +
Sbjct: 650 REGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD---HKDTVSWNAM 705

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQV 434
           LS   +HG  D A+   + + ES  Q+
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQI 732



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 194/393 (49%), Gaps = 34/393 (8%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H+ + L  CKHL  L  +H++I+ SGF  +  ++ HLIN Y    K  +AR +FD    P
Sbjct: 34  HYPRLLSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNP 92

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           + + + S++  Y    Q   AL ++  M+   + P+++TF  V+KAC+   +L  G   H
Sbjct: 93  SRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFH 152

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             I+  G + ++ + + LVDMY K  D+  AR VFD M  R+VV+W ++I   +Q+    
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPC 212

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EA++ FR       + P+   L ++      L  +   +  HG V R   +F+  V++ L
Sbjct: 213 EAVDFFRSMQLVGVE-PSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGL 269

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +D+Y+KCG V+ + +VF+++ +   V++ +M+ G A  G     L+LF++M    ++ N 
Sbjct: 270 IDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINK 329

Query: 332 VTFVGV---------------LHACSHSGLVDEGI---QHLDSMYRKYGIIPDAKH---- 369
           V+ V                 +H C+    +D  I     L  MY K G    AK     
Sbjct: 330 VSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWG 389

Query: 370 --------YTCVVDMLGRTGRLDEAYKLAKSIQ 394
                   ++ ++  L +TG  +EA  L + +Q
Sbjct: 390 LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ 422



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 177/360 (49%), Gaps = 7/360 (1%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F   L+ C   ++L      H EI + G   + F    L++ Y ++   + AR++FD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           +M + +VV++ +++AG      P  A+  F+ M    V P+  +   +      L+++  
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            + IH ++  F   ++  V + L+D+Y KC DVD ARRVFD M  ++ VSW +++  +A 
Sbjct: 249 CRSIHGYV--FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    E LE+F +    +  R N+    S   A A    L  GK  HG  ++   + + +
Sbjct: 307 NGCFVEVLELFDKMKLGNV-RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDIL 365

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA+ L+ MYAKCG    + ++F  +    +V ++++I    + G    +L LF EM ++ 
Sbjct: 366 VATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK 425

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +KPN VT + +L AC+   L+  G + +     K  +  D    T +V M  + G    A
Sbjct: 426 MKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAA 484


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/549 (39%), Positives = 321/549 (58%), Gaps = 8/549 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           +SN F  + L++ Y +  K + AR + D+++  +VV +T+L+ GY + G+   +L +F+ 
Sbjct: 209 VSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRN 268

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M    +  NE+T ++V+  C  L DL +G+ IH  I   G +  +   +SL+ MY +C  
Sbjct: 269 MTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGL 328

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD + +VF      N V+WTS+IV   QN +   AL  FR+   +S   PN   L+SV+ 
Sbjct: 329 VDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQM-LRSSITPNSFTLSSVLR 387

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC+SL  L  GK  H +V++ G + +  V +AL+D Y KCGS   +  VFN +    VV+
Sbjct: 388 ACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVS 447

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
             SMI   A+ G G  +L LF+ M   G++PN+VT++GVL AC+++GL++EG  H+ S  
Sbjct: 448 VNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGC-HIFSSA 506

Query: 359 RKYGIIPDAK-HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
           R  G I   K HY C+VD+LGR GRL EA  L   + +      ++W TLLSA R+HG V
Sbjct: 507 RNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISD---VVIWRTLLSACRIHGDV 563

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++A    N++I+   +    +V LSN YA  G W  V  ++S M+   + K P  SWV++
Sbjct: 564 EMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDV 623

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
             + + F AG+       ++   L EL  K+KE GYV   T  V  D+++E +   +  H
Sbjct: 624 EREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYV-PDTRFVLQDLDEEKKIRSLYYH 682

Query: 538 SERLALAFGLI-SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           SE+LA+AF L  S  K  TIRI+KNLR+C DCH   K +S IV RD + RDV RFHHFRN
Sbjct: 683 SEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRN 742

Query: 597 GSCSCGDFW 605
           G CSCGD+W
Sbjct: 743 GLCSCGDYW 751



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 203/355 (57%), Gaps = 5/355 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            IQQ    K +  +  + S  LK GF  +    N LI+ Y++      AR++FDE+   +
Sbjct: 83  LIQQCIGIKSITDITKIQSHALKRGFHHSLG--NKLIDAYLKCGSVVYARKVFDEVPHRH 140

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V++ S++A YI  G+ + A+ ++Q+M+ + + P+EFTF++V KA S L  +  G++ H 
Sbjct: 141 IVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHG 200

Query: 153 HIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                G    N+ V S+LVDMY K   +  AR V D +  ++VV +T++IV ++ + +  
Sbjct: 201 QSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDG 260

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           E+L++FR    +  +  N++ L+SV+  C +L  L SG++ HG++V++G E      ++L
Sbjct: 261 ESLQVFRNMTKKGIE-ANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSL 319

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + MY +CG V+ S KVF +  NP+ VT+TS+IVG  + G    +L  F +M+   I PN 
Sbjct: 320 LTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNS 379

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            T   VL ACS   ++++G Q + ++  K+G+  D      ++D  G+ G  + A
Sbjct: 380 FTLSSVLRACSSLAMLEQGKQ-IHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIA 433



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 156/296 (52%), Gaps = 7/296 (2%)

Query: 40  CKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C +L  L S   +H  I+K+G  S   +   L+  Y R      + ++F + + PN V++
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTW 347

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           TS++ G +  G+ +IALL F++ML + + PN FT ++V++ACS LA L  GKQIH  +  
Sbjct: 348 TSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMK 407

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
           FG   +  V ++L+D YGKC   + AR VF+ +   +VVS  S+I ++AQN  GHEAL++
Sbjct: 408 FGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL 467

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMY 275
           F        + PN      V++AC + G L  G         SG  E      + +VD+ 
Sbjct: 468 FSGMKDTGLE-PNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLL 526

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
            + G +  ++ + N+++   VV + +++     +G    +  + N +I   + P D
Sbjct: 527 GRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVID--LAPED 580



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 9/228 (3%)

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           + +S+I  C  +  +          ++ G  F+  + + L+D Y KCGSV Y+ KVF+ +
Sbjct: 79  LYSSLIQQCIGIKSITDITKIQSHALKRG--FHHSLGNKLIDAYLKCGSVVYARKVFDEV 136

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
            +  +V + SMI    + G  + ++D++  M+  GI P++ TF  V  A S  GLV EG 
Sbjct: 137 PHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQ 196

Query: 352 Q-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           + H  S+    G + +    + +VDM  + G++ +A +L     V  D   +L+  L+  
Sbjct: 197 RAHGQSVVLGVG-VSNVFVGSALVDMYAKFGKMRDA-RLVSDQVVGKD--VVLFTALIVG 252

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
              HG    +++    + +   + AN Y TLS+     G  E++ S R
Sbjct: 253 YSHHGEDGESLQVFRNMTKKGIE-ANEY-TLSSVLVCCGNLEDLTSGR 298


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 329/565 (58%), Gaps = 15/565 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K G   +      L++ Y ++   + A ++F  M +PNVV Y +++AG++ M  
Sbjct: 166 LHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMET 225

Query: 109 -----PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
                   A+ LF +M    + P+EFTF++++KACS +     GKQIH  I  +  Q + 
Sbjct: 226 MADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDE 285

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + ++LV++Y     ++   + F      +VVSWTS+IV H QN Q    L +F E  + 
Sbjct: 286 FIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFS 345

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
            R +P++  ++ +++ACA+L  + SG+  H   +++G     ++ ++ + MYAKCG ++ 
Sbjct: 346 GR-KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDS 404

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           ++  F    NP +V+++ MI   A++G  + ++DLF  M   GI PN +TF+GVL ACSH
Sbjct: 405 ANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSH 464

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP--DGGP 401
            GLV+EG+++ + M + +GI P+ KH  C+VD+LGR GRL E    A+S  +D   +G P
Sbjct: 465 GGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAE----AESFIMDSGFEGDP 520

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W +LLSA R+H   D     + ++IE   + A +YV L N Y  AG       +R+ M
Sbjct: 521 VMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLM 580

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K  G+ KEPG SW+E+ +  ++F AG+        +   L E+  ++K+  Y+  K  LV
Sbjct: 581 KDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEK--LV 638

Query: 522 FVDVEDEARE-EIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
               E + ++  +V  HSE+LA+ FG+IS+P+   +R+MKNLR C  CH+  KL S +  
Sbjct: 639 SDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLEN 698

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ ++RD  RFH FR+GSCSCGD+W
Sbjct: 699 REIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 193/386 (50%), Gaps = 22/386 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I  SG        N LI+ Y +  +   AR +F+   E + VS+ SL+AGY+ +G 
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 122

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGFQYNLVVC 166
               L L  KML + +  N +   + +KAC  +  + +  GK +H      G   ++VV 
Sbjct: 123 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 182

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ-----NAQGHEALEMFREFN 221
           ++L+D Y K  D++ A ++F LM   NVV + ++I    Q     +   +EA+ +F  F 
Sbjct: 183 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLF--FE 240

Query: 222 YQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            QSR  +P++   +S++ AC+++     GK  H  + +   + ++ + +ALV++Y+  GS
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +    K F+      VV++TS+IVG  + G     L LF+E++  G KP++ T   +L A
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVD 396
           C++   V  G Q        Y I     ++T +    + M  + G +D A    K  + +
Sbjct: 361 CANLAAVKSGEQ-----IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK-N 414

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
           PD   + W  ++S++  HG    AV+
Sbjct: 415 PD--IVSWSVMISSNAQHGCAKEAVD 438



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 177/353 (50%), Gaps = 12/353 (3%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M + NVVS+ SL++GY  MG     + LF++   + +  ++FTF+  +  C    DL  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           + IH  I   G    +++ +SL+DMY KC  +D AR VF+     + VSW S+I  + + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACAS--LGRLVSGKVAHGVVVRSGCEFND 265
               E L +  +      +  N + L S + AC S     +  GK+ HG  V+ G + + 
Sbjct: 121 GSNDEMLRLLVKMLRHGLNL-NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY-----GLGRFSLDLFN 320
           VV +AL+D YAK G +  + K+F  + +P+VV Y +MI G  +           ++ LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EM SRG+KP++ TF  +L ACS     + G Q + +   KY +  D      +V++   +
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVELYSLS 298

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           G +++  K   S    P    + W +L+     +G+ +  +   ++L+ S ++
Sbjct: 299 GSIEDGLKCFHST---PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRK 348


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 329/576 (57%), Gaps = 6/576 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +    +   +I+   +H  +LK G  S+ F  N LIN Y +  + Q A+ +FD+M
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              ++VS+ S++A Y     P  AL  F+ M    + P+  T  ++    S L+D    +
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 149 QIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            I    I       ++V+ ++LV+MY K   ++ A  VFD +  ++ +SW +++  + QN
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQN 403

Query: 208 AQGHEALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
               EA++ +     + RD  PNQ    S+I A + +G L  G   H  ++++    +  
Sbjct: 404 GLASEAIDAYNMME-ECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVF 462

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA+ L+D+Y KCG +  +  +F  I   + V + ++I     +G G  +L LF +M++  
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +K + +TFV +L ACSHSGLVDEG +  D M ++YGI P  KHY C+VD+LGR G L++A
Sbjct: 523 VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKA 582

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y+L +++ + PD    +WG LLSA +++G  ++   AS++L+E + +    YV LSN YA
Sbjct: 583 YELVRNMPIQPDAS--IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYA 640

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
              +WE V  +RS  +  G+ K PG S V +  +   FY GN    + +E+   L+ L  
Sbjct: 641 NTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSA 700

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           KMK  GYV   +  V+ D+E++ +E+I+  HSERLA+AFG+IS P    IRI KNLR+C 
Sbjct: 701 KMKSLGYVPDYS-FVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCG 759

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           DCH+  K IS I ER+ VVRD NRFHHF++G CSC 
Sbjct: 760 DCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 203/392 (51%), Gaps = 7/392 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C  L+    VH  + K GF  + F    L++ Y R     VA ++F +M   +
Sbjct: 127 FPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKD 186

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V S+ ++++G+   G    AL +  +M G  V  +  T A+++  C+   D+I G  IH 
Sbjct: 187 VGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHL 246

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+   G   ++ V ++L++MY K   +  A+ VFD M  R++VSW SII A+ QN     
Sbjct: 247 HVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPST 306

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLG-RLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL  F+        RP+   + S+ +  + L  + +S  +   V+ R   + + V+ +AL
Sbjct: 307 ALRFFKGMQLGGI-RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNAL 365

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN 330
           V+MYAK G +N +  VF+++     +++ +++ G  + GL   ++D +N M   R   PN
Sbjct: 366 VNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPN 425

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V ++ A SH G + +G++ + +   K  +  D    TC++D+ G+ GRL++A  L 
Sbjct: 426 QGTWVSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLF 484

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             I   P    + W  ++++  +HGR + A++
Sbjct: 485 YEI---PRDTSVPWNAIIASLGIHGRGEEALQ 513



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 217/455 (47%), Gaps = 17/455 (3%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           ++  +S H  A F      C ++ +   +H+ +L  G   N      LIN YV      +
Sbjct: 13  KSATTSLHKDADFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISL 72

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL----LLFQKMLGNLVWPNEFTFATVIK 136
           +R  FD + + N+ S+ S+++ Y+  G+   A+     LF    G  + P+ +TF  ++K
Sbjct: 73  SRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILK 132

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC  L D   GK++H  +   GF+ ++ V +SLV +Y +   +D A +VF  M  ++V S
Sbjct: 133 ACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS 189

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W ++I    QN     AL +      +   + +   +AS++  CA    +++G + H  V
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGV-KMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           ++ G + +  V++AL++MY+K G +  +  VF+++    +V++ S+I    +      +L
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH--LDSMYRKYGIIPDAKHYTCVV 374
             F  M   GI+P+ +T V +    S   L D+ I    L  + R+  +  D      +V
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQ--LSDQRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           +M  + G ++ A+ +   +   P    + W TL++    +G    A++A N + E    +
Sbjct: 367 NMYAKLGYMNCAHTVFDQL---PRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI 423

Query: 435 AN--AYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
            N   +V++   Y+  G  +    + +++ +  ++
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY 458


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/620 (34%), Positives = 335/620 (54%), Gaps = 37/620 (5%)

Query: 19  TRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78
           T  ++ SS    A  +  LQ C ++  L  +H ++LK+G + +    + L+         
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 79  QVA--RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
            +A  R +FD +  PN   + +++ GY N  +P+ ALLL+  ML + V  N +TF  ++K
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 137 ACSMLADLITGKQIHTHIETFGF-------------------------------QYNLVV 165
           ACS ++ L   +QIH HI   GF                               Q + V 
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S++D Y KC +++ A  +F+ M  RN++SWTS+I       +  EAL +F        
Sbjct: 187 WNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI 246

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              N   L S + ACA LG L  GK  H  + +   E + ++   L+DMYAKCG +  + 
Sbjct: 247 KLDNV-ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAI 305

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF ++    V  +T+MI G A +G GR +L+ F +M + G++PN +TF G+L ACSH+G
Sbjct: 306 EVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAG 365

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LV E     +SM R +G  P  +HY C+VD+LGR G L EA +L +++ V P+    +WG
Sbjct: 366 LVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAA--IWG 423

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL+A  +HG +++  +    LI+ +      Y+ L++ +A AGEW     +R +MK  G
Sbjct: 424 ALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQG 483

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K PGCS + +    + F AG+    +  E+  +L ++  +++E GY      L+    
Sbjct: 484 VSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLE 543

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           + E    I   HSE+LA+ FGLIS   G+TIRI+KNLR+C DCH V KLIS +  R+ ++
Sbjct: 544 DKEKETAI-HHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILM 602

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD  RFH F++G+C+CGD+W
Sbjct: 603 RDRTRFHLFKDGNCTCGDYW 622


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/613 (34%), Positives = 348/613 (56%), Gaps = 37/613 (6%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           +C+T    ++   + K       +H  +LK G+  + +    LI+ YV+  + + AR++F
Sbjct: 87  NCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVF 146

Query: 86  DEMLEPNVVSYTSLM-------------------------------AGYINMGQPQIALL 114
           D+    +VVSYT+L+                               +GY   G  + AL 
Sbjct: 147 DQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALE 206

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           LF++M+   V P+E T  +V+ AC+  A +  G+Q+H+ I+  GF  NL + ++L+D+Y 
Sbjct: 207 LFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYI 266

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           KC +V+ A  +F+ +  ++V+SW ++I  +       EAL +F+E   +S + PN   + 
Sbjct: 267 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNDVTML 325

Query: 235 SVINACASLGRLVSGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           S++ ACA LG +  G+  H  + +   G        ++L+DMYAKCG +  + +VF+ I 
Sbjct: 326 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL 385

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           N S+ ++ +MI G A +G    + D+F+ M    I+P+D+TFVG+L ACSHSG++D G  
Sbjct: 386 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 445

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
              SM   Y I P  +HY C++D+LG +G   EA ++  +++++PDG  ++W +LL A +
Sbjct: 446 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG--VIWCSLLKACK 503

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG V++    +  LI+   +   +YV LSN YA AG W  V  +R+ +   G+ K PGC
Sbjct: 504 MHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGC 563

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           S +EI    + F  G+    R  E+  +L E+E  ++E G+V   T  V  ++E+E +E 
Sbjct: 564 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEWKEG 622

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            +  HSE+LA+AFGLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFH
Sbjct: 623 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 682

Query: 593 HFRNGSCSCGDFW 605
           HFR+G CSC D+W
Sbjct: 683 HFRDGVCSCNDYW 695



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 204/413 (49%), Gaps = 39/413 (9%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           SL  +H++++K+G  +  + L+ LI   V          A  +F+ + EPN++ + ++  
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           G+     P  AL L+  M+   + PN +TF  ++K+C+       G+QIH H+   G+  
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV------------------- 202
           +L V +SL+ MY +   ++ AR+VFD    R+VVS+T++I                    
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181

Query: 203 ------------AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
                        +A+     EALE+F+E   ++  RP++  + SV++ACA    +  G+
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEM-MKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  +   G   N  + +AL+D+Y KCG V  +  +F  +S   V+++ ++I G     
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKH 369
           L + +L LF EM+  G  PNDVT + +L AC+H G ++ G   H+    R  G+   + H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            T ++DM  + G ++ A ++  SI    +     W  ++    +HGR + A +
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSIL---NRSLSSWNAMIFGFAMHGRANAAFD 410


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 325/540 (60%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + A++LFDE+   +VVS+ ++++GY   G  + AL LF+ M+   V P+
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 265

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+    +  G+Q+H  I+  GF  NL + ++L+D+Y KC +++ A  +F+
Sbjct: 266 ESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +       EAL +F+E   +S + PN   + S++ ACA LG + 
Sbjct: 326 RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAID 384

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMYAKCG +  + +VFN I + S+ ++ +MI G
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 444

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    S DLF+ M   GI+P+D+TFVG+L ACSHSG++D G     +M + Y + P
Sbjct: 445 FAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTP 504

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG +G   EA ++   ++++PDG  ++W +LL A ++HG V++    + 
Sbjct: 505 KLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG--VIWCSLLKACKMHGNVELGESFAE 562

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            LI+   +   +YV LSN YA AG W  V   R+ +   G+ K PGCS +EI    + F 
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFI 622

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    R  E+  +L E+E  +++ G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 623 IGDKFHPRNREIYGMLEEMEVLLEKAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIAF 681

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFHHFR+G CSC D+W
Sbjct: 682 GLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 209/421 (49%), Gaps = 39/421 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNV 93
           L  CK L SL  +H++++K G  +  + L+ LI   +     +    A  +F  + EPN+
Sbjct: 40  LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + + ++  G+     P  AL L+  M+   + PN +TF  V+K+C+       G+QIH H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159

Query: 154 IETFGFQYNLVVCSSLVDMY---GKCND----------------------------VDGA 182
           +   G   +L V +SL+ MY   G+  D                            ++ A
Sbjct: 160 VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +++FD +  ++VVSW ++I  +A+     EALE+F++   ++  RP++  + +V++ACA 
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTMVTVVSACAQ 278

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            G +  G+  H  +   G   N  + +AL+D+Y+KCG +  +  +F R+    V+++ ++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G     L + +L LF EM+  G  PNDVT + +L AC+H G +D G   H+    R  
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+   +   T ++DM  + G ++ A+++  SI          W  ++    +HGR D + 
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS---WNAMIFGFAMHGRADASF 455

Query: 422 E 422
           +
Sbjct: 456 D 456


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 329/565 (58%), Gaps = 15/565 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K G   +      L++ Y ++   + A ++F  M +PNVV Y +++AG++ M  
Sbjct: 245 LHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMET 304

Query: 109 -----PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
                   A+ LF +M    + P+EFTF++++KACS +     GKQIH  I  +  Q + 
Sbjct: 305 MADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDE 364

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + ++LV++Y     ++   + F      +VVSWTS+IV H QN Q    L +F E  + 
Sbjct: 365 FIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFS 424

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
            R +P++  ++ +++ACA+L  + SG+  H   +++G     ++ ++ + MYAKCG ++ 
Sbjct: 425 GR-KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDS 483

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           ++  F    NP +V+++ MI   A++G  + ++DLF  M   GI PN +TF+GVL ACSH
Sbjct: 484 ANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSH 543

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP--DGGP 401
            GLV+EG+++ + M + +GI P+ KH  C+VD+LGR GRL E    A+S  +D   +G P
Sbjct: 544 GGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAE----AESFIMDSGFEGDP 599

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W +LLSA R+H   D     + ++IE   + A +YV L N Y  AG       +R+ M
Sbjct: 600 VMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLM 659

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K  G+ KEPG SW+E+ +  ++F AG+        +   L E+  ++K+  Y+  K  LV
Sbjct: 660 KDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEK--LV 717

Query: 522 FVDVEDEARE-EIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
               E + ++  +V  HSE+LA+ FG+IS+P+   +R+MKNLR C  CH+  KL S +  
Sbjct: 718 SDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLEN 777

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ ++RD  RFH FR+GSCSCGD+W
Sbjct: 778 REIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 205/412 (49%), Gaps = 12/412 (2%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T    +Q       LI     H  ++K+ F    F LN+L+  Y +  +T VA++LFD M
Sbjct: 21  TYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRM 80

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
            + NVVS+ SL++GY  MG     + LF++   + +  ++FTF+  +  C    DL  G+
Sbjct: 81  PKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGR 140

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            IH  I   G    +++ +SL+DMY KC  +D AR VF+     + VSW S+I  + +  
Sbjct: 141 LIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIG 200

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACAS--LGRLVSGKVAHGVVVRSGCEFNDV 266
              E L +  +      +  N + L S + AC S     +  GK+ HG  V+ G + + V
Sbjct: 201 SNDEMLRLLVKMLRHGLNL-NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 259

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY-----GLGRFSLDLFNE 321
           V +AL+D YAK G +  + K+F  + +P+VV Y +MI G  +           ++ LF E
Sbjct: 260 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 319

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M SRG+KP++ TF  +L ACS     + G Q + +   KY +  D      +V++   +G
Sbjct: 320 MQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVELYSLSG 378

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
            +++  K   S    P    + W +L+     +G+ +  +   ++L+ S ++
Sbjct: 379 SIEDGLKCFHST---PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRK 427



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 193/386 (50%), Gaps = 22/386 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I  SG        N LI+ Y +  +   AR +F+   E + VS+ SL+AGY+ +G 
Sbjct: 142 IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 201

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGFQYNLVVC 166
               L L  KML + +  N +   + +KAC  +  + +  GK +H      G   ++VV 
Sbjct: 202 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 261

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ-----NAQGHEALEMFREFN 221
           ++L+D Y K  D++ A ++F LM   NVV + ++I    Q     +   +EA+ +F  F 
Sbjct: 262 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLF--FE 319

Query: 222 YQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            QSR  +P++   +S++ AC+++     GK  H  + +   + ++ + +ALV++Y+  GS
Sbjct: 320 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 379

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +    K F+      VV++TS+IVG  + G     L LF+E++  G KP++ T   +L A
Sbjct: 380 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 439

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVD 396
           C++   V  G Q        Y I     ++T +    + M  + G +D A    K  + +
Sbjct: 440 CANLAAVKSGEQ-----IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK-N 493

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVE 422
           PD   + W  ++S++  HG    AV+
Sbjct: 494 PD--IVSWSVMISSNAQHGCAKEAVD 517


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 313/528 (59%), Gaps = 7/528 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A QLFDE    +V S+ ++++G +  G    AL   Q+M+   V  + +T++ V     +
Sbjct: 211 ATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGL 270

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSW 197
           L+    G+Q+H  +     + +  V  SL+DMY KC +++ A  +FD           +W
Sbjct: 271 LSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAW 330

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           ++++  + QN +  EALE FR    +      Q +L SV +ACA+ G +  G+  HG V 
Sbjct: 331 STMVAGYVQNGREEEALEFFRRMLREGVP-AGQFILTSVASACANAGMVEQGRQVHGFVE 389

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           + G  F+  +ASA+VDMY+K GS+  + ++F      +V  +T+M+   A +G GR +L+
Sbjct: 390 KLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALE 449

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           +F+ M +  I PN++T V VL ACSHSGLV +G  + + M  +YGI+P+ +HY C+VD+ 
Sbjct: 450 IFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLY 509

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G LD+A    +  ++  +   ++W TLLSA RLH  ++ A  AS +L++  Q  A +
Sbjct: 510 GRAGLLDKAKNFIEENKISHEA--VVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGS 567

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV +SN YA   +W +   LRS MK   + K+PG SW+ +++  + F A +    R +E+
Sbjct: 568 YVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEI 627

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            + L +L  ++KE GY   +T LV  D+E+E RE  +  HSE+LA+AFG+IS P G  +R
Sbjct: 628 YAYLEKLMERLKEMGYT-SRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALR 686

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I KNLR+C DCH+  K I+   +R+ VVRD+ RFHHF++G CSC DFW
Sbjct: 687 IFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 181/379 (47%), Gaps = 43/379 (11%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL--VWPNEFTFATVIKAC 138
           A ++FD     ++ ++TS+++G    G+    +  F +ML       PN F  A V++ C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           + L D+ +G++IH  I   G   ++V+C++++DMY KC D   ARR F  M  ++  SW 
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI----NACASLGRLVS------ 248
            +I A  Q+     A ++F E +   RD  + + + S +    +   +LGRL        
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSL--RDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGV 254

Query: 249 ----------------------GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
                                 G+  HG VV +  E +  V  +L+DMY KCG +  +  
Sbjct: 255 TFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALS 314

Query: 287 VFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +F+R S+        +++M+ G  + G    +L+ F  M+  G+         V  AC++
Sbjct: 315 IFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACAN 374

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +G+V++G Q +     K G   DA   + +VDM  ++G L++A ++ +S Q        L
Sbjct: 375 AGMVEQGRQ-VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTK---NVAL 430

Query: 404 WGTLLSASRLHGRVDIAVE 422
           W T+L +   HG+  +A+E
Sbjct: 431 WTTMLCSYASHGQGRMALE 449



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + K G   +    + +++ Y +    + A ++F      NV  +T+++  Y + GQ
Sbjct: 384 VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQ 443

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
            ++AL +F +M    + PNE T   V+ ACS    +  G      + E +G   N    +
Sbjct: 444 GRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYN 503

Query: 168 SLVDMYGKCNDVDGAR 183
            +VD+YG+   +D A+
Sbjct: 504 CMVDLYGRAGLLDKAK 519


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 325/564 (57%), Gaps = 5/564 (0%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L SL  +H   LK  F+ N    N  +  Y +      A+++F  +    V S+ +L+ G
Sbjct: 161 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 220

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           +     P+++L    +M  + + P+ FT  +++ ACS L  L  GK++H  I     + +
Sbjct: 221 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 280

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           L V  S++ +Y  C ++   + +FD M  +++VSW ++I  + QN     AL +FR+   
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 340

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                    M+  V  AC+ L  L  G+ AH   ++   E +  +A +L+DMYAK GS+ 
Sbjct: 341 YGIQLCGISMMP-VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 399

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S KVFN +   S  ++ +MI+G   +GL + ++ LF EM   G  P+D+TF+GVL AC+
Sbjct: 400 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 459

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK-LAKSIQVDPDGGP 401
           HSGL+ EG+++LD M   +G+ P+ KHY CV+DMLGR G+LD+A + +A+ +  + D G 
Sbjct: 460 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG- 518

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W +LLS+ R+H  +++  + + +L E   +    YV LSN YA  G+WE+V  +R  M
Sbjct: 519 -IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 577

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
               + K+ GCSW+E+  + ++F  G    +   E+ SL   LE K+ + GY      + 
Sbjct: 578 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 637

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
               E+E  E++ G HSE+LAL +GLI   +G TIR+ KNLR+C DCH+  KLIS ++ER
Sbjct: 638 HDLSEEEKIEQLRG-HSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMER 696

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + VVRD  RFHHF+NG CSCGD+W
Sbjct: 697 EIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 162/342 (47%), Gaps = 9/342 (2%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKML----GNLVWPNEFTFATVIKACSMLADLITG 147
           N VS+ S++  + + G  + + LL  +M+         P+  T  TV+  C+   ++  G
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           K +H           LV+ ++L+DMY KC  +  A+ +F +   +NVVSW +++   +  
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 208 AQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
              H   ++ R+      D + ++  + + +  C     L S K  H   ++    +N++
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL 181

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA+A V  YAKCGS++Y+ +VF+ I + +V ++ ++I G A+    R SLD   +M   G
Sbjct: 182 VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISG 241

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + P+  T   +L ACS    +  G +    + R + +  D   Y  V+ +    G L   
Sbjct: 242 LLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW-LERDLFVYLSVLSLYIHCGELCTV 300

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
             L  +++   D   + W T+++    +G  D A+    Q++
Sbjct: 301 QALFDAME---DKSLVSWNTVITGYLQNGFPDRALGVFRQMV 339


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 325/564 (57%), Gaps = 5/564 (0%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L SL  +H   LK  F+ N    N  +  Y +      A+++F  +    V S+ +L+ G
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 470

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           +     P+++L    +M  + + P+ FT  +++ ACS L  L  GK++H  I     + +
Sbjct: 471 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 530

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           L V  S++ +Y  C ++   + +FD M  +++VSW ++I  + QN     AL +FR+   
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 590

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                    M+  V  AC+ L  L  G+ AH   ++   E +  +A +L+DMYAK GS+ 
Sbjct: 591 YGIQLCGISMMP-VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 649

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S KVFN +   S  ++ +MI+G   +GL + ++ LF EM   G  P+D+TF+GVL AC+
Sbjct: 650 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 709

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK-LAKSIQVDPDGGP 401
           HSGL+ EG+++LD M   +G+ P+ KHY CV+DMLGR G+LD+A + +A+ +  + D G 
Sbjct: 710 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG- 768

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W +LLS+ R+H  +++  + + +L E   +    YV LSN YA  G+WE+V  +R  M
Sbjct: 769 -IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 827

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
               + K+ GCSW+E+  + ++F  G    +   E+ SL   LE K+ + GY      + 
Sbjct: 828 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 887

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
               E+E  E++ G HSE+LAL +GLI   +G TIR+ KNLR+C DCH+  KLIS ++ER
Sbjct: 888 HDLSEEEKIEQLRG-HSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMER 946

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + VVRD  RFHHF+NG CSCGD+W
Sbjct: 947 EIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 186/386 (48%), Gaps = 9/386 (2%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH  ++K+G + + F  N L++ Y        A QLFD M E N+VS+ S++  + + G
Sbjct: 208 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 108 QPQIALLLFQKML----GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
             + + LL  +M+         P+  T  TV+  C+   ++  GK +H           L
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 327

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           V+ ++L+DMY KC  +  A+ +F +   +NVVSW +++   +     H   ++ R+    
Sbjct: 328 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 387

Query: 224 SRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
             D + ++  + + +  C     L S K  H   ++    +N++VA+A V  YAKCGS++
Sbjct: 388 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 447

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+ +VF+ I + +V ++ ++I G A+    R SLD   +M   G+ P+  T   +L ACS
Sbjct: 448 YAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 507

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
               +  G +    + R + +  D   Y  V+ +    G L     L  +++   D   +
Sbjct: 508 KLKSLRLGKEVHGFIIRNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAME---DKSLV 563

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLI 428
            W T+++    +G  D A+    Q++
Sbjct: 564 SWNTVITGYLQNGFPDRALGVFRQMV 589



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 150/306 (49%), Gaps = 7/306 (2%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H  +  S  L N   L   +I  Y        +R +FD +   N+  + ++++ Y    
Sbjct: 106 IHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNE 165

Query: 108 QPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                L  F +M+    + P+ FT+  VIKAC+ ++D+  G  +H  +   G   ++ V 
Sbjct: 166 LYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVG 225

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++LV  YG    V  A ++FD+M  RN+VSW S+I   + N    E+  +  E   ++ D
Sbjct: 226 NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGD 285

Query: 227 ---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+   L +V+  CA    +  GK  HG  V+   +   V+ +AL+DMY+KCG +  
Sbjct: 286 GAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITN 345

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKPNDVTFVGVLHAC 341
           +  +F   +N +VV++ +M+ G +  G    + D+  +M++ G  +K ++VT +  +  C
Sbjct: 346 AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 405

Query: 342 SHSGLV 347
            H   +
Sbjct: 406 FHESFL 411



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 141/316 (44%), Gaps = 9/316 (2%)

Query: 134 VIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++A     D+  G++IH  +  +   + + V+C+ ++ MY  C   D +R VFD +  +
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           N+  W ++I ++++N    E LE F E    +   P+      VI ACA +  +  G   
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 209

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG+VV++G   +  V +ALV  Y   G V  + ++F+ +   ++V++ SMI   +  G  
Sbjct: 210 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 269

Query: 313 RFSLDLFNEMISR----GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
             S  L  EM+         P+  T V VL  C+    +  G + +     K  +  +  
Sbjct: 270 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG-KGVHGWAVKLRLDKELV 328

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
               ++DM  + G +  A  + K   ++ +   + W T++      G      +   Q++
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFK---MNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385

Query: 429 ESNQQVANAYVTLSNT 444
              + V    VT+ N 
Sbjct: 386 AGGEDVKADEVTILNA 401


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 320/557 (57%), Gaps = 5/557 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           HS  +K     + +    L+N Y  L   + A ++F+E+   N V +  ++ G++N  + 
Sbjct: 136 HSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEE 195

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH-THIETFGFQYNLVVCSS 168
                LF +M  +    + F    +I+AC  +     GK  H   I+      N  + +S
Sbjct: 196 FGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTS 255

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  +D A ++F+ +  R+VV W++II   A+N +  E++ MFR+    S   P
Sbjct: 256 LVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVT-P 314

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    AS++ AC+SLG L  G+  HG ++R+G E +    ++ +DMYAKCG +  + +VF
Sbjct: 315 NSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVF 374

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            +I   +V ++++MI G   +GL   +L+LF EM S    PN VTFV VL ACSHSG ++
Sbjct: 375 CQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIE 434

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG  H  SM R YGI P  +HY C+VD+LGR G++DEA     ++  +P  G   WG LL
Sbjct: 435 EGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEP--GASAWGALL 492

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R+H R ++A E + +L+      +  YV LSN YA  G WE V   R +M   GIHK
Sbjct: 493 GACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHK 552

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
             G + +EI ++ Y F + +    + +++ SL   L+ +M+E GYV      V  DV+DE
Sbjct: 553 IVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYV-PDLRFVLHDVDDE 611

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++E++  HSE+LA+ FGL++  +G+ IRI KN+R+C DCH   K IS I  R  ++RDV
Sbjct: 612 VKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDV 671

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHH ++G CSCGD+W
Sbjct: 672 KRFHHVQDGVCSCGDYW 688



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 213/443 (48%), Gaps = 21/443 (4%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           K L S   ++++IL +    +      +   Y++L    VA + F+ +   N+ S+ +++
Sbjct: 26  KTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTIL 85

Query: 101 AGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           A +         L LF++ML  G LV  + F     +KAC  L+     K  H+      
Sbjct: 86  ASHSKNKCFYDVLQLFKRMLKEGKLV--DSFNLVFAVKACFGLSLFQGAKLFHSLAIKLR 143

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            + +  V  +L+++Y +   ++ A +VF+ +  +N V W  +I  H   ++     E+F 
Sbjct: 144 LEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFS 203

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAK 277
               +S    +  ++  +I AC ++     GK  HG+ ++    + N  + ++LVDMY K
Sbjct: 204 RMR-RSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMK 262

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           CG ++++ K+F  IS   VV ++++I G A+ G    S+ +F +M++  + PN VTF  +
Sbjct: 263 CGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASI 322

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           + ACS  G + +G      M R  G+  D K+YT  +DM  + G +  AY++   I   P
Sbjct: 323 VLACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQI---P 378

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIE--SNQQVANA--YVTLSNTYALAGE--- 450
           +     W T+++   +HG   +  EA N   E  S  Q+ N+  +V++ +  + +G    
Sbjct: 379 EKNVFSWSTMINGFGMHG---LCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEE 435

Query: 451 -WENVHSLRSEMKRTGIHKEPGC 472
            W +  S+  +   T + +   C
Sbjct: 436 GWSHFKSMSRDYGITPVEEHYAC 458



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 40  CKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C  L SL    SVH  ++++G   +       I+ Y +      A ++F ++ E NV S+
Sbjct: 326 CSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSW 385

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           ++++ G+   G    AL LF +M      PN  TF +V+ ACS    +  G    +H ++
Sbjct: 386 STMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEG---WSHFKS 442

Query: 157 FGFQYNLVVC----SSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVAHAQNAQGH 211
               Y +       + +VD+ G+   +D A    + M      S W +++ A   + +  
Sbjct: 443 MSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAE 502

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            A E+ ++      D+   +++ S I A   +  +V
Sbjct: 503 LAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMV 538


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 311/526 (59%), Gaps = 7/526 (1%)

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           QLFDE    +  S+ ++++G +  G    AL   ++M    V  N +T++T      ML 
Sbjct: 199 QLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLL 258

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNV-VSWTS 199
               G+Q+H  +     + +  V SSL+DMY KC  ++ A  VFD      R++  +W++
Sbjct: 259 LPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWST 318

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           ++  + QN +  EAL++FR    +     ++  L SV  ACA++G +  G+  HG V + 
Sbjct: 319 MVAGYVQNGREEEALDLFRRM-LREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKL 377

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
             + +  +ASA+VDMYAKCG++  +  +F+R    ++  +TSM+   A +G GR +++LF
Sbjct: 378 WYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELF 437

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
             M +  + PN++T VGVL ACSH GLV EG  +   M  +YGI+P  +HY C+VD+ GR
Sbjct: 438 ERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGR 497

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
           +G LD+A    +   ++ +   ++W TLLSA RLH   + A  AS +L++  Q  A +YV
Sbjct: 498 SGLLDKAKNFIEENNINHEA--IVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYV 555

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLS 499
            LSN YA   +W +   LR  M+   + K+PG SW+ +++  + F AG+A   + +E+ +
Sbjct: 556 MLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYA 615

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
            L +L  ++KE GY   +T LV  DVEDE RE  +  HSE+LA+AFG+IS P G  +RI 
Sbjct: 616 YLEKLVERLKEIGYT-SRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIF 674

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+C DCH+  K IS    R+ VVRD+ RFHHF++ SCSC DFW
Sbjct: 675 KNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 177/391 (45%), Gaps = 50/391 (12%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFT 130
           +VR ++   AR +FDE        +T  ++G    G+    +  F +ML      PN F 
Sbjct: 55  WVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFV 114

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF---- 186
            A V++ C+ + D+ +GK++H  +   G   ++V+C++++DMY KC   + ARRVF    
Sbjct: 115 LAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMA 174

Query: 187 ------------------DLMGC---------RNVVSWTSIIVAHAQNAQGHEALEMFRE 219
                             D++G          R+  SW +II    ++    +AL   R 
Sbjct: 175 ERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRR 234

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
              Q+    N +  ++       L     G+  HG V+ +  E +  V S+L+DMY KCG
Sbjct: 235 MA-QAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCG 293

Query: 280 SVNYSDKVFNRISNPSV---VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
            +  +  VF+  S  +      +++M+ G  + G    +LDLF  M+  G+  +  T   
Sbjct: 294 LLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTS 353

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-----AK 391
           V  AC++ G+V++G Q +     K     DA   + +VDM  + G L++A  +      K
Sbjct: 354 VAAACANVGMVEQGRQ-VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTK 412

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           +I V        W ++L +   HG+  IA+E
Sbjct: 413 NIAV--------WTSMLCSYASHGQGRIAIE 435



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 29/250 (11%)

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR VFD    R    WT  I   A+  +  + +  F E   +    PN  +LA+V+  CA
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            +G + SGK  HG ++R+G   + V+ +A++DMYAKCG    + +VF  ++    V++  
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
            I    + G    S+ LF+E   R     +    G++     SG   + + HL  M +  
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLM----RSGHAADALSHLRRMAQA- 238

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G++ +  HYT              A+ LA  + + PD G           +LHGRV IA 
Sbjct: 239 GVVFN--HYT-----------YSTAFVLAGMLLL-PDLG----------RQLHGRVLIAA 274

Query: 422 EASNQLIESN 431
              +  + S+
Sbjct: 275 LEGDAFVRSS 284



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + K  +  +    + +++ Y +    + AR +FD     N+  +TS++  Y + GQ
Sbjct: 370 VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQ 429

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
            +IA+ LF++M    + PNE T   V+ ACS +  +  G+     + E +G   ++   +
Sbjct: 430 GRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYN 489

Query: 168 SLVDMYGKCNDVDGARRVFD 187
            +VD+YG+   +D A+   +
Sbjct: 490 CIVDLYGRSGLLDKAKNFIE 509


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/603 (36%), Positives = 341/603 (56%), Gaps = 49/603 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   L+SG   + F  N +++ Y +    + A ++F+ M   +VVS+ +++ GY  +G+
Sbjct: 272 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 331

Query: 109 PQIALLLFQKM------LGNLVW-----------------------------PNEFTFAT 133
              AL LF+K+      L  + W                             PN  T  +
Sbjct: 332 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVS 391

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYN-------LVVCSSLVDMYGKCNDVDGARRVF 186
           ++  C+    L+ GK+ H H   +    +       L+V ++L+DMY KC     AR +F
Sbjct: 392 LLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMF 451

Query: 187 DLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQSRDRPNQHMLASVINACASL 243
           DL+    R+VV+WT +I  +AQ+ + +EALE+F +     +   PN   ++  + ACA L
Sbjct: 452 DLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARL 511

Query: 244 GRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           G L  G+  H  V+R+  E   + VA+ L+DMY+K G V+ +  VF+ +   + V++TS+
Sbjct: 512 GALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSL 571

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           + G   +G G  +L +F EM    + P+ VTFV VL+ACSHSG+VD+GI + + M + +G
Sbjct: 572 MTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFG 631

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           ++P A+HY C+VD+L R GRLDEA +L + + + P   P +W  LLSA R++  V++   
Sbjct: 632 VVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPT--PAVWVALLSACRVYANVELGEY 689

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
           A+NQL+E       +Y  LSN YA A  W++V  +R  MK TGI K PGCSWV+ R  T 
Sbjct: 690 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 749

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F+AG+       ++  LLR+L +++K  GYV         DV+DE + +++  HSE+LA
Sbjct: 750 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNR-FALHDVDDEEKGDLLSEHSEKLA 808

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           LA+G+++   G  IRI KNLR C DCH  F  IS I+E + +VRD +RFHHF+NGSCSC 
Sbjct: 809 LAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCR 868

Query: 603 DFW 605
            +W
Sbjct: 869 GYW 871



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 212/459 (46%), Gaps = 64/459 (13%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN---V 93
             +CK L S    H ++L  G   +     H+I+ Y+       A  +    L P+   V
Sbjct: 55  FHQCKSLASAELTHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRR-LHPSSHTV 110

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHT 152
             +  L+   +++G  +  L L+++M   L W P+ +TF  V+KAC  +     G  +H 
Sbjct: 111 FWWNQLIRRSVHLGFLEDVLQLYRRM-QRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQNAQ 209
            +   GF++N+ V + LV MYG+C   + AR+VFD M   G  ++VSW SI+ A+ Q   
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VA 268
              A++MF         RP+   L +V+ ACAS+G    GK  HG  +RSG  F DV V 
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGL-FEDVFVG 288

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-----------------------------------N 293
           +A+VDMYAKCG +  ++KVF R+                                     
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG--- 350
            +VVT++++I G A+ GLG  +LD+F +M+  G +PN VT V +L  C+ +G +  G   
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 351 -------IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
                  I +LD    +     D      ++DM  +      A  +   I    D   + 
Sbjct: 409 HCHAIKWILNLD----ENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP-PKDRSVVT 463

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           W  L+  +  HG  + A+E  +Q+++ +  V     T+S
Sbjct: 464 WTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 502



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C  L +L     +H+ +L++ F S   F  N LI+ Y +      AR +FD M + N
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
            VS+TSLM GY   G+ + AL +F +M    + P+  TF  V+ ACS
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACS 611


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 332/576 (57%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  L  L    SV      +G+  + F  + L++ Y R      A ++F  M 
Sbjct: 111 FTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMP 170

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + V++++++AG+++ GQP  A+ ++++M  + V  +E     VI+AC+   ++  G  
Sbjct: 171 RRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGAS 230

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H H+   G + ++V  +SLVDMY K   +D A RVF LM  RN VSW+++I   AQN Q
Sbjct: 231 VHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQ 290

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL +FR     S  +P+   L S + AC+++G L  G+  HG +VR   +FN ++ +
Sbjct: 291 SDEALRLFRNMQ-ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGT 348

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A +DMY+KCGS+  +  +FN IS+  ++ + +MI     +G G+ +L LF EM   G++P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  +L A SHSGLV+EG      M   + I P  KHY C+VD+L R+G ++EA  L
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S++ +P     +W  LLS    + ++++    ++ ++E           +SN YA   
Sbjct: 469 LTSMKAEPTVA--IWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W+ V  +R  MK +G  K PGCS +EIR   + F   +    +  E++S + +L+ +M+
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY+  +T  V+ D+E+E +E+ +  HSERLA+AFGL++   G  + I+KNLR+C DCH
Sbjct: 587 KMGYI-PRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCH 645

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K IS I +R+ VVRD  RFHHF++G CSC D+W
Sbjct: 646 DAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 165/331 (49%), Gaps = 7/331 (2%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G P  AL +F + L     P+  TF   + AC+ L DL  G+ +       G++ ++ VC
Sbjct: 88  GSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           SSL+ +Y +   +  A +VF  M  R+ V+W++++       Q  +A++M+R    +   
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR-EDGV 205

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           + ++ ++  VI AC +   +  G   HG ++R G   + V A++LVDMYAK G ++ + +
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF  + + + V++++MI G A+ G    +L LF  M + GI+P+    V  L ACS+ G 
Sbjct: 266 VFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGF 325

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G      + R++    +    T  +DM  + G L  A  L   I    D   +LW  
Sbjct: 326 LKLGRSVHGFIVRRFDF--NCILGTAAIDMYSKCGSLASAQMLFNMIS---DRDLILWNA 380

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           +++    HGR   A+    ++ E+  +  +A
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHA 411



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 3/186 (1%)

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           H++      AL +FR     +R  P+       ++ACA LG L  G+        +G + 
Sbjct: 84  HSRRGSPASALRVFRALPPAAR--PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V S+L+ +YA+ G++  + KVF R+     VT+++M+ G    G    ++ ++  M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G+K ++V  +GV+ AC+ +  V  G      + R +G+  D    T +VDM  + G L
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLL 260

Query: 384 DEAYKL 389
           D A ++
Sbjct: 261 DVACRV 266


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 325/540 (60%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + A ++FDE+   +VVS+ + ++GY   G  + AL LF+KM+   V P+
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPD 234

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+    +  G+Q+H+ I   GF  NL + ++L+D+Y KC +++ A  +F 
Sbjct: 235 ESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQ 294

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +       EAL +F++   +S ++PN   + S+++ACA LG + 
Sbjct: 295 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQDM-LRSGEKPNDVTMLSILSACAHLGAID 353

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMYAKCG +  + +VF+ + N S+ ++ +MI G
Sbjct: 354 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFG 413

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    + D+F+ M   GI+P+D+TFVG+L ACSHSG++D G     SM R Y ++P
Sbjct: 414 FAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMP 473

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+ G +G   EA K+  +++++PDG  ++W +LL A ++HG V++    + 
Sbjct: 474 KLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDG--VIWCSLLKACKMHGNVELGESYAQ 531

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            LI+   +   +YV LSN YA A  W  V   R+ +   G+ K PGCS +EI    + F 
Sbjct: 532 NLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFI 591

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    R  E+  +L E+E  ++E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 592 IGDKFHPRNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIAF 650

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFHHFR+G CSC D+W
Sbjct: 651 GLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 210/421 (49%), Gaps = 39/421 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNV 93
           L  CK L SL  +H++++K+G  +  + L+ L+   V          A  +FD + EP +
Sbjct: 9   LHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXL 68

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + + ++  G+     P  AL L+  M+   + PN +TF  ++K+C+       G+Q+H  
Sbjct: 69  LIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQ 128

Query: 154 IETFGFQYNLVVCSSLVDMY---GKCND----------------------------VDGA 182
           +  FGF  +L + +SL+ MY   G+  D                            ++ A
Sbjct: 129 VLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESA 188

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
            ++FD +  ++VVSW + I  +A+     EALE+F++   ++  RP++  + +V++ACA 
Sbjct: 189 HKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKM-MKTNVRPDESTMVTVLSACAQ 247

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            G +  G+  H  +   G   N  + +AL+D+Y+KCG +  +  +F  +SN  V+++ ++
Sbjct: 248 SGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTL 307

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G     L + +L LF +M+  G KPNDVT + +L AC+H G +D G   H+    R  
Sbjct: 308 IGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLK 367

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+   +   T ++DM  + G ++ A ++  S+    +     W  ++    +HGR + A 
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSML---NRSLSSWNAMIFGFAMHGRANAAF 424

Query: 422 E 422
           +
Sbjct: 425 D 425


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 328/576 (56%), Gaps = 15/576 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C    SL    S H   +  G +++T T N LIN Y +  +   AR++FD M   ++
Sbjct: 63  LQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSI 122

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+ +++AGY +  +   AL LF +M        EFT ++ + AC+    +I  KQ+HT 
Sbjct: 123 ISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTI 182

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                   +  V ++ +D+Y KCN +  A  VF+ M  +  V+W+S+     QN    E 
Sbjct: 183 AIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEV 242

Query: 214 LEMFREFNYQSRDRPNQHM----LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           L +F     QS  R    +    ++S+++ CASL  ++ G   H V+V+ G   N  VA+
Sbjct: 243 LCLF-----QSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVAT 297

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +LVD+YAKCG +  S +VF  +   +VV + +MI   +++     ++ LF +M   GI P
Sbjct: 298 SLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFP 357

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N+VT++ +L ACSH+GLV+EG  + + +       P+  HY+C+VD+LGR+G+ DEA+KL
Sbjct: 358 NEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKL 417

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
              +  +P     +WG+LL +SR+H  + +A  A+ QL     +    +V LSN YA +G
Sbjct: 418 LDKMPFEPTAS--MWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASG 475

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            WENV   R  ++ +G  KE G SW+E + + + F AG       ++V + L E+  +M+
Sbjct: 476 NWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMR 535

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           +  +    T     DV  + +EE++  HSE+LA AFGLIS+P  I I I KNLR+C DCH
Sbjct: 536 KISH-RANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCH 594

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K++S I ER  +VRD+NRFHHF++GSCSCGDFW
Sbjct: 595 SFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 155/307 (50%), Gaps = 9/307 (2%)

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           FT   +++ C+    L+ GK  H     FG   + V C+ L+++Y KC   D ARRVFD 
Sbjct: 57  FTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDA 116

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  R+++SW ++I  +  N +  EAL++F   + +   +  +  L+S + ACA+   ++ 
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREG-TQMTEFTLSSTLCACAAKYAIIE 175

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
            K  H + ++   + +  V +A +D+YAKC  +  +  VF  +   + VT++S+  G  +
Sbjct: 176 CKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQ 235

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            GL    L LF      G++  + T   +L  C+   L+ EG Q + ++  K+G   +  
Sbjct: 236 NGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQ-VHAVIVKHGFHRNLF 294

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
             T +VD+  + G+++++Y++   ++   +   +LW  ++++   H     A+     L 
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADME---EKNVVLWNAMIASFSRHAHSWEAM----ILF 347

Query: 429 ESNQQVA 435
           E  QQV 
Sbjct: 348 EKMQQVG 354



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 4/186 (2%)

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
           RD  +   L  ++  CA    L+ GK  HG+ +  G   + V  + L+++Y KCG  + +
Sbjct: 51  RDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCA 110

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            +VF+ +S  S++++ +MI G         +L LF+ M   G +  + T    L AC+  
Sbjct: 111 RRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAK 170

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
             + E  Q L ++  K  +   +   T  +D+  +   + +A  + +++   P+   + W
Sbjct: 171 YAIIECKQ-LHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENM---PEKTSVTW 226

Query: 405 GTLLSA 410
            +L + 
Sbjct: 227 SSLFAG 232


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 337/585 (57%), Gaps = 9/585 (1%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           QN R  C+    F +     + L     +H+ ILK G  +     ++LIN Y + +    
Sbjct: 23  QNYRQICNLLLSFTRS----RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLF 78

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           + Q+FDE  + +  +++S+++ +     P +AL  F++ML + V P++  + +  KAC  
Sbjct: 79  SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF 138

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L     GK +H      G+  ++ V SSLVDMY KC ++  AR +FD M  RNVVSW+ +
Sbjct: 139 LRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGM 198

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  +AQ   G EAL +F++   +  D  N    +SVI  C+S   L  GK+ HG+ ++  
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVD-VNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMS 257

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            + +  V SAL+ +Y+KCG +  + +VF+ I   ++  + SM++  A++   +    LF 
Sbjct: 258 FDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFE 317

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EM + G+KPN + F+ VL+ACSH+GLV++G ++  S+ R YGI P+ +HY  +VD+LGR 
Sbjct: 318 EMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRA 376

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G+L EA  + K + + P     +WG LL+  R+H   ++A   +++++E +   +  +V 
Sbjct: 377 GKLQEAVSVIKQMPMRPTES--VWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVL 434

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           LSN YA AG +E    +R  ++  G+ KE G SWVE  ++ + F AG+    +  E+   
Sbjct: 435 LSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEK 494

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L ELE +M++ GYV   T  V   V+ E + E +  HSERLA+AFGLI+ P G  IR+MK
Sbjct: 495 LEELEEEMEKAGYV-ADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMK 553

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH   K +S    R  +VRD NRFH F +G CSCGD+W
Sbjct: 554 NLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/607 (34%), Positives = 330/607 (54%), Gaps = 36/607 (5%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE- 90
           H +  LQ+C   + L  +H+ +LKSG L + + +   ++  +    +  A  +F    + 
Sbjct: 13  HNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDR 72

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           P+   +  ++ G     QP  +LLL+ +ML      N +TF  ++KACS L+      QI
Sbjct: 73  PDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQI 132

Query: 151 HTHIETFGFQYNLVVCSSLVDMYG-------------------------------KCNDV 179
           H HI  FG+ +++   +SL++ Y                                K  ++
Sbjct: 133 HAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEM 192

Query: 180 DGARRVFDLMGCRN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           D A  +F  M  +N  +SWT++I  + Q     EAL++F E    S   P+   LAS ++
Sbjct: 193 DMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQ-NSNVPPDNVSLASALS 251

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC+ LG L  GK  H    ++    + V+   L+DMYAKCG +  +  VF  +   SV  
Sbjct: 252 ACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQV 311

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +T++I G A +GLGR ++  F EM + G+KPN +TF  VL ACS++GLV+EG    +++ 
Sbjct: 312 WTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIE 371

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R Y + P  +HY C+VD+LGR G L+EA +  + + + P+   ++WG+LL A ++H  ++
Sbjct: 372 RDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNA--VIWGSLLKACQIHKNIE 429

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +  +    LIE +      YV ++N +A+  +W+     R  M+  G+ K PGCS + + 
Sbjct: 430 LGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLE 489

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
             T+ F AG+       E+ +  R + RK++E GYV     ++   V+DE +E IV  HS
Sbjct: 490 GTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHS 549

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+ +GL+    G TIRIMKNLR+C+DCH V  LIS I +RD V+RD  RFHHF++G 
Sbjct: 550 EKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGK 609

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 610 CSCGDYW 616


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 322/557 (57%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +  K GF SN F  N L++ Y +  +   AR +FD++ +  VVS+TS+++GY+  G 
Sbjct: 122 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 181

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL +F++M    V P+     +V+ A + + DL  GK IH  +   G ++   +  S
Sbjct: 182 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 241

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  MY K   V+ AR  F+ M   N++ W ++I  +A N  G EA+++FRE       R 
Sbjct: 242 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRV 300

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   + S + A A +G L   +   G + +S    +  V + L+DMYAKCGS+  +  VF
Sbjct: 301 DSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF 360

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R+++  VV ++ MI+G   +G G+ ++ L+NEM   G+ PND TF+G+L AC +SGLV 
Sbjct: 361 DRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 420

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + L  +   +GI P  +HY+CVVD+LGR G L++AY    S+ + P  G  +WG LL
Sbjct: 421 EGWE-LFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKP--GVSVWGALL 477

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA ++H +V +   A+ QL   +      YV LSN YA A  W  V ++R  M + G++K
Sbjct: 478 SACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNK 537

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           + G S +EI      F  G+    +  E+   L  LE+++K  GYV      V  D+  E
Sbjct: 538 DLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMES-VLHDLNHE 596

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             EE +  HSERLA+A+G+IS   G T+RI KNLR C +CH   KLIS +V+R+ ++RD 
Sbjct: 597 EIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDA 656

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF++G CSCGDFW
Sbjct: 657 KRFHHFKDGVCSCGDFW 673



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 191/388 (49%), Gaps = 5/388 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L  L  V+ +++ SG     F +   IN  +       A + F E+ EP+++ + +++ G
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y         + ++  M  + V PN FTF  V+KAC   +    GKQIH     +GF  N
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V +SLV MY K   +  AR VFD +  R VVSWTSII  + QN    EAL +F+E   
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR- 193

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           Q   +P+   L SV+ A  ++  L  GK  HG+V + G EF   +  +L  MYAK G V 
Sbjct: 194 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 253

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +   FNR+  P+++ + +MI G A  G G  ++ LF EMI++ I+ + +T    + A +
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G + E  + LD    K     D    T ++DM  + G +  A  +   +    D   +
Sbjct: 314 QVGSL-ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRV---ADKDVV 369

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIES 430
           LW  ++    LHG    A+   N++ ++
Sbjct: 370 LWSVMIMGYGLHGHGQEAICLYNEMKQA 397


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 334/576 (57%), Gaps = 7/576 (1%)

Query: 33  FIQQLQECKH---LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI+ LQ C     ++   + H + ++     +    N LIN Y +    ++ARQ+FD ML
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E ++VS+ +++  Y        AL +F +M       +EFT ++V+ AC    D +  K+
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H          NL V ++L+D+Y KC  ++ A +VF+ M  ++ V+W+S++  + Q+  
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL ++R     S ++ NQ  L+SVI AC++L  L+ GK  H V+ +SG   N  VAS
Sbjct: 246 YEEALLLYRRAQRMSLEQ-NQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVAS 304

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           + VDMYAKCGS+  S  +F+ +   ++  + ++I G AK+   +  + LF +M   G+ P
Sbjct: 305 SAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHP 364

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N+VTF  +L  C H+GLV+EG +    M   YG+ P+  HY+C+VD+LGR G L EAY+L
Sbjct: 365 NEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 424

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            KSI  +P     +WG+LL++ R+   +++A  A+ +L E   + A  +V LSN YA   
Sbjct: 425 IKSIPFEPTAS--IWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANK 482

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +WE +   R  ++   + K  G SW++I+D+ + F  G +   R  E+ ++L  L  +++
Sbjct: 483 QWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELR 542

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY       +  DVE   +EE++  HSE+LAL FGL+ +P+G T+RIMKNLR+C DCH
Sbjct: 543 KFGYKPSVEHELH-DVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCH 601

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  K  S    R  +VRD NRFHHF +G CSCG+FW
Sbjct: 602 EFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 322/557 (57%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +  K GF SN F  N L++ Y +  +   AR +FD++ +  VVS+TS+++GY+  G 
Sbjct: 107 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 166

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL +F++M    V P+     +V+ A + + DL  GK IH  +   G ++   +  S
Sbjct: 167 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 226

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  MY K   V+ AR  F+ M   N++ W ++I  +A N  G EA+++FRE       R 
Sbjct: 227 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRV 285

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   + S + A A +G L   +   G + +S    +  V + L+DMYAKCGS+  +  VF
Sbjct: 286 DSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF 345

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R+++  VV ++ MI+G   +G G+ ++ L+NEM   G+ PND TF+G+L AC +SGLV 
Sbjct: 346 DRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 405

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + L  +   +GI P  +HY+CVVD+LGR G L++AY    S+ + P  G  +WG LL
Sbjct: 406 EGWE-LFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKP--GVSVWGALL 462

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           SA ++H +V +   A+ QL   +      YV LSN YA A  W  V ++R  M + G++K
Sbjct: 463 SACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNK 522

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           + G S +EI      F  G+    +  E+   L  LE+++K  GYV      V  D+  E
Sbjct: 523 DLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMES-VLHDLNHE 581

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             EE +  HSERLA+A+G+IS   G T+RI KNLR C +CH   KLIS +V+R+ ++RD 
Sbjct: 582 EIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDA 641

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF++G CSCGDFW
Sbjct: 642 KRFHHFKDGVCSCGDFW 658



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 190/385 (49%), Gaps = 5/385 (1%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  V+ +++ SG     F +   IN  +       A + F E+ EP+++ + +++ GY  
Sbjct: 3   LDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQ 62

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
                  + ++  M  + V PN FTF  V+KAC   +    GKQIH     +GF  N+ V
Sbjct: 63  KNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFV 122

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +SLV MY K   +  AR VFD +  R VVSWTSII  + QN    EAL +F+E   Q  
Sbjct: 123 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR-QCN 181

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P+   L SV+ A  ++  L  GK  HG+V + G EF   +  +L  MYAK G V  + 
Sbjct: 182 VKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVAR 241

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             FNR+  P+++ + +MI G A  G G  ++ LF EMI++ I+ + +T    + A +  G
Sbjct: 242 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 301

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            + E  + LD    K     D    T ++DM  + G +  A  +   +    D   +LW 
Sbjct: 302 SL-ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRV---ADKDVVLWS 357

Query: 406 TLLSASRLHGRVDIAVEASNQLIES 430
            ++    LHG    A+   N++ ++
Sbjct: 358 VMIMGYGLHGHGQEAICLYNEMKQA 382


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/513 (39%), Positives = 300/513 (58%), Gaps = 35/513 (6%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN------ 177
           V P+ FT + V+KAC  L+D++ GK IH   +  GF  NL + + ++++YG C       
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 178 -------------------------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                                    D+DGA   F  M  +NV SWTS+I    Q  + +E
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           A+++F +   ++  RPN+  + SV+ ACA LG L  G++ H    +SG + N  V + L+
Sbjct: 126 AIDLFMKLEDEAV-RPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLI 184

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMY KCG +  + +VF  +   +VV++++MI G A +G    +L LF+EMI  G+KPN V
Sbjct: 185 DMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGV 244

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+G+LHACSH GL+DEG +   SM   YG+IP  +HY CVVD+  R G L+EA++   S
Sbjct: 245 TFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILS 304

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + + P+G  ++WG LL   ++H  +D+A EA   L E +      YV +SN YA A  WE
Sbjct: 305 MPIKPNG--VVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWE 362

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
           +   +R  MK  G+ K  G S + +    + F AG+    +  ++  +  +L  KMK RG
Sbjct: 363 DAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRG 422

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           Y   KT +V +D+E++ +E+ +  HSE+LA+ FGL++ P+G  IRIMKNLR+C DCH   
Sbjct: 423 Y-APKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAAL 481

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K+IS IV R+ +VRD NRFH FR+G CSC DFW
Sbjct: 482 KIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 5/178 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH    KSGF  N    N LI+ YV+    + AR++F EM E  VVS+++++AG    GQ
Sbjct: 164 VHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQ 223

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET-FGFQYNLVVCS 167
            + AL LF +M+   V PN  TF  ++ ACS +  +  G++    +   +G    +    
Sbjct: 224 AEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYG 283

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII---VAHAQNAQGHEALEMFREFN 221
            +VD++ +   ++ A      M  + N V W +++     H       EA++   E +
Sbjct: 284 CVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/617 (34%), Positives = 342/617 (55%), Gaps = 61/617 (9%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+SLA  + ++       +  + N ++  YVR  + + AR LF+   E +V+S+ +LM+G
Sbjct: 146 LVSLARHYFDLAPE---KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 103 YINMGQPQIALLLFQKMLGNLV--W-----------------------P--NEFTFATVI 135
           Y+  G+   A  LF +M G  V  W                       P  + FT+  V+
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 136 KACS-------------------------MLADLITGKQIHTHIETFGFQ--YNLVVCSS 168
              +                         M+A  I  + +    E F      N+   ++
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++  Y +   ++ A+ VFD M  ++ VSW +++ A++Q     E L++F E   +  +  
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG-RCGEWV 381

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+   A V++ CA +  L  G   HG ++R+G      V +AL+ MY KCG++  +   F
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAF 441

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VV++ +MI G A++G G+ +L++F+ M +   KP+D+T VGVL ACSHSGLV+
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 501

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +GI +  SM+  +G+    +HYTC++D+LGR GRL EA+ L K +  +PD    +WG LL
Sbjct: 502 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS--TMWGALL 559

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ ++ E   + A  YV LSN YA +G+W +   +R  M+  G+ K
Sbjct: 560 GASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKK 619

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SW+E++++ + F AG+ +     ++ + L +L+ +MK+ GYV   T +V  DVE+E
Sbjct: 620 VPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA-TDMVLHDVEEE 678

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+A+G+++IP G  IR++KNLR+C DCH+ FK IS I  R  ++RD 
Sbjct: 679 EKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDS 738

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHFR GSCSCGD+W
Sbjct: 739 NRFHHFRGGSCSCGDYW 755



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 152/355 (42%), Gaps = 32/355 (9%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           A+SL R   R   ++    +  L     L     +  E+     + ++ T N +I+ +  
Sbjct: 88  AASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP----VRDSVTYNVMISSHAN 143

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
                +AR  FD   E + VS+  ++A Y+  G+ + A  LF          N  T   V
Sbjct: 144 HGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----------NSRTEWDV 193

Query: 135 IKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           I   ++++  +   ++    E F      ++V  + +V  Y +  D+  ARR+FD    R
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV---SG 249
           +V +WT+++  +AQN    EA  +F          P ++ ++      A + R +   + 
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAM-------PERNAVSWNAMVAAYIQRRMMDEAK 306

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           ++ + +  R+   +N ++       YA+ G +  +  VF+ +     V++ +M+   ++ 
Sbjct: 307 ELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQG 361

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK-YGI 363
           G    +L LF EM   G   N   F  VL  C+    ++ G+Q    + R  YG+
Sbjct: 362 GCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 165/401 (41%), Gaps = 65/401 (16%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N  I  ++R  +   A +LF  M   +  +Y +++AGY   G+  +A  LF+     +  
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA----IPR 97

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+ +++ T++ A ++ + L   + +   +       YN+++ S     +     V  AR 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARH 152

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
            FDL   ++ VSW  ++ A+ +N +  EA  +F                           
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF--------------------------- 185

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
                         S  E++ +  +AL+  Y + G ++ + ++F+R+    VV++  M+ 
Sbjct: 186 -------------NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVS 232

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A+ G    +  LF+    R +     T+  V+   + +G+++E  +  D+M  +    
Sbjct: 233 GYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMPER---- 284

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +A  +  +V    +   +DEA +L     + P      W T+L+     G ++   EA 
Sbjct: 285 -NAVSWNAMVAAYIQRRMMDEAKEL---FNMMPCRNVASWNTMLTGYAQAGMLE---EAK 337

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
                  Q+ A ++  +   Y+  G  E    L  EM R G
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C  + +L     +H  ++++G+    F  N L+  Y +    + AR  F
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAF 441

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +EM E +VVS+ +++AGY   G  + AL +F  M      P++ T   V+ ACS
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/599 (35%), Positives = 340/599 (56%), Gaps = 53/599 (8%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           + L +  ++H+ I+K G +      N L+N Y +      A Q+FDEM   + +++ S++
Sbjct: 85  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL 144

Query: 101 AGY--INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
                 N+    +++         L  P++F F+ ++KAC+ L  +  G+Q+H H     
Sbjct: 145 TALNQANLSGKTLSVFSSVGSSSGLR-PDDFVFSALVKACANLGSIDHGRQVHCHFIVSE 203

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           +  + VV SSLVDMY KC  ++ A+ VFD +  +N +SWT+++  +A++ +  EALE+FR
Sbjct: 204 YANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFR 263

Query: 219 -------------------------------EFNYQSRDRPNQHMLASVINACASLGRLV 247
                                          E   +  D  +  +L+S++ ACA+L   +
Sbjct: 264 ILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASI 323

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           +G+  HG              +AL+DMYAKC  V  +  +F+R+ +  VV++TS+IVG A
Sbjct: 324 AGRQVHG--------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMA 369

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           ++G    +L L+++M+S G+KPN+VTFVG+++ACSH G V++G +   SM + YGI P  
Sbjct: 370 QHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSL 429

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HYTC++D+LGR+G LDEA  L  ++   PD     W  LLSA +  GR  + +  ++ L
Sbjct: 430 QHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPT--WAALLSACKRQGRGQMGIRIADHL 487

Query: 428 IESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + S + +  + Y+ LSN YA A  W  V   R ++    + K+PG S VE+R +T  FYA
Sbjct: 488 VSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYA 547

Query: 487 GNALFERGSEVLSLLRELERKMKER-GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           G        ++  LL++LE +M+ R GYV   T  +  D++++ +E+++  HSER A+A+
Sbjct: 548 GETSHPLKEDIFRLLKKLEEEMRIRNGYVP-DTSWILHDMDEQEKEKLLFWHSERSAVAY 606

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           GL+    G  IRI+KNLR+C DCH V K IS+I ER+ +VRD  R+HHF+ G CSC DF
Sbjct: 607 GLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 322/579 (55%), Gaps = 37/579 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T   ++  YVR      AR +F+E+     V + ++++GY+  G    A  LF++M+
Sbjct: 233 DDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMV 292

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKC 176
              V  +EFTF +V+ AC+     + GK +H  I      F  +  L V ++LV +Y K 
Sbjct: 293 SEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKG 352

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ------------- 223
             +  A+R+FD M  ++VVSW +I+  +  +    +A+E+F+   Y+             
Sbjct: 353 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYV 412

Query: 224 ----SRD-------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
               S D             +P  +  A  I AC  LG L  G+  H  +V+ G E ++ 
Sbjct: 413 HGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNS 472

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+ MYAKCG+VN +  VF  + N   V++ +MI    ++G GR +L+LF++M++ G
Sbjct: 473 AGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEG 532

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           I P+ ++F+ +L AC+H+GLVDEG  + +SM R +GI P   HY  ++D+LGR+GR+ EA
Sbjct: 533 IDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEA 592

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L K++  +P   P +W  +LS  R +G ++    A++QL     Q    Y+ LSNTY+
Sbjct: 593 RDLIKTMPFEPT--PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYS 650

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG W +   +R  M+  G+ KEPGCSW+E+  + + F  G+       EV   L  +  
Sbjct: 651 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGA 710

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +M++ GYV   T  V  D+E   +E I+  HSE+LA+ FGL+ +P G T+ ++KNLR+C 
Sbjct: 711 RMRKLGYV-PDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICG 769

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH     +S  V R+ VVRDV RFHHF++G CSCG++W
Sbjct: 770 DCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 10/302 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +   I  +  L +  + N +++ Y+       A ++F  M   N +S+  +++GY++ G 
Sbjct: 357 IAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGL 416

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF +M    V P ++T+A  I AC  L  L  G+Q+H H+   GF+ +    ++
Sbjct: 417 SEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNA 476

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY KC  V+ AR VF +M   + VSW ++I A  Q+  G EALE+F +   +  D P
Sbjct: 477 LLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGID-P 535

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKV 287
           ++    +++ AC   G +  G      + R  G    +   + L+D+  + G +  +  +
Sbjct: 536 DRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 595

Query: 288 FNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
              +   P+   + +++ G    G    G ++ D    MI +    +D T++ + +  S 
Sbjct: 596 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ----HDGTYILLSNTYSA 651

Query: 344 SG 345
           +G
Sbjct: 652 AG 653



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 47/340 (13%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           V  +SLV  +     +  A   FD +    R+ V   +++ A A+ +    A+ +F    
Sbjct: 95  VAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALL 154

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVA--HGVVVRSGCEFNDVVASALVDMYAKCG 279
                RP+ +   ++I+A   +  L +      H  V++SG      V++AL+ +Y KC 
Sbjct: 155 GSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCD 214

Query: 280 SVNYS---DKVFNRISNPSVVTYTSMIVGAAKYG------------LGRF---------- 314
           +   S    KV + + +   +T+T+M+VG  + G             G+F          
Sbjct: 215 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 274

Query: 315 ---------SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGII 364
                    + +LF  M+S  +  ++ TF  VL AC+++G    G   H   +  +   +
Sbjct: 275 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFV 334

Query: 365 PDAKHYT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           P+A       +V +  + G++  A ++  ++ +      + W T+LS     G +D AVE
Sbjct: 335 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK---DVVSWNTILSGYIDSGCLDKAVE 391

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
               +   N     +++ + + Y   G  E+   L ++M+
Sbjct: 392 VFKVMPYKNDL---SWMVMVSGYVHGGLSEDALKLFNQMR 428


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 332/540 (61%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + A++LFDE+   +VVS+ ++++GY   G  + AL LF++M+   V P+
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T+ TV+ AC+    +  G+Q+H+ ++  GF  NL + ++L+D+Y KC +V+ A  +F 
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +       EAL +F+E   +S + PN   + SV+ ACA LG + 
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSVLPACAHLGAID 314

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMYAKCG +  + +VFN + + S+ ++ +MI G
Sbjct: 315 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 374

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    S DLF+ M   GI+P+D+TFVG+L ACSHSG++D G     SM + Y + P
Sbjct: 375 FAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTP 434

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG +G   EA ++  +++++PDG  ++W +LL A ++HG V++A   + 
Sbjct: 435 KLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG--VIWCSLLKACKMHGNVELAESFAQ 492

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            LI+   +  ++Y+ LSN YA AG WE+V  +R+ +    + K PGCS +E+    + F 
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFV 552

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    +  E+  +L E+E  ++E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 553 VGDKFHPQNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIAF 611

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS   G  + I+KNLR+CR+CH+  KL+S I +R+ V RD  RFHHFR+G CSC D+W
Sbjct: 612 GLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 183/374 (48%), Gaps = 36/374 (9%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F+ + EPN + + +++ G+     P  +L L+  M+   + PN +TF  ++K+C+ 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMY--------------------------- 173
                 G+QIH  +   GF  +L V +SL+ MY                           
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 174 ----GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
                   D+  A+++FD +  ++VVSW ++I  +A+     EALE+F E   +   RP+
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM-MKMNVRPD 195

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +    +V++ACA  G +  G+  H  V   G + N  + +AL+D+Y+KCG V  +  +F 
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +S   V+++ ++I G     L + +L LF EM+  G  PNDVT + VL AC+H G +D 
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDI 315

Query: 350 GIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           G   H+    R  G+   +   T ++DM  + G ++ A+++  S+          W  ++
Sbjct: 316 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS---WNAMI 372

Query: 409 SASRLHGRVDIAVE 422
               +HGR D + +
Sbjct: 373 FGFAMHGRADASFD 386



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 152/329 (46%), Gaps = 49/329 (14%)

Query: 30  KAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++ ++  L  C H  S+     VHS +   GF SN   +N LI+ Y +  + + A  LF 
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            +   +V+S+ +L+ GY +M   + ALLLFQ+ML +   PN+ T  +V+ AC+ L  +  
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDI 315

Query: 147 GKQIHTHIETF--GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           G+ IH +I+    G      + +SL+DMY KC D++ A +VF+ M  +++ SW ++I   
Sbjct: 316 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 375

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           A + +   + ++F      SR R                              + G E +
Sbjct: 376 AMHGRADASFDLF------SRMR------------------------------KIGIEPD 399

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-----NPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           D+    L+   +  G ++    +F  ++      P +  Y  MI      GL + + ++ 
Sbjct: 400 DITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMI 459

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N M    ++P+ V +  +L AC   G V+
Sbjct: 460 NTM---EMEPDGVIWCSLLKACKMHGNVE 485



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+  VF  I  P+ + + +MI G A       SL L+  M+S G+ PN  TF  +L +C+
Sbjct: 16  YATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCA 75

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            S    EG Q +     K G   D   +T ++ M  +  RL++AYK+
Sbjct: 76  KSKTFTEG-QQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKV 121


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 328/534 (61%), Gaps = 6/534 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +I  Y        A+++FDE+   +VVS+ ++++GY  +G+ + AL LF +M+   V P+
Sbjct: 150 MITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPD 209

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T ATV+  C+   ++  G+QIH+ I+  GF  NL + ++L+D+Y KC +++ A  +F+
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +A      EAL +F+E   +  + PN   + S++ ACA LG + 
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEM-LKLGETPNDVTMLSILPACAHLGAID 328

Query: 248 SGKVAHGVVVRS--GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G   N  + ++L+DMYAKCG++  +++VF+ I N S+ +  +MI G
Sbjct: 329 IGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    + DL + M   GI+P+D+TFVG+L ACSH+GL D G +   SM   Y I P
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP 448

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LGR+G   EA +L  S+ ++PDG  ++WG+LL A ++H  +++    + 
Sbjct: 449 KLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDG--VIWGSLLKACKIHKNLELGELIAQ 506

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +L++   +   +YV LSN YA +  W++V  +R+ +   G+ K PGCS +EI    + F 
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFL 566

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    +  E+  +L E++  + E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 567 IGDKFHPQNKEIYKMLEEIDSLLAETGFV-SDTSEVLQEMEEELKEGALSYHSEKLAIAF 625

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           GLIS   G  +RI+KNLR+CR+CH+  KLIS I +R+ + RD +RFHHF++G C
Sbjct: 626 GLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 185/376 (49%), Gaps = 40/376 (10%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  + EPN +S+ +++ G+     P  AL L+  M+   + PN +TF  + K+C+ 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC------------------------ 176
                 GKQIH  I  +G   +L V +SL+ MY +                         
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 177 -------NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
                   ++D A+++FD +  ++VVSW ++I  +A+  +  EALE+F E   +   +P+
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEM-MKMDVKPD 209

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  +A+V++ C   G +  G+  H  +   G   N  + +AL+D+Y+KCG +  +  +F 
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +    V+++ ++I G A     + +L +F EM+  G  PNDVT + +L AC+H G +D 
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDI 329

Query: 350 GIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI--QVDPDGGPLLWGT 406
           G   H+    +  GII +    T ++DM  + G ++ A ++  +I  +       +++G 
Sbjct: 330 GRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGF 389

Query: 407 LLSASRLHGRVDIAVE 422
                 +HGR D A +
Sbjct: 390 -----AMHGRADAAFD 400



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 46/300 (15%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I   GF SN   +N LI+ Y +  + + A  LF+ +   +V+S+ +L+ GY  +  
Sbjct: 232 IHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINH 291

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET--FGFQYNLVVC 166
            + ALL+FQ+ML     PN+ T  +++ AC+ L  +  G+ IH +I+    G   N  + 
Sbjct: 292 HKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQ 351

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+DMY KC +++ A +VFD +  +++ S  ++I   A + +   A ++          
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMK----- 406

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
                                          + G E +D+    L+   +  G  +   K
Sbjct: 407 -------------------------------KDGIEPDDITFVGLLSACSHAGLSDLGRK 435

Query: 287 VFNRIS-----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           +F  ++      P +  Y  MI    + GL + + +L N M    ++P+ V +  +L AC
Sbjct: 436 IFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMT---MEPDGVIWGSLLKAC 492



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+  VF  I  P+ +++ +MI G A       +L+L+  MIS G+ PN  TF  +  +C+
Sbjct: 30  YAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCA 89

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            S    EG Q + +   KYG+  D   +T ++ M  + G +++A+K+
Sbjct: 90  KSKAAQEGKQ-IHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKV 135


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 322/563 (57%), Gaps = 4/563 (0%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L SL  +H   LK  F+ +    N  +  Y +      A+++F  +    + S+ +L+ G
Sbjct: 395 LPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGG 454

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y     P+++L    +M  + + P+ FT  +++ ACS L  L  GK++H  I     + +
Sbjct: 455 YAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 514

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           L V  S++ +Y  C ++   + +FD M   ++VSW ++I  H QN     AL +FR+   
Sbjct: 515 LFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVL 574

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
               +P    + +V  AC+ L  L  G+ AH   ++   E N  +A +++DMYAK G++ 
Sbjct: 575 YGI-QPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAIT 633

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S KVFN +   S  ++ +MI+G   +G  + ++ LF EM   G  P+D+TF+GVL AC+
Sbjct: 634 QSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACN 693

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           HSGL+ EG+++LD M   +G+ P+ KHY CV+DMLGR G+LD A ++A  +  +PD G  
Sbjct: 694 HSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVG-- 751

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W +LLS  R+H  +++  + + +L     +    YV LSN YA  G+W++V  +R  MK
Sbjct: 752 IWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMK 811

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
              + K+ GCSW+E+  + ++F  G    +   E+ SL   LE K+ + GY    + +  
Sbjct: 812 EMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQH 871

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
              E+E  E++ G HSE+LA+ +GLI   +G T+R+ KNLR+C DCH+  KLIS ++ER+
Sbjct: 872 DLSEEEKIEQLRG-HSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMERE 930

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            VVRD  RFHHF  G CSCGD+W
Sbjct: 931 IVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH  ++K+G + + F  N L++ Y        A +LFD M E N+VS+ S++  + + G
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
                +            P+  T  TV+  C+   ++  GK +H           LVV +
Sbjct: 268 DDGAFM------------PDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNN 315

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD- 226
           +L+DMY K   +  ++ +F L   +NVVSW +++   +     H   ++ R+    S D 
Sbjct: 316 ALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDV 375

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           + ++  + + +  C     L S K  H   ++    +++++A+A V  YAKCGS++Y+ +
Sbjct: 376 KADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQR 435

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           VF+ I + ++ ++ ++I G A+    R SLD   +M + G+ P++ T   +L ACS
Sbjct: 436 VFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACS 491



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           S+      +I  Y        +R  FD +   N+  + ++++ Y         L +F KM
Sbjct: 118 SDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 120 LGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           +    + P+ FTF  VIKAC+ ++D+  G  +H  +   G   +L V ++LV  YG    
Sbjct: 178 ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGF 237

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           V  A ++FD+M  RN+VSW S+I   + N  G +   M           P+   + +V+ 
Sbjct: 238 VSDALKLFDIMPERNLVSWNSMIRVFSDN--GDDGAFM-----------PDVATVVTVLP 284

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA    +  GK  HG  V+   +   VV +AL+DMY+K G +  S  +F   +N +VV+
Sbjct: 285 VCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVS 344

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMI--SRGIKPNDVTFVGVLHAC 341
           + +M+ G +  G    + DL  +M+  S  +K ++VT +  +  C
Sbjct: 345 WNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 145/313 (46%), Gaps = 19/313 (6%)

Query: 134 VIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++A     D+  G++IH  +  +   + + V+C+ ++ MY  C   D +R  FD +  +
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSK 149

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           N+  W ++I ++++N   HE LEMF +   ++   P+      VI ACA +  +  G   
Sbjct: 150 NLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAV 209

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           HG+VV++G   +  V +ALV  Y   G V+ + K+F+ +   ++V++ SMI         
Sbjct: 210 HGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMI--------- 260

Query: 313 RFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
                +F++    G   P+  T V VL  C+    +  G + +     K  +  +     
Sbjct: 261 ----RVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVG-KGVHGWAVKLSLDKELVVNN 315

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            ++DM  + G + ++  + K   ++ +   + W T++      G +    +   Q++  +
Sbjct: 316 ALMDMYSKWGCIIDSQMIFK---LNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGS 372

Query: 432 QQVANAYVTLSNT 444
           + V    VT+ N 
Sbjct: 373 EDVKADEVTILNA 385


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 326/557 (58%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++K GF  +   +  L++ Y    +   A +LFDE+ + +VV++T+L +GY   G+
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ LF+KM+   V P+ +    V+ AC  + DL +G+ I  ++E    Q N  V ++
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV++Y KC  ++ AR VFD M  +++V+W+++I  +A N+   E +E+F +   Q   +P
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQM-LQENLKP 311

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q  +   +++CASLG L  G+    ++ R     N  +A+AL+DMYAKCG++    +VF
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    +V   + I G AK G  + S  +F +    GI P+  TF+G+L  C H+GL+ 
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G++  +++   Y +    +HY C+VD+ GR G LD+AY+L   + + P+   ++WG LL
Sbjct: 432 DGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA--IVWGALL 489

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           S  RL     +A     +LI      A  YV LSN Y++ G W+    +R  M + G+ K
Sbjct: 490 SGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKK 549

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SW+E+  + + F A +       ++ + L +L  +M+  G+V   T  VF DVE+E
Sbjct: 550 IPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP-TTEFVFFDVEEE 608

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++G HSE+LA+A GLIS   G  IR++KNLR+C DCH+V KLIS I  R+ VVRD 
Sbjct: 609 EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F NGSCSC D+W
Sbjct: 669 NRFHCFTNGSCSCNDYW 685



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 192/366 (52%), Gaps = 9/366 (2%)

Query: 36  QLQECKHLISLA-------SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           ++Q+ K LIS+A        +H  ++      +TF +N L+   +  ++T+ +  LF   
Sbjct: 12  KVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHT 71

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
             PN+  Y SL+ G++N       L LF  +  + ++ + FTF  V+KAC+  +    G 
Sbjct: 72  QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H+ +   GF +++   +SL+ +Y     ++ A ++FD +  R+VV+WT++   +  + 
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +  EA+++F++   +   +P+ + +  V++AC  +G L SG+     +     + N  V 
Sbjct: 192 RHREAIDLFKKM-VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR 250

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           + LV++YAKCG +  +  VF+ +    +VT+++MI G A     +  ++LF +M+   +K
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+  + VG L +C+  G +D G   + S+  ++  + +      ++DM  + G +   ++
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCGAMARGFE 369

Query: 389 LAKSIQ 394
           + K ++
Sbjct: 370 VFKEMK 375


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 326/557 (58%), Gaps = 11/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   LK GF S+ F    L+N Y +  +   AR++FD M++ +VV + SL+ GY   G+
Sbjct: 134 IHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGE 193

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             IAL LF++M       + F++  ++   S    + + +++   +       NLV  ++
Sbjct: 194 IDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESARKLFDQMPC----RNLVSWNA 245

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +++ Y K  D D A  +F  M   ++V+W  +I  +  N Q  +A++MF     +   RP
Sbjct: 246 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFF-MMLKLGSRP 304

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   L SV++A + L  L  G+  H  + ++G E + ++ ++L++MYAKCG +  +  VF
Sbjct: 305 SHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 364

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I    V  +T++IVG   +G+   +L LF EM   G+KPN + F+GVL+AC+H+GLVD
Sbjct: 365 RAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVD 424

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q+ D M  +Y I P  +HY C+VD+L R G L+EA    +++ + P+   ++W +LL
Sbjct: 425 DGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPN--KVIWMSLL 482

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
             SR HG++DI   A+ ++IE   +    Y+ LSN YA +G WE V  +R  M + G  K
Sbjct: 483 GGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRK 542

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCS VE +   + F  G+    +  E+ + + E++ K+K  G+V   T ++     ++
Sbjct: 543 DPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEK 602

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSERLA+AFGLI++  GI IRIMKNLR+C DCH V KL+S I  R+ +VRD 
Sbjct: 603 EKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDN 662

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF+NGSCSC D+W
Sbjct: 663 CRFHHFKNGSCSCMDYW 679



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 185/375 (49%), Gaps = 16/375 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCY--VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           +H+  LK+   ++ F  + L+  Y   ++     AR +FD +   +++ + +++  Y+  
Sbjct: 32  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 91

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                 ++LF +++   + P+ FT   VIK C+ L  +  GKQIH      GF  ++ V 
Sbjct: 92  QFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQ 150

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            SLV+MY KC ++D AR+VFD M  ++VV W S+I  +A+  +   AL++F E     RD
Sbjct: 151 GSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM--PERD 208

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             +  +L   ++ C  +      + A  +  +  C  N V  +A+++ Y K G  + + +
Sbjct: 209 AFSWTVLVDGLSKCGKV------ESARKLFDQMPCR-NLVSWNAMINGYMKSGDFDSALE 261

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F ++    +VT+  MI G    G    ++ +F  M+  G +P+  T V VL A S   +
Sbjct: 262 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           + +G + + S   K G   D    T +++M  + G ++ A  + ++IQ    G    W  
Sbjct: 322 LGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGH---WTA 377

Query: 407 LLSASRLHGRVDIAV 421
           ++    +HG  + A+
Sbjct: 378 IIVGLGIHGMANHAL 392



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 150/309 (48%), Gaps = 27/309 (8%)

Query: 165 VCSSLVDMYG--KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           V S L+ +Y   K ND+  AR +FD +  R+++ W +II  + +N   H+ + +F E  +
Sbjct: 47  VSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 106

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +    P+   L  VI  CA LG +  GK  HG+ ++ G   +  V  +LV+MY+KCG ++
Sbjct: 107 EY--LPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEID 164

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + KVF+ + +  VV + S+I G A+ G    +L LF EM  R    +  ++  ++   S
Sbjct: 165 CARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLS 220

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G V+   +  D M  +     +   +  +++   ++G  D A +L   +   P    +
Sbjct: 221 KCGKVESARKLFDQMPCR-----NLVSWNAMINGYMKSGDFDSALELFYQM---PIWDLV 272

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV--TLSNTYALA----GEWENVHS 456
            W  +++   L+G+   AV+    +++   + ++A +   LS    LA    G W     
Sbjct: 273 TWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRW----- 327

Query: 457 LRSEMKRTG 465
           + S M++ G
Sbjct: 328 IHSYMEKNG 336


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 328/565 (58%), Gaps = 17/565 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAGYI 104
           + +H  ++K+G     F    LI+ Y +      AR++FDE        V Y +L+AGY 
Sbjct: 76  SQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYS 135

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
              +   A+LLF++M    V  N  T   +I  C+    L  G  +H     FG   +L 
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLS 195

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V + L+ MY +C  VD AR++FD M  + +++W ++I  +AQN      L+++R+  +  
Sbjct: 196 VGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTG 255

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              P+   L  V+++CA LG   +G+     +  SG  FN  + +AL++MYA+CG++  +
Sbjct: 256 -IVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKA 314

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             +F+ ++  +V+++T++I G   +G G  ++ LF+EMIS    P+   FV VL ACSH+
Sbjct: 315 RAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHA 374

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GL ++G+ +  +M R YG+ P  +HY+CVVD+LGR GRL+EA KL  S+ V+PDG   +W
Sbjct: 375 GLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGA--VW 432

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G LL A ++H  V++A  A  ++IE        YV LSN ++ AG  E +  +R  M+  
Sbjct: 433 GALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRER 492

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            + KEPGCS+VE + + + F AG+    +  E+  +L  LE  +K R   GG       D
Sbjct: 493 KLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRR---GGSN-----D 544

Query: 525 VEDEAR-EEIV---GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
            + E+R EE++   G+HSE+LA+AFGLI+   G  I ++KNLR+C DCH   KL+S+IV+
Sbjct: 545 NDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVD 604

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  VVRD  RFHHF+NG CSC D+W
Sbjct: 605 RQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 191/366 (52%), Gaps = 11/366 (3%)

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           Q AL L+ +ML +   PN FTF    K+C+ L+  + G Q+H H+   G +    V +SL
Sbjct: 38  QEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSL 97

Query: 170 VDMYGKCNDVDGARRVFDL-MGCRNV-VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           + MY KC+ +  AR+VFD     RN+ V + ++I  ++ N++  +A+ +FR+   +    
Sbjct: 98  ISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSV 157

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
               ML  +I  CA    L  G   H   VR G + +  V + L+ MY +CGSV+++ K+
Sbjct: 158 NAVTMLG-LIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKL 216

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +    ++T+ +MI G A+ GL    LDL+ +M   GI P+ VT VGVL +C+H G  
Sbjct: 217 FDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAH 276

Query: 348 DEGIQHLDSM-YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
             G +    +    +G  P  K+   +++M  R G L +A  +   +    +   + W  
Sbjct: 277 AAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGMT---EKNVISWTA 331

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRT- 464
           +++   +HG+ ++AV+  +++I S++     A+V++ +  + AG  E      + M+R  
Sbjct: 332 IIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDY 391

Query: 465 GIHKEP 470
           G+   P
Sbjct: 392 GLQPGP 397



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 2/268 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL    S+H+  ++ G   +    N L+  YVR      AR+LFD M E  ++++ ++++
Sbjct: 174 HLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMIS 233

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G     L L++KM    + P+  T   V+ +C+ L     G+++   IE  GF +
Sbjct: 234 GYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGF 293

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N  + ++L++MY +C ++  AR +FD M  +NV+SWT+II  +  + QG  A+++F E  
Sbjct: 294 NPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM- 352

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGS 280
             S + P+     SV++AC+  G    G      + R  G +      S +VD+  + G 
Sbjct: 353 ISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           +  + K+   +S          ++GA K
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALLGACK 440


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 336/583 (57%), Gaps = 16/583 (2%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +Q L++CK L +L  VH+ ++ +G + +T+ L+ ++     +  T  A  +F+ +  P +
Sbjct: 13  LQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTH-ALSIFNHIPNPTI 71

Query: 94  VSYTSLMAGYINM-GQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIH 151
             Y +L++   N+     IA  L+ ++L +    PN FTF ++ KAC     L  G+ +H
Sbjct: 72  FLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALH 131

Query: 152 THIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           TH+  F     +  V ++L++ Y KC  V   R +F+ +   ++ SW SI+ A+  N+  
Sbjct: 132 THVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGA 191

Query: 211 --------HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
                    E L +F E   +S  + N+  L ++I+ACA LG L  G  AH  V++   +
Sbjct: 192 ICEDVSLSLEVLTLFIEMQ-KSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLK 250

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            N  V +AL+DMY+KCG ++ + ++F+++ +   + Y +MI G A +G G  +LDLF +M
Sbjct: 251 LNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKM 310

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G+ P+DVT V  + +CSH GLV+EG    +SM   YG+ P  +HY C+VD+LGR GR
Sbjct: 311 TLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGR 370

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L EA +   ++ + P+   ++W +LL A+R+HG ++I       LI+   + +  YV LS
Sbjct: 371 LREAEERVLNMPMKPNA--VIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLS 428

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N YA    W++V  +R  MK  GI+K PG S VE+    + F  G+    R  E+   L 
Sbjct: 429 NMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLE 488

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
           E+ R++ E G+   +T  V  D+E+E +E+ +  HSERLA+AF LI+      IRI+KNL
Sbjct: 489 EMSRRLHEYGH-KPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNL 547

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH   KLIS I ER+ +VRD NRFHHF+ G+CSC D+W
Sbjct: 548 RVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 133/312 (42%), Gaps = 39/312 (12%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-------LVVCSSLVDMYGKCND 178
           PN  +    ++       L T KQ+H H+ T G  ++       L++ S++V  +     
Sbjct: 4   PNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTH----- 58

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQ-NAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
              A  +F+ +    +  + ++I + A      H A  ++      +  +PN     S+ 
Sbjct: 59  ---ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLF 115

Query: 238 NACASLGRLVSGKVAHGVVVR---SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
            AC S   L  G+  H  V++     C+    V +AL++ YAKCG V     +FN+IS P
Sbjct: 116 KACGSQPWLRHGRALHTHVLKFLEPTCD--PFVQAALLNYYAKCGKVGACRYLFNQISKP 173

Query: 295 SVVTYTSMIVG--------AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            + ++ S++               L    L LF EM    IK N+VT V ++ AC+  G 
Sbjct: 174 DLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGA 233

Query: 347 VDEGI-QHLDSMYRKYGIIPDAKHY--TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           + +G   H+  +     +     H+  T ++DM  + G LD A +L   +   P    L 
Sbjct: 234 LSQGAWAHVYVLKHNLKL----NHFVGTALIDMYSKCGCLDLACQLFDQL---PHRDTLC 286

Query: 404 WGTLLSASRLHG 415
           +  ++    +HG
Sbjct: 287 YNAMIGGFAIHG 298


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 336/570 (58%), Gaps = 11/570 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L E K + SL S  S +++S    +   +N  +N +        AR+LF++M++ +VV++
Sbjct: 223 LSEGKFIYSLVS--SRVMES----DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTW 276

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
             ++  Y+       A+ LF ++  + +  N+ TF  ++   + L  L  GK IH  ++ 
Sbjct: 277 NIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKE 336

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G+  ++VV ++L+ +YG+C     A ++F  MG ++V++WT + VA+AQN    EAL++
Sbjct: 337 AGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQL 396

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F+E   + R RP    L +V++ CA L  L  G+  H  ++ +G     VV +AL++MY 
Sbjct: 397 FQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYG 455

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG +  +  VF +++   ++ + SM+   A++G    +L LFN+M   G K + V+FV 
Sbjct: 456 KCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVS 515

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-V 395
           VL A SHSG V +G Q+  +M + + I P  + Y CVVD+LGR GR+ EA  +   +   
Sbjct: 516 VLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGC 575

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
            PDG  +LW TLL A R H + D A  A+ Q++E +   + AYV LSN YA AG+W+ V+
Sbjct: 576 LPDG--ILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVN 633

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R  M+  G+ KEPG S +EI ++ + F  G+    R   + + L  L  +M+  GY+ 
Sbjct: 634 RMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI- 692

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
             T ++  DVEDE +E+++  HSERLA+AFGL+S P G  +R++KNLR+C DCH   K I
Sbjct: 693 PDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYI 752

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S +  R+ +VRD +RFH+F++G CSC D+W
Sbjct: 753 SKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+   F  +++ CS   ++  G+++H H+   GF+ N +VC  L+ MY +C  V  A++V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLG 244
           F+++  ++V +WT +I  + Q      AL MF  +  Q  D  P +    +++NACAS  
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMF--YQMQEEDVMPTKVTYVAILNACASTE 120

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G   HG +++ G E +  V +AL++MY KCGSV  +   F R+ +  VV++T+MI 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
              ++     +  L+  M   G+ PN +T   V +A      + EG + + S+     + 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVME 239

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS----------ASRLH 414
            D +     ++M G  G L +A +L + + VD D   + W  +++          A RL 
Sbjct: 240 SDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRD--VVTWNIVITFYVQNENFGEAVRLF 296

Query: 415 GRV 417
           GR+
Sbjct: 297 GRL 299



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 172/363 (47%), Gaps = 7/363 (1%)

Query: 31  AHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           A F+  LQ C   K++     VH  +   GF  N     HLI  Y +      A+Q+F+ 
Sbjct: 6   AFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEI 65

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +   +V ++T ++  Y   G    AL +F +M    V P + T+  ++ AC+    L  G
Sbjct: 66  LERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDG 125

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            +IH  I   GF+ ++ V ++L++MY KC  V GA   F  +  R+VVSWT++I A  Q+
Sbjct: 126 MEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQH 185

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            Q   A  ++R         PN+  L +V NA      L  GK  + +V     E +  V
Sbjct: 186 DQFALARWLYRRMQLDGV-VPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRV 244

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            ++ ++M+   G +  + ++F  + +  VVT+  +I    +      ++ LF  +   GI
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 328 KPNDVTFVGVLHA-CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           K ND+TFV +L+   S + L    + H   + ++ G   D    T ++ + GR     +A
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIH--ELVKEAGYDRDVVVATALMSLYGRCEAPGQA 362

Query: 387 YKL 389
           +K+
Sbjct: 363 WKI 365



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 4/194 (2%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+     +++  C+S   +  G+  H  V   G E N++V   L+ MYA+CGSV  + +
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF  +    V  +T MI    + G    +L +F +M    + P  VT+V +L+AC+ +  
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           + +G++ +     + G   D    T +++M  + G +  A+   K ++       + W  
Sbjct: 122 LKDGME-IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE---HRDVVSWTA 177

Query: 407 LLSASRLHGRVDIA 420
           +++A   H +  +A
Sbjct: 178 MIAACVQHDQFALA 191


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/617 (33%), Positives = 341/617 (55%), Gaps = 61/617 (9%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+SLA  + ++       +  + N ++  YVR  + + AR LF+   E +V+S+ +LM+G
Sbjct: 21  LVSLARHYFDLAPE---KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 77

Query: 103 YINMGQPQIALLLFQKMLGNLV--WP-------------------------NEFTFATVI 135
           Y+  G+   A  LF +M G  V  W                          + FT+  V+
Sbjct: 78  YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 137

Query: 136 KACS-------------------------MLADLITGKQIHTHIETFGFQ--YNLVVCSS 168
              +                         M+A  I  + +    E F      N+   ++
Sbjct: 138 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 197

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++  Y +   ++ A+ VFD M  ++ VSW +++ A++Q     E L++F E   +  +  
Sbjct: 198 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG-RCGEWV 256

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+   A V++ CA +  L  G   HG ++R+G      V +AL+ MY KCG++  +   F
Sbjct: 257 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAF 316

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    VV++ +MI G A++G G+ +L++F+ M +   KP+D+T VGVL ACSHSGLV+
Sbjct: 317 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 376

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +GI +  SM+  +G+    +HYTC++D+LGR GRL EA+ L K +  +PD    +WG LL
Sbjct: 377 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS--TMWGALL 434

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ ++ E   + A  YV LSN YA +G+W +   +R  M+  G+ K
Sbjct: 435 GASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKK 494

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SW+E++++ + F AG+ +     ++ + L +L+ +MK+ GYV   T +V  DVE+E
Sbjct: 495 VPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA-TDMVLHDVEEE 553

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+A+G+++IP G  IR++KNLR+C DCH+ FK IS I  R  ++RD 
Sbjct: 554 EKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDS 613

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHFR GSCSCGD+W
Sbjct: 614 NRFHHFRGGSCSCGDYW 630



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 138/311 (44%), Gaps = 28/311 (9%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + ++ T N +I+ +       +AR  FD   E + VS+  ++A Y+  G+ + A  LF  
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF-- 60

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKC 176
                   N  T   VI   ++++  +   ++    E F      ++V  + +V  Y + 
Sbjct: 61  --------NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 112

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
            D+  ARR+FD    R+V +WT+++  +AQN    EA  +F          P ++ ++  
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM-------PERNAVSWN 165

Query: 237 INACASLGRLV---SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
               A + R +   + ++ + +  R+   +N ++       YA+ G +  +  VF+ +  
Sbjct: 166 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMPQ 220

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
              V++ +M+   ++ G    +L LF EM   G   N   F  VL  C+    ++ G+Q 
Sbjct: 221 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 280

Query: 354 LDSMYRK-YGI 363
              + R  YG+
Sbjct: 281 HGRLIRAGYGV 291



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C  + +L     +H  ++++G+    F  N L+  Y +    + AR  F
Sbjct: 257 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAF 316

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +EM E +VVS+ +++AGY   G  + AL +F  M      P++ T   V+ ACS
Sbjct: 317 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 370


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/607 (37%), Positives = 337/607 (55%), Gaps = 52/607 (8%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPNVVSY 96
           C  L     +H+ I ++    +++ + +L+     L    V      LF ++  PN   Y
Sbjct: 21  CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLY 80

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           ++L+  Y   G    ++ L+  ML N V P  FTF+ +    S+L +   G Q+H H   
Sbjct: 81  SALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQLHLHAFL 137

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA----------- 205
           FGF  +L V ++++ MY K   +D AR+VFD M  R+VV+WT +IVA+A           
Sbjct: 138 FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACEL 197

Query: 206 --------------------QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
                               QNA   +AL+ FR+   ++    ++  L   I+ACA LG 
Sbjct: 198 FVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMR-EAGVVTDEITLVGAISACAQLG- 255

Query: 246 LVSG------KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            VSG      ++A     R G   N  V SAL+DMY+KCG+V  +  VF  +   +V +Y
Sbjct: 256 -VSGYADWIREIAESS--RFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSY 312

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           +SMIVG A +G  R ++ LF EM+  GIKPN VTFVG+  ACSH+G+V++G Q   +M  
Sbjct: 313 SSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKE 372

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            YG+ P A HY C+ D+LGR G L++A +L +++ ++P+GG  +WG LL AS +HG  D+
Sbjct: 373 CYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGG--VWGALLGASHIHGNPDV 430

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           A  AS  L E        Y+ LS TYALA +W++V  +R  M+   + K PGCSWVE ++
Sbjct: 431 AEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKN 490

Query: 480 Q-TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
              + F+AG+      +E+   L +L +++K  GY   K   V  D++DE +  ++  HS
Sbjct: 491 GIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGY-QPKLNSVPYDIDDEGKRCLLVSHS 549

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LALA+GL+S   G TI+IMKNLR+C DCH V    S +  R  +VRD  RFHHF NG+
Sbjct: 550 EKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGA 609

Query: 599 CSCGDFW 605
           CSC +FW
Sbjct: 610 CSCNNFW 616


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 324/557 (58%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   ++ G +S+    +  ++ Y+R      A+ +FD++   NV ++ +++ G      
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF +M     +P+  TF  ++ A      L   K++H++    G   +L V ++
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNA 475

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY KC +   A++VFD M  RNV +WT +I   AQ+  GHEA  +F +   +    P
Sbjct: 476 LVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQM-LREGIVP 534

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +     S+++ACAS G L   K  H   V +G   +  V +ALV MYAKCGSV+ + +VF
Sbjct: 535 DATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVF 594

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +    V ++T MI G A++G G  +LDLF +M   G KPN  +FV VL ACSH+GLVD
Sbjct: 595 DDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVD 654

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +   S+ + YGI P  +HYTC+VD+LGR G+L+EA     ++ ++P   P  WG LL
Sbjct: 655 EGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAP--WGALL 712

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A   +G +++A  A+ + ++   + A+ YV LSN YA  G WE    +RS M+R GI K
Sbjct: 713 GACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRK 772

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+E+ +Q ++F  G+       E+ + L++L +++K  GYV   T LV  + + E
Sbjct: 773 EPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYV-PDTRLVLRNTDQE 831

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E+ +  HSE+LA+ +GL+  P    IR+ KNLR+C DCH   K IS +  R+ V RD 
Sbjct: 832 YKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDA 891

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF++G CSCGD+W
Sbjct: 892 KRFHHFKDGVCSCGDYW 908



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 190/359 (52%), Gaps = 7/359 (1%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  L+ C   +SL     +H+ I++SGF S+      L+N YV+      A+ +FD+M+
Sbjct: 33  YLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMV 92

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E NV+S+T ++ G  + G+ Q A   F +M      PN +T+ +++ A +    L   K+
Sbjct: 93  ERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 152

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H+H    G   +L V ++LV MY K   +D AR VFD M  R++ SWT +I   AQ+ +
Sbjct: 153 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR 212

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACA--SLGRLVSGKVAHGVVVRSGCEFNDVV 267
           G EA  +F +   +    PN     S++NA A  S G L   K  H    ++G   +  V
Sbjct: 213 GQEAFSLFLQME-RGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRV 271

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +AL+ MYAKCGS++ +  VF+ + +  V+++ +MI G A+ G G  +  +F +M   G 
Sbjct: 272 GNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGF 331

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            P+  T++ +L+    +G   E ++ +     + G++ D +  +  V M  R G +D+A
Sbjct: 332 VPDSTTYLSLLNTHVSTGAW-EWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 244/522 (46%), Gaps = 48/522 (9%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++ GY   G  + A+ ++ +M      PNE T+ +++KAC     L  GK+IH HI   G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           FQ ++ V ++LV+MY KC  +D A+ +FD M  RNV+SWT +I   A   +G EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +   +    PN +   S++NA AS G L   K  H   V +G   +  V +ALV MYAK 
Sbjct: 121 QMQREGF-IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GS++ +  VF+ +    + ++T MI G A++G G+ +  LF +M   G  PN  T++ +L
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 339 HAC--SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +A   + +G + E ++ +     K G I D +    ++ M  + G +D+A +L      D
Sbjct: 240 NASAITSTGAL-EWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA-RLVFDGMCD 297

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV----ANAYVTLSNTYALAGEWE 452
            D   + W  ++     +G      EA    ++  Q+     +  Y++L NT+   G WE
Sbjct: 298 RD--VISWNAMIGGLAQNG---CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWE 352

Query: 453 NVHSLRSEMKRTG-----------IHKEPGCSWVE----------IRDQTY--AFYAGNA 489
            V  +       G           +H    C  ++          +R+ T   A   G A
Sbjct: 353 WVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVA 412

Query: 490 LFERGSEVLSLLRELERKMKERGYVGGKTGLVFV---DVEDEAREEIVGLHSERLALAFG 546
             + G E LSL  ++ R+    G+    T  V +   +V +EA E +  +HS   A+  G
Sbjct: 413 QQKCGREALSLFLQMRRE----GFFPDATTFVNILSANVGEEALEWVKEVHS--YAIDAG 466

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           L+ +  G  +  M     C +     ++  D+VER+     V
Sbjct: 467 LVDLRVGNALVHM--YAKCGNTMYAKQVFDDMVERNVTTWTV 506


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/606 (35%), Positives = 336/606 (55%), Gaps = 54/606 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   ++SG + + F  N +++ Y +  K + A ++F  M   +VVS+ +++ GY   G+
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445

Query: 109 PQIALLLFQKM------LGNLVW-----------------------------PNEFTFAT 133
            + AL LF++M      L  + W                             PN  T  +
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVS 505

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYN--------LVVCSSLVDMYGKCNDVDGARRV 185
           ++ AC  +  L+ GK+ H +   F    +        L V + L+DMY KC   + AR++
Sbjct: 506 LLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKM 565

Query: 186 FDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQSRDRPNQHMLASVINACAS 242
           FD +    R+VV+WT +I  +AQ+   + AL++F   F      +PN   L+  + ACA 
Sbjct: 566 FDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACAR 625

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDV---VASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           L  L  G+  H  V+R+   +  V   VA+ L+DMY+K G V+ +  VF+ +   + V++
Sbjct: 626 LAALRFGRQVHAYVLRN--FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSW 683

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           TS++ G   +G G  +L +F+EM    + P+ +TF+ VL+ACSHSG+VD GI   + M +
Sbjct: 684 TSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            +G+ P  +HY C+VD+ GR GRL EA KL   + ++P   P++W  LLSA RLH  V++
Sbjct: 744 DFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPT--PVVWVALLSACRLHSNVEL 801

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
              A+N+L+E       +Y  LSN YA A  W++V  +R  MKRTGI K PGCSW++ R 
Sbjct: 802 GEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRK 861

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
               FY G+    +  ++   L +L +++K  GYV  +T     DV+DE + +++  HSE
Sbjct: 862 GVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYV-PQTSFALHDVDDEEKGDLLFEHSE 920

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LALA+G++++     IRI KNLR+C DCH     IS I+E + ++RD +RFHHF+NGSC
Sbjct: 921 KLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSC 980

Query: 600 SCGDFW 605
           SC  +W
Sbjct: 981 SCKGYW 986



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 216/464 (46%), Gaps = 66/464 (14%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN- 92
           I  L+EC  L     +H + +  G L +  T  +LI  Y+    T  A  L  E L P+ 
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLFHLAT--NLIGTYIASNSTAYAILLL-ERLPPSP 221

Query: 93  --VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQ 149
             V  +  L+   +++G P+    L+++M  +L W P+ +TF  V KAC+ L+ L  G  
Sbjct: 222 SSVFWWNQLIRRALHLGSPRDVFTLYRQM-KSLGWTPDHYTFPFVFKACANLSSLSLGAS 280

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQ 206
           +H  +   GF  N+ VC+++V MYGKC  +  A  +FD +   G +++VSW S++ A+  
Sbjct: 281 LHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMW 340

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
            +  + AL +F +   +    P+   L +++ ACASL   + G+  HG  +RSG   +  
Sbjct: 341 ASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVF 400

Query: 267 VASALVDMYAKCGSVNYSDKVFNRIS---------------------------------- 292
           V +A+VDMYAKCG +  ++KVF R+                                   
Sbjct: 401 VGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEEN 460

Query: 293 -NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG- 350
               VVT+T++I G A+ G G  +LD+F +M   G +PN VT V +L AC   G +  G 
Sbjct: 461 IELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520

Query: 351 ---------IQHLDSMYRKYGIIP---DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
                    I +LD      G  P   D K    ++DM  +    + A K+  S+    D
Sbjct: 521 ETHCYAIKFILNLD------GPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVS-PKD 573

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
              + W  ++     HG  + A++  + + + ++ +     TLS
Sbjct: 574 RDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLS 617



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C  L +L     VH+ +L++ + S   F  N LI+ Y +      A+ +FD M + N
Sbjct: 620 LVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRN 679

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            VS+TSLM GY   G+ + AL +F +M    + P+  TF  V+ ACS    +  G     
Sbjct: 680 AVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFN 739

Query: 153 HI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV-VSWTSIIVA 203
            + + FG        + +VD++G+   +  A ++ + M      V W +++ A
Sbjct: 740 RMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSA 792


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 332/576 (57%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  L  L    SV      +G+  + F  + L++ Y R      A ++F  M 
Sbjct: 111 FTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMP 170

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + V++++++AG+++ GQP  A+ ++++M  + V  +E     VI+AC+   ++  G  
Sbjct: 171 RRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGAS 230

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H H+   G + ++V  +SLVDMY K   +D A RVF LM  RN VSW+++I   AQN Q
Sbjct: 231 VHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQ 290

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL +FR     S  +P+   L S + AC+++G L  G+  HG +VR   +FN ++ +
Sbjct: 291 SDEALRLFRNMQ-ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGT 348

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A +DMY+KCGS+  +  +FN IS+  ++ + +MI     +G G+ +L LF EM   G++P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  +L A SHSGLV+EG      M   + I P  KHY C+VD+L R+G ++EA  L
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S++ +P     +W  LLS    + ++++    ++ ++E           +SN YA   
Sbjct: 469 LTSMKAEPTVA--IWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W+ V  +R  MK +G  K PGCS +EIR   + F   +    +  E++S + +L+ +M+
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY+  +T  V+ D+E+E +E+ +  HSERLA+AFGL++   G  + I+KNLR+C DCH
Sbjct: 587 KMGYI-PRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCH 645

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K IS I +R+ VVRD  RFHHF++G CSC D+W
Sbjct: 646 DAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 193/394 (48%), Gaps = 9/394 (2%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ-LFDEMLEPNVVSYTSLMAGY 103
           +LA +H+ ++ S   S+T  ++ L   Y R      A   L       ++ ++ +++A +
Sbjct: 26  TLARLHALLIVSSSASHTL-ISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAH 84

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
              G P  AL +F + L     P+  TF   + AC+ L DL  G+ +       G++ ++
Sbjct: 85  SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            VCSSL+ +Y +   +  A +VF  M  R+ V+W++++       Q  +A++M+R    +
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR-E 202

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
              + ++ ++  VI AC +   +  G   HG ++R G   + V A++LVDMYAK G ++ 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + +VF  + + + V++++MI G A+ G    +L LF  M + GI+P+    V  L ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            G +  G      + R++    +    T  +DM  + G L  A  L   I    D   +L
Sbjct: 323 IGFLKLGRSVHGFIVRRFDF--NCILGTAAIDMYSKCGSLASAQMLFNMIS---DRDLIL 377

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           W  +++    HGR   A+    ++ E+  +  +A
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHA 411


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 325/600 (54%), Gaps = 37/600 (6%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPNVVSY 96
           C     L  +H+ +LK+G + +++ +   ++C +    +     A+ +FD    P+   +
Sbjct: 53  CSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLW 112

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
             ++ G+    +P+ +LLL+Q+ML      N +TF +++KACS L+ L    QIH  I  
Sbjct: 113 NLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITK 172

Query: 157 FGFQYNLVVCSSLVDMYG-------------------------------KCNDVDGARRV 185
            G++ ++   +SL++ Y                                K   +D A  +
Sbjct: 173 LGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTL 232

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F  M  +N +SWT++I  + Q     EAL++F E    S   P+   LA+ ++ACA LG 
Sbjct: 233 FRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQ-NSDVEPDNVSLANALSACAQLGA 291

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  GK  H  + ++    + V+   L+DMYAKCG +  + +VF  I   SV  +T++I G
Sbjct: 292 LEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISG 351

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G GR ++  F EM   GIKPN +TF  VL ACS++GLV+EG     +M R Y + P
Sbjct: 352 YAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKP 411

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY CVVD+L R G LDEA +  + + + P+   ++WG LL A R+H  +++  E   
Sbjct: 412 TIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNA--VIWGALLKACRIHKNIELGEEIGE 469

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            LI  +      YV  +N +A+  +W+     R  MK  G+ K PGCS + +   T+ F 
Sbjct: 470 ILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 529

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           AG+       ++ S  + + RK++E GYV     ++   V+D+ RE IV  HSE+LA+ +
Sbjct: 530 AGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITY 589

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLI    G TIRIMKNLR+C+DCH V KLIS I +RD V+RD  RFHHFR+G CSCGD+W
Sbjct: 590 GLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 35/261 (13%)

Query: 25  SSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           S+ H    F   L+ C +L +L     +H++I K G+ ++ + +N LIN Y      ++A
Sbjct: 139 SAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLA 198

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN--LVW-------------- 125
             LFD + +P+ VS+ S++ GY   G+  IAL LF+KM+    + W              
Sbjct: 199 HLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHK 258

Query: 126 ---------------PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
                          P+  + A  + AC+ L  L  GK IH+++     + + V+   L+
Sbjct: 259 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLI 318

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           DMY KC D+  A  VF  +  ++V +WT++I  +A +  G EA+  F E       +PN 
Sbjct: 319 DMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMG-IKPNV 377

Query: 231 HMLASVINACASLGRLVSGKV 251
               +V+ AC+  G +  GK+
Sbjct: 378 ITFTTVLTACSYTGLVEEGKL 398


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/582 (36%), Positives = 346/582 (59%), Gaps = 13/582 (2%)

Query: 29  TKAHFIQQLQECKHLISLASV---HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T   F   ++ C  L  LA V     + LKSGF ++   +  L+    + K+   A  LF
Sbjct: 294 THMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLF 353

Query: 86  DEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
             M E  NVVS+T++++G +  G    A+ LF +M    V PN FT++ ++     +   
Sbjct: 354 SLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT----VHYP 409

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           +   ++H  +    ++ +  V ++L+D Y K  +   A +VF+++  +++++W++++  +
Sbjct: 410 VFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGY 469

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS-LGRLVSGKVAHGVVVRSGCEF 263
           AQ  +  EA ++F +   +   +PN+   +SVINACAS       GK  H   ++     
Sbjct: 470 AQTGETEEAAKLFHQL-IKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNN 528

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
              V+SALV MYAK G+++ + +VF R     +V++ SMI G +++G  + +L++F+EM 
Sbjct: 529 ALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQ 588

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            R +  + VTF+GV+ AC+H+GLV++G ++ +SM   + I P  KHY+C++D+  R G L
Sbjct: 589 KRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGML 648

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           ++A  +   +   P  G  +W TLL A+R+H  V++   A+ +LI    + + AYV LSN
Sbjct: 649 EKAMGIINEMPFPP--GATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSN 706

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA AG W+   ++R  M +  + KEPG SW+E++++TY+F AG+      +++ S L E
Sbjct: 707 MYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSE 766

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           L  ++K+ GY    T  VF D+EDE +E I+  HSERLA+AFGLI+ P  I I+I+KNLR
Sbjct: 767 LSIRLKDAGY-QPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLR 825

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH+  KL+S + +R  VVRD NRFHHF++G CSCGD+W
Sbjct: 826 VCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 191/382 (50%), Gaps = 10/382 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH + +K G + +      L++ Y++ +     R++FDEM E NVVS+TSL+AGY   G 
Sbjct: 115 VHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGL 174

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
                 LF +M    V PN +T +TVI A      +  G Q+H  +   GF+  + V +S
Sbjct: 175 YGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNS 234

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +Y +   +  AR VFD M  R+ V+W S+I  + +N Q  E  E+F +       +P
Sbjct: 235 LISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV-KP 293

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
                ASVI +CASL  L   K+     ++SG   + +V +AL+   +KC  ++ +  +F
Sbjct: 294 THMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLF 353

Query: 289 NRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           + +    +VV++T+MI G  + G    +++LF++M   G+KPN  T+  +L       + 
Sbjct: 354 SLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVS 413

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +   + + + Y +   +      T ++D   + G   +A K+ + I+       + W  +
Sbjct: 414 EMHAEVIKTNYERSSSVG-----TALLDAYVKLGNTIDAVKVFEIIEAK---DLMAWSAM 465

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           L+     G  + A +  +QLI+
Sbjct: 466 LAGYAQTGETEEAAKLFHQLIK 487



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 180/353 (50%), Gaps = 10/353 (2%)

Query: 79  QVARQLFDEML-EPNVV-SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
            +A  LFD++   P  +  +  L+  Y    Q + AL LF  +L + + P+E T + V  
Sbjct: 42  HIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFN 101

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
            C+   D   G+Q+H     FG   ++ V +SLVDMY K  +V+  RRVFD MG RNVVS
Sbjct: 102 ICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WTS++  ++ N       E+F +  Y+    PN++ +++VI A  + G +  G   H +V
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGV-LPNRYTVSTVIAALVNEGVVGIGLQVHAMV 220

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           V+ G E    V ++L+ +Y++ G +  +  VF+++     VT+ SMI G  + G      
Sbjct: 221 VKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVF 280

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG-IQHLDSMYRKYGIIPDAKHYTCVVD 375
           ++FN+M   G+KP  +TF  V+ +C  + L +   ++ +     K G   D    T ++ 
Sbjct: 281 EIFNKMQLAGVKPTHMTFASVIKSC--ASLRELALVKLMQCKALKSGFTTDQIVITALMV 338

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLL-WGTLLSASRLHGRVDIAVEASNQL 427
            L +   +D+A  L   ++   +G  ++ W  ++S    +G  D AV   +Q+
Sbjct: 339 ALSKCKEMDDALSLFSLME---EGKNVVSWTAMISGCLQNGGNDQAVNLFSQM 388


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 353/671 (52%), Gaps = 77/671 (11%)

Query: 9   LIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKH--LISLASVHSEILKSGFL------S 60
           L+     ++   Q KR   H + H  Q      H  L+ L +   ++  +  L       
Sbjct: 28  LVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKR 87

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F+ N L++ Y +    Q  +  FD M   + VSY + +AG+     PQ +L LF++M 
Sbjct: 88  DIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                P E+T  +++ A + L+DL  GKQIH  I    F  N+ + ++L DMY KC +++
Sbjct: 148 REGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQ--------------GH--------------- 211
            AR +FD +  +N+VSW  +I  +A+N Q              GH               
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYC 267

Query: 212 ------EALEMFREF-----------------NYQSRD-------------RPNQHMLAS 235
                 EA  +F EF                 N +  D              P+ + L+S
Sbjct: 268 QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+++CA L  L  G+  HG  + +G   N +V+SAL+DMY+KCG ++ +  VFN +   +
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           VV++ +MIVG A+ G  + +L+LF  M+ +  KP++VTF+G+L AC H   +++G ++ D
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           S+  ++G+ P   HY C+V++LGRTGR+++A  L K++  DPD   L+W TLLS     G
Sbjct: 448 SITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF--LIWSTLLSICSTKG 505

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            +  A  A+  L E +  +A  Y+ LSN YA  G W++V S+R+ MK   + K  G SW+
Sbjct: 506 DIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWI 565

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           EI ++ + F + +       ++   L  L  K++E G+    T LV  DV ++ + + + 
Sbjct: 566 EIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPN-TNLVLHDVGEDEKFKSIC 624

Query: 536 LHSERLALAFGLISIPKGIT-IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
            HSE+LALAFGLI  P GI+ IRI+KN+R+C DCH+  K  S I+ R  ++RD NRFHHF
Sbjct: 625 FHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHF 684

Query: 595 RNGSCSCGDFW 605
             G CSC D W
Sbjct: 685 STGKCSCNDNW 695


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 318/558 (56%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I + G  S+    N LI+ Y R      AR+LF  M + +++S+ +++AGY     
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ L+++M    V P   TF  ++ AC+  +    GK IH  I   G + N  + ++
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY +C  +  A+ VF+    R+V+SW S+I  HAQ+     A ++F+E   +  + P
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE-P 530

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +    ASV++ C +   L  GK  HG +  SG + +  + +AL++MY +CGS+  +  VF
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLV 347
           + + +  V+++T+MI G A  G    +++LF +M + G +P D  TF  +L AC+H+GLV
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLV 650

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            EG Q   SM  +YG++P  +HY C+V +LGR  R  EA  L   +   PD    +W TL
Sbjct: 651 LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAA--VWETL 708

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+HG + +A  A+N  ++ N +    Y+ LSN YA AG W++V  +R  M+  GI 
Sbjct: 709 LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 768

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG SW+E+ +  + F A +      +E+ + L+ L  +M+E GY    T  V  D+  
Sbjct: 769 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFP-DTQHVLHDLGK 827

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
             +E  +  HSERLA+A+GLI  P G  IRI KNLR+C DCH   K IS +V R+ + RD
Sbjct: 828 AHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARD 887

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFH F+NG CSC D+W
Sbjct: 888 SNRFHSFKNGKCSCEDYW 905



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 208/390 (53%), Gaps = 8/390 (2%)

Query: 24  RSSCHTKAHFIQQLQEC--KHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           R +   +A ++  LQ C  K L+  A  +H++++++G   + F  N LIN YV+ +    
Sbjct: 21  RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD 80

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A Q+F EM   +V+S+ SL++ Y   G  + A  LF++M      PN+ T+ +++ AC  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
            A+L  GK+IH+ I   G+Q +  V +SL+ MYGKC D+  AR+VF  +  R+VVS+ ++
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +  +AQ A   E L +F + + +    P++    ++++A  +   L  GK  H + V  G
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGIS-PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
              +  V +ALV M  +CG V+ + + F  I++  VV Y ++I   A++G    + + + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M S G+  N  T++ +L+ACS S  ++ G + + S   + G   D +    ++ M  R 
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           G L +A +L  ++   P    + W  +++ 
Sbjct: 379 GDLPKARELFYTM---PKRDLISWNAIIAG 405



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 178/346 (51%), Gaps = 2/346 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   ++ G  S+      L+   VR      A+Q F  + + +VV Y +L+A     G 
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGH 310

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A   + +M  + V  N  T+ +++ ACS    L  GK IH+HI   G   ++ + ++
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNA 370

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY +C D+  AR +F  M  R+++SW +II  +A+     EA+ ++++   +   +P
Sbjct: 371 LISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV-KP 429

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +     +++ACA+      GK+ H  ++RSG + N  +A+AL++MY +CGS+  +  VF
Sbjct: 430 GRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                  V+++ SMI G A++G    +  LF EM +  ++P+++TF  VL  C +   ++
Sbjct: 490 EGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALE 549

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            G Q +     + G+  D      +++M  R G L +A  +  S+Q
Sbjct: 550 LGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L  C +  + A    +H +IL+SG  SN    N L+N Y R      A+ +F+   
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +V+S+ S++AG+   G  + A  LFQ+M    + P+  TFA+V+  C     L  GKQ
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  I   G Q ++ + ++L++MY +C  +  AR VF  +  R+V+SWT++I   A   +
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             +A+E+F +   +    P+     S+++AC   G ++ G
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEG 653


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 326/572 (56%), Gaps = 35/572 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  + N L++ YV+  K   AR+LFD M   +VVS+  +++GY   G    A  LF    
Sbjct: 192 DAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 121 GNLVWPNEFTFATVIKACS-------------------------MLADLITGKQIHTHIE 155
              V    FT+  V+   +                         M+A  I  + +    E
Sbjct: 252 VRDV----FTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 156 TFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
            F      N+   ++++  Y +   ++ A+ VFD M  ++ VSW +++ A++Q     E 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++F E   +  +  N+   A V++ CA +  L  G   HG ++R+G      V +AL+ 
Sbjct: 368 LQLFIEMG-RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCG++  +   F  +    VV++ +MI G A++G G+ +L++F+ M +   KP+D+T
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            VGVL ACSHSGLV++GI +  SM+  +G+    +HYTC++D+LGR GRL EA+ L K +
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
             +PD    +WG LL ASR+H   ++   A+ ++ E   + A  YV LSN YA +G+W +
Sbjct: 547 PFEPDS--TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRD 604

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  M+  G+ K PG SW+E++++ + F AG+ +     ++ + L +L+ +MK+ GY
Sbjct: 605 ARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGY 664

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T +V  DVE+E +E ++  HSE+LA+A+G+++IP G  IR++KNLR+C DCH+ FK
Sbjct: 665 VSA-TDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS I  R  ++RD NRFHHFR GSCSCGD+W
Sbjct: 724 YISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 32/355 (9%)

Query: 15  ASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR 74
           A+SL R   R   ++    +  L     L     +  E+     + ++ T N +I+ +  
Sbjct: 88  AASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP----VRDSVTYNVMISSHAN 143

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
                +AR  FD   E + VS+  ++A Y+  G+ + A  LF          N  T    
Sbjct: 144 HGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----------NSRTEWDA 193

Query: 135 IKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           I   ++++  +   ++    E F      ++V  + +V  Y +  D+  ARR+FD    R
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV---SG 249
           +V +WT+++  +AQN    EA  +F          P ++ ++      A + R +   + 
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAM-------PERNAVSWNAMVAAYIQRRMMDEAK 306

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           ++ + +  R+   +N ++       YA+ G +  +  VF+ +     V++ +M+   ++ 
Sbjct: 307 ELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQG 361

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK-YGI 363
           G    +L LF EM   G   N   F  VL  C+    ++ G+Q    + R  YG+
Sbjct: 362 GCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 165/401 (41%), Gaps = 65/401 (16%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N  I  ++R  +   A +LF  M   +  +Y +++AGY   G+  +A  LF+     +  
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA----IPR 97

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+ +++ T++ A ++ + L   + +   +       YN+++ S     +     V  AR 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARH 152

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
            FDL   ++ VSW  ++ A+ +N +  EA  +F                           
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF--------------------------- 185

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
                         S  E++ +  +AL+  Y + G ++ + ++F+R+    VV++  M+ 
Sbjct: 186 -------------NSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVS 232

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A+ G    +  LF+    R +     T+  V+   + +G+++E  +  D+M  +    
Sbjct: 233 GYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMPER---- 284

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +A  +  +V    +   +DEA +L     + P      W T+L+     G ++   EA 
Sbjct: 285 -NAVSWNAMVAAYIQRRMMDEAKEL---FNMMPCRNVASWNTMLTGYAQAGMLE---EAK 337

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
                  Q+ A ++  +   Y+  G  E    L  EM R G
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C  + +L     +H  ++++G+    F  N L+  Y +    + AR  F
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAF 441

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +EM E +VVS+ +++AGY   G  + AL +F  M      P++ T   V+ ACS
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/491 (39%), Positives = 302/491 (61%), Gaps = 8/491 (1%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML     PN+FT+  V+KAC+ + +L  GK +H  +  FGF   + V ++LV MY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 179 VDG----ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
            +G    AR+VFD M   + VSW+++I  + +  +  +A+ +FRE   +    P++  + 
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGV-CPDEITMV 119

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           SV++AC  LG L  GK     V +   + N  +++AL+DM+AKCG V+ +  +F  +   
Sbjct: 120 SVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER 179

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           ++V++TS+I G A +G G  ++ +F EM+  G+ P+DV F+G+L ACSHSGLVD+G ++ 
Sbjct: 180 NIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYF 239

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
           DSM + + I+P  +HY C+VDML R G + EA K  + + +DP+  P++W TL++A R H
Sbjct: 240 DSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPN--PVVWRTLINACRAH 297

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G + +  + + QLI +     + YV LSN YA   +WE    +R  M   G+ K PG + 
Sbjct: 298 GELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTM 357

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           +E+ ++ Y F AG+    +  E+  ++ E+ ++MK  GY+   T  V +D++DE +E+ +
Sbjct: 358 IELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTE-VLLDIDDEDKEDTL 416

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSE+LA+AF L++ P G  IRI+KNLR+C DCH   K IS I  R+ VVRD NRFHHF
Sbjct: 417 NRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHF 476

Query: 595 RNGSCSCGDFW 605
           +NG CSC DFW
Sbjct: 477 KNGLCSCRDFW 487


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/639 (34%), Positives = 339/639 (53%), Gaps = 74/639 (11%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C       ++H+  + SG   + F  + L++ Y+RL  T  AR +FD M E NVV +
Sbjct: 27  LKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGW 86

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK-------------------- 136
           ++L+AGY   G  + A  L ++M    V PN  T+  ++                     
Sbjct: 87  SALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHS 146

Query: 137 ----------ACSMLA-----DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
                     +C++ A     ++  GKQ+H ++   G + +  V ++L+DMYGKC   D 
Sbjct: 147 EGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADE 206

Query: 182 ARRVF------DLMGCR-----------------------------NVVSWTSIIVAHAQ 206
             RVF      D+  C                              NVVSWTSI+    Q
Sbjct: 207 IVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQ 266

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N +  EA+++FR       + PN   +  V+ A A++  L+ G+ AH   +R G   +  
Sbjct: 267 NGRDLEAVDLFRTMQSIGVE-PNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVY 325

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V SALVDMYAKCG   ++  +F+ + + +VV++ +MI G A +G    ++ LF  M    
Sbjct: 326 VGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCK 385

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            KP+ VTF  VL ACS +GL +EG ++ + M + +GI P  +HY C+V +LGR+G+LDEA
Sbjct: 386 QKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEA 445

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y L   +  +PD    +WG+LL + R++G V +A  A+ +L +     A  YV LSN YA
Sbjct: 446 YDLINEMPFEPDS--CIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYA 503

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
               W+ V+ +R EMK  G+ KE GCSW+EI+++ +   AG+      + +   L +L  
Sbjct: 504 SKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTI 563

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +M   G+   +   V  DVE++ ++ I+ +HSE+LA+A GLIS   G  +R++KNLR+C 
Sbjct: 564 EMNRLGFAPSRD-FVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICG 622

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH+  K IS   +R+  VRD NRFHHF++G CSCGD+W
Sbjct: 623 DCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/620 (34%), Positives = 334/620 (53%), Gaps = 37/620 (5%)

Query: 19  TRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78
           T  ++ SS    A  +  LQ C ++  L  +H ++LK+G + +    + L+         
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 79  QVA--RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
            +A  R +FD +  PN   + +++ GY N  +P+ ALLL+  ML + V  N +TF  ++K
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 137 ACSMLADLITGKQIHTHIETFGF-------------------------------QYNLVV 165
           ACS ++     +QIH HI   GF                               Q + V 
Sbjct: 127 ACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S++D Y KC +++ A  +F+ M  RN++SWTS+I       +  EAL +F        
Sbjct: 187 WNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI 246

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              N   L S + ACA LG L  GK  H  + +   E + ++   L+DMYAKCG +  + 
Sbjct: 247 KLDNV-ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAI 305

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF ++    V  +T+MI G A +G GR +L+ F +M + G++PN +TF G+L ACSH+G
Sbjct: 306 EVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAG 365

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LV E     +SM R +G  P  +HY C+VD+LGR G L EA +L +++ V P+    +WG
Sbjct: 366 LVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAA--IWG 423

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL+A  +HG +++  +    LI+ +      Y+ L++ +A AGEW     +R +MK  G
Sbjct: 424 ALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQG 483

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K PGCS + +    + F AG+    +  E+  +L ++  +++E GY      L+    
Sbjct: 484 VSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLE 543

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           + E    I   HSE+LA+ FGLIS   G+TIRI+KNLR+C DCH V KLIS +  R+ ++
Sbjct: 544 DKEKETAI-HHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILM 602

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD  RFH F++G+C+CGD+W
Sbjct: 603 RDRTRFHLFKDGNCTCGDYW 622


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 341/625 (54%), Gaps = 39/625 (6%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           L +SS +   ++    T       L  C  L     +H+  +++G   +      L   Y
Sbjct: 18  LPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAY 77

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
               +  +   L     +P  V YTS +  + + G    AL L  +MLG  + P   T +
Sbjct: 78  AASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLS 137

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA---------- 182
           + + AC  LA    G+ +H +        +  V ++L+ MY +  D D A          
Sbjct: 138 SSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDP 194

Query: 183 ---------------------RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
                                R +FD M  ++ + W ++I  + Q+ + +EAL +FR + 
Sbjct: 195 HVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR-WM 253

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGS 280
            +S   P++  +   ++A A LG   SG+  H  V  S   + N  V +AL+DMY KCGS
Sbjct: 254 LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGS 313

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  +  VFN I +  +V + +MI G A +G  R +L++F+++ S+G+ P D+TF+G+L+A
Sbjct: 314 LEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNA 373

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSHSGLVDEG Q   SM  +Y I+P  +HY C+VD+LGR G ++EA+ L +S+ + PD  
Sbjct: 374 CSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPD-- 431

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            ++W +LL+A RLH  + +  + ++ L+      +  Y+ LSN YA  G WE V  +RS 
Sbjct: 432 TVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSM 491

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           MK +GI KEPGCS +E+  + Y F AG+    R  E+ ++L ++   +KE+G+V  +T L
Sbjct: 492 MKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHV-PQTEL 550

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  D+++  +E+ + +HSE+LA+AFGLIS   G TI+I+KNLR C DCH V KLIS I  
Sbjct: 551 VLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITG 610

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  V RD NRFHHF +GSC+CGD+W
Sbjct: 611 RKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 341/625 (54%), Gaps = 39/625 (6%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           L +SS +   ++    T       L  C  L     +H+  +++G   +      L   Y
Sbjct: 17  LPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAY 76

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
               +  +   L     +P  V YTS +  + + G    AL L  +MLG  + P   T +
Sbjct: 77  AASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLS 136

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA---------- 182
           + + AC  LA    G+ +H +        +  V ++L+ MY +  D D A          
Sbjct: 137 SSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDP 193

Query: 183 ---------------------RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
                                R +FD M  ++ + W ++I  + Q+ + +EAL +FR + 
Sbjct: 194 HVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR-WM 252

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGS 280
            +S   P++  +   ++A A LG   SG+  H  V  S   + N  V +AL+DMY KCGS
Sbjct: 253 LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGS 312

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +  +  VFN I +  +V + +MI G A +G  R +L++F+++ S+G+ P D+TF+G+L+A
Sbjct: 313 LEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNA 372

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSHSGLVDEG Q   SM  +Y I+P  +HY C+VD+LGR G ++EA+ L +S+ + PD  
Sbjct: 373 CSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPD-- 430

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            ++W +LL+A RLH  + +  + ++ L+      +  Y+ LSN YA  G WE V  +RS 
Sbjct: 431 TVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSM 490

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           MK +GI KEPGCS +E+  + Y F AG+    R  E+ ++L ++   +KE+G+V  +T L
Sbjct: 491 MKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHV-PQTEL 549

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  D+++  +E+ + +HSE+LA+AFGLIS   G TI+I+KNLR C DCH V KLIS I  
Sbjct: 550 VLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITG 609

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  V RD NRFHHF +GSC+CGD+W
Sbjct: 610 RKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 331/607 (54%), Gaps = 42/607 (6%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  L     VH+ +LK   L+ N+F  + L++ Y   ++   AR++FD +
Sbjct: 263 FASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMV 322

Query: 89  LE--PNVVSYTSLMAGYINMG-QPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADL 144
            E    +  + +++ GY   G   + A+ LF +M       P+E T A V+ AC+  +++
Sbjct: 323 PEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACAR-SEV 381

Query: 145 ITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
            TGK+ +H ++       N  V ++L+DMY +   +D A  +F ++  R++VSW ++I  
Sbjct: 382 FTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITG 441

Query: 204 HAQNAQGHEALEMFREFNYQS-------------------RDRPNQHMLASVINACASLG 244
                   EA ++ RE    S                   R  PN   L +++  CA L 
Sbjct: 442 CIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLA 501

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
               GK  HG  VR   E +  V SALVDMYAKCG +  +  VF+R+   +V+T+  +I+
Sbjct: 502 APARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIM 561

Query: 305 GAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
               +GLG  +L LF+ M++ G   PN+VTF+  L ACSHSGLVD G++    M R YG 
Sbjct: 562 AYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGF 621

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-----QVDPDGGPLLWGTLLSASRLHGRVD 418
            P    + CVVD+LGR GRLDEAY +  S+     QV        W T+L A RLH  V 
Sbjct: 622 EPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSA------WSTMLGACRLHRNVK 675

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +   A+ +L E     A+ YV L N Y+ AG WEN   +R  M++ G+ KEPGCSW+E+ 
Sbjct: 676 LGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELD 735

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
              + F AG +     ++V + +  L  +M+  GYV   T  V  DV++  +  ++  HS
Sbjct: 736 GAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVP-DTSCVLHDVDEAEKAAMLRYHS 794

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFGL+  P G TIR+ KNLR+C DCH+  K IS +V R+ V+RDV RFHHFR+G+
Sbjct: 795 EKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGT 854

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 855 CSCGDYW 861



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 195/438 (44%), Gaps = 38/438 (8%)

Query: 33  FIQQLQECKHLISLA-----SVHSEILKSGFLSN---TFTLNHLINCYVRLKKTQVARQL 84
            +  L  C HL           H+  LK GFL      F  N L++ Y RL     A++L
Sbjct: 155 LVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRL 214

Query: 85  F--DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
           F        ++V++ ++++  +  G+ + A+ +   M+   V P+  TFA+ + ACS L 
Sbjct: 215 FFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLE 274

Query: 143 DLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTS 199
            L  G+++H  + +      N  V S+LVDMY     V  ARRVFD++    R +  W +
Sbjct: 275 LLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNA 334

Query: 200 IIVAHAQN-AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           +I  +AQ+     EA+E+F     ++   P++  +A V+ ACA        +  HG VV+
Sbjct: 335 MICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVK 394

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
                N  V +AL+DMYA+ G ++ +  +F  I    +V++ ++I G    GL   +  L
Sbjct: 395 RDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQL 454

Query: 319 FNEMI--------------------SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
             EM                      +   PN++T + +L  C+       G + +    
Sbjct: 455 VREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARG-KEIHGYA 513

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            ++ +  D    + +VDM  + G L  A  +   +   P    + W  L+ A  +HG  D
Sbjct: 514 VRHALESDLAVGSALVDMYAKCGCLALARAVFDRL---PRRNVITWNVLIMAYGMHGLGD 570

Query: 419 IAVEASNQLIESNQQVAN 436
            A+   ++++ + +   N
Sbjct: 571 EALALFDRMVANGEATPN 588



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 139/309 (44%), Gaps = 26/309 (8%)

Query: 127 NEFTFATVIKACSMLADLITGKQIH--THIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           + F     IK+ + L D  + + IH  +       +    V ++L+  Y +C D+D A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 185 VFDLMG--CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +F       R+ VS+ S+I A     +   AL+  R+    +    +   L SV+ AC+ 
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDM--LADHEVSSFTLVSVLLACSH 164

Query: 243 LG----RLVSGKVAHGVVVRSGCEFND-----VVASALVDMYAKCGSVNYSDKVF--NRI 291
           L     RL  G+ AH   ++ G  F D        +AL+ MYA+ G V+ + ++F  +  
Sbjct: 165 LADQGHRL--GREAHAFALKHG--FLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGA 220

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
               +VT+ +MI    + G    ++ +  +M++ G++P+ VTF   L ACS   L+  G 
Sbjct: 221 GVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGR 280

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL--WGTLLS 409
           +    + +   +  ++   + +VDM     ++  A ++   +   P+ G  L  W  ++ 
Sbjct: 281 EVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMV---PEHGRQLGMWNAMIC 337

Query: 410 ASRLHGRVD 418
               HG +D
Sbjct: 338 GYAQHGGMD 346


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/513 (39%), Positives = 314/513 (61%), Gaps = 12/513 (2%)

Query: 96  YTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           + +++ GY     P+ A++L+  M+   +  PN FTF  ++ +C+ L+ L  G ++H+HI
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              GF+ +L V ++L+ +Y    +++ AR +FD    R++VS+ ++I  +A+  Q   AL
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVD 273
            +F E   Q+ D      L +V++ACA LG    GK  +   + +G    N ++ +A++D
Sbjct: 122 CLFGEM--QNSDEVT---LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176

Query: 274 MYAKCGSVNYSDKVFNRISN--PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           MYAKCGS++ + ++F R+     +   + SMI G A++GLG  ++ +F E+IS G+KP++
Sbjct: 177 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 236

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTFVGVL AC HSGL++EG +  +SM+  YGI P  +HY C+VD+LGR G L+EAY L +
Sbjct: 237 VTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQ 296

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            +  + +   ++W  LLSA R HG V I   A  +L+E   Q    YV LSN  A A +W
Sbjct: 297 KMPFEANS--VIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQW 354

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           E    +R  M+  GI K PG S++E+    + F A +    +G E+  +L+++  ++K  
Sbjct: 355 EEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSA 414

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V  D+++E +E +V  HSE+LALAFGL+      TIRI+KNLR+C DCH  
Sbjct: 415 GYVP-NTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKA 473

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FKL+S+I  R+  VRD  RFHHFRNGSCSC DF
Sbjct: 474 FKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 172/393 (43%), Gaps = 64/393 (16%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L SL     VHS I+K GF S+ F  N LI+ Y       +AR LFDE L  ++
Sbjct: 42  LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDL 101

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI-HT 152
           VSY +++ GY  + QP+ AL LF +M  +    +E T   V+ AC+ L     GK++ H 
Sbjct: 102 VSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQ 157

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS---WTSIIVAHAQNAQ 209
           +IE   F  N ++ ++++DMY KC  +D A  +F  +G +N+ +   + S+I   AQ+  
Sbjct: 158 YIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG-KNMKTGFVFNSMIAGLAQHGL 216

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G  A+ +FRE    +  +P++     V+ AC   G +  GK                   
Sbjct: 217 GETAITVFREL-ISTGLKPDEVTFVGVLCACGHSGLIEEGK------------------- 256

Query: 270 ALVDMYAKCGSVNYSDKVFNRISN-----PSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
                           K+F  + N     P +  Y  M+    +YG    + DL  +M  
Sbjct: 257 ----------------KLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM-- 298

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
              + N V +  +L AC   G V  G    Q L  M  ++G       Y  + ++L    
Sbjct: 299 -PFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHG-----ARYVLLSNILADAN 352

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
           + +EA ++ K ++      P  W  +     +H
Sbjct: 353 QWEEARQVRKVMEDHGIRKPPGWSYIELGGAIH 385


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 329/555 (59%), Gaps = 6/555 (1%)

Query: 53  ILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           ++ SG + S+   +N  +N +        AR+LF++M++ +VV++  ++  Y+       
Sbjct: 231 LVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGE 290

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           A+ LF ++  + V  N+ TF  ++   + L  L  GK IH  ++  G+  + VV ++L+ 
Sbjct: 291 AVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMS 350

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           +YG+C     A ++F  MG ++V++WT + VA+AQN    EAL++F+E   + R RP   
Sbjct: 351 LYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR-RPTSA 409

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L +V++ CA L  L  G+  H  ++ +      VV +AL++MY KCG +  +  VF ++
Sbjct: 410 TLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKM 469

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
           +   ++ + SM+   A++G    +L LFN+M   G+K + V+FV VL A SHSG V +G 
Sbjct: 470 AKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGY 529

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSA 410
           Q+  +M + + I P  + Y CVVD+LGR GR+ EA  +   +    PDG  +LW TLL A
Sbjct: 530 QYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDG--ILWMTLLGA 587

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
            R H + D A  A+ Q++E +   + AYV LSN YA AG+W+ V+ +R  M+  G+ KEP
Sbjct: 588 CRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEP 647

Query: 471 GCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAR 530
           G S +EI ++ + F  G+    R   + + L  L  +M+  GY+   T ++  DVEDE +
Sbjct: 648 GRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI-PDTKMILHDVEDERK 706

Query: 531 EEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNR 590
           E+++  HSERLA+AFGLIS P G  +R++KNLR+C DCH   K IS +  R+ +VRD +R
Sbjct: 707 EDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHR 766

Query: 591 FHHFRNGSCSCGDFW 605
           FH+F++G CSC D+W
Sbjct: 767 FHNFKDGRCSCKDYW 781



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 174/363 (47%), Gaps = 7/363 (1%)

Query: 31  AHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           A F+  LQ C   K++     VH  +   GF  N     HLI  Y +      A+Q+F+ 
Sbjct: 5   AFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEI 64

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +   +V ++T ++  Y   G    AL +F +M    V P + T+  ++ AC+    L  G
Sbjct: 65  LERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDG 124

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            +IH  I   GF+ ++ V ++L++MY KC  V GA   F  +  R+VVSWT++I A  Q+
Sbjct: 125 MEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQH 184

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            Q   A  ++R         PN+  L +V NA      L  GK  +G+V     E +  V
Sbjct: 185 DQFALARWLYRRMQLDGV-VPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRV 243

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            ++ V+M+   G +  + ++F  + +  VVT+  +I    +      ++ LF  +   G+
Sbjct: 244 MNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGV 303

Query: 328 KPNDVTFVGVLHA-CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           K ND+TFV +L+   S + L    + H   + ++ G   DA   T ++ + GR     +A
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIH--ELVKEAGYDRDAVVATALMSLYGRCEAPGQA 361

Query: 387 YKL 389
           +K+
Sbjct: 362 WKI 364



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+   F  +++ CS   ++  G+++H H+   GF+ N +VC  L+ MY +C  V  A++V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLG 244
           F+++  ++V +WT +I  + Q      AL MF  +  Q  D  P +    +++NACAS  
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMF--YQMQEEDVMPTKVTYVAILNACASTE 119

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G   HG +++ G E +  V +AL++MY KCGSV  +   F R+ +  VV++T+MI 
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
              ++     +  L+  M   G+ PN +T   V +A      + EG + +  +     + 
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVME 238

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS----------ASRLH 414
            D +     V+M G  G L +A +L + + VD D   + W  +++          A RL 
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRD--VVTWNIVITLYVQNENFGEAVRLF 295

Query: 415 GRV 417
           GR+
Sbjct: 296 GRL 298



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 1/168 (0%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+     +++  C+S   +  G+  H  V   G E N++V   L+ MYA+CGSV  + +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF  +    V  +T MI    + G    +L +F +M    + P  VT+V +L+AC+ +  
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           + +G++ +     + G   D    T +++M  + G +  A+   K ++
Sbjct: 121 LKDGME-IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 167



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 9/200 (4%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T A  +  L  C HL +L     +HS I+++ F         LIN Y +  K   A  +F
Sbjct: 407 TSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVF 466

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           ++M + +++ + S++  Y   G     L LF +M  + V  +  +F +V+ A S    + 
Sbjct: 467 EKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVT 526

Query: 146 TGKQIH-THIETFGFQYNLVVCSSLVDMYGKCNDVDGARR-VFDLMGC-RNVVSWTSIIV 202
            G Q     ++ F       +   +VD+ G+   +  A   V  L GC  + + W +++ 
Sbjct: 527 DGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLG 586

Query: 203 A---HAQNAQGHEALEMFRE 219
           A   H +  Q   A E   E
Sbjct: 587 ACRTHNKTDQAKAAAEQVLE 606


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 330/557 (59%), Gaps = 11/557 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++KSGF  +++ ++ LI+ Y   K    A+QLF+     +VVS+ +++ GY+   +
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 276

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A ++F +M+   V     ++ T+I   +++  +   K++   +     + NLV  +S
Sbjct: 277 MGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEMP----ERNLVSWNS 328

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++  + KC +V+ A  +F  M CR+VVSW S++  +AQ  + +EAL +F +       +P
Sbjct: 329 MLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV-KP 387

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +  + S+++ACA LG L  G   H  +  +  E N +V +ALVDMYAKCG ++ + +VF
Sbjct: 388 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 447

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N + +  V+ + ++I G A +G  + +  LF EM   G++PND+TFV +L ACSH+G+VD
Sbjct: 448 NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVD 507

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + LD M   YGI P  +HY CV+D+L R G L+EA +L  ++ ++P+  P   G LL
Sbjct: 508 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPN--PSALGALL 565

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              R+HG  ++      +LI      +  Y+ LSN YA A +W++   +R+ MK  GI K
Sbjct: 566 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 625

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG S +E++   + F AG+      +++   L E+  ++K        TG V +D+E+E
Sbjct: 626 VPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEE 685

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  + +HSE+LA+A+GL+ +     IRI+KNLR+CRDCH V KLIS +  R+ +VRD 
Sbjct: 686 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDR 745

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF +G CSC DFW
Sbjct: 746 NRFHHFEDGECSCLDFW 762



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 206/419 (49%), Gaps = 19/419 (4%)

Query: 16  SSLTR-QNKRSSCHTKAHFIQQLQECKHLISLASVHSEIL---KSGFLSNTFTLNHLINC 71
           SS++R  N  ++  +    +     CK L  L  VH++I+    S F  +       ++ 
Sbjct: 81  SSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSP 140

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           +        A+ +F  +  P    Y SL+    +   P  AL L+  ML + + P+  T+
Sbjct: 141 FPTF--LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTY 198

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
             VIKAC+  +    G  +HTH+   GF+ +  + SSL+ +Y    D+  A+++F+L   
Sbjct: 199 PFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSA 258

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+VVSW ++I  + ++ +   A  +F       RD  + +   ++IN  A +G++   K 
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRM--VCRDVISWN---TMINGYAIVGKIDEAK- 312

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
               +     E N V  ++++  + KCG+V  +  +F+ +    VV++ SM+   A+ G 
Sbjct: 313 ---RLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGK 369

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
              +L LF++M + G+KP + T V +L AC+H G +D+G+ HL +      I  ++   T
Sbjct: 370 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGT 428

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            +VDM  + G++  A ++  +++       L W T+++   +HG V  A +   ++ E+
Sbjct: 429 ALVDMYAKCGKISLATQVFNAME---SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEA 484


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 336/590 (56%), Gaps = 26/590 (4%)

Query: 33  FIQQLQECKHLISLASVHSEILKSG--------FLSNTFTLNHLINCYVRLKKTQV---- 80
            +  L  C  L +LA +H+  +K+G        F++   TL     C  +  +       
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTL-----CTEQGAEAPAHLAY 85

Query: 81  ARQLFDEMLEP-NVVSYTSLMAGYINMGQ----PQIALLLFQKMLGNLVWPNEFTFATVI 135
           ARQ+FD +  P +VV Y +L+ GY   G      + A  +F +M+   V P+ +TF +++
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           KAC+       G+Q H      G   +  V  +L++MY +C DV  AR +FD M    VV
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           S+ ++I A  +++   EAL +FRE   +   +P    L SV++ACA LG L  G+  H  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGL-KPTSVTLISVLSACALLGALELGRWIHDY 264

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           + +   +    V +AL+DMYAKCGS+  +  VF  + +     ++ M+V  A +G GR +
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREA 324

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           + +F EM  +G+KP+DVTF+GVL+ACSHSG+V EG+Q+ DSM R+YGI+   KHY CV D
Sbjct: 325 ISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTD 383

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +L R+G+L+ AYK    + + P    +LW TLLSA   HG VD+      +++E +    
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTA--ILWRTLLSACAGHGDVDMGKRVFERILELDDSHG 441

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV  SN  A  G WE ++ +R  M   G+ K PGCS +EI +  + F+AG+       
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E   ++ E+  ++K  GYV   + +  V++ +E +   +  HSE+LA++FGL++   G T
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +RI+KNLR+C DCH + KL+S +  R  ++RD+NRFHHF +G CSCGD+W
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 352/671 (52%), Gaps = 77/671 (11%)

Query: 9   LIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKH--LISLASVHSEILKSGFL------S 60
           L+     ++   Q KR   H + H  Q      H  L+ L +   ++  +  L       
Sbjct: 28  LVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKR 87

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F+ N L++ Y +    Q  +  FD M   + VSY + +AG+     PQ +L LF++M 
Sbjct: 88  DXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                P E+T  +++ A + L DL  GKQIH  I    F  N+ + ++L DMY KC +++
Sbjct: 148 REGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQ--------------GH--------------- 211
            AR +FD +  +N+VSW  +I  +A+N Q              GH               
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYC 267

Query: 212 ------EALEMFREF-----------------NYQSRD-------------RPNQHMLAS 235
                 EA  +F EF                 N +  D              P+ + L+S
Sbjct: 268 QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+++CA L  L  G+  HG  + +G   N +V+SAL+DMY+KCG ++ +  VFN +   +
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           VV++ +MIVG A+ G  + +L+LF  M+ +  KP++VTF+G+L AC H   +++G ++ D
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           S+  ++G+ P   HY C+V++LGRTGR+++A  L K++  DPD   L+W TLLS     G
Sbjct: 448 SISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF--LIWSTLLSICSTKG 505

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            +  A  A+  L E +  +A  Y+ LSN YA  G W++V S+R+ MK   + K  G SW+
Sbjct: 506 DIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWI 565

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           EI ++ + F + +       ++   L  L  K++E G+    T LV  DV ++ + + + 
Sbjct: 566 EIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPN-TNLVLHDVGEDEKFKSIC 624

Query: 536 LHSERLALAFGLISIPKGIT-IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
            HSE+LALAFGLI  P GI+ IRI+KN+R+C DCH+  K  S I+ R  ++RD NRFHHF
Sbjct: 625 FHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHF 684

Query: 595 RNGSCSCGDFW 605
             G CSC D W
Sbjct: 685 STGKCSCNDNW 695


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/533 (38%), Positives = 305/533 (57%), Gaps = 37/533 (6%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G     + +F +M  + V P+  TF  ++++ +  + L  G+ +H  I  FG   +  V 
Sbjct: 43  GPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQ 102

Query: 167 SSLVDMYGKCNDVDGARRVFD-------------------------------LMGCRNVV 195
           +SL+ MY  C ++  AR+VFD                               +M  RNV+
Sbjct: 103 TSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVI 162

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAH 253
           SW+ +I  + +  Q  EAL +FRE      +  RPN+  ++ V+ AC  LG L  GK AH
Sbjct: 163 SWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAH 222

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGLG 312
             + + G   + V+ +AL+DMYAKCGSV  +  VF+ +  N  V+ +++MI G A +GL 
Sbjct: 223 AYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLA 282

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
              + LF++MI++G++PN VTF+ V  AC H GLV EG  +L  M   Y IIP  +HY C
Sbjct: 283 EECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGC 342

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           +VD+ GR GR+ EA+ + KS+ ++PD   L+WG LLS SR+HG ++    A  +LIE   
Sbjct: 343 MVDLYGRAGRIKEAWNVVKSMPMEPD--VLVWGALLSGSRMHGDIETCELALKKLIELEP 400

Query: 433 QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFE 492
             + AYV LSN YA  G WE+V  +R  M+  GI K PGCS +E+    + F+ G+    
Sbjct: 401 TNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHP 460

Query: 493 RGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPK 552
              ++  +L E+  ++K  GYVG  T  V +D+++E +E  + LHSE+LALA+G +    
Sbjct: 461 ETRQIHMMLEEILERLKVEGYVG-NTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSP 519

Query: 553 GITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G  IRI+KNLR+CRDCH   K+IS + +R+ +VRD NRFHHF  G CSC D+W
Sbjct: 520 GTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 46/324 (14%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT    +Q       L    SVH++IL+ G   + F    LI+ Y        ARQ+FDE
Sbjct: 65  HTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDE 124

Query: 88  MLEP-------------------------------NVVSYTSLMAGYINMGQPQIALLLF 116
           + +P                               NV+S++ ++ GY+  GQ + AL LF
Sbjct: 125 IPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALF 184

Query: 117 Q--KMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
           +  +MLG N V PNEFT + V+ AC  L  L  GK  H +I+  G   ++V+ ++L+DMY
Sbjct: 185 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMY 244

Query: 174 GKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
            KC  V+ A  VF  +G  ++V++W+++I   A +    E + +F +   Q   RPN   
Sbjct: 245 AKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV-RPNAVT 303

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS-----ALVDMYAKCGSVNYSDKV 287
             +V  AC   G +  GK      +R   E   ++ +      +VD+Y + G +  +  V
Sbjct: 304 FLAVFCACVHGGLVSEGK----DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNV 359

Query: 288 FNRIS-NPSVVTYTSMIVGAAKYG 310
              +   P V+ + +++ G+  +G
Sbjct: 360 VKSMPMEPDVLVWGALLSGSRMHG 383


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 328/564 (58%), Gaps = 4/564 (0%)

Query: 43  LISLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           L +L  +H   LK  F+ +N    N  +  Y +      A ++F  +    V S+ +L+ 
Sbjct: 408 LPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIG 467

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY     P+++L  + +M  + + P+ FT  +++ ACS +  L  GK++H  I     + 
Sbjct: 468 GYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLER 527

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  V  SL+ +Y  C ++  A  +FD M  + +VSW +++  + QN     AL +FR+  
Sbjct: 528 DSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMV 587

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                +P +  + SV  AC+ L  L  G+ AHG  ++   E N  +A +++DMYAK GSV
Sbjct: 588 LYGV-QPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSV 646

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             S KVFN +   SV ++ +M++G   +G  + ++ LF EM   G  P+++TF+GVL AC
Sbjct: 647 MESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTAC 706

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +HSGLV EG+ +LD M   +G+ P  KHY CV+DML R G+LDEA K+A   ++  + G 
Sbjct: 707 NHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATE-EMSEEPGV 765

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W  LLS+ R+H  +++  + + +L  S  +    YV LSN YA +G+W+ V  +R  M
Sbjct: 766 GIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRM 825

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K   + K+ GCSW+E+  + ++F AG +  +   E+ SL   LER++ + GY    T  V
Sbjct: 826 KEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGY-RPDTSSV 884

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             D+ +E + E +  HSE+LA+ +GLI   +G T+R+ KNLR+C DCH+  KLIS ++ER
Sbjct: 885 QHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMER 944

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + VVRD  RFHHF+NG CSCGD+W
Sbjct: 945 EIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 7/300 (2%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H  + +S  LSN   L   +I  Y        +R +FD + + N+  + ++++ Y    
Sbjct: 103 IHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNE 162

Query: 108 QPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                L +F KM+    + P+ FTF  V+KAC+ ++++  G  +H  +       ++ V 
Sbjct: 163 LYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVS 222

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++LV  YG    V  A RVF +M  RN+VSW S+I   + N    E   +  +   +  +
Sbjct: 223 NALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDE 282

Query: 227 ---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+   LA+V+  CA    +  GK  HG+ ++   +   VV +AL+DMY+KCG +N 
Sbjct: 283 IAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCIND 342

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKPNDVTFVGVLHAC 341
           +  +F   +N +VV++ +M+ G +  G    + DL  +M++ G  ++ ++VT +  +  C
Sbjct: 343 AQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 145/313 (46%), Gaps = 9/313 (2%)

Query: 143 DLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           D+  G++IH  + E+     + V+C+ ++ MY  C   D +R VFD +  +N+  W ++I
Sbjct: 96  DIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVI 155

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
            ++++N   H  LEMF +   +S   P+      V+ ACA +  +  G   HG+VV++  
Sbjct: 156 SSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRL 215

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V++ALV  Y   GSV+ + +VF  +   ++V++ SMI   +  GL      L  +
Sbjct: 216 VEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQ 275

Query: 322 MISR----GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           M+ +       P+  T   VL  C+    +  G + +  +  K  +  +      ++DM 
Sbjct: 276 MMEKDDEIAFTPDVATLATVLPVCARDREIGVG-KGVHGLAMKLSLDKEVVVNNALMDMY 334

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            + G +++A  + K   ++ +   + W T++      G +    +   Q++     +   
Sbjct: 335 SKCGCINDAQVIFK---LNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRAD 391

Query: 438 YVTLSNTYALAGE 450
            VT+ N   +  E
Sbjct: 392 EVTILNAVPVCFE 404



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 112/216 (51%), Gaps = 4/216 (1%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  + SL     VH  I+++    ++F    L++ Y+   +   A  LFD M +  +
Sbjct: 501 LSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTL 560

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ +++ GY+  G P+ AL LF++M+   V P E +  +V  ACS+L  L  G++ H +
Sbjct: 561 VSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGY 620

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                 + N  +  S++DMY K   V  + +VF+ +  R+V SW ++++ +  + +  EA
Sbjct: 621 ALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEA 680

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           +++F E   ++   P++     V+ AC   G +  G
Sbjct: 681 IKLFEEMQ-RTGHCPDELTFLGVLTACNHSGLVHEG 715


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/616 (33%), Positives = 336/616 (54%), Gaps = 43/616 (6%)

Query: 27  CHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV--RLKKTQVARQL 84
           C  K   I  ++ C  L  L  +H+++L +G L++   +   +             + Q+
Sbjct: 6   CIVKHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQV 65

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLA 142
            D    P + ++ S++  +     P  +   + ++L     + P+ +TF  +++  + L 
Sbjct: 66  LDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLL 125

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMY----------------------------- 173
              TG  +H     +GF+Y+  V S L+ MY                             
Sbjct: 126 AHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVS 185

Query: 174 --GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPN 229
              K  DV  AR++FD M  ++ ++W ++I  + Q  Q  EAL +   FN   R+  + N
Sbjct: 186 ACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSL---FNLMQREGVKVN 242

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  + SV++AC+ LG L  G+ AH  + R+       + +AL+DMYAKCG++N + +VF 
Sbjct: 243 EVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFW 302

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +   +V T++S I G A  G G   L+LF+ M    ++PN++TFV VL  CS  GLV+E
Sbjct: 303 GMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEE 362

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G +H +SM + YGI P  +HY C+VD+ GR G LDEA     S+ V P  G   WG LL+
Sbjct: 363 GRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGA--WGALLN 420

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A +++  +++   AS +++E   +   AYV LSN YA + +W+ V ++R  M   G+ K+
Sbjct: 421 ACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQ 480

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PGCS +E+  + + F+ G+    R +E+  +L E+ R++K  GYV   T  VF D+E+E 
Sbjct: 481 PGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYV-ANTNPVFFDIEEEE 539

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +E+ + +HSE++A+AFGLIS+   + IRI+KNLR+C DCHD  K+IS    R+ VVRD N
Sbjct: 540 KEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRN 599

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHFR+G CSC  +W
Sbjct: 600 RFHHFRDGECSCKGYW 615


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 335/581 (57%), Gaps = 23/581 (3%)

Query: 37  LQECKHL---ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L   ++ + +H+ ++++G   + +T + LIN Y +      AR++FDEM  P +
Sbjct: 61  LKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTI 120

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKM-------LGNLVWPNEFTFATVIKACSMLADLIT 146
             Y ++++GY    +P  A+ LF+KM       L   V  N  T  +++  CS+   L  
Sbjct: 121 C-YNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTI 179

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G  +H     FGF  +L V +SLV MY KC +V+ AR+VFD M  R++++W ++I  +AQ
Sbjct: 180 GVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQ 239

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N      LE++ E    S    +   L  V++ACA+LG    G+     + R G   N  
Sbjct: 240 NGHARCVLEVYSEMKL-SGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPF 298

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           + +ALV+MYA+CG++  + +VF+R    SVV++T++I G   +G G  +L+LF+EM+   
Sbjct: 299 LRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESA 358

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++P+   FV VL ACSH+GL D G+++   M RKYG+ P  +HY+CVVD+LGR GRL+EA
Sbjct: 359 VRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEA 418

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L KS++V PDG   +WG LL A ++H   +IA  A   ++E        YV LSN Y 
Sbjct: 419 VNLIKSMKVKPDGA--VWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYT 476

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            A   E V  +R  M+   + K+PG S+VE + +   FY+G+    +  ++  +L ELE 
Sbjct: 477 DANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELES 536

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIV--GLHSERLALAFGLISIPKGITIRIMKNLRM 564
            +KE      K        +  + E ++  G+HSE+LA+AF L++   G  I +MKNLR+
Sbjct: 537 LVKEVHPPNEK-------CQGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRV 589

Query: 565 CRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           C DCH   KL+S IV R F+VRD  RFHHFR+G CSC D+W
Sbjct: 590 CVDCHLFIKLVSKIVNRQFIVRDATRFHHFRDGICSCKDYW 630



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 173/330 (52%), Gaps = 13/330 (3%)

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           Q + AL L++ ML +  +PN FTF  ++K+C+ L+  +   Q+H H+   G Q +    S
Sbjct: 34  QYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRS 93

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD- 226
           SL++ Y KC+    AR+VFD M     + + ++I  ++ N++   A+ +FR+   +  D 
Sbjct: 94  SLINTYAKCSLHHHARKVFDEMP-NPTICYNAMISGYSFNSKPLHAVCLFRKMRREEEDG 152

Query: 227 -----RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                  N   L S+++ C+    L  G   HG  VR G   +  VA++LV MY KCG V
Sbjct: 153 LDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEV 212

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + KVF+ +    ++T+ +MI G A+ G  R  L++++EM   G+  + VT +GV+ AC
Sbjct: 213 ELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSAC 272

Query: 342 SHSGLVDEGIQHLDSMYRK-YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           ++ G    G +    + R+ +G  P  ++   +V+M  R G L  A ++        +  
Sbjct: 273 ANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCGNLTRAREV---FDRSGEKS 327

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            + W  ++    +HG  ++A+E  ++++ES
Sbjct: 328 VVSWTAIIGGYGIHGHGEVALELFDEMVES 357


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 324/557 (58%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+  +K+ + +       L++ Y +    + AR  F+ +   +V+ ++ +++ Y    Q
Sbjct: 654  IHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQ 713

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             + A  LF +M+ + V PNEF+ ++V++AC+ +  L  GKQIH H    G +  L V ++
Sbjct: 714  NEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNA 773

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            L+D+Y KC+D++ +  +F  +   N VSW +IIV ++++  G  AL +FRE    S    
Sbjct: 774  LIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPS- 832

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
             Q   +SV+ ACAS   +      H ++ +S    + +V+++L+D YAKCG +  + ++F
Sbjct: 833  TQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIF 892

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +    +V++ ++I G A +G    + +LF+ M    IK ND+TFV +L  C  +GLV 
Sbjct: 893  ETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVS 952

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            +G+   DSM   +GI P  +HYTC+V +LGR GRL++A      I   P    ++W  LL
Sbjct: 953  QGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSA--MVWRALL 1010

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            S+  +H  V++   ++ +++E   Q    YV LSN Y+ AG  + V   R  M+  G+ K
Sbjct: 1011 SSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRK 1070

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            EPG SWVEI+ + +AF  G+        + ++L  L  K    GYV   T  V  D+E+E
Sbjct: 1071 EPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYV-PDTDEVLHDLEEE 1129

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +  ++ +HSERLALA+GL+  P G  IRIMKNLR C DCH +FK+IS IV+++ +VRD+
Sbjct: 1130 QKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDI 1189

Query: 589  NRFHHFRNGSCSCGDFW 605
            NRFHHF  G+CSCGD+W
Sbjct: 1190 NRFHHFEEGTCSCGDYW 1206



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 3/307 (0%)

Query: 48  SVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +VH  +++SG L+  + F  N L+N Y ++     A ++FD + E N+VS+ +L+ G+  
Sbjct: 449 AVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHAL 508

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G+ + A  LFQ++       N+F   TV+K    +  L     +H      G   N  V
Sbjct: 509 RGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFV 568

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            S+L+D Y  C  V  ARRVFD +  ++ V+WT+++  +++N      L++F +    + 
Sbjct: 569 GSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRV-AV 627

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            + N   L SV+ A   L  +V GK  H   V++  +    V  AL+DMYAKCG++  + 
Sbjct: 628 SKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDAR 687

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             F  ++N  V+ ++ MI   A+      + +LF  M+   + PN+ +   VL AC++  
Sbjct: 688 LAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMP 747

Query: 346 LVDEGIQ 352
           L+D G Q
Sbjct: 748 LLDLGKQ 754



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 19/249 (7%)

Query: 11   FTLAASSLTRQNKRSSC-HTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLN 66
            F  AA S+ R+ + +S   T+  +   L+ C    S+     VH  I KS F S+T   N
Sbjct: 814  FGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSN 873

Query: 67   HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
             LI+ Y +    + AR++F+ + E ++VS+ ++++GY   GQ  +A  LF  M  N +  
Sbjct: 874  SLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKA 933

Query: 127  NEFTFATVIKAC------SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            N+ TF  ++  C      S    L    ++   IE     Y  +V   L+   G+ N  D
Sbjct: 934  NDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIV--RLLGRAGRLN--D 989

Query: 181  GARRVFDLMGCRNVVSWTSII---VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
                + D+    + + W +++   + H     G  + E   E   Q  D     +L+++ 
Sbjct: 990  ALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQ--DETTYVLLSNMY 1047

Query: 238  NACASLGRL 246
            +A  SL ++
Sbjct: 1048 SAAGSLDQV 1056



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDK 286
           + +  A ++  C + G    G+  HG VVRSG     +   A+ L++MY K G    + +
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           VF+ +   ++V++ +++ G A  G    +  LF  +   G + N      VL
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVL 538


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/536 (38%), Positives = 326/536 (60%), Gaps = 6/536 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y        A+++FDE+   +VVS+ +L++GY   G  + AL LF++M+   V P+
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPD 234

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+  A +  G+Q+H+ I+  GF  NL + ++L+D+Y KC +V+ A  +F+
Sbjct: 235 ESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFE 294

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +       EAL +F+E   +S + PN+  + S++ ACA LG + 
Sbjct: 295 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNEVTMLSILPACAHLGAID 353

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMYAKCG +  + +VF+ + N S+ ++ +MI G
Sbjct: 354 IGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFG 413

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    + D+F+ M   GI+P+D+TFVG+L ACSHSG++D G     SM   Y I P
Sbjct: 414 FAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITP 473

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG +G   EA ++  S+++DPDG  ++W +LL A ++HG V++    + 
Sbjct: 474 KLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDG--VIWCSLLKACKMHGNVELGESFAQ 531

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            LI+   + + +YV LSN YA AG W  V   R+ +   G+ K PGCS +EI    + F 
Sbjct: 532 NLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFI 591

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+ L  R  E+  +L E+E  ++E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 592 IGDKLHPRNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIAF 650

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           GLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFHHF +G CSC
Sbjct: 651 GLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 205/421 (48%), Gaps = 39/421 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNV 93
           L  CK L SL  +H++++K+G  +  + L+ LI   V          A  +FD + EPN+
Sbjct: 9   LHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNL 68

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + + ++  G+     P  AL L+  M+   + PN +TF  ++KAC+       G+QIH H
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGH 128

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL------------------------- 188
           +   G   +L V +SL+ MY K    + AR+VFD                          
Sbjct: 129 VLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSA 188

Query: 189 ------MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
                 +  ++VVSW ++I  +A+     EALE+F+E   ++  +P++  + +V++ACA 
Sbjct: 189 QKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEM-MKTNVKPDESTMVTVLSACAQ 247

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              +  G+  H  +   G   N  + +AL+D+Y KCG V  +  +F  +S   V+++ ++
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTL 307

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G     L + +L LF EM+  G  PN+VT + +L AC+H G +D G   H+    R  
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 367

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+   +   T ++DM  + G ++ A ++  S+    +     W  ++    +HGR + A 
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSML---NRSLSSWNAMIFGFAMHGRANPAF 424

Query: 422 E 422
           +
Sbjct: 425 D 425



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 40/343 (11%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS I   GF SN   +N LI+ Y++  + + A  LF+ +   +V+S+ +L+ GY +M  
Sbjct: 257 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNL 316

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF--GFQYNLVVC 166
            + ALLLFQ+ML +   PNE T  +++ AC+ L  +  G+ IH +I+    G      + 
Sbjct: 317 YKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR 376

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+DMY KC D++ A++VFD M  R++ SW ++I   A + + + A ++F        +
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P+      +++AC+  G L  G+     + RS  E   +                    
Sbjct: 437 -PDDITFVGLLSACSHSGMLDLGR----HIFRSMTEDYKIT------------------- 472

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
                  P +  Y  MI      GL + + ++ N M    + P+ V +  +L AC   G 
Sbjct: 473 -------PKLEHYGCMIDLLGHSGLFKEAEEMINSM---EMDPDGVIWCSLLKACKMHGN 522

Query: 347 VDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYK 388
           V+ G     ++ +   I P ++  Y  + ++    GR +E  K
Sbjct: 523 VELGESFAQNLIK---IEPKNSGSYVLLSNIYATAGRWNEVAK 562



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 133/310 (42%), Gaps = 42/310 (13%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG---ARRVFDLM 189
           +++  C  L  L   + IH  +   G        S L++        DG   A  VFD +
Sbjct: 7   SLLHNCKTLQSL---RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              N++ W ++   HA ++    AL ++          PN +    ++ ACA       G
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL-VPNSYTFPFLLKACAKSKAFREG 122

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  HG V++ GC+ +  V ++L+ MY K G    + KVF++ S+  VV+YT++I G A  
Sbjct: 123 QQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASN 182

Query: 310 GL-----------------------------GRF--SLDLFNEMISRGIKPNDVTFVGVL 338
           G                              G +  +L+LF EM+   +KP++ T V VL
Sbjct: 183 GYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVL 242

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC+ S  ++ G Q + S    +G   + K    ++D+  + G ++ A  L + +     
Sbjct: 243 SACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-- 299

Query: 399 GGPLLWGTLL 408
              + W TL+
Sbjct: 300 -DVISWNTLI 308


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 315/542 (58%), Gaps = 6/542 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN--L 123
           N +I  Y    + +   +LF EM   NV+S+TS++ G    G+ + AL LF++M+G    
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V P   T+  VI AC+  + L  G QIH H+   G+ ++  + ++L+  Y  C  ++ + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           RVF      NVV WT+++  +  N +  +AL++F E   +    PNQ    S +N+C  L
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV-LPNQSSFTSALNSCCGL 317

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             L  G+  H   V+ G E +  V ++L+ MY +CG++N    +F RIS  ++V++ S+I
Sbjct: 318 EALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVI 377

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
           VG A++G G ++L  FN+M+   ++P+++TF G+L ACSHSG+  +G             
Sbjct: 378 VGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSA 437

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
                HY C+VD+LGR+G+L+EA +L +++ V  +   ++W  LLSA  +H ++++A  A
Sbjct: 438 EVKLDHYACMVDILGRSGKLEEAEELIRNMPVKAN--SMVWLVLLSACTMHSKLEVAERA 495

Query: 424 SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYA 483
           +  +I+     ++AYV LSN YA A  W +V  +R EMK+ GI K+PG SW+ I+     
Sbjct: 496 AKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNE 555

Query: 484 FYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLAL 543
           F +G+        +   L  L  K+KE GYV  +      DVEDE +E ++  HSERLA+
Sbjct: 556 FLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQR-FALHDVEDEQKEVMLSYHSERLAI 614

Query: 544 AFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603
            FGLIS  +G TI +MKNLR+C DCH   KLI+ IV R  +VRD  RFHHF +G CSCGD
Sbjct: 615 GFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGD 674

Query: 604 FW 605
           +W
Sbjct: 675 YW 676



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 186/402 (46%), Gaps = 46/402 (11%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           TF+   +I  ++R ++   AR +FD++  P+V  YT ++ GY    +   AL LF +M  
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIH------------THIETF----------GF 159
             V     ++ ++IK C   ADL   +++             T I  F          G 
Sbjct: 71  KDV----VSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGL 126

Query: 160 QY-----NLVVCSSLVDMYGKCND--VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            Y     ++   +S++  YG C +  V+   R+F  M CRNV+SWTS+I    Q+ +  E
Sbjct: 127 FYKMPFRDIAAWNSMI--YGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEE 184

Query: 213 ALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL +FR+      + +P       VI ACA+   L  G   H  V + G  F+  +++AL
Sbjct: 185 ALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAAL 244

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG---RFSLDLFNEMISRGIK 328
           +  YA C  +  S +VF+   + +VV +T+++ G   YGL      +L +F EM+  G+ 
Sbjct: 245 ITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTG---YGLNCKHEDALKVFGEMMREGVL 301

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN  +F   L++C     +D G + + +   K G+  D      ++ M  R G L++   
Sbjct: 302 PNQSSFTSALNSCCGLEALDWG-REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVV 360

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           + K I        + W +++     HG    A+   NQ++ S
Sbjct: 361 IFKRIS---KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRS 399



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 108/202 (53%), Gaps = 1/202 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ + K G+  + +    LI  Y   K+ + + ++F   L  NVV +T+L+ GY    +
Sbjct: 225 IHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCK 284

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F +M+   V PN+ +F + + +C  L  L  G++IHT     G + ++ V +S
Sbjct: 285 HEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNS 344

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY +C +++    +F  +  +N+VSW S+IV  AQ+  G  AL  F +   +S   P
Sbjct: 345 LIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM-VRSMVEP 403

Query: 229 NQHMLASVINACASLGRLVSGK 250
           ++     +++AC+  G    G+
Sbjct: 404 DEITFTGLLSACSHSGMSQKGR 425


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 315/542 (58%), Gaps = 6/542 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN--L 123
           N +I  Y    + +   +LF EM   NV+S+TS++ G    G+ + AL LF++M+G    
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V P   T+  VI AC+  + L  G QIH H+   G+ ++  + ++L+  Y  C  ++ + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           RVF      NVV WT+++  +  N +  +AL++F E   +    PNQ    S +N+C  L
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV-LPNQSSFTSALNSCCGL 301

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             L  G+  H   V+ G E +  V ++L+ MY +CG++N    +F RIS  ++V++ S+I
Sbjct: 302 EALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVI 361

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
           VG A++G G ++L  FN+M+   ++P+++TF G+L ACSHSG+  +G             
Sbjct: 362 VGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSA 421

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
                HY C+VD+LGR+G+L+EA +L +++ V  +   ++W  LLSA  +H ++++A  A
Sbjct: 422 EVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANS--MVWLVLLSACTMHSKLEVAERA 479

Query: 424 SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYA 483
           +  +I+     ++AYV LSN YA A  W +V  +R EMK+ GI K+PG SW+ I+     
Sbjct: 480 AKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNE 539

Query: 484 FYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLAL 543
           F +G+        +   L  L  K+KE GYV  +      DVEDE +E ++  HSERLA+
Sbjct: 540 FLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQR-FALHDVEDEQKEVMLSYHSERLAI 598

Query: 544 AFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603
            FGLIS  +G TI +MKNLR+C DCH   KLI+ IV R  +VRD  RFHHF +G CSCGD
Sbjct: 599 GFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGD 658

Query: 604 FW 605
           +W
Sbjct: 659 YW 660



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 170/378 (44%), Gaps = 54/378 (14%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + +  + N +I          +AR+LFDEM E +VVS+T+++ G++  G+ ++A  LF K
Sbjct: 54  VKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYK 113

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M           F  +    SM+                               YG C +
Sbjct: 114 M----------PFRDIAAWNSMI-------------------------------YGYCCN 132

Query: 179 --VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLAS 235
             V+   R+F  M CRNV+SWTS+I    Q+ +  EAL +FR+      + +P       
Sbjct: 133 GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCC 192

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           VI ACA+   L  G   H  V + G  F+  +++AL+  YA C  +  S +VF+   + +
Sbjct: 193 VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMN 252

Query: 296 VVTYTSMIVGAAKYGLG---RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           VV +T+++ G   YGL      +L +F EM+  G+ PN  +F   L++C     +D G +
Sbjct: 253 VVIWTALVTG---YGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG-R 308

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
            + +   K G+  D      ++ M  R G L++   + K I        + W +++    
Sbjct: 309 EIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS---KKNIVSWNSVIVGCA 365

Query: 413 LHGRVDIAVEASNQLIES 430
            HG    A+   NQ++ S
Sbjct: 366 QHGCGMWALAFFNQMVRS 383



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 108/202 (53%), Gaps = 1/202 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ + K G+  + +    LI  Y   K+ + + ++F   L  NVV +T+L+ GY    +
Sbjct: 209 IHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCK 268

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F +M+   V PN+ +F + + +C  L  L  G++IHT     G + ++ V +S
Sbjct: 269 HEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNS 328

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY +C +++    +F  +  +N+VSW S+IV  AQ+  G  AL  F +   +S   P
Sbjct: 329 LIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM-VRSMVEP 387

Query: 229 NQHMLASVINACASLGRLVSGK 250
           ++     +++AC+  G    G+
Sbjct: 388 DEITFTGLLSACSHSGMSQKGR 409


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 333/576 (57%), Gaps = 7/576 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I  ++ C  +     +H +++KS    + F  + L+ CY+RL     A +LFDEM E +
Sbjct: 37  LIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERD 96

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW--PNEFTFATVIKACSMLADLITGKQI 150
           +VS+ SL++GY   G       +  +M+ + V   PNE TF ++I AC        G+ I
Sbjct: 97  LVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCI 156

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H  +  FG    + V ++ ++ YGK  D+  + ++F+ +  +N+VSW ++IV H QN   
Sbjct: 157 HGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLA 216

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            + L  F   + +    P+Q    +V+ +C  +G +   +  HG+++  G   N  + +A
Sbjct: 217 EKGLAYF-NMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTA 275

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+D+Y+K G +  S  VF+ I++P  + +T+M+   A +G GR ++  F  M+  GI P+
Sbjct: 276 LLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPD 335

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            VTF  +L+ACSHSGLV+EG  + ++M ++Y I P   HY+C+VD+LGR+G L +AY L 
Sbjct: 336 HVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLI 395

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           K + ++P  G  +WG LL A R++    +  +A+ +L E   +    YV LSN Y+ +G 
Sbjct: 396 KEMPMEPSSG--VWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGL 453

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK- 509
           W++   +R+ MK+ G+ +  GCS++E  ++ + F  G+       ++   L+E+ +KMK 
Sbjct: 454 WKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKS 513

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY   KT  V  DV ++ +EE++  HSE++A+AFGL+ +     I I KNLR+C DCH
Sbjct: 514 EMGY-KSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCH 572

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  K IS I +R  ++RD  RFHHF +GSCSC D+W
Sbjct: 573 ETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/540 (36%), Positives = 318/540 (58%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L+  Y      + AR +FDE+   +VVS+ ++++GY+  G  + AL LF++M+   V P+
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPD 194

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TVI A +    +  G+Q+H+ I   GF  NL + ++L+D Y KC +++ A  +F 
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW  +I  +       EAL +F+E   +S + PN   + S+++ACA LG + 
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEM-LRSGESPNDVTMLSILHACAHLGAID 313

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMY+KCG +  + +VFN + + S+  + +MI G
Sbjct: 314 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFG 373

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    + D+F+ M    IKP+D+TFVG+L ACSH+G++D G     SM   Y I P
Sbjct: 374 FAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITP 433

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG +G   EA ++  ++ ++PDG  ++W +LL A ++HG V++  + + 
Sbjct: 434 KLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDG--VIWCSLLKACKMHGNVELGEKFAQ 491

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            L +       +YV LSN YA AG W  V  +R  +   G+ K PGCS +EI    + F 
Sbjct: 492 NLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFI 551

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    R  E+  +L E+E  ++E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 552 IGDKFHPRNREIYGMLEEMEVLLQEAGFV-PDTSEVLQEMEEEFKEGALRHHSEKLAIAF 610

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS      + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFHHFR+G CSC D+W
Sbjct: 611 GLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 185/374 (49%), Gaps = 36/374 (9%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F+ + EPN++ + ++  G+     P  AL L+  M+   + PN +TF  ++K+C+ 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMY---------GKCND------------- 178
           L     G QIH H+   G++ +L V +SL+ MY          K  D             
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 179 ---------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
                    ++ AR +FD +  ++VVSW ++I  + +     EALE+F+E   ++  RP+
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEM-MKTNVRPD 194

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  + +VI+A A  G +  G+  H  +   G   N  + +AL+D Y+KCG +  +  +F 
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +S   V+++  +I G     L + +L LF EM+  G  PNDVT + +LHAC+H G +D 
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDI 314

Query: 350 GIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           G   H+    R  G+   +   T ++DM  + G ++ A+++  S+          W  ++
Sbjct: 315 GRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA---WNAMI 371

Query: 409 SASRLHGRVDIAVE 422
               +HGR + A +
Sbjct: 372 FGFAMHGRANAAFD 385



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 150/295 (50%), Gaps = 23/295 (7%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS I   GF SN   +N LI+ Y +  + + A  LF  +   +V+S+  L+ GY ++  
Sbjct: 217 VHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNL 276

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF--GFQYNLVVC 166
            + ALLLFQ+ML +   PN+ T  +++ AC+ L  +  G+ IH +I+    G      + 
Sbjct: 277 YKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 336

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+DMY KC D++ A +VF+ M  +++ +W ++I   A + + + A ++F     ++  
Sbjct: 337 TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMR-KNEI 395

Query: 227 RPNQHMLASVINACA-----SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           +P+      +++AC+      LGR +   + H   +    E        ++D+    G  
Sbjct: 396 KPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEH----YGCMIDLLGHSGLF 451

Query: 282 NYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LG-RFSLDLFNEMISRGIKPND 331
             ++++ + ++  P  V + S++     +G   LG +F+ +LF       I+PN+
Sbjct: 452 KEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFK------IEPNN 500


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 323/561 (57%), Gaps = 13/561 (2%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            VH   +++G +S+    +  I+ Y+R      AR LFD++   +V ++ +++ G      
Sbjct: 546  VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRC 605

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             + AL LF +M      P+  TF  ++ A      L   K++H+H    G   +L V ++
Sbjct: 606  GREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNA 664

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA----LEMFREFNYQS 224
            LV  Y KC +V  A++VFD M  RNV +WT +I   AQ+  GH+A    L+M RE     
Sbjct: 665  LVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIV-- 722

Query: 225  RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               P+     S+++ACAS G L   K  H   V +G   +  V +ALV MYAKCGS++ +
Sbjct: 723  ---PDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDA 779

Query: 285  DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              VF+ +    V ++T MI G A++G G  +LD F +M S G KPN  ++V VL ACSH+
Sbjct: 780  RSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHA 839

Query: 345  GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            GLVDEG +   SM + YGI P  +HYTC+VD+LGR G L+EA     ++ ++PD  P  W
Sbjct: 840  GLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAP--W 897

Query: 405  GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            G LL A   +G +++A  A+ + ++   + A+ YV LSN YA  G+WE    +RS M+R 
Sbjct: 898  GALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRK 957

Query: 465  GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            GI KEPG SW+E+ ++ ++F  G+       E+ + L +L  ++K +GYV   T LV  +
Sbjct: 958  GIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYV-PDTRLVLRN 1016

Query: 525  VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
             + E +E+ +  HSE+LA+ +GL+       IR+ KNLR+C DCH   K IS I  R+ V
Sbjct: 1017 TDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIV 1076

Query: 585  VRDVNRFHHFRNGSCSCGDFW 605
             RD  RFHHF++G CSCGD+W
Sbjct: 1077 ARDAKRFHHFKDGVCSCGDYW 1097



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 168/586 (28%), Positives = 285/586 (48%), Gaps = 53/586 (9%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  LQ C   + ++    VH  I+KSG   N +  N L+  Y+R  + Q ARQ+FD++L
Sbjct: 121 YVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLL 180

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N+  +T+++ GY   G  + A+ ++ KM      PNE T+ +++KAC    +L  GK+
Sbjct: 181 KKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKK 240

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH HI   GFQ ++ V ++LV+MY KC  ++ A+ +FD M  RNV+SWT +I   A   +
Sbjct: 241 IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGR 300

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
           G EA  +F +   +    PN +   S++NA AS G L   K  H   V +G   +  V +
Sbjct: 301 GQEAFHLFLQMQREGF-IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALV MYAK GS++ +  VF+ ++   + ++T MI G A++G G+ +  LF +M   G  P
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLP 419

Query: 330 NDVTFVGVLHA---CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           N  T++ +L+A    S S L  E ++ +     + G I D +    ++ M  + G +D+A
Sbjct: 420 NLTTYLSILNASAIASTSAL--EWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA 477

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ----VANAYVTLS 442
            +L      D D   + W  ++     +G      EA    ++  Q+     +  Y++L 
Sbjct: 478 -RLVFDGMCDRD--VISWNAMMGGLAQNG---CGHEAFTVFLQMQQEGLVPDSTTYLSLL 531

Query: 443 NTYALAGEWENVHSLRSEMKRTG-----------IHKEPGCSWVE----------IRDQT 481
           NT+      E V+ +      TG           IH    C  ++          +R  T
Sbjct: 532 NTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVT 591

Query: 482 Y--AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV---DVEDEAREEIVGL 536
              A   G A    G E LSL  +++R+    G++   T  + +   +V++EA E +  +
Sbjct: 592 TWNAMIGGAAQQRCGREALSLFLQMQRE----GFIPDATTFINILSANVDEEALEWVKEV 647

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
           HS   A   GL+ +  G    ++     C +     ++  D+VER+
Sbjct: 648 HSH--ATDAGLVDLRVGNA--LVHTYSKCGNVKYAKQVFDDMVERN 689



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 172/334 (51%), Gaps = 12/334 (3%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + F++  +++ C    D++  KQ+H  I   G + NL V + L+ +Y +C  +  AR+VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D +  +N+  WT++I  +A+     +A+ ++ +   Q   +PN+    S++ AC     L
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMR-QECGQPNEITYLSILKACCCPVNL 235

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  H  +++SG + +  V +ALV+MY KCGS+  +  +F+++   +V+++T MI G 
Sbjct: 236 KWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGL 295

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A YG G+ +  LF +M   G  PN  T+V +L+A + +G + E ++ + S     G+  D
Sbjct: 296 AHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL-EWVKEVHSHAVNAGLALD 354

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +    +V M  ++G +D+A  +   +    +     W  ++     HGR   A     Q
Sbjct: 355 LRVGNALVHMYAKSGSIDDARVVFDGM---TERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 411

Query: 427 LIESNQQVAN--AYVTLSNTYALAG----EWENV 454
           + + N  + N   Y+++ N  A+A     EW  V
Sbjct: 412 M-QRNGCLPNLTTYLSILNASAIASTSALEWVKV 444


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 327/597 (54%), Gaps = 32/597 (5%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQ--QLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           +++  L + +  S    KAH +    L  C  +  L   HS+I++ G  ++   +  +I 
Sbjct: 1   MSSLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIK 60

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
            +  + K+                       GY+     +  + ++ +ML   V PN+FT
Sbjct: 61  -FCAISKS-----------------------GYLRWQLARNCIFMYSRMLHKSVSPNKFT 96

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           +  +I+AC +   +  GKQIH H+  FGF  +    ++L+ MY     ++ ARRVFD M 
Sbjct: 97  YPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 156

Query: 191 CR--NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
            R  N VSW ++I A+ Q+ + HEA  +F     ++    ++ + AS+++AC  LG L  
Sbjct: 157 QRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL-DKFVAASMLSACTGLGALEQ 215

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  HG + +SG E +  +A+ ++DMY KCG +  + +VFN +    + ++  MI G A 
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           +G G  +++LF EM    + P+ +TFV VL AC+HSGLV+EG  +   M    G+ P  +
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
           H+ C+VD+LGR G L+EA KL   + V+PD G L  G L+ A R+HG  ++  +   ++I
Sbjct: 336 HFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVL--GALVGACRIHGNTELGEQIGKKVI 393

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
           E     +  YV L+N YA AG WE+V  +R  M   G+ K PG S +E       F AG 
Sbjct: 394 ELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGG 453

Query: 489 ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
               +  E+ + L E+   ++  GYV    G V  D+++E +E  +  HSE+LA+AFGL+
Sbjct: 454 RAHPQAKEIYAKLDEILETIRSIGYVPDTDG-VLHDIDEEEKENPLYYHSEKLAIAFGLL 512

Query: 549 SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
               G T+RI KNLR+CRDCH   KLIS + +R+ ++RD NRFHHFR G CSC D+W
Sbjct: 513 KTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/613 (37%), Positives = 339/613 (55%), Gaps = 14/613 (2%)

Query: 1    MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHL--ISLAS-VHSEILKSG 57
            M   L +N  F  A  +     +     +    I  L  C  L  IS+   +H E LK G
Sbjct: 461  MITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLG 520

Query: 58   FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI--ALLL 115
               +    N L+  Y      +  ++ F  ML+ + VS+ SL+ G +   +P +  A+  
Sbjct: 521  LDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLI-GALADSEPSMLEAVES 579

Query: 116  FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
            F  M+     PN  TF T++ A S L+    GKQIH  +       +  + ++L+  YGK
Sbjct: 580  FLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGK 639

Query: 176  CNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
            C D+     +F  M  R + VSW S+I  +  N    +A++M   F  Q   R +    A
Sbjct: 640  CGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVW-FMMQKGQRLDGFTFA 698

Query: 235  SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
            +V++ACA++  L  G   HG  VR+  E + V+ SALVDMYAKCG ++Y+ + F  +   
Sbjct: 699  TVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPAR 758

Query: 295  SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
            ++ ++ SMI G A++G G  SLDLF +M  +G  P+ VTFVGVL ACSH+GLV+EG  H 
Sbjct: 759  NLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHF 818

Query: 355  DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA-SRL 413
            DSM   YG+ P  +H++C+VD+LGR G L++       + V P+   L+W T+L A  R 
Sbjct: 819  DSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPN--VLIWRTVLGACCRA 876

Query: 414  HGR-VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
            +GR   +   A+  L+E     A  Y+ LSN YA  G+W++V   R  M++  + KE GC
Sbjct: 877  NGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGC 936

Query: 473  SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
            SWV ++D  + F AG+        +   L+EL  KM+  GY+  +T     D+E E++EE
Sbjct: 937  SWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYI-PETRFALYDLEGESKEE 995

Query: 533  IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            ++  HSE++A+AF +++ P  + IRI+KNLR+C DCH  FK IS IVER  V+RD NRFH
Sbjct: 996  LLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFH 1054

Query: 593  HFRNGSCSCGDFW 605
            HF NG CSCGDFW
Sbjct: 1055 HFENGKCSCGDFW 1067



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 174/356 (48%), Gaps = 34/356 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H ++ K+GF+++ F  N LIN Y R+      R++FDEM   N+VS++ L++GY     
Sbjct: 95  LHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRM 154

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD--LITGKQIHTHIETFGFQYNLVVC 166
           P  A  LF+KM+ +   PN + F +VI+AC    +  L  G QIH  +    +  ++   
Sbjct: 155 PNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTAS 214

Query: 167 SSLVDMYGKC-NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           + L+ MYG     VD ARR FD +  RN+VS  S+I  + Q      A ++F     +  
Sbjct: 215 NVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVM 274

Query: 226 D---RPNQHMLASVINACASLGR--LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
               +PN++   S+I+A  SL    LV  +     V +SG   +  V SALV  +AK GS
Sbjct: 275 GDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGS 334

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLH 339
           + Y+  +F ++S  +VV+   +I+G  +   G  +++LF EM  S  + PN    +    
Sbjct: 335 IGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAF 394

Query: 340 ACSH------------------SGLVDEGI---QHLDSMYRKYGIIPDAKHYTCVV 374
              H                  SGL++  I     L +MY K G I DA    CVV
Sbjct: 395 PEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDA----CVV 446



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 183/372 (49%), Gaps = 8/372 (2%)

Query: 47  ASVHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           + VH+ +++SG L+    + N LIN Y +      A  +F  M   + V++ S++ G   
Sbjct: 408 SEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQ 467

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             Q   A+  FQ+M    ++P+ FT  + + +C+ L  +  G+Q+H      G   ++ V
Sbjct: 468 NKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSV 527

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH-EALEMFREFNYQS 224
            ++L+ +YG+C  V   ++ F LM   + VSW S+I A A +     EA+E F       
Sbjct: 528 SNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAG 587

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
            D PN+    +++ A +SL     GK  H +V++     +  + +AL+  Y KCG + Y 
Sbjct: 588 WD-PNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYC 646

Query: 285 DKVFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + +F+R+S+    V++ SMI G     L   ++D+   M+ +G + +  TF  VL AC+ 
Sbjct: 647 ENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACAT 706

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
              ++ G++ +     +  +  D    + +VDM  + GR+D A +     ++ P      
Sbjct: 707 VATLERGME-VHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRF---FEMMPARNLYS 762

Query: 404 WGTLLSASRLHG 415
           W +++S    HG
Sbjct: 763 WNSMISGYARHG 774



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 173/347 (49%), Gaps = 9/347 (2%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+ L  + + + KSGFL + +  + L++ + +      A+ +F +M   NVVS   L+ G
Sbjct: 300 LVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIG 359

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            +   + + A+ LF +M  + V  N  ++  ++ A      L  GK+  + +  F  +  
Sbjct: 360 LVRQKRGEEAVELFMEM-KDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSG 418

Query: 163 LV-----VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           L+     + + L++MY KC  ++ A  VF LM  ++ V+W S+I    QN Q  EA++ F
Sbjct: 419 LLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTF 478

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +E   ++   P+   + S +++CASLG +  G+  H   ++ G + +  V++AL+ +Y +
Sbjct: 479 QEMR-RTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGE 537

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF-SLDLFNEMISRGIKPNDVTFVG 336
           CG V    K F+ + +   V++ S+I   A        +++ F  M+  G  PN VTF+ 
Sbjct: 538 CGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFIT 597

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           +L A S   L + G Q + ++  K  +  D      ++   G+ G +
Sbjct: 598 ILAAVSSLSLHELGKQ-IHALVLKRNVAADTAIENALLACYGKCGDM 643



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 15/251 (5%)

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            +++H  +   GF  +L +C++L+++Y +  D+   R+VFD M  RN+VSW+ +I  + +
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR--LVSGKVAHGVVVRSGCEFN 264
           N   +EA E+FR+        PN +   SVI AC   G   L  G   HG++ ++    N
Sbjct: 152 NRMPNEACELFRKM-VSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQ-YVN 209

Query: 265 DVVAS-ALVDMYAKC-GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN-- 320
           DV AS  L+ MY    G V+Y+ + F+ I   ++V+  SMI    + G    + D+F+  
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 321 --EMISRGIKPNDVTFVGVLHA-CS--HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
             E++  G+KPN+ TF  ++ A CS  +SGLV   ++ L +   K G + D    + +V 
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVL--LEQLLTRVEKSGFLHDLYVGSALVS 327

Query: 376 MLGRTGRLDEA 386
              + G +  A
Sbjct: 328 GFAKAGSIGYA 338


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/591 (34%), Positives = 331/591 (56%), Gaps = 39/591 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK G   + F  N L+  Y      + AR +FD+M+E +VVS+++++       +
Sbjct: 146 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 205

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVC 166
             +AL L ++M    V P+E    +++   +  A++  GK +H ++   +      +   
Sbjct: 206 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT 265

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+DMY KC  +  AR++F+ +  + VVSWT++I    ++ +  EA  +F   + Q+RD
Sbjct: 266 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFD--STQNRD 323

Query: 227 --------------------------------RPNQHMLASVINACASLGRLVSGKVAHG 254
                                           RP +  + S+++ CA  G L  GK  H 
Sbjct: 324 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            + +   E + ++ +ALVDMYAKCG +N + ++F    +  +  + ++I G A +G G  
Sbjct: 384 YIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEE 443

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +LD+F EM  +G+KPND+TF+G+LHACSH+GLV EG +  + M   +G++P  +HY C+V
Sbjct: 444 ALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMV 503

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+LGR G LDEA+++ KS+ + P+   ++WG L++A RLH    +   A+ QL+E   + 
Sbjct: 504 DLLGRAGLLDEAHEMIKSMPIKPNT--IVWGALVAACRLHKNPQLGELAATQLLEIEPEN 561

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
               V +SN YA A  W +   +R  MK  G+ KEPG S +E+    + F  G+    + 
Sbjct: 562 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQI 621

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
             +  +L E+ RK+ E GYV   T  V +++++E +E  +  HSE+LA+AFGLIS     
Sbjct: 622 RRINEMLAEMRRKLNEAGYV-PDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 680

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IRI+KNLR+C DCH   KL+S I  R  +VRD NRFHHFR G CSCGD+W
Sbjct: 681 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 193/391 (49%), Gaps = 45/391 (11%)

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           Q+    F   L P+   +  ++  Y    QP+ AL ++ ++       + F   +V+KAC
Sbjct: 76  QIPLNDFPSGLSPSA-QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKAC 134

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
             ++    GK+IH  +   G   ++ V ++L+ MYG+C  V+ AR VFD M  R+VVSW+
Sbjct: 135 GQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWS 194

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I + ++N +   ALE+ RE N+  + RP++  + S++N  A    +  GK  H  V+R
Sbjct: 195 TMIRSLSRNKEFDMALELIREMNFM-QVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIR 253

Query: 259 -SGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA---------- 306
            S  E   V   +AL+DMYAKCG +  + ++FN ++  +VV++T+MI G           
Sbjct: 254 NSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEAR 313

Query: 307 ---------------------AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
                                A+      + +LF++M + G++P  VT V +L  C+ +G
Sbjct: 314 ALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 373

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLW 404
            +D G + + S   K  +  D    T +VDM  + G ++ A +L  ++I  D      +W
Sbjct: 374 ALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD----ICMW 428

Query: 405 GTLLSASRLHG----RVDIAVEASNQLIESN 431
             +++   +HG     +DI  E   Q ++ N
Sbjct: 429 NAIITGFAMHGYGEEALDIFAEMERQGVKPN 459


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 321/564 (56%), Gaps = 4/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL+    VH+ +L+S  + N F  N L++ Y +       R+LFDEM E + VSY  ++A
Sbjct: 251 HLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            Y         L LF++M           +AT++     L D+  GKQIH  +   G   
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 370

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
             ++ ++L+DMY KC  +D A+  F     ++ +SWT++I  + QN Q  EAL++F +  
Sbjct: 371 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 430

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            ++  RP++   +S+I A +SL  +  G+  H  ++RSG + +    S LVDMYAKCG +
Sbjct: 431 -RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + + F+ +   + +++ ++I   A YG  + ++ +F  M+  G  P+ VTF+ VL AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH+GL DE +++   M  +Y I P  +HY CV+D LGR G   +  K+   +    D  P
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKAD--P 607

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W ++L + R+HG  ++A  A+++L       A  YV LSN YA AG+WE+   ++  M
Sbjct: 608 IIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIM 667

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +  G+ KE G SWVEI+ + Y+F + +       E+   L  L ++M ++GY    T  +
Sbjct: 668 RDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCAL 727

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            + V+ E + E +  HSERLA+AF L++ P G  IRIMKNL  C DCH V K+IS IV R
Sbjct: 728 HM-VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNR 786

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           D +VRD  RFHHF++G CSCGD+W
Sbjct: 787 DIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 192/378 (50%), Gaps = 5/378 (1%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           ++ S+H   +K G  ++ F  N L++ Y +      AR++F EM + + V+Y ++M G  
Sbjct: 153 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 212

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
             G    AL LF  M    +    FTF++++   + +A L+ G Q+H  +       N+ 
Sbjct: 213 KEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVF 272

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V +SL+D Y KC+ +D  RR+FD M  R+ VS+  II A+A N      L +FRE     
Sbjct: 273 VNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLG 332

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
            DR      A++++   SL  +  GK  H  +V  G    D++ +AL+DMY+KCG ++ +
Sbjct: 333 FDR-QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 391

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              F+  S  S +++T++I G  + G    +L LF++M   G++P+  TF  ++ A S  
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            ++  G Q L S   + G        + +VDM  + G LDEA +    +   P+   + W
Sbjct: 452 AMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM---PERNSISW 507

Query: 405 GTLLSASRLHGRVDIAVE 422
             ++SA   +G    A++
Sbjct: 508 NAVISAYAHYGEAKNAIK 525



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 182/411 (44%), Gaps = 18/411 (4%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N F+LN +++ Y        A+ LF      N  ++T +M  +   G+   AL LF+ ML
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
           G  V P+  T  TV+          T   +H     FG   ++ VC++L+D Y K   + 
Sbjct: 133 GEGVIPDRVTVTTVLNLPG-----CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-LASVINA 239
            ARRVF  M  ++ V++ ++++  ++     +AL++F     +    P  H   +S++  
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGIPATHFTFSSILTV 245

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            A +  L+ G   H +V+RS    N  V ++L+D Y+KC  ++   ++F+ +     V+Y
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSY 305

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
             +I   A        L LF EM   G     + +  +L        V  G Q + +   
Sbjct: 306 NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLV 364

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
             G+  +      ++DM  + G LD A     +     +   + W  L++    +G+ + 
Sbjct: 365 LLGLASEDLLGNALIDMYSKCGMLDAA---KSNFSNRSEKSAISWTALITGYVQNGQHEE 421

Query: 420 AVEASNQL----IESNQQVANAYVTLSNTYALAGEWENVHS--LRSEMKRT 464
           A++  + +    +  ++   ++ +  S++ A+ G    +HS  +RS  K +
Sbjct: 422 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/632 (33%), Positives = 342/632 (54%), Gaps = 79/632 (12%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---------ARQLFDEMLEPNVVSYTSL 99
           +H  ++KSG    T  LN LI+ YV+   +           AR+LFDEM   + +S+T++
Sbjct: 170 LHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTI 229

Query: 100 MAGYIN-----------------MGQPQIALL--------------LFQKMLGNLVWPNE 128
           + GY+                  +G    A++              +F+KM+ + +  +E
Sbjct: 230 ITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDE 289

Query: 129 FTFATVIKACSMLADLITGKQIHTH----IETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           FTF +VI  C+       GK++H +    +        + V ++L+  Y KC  VD A+ 
Sbjct: 290 FTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQE 349

Query: 185 VFDLMGCRNVVSWTSIIVAH-------------------------------AQNAQGHEA 213
           +F+ M  R++VSW  I+  +                               AQ     EA
Sbjct: 350 IFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEA 409

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L+ F     Q  + P  +  A  I +C+ LG L  G+  H  VVR G E +    +AL+ 
Sbjct: 410 LKFFNRMKLQGFE-PCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALIT 468

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYA+CG V+ +  +F  +     +++ +MI    ++G G  +++LF EM+  GI P+ ++
Sbjct: 469 MYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRIS 528

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ V+ ACSH+GLV EG ++ DSM+  YG+ PD +HY  ++D+L R G+  EA ++ +S+
Sbjct: 529 FLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESM 588

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
             +P G P +W  LL+  R+HG +D+ +EA+ +L E   Q    YV LSN YA+AG+W +
Sbjct: 589 PFEP-GAP-IWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWND 646

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           +  +R  M+  G+ KEPGCSW+E+ ++ ++F  G+A      ++ + L +L  +M++ GY
Sbjct: 647 MAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGY 706

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   T  V  DVE + +E  +  HSE+LA+A+G + +P G T+R+ KNLR+C DCH+ FK
Sbjct: 707 V-PDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFK 765

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +S +V R+ VVRD  RFHHFR+G CSCGD+W
Sbjct: 766 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 207/495 (41%), Gaps = 115/495 (23%)

Query: 45  SLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           SLA  VH+ ++ SGF      LN LI+ Y +  K   AR LFDE+ +P++V+ T+L+A Y
Sbjct: 30  SLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY 89

Query: 104 INMGQPQI---------------------------------ALLLFQKMLGNLVWPNEFT 130
              G  ++                                 A+ LF  M  +   P+ +T
Sbjct: 90  SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYT 149

Query: 131 FATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCSSLVDMYGKCND---------VD 180
           F +V+ A +++A+     +Q+H  +   G  +   V ++L+  Y KC           + 
Sbjct: 150 FTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMA 209

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQN--------------------------AQGH--- 211
            AR++FD M  R+ +SWT+II  + +N                             H   
Sbjct: 210 EARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 212 --EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA- 268
             EA EMFR+    S+ + ++    SVI+ CA+ G    GK  H   +++       VA 
Sbjct: 270 YLEAFEMFRKM-IMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 269 ---SALVDMYAKCGSVNYSDKVFNR-------------------------------ISNP 294
              +AL+  Y KCG V+ + ++FN+                               +   
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK 388

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           +++++  MI G A+ G    +L  FN M  +G +P D  F G + +CS  G +  G Q L
Sbjct: 389 NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ-L 447

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            +   +YG          ++ M  R G +D A+ L  ++   P    + W  +++A   H
Sbjct: 448 HAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINM---PCVDAISWNAMIAALGQH 504

Query: 415 GRVDIAVEASNQLIE 429
           G+   A+E   ++++
Sbjct: 505 GQGTQAIELFEEMLK 519



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 41/298 (13%)

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           Q ++V  ++L+  Y    D+  +R++F    +G R+ V + ++I A++ N  GH A+E+F
Sbjct: 76  QPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELF 135

Query: 218 REFNYQSRD--RPNQHMLASVINACASLGRLVSGKVA-----HGVVVRSGCEFNDVVASA 270
            +     RD  RP+ +   SV+ A A    LV+ K       H  VV+SG  F   V +A
Sbjct: 136 CDMQ---RDNFRPDNYTFTSVLGALA----LVAEKEKHCQQLHCAVVKSGTGFVTSVLNA 188

Query: 271 LVDMYAKCGS---------VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           L+  Y KC +         +  + K+F+ + N   +++T++I G  K       LD   E
Sbjct: 189 LISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNN----DLDAAKE 244

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY---GIIPDAKHYTCVVDMLG 378
            ++   K   V +  ++   +H GL  E  +    M+RK     I  D   +T V+ +  
Sbjct: 245 FLNGTSKKLGVAWNAMISGYAHRGLYLEAFE----MFRKMIMSKIQLDEFTFTSVISVCA 300

Query: 379 -----RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
                R G+   AY L       PD    +   L++     G+VDIA E  N++ E +
Sbjct: 301 NAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERD 358


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 321/564 (56%), Gaps = 4/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL+    VH+ +L+S  + N F  N L++ Y +       R+LFDEM E + VSY  ++A
Sbjct: 251 HLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            Y         L LF++M           +AT++     L D+  GKQIH  +   G   
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 370

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
             ++ ++L+DMY KC  +D A+  F     ++ +SWT++I  + QN Q  EAL++F +  
Sbjct: 371 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 430

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            ++  RP++   +S+I A +SL  +  G+  H  ++RSG + +    S LVDMYAKCG +
Sbjct: 431 -RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + + F+ +   + +++ ++I   A YG  + ++ +F  M+  G  P+ VTF+ VL AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH+GL DE +++   M  +Y I P  +HY CV+D LGR G   +  K+   +    D  P
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKAD--P 607

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W ++L + R+HG  ++A  A+++L       A  YV LSN YA AG+WE+   ++  M
Sbjct: 608 IIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIM 667

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +  G+ KE G SWVEI+ + Y+F + +       E+   L  L ++M ++GY    T  +
Sbjct: 668 RDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCAL 727

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
            + V+ E + E +  HSERLA+AF L++ P G  IRIMKNL  C DCH V K+IS IV R
Sbjct: 728 HM-VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNR 786

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           D +VRD  RFHHF++G CSCGD+W
Sbjct: 787 DIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 192/378 (50%), Gaps = 5/378 (1%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           ++ S+H   +K G  ++ F  N L++ Y +      AR++F EM + + V+Y ++M G  
Sbjct: 153 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 212

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
             G    AL LF  M    +    FTF++++   + +A L+ G Q+H  +       N+ 
Sbjct: 213 KEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVF 272

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V +SL+D Y KC+ +D  RR+FD M  R+ VS+  II A+A N      L +FRE     
Sbjct: 273 VNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLG 332

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
            DR      A++++   SL  +  GK  H  +V  G    D++ +AL+DMY+KCG ++ +
Sbjct: 333 FDR-QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 391

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              F+  S  S +++T++I G  + G    +L LF++M   G++P+  TF  ++ A S  
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            ++  G Q L S   + G        + +VDM  + G LDEA +    +   P+   + W
Sbjct: 452 AMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM---PERNSISW 507

Query: 405 GTLLSASRLHGRVDIAVE 422
             ++SA   +G    A++
Sbjct: 508 NAVISAYAHYGEAKNAIK 525



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 179/403 (44%), Gaps = 20/403 (4%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N F+LN +++ Y        A+ LF      N  ++T +M  +   G+   AL LF+ ML
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 121 GNLVWPNEFTFATV--IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           G  V P+  T  TV  +  C++         +H     FG   ++ VC++L+D Y K   
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-LASVI 237
           +  ARRVF  M  ++ V++ ++++  ++     +AL++F     +    P  H   +S++
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGIPATHFTFSSIL 243

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
              A +  L+ G   H +V+RS    N  V ++L+D Y+KC  ++   ++F+ +     V
Sbjct: 244 TVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNV 303

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           +Y  +I   A        L LF EM   G     + +  +L        V  G Q + + 
Sbjct: 304 SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQ 362

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
               G+  +      ++DM  + G LD A     +     +   + W  L++    +G+ 
Sbjct: 363 LVLLGLASEDLLGNALIDMYSKCGMLDAA---KSNFSNRSEKSAISWTALITGYVQNGQH 419

Query: 418 DIAVEASNQL----IESNQQVANAYVTLSNTYALAGEWENVHS 456
           + A++  + +    +  ++   ++ +  S++ A+ G    +HS
Sbjct: 420 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHS 462


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/613 (34%), Positives = 347/613 (56%), Gaps = 37/613 (6%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           +C+T    ++   + K       +H  +LK G+  + +    LI+ YV+  + + AR++F
Sbjct: 102 NCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVF 161

Query: 86  DEMLEPNVVSYTSLM-------------------------------AGYINMGQPQIALL 114
           D+    +VVSYT+L+                               +GY   G  + AL 
Sbjct: 162 DQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALE 221

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           LF++M+   V P+E T  +V+ AC+  A +  G+Q+H+ I+  GF  NL + ++L+D+Y 
Sbjct: 222 LFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYI 281

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           KC +V+ A  +F+ +  ++V+SW ++I  +       EAL +F+E   +S + PN   + 
Sbjct: 282 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNDVTML 340

Query: 235 SVINACASLGRLVSGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           S++ ACA LG +  G+  H  + +   G        ++L+DMYAKCG +  + +VF+ I 
Sbjct: 341 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL 400

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           N S+ ++ +MI G A +G    + D+F+ M    I+P+D+TFVG+L ACSHSG++D G  
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 460

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
              SM   Y I P  +HY C++D+LG +G   EA ++  +++++PDG  ++W +LL A +
Sbjct: 461 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG--VIWCSLLKACK 518

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           ++  V++    +  LI+   +   +YV LSN YA AG W  V  +R+ +   G+ K PGC
Sbjct: 519 MYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGC 578

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           S +EI    + F  G+    R  E+  +L E+E  ++E G+V   T  V  ++E+E +E 
Sbjct: 579 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEWKEG 637

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            +  HSE+LA+AFGLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFH
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 593 HFRNGSCSCGDFW 605
           HFR+G CSC D+W
Sbjct: 698 HFRDGVCSCNDYW 710



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 208/421 (49%), Gaps = 39/421 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNV 93
           L  CK L SL  +H++++K+G  +  + L+ LI   V          A  +F+ + EPN+
Sbjct: 9   LHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNL 68

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + + ++  G+     P  AL L+  M+   + PN +TF  ++K+C+       G+QIH H
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGH 128

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV----------- 202
           +   G+  +L V +SL+ MY +   ++ AR+VFD    R+VVS+T++I            
Sbjct: 129 VLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA 188

Query: 203 --------------------AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
                                +A+     EALE+F+E   ++  RP++  + SV++ACA 
Sbjct: 189 QKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEM-MKTNVRPDESTMVSVVSACAQ 247

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              +  G+  H  +   G   N  + +AL+D+Y KCG V  +  +F  +S   V+++ ++
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL 307

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G     L + +L LF EM+  G  PNDVT + +L AC+H G ++ G   H+    R  
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK 367

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+   + H T ++DM  + G ++ A ++  SI    +     W  ++    +HGR + A 
Sbjct: 368 GVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL---NRSLSSWNAMIFGFAMHGRANAAF 424

Query: 422 E 422
           +
Sbjct: 425 D 425



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 42/310 (13%)

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG---ARRVFDLM 189
           +++  C  L  L   + IH  +   G        S L++        DG   A  VF+ +
Sbjct: 7   SLLHNCKTLQSL---RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              N++ W ++   HA ++    AL ++          PN +    ++ +CA       G
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL-LPNCYTFPFLLKSCAKSKAFREG 122

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT--------- 300
           +  HG V++ G + +  V ++L+ MY + G +  + KVF++ S+  VV+YT         
Sbjct: 123 QQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASK 182

Query: 301 ----------------------SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
                                 +MI G A+ G  + +L+LF EM+   ++P++ T V V+
Sbjct: 183 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 242

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC+ S  ++ G Q + S    +G   + K    ++D+  + G ++ A  L + +     
Sbjct: 243 SACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-- 299

Query: 399 GGPLLWGTLL 408
              + W TL+
Sbjct: 300 -DVISWNTLI 308


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 331/588 (56%), Gaps = 10/588 (1%)

Query: 24  RSSCHTKAHFIQQLQECKH---LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           +++C  +  F   L  C H   +      H  + K G + + +  + L++ Y R    ++
Sbjct: 111 QNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVEL 170

Query: 81  ARQLFDEMLEPNV---VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
           A Q+ D +   +V    SY S++   +  G+ + A+ + ++M+   V  +  T+  V+  
Sbjct: 171 ALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGL 230

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ + DL  G ++H  +   G  ++  V S L+DMYGKC +V  AR VFD +  RNVV W
Sbjct: 231 CAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVW 290

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T+++ A+ QN    E+L +F   + +    PN++  A ++NACA +  L  G + H  V 
Sbjct: 291 TALMTAYLQNGYFEESLNLFTCMDREG-TLPNEYTFAVLLNACAGIAALRHGDLLHARVE 349

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           + G + + +V +AL++MY+K GS++ S  VF  +    ++T+ +MI G + +GLG+ +L 
Sbjct: 350 KLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQ 409

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           +F +M+S    PN VTF+GVL A SH GLV EG  +L+ + R + I P  +HYTC+V +L
Sbjct: 410 VFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALL 469

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R G LDEA    K+ QV  D   + W TLL+A  +H   D+    +  +++ +      
Sbjct: 470 SRAGLLDEAENFMKTTQVKWD--VVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGT 527

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           Y  LSN YA A  W+ V ++R  M+   I KEPG SW++IR+  + F +  +      ++
Sbjct: 528 YTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQI 587

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
              +++L   +K  GYV      V  DVEDE +E  +  HSE+LALA+GL+ IP    IR
Sbjct: 588 YKKVQQLLALIKPLGYVPNIAS-VLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIR 646

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLRMC DCH   KLIS +  R  +VRD NRFHHFR+GSC+C D W
Sbjct: 647 IIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 195/387 (50%), Gaps = 23/387 (5%)

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NL 123
           LN L++ YV+  +  +AR LFD M   NVVS+  LMAGY++ G     L+LF+ M+    
Sbjct: 53  LNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQN 112

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
             PNE+ F T + ACS    +  G Q H  +  FG   +  V S+LV MY +C+ V+ A 
Sbjct: 113 ACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELAL 172

Query: 184 RVFDLMG---CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
           +V D +      ++ S+ S++ A  ++ +G EA+E+ R    +     +      V+  C
Sbjct: 173 QVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAW-DHVTYVGVMGLC 231

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A +  L  G   H  ++R G  F++ V S L+DMY KCG V  +  VF+ + N +VV +T
Sbjct: 232 AQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWT 291

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS------HSGLVDEGIQHL 354
           +++    + G    SL+LF  M   G  PN+ TF  +L+AC+      H  L+   ++ L
Sbjct: 292 ALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKL 351

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
              ++ + I+ +A     +++M  ++G +D +Y +   +        + W  ++     H
Sbjct: 352 G--FKNHVIVRNA-----LINMYSKSGSIDSSYNVFTDMIYRD---IITWNAMICGYSHH 401

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTL 441
           G    A++    ++ S ++  N YVT 
Sbjct: 402 GLGKQALQVFQDMV-SAEECPN-YVTF 426


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 331/567 (58%), Gaps = 16/567 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + K GF       N +I+ Y +      A ++F+ +   NV+S+ +++AGY N   
Sbjct: 26  VHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERN 85

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY--NLVVC 166
            + AL LF++M      P+ +T+++ +KACS       G QIH  +   GF Y     V 
Sbjct: 86  GEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVA 145

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
            +LVD+Y KC  +  AR+VFD +  ++V+SW+++I+ +AQ     EA+++FRE   +SR 
Sbjct: 146 GALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELR-ESRH 204

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
           R +  +L+S+I   A    L  GK  H   ++      ++ VA++++DMY KCG    +D
Sbjct: 205 RMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEAD 264

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F  +   +VV++T MI G  K+G+G  +++LFNEM   GI+P+ VT++ VL ACSHSG
Sbjct: 265 ALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSG 324

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+ EG ++   +     I P  +HY C+VD+LGR GRL EA  L + + + P+ G  +W 
Sbjct: 325 LIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVG--IWQ 382

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           TLLS  R+HG V++  +    L+         YV +SN YA AG W+    +R  +KR G
Sbjct: 383 TLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKG 442

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER-GYVGGKTGLVFVD 524
           + KE G SWVE+  + + FY G+ +     E+  +L+E+E+++KE  GYV         D
Sbjct: 443 LKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHS-INFSLHD 501

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGI------TIRIMKNLRMCRDCHDVFKLISDI 578
           VE+E++ E + +HSE+LA+  GL+ + +G+       IRI KNLR+C DCH   K +S +
Sbjct: 502 VEEESKMESLRVHSEKLAI--GLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKV 559

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++  FVVRD NRFH F NG CSCGD+W
Sbjct: 560 LKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 154/300 (51%), Gaps = 8/300 (2%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++  CS    L  GKQ+H  +E  GF    VV +S++DMY KC  V  A RVF+ +  RN
Sbjct: 10  ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
           V+SW ++I  +     G EAL +FRE   +  + P+ +  +S + AC+       G   H
Sbjct: 70  VISWNAMIAGYTNERNGEEALNLFREMR-EKGEVPDGYTYSSSLKACSCADAAGEGMQIH 128

Query: 254 GVVVRSGCEF--NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
             ++R G  +     VA ALVD+Y KC  +  + KVF+RI   SV++++++I+G A+   
Sbjct: 129 AALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDN 188

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHY 370
            + ++DLF E+     + +      ++   +   L+++G Q H  ++   YG++ +    
Sbjct: 189 LKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLL-EMSVA 247

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
             V+DM  + G   EA  L + +    +   + W  +++    HG  + AVE  N++ E+
Sbjct: 248 NSVLDMYMKCGLTVEADALFREML---ERNVVSWTVMITGYGKHGIGNKAVELFNEMQEN 304



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           +L  ++N C+    L  GK  HGVV + G +   VV ++++DMY+KCG V  + +VFN +
Sbjct: 6   LLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTL 65

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
              +V+++ +MI G      G  +L+LF EM  +G  P+  T+   L ACS +    EG+
Sbjct: 66  PVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGM 125

Query: 352 Q-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           Q H   +   +  +  +     +VD+  +  R+ EA K+   I+   +   + W TL+  
Sbjct: 126 QIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIE---EKSVMSWSTLILG 182

Query: 411 SRLHGRVDIAVEASNQLIESNQQ----VANAYVTLSNTYALAGEWENVHS 456
                 +  A++   +L ES  +    V ++ + +   +AL  + + +H+
Sbjct: 183 YAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHA 232


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/617 (34%), Positives = 331/617 (53%), Gaps = 43/617 (6%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           S H K    Q     KHL     VH+ +L+ G   +++ LN ++        T  + ++F
Sbjct: 9   SAHIKIRLFQGFNSLKHL---KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIF 65

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
            +  EPN+  + +++ G +     Q ++ ++  M    + P+ FTF  ++KAC+ L D  
Sbjct: 66  HQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSK 125

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            G ++H  +   G + +  V +SLV +YGKC  +D A +VFD +  +NV +WT+II  + 
Sbjct: 126 LGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYI 185

Query: 206 QNAQGHEALEMFREF--------------------NYQSRD-----------------RP 228
              +  EA++MFR                       Y S                   RP
Sbjct: 186 GVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRP 245

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + +  V+ ACA LG L  G  A  ++ R+    N V+ +AL+DMYAKCG ++ + +VF
Sbjct: 246 DCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF 305

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +    +V + + I G A  G  + +  LF +M   GI+P+  TFVG+L AC+H+GLVD
Sbjct: 306 RGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVD 365

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG Q+ +SM R + + P+ +HY C+VD+LGR G LDEA++L KS+ ++ +   ++WG LL
Sbjct: 366 EGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANA--IVWGALL 423

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              RLH    +      QLI      +  YV LSN Y+ + +WE+   +RS M   GI K
Sbjct: 424 GGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKK 483

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG SW+E+    + F  G+       ++ + L EL + +K  GYV   T  V  D+E+E
Sbjct: 484 VPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYV-PTTDYVLFDIEEE 542

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +G HSE+LA+AFGLIS      IR++KNLR+C DCH+  K IS    R+ +VRD 
Sbjct: 543 EKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDN 602

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F +GSCSC D+W
Sbjct: 603 NRFHCFNDGSCSCKDYW 619


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 315/553 (56%), Gaps = 10/553 (1%)

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE----PNVVSYTSLMAGYINMGQPQIAL 113
            L+N      LI  +   ++   AR++F++  E    P  V + ++  GY   G P+ AL
Sbjct: 105 LLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESV-WVAMGIGYSRNGYPKEAL 163

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
           LL+ +M+        F F+  +KACS L DL TG+ +H  +       + VV ++L+ +Y
Sbjct: 164 LLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLY 223

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            +    D A RVFD M  RNVVSW S+I    +     EA+E FR    +     +   L
Sbjct: 224 SEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGF-SWVTL 282

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            +++  CA +  L SGK  H V+V+S  + +  V ++LVDMYAKCG+++Y  +VFN +  
Sbjct: 283 TTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQG 342

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
             + ++ ++I G A  G    +++ F EMI  G  P+ +TF+ +L  CSH+GL D+G + 
Sbjct: 343 KDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRL 402

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            + M   YGI P  +HY C+VD+LGR GR+ EA ++ K++   P G   +WG+LL++ RL
Sbjct: 403 FEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGS--IWGSLLNSCRL 460

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           HG V +A   + +L E     A  YV LSN YA AG WE+V  +R  M++ G+ KE GCS
Sbjct: 461 HGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCS 520

Query: 474 WVEIRDQTYAFYAGNA-LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           W++I+ + + F AG +  F    E   + + L   M+E GYV   TG+V  DV +E R  
Sbjct: 521 WLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYV-PDTGVVLHDVSEEMRAM 579

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            V  HSERLA  F LI+   G+ IRI KNLR+C DCH   K +S +  R  V+RD NRFH
Sbjct: 580 WVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFH 639

Query: 593 HFRNGSCSCGDFW 605
           HF++G CSC D+W
Sbjct: 640 HFKDGVCSCKDYW 652



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L  L +   VH+++LK+    +    N L+  Y        A ++FD M 
Sbjct: 181 FSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMP 240

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             NVVS+ SL+AG +       A+  F+ M G  +  +  T  T++  C+ +  L +GK+
Sbjct: 241 HRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKE 300

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  I     + +  V +SLVDMY KC  +D  RRVF+ M  +++ SW ++I  +A N +
Sbjct: 301 IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGR 360

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
             EA+E F+E    S   P+     ++++ C+  G
Sbjct: 361 MTEAMESFQEM-ICSGFSPDGITFIALLSGCSHAG 394


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 332/572 (58%), Gaps = 9/572 (1%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE-PNVVSYTS 98
           C  +  +  +HS  + SGF S     N L+  Y +      A+++F  M    + VS+ S
Sbjct: 151 CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++  Y    +   AL LFQ+M+   +  + FT A+V+ A + L DL  G Q H  +   G
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 159 FQYNLVVCSSLVDMYGKCND-VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE-ALEM 216
           F  N  V S L+D+Y KC   +   R+VF+ +   ++V W +++  ++QN +  E ALE 
Sbjct: 271 FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALEC 330

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMY 275
           FR+       RPN      VI+AC++L     GK  H + ++S    N + V +AL+ MY
Sbjct: 331 FRQMQGIGY-RPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMY 389

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           +KCG++  + ++F+R++  + V+  SMI G A++G+   SL LF  M+ R I P  +TF+
Sbjct: 390 SKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFI 449

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            VL AC+H+G V+EG  + + M  K+ I P+A+HY+C++D+LGR G+L EA  L   +  
Sbjct: 450 SVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPF 509

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           +P  G + W +LL A R HG +++AV+A+NQ+++     A  YV LSN YA AG WE V 
Sbjct: 510 NP--GSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVA 567

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
           ++R  M+  G+ K+PGCSW+E++ + + F A ++      E+   L E+  KMK  GYV 
Sbjct: 568 TVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVP 627

Query: 516 G-KTGLVFVDVEDEAREEI-VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
             +  LV  D      +EI +G HSE+LA+AFGLIS   G  + ++KNLR+C DCH+  K
Sbjct: 628 DVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIK 687

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS I  R+  VRD +RFH F+ G CSCGD+W
Sbjct: 688 FISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 193/369 (52%), Gaps = 14/369 (3%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           S +   HFI    +C  L        +I       N F+ N +I  Y +  +  +A QLF
Sbjct: 42  STYFSNHFILLYSKCGRLAWARKAFQDISDP----NVFSFNAIIAAYAKESRPLIAHQLF 97

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D++ EP++VSY +L++ Y + G+   AL LF  M    +  + FT + VI AC     LI
Sbjct: 98  DQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLI 157

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAH 204
              Q+H+   + GF   + V ++L+  YGK  D+D A+RVF  M G R+ VSW S+IVA+
Sbjct: 158 G--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAY 215

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            Q+ +G +AL +F+E   +  +  +   LASV+ A   L  L  G   HG ++++G   N
Sbjct: 216 GQHQEGSKALGLFQEMVRRGLN-VDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQN 274

Query: 265 DVVASALVDMYAKCGSVNYSD--KVFNRISNPSVVTYTSMIVGAAK-YGLGRFSLDLFNE 321
             V S L+D+Y+KCG    SD  KVF  I+ P +V + +M+ G ++       +L+ F +
Sbjct: 275 SHVGSGLIDLYSKCGG-GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQ 333

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY-TCVVDMLGRT 380
           M   G +PND +FV V+ ACS+     +G Q + S+  K  I  +       ++ M  + 
Sbjct: 334 MQGIGYRPNDCSFVCVISACSNLSSPSQGKQ-IHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 381 GRLDEAYKL 389
           G L +A +L
Sbjct: 393 GNLQDARRL 401


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/615 (36%), Positives = 331/615 (53%), Gaps = 53/615 (8%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLI--NCYVRLKKTQVARQLFDEMLEPNVVSYT 97
           CK +  L  +H++++K+  + +      L+  +     +    AR++F  M  PN  SY 
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           +L+        P  ALL+F +M+ +  V PN FTF +V KAC     L  G+Q+H     
Sbjct: 81  TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVK 140

Query: 157 FGFQYNLVVCSSLVDMYGKCN--------------------------DVDG--------- 181
           FG   +  V S++V MY  C                            VDG         
Sbjct: 141 FGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMI 200

Query: 182 -----------ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
                      AR +FD M  R+VVSW  +I  +AQ+    EA+E+FRE    +   PN 
Sbjct: 201 DGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ-MAEVPPNY 259

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             L SV+ A + LG L  GK  H   VR+    +DV+ SAL+DMYAKCGS+  + +VF  
Sbjct: 260 VTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEG 319

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +VVT++++I G A +G  + +LD F +M   G+ P+DVT++G+L ACSH+GLV+EG
Sbjct: 320 LPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEG 379

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
               D M R  G+ P  +HY C+VD+LGR G L+E+ +L  ++ + PD   ++W  LL A
Sbjct: 380 RWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD--VIWKALLGA 437

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
            ++HG V++    +  L+E     + +YV LSN YA  G WE V  +R  MK   + K+P
Sbjct: 438 CKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDP 497

Query: 471 GCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAR 530
           GCSW+E+    + F   +    +  ++ S+L+E+ R +   GY    T  V  ++++E +
Sbjct: 498 GCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQ-VLTNMDEEDK 556

Query: 531 EEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNR 590
           E  +  HSE++A+AFGLIS      +RI KNLR+C DCH   KLIS I +R  +VRD  R
Sbjct: 557 ESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKR 616

Query: 591 FHHFRNGSCSCGDFW 605
           FHHF NGSCSC D+W
Sbjct: 617 FHHFVNGSCSCMDYW 631



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 143/342 (41%), Gaps = 62/342 (18%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCSSL-VDMYGKCNDVDG 181
           +WP    F      C  + DL   KQ+H   I+T   +  L     L         D+D 
Sbjct: 12  LWPPSSFFP-----CKTMQDL---KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDY 63

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           AR++F  M   N  S+ ++I A +++    +AL +F E        PN     SV  AC 
Sbjct: 64  ARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG 123

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR----------- 290
              RL  G+  HG+ V+ G + ++ V S +V MY  CG +  + ++F R           
Sbjct: 124 RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIR 183

Query: 291 -----------------------------------ISNPSVVTYTSMIVGAAKYGLGRFS 315
                                              +   SVV++  MI G A+ G  + +
Sbjct: 184 DKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEA 243

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVV 374
           +++F EM    + PN VT V VL A S  G ++ G   HL ++    G+  D    + ++
Sbjct: 244 VEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV--DDVLGSALI 301

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           DM  + G +++A ++ + +   P    + W T+++   +HGR
Sbjct: 302 DMYAKCGSIEKALQVFEGL---PKRNVVTWSTIIAGLAMHGR 340


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 332/572 (58%), Gaps = 9/572 (1%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE-PNVVSYTS 98
           C  +  +  +HS  + SGF S     N L+  Y +      A+++F  M    + VS+ S
Sbjct: 151 CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++  Y    +   AL LFQ+M+   +  + FT A+V+ A + L DL  G Q H  +   G
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 159 FQYNLVVCSSLVDMYGKCND-VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE-ALEM 216
           F  N  V S L+D+Y KC   +   R+VF+ +   ++V W +++  ++QN +  E ALE 
Sbjct: 271 FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALEC 330

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMY 275
           FR+       RPN      VI+AC++L     GK  H + ++S    N + V +AL+ MY
Sbjct: 331 FRQMQGIGY-RPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMY 389

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           +KCG++  + ++F+R++  + V+  SMI G A++G+   SL LF  M+ R I P  +TF+
Sbjct: 390 SKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFI 449

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            VL AC+H+G V+EG  + + M  K+ I P+A+HY+C++D+LGR G+L EA  L   +  
Sbjct: 450 SVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPF 509

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           +P  G + W +LL A R HG +++AV+A+NQ+++     A  YV LSN YA AG WE V 
Sbjct: 510 NP--GSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVA 567

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
           ++R  M+  G+ K+PGCSW+E++ + + F A ++      E+   L E+  KMK  GYV 
Sbjct: 568 TVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVP 627

Query: 516 G-KTGLVFVDVEDEAREEI-VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
             +  LV  D      +EI +G HSE+LA+AFGLIS   G  + ++KNLR+C DCH+  K
Sbjct: 628 DVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIK 687

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IS I  R+  VRD +RFH F+ G CSCGD+W
Sbjct: 688 FISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 193/369 (52%), Gaps = 14/369 (3%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           S +   HFI    +C  L        +I       N F+ N +I  Y +  +  +A QLF
Sbjct: 42  STYFSNHFILLYSKCGRLAWARKAFQDISDP----NVFSFNAIIAAYAKESRPLIAHQLF 97

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D++ EP++VSY +L++ Y + G+   AL LF  M    +  + FT + VI AC     LI
Sbjct: 98  DQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLI 157

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAH 204
              Q+H+   + GF   + V ++L+  YGK  D+D A+RVF  M G R+ VSW S+IVA+
Sbjct: 158 --GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAY 215

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            Q+ +G +AL +F+E   +  +  +   LASV+ A   L  L  G   HG ++++G   N
Sbjct: 216 GQHQEGSKALGLFQEMVRRGLN-VDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQN 274

Query: 265 DVVASALVDMYAKCGSVNYSD--KVFNRISNPSVVTYTSMIVGAAK-YGLGRFSLDLFNE 321
             V S L+D+Y+KCG    SD  KVF  I+ P +V + +M+ G ++       +L+ F +
Sbjct: 275 SHVGSGLIDLYSKCGG-GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQ 333

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY-TCVVDMLGRT 380
           M   G +PND +FV V+ ACS+     +G Q + S+  K  I  +       ++ M  + 
Sbjct: 334 MQGIGYRPNDCSFVCVISACSNLSSPSQGKQ-IHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 381 GRLDEAYKL 389
           G L +A +L
Sbjct: 393 GNLQDARRL 401


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 329/610 (53%), Gaps = 42/610 (6%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLE 90
           ++ L+ C  L     VH++I       +++ L  L+     L    +    R LF ++  
Sbjct: 12  VRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHT 71

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           PN  ++T+L+  Y   G    AL  +  M    V P  FTF+ +  AC+ +     G Q+
Sbjct: 72  PNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQL 131

Query: 151 HTHIETFG-FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH----- 204
           H      G F  +L V ++++DMY KC  +  AR VFD M  R+V+SWT +IVA+     
Sbjct: 132 HAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGD 191

Query: 205 --------------------------AQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
                                     AQNA   +ALE+FR    +  +  ++  L  VI+
Sbjct: 192 MRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVE-IDEVTLVGVIS 250

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           ACA LG          +   SG    D  +V SAL+DMY+KCG+V  +  VF  +   +V
Sbjct: 251 ACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNV 310

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
            +Y+SMIVG A +G  R ++ LF +M+  G+KPN VTFVGVL ACSH+GLVD+G Q   S
Sbjct: 311 FSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFAS 370

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M + YG+ P A+ Y C+ D+L R G L++A +L +++ ++ DG   +WG LL AS +HG 
Sbjct: 371 MEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGA--VWGALLGASHVHGN 428

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
            D+A  AS +L E        Y+ LSNTYA AG W++V  +R  ++   + K PG SWVE
Sbjct: 429 PDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVE 488

Query: 477 IRD-QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
            ++   + F AG+    + +E+   L +L  ++K  GY    + L +  + D  +  ++ 
Sbjct: 489 AKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPY-GINDREKRLLLM 547

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595
            HSE+LALAFGL+S   G TI+IMKNLR+C DCH V    S +  R  VVRD  RFHHF 
Sbjct: 548 AHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFL 607

Query: 596 NGSCSCGDFW 605
           NG+CSC +FW
Sbjct: 608 NGACSCSNFW 617


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 341/570 (59%), Gaps = 11/570 (1%)

Query: 43  LISLASVHSEILKSGF-LSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEP-NVVSYT 97
           +  L  +H+  ++ G  +S+     HLI   V L        A ++F ++ +P NV  + 
Sbjct: 30  ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89

Query: 98  SLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           +L+ GY  +G    A  L+++M +  LV P+  T+  +IKA + +AD+  G+ IH+ +  
Sbjct: 90  TLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 149

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF   + V +SL+ +Y  C DV  A +VFD M  +++V+W S+I   A+N +  EAL +
Sbjct: 150 SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALAL 209

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           + E N +   +P+   + S+++ACA +G L  GK  H  +++ G   N   ++ L+D+YA
Sbjct: 210 YTEMNSKG-IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFV 335
           +CG V  +  +F+ + + + V++TS+IVG A  G G+ +++LF  M S  G+ P ++TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           G+L+ACSH G+V EG ++   M  +Y I P  +H+ C+VD+L R G++ +AY+  KS+ +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
            P+   ++W TLL A  +HG  D+A  A  Q+++     +  YV LSN YA    W +V 
Sbjct: 389 QPN--VVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQ 446

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R +M R G+ K PG S VE+ ++ + F  G+    +   + + L+E+  +++  GYV 
Sbjct: 447 KIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVP 506

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
            +   V+VDVE+E +E  V  HSE++A+AF LIS P+   I ++KNLR+C DCH   KL+
Sbjct: 507 -QISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLV 565

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S +  R+ VVRD +RFHHF+NGSCSC D+W
Sbjct: 566 SKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 156/307 (50%), Gaps = 9/307 (2%)

Query: 12  TLAASSLTRQNKRS-----SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLN 66
           +++A SL R+ + S       HT    I+ +     +    ++HS +++SGF S  +  N
Sbjct: 101 SISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQN 160

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L++ Y        A ++FD+M E ++V++ S++ G+   G+P+ AL L+ +M    + P
Sbjct: 161 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 220

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + FT  +++ AC+ +  L  GK++H ++   G   NL   + L+D+Y +C  V+ A+ +F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  +N VSWTS+IV  A N  G EA+E+F+         P +     ++ AC+  G +
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340

Query: 247 VSGKVAHGVVVRSGCEFNDVVA--SALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
             G   +   +R   +    +     +VD+ A+ G V  + +    +   P+VV + +++
Sbjct: 341 KEG-FEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399

Query: 304 VGAAKYG 310
                +G
Sbjct: 400 GACTVHG 406


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/551 (37%), Positives = 324/551 (58%), Gaps = 23/551 (4%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +   + ++I  Y    +   AR LFDEM + NVV++T++++GY   G+  +A  LF+ M 
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP 237

Query: 121 --GNLVWPN---EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
               + W      +T +  ++  S L D +  K +             VVC+ ++  +G 
Sbjct: 238 ERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPV-------------VVCNEMIMGFGL 284

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
             +VD ARRVF  M  R+  +W+++I  + +     EAL +FR    +     N   L S
Sbjct: 285 NGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLAL-NFPSLIS 343

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V++ C SL  L  GK  H  +VRS  + +  VAS L+ MY KCG++  + +VFNR     
Sbjct: 344 VLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKD 403

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           VV + SMI G +++GLG  +L++F++M S G+ P+DVTF+GVL ACS+SG V EG++  +
Sbjct: 404 VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFE 463

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +M  KY + P  +HY C+VD+LGR  +++EA KL + + ++PD   ++WG LL A R H 
Sbjct: 464 TMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDA--IVWGALLGACRTHM 521

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
           ++D+A  A  +L +   + A  YV LSN YA  G W +V  LR ++K   + K PGCSW+
Sbjct: 522 KLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWI 581

Query: 476 EIRDQTYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           E+  + + F  G++        ++ +L +L   ++E GY    +  V  DV++E +   +
Sbjct: 582 EVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGS-FVLHDVDEEEKTHSL 640

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
           G HSE+LA+A+GL+ +P+G+ IR+MKNLR+C DCH   KLI+ +  R+ ++RD NRFHHF
Sbjct: 641 GYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHF 700

Query: 595 RNGSCSCGDFW 605
           ++G CSC D+W
Sbjct: 701 KDGHCSCKDYW 711



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 63/345 (18%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAGYINMGQPQIALLLF 116
           L  T + ++ I CY R  +   AR++FDE   P+  V S+ +++A Y    QP+ ALLLF
Sbjct: 19  LQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLF 78

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           +KM                                        Q N V  + L+  + K 
Sbjct: 79  EKMP---------------------------------------QRNTVSWNGLISGHIKN 99

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             +  ARRVFD M  RNVVSWTS++  + +N    EA  +F    ++           +V
Sbjct: 100 GMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHK-----------NV 148

Query: 237 INACASLGRLV-SGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNP 294
           ++    LG L+  G+V     +       DVVA + ++  Y + G ++ +  +F+ +   
Sbjct: 149 VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR 208

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           +VVT+T+M+ G A+ G    +  LF  M  R    N+V++  +L   +HSG + E     
Sbjct: 209 NVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMREASSLF 264

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           D+M  K  ++ +      ++   G  G +D+A ++ K ++   +G
Sbjct: 265 DAMPVKPVVVCNE-----MIMGFGLNGEVDKARRVFKGMKERDNG 304



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 159/358 (44%), Gaps = 27/358 (7%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT + N LI+ +++      AR++FD M + NVVS+TS++ GY+  G    A  LF  M 
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM- 143

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCND 178
                P++     V+    ML  L+   ++    + F    + ++V  ++++  Y +   
Sbjct: 144 -----PHK----NVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGR 194

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +D AR +FD M  RNVV+WT+++  +A+N +   A ++F E   +  +     ML     
Sbjct: 195 LDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLF-EVMPERNEVSWTAML----- 248

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
               LG   SG++     +        VV  + ++  +   G V+ + +VF  +      
Sbjct: 249 ----LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNG 304

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           T+++MI    + G    +L LF  M   G+  N  + + VL  C     +D G Q    +
Sbjct: 305 TWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQL 364

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            R      D    + ++ M  + G L  A ++       P    ++W ++++    HG
Sbjct: 365 VRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRF---PLKDVVMWNSMITGYSQHG 418



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 12/202 (5%)

Query: 11  FTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLN 66
           + L A  L R+ +R          I  L  C  L SL     VH+++++S F  + +  +
Sbjct: 318 YELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVAS 377

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            LI  YV+      A+Q+F+     +VV + S++ GY   G  + AL +F  M  + V P
Sbjct: 378 VLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPP 437

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC----SSLVDMYGKCNDVDGA 182
           ++ TF  V+ ACS    +  G ++    ET   +Y +       + LVD+ G+ + V+ A
Sbjct: 438 DDVTFIGVLSACSYSGKVKEGLEL---FETMKCKYQVEPGIEHYACLVDLLGRADQVNEA 494

Query: 183 RRVFDLMGCR-NVVSWTSIIVA 203
            ++ + M    + + W +++ A
Sbjct: 495 MKLVEKMPMEPDAIVWGALLGA 516



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 114/253 (45%), Gaps = 35/253 (13%)

Query: 173 YGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           Y +   +D AR+VFD   +  R V SW +++ A+ +  Q  EAL +F +        P +
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM-------PQR 84

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEF------NDVVASALVDMYAKCGSVNYS 284
           + +        S   L+SG + +G++  +   F      N V  +++V  Y + G V  +
Sbjct: 85  NTV--------SWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEA 136

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
           +++F  + + +VV++T M+ G  + G    +  LF+ M  + +    V    ++      
Sbjct: 137 ERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDV----VAVTNMIGGYCEE 192

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G +DE     D M ++  +      +T +V    R G++D A KL    +V P+   + W
Sbjct: 193 GRLDEARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKL---FEVMPERNEVSW 244

Query: 405 GTLLSASRLHGRV 417
             +L      GR+
Sbjct: 245 TAMLLGYTHSGRM 257


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/643 (34%), Positives = 337/643 (52%), Gaps = 78/643 (12%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-------- 88
            + C  L    ++H+    SG   + F  + L++ Y+RL  T  AR LFD M        
Sbjct: 27  FKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVV 86

Query: 89  ------------------------------LEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
                                         +EPNV+++  L++G    G+ + A++    
Sbjct: 87  GWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALAT 146

Query: 119 MLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           M G  L+ P+    +  + A   +  +  G+Q+H +    G + +  V ++L+DMYGKC 
Sbjct: 147 MHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCG 206

Query: 178 DVDGARRVFD------LMGCR-----------------------------NVVSWTSIIV 202
                 RVFD      +  C                              NVVSWTSI+ 
Sbjct: 207 QAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVA 266

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
              QN +  EA+E FRE   Q  + PN   +  V+ A A++  L+ G+ AH   +R G  
Sbjct: 267 CCVQNGKDLEAVEFFREMQAQGTE-PNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFL 325

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            +  V+SALVDMYAKCG V  +  +F+ + + +VV++ +MI G A YG    ++ +F+ M
Sbjct: 326 HDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSM 385

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           +    KP+ VTF  +L AC+ +GL +EG  +   M+ +YG+ P  +HY C+V +LGR G+
Sbjct: 386 LKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGK 445

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           LDEAY L   +  +PD    +WG+LL + R+HG VD+A  A+ +L     + A  YV LS
Sbjct: 446 LDEAYDLISDMPFEPDA--YIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLS 503

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N YA    W+ V+ +R  MK  G+ KE GCSW+EI+++ +   AG+      + ++  + 
Sbjct: 504 NIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKIN 563

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
           +L  +M++ G+V   T  V  DVE++ +++I+ +HSE+LA+A GLIS   G T+R++KNL
Sbjct: 564 QLNIQMRKLGFV-PSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNL 622

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH+  K IS    R+  VRD NRFHHF  G CSCGDFW
Sbjct: 623 RICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 42/296 (14%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+     T  K+C  L      + +H   E  G   +  V SSL+  Y +      AR +
Sbjct: 18  PDPHLLPTAFKSCPTLP---LARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 186 FDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREF----------------------N 221
           FD M    R VV W++++ AHA       A  +  E                       +
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 222 YQSRD--------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            ++RD              RP+   ++  ++A   +G +  G+  HG  V++GC  +  V
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACV 194

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +AL+DMY KCG      +VF+  S+  V +  ++I G ++      +L LF E + RG+
Sbjct: 195 VTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGV 254

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           + N V++  ++  C  +G   E ++    M +  G  P++    CV+        L
Sbjct: 255 ELNVVSWTSIVACCVQNGKDLEAVEFFREM-QAQGTEPNSVTIPCVLPAFANVAAL 309


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 307/561 (54%), Gaps = 43/561 (7%)

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           QV   +    L+P  +  + ++A Y + G    ++ +F  +       + FTF  V+K+ 
Sbjct: 91  QVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGI------GDYFTFPFVLKSS 144

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--------- 189
             L  +  GK +H  I   G Q++L V +SL+ +YGKC +++ A +VFD M         
Sbjct: 145 VELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWN 204

Query: 190 ---------GC-------------RNVVSWTSIIVAHAQNAQGHEALEMFREF-NYQSRD 226
                    GC             RN+VSWT++I  ++Q+    +AL +F E     S  
Sbjct: 205 ALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGV 264

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RPN   + SV+ ACA L  L  G+  H +  R G   N  V  AL  MYAKCGS+  +  
Sbjct: 265 RPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARN 324

Query: 287 VFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            F++++    +++ + +MI   A YG G  ++  F EMI  GI+P+D+TF G+L  CSHS
Sbjct: 325 CFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 384

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLVD G+++ + M   Y I P  +HY CV D+LGR GRL EA KL   + +    GP +W
Sbjct: 385 GLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMP--AGPSIW 442

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G+LL+A R H  +++A  A+ +L     +    YV LSN YA AG W+ V  LR+ +K  
Sbjct: 443 GSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQ 502

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           G  K PGCSW+EI  + + F  G+    +G E+   L  L  KMK  GY    T  V  D
Sbjct: 503 GTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFP-DTSYVLHD 561

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           + +E +E  +  HSE+LA+AFG+++ P    +R+ KNLR+C DCH     IS+I  R+ +
Sbjct: 562 ISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVI 621

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD+NRFHHF+ G CSCGD+W
Sbjct: 622 VRDINRFHHFKGGCCSCGDYW 642



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 36/231 (15%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  IL+ G   + +    LI  Y +  +   A ++FD M   +V S+ +L+AGY   G 
Sbjct: 156 VHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGC 215

Query: 109 PQIALLLFQKM-LGNLV-W-------------------------------PNEFTFATVI 135
              AL +F++M   N+V W                               PN  T  +V+
Sbjct: 216 IDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVL 275

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRN 193
            AC+ L+ L  G+QIH      G   N  V  +L  MY KC  +  AR  FD +    +N
Sbjct: 276 PACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKN 335

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +++W ++I A+A    G +A+  FRE   Q+  +P+      +++ C+  G
Sbjct: 336 LIAWNTMITAYASYGHGLQAVSTFREM-IQAGIQPDDITFTGLLSGCSHSG 385


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/540 (36%), Positives = 327/540 (60%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y      + A+++FDE+   +VVS+ ++++GY + G  + AL LF++M+   V P+
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPD 234

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+    +  G+Q+H+ I+  G   NL + ++L+D+Y KC +V+ A  +F 
Sbjct: 235 ESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQ 294

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  +       EAL +F+E   +S + PN   + S++ ACA LG + 
Sbjct: 295 GLSNKDVISWNTMIGGYTHLNLYKEALLLFQEM-LRSGENPNDVTMLSILPACAQLGAID 353

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMYAKCG +  + +VFN + + ++    +MI G
Sbjct: 354 FGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFG 413

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    + D+F+ M   GI+P+D+TFVG+L ACSHSG++D G +   SM + Y I P
Sbjct: 414 FAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITP 473

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG  G   EA ++  ++ ++PDG  ++W +LL A ++HG V++    + 
Sbjct: 474 KLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDG--VIWCSLLKACKMHGNVELGESFAQ 531

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +LI+   +   +YV LSN YA AG W  V ++R+ +   G+ K PGCS +EI    + F 
Sbjct: 532 KLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFI 591

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    R  E+  +L E+E  ++E G+V   T  V  ++E+E ++  +  HSE+LA+AF
Sbjct: 592 IGDKFHPRNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEFKQGALRHHSEKLAIAF 650

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  RFHHFR+G CSC D+W
Sbjct: 651 GLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 202/393 (51%), Gaps = 36/393 (9%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV---RLKKTQVARQLFDEMLEPNV 93
           L  CK L SL  +H++++K+G  +  + L+ L+   +          A  +F+ + EPN+
Sbjct: 9   LHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNL 68

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           + + ++  G+     P  A+ L+  M+   + PN +TF  ++K+C+ L     G+QIH H
Sbjct: 69  LIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGH 128

Query: 154 IETFGFQYNLVVCSSLVDMY---GKCND----------------------------VDGA 182
           +   G++ +L V +SL+ MY   G+  D                            ++ A
Sbjct: 129 VLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESA 188

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +++FD +  ++VVSW +II  +A      EAL++F+E   ++  +P++  + +V++ACA 
Sbjct: 189 QKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEM-MKTNVKPDESTMVTVVSACAQ 247

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
            G +  G+  H  +   G   N  + +AL+D+Y+KCG V  +  +F  +SN  V+++ +M
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTM 307

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G     L + +L LF EM+  G  PNDVT + +L AC+  G +D G   H+    R  
Sbjct: 308 IGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIK 367

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           G+   +   T ++DM  + G ++ A+++  S+ 
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMH 400


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/587 (34%), Positives = 332/587 (56%), Gaps = 34/587 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++K GF S     + L++ Y ++     A+++F  + + N V Y +LM G +  G 
Sbjct: 158 IHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGM 217

Query: 109 PQIALLLFQKMLGNLV-WP-----------------------------NEFTFATVIKAC 138
            + AL LF+ M  + V W                              +++ F +V+ AC
Sbjct: 218 IEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPAC 277

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
             L  +  G+QIH  I     Q ++ V S+L+DMY KC  +  A+ VFD M  +NVVSWT
Sbjct: 278 GGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWT 337

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           +++V + Q  +  EA+++F +      D P+ + L   I+ACA++  L  G   HG  + 
Sbjct: 338 AMVVGYGQTGRAGEAVKIFLDMQRSGID-PDHYTLGQAISACANISSLEEGSQFHGKAIT 396

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           +G      V+++LV +Y KCG ++ S ++FN ++    V++T+M+   A++G    ++ L
Sbjct: 397 AGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQL 456

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F++M+  G+KP+ VT  GV+ ACS +GLV++G ++ + M  +YGI+P   HY+C++D+  
Sbjct: 457 FDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFS 516

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R+GR++EA      +   PD   + W TLLSA R  G ++I   A+  LIE +      Y
Sbjct: 517 RSGRIEEAMGFINGMPFRPDA--IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 574

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
             LS+ YA  G+W+ V  LR  MK   + KEPG SW++ + + ++F A +       ++ 
Sbjct: 575 TLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIY 634

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           + L EL +K+ + GY    T  V  DVE+  + +++  HSERLA+AFGLI +P G+ IR+
Sbjct: 635 AKLEELYQKIIDNGY-KPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRV 693

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KNLR+C DCH+  K IS +  R+ +VRD  RFH F++G+CSCGDFW
Sbjct: 694 GKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 216/467 (46%), Gaps = 78/467 (16%)

Query: 32  HFIQQLQECKHLIS---LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           ++  Q+++C  L +   +  +H  I+++     TF  N++++ Y  ++ +  AR++FD +
Sbjct: 5   YYSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGI 64

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKM----------------LGNLVWP------ 126
            +PN+ S+ +L+  Y   G        F+K+                L  LV        
Sbjct: 65  PQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 124

Query: 127 ----------NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
                        T  T++K  S    +  GKQIH  +   GF+  L+V S L+DMY K 
Sbjct: 125 TMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV 184

Query: 177 NDVDGARRVF----------------DLMGC--------------RNVVSWTSIIVAHAQ 206
             +  A++VF                 L+ C              ++ VSW+++I   AQ
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQ 244

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    EA+E FRE   +   + +Q+   SV+ AC  LG +  G+  H  ++R+  + +  
Sbjct: 245 NGMEKEAIECFREMKIEGL-KMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIY 303

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V SAL+DMY KC  ++Y+  VF+R+   +VV++T+M+VG  + G    ++ +F +M   G
Sbjct: 304 VGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSG 363

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGR 382
           I P+  T    + AC++   ++EG     S +    I     HY  V    V + G+ G 
Sbjct: 364 IDPDHYTLGQAISACANISSLEEG-----SQFHGKAITAGLIHYITVSNSLVTLYGKCGD 418

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
           +D++ +L   + V  +   + W  ++SA    GR   A++  +++++
Sbjct: 419 IDDSTRLFNEMNVRDE---VSWTAMVSAYAQFGRAVEAIQLFDKMVQ 462



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 196/488 (40%), Gaps = 112/488 (22%)

Query: 96  YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           Y++ +   I +G  +   ++   ++  L  P  F    ++ A +++   I  +++   I 
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
               Q NL   ++L+  Y K   +    R F+ +  R+ V+W  +I  ++ +     A++
Sbjct: 66  ----QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVK 121

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
            +            +  L +++   +S G +  GK  HG V++ G E   +V S L+DMY
Sbjct: 122 AYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMY 181

Query: 276 AKCGSVNYSDKVFNRISNPSVVTY------------------------------TSMIVG 305
           +K G ++ + KVF  + + + V Y                              ++MI G
Sbjct: 182 SKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKG 241

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ------------- 352
            A+ G+ + +++ F EM   G+K +   F  VL AC   G +++G Q             
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDH 301

Query: 353 -----HLDSMYRKYGIIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSIQ- 394
                 L  MY K   +  AK             +T +V   G+TGR  EA K+   +Q 
Sbjct: 302 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQR 361

Query: 395 --VDPDGGPLLWGTLLSA----------SRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
             +DPD   L  G  +SA          S+ HG+   A+ A   LI         Y+T+S
Sbjct: 362 SGIDPDHYTL--GQAISACANISSLEEGSQFHGK---AITAG--LIH--------YITVS 406

Query: 443 NT----YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT--YAFYAGNALFERGSE 496
           N+    Y   G+ ++   L +EM               +RD+    A  +  A F R  E
Sbjct: 407 NSLVTLYGKCGDIDDSTRLFNEM--------------NVRDEVSWTAMVSAYAQFGRAVE 452

Query: 497 VLSLLREL 504
            + L  ++
Sbjct: 453 AIQLFDKM 460


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 332/576 (57%), Gaps = 11/576 (1%)

Query: 35  QQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           Q+LQ C   K L+   S H   +  G +++T T N LIN Y +  +   AR +FD M   
Sbjct: 62  QRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVR 121

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           ++VS+ +++AGY + G+   AL LF +M       +EFT ++ I AC+    +   KQ+H
Sbjct: 122 SIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLH 181

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           T         N  V ++++D+Y KCN +  A  VF+ M  R +V+W+S+   + QN    
Sbjct: 182 TIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHE 241

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL +FR    +  +   +  L+++++ACASL   + G   H V+++ G   N  VA++L
Sbjct: 242 EALHLFRCAQREGVE-LTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASL 300

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           VD+YA+CG +  +  +F  + + +VV + +MI   +++     ++ LF +M   GI PN+
Sbjct: 301 VDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNE 360

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VT++ VL  CSH+GLV++G  +   +     + P+  HY+C+VD+LGR+G+ DEA++L  
Sbjct: 361 VTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLN 420

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            +  +P     +WG+LL + R +  + +A  A+ QL +        +V LSN YA +G W
Sbjct: 421 KMPFEPTAS--MWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNW 478

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           ENV   R  +K +G  KE G SW+E + + + F  G     R +++ + L E+  +M++ 
Sbjct: 479 ENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRK- 537

Query: 512 GYVGGKTGLV--FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
                +T +     DV  E +EE++  HSE+LAL+FGLIS+P  I I I KNLR+C DCH
Sbjct: 538 --FARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCH 595

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K+ + I ER  +VRD NRFHHF++GSCSCGDFW
Sbjct: 596 SFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/601 (35%), Positives = 330/601 (54%), Gaps = 39/601 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L  C      + +H+ +++ G  S+      L   Y    +   +  L     +P  + Y
Sbjct: 31  LAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFY 90

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           TS +  + + G     L L   ML   + P   T +  + AC  L+    G+ +H +   
Sbjct: 91  TSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLS---LGRALHAYAFK 147

Query: 157 FGFQYNLVVCSSLVDMY-------------------------------GKCNDVDGARRV 185
                +  V ++L+ MY                                    +D ARR+
Sbjct: 148 LALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRL 207

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD +  ++ + W ++I  + Q+ + +EAL++FR    +S   P++  +  V++A A LG 
Sbjct: 208 FDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRM-LRSSAEPDEVTVVLVLSAVAQLGT 266

Query: 246 LVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
           + SGK  H  V  S C + N  VA+ALVDMY KCGS+  +  VF+ I N  +V + +MI 
Sbjct: 267 VESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMIN 326

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A +G  R +L++F ++  +G+ P D+TF+G+L+ACSHSGLV+EG     SM  +YGI 
Sbjct: 327 GYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGID 386

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P  +HY C+VD+LGR G ++EA+ L +S+ + PD   ++W +LL+A RLH  + +    +
Sbjct: 387 PKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDA--VMWVSLLAACRLHKNMALGQRIA 444

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
           + L+ +    +  Y+ LSN YA  G+WE V  +RS MK +GI KEPGCS +EI  + Y F
Sbjct: 445 DFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEF 504

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
            AG+       E+ ++L ++   +KE G+V  +T LV  D+++  +E+ + +HSE+LA+A
Sbjct: 505 VAGDMSHPCTDEIYAMLDKMNALVKEHGHV-PQTELVLHDLDEATKEKALAVHSEKLAVA 563

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLIS   G TI+I+KNLR C DCH V KLIS I  R  V RD NRFHHF +GSC+CGD+
Sbjct: 564 FGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDY 623

Query: 605 W 605
           W
Sbjct: 624 W 624



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 35/236 (14%)

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
           AS++ AC++  R       H  VVR G + +  VA  L   YA  G +++S  +  R  +
Sbjct: 28  ASLLAACSTARR---ASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKD 84

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS--------HS- 344
           P+ + YTS I   +  GL    L L ++M+S G+ P   T    L AC         H+ 
Sbjct: 85  PTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALHAY 144

Query: 345 --GLVDEGIQH----LDSMYRK----------YGIIPDAKHYTCVVDML---GRTGRLDE 385
              L   G  +    L SMY +          +  +PD  H   V  ML      G LD+
Sbjct: 145 AFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPD-PHVVSVTAMLTCYANMGALDD 203

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           A +L   +   P    + W  ++     HG+ + A++   +++ S+ +     V L
Sbjct: 204 ARRLFDGL---PRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVL 256


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/630 (33%), Positives = 342/630 (54%), Gaps = 77/630 (12%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYV-----RLKKTQVARQLFDEMLEPNVVSYTSLM 100
           L   H+ IL++G L +++    L+  Y      R    + + ++FD + +PNV  +  ++
Sbjct: 50  LKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 109

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF- 159
              I   +P  A+LL+ +M+     PN++T+  V+KACS    +  G Q+H H+   G  
Sbjct: 110 KVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLG 169

Query: 160 -------------------------------QYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
                                          + + V  ++++D Y +  +V+ AR +F+ 
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEG 229

Query: 189 MGCRNVVS--------------------------------WTSIIVAHAQNAQGHEALEM 216
           M  R+++S                                W+++I  + Q     EALE+
Sbjct: 230 MPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEI 289

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F +   + + RP + +L SV++ACA+LG L  G+  H    R+  + + V+ ++LVDMYA
Sbjct: 290 FHQMQ-KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 348

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG ++ + +VF ++SN  V ++ +MI G A +G    ++DLF++M    I PN++TFVG
Sbjct: 349 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVG 405

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL+AC+H GLV +G+   +SM ++YG+ P  +HY C+VD+LGR G L EA K+  SI  +
Sbjct: 406 VLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 465

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           P   P +WG LL A R HG V++       L+E   Q +  Y  LSN YA AG WE V  
Sbjct: 466 PT--PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGE 523

Query: 457 LRSEMKRTGIHKEPGCSWVEI-RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
           +R  MK  GI   PG S +++ R + + F  G+    +  ++  +L +++ +++  GY  
Sbjct: 524 VRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEP 583

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
             + ++F D+++E +E  V  HSE+LA+ FGLI+   G TIRI+KNLR+C DCH   KLI
Sbjct: 584 DPSQVLF-DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLI 642

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S +  R+ +VRD  R+HHFRNG+CSC DFW
Sbjct: 643 SQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 328/560 (58%), Gaps = 10/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ +    L++ Y +      AR++FD M   +++   +L++G  + G+
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF ++    +  N  T A V+K+ + L    T +Q+H      GF ++  V + 
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNG 444

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y KC+ +  A RVF+     ++++ TS+I A +Q   G  A+++F E   +  + P
Sbjct: 445 LIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE-P 503

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  +L+S++NACASL     GK  H  +++     +    +ALV  YAKCGS+  ++  F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +    VV++++MI G A++G G+ +L+LF  M+  GI PN +T   VL AC+H+GLVD
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  ++ +SM   +GI    +HY+C++D+LGR G+LD+A +L  S+    +    +WG LL
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS--IWGALL 681

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ +L     + +  +V L+NTYA AG W  V  +R  MK + I K
Sbjct: 682 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKK 741

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP  SW+E++D+ + F  G+       E+ + L EL   M + G+V      V VD+ D 
Sbjct: 742 EPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPN----VDVDLHDL 797

Query: 529 AREE---IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            R E   ++  HSERLA+AF L+S P G  IR+ KNLR+CRDCH  FK IS IV R+ ++
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIII 857

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD+NRFHHFR+G+CSCGD+W
Sbjct: 858 RDINRFHHFRDGTCSCGDYW 877



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 188/350 (53%), Gaps = 12/350 (3%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+  A +H+ +LKSG L++    NHLI+ Y + ++   AR++FDE+ +P  VS++SL+  
Sbjct: 20  LLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTA 77

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y N G P+ A+  F  M    V  NEF    V+K    + D   G Q+H      GF  +
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSD 134

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + V ++LV MYG    +D ARRVF+     RN VSW  ++ A+ +N Q  +A+++F E  
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 194

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           + S  +P +   + V+NAC     + +G+  H +VVR G + +   A+ALVDMY K G V
Sbjct: 195 W-SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + +  +F ++ +  VV++ ++I G    G    +++L  +M   G+ PN  T   +L AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV--VDMLGRTGRLDEAYKL 389
           S +G  D G Q    M +      D+  Y  V  VDM  +   LD+A K+
Sbjct: 314 SGAGAFDLGRQIHGFMIKANA---DSDDYIGVGLVDMYAKNHFLDDARKV 360



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 176/344 (51%), Gaps = 3/344 (0%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYIN 105
           A VH+  + +GF S+ F  N L+  Y        AR++F+E   E N VS+  LM+ Y+ 
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             Q   A+ +F +M+ + + P EF F+ V+ AC+   ++  G+Q+H  +   G+  ++  
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LVDMY K   VD A  +F+ M   +VVSW ++I     N   H A+E+  +  Y S 
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY-SG 298

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             PN   L+S++ AC+  G    G+  HG ++++  + +D +   LVDMYAK   ++ + 
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ + +  ++   ++I G +  G    +L LF E+   G+  N  T   VL + + S 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA-SL 417

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
                 + + ++  K G I DA     ++D   +   L +A ++
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRV 461



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 133/282 (47%), Gaps = 10/282 (3%)

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+  Y KC     ARRVFD +     VSW+S++ A++ N     A++ F     +     
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV-CC 101

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  L  V+  C    RL  G   H + + +G   +  VA+ALV MY   G ++ + +VF
Sbjct: 102 NEFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 158

Query: 289 NRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           N   S  + V++  ++    K      ++ +F EM+  GI+P +  F  V++AC+ S  +
Sbjct: 159 NEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G Q + +M  + G   D      +VDM  + GR+D A  + + +   PD   + W  L
Sbjct: 219 EAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKM---PDSDVVSWNAL 274

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           +S   L+G    A+E   Q+  S   V N +   S   A +G
Sbjct: 275 ISGCVLNGHDHRAIELLLQMKYSG-LVPNVFTLSSILKACSG 315



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 37/207 (17%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL--------- 84
           I  L +C H      +  E+L+ G   + F L+ L+N    L   +  +Q+         
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536

Query: 85  --------------------------FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
                                     F  + E  VVS+++++ G    G  + AL LF +
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGR 596

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           M+   + PN  T  +V+ AC+    +   K+  ++  E FG        S ++D+ G+  
Sbjct: 597 MVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAG 656

Query: 178 DVDGARRVFDLMGCR-NVVSWTSIIVA 203
            +D A  + + M  + N   W +++ A
Sbjct: 657 KLDDAMELVNSMPFQANASIWGALLGA 683


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 328/560 (58%), Gaps = 10/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ +    L++ Y +      AR++FD M   +++   +L++G  + G+
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF ++    +  N  T A V+K+ + L    T +Q+H      GF ++  V + 
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNG 444

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y KC+ +  A RVF+     ++++ TS+I A +Q   G  A+++F E   +  + P
Sbjct: 445 LIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE-P 503

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  +L+S++NACASL     GK  H  +++     +    +ALV  YAKCGS+  ++  F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +    VV++++MI G A++G G+ +L+LF  M+  GI PN +T   VL AC+H+GLVD
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  ++ +SM   +GI    +HY+C++D+LGR G+LD+A +L  S+    +    +WG LL
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS--IWGALL 681

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ +L     + +  +V L+NTYA AG W  V  +R  MK + I K
Sbjct: 682 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKK 741

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP  SW+E++D+ + F  G+       E+ + L EL   M + G+V      V VD+ D 
Sbjct: 742 EPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPN----VDVDLHDL 797

Query: 529 AREE---IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            R E   ++  HSERLA+AF L+S P G  IR+ KNLR+CRDCH  FK IS IV R+ ++
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIII 857

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD+NRFHHFR+G+CSCGD+W
Sbjct: 858 RDINRFHHFRDGTCSCGDYW 877



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 12/350 (3%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+  A +H+ +LKSG L++    NHLI+ Y + ++   AR+ FDE+ +P  VS++SL+  
Sbjct: 20  LLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTA 77

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y N G P+ A+  F  M    V  NEF    V+K    + D   G Q+H      GF  +
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSD 134

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + V ++LV MYG    +D ARRVF+     RN VSW  ++ A+ +N Q  +A+++F E  
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 194

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           + S  +P +   + V+NAC     + +G+  H +VVR G + +   A+ALVDMY K G V
Sbjct: 195 W-SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + +  +F ++ +  VV++ ++I G    G    +++L  +M   G+ PN  T   +L AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV--VDMLGRTGRLDEAYKL 389
           S +G  D G Q    M +      D+  Y  V  VDM  +   LD+A K+
Sbjct: 314 SGAGAFDLGRQIHGFMIKANA---DSDDYIGVGLVDMYAKNHFLDDARKV 360



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 176/344 (51%), Gaps = 3/344 (0%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYIN 105
           A VH+  + +GF S+ F  N L+  Y        AR++F+E   E N VS+  LM+ Y+ 
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             Q   A+ +F +M+ + + P EF F+ V+ AC+   ++  G+Q+H  +   G+  ++  
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LVDMY K   VD A  +F+ M   +VVSW ++I     N   H A+E+  +  Y S 
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY-SG 298

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             PN   L+S++ AC+  G    G+  HG ++++  + +D +   LVDMYAK   ++ + 
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ + +  ++   ++I G +  G    +L LF E+   G+  N  T   VL + + S 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA-SL 417

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
                 + + ++  K G I DA     ++D   +   L +A ++
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRV 461



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 10/282 (3%)

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+  Y KC     ARR FD +     VSW+S++ A++ N     A++ F     +     
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV-CC 101

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N+  L  V+  C    RL  G   H + + +G   +  VA+ALV MY   G ++ + +VF
Sbjct: 102 NEFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 158

Query: 289 NRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           N   S  + V++  ++    K      ++ +F EM+  GI+P +  F  V++AC+ S  +
Sbjct: 159 NEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G Q + +M  + G   D      +VDM  + GR+D A  + + +   PD   + W  L
Sbjct: 219 EAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKM---PDSDVVSWNAL 274

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           +S   L+G    A+E   Q+  S   V N +   S   A +G
Sbjct: 275 ISGCVLNGHDHRAIELLLQMKYSG-LVPNVFTLSSILKACSG 315



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 37/207 (17%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL--------- 84
           I  L +C H      +  E+L+ G   + F L+ L+N    L   +  +Q+         
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536

Query: 85  --------------------------FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
                                     F  + E  VVS+++++ G    G  + AL LF +
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGR 596

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           M+   + PN  T  +V+ AC+    +   K+  ++  E FG        S ++D+ G+  
Sbjct: 597 MVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAG 656

Query: 178 DVDGARRVFDLMGCR-NVVSWTSIIVA 203
            +D A  + + M  + N   W +++ A
Sbjct: 657 KLDDAMELVNSMPFQANASIWGALLGA 683


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 321/583 (55%), Gaps = 12/583 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  L     +H+ ++K   L+ N+F  + L++ Y   ++   ARQ+FD +
Sbjct: 274 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 333

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLI 145
            +    +  + +++ GY   G  + AL LF +M     + P E T A+V+ AC+      
Sbjct: 334 PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFA 393

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
             + +H ++   G   N  V ++L+DMY +    D ARR+F ++   +VVSW ++I    
Sbjct: 394 GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCV 453

Query: 206 QNAQGHEALEMFREFNYQSRDR--PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
                 +A ++ RE          PN   L +++  CA L     GK  HG  VR   + 
Sbjct: 454 VQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDT 513

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V SALVDMYAKCG +  S  VF+R+   + +T+  +I+    +GLG  +  LF+ M 
Sbjct: 514 DVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMT 573

Query: 324 SRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           + G  +PN+VTF+  L ACSHSG+VD G+Q   +M R +G+ P      CVVD+LGR GR
Sbjct: 574 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 633

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           LDEAY +  S++   +     W T+L A RLH  V +   A  +L+E   + A+ YV L 
Sbjct: 634 LDEAYAMVTSMEAG-EQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLC 692

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N Y+ AG+W     +RS M+R G+ KEPGCSW+E+    + F AG +      EV + + 
Sbjct: 693 NIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHME 752

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
            L  +M  RGY    T  V  D++D  +  ++  HSE+LA+AFGL+    G TIR+ KNL
Sbjct: 753 ALWGEMVARGYTP-DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNL 811

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH+  K +S +V R+ V+RDV RFHHFRNG CSCGD+W
Sbjct: 812 RVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 33  FIQQLQECKHLISLASV-------HSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQ 83
            +  L+   HL + A+        H+  LK+G L     F  N L++ Y RL     A++
Sbjct: 165 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 224

Query: 84  LFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           LF        +VV++ ++++  +  G    A+     M+   V P+  TFA+ + ACS L
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 142 ADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWT 198
             L  G+++H + I+      N  V S+LVDMY     V  AR+VFD++    + +  W 
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 344

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQ     EAL +F     ++   P +  +ASV+ ACA        +  HG VV+
Sbjct: 345 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 404

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   N  V +AL+DMYA+ G  + + ++F  +  P VV++ ++I G    G    +  L
Sbjct: 405 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 464

Query: 319 FNEMI---SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
             EM      G+ PN +T + +L  C+       G + +     ++ +  D    + +VD
Sbjct: 465 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVD 523

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           M  + G L  +  +   +   P    + W  L+ A  +HG
Sbjct: 524 MYAKCGCLALSRAVFDRL---PRRNTITWNVLIMAYGMHG 560



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 187/432 (43%), Gaps = 55/432 (12%)

Query: 45  SLASVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLM 100
           S  ++H+  L+ G L   +    N L+  Y R  +   A ++F  + +   + VS+ SL+
Sbjct: 75  SARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI 134

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPN----------------EFTFATVIKACSMLADL 144
           +          AL LF++      W +                 FT  +V++A S L   
Sbjct: 135 S----------ALCLFRR------WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA 178

Query: 145 ITGKQIHTHIETFGFQYNLV------VCSSLVDMYGKCNDVDGARRVF--DLMGCRNVVS 196
               ++      F  +  L+        ++L+ MY +   V  A+R+F     G  +VV+
Sbjct: 179 AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVT 238

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W +++    Q+    EA++   +       RP+    AS + AC+ L  L  G+  H  V
Sbjct: 239 WNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDGVTFASALPACSRLELLDVGREMHAYV 297

Query: 257 VRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNRI--SNPSVVTYTSMIVGAAKYGLGR 313
           ++      N  VASALVDMYA    V  + +VF+ +  S   +  + +MI G A+ G+  
Sbjct: 298 IKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDE 357

Query: 314 FSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
            +L LF  M +  G  P + T   VL AC+ S     G + +     K G+  +      
Sbjct: 358 EALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQNA 416

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL--IES 430
           ++DM  R G+ D A ++   + + PD   + W TL++   + G V  A + + ++  +E 
Sbjct: 417 LMDMYARLGKTDVARRIFAMVDL-PD--VVSWNTLITGCVVQGHVADAFQLAREMQQLEE 473

Query: 431 NQQVANAYVTLS 442
              V NA   ++
Sbjct: 474 GGVVPNAITLMT 485



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 156/386 (40%), Gaps = 66/386 (17%)

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-- 161
           I M  PQ  L             +       IK+ + L D  + + IH      G  +  
Sbjct: 46  ITMASPQQQL-------------DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRP 92

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           +  V ++L+  Y +C  +  A  VF  +     + VS+ S+I           AL +FR 
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI----------SALCLFRR 142

Query: 220 FNYQSR--------DRP-NQHMLASVINACASLGRLVS----GKVAHGVVVRSGC----- 261
           +++             P     L SV+ A + L    +    G+ AH   +++G      
Sbjct: 143 WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQ 202

Query: 262 --EFNDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLD 317
              FN     AL+ MYA+ G V  + ++F   +     VVT+ +M+    + G+   ++ 
Sbjct: 203 RFAFN-----ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQ 257

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
              +M++ G++P+ VTF   L ACS   L+D G +    + +   +  ++   + +VDM 
Sbjct: 258 TLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMY 317

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLL--WGTLLSASRLHG------RVDIAVEASNQLIE 429
               ++ +A ++   +   PD G  L  W  ++      G      R+   +EA    + 
Sbjct: 318 ATHEQVGKARQVFDMV---PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 374

Query: 430 SNQQVANAYVTLSNTYALAGEWENVH 455
               +A+     + + A AG+ E VH
Sbjct: 375 CETTMASVLPACARSEAFAGK-EAVH 399


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 321/583 (55%), Gaps = 12/583 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  L     +H+ ++K   L+ N+F  + L++ Y   ++   ARQ+FD +
Sbjct: 274 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 333

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLI 145
            +    +  + +++ GY   G  + AL LF +M     + P E T A+V+ AC+      
Sbjct: 334 PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFA 393

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
             + +H ++   G   N  V ++L+DMY +    D ARR+F ++   +VVSW ++I    
Sbjct: 394 GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCV 453

Query: 206 QNAQGHEALEMFREFNYQSRDR--PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
                 +A ++ RE          PN   L +++  CA L     GK  HG  VR   + 
Sbjct: 454 VQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDT 513

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V SALVDMYAKCG +  S  VF+R+   + +T+  +I+    +GLG  +  LF+ M 
Sbjct: 514 DVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMT 573

Query: 324 SRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           + G  +PN+VTF+  L ACSHSG+VD G+Q   +M R +G+ P      CVVD+LGR GR
Sbjct: 574 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 633

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           LDEAY +  S++   +     W T+L A RLH  V +   A  +L+E   + A+ YV L 
Sbjct: 634 LDEAYAMVTSMETG-EQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLC 692

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N Y+ AG+W     +RS M+R G+ KEPGCSW+E+    + F AG +      EV + + 
Sbjct: 693 NIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHME 752

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
            L  +M  RGY    T  V  D++D  +  ++  HSE+LA+AFGL+    G TIR+ KNL
Sbjct: 753 ALWGEMVARGYTP-DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNL 811

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH+  K +S +V R+ V+RDV RFHHFRNG CSCGD+W
Sbjct: 812 RVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 33  FIQQLQECKHLISLASV-------HSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQ 83
            +  L+   HL + A+        H+  LK+G L     F  N L++ Y RL     A++
Sbjct: 165 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 224

Query: 84  LFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           LF        +VV++ ++++  +  G    A+     M+   V P+  TFA+ + ACS L
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 142 ADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWT 198
             L  G+++H + I+      N  V S+LVDMY     V  AR+VFD++    + +  W 
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 344

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQ     EAL +F     ++   P +  +ASV+ ACA        +  HG VV+
Sbjct: 345 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 404

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   N  V +AL+DMYA+ G  + + ++F  +  P VV++ ++I G    G    +  L
Sbjct: 405 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 464

Query: 319 FNEMI---SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
             EM      G+ PN +T + +L  C+       G + +     ++ +  D    + +VD
Sbjct: 465 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVD 523

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           M  + G L  +  +   +   P    + W  L+ A  +HG
Sbjct: 524 MYAKCGCLALSRAVFDRL---PRRNTITWNVLIMAYGMHG 560



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 187/432 (43%), Gaps = 55/432 (12%)

Query: 45  SLASVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLM 100
           S  ++H+  L+ G L   +    N L+  Y R  +   A ++F  + +   + VS+ SL+
Sbjct: 75  SARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI 134

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPN----------------EFTFATVIKACSMLADL 144
           +          AL LF++      W +                 FT  +V++A S L   
Sbjct: 135 S----------ALCLFRR------WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA 178

Query: 145 ITGKQIHTHIETFGFQYNLV------VCSSLVDMYGKCNDVDGARRVF--DLMGCRNVVS 196
               ++      F  +  L+        ++L+ MY +   V  A+R+F     G  +VV+
Sbjct: 179 AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVT 238

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W +++    Q+    EA++   +       RP+    AS + AC+ L  L  G+  H  V
Sbjct: 239 WNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDGVTFASALPACSRLELLDVGREMHAYV 297

Query: 257 VRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNRI--SNPSVVTYTSMIVGAAKYGLGR 313
           ++      N  VASALVDMYA    V  + +VF+ +  S   +  + +MI G A+ G+  
Sbjct: 298 IKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDE 357

Query: 314 FSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
            +L LF  M +  G  P + T   VL AC+ S     G + +     K G+  +      
Sbjct: 358 EALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQNA 416

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL--IES 430
           ++DM  R G+ D A ++   + + PD   + W TL++   + G V  A + + ++  +E 
Sbjct: 417 LMDMYARLGKTDVARRIFAMVDL-PD--VVSWNTLITGCVVQGHVADAFQLAREMQQLEE 473

Query: 431 NQQVANAYVTLS 442
              V NA   ++
Sbjct: 474 GGVVPNAITLMT 485



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 156/386 (40%), Gaps = 66/386 (17%)

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-- 161
           I M  PQ  L             +       IK+ + L D  + + IH      G  +  
Sbjct: 46  ITMASPQQQL-------------DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRP 92

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           +  V ++L+  Y +C  +  A  VF  +     + VS+ S+I           AL +FR 
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI----------SALCLFRR 142

Query: 220 FNYQSR--------DRP-NQHMLASVINACASLGRLVS----GKVAHGVVVRSGC----- 261
           +++             P     L SV+ A + L    +    G+ AH   +++G      
Sbjct: 143 WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQ 202

Query: 262 --EFNDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLD 317
              FN     AL+ MYA+ G V  + ++F   +     VVT+ +M+    + G+   ++ 
Sbjct: 203 RFAFN-----ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQ 257

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
              +M++ G++P+ VTF   L ACS   L+D G +    + +   +  ++   + +VDM 
Sbjct: 258 TLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMY 317

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLL--WGTLLSASRLHG------RVDIAVEASNQLIE 429
               ++ +A ++   +   PD G  L  W  ++      G      R+   +EA    + 
Sbjct: 318 ATHEQVGKARQVFDMV---PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 374

Query: 430 SNQQVANAYVTLSNTYALAGEWENVH 455
               +A+     + + A AG+ E VH
Sbjct: 375 CETTMASVLPACARSEAFAGK-EAVH 399


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/506 (39%), Positives = 314/506 (62%), Gaps = 10/506 (1%)

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           R++F+ M + ++VS+ ++++G    G  + AL++ ++M    + P+ FT ++V+   +  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
            +L+ GK+IH +    G+  ++ + SSL+DMY KC  VD + RVF ++   + +SW SII
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
               QN    E L+ F++    ++ +PN    +S++ ACA L  L  GK  HG ++RS  
Sbjct: 270 AGCVQNGMFDEGLKFFQQM-LIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           + N  +ASALVDMYAKCG++  +  +F+++    +V++T+MI+G A +G    ++ LF  
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M   G+KPN V F+ VL ACSH+GLVDE  ++ +SM + Y IIP  +HY  V D+LGR G
Sbjct: 389 MEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVG 448

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           RL+EAY+    + ++P G   +W TLL+A R+H  +++A + S +L   + Q   AYV L
Sbjct: 449 RLEEAYEFISDMHIEPTGS--VWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLL 506

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN---ALFERGSEVL 498
           SN Y+ AG W++   LR  M+  G+ K+P CSW+EI+++ +AF AG+     ++R +E L
Sbjct: 507 SNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEAL 566

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
            +L E   +M+  GYV   T  V  DVE+E +  ++  HSERLA+ FG+IS P G TIR+
Sbjct: 567 KVLLE---QMEREGYVLDTTE-VLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRV 622

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFV 584
            KNLR+C DCH   K IS IV R+ V
Sbjct: 623 TKNLRVCVDCHTATKFISKIVGREIV 648



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           R    T +  +    E  +L+    +H   +++G+ ++ F  + LI+ Y +  +   + +
Sbjct: 193 RPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 252

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
           +F  + + + +S+ S++AG +  G     L  FQ+ML   + PN  +F++++ AC+ L  
Sbjct: 253 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 312

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           L  GKQ+H +I    F  N+ + S+LVDMY KC ++  AR +FD M   ++VSWT++I+ 
Sbjct: 313 LHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMG 372

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +A +   ++A+ +F+    +   +PN     +V+ AC+  G
Sbjct: 373 YALHGHAYDAISLFKRMEVEGV-KPNYVAFMAVLTACSHAG 412



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           ML +  +P+   F +V+K+C+++ DL  G+ +H  I   G  ++L  C++L++MY K
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK 57


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/601 (36%), Positives = 344/601 (57%), Gaps = 35/601 (5%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT----QVARQLFDEML 89
           +  L +CK L  L  +H++++K+  L++ FT++ LI  +  L         A  +F  + 
Sbjct: 10  VSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLI-AFCSLSGVSGGLDYASSVFSRIQ 68

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN--EFTFATVIKACSMLADLITG 147
            PN   + +L+ G+ +   P  +L+L+ +ML  L + +  EF+  +V+KAC  L     G
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +Q+H  +      ++  V +S+V MY    +++ ARRVFD M  R+VVSW S+I  + + 
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKA 188

Query: 208 AQGHEALEMFREFNYQSRD--------------------RPNQHMLASVINACASLGRLV 247
            +   A E+F E     RD                    RP+   + SV++A A LG + 
Sbjct: 189 GEIELASELFDEM--PERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVE 246

Query: 248 SGKVAHGVVVRSGCEFND-VVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVG 305
            GK  H  V  +  E +   + SAL+DMY+KCG +  +  VF  IS+  ++  + SMI G
Sbjct: 247 EGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISG 306

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +GL R +LD+F EM    I+PN++TF+G+L  CSH GLV+EG  + +SM+ KY I+P
Sbjct: 307 LAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVP 366

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+ GR GRL++A  + +++  + D   L W  +LSAS  HG ++I   A+ 
Sbjct: 367 RIQHYGCMIDLFGRAGRLEDALGVIQNMPFEAD--LLAWKAILSASMKHGHIEIGKSAAL 424

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           + IE     +++YV LSN YA AG W++V  +R  M++ G+ K  GCS + +  + + F 
Sbjct: 425 RAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFL 484

Query: 486 AGNALFERGS-EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
            G  L    S +VL+ + E+  ++K +GY    T  V +D+EDE +E ++ LHSE++A+A
Sbjct: 485 LGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQ-VLLDIEDEGKESLLNLHSEKMAIA 543

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLI I K   I I+KNLR+C DCH   KL+S +  R  ++RD NRFHHF NG CSC ++
Sbjct: 544 FGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEY 603

Query: 605 W 605
           W
Sbjct: 604 W 604


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 321/583 (55%), Gaps = 12/583 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  L     +H+ ++K   L+ N+F  + L++ Y   ++   ARQ+FD +
Sbjct: 276 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 335

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLI 145
            +    +  + +++ GY   G  + AL LF +M     + P E T A+V+ AC+      
Sbjct: 336 PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFA 395

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
             + +H ++   G   N  V ++L+DMY +    D ARR+F ++   +VVSW ++I    
Sbjct: 396 GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCV 455

Query: 206 QNAQGHEALEMFREFNYQSRDR--PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
                 +A ++ RE          PN   L +++  CA L     GK  HG  VR   + 
Sbjct: 456 VQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDT 515

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V SALVDMYAKCG +  S  VF+R+   + +T+  +I+    +GLG  +  LF+ M 
Sbjct: 516 DVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMT 575

Query: 324 SRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           + G  +PN+VTF+  L ACSHSG+VD G+Q   +M R +G+ P      CVVD+LGR GR
Sbjct: 576 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 635

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           LDEAY +  S++   +     W T+L A RLH  V +   A  +L+E   + A+ YV L 
Sbjct: 636 LDEAYAMVTSMETG-EQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLC 694

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N Y+ AG+W     +RS M+R G+ KEPGCSW+E+    + F AG +      EV + + 
Sbjct: 695 NIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHME 754

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
            L  +M  RGY    T  V  D++D  +  ++  HSE+LA+AFGL+    G TIR+ KNL
Sbjct: 755 ALWGEMVARGYTP-DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNL 813

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH+  K +S +V R+ V+RDV RFHHFRNG CSCGD+W
Sbjct: 814 RVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 33  FIQQLQECKHLISLASV-------HSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQ 83
            +  L+   HL + A+        H+  LK+G L     F  N L++ Y RL     A++
Sbjct: 167 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 226

Query: 84  LFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           LF        +VV++ ++++  +  G    A+     M+   V P+  TFA+ + ACS L
Sbjct: 227 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 286

Query: 142 ADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWT 198
             L  G+++H + I+      N  V S+LVDMY     V  AR+VFD++    + +  W 
Sbjct: 287 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 346

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQ     EAL +F     ++   P +  +ASV+ ACA        +  HG VV+
Sbjct: 347 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 406

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   N  V +AL+DMYA+ G  + + ++F  +  P VV++ ++I G    G    +  L
Sbjct: 407 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 466

Query: 319 FNEMI---SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
             EM      G+ PN +T + +L  C+       G + +     ++ +  D    + +VD
Sbjct: 467 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVD 525

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           M  + G L  +  +   +   P    + W  L+ A  +HG
Sbjct: 526 MYAKCGCLALSRAVFDRL---PRRNTITWNVLIMAYGMHG 562



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 187/432 (43%), Gaps = 55/432 (12%)

Query: 45  SLASVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLM 100
           S  ++H+  L+ G L   +    N L+  Y R  +   A ++F  + +   + VS+ SL+
Sbjct: 77  SARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI 136

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPN----------------EFTFATVIKACSMLADL 144
           +          AL LF++      W +                 FT  +V++A S L   
Sbjct: 137 S----------ALCLFRR------WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA 180

Query: 145 ITGKQIHTHIETFGFQYNLV------VCSSLVDMYGKCNDVDGARRVF--DLMGCRNVVS 196
               ++      F  +  L+        ++L+ MY +   V  A+R+F     G  +VV+
Sbjct: 181 AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVT 240

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W +++    Q+    EA++   +       RP+    AS + AC+ L  L  G+  H  V
Sbjct: 241 WNTMVSVLVQSGMFDEAVQTLYDMVALGV-RPDGVTFASALPACSRLELLDVGREMHAYV 299

Query: 257 VRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNRI--SNPSVVTYTSMIVGAAKYGLGR 313
           ++      N  VASALVDMYA    V  + +VF+ +  S   +  + +MI G A+ G+  
Sbjct: 300 IKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDE 359

Query: 314 FSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
            +L LF  M +  G  P + T   VL AC+ S     G + +     K G+  +      
Sbjct: 360 EALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQNA 418

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL--IES 430
           ++DM  R G+ D A ++   + + PD   + W TL++   + G V  A + + ++  +E 
Sbjct: 419 LMDMYARLGKTDVARRIFAMVDL-PD--VVSWNTLITGCVVQGHVADAFQLAREMQQLEE 475

Query: 431 NQQVANAYVTLS 442
              V NA   ++
Sbjct: 476 GGVVPNAITLMT 487



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 156/386 (40%), Gaps = 66/386 (17%)

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-- 161
           I M  PQ  L             +       IK+ + L D  + + IH      G  +  
Sbjct: 48  ITMASPQQQL-------------DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRP 94

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           +  V ++L+  Y +C  +  A  VF  +     + VS+ S+I           AL +FR 
Sbjct: 95  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI----------SALCLFRR 144

Query: 220 FNYQSR--------DRP-NQHMLASVINACASLGRLVS----GKVAHGVVVRSGC----- 261
           +++             P     L SV+ A + L    +    G+ AH   +++G      
Sbjct: 145 WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQ 204

Query: 262 --EFNDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLD 317
              FN     AL+ MYA+ G V  + ++F   +     VVT+ +M+    + G+   ++ 
Sbjct: 205 RFAFN-----ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQ 259

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
              +M++ G++P+ VTF   L ACS   L+D G +    + +   +  ++   + +VDM 
Sbjct: 260 TLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMY 319

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLL--WGTLLSASRLHG------RVDIAVEASNQLIE 429
               ++ +A ++   +   PD G  L  W  ++      G      R+   +EA    + 
Sbjct: 320 ATHEQVGKARQVFDMV---PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 376

Query: 430 SNQQVANAYVTLSNTYALAGEWENVH 455
               +A+     + + A AG+ E VH
Sbjct: 377 CETTMASVLPACARSEAFAGK-EAVH 401


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 327/557 (58%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+++LK+GF  N +  + LI+ Y +L K   A ++F  + E +VVS+T+++AGY    +
Sbjct: 495  IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEK 554

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               AL LF++M    +  +   FA+ I AC+ +  L  G+QIH      G+  +L V ++
Sbjct: 555  FAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNA 614

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            LV +Y +C  V  A   FD +  ++ +SW S+I   AQ+    EAL +F + + ++    
Sbjct: 615  LVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMS-KAGQEI 673

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            N       ++A A++  +  GK  H +++++G +    V++ L+ +YAKCG+++ +++ F
Sbjct: 674  NSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQF 733

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
              +   + +++ +M+ G +++G G  +L LF +M   G+ PN VTFVGVL ACSH GLVD
Sbjct: 734  FEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVD 793

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            EGI++  SM   +G++P  +HY CVVD+LGR+G L  A +  + + + PD   ++  TLL
Sbjct: 794  EGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDA--MVCRTLL 851

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            SA  +H  +DI   A++ L+E   + +  YV LSN YA+ G+W      R  MK  G+ K
Sbjct: 852  SACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKK 911

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            EPG SW+E+ +  +AF+AG+       ++   LR+L     E GY+  +T  +  D E  
Sbjct: 912  EPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYI-PQTNSLLNDAERR 970

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +     +HSE+LA+AFGL+S+     I + KNLR+C DCH+  K +S I +R  VVRD 
Sbjct: 971  QKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDS 1030

Query: 589  NRFHHFRNGSCSCGDFW 605
             RFHHF+ G CSC D+W
Sbjct: 1031 YRFHHFKGGICSCKDYW 1047



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 208/386 (53%), Gaps = 5/386 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK GF   T+  N L+  Y RL     A Q+F+ ML+ + VSY SL++G    G 
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+KM  + + P+  T A+++ ACS +  L+ GKQ H++    G   ++++  +
Sbjct: 353 SDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGA 412

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y KC+D+  A   F      NVV W  ++VA+      +E+ ++F +   +  + P
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIE-P 471

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ    S++  C+SL  +  G+  H  V+++G +FN  V+S L+DMYAK G ++++ K+F
Sbjct: 472 NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIF 531

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+    VV++T+MI G A++     +L+LF EM  +GI  +++ F   + AC+    ++
Sbjct: 532 RRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALN 591

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q + +     G   D      +V +  R G++ +AY     I    +   + W +L+
Sbjct: 592 QG-QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN---ISWNSLI 647

Query: 409 SASRLHGRVDIAVEASNQLIESNQQV 434
           S     G  + A+   +Q+ ++ Q++
Sbjct: 648 SGFAQSGHCEEALSLFSQMSKAGQEI 673



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 194/392 (49%), Gaps = 5/392 (1%)

Query: 24  RSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQ 83
           +  C T A  +        L+     HS  +K+G  S+      L++ YV+    + A +
Sbjct: 369 KPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHE 428

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
            F      NVV +  ++  Y  +     +  +F +M    + PN+FT+ ++++ CS L  
Sbjct: 429 FFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA 488

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           +  G+QIHT +   GFQ+N+ V S L+DMY K   +D A ++F  +  ++VVSWT++I  
Sbjct: 489 VDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAG 548

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           +AQ+ +  EAL +F+E   Q     N    AS I+ACA +  L  G+  H     SG   
Sbjct: 549 YAQHEKFAEALNLFKEMQDQGIHSDNIG-FASAISACAGIQALNQGQQIHAQACVSGYSD 607

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V +ALV +YA+CG V  +   F++I +   +++ S+I G A+ G    +L LF++M 
Sbjct: 608 DLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMS 667

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G + N  TF   + A ++   V  G Q + +M  K G   + +    ++ +  + G +
Sbjct: 668 KAGQEINSFTFGPAVSAAANVANVKLGKQ-IHAMIIKTGHDSETEVSNVLITLYAKCGNI 726

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           D+A +    +   P+   + W  +L+    HG
Sbjct: 727 DDAERQFFEM---PEKNEISWNAMLTGYSQHG 755



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 197/385 (51%), Gaps = 8/385 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +  G+ ++ F  N LI+ Y +      A+++FD + + + VS+ ++++G    G 
Sbjct: 192 IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGC 251

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+LLF +M  + V+P  + F++V+ AC+ +     G+Q+H  +   GF     VC++
Sbjct: 252 EEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNA 311

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV +Y +  +   A +VF+ M  R+ VS+ S+I   +Q     +ALE+F++       +P
Sbjct: 312 LVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCL-KP 370

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   +AS+++AC+S+G L+ GK  H   +++G   + ++  AL+D+Y KC  +  + + F
Sbjct: 371 DCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF 430

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                 +VV +  M+V          S  +F +M   GI+PN  T+  +L  CS    VD
Sbjct: 431 LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVD 490

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q + +   K G   +    + ++DM  + G+LD A K+ + ++   +   + W  ++
Sbjct: 491 LGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK---EKDVVSWTAMI 546

Query: 409 SASRLHGRVDIAVEASNQLIESNQQ 433
           +    H +     EA N   E   Q
Sbjct: 547 AGYAQHEKF---AEALNLFKEMQDQ 568



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 231/491 (47%), Gaps = 48/491 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +ILK GF +       L++ Y+       A  +FDEM    +  +  ++  ++    
Sbjct: 90  LHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKM 149

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSM-LADLITGKQIHTHIETFGFQYNLVVCS 167
               L LF++ML   V P+E T+A V++ C          ++IH    T G++ +L VC+
Sbjct: 150 AGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCN 209

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
            L+D+Y K   ++ A++VFD +  R+ VSW +++   +Q+    EA+ +F +  + S   
Sbjct: 210 PLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM-HTSGVY 268

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P  ++ +SV++AC  +     G+  HG+V++ G      V +ALV +Y++ G+   +++V
Sbjct: 269 PTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQV 328

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN +     V+Y S+I G ++ G    +L+LF +M    +KP+ VT   +L ACS  G +
Sbjct: 329 FNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL 388

Query: 348 DEGIQH------------------LDSMYRKYGIIPDAKHYTCVVD---------MLGRT 380
             G Q                   L  +Y K   I  A  +    +         ML   
Sbjct: 389 LVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY 448

Query: 381 GRLD---EAYKLAKSIQVDP-DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           G LD   E++K+   +Q++  +     + ++L        VD+  +   Q++++  Q  N
Sbjct: 449 GLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF-N 507

Query: 437 AYVT--LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
            YV+  L + YA  G+ ++   +   +K   +      SW        A  AG A  E+ 
Sbjct: 508 VYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV-----VSWT-------AMIAGYAQHEKF 555

Query: 495 SEVLSLLRELE 505
           +E L+L +E++
Sbjct: 556 AEALNLFKEMQ 566



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 171/422 (40%), Gaps = 62/422 (14%)

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143
            F + LE N    T+L   Y N       +     M    V  N  T+  ++  C     
Sbjct: 28  FFQKFLEHN----TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGW 83

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
              G ++H  I   GF   +V+C  L+D+Y    D+DGA  VFD M  R +  W  ++  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA-------HGVV 256
                     L +FR    Q + +P++   A V+  C        G V        H   
Sbjct: 144 FVAGKMAGRVLGLFRRM-LQEKVKPDERTYAGVLRGCG------GGDVPFHCVEKIHART 196

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           +  G E +  V + L+D+Y K G +N + KVF+ +     V++ +M+ G ++ G    ++
Sbjct: 197 ITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAV 256

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGI-------QHLDSMY 358
            LF +M + G+ P    F  VL AC+           H  ++ +G          L ++Y
Sbjct: 257 LLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLY 316

Query: 359 RKYG-IIP-----------DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD---PDG---G 400
            + G  IP           D   Y  ++  L + G  D+A +L K + +D   PD     
Sbjct: 317 SRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVA 376

Query: 401 PLL-----WGTLLSASRLHGRVDIAVEASNQLIES---NQQVANAYVTLSNTYALAGEWE 452
            LL      G LL   + H     A  +S+ ++E    +  V  + +  ++ + L+ E E
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE 436

Query: 453 NV 454
           NV
Sbjct: 437 NV 438


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/531 (36%), Positives = 317/531 (59%), Gaps = 31/531 (5%)

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134
           +++ + AR+LFDE+ + +V+S+ S+++GY++ G  +  L LF++ML              
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML-------------- 243

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV 194
                     + G  I+T + T      L + + L+DMY K  +++ A +VF+ MG R+V
Sbjct: 244 ----------LLG--INTDLATM-VSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 290

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSWTS+I  +A+      ++ +F E   +    PN   +A ++ ACASL  L  G+  HG
Sbjct: 291 VSWTSMIAGYAREGLSDMSVRLFHEMEKEDL-FPNSITMACILPACASLAALERGQEIHG 349

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            ++R+G   +  VA+ALVDMY KCG++  +  +F+ I    +V++T MI G   +G G  
Sbjct: 350 HILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSE 409

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           ++  FNEM + GI+P++V+F+ +L+ACSHSGL+DEG    + M     I P ++HY C+V
Sbjct: 410 AIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIV 469

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+L R G L +AYK  K + ++PD    +WG LL   R++  V +A + +  + E   + 
Sbjct: 470 DLLARAGNLSKAYKFIKMMPIEPDA--TIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN 527

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
              YV L+N YA A +WE V  LR  + R G+ K PGCSW+EI+ + + F  G++     
Sbjct: 528 TGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLA 587

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
           +++  LL++   +MKE G+   K     +  +D  +E  +  HSE++A+AFG++S+P G 
Sbjct: 588 NKIELLLKKTRTRMKEEGHF-PKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGK 646

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           T+R+ KNLR+C DCH++ K +S +V+RD ++RD NRFHHF++GSCSC   W
Sbjct: 647 TVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 136/255 (53%), Gaps = 4/255 (1%)

Query: 58  FLSNTFTLNH-LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
            +S   TLN+ L++ Y +      A Q+F+ M E +VVS+TS++AGY   G   +++ LF
Sbjct: 254 MVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 313

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
            +M    ++PN  T A ++ AC+ LA L  G++IH HI   GF  +  V ++LVDMY KC
Sbjct: 314 HEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC 373

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             +  AR +FD++  +++VSWT +I  +  +  G EA+  F E    S   P++    S+
Sbjct: 374 GALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMR-NSGIEPDEVSFISI 432

Query: 237 INACASLGRLVSGKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NP 294
           + AC+  G L  G     ++  + C E      + +VD+ A+ G+++ + K    +   P
Sbjct: 433 LYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEP 492

Query: 295 SVVTYTSMIVGAAKY 309
               + +++ G   Y
Sbjct: 493 DATIWGALLCGCRIY 507



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 25/322 (7%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+ +V++ C+ L  +  G++IH+ I++   + + V+ S LV MY  C D+   RR+FD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNYQSRDRPNQHMLASVINACASLGRL 246
               V  W  ++  +A+     E+L +F   RE   +  +   +           S   +
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 247 VSGKVAHGVVVRSGCEFNDVVA------------------SALVDMYAKCGSVNYSDKVF 288
           +SG V++G+  +    F  ++                   + L+DMY+K G++N + +VF
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVF 282

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   SVV++TSMI G A+ GL   S+ LF+EM    + PN +T   +L AC+    ++
Sbjct: 283 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALE 342

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q +     + G   D      +VDM  + G L  A  L   I   P+   + W  ++
Sbjct: 343 RG-QEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI---PEKDLVSWTVMI 398

Query: 409 SASRLHGRVDIAVEASNQLIES 430
           +   +HG    A+ A N++  S
Sbjct: 399 AGYGMHGYGSEAIAAFNEMRNS 420



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L +L     +H  IL++GF  +    N L++ Y++     +AR LFD + E ++
Sbjct: 332 LPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 391

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           VS+T ++AGY   G    A+  F +M  + + P+E +F +++ ACS
Sbjct: 392 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 437


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/612 (36%), Positives = 347/612 (56%), Gaps = 45/612 (7%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ----VARQLFDEML 89
           +  L +CK L  L  +H++++K+  L++ FT++ LI  +  L         A  +F  + 
Sbjct: 10  VSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLI-AFCSLSGVSGGLDYASSVFSRIQ 68

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN--EFTFATVIKACSMLADLITG 147
            PN   + +L+ G+ +   P  +L+L+ +ML  L + +  EF+  +V+KAC  L     G
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW---------- 197
           +Q+H  +      ++  V +S+V MY    +++ ARRVFD M  R+VVSW          
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKA 188

Query: 198 ---------------------TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
                                TS+I A+ QN    +AL++FRE       RP+   + SV
Sbjct: 189 GEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM-LSLGLRPDGPAIVSV 247

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFND-VVASALVDMYAKCGSVNYSDKVFNRISN-P 294
           ++A A LG +  GK  H  V  +  E +   + SAL+DMY+KCG +  +  VF  IS+  
Sbjct: 248 LSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRR 307

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           ++  + SMI G A +GL R +LD+F EM    I+PN++TF+G+L  CSH GLV+EG  + 
Sbjct: 308 NIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYF 367

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
           +SM+ KY I+P  +HY C++D+ GR GRL++A  + +++  + D   L W  +LSAS  H
Sbjct: 368 ESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEAD--LLAWKAILSASMKH 425

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G ++I   A+ + IE     +++YV LSN YA AG W++V  +R  M++ G+ K  GCS 
Sbjct: 426 GHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSS 485

Query: 475 VEIRDQTYAFYAGNALFERGS-EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
           + +  + + F  G  L    S +VL+ + E+  ++K +GY    T  V +D+EDE +E +
Sbjct: 486 MLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQ-VLLDIEDEGKESL 544

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           + LHSE++A+AFGLI I K   I I+KNLR+C DCH   KL+S +  R  ++RD NRFHH
Sbjct: 545 LNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHH 604

Query: 594 FRNGSCSCGDFW 605
           F NG CSC ++W
Sbjct: 605 FENGCCSCNEYW 616


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 323/544 (59%), Gaps = 10/544 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y R ++ + A + FD   E +VV +T++++ Y +  +   AL L ++M    +   
Sbjct: 174 LITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLG 233

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVF 186
             T+ +++ AC+   DL  G   H      G  + + VV  +LV++YGKC  VD ARRV 
Sbjct: 234 LPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVL 293

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  R  VSWT++I A+AQN    EA+ +F+  + +  + P+   L SV+++CA LG L
Sbjct: 294 DAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAE-PSDITLISVVDSCAVLGTL 352

Query: 247 VSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFN--RISNPSVVTYTSM 302
             GK  H  + RS   F+   ++ +A++ MY KCG++  + +VF    +   SVVT+T+M
Sbjct: 353 SLGKRIHARI-RSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAM 411

Query: 303 IVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           I   A+ G+G  +++LF EM I  G +PN VTF+ VL ACSH G +++  +H  SM   +
Sbjct: 412 IRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDF 471

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+ P   HY C+VD+LGR GRL EA KL    + D +   + W   LSA +++G ++ + 
Sbjct: 472 GVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHK-DFEADVVCWIAFLSACQMNGDLERSQ 530

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            A+ ++ E   +     V LSN YA  G   +V  +R+EMK +G+ K  G SW+EI ++ 
Sbjct: 531 RAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRV 590

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F   +    R  E+ S L  L R++KE GYV   T +V  DV++E + +++G HSERL
Sbjct: 591 HEFMVSDVSHPRKLEIYSELERLHREIKEAGYVP-DTKMVLRDVDEEKKVQLLGYHSERL 649

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+A G+IS P G T+R++KNLR+C DCH   K IS IV R  +VRD +RFHHF++G CSC
Sbjct: 650 AMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSC 709

Query: 602 GDFW 605
           GD+W
Sbjct: 710 GDYW 713



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 195/397 (49%), Gaps = 3/397 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           +   L +C+ L  +  +H++I       NTF  N L++ Y +      A+  F  +   N
Sbjct: 38  YASLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHN 97

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
             S+  LMA Y   G P+ A  LF  M    V PN  T +T + AC+   +L  G++++ 
Sbjct: 98  AHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNE 157

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I +   + +  V SSL+ MYG+C +++ A R FD    ++VV WT++I A+A N +   
Sbjct: 158 LIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSR 217

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND-VVASAL 271
           ALE+ R  + +   +       S+++ACAS   L +G   H      G + +  VVA  L
Sbjct: 218 ALELVRRMDLEG-IKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTL 276

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           V++Y KCG V+ + +V + +   + V++T+MI   A+ G    +++LF  M   G +P+D
Sbjct: 277 VNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSD 336

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T + V+ +C+  G +  G +    +               V+ M G+ G L+ A ++ +
Sbjct: 337 ITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFE 396

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            + +      + W  ++ A   +G  + A+E   +++
Sbjct: 397 CVPLRTR-SVVTWTAMIRAYAQNGVGEEAIELFQEML 432


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/512 (38%), Positives = 308/512 (60%), Gaps = 36/512 (7%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P++F F+ ++KAC+ L  +  GKQ+H H     +  + VV SSLVDMY KC  +D A+ V
Sbjct: 40  PDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAV 99

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-------------------------- 219
           FD +  +N +SWT+++  +A++ +  EALE+FR                           
Sbjct: 100 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAF 159

Query: 220 --FNYQSRDRPN---QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
             F    R+R +     +L+S++ ACA+L   ++G+  HG+V+  G +    +++AL+DM
Sbjct: 160 SVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDM 219

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAKC  V  +  +F+R+ +  VV++TS+IVG A++G    +L L++EM+S G+KPN+VTF
Sbjct: 220 YAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTF 279

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           VG+++ACSH G V +G +   SM + YGI P  +HYTC++D+LGR+G LDEA  L  ++ 
Sbjct: 280 VGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMP 339

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES-NQQVANAYVTLSNTYALAGEWEN 453
             PD     W  LLSA +  G+  + V  ++ L+ S   +  + Y+ LSN YA A  W  
Sbjct: 340 FPPDEP--TWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGK 397

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER-G 512
           V   R ++    + K+PG S VE+R +T  FYAG        ++  LL++LE +M+ R G
Sbjct: 398 VSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNG 457

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T  +  D++++ +E+++  HSER A+A+GL+    G  IRI+KNLR+C DCH V 
Sbjct: 458 YV-PDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVL 516

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           K IS+I ER+ +VRD  R+HHF+ G CSC DF
Sbjct: 517 KHISEITEREIIVRDATRYHHFKGGKCSCNDF 548



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 166/335 (49%), Gaps = 13/335 (3%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           K+  +    +C+ L    +V   I     + NT +   +++ Y +  + + A +LF  + 
Sbjct: 80  KSSLVDMYAKCRLLDCAKAVFDSIR----VKNTISWTAMVSGYAKSGRKEEALELFRRLP 135

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPNEFTFATVIKACSMLADLITGK 148
             N+ S+T+L++G++  G+   A  +F +M    V   +    ++++ AC+ LA  I G+
Sbjct: 136 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 195

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H  +   GF   + + ++L+DMY KC+DV  A+ +F  M  R+VVSWTS+IV  AQ+ 
Sbjct: 196 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 255

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVV 267
           Q  +AL ++ E       +PN+     +I AC+ +G +  G+     + +  G   +   
Sbjct: 256 QAEKALALYDEMVSHGV-KPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQH 314

Query: 268 ASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
            + L+D+  + G ++ ++ + + +   P   T+ +++    + G G+  + + + ++S  
Sbjct: 315 YTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHLVS-S 373

Query: 327 IKPND----VTFVGVLHACSHSGLVDEGIQHLDSM 357
            KP D    +    +  + S  G V E  + L  M
Sbjct: 374 FKPKDPSTYILLSNIYASASLWGKVSEARRKLGDM 408



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 75/134 (55%)

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  R+ ++W S++ A  Q     + L +F      S  RP+  + ++++ ACA+LG +  
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           GK  H   + S    +DVV S+LVDMYAKC  ++ +  VF+ I   + +++T+M+ G AK
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 309 YGLGRFSLDLFNEM 322
            G    +L+LF  +
Sbjct: 121 SGRKEEALELFRRL 134


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 321/559 (57%), Gaps = 18/559 (3%)

Query: 60  SNTFTLNHLINCYVRLKKT-QVARQLFDEMLEPNVVSYTSLMAGYINMG-QPQIALLLFQ 117
           +N   +NHL+N    +    Q+  Q+   +  PN  ++  L+  Y       Q A+LL++
Sbjct: 12  TNIKHINHLLNQSNSISHVKQIHAQILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYK 71

Query: 118 KMLG---NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
            ++    N ++P++ T+  V+KAC+ L  L  GKQ+H H+   GF+ +  +C+SL+  Y 
Sbjct: 72  AIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYA 131

Query: 175 KCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            C  ++ AR+VFD M   RNVVSW  +I ++A+       L MF E        P+ + +
Sbjct: 132 SCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEM--MKVYEPDCYTM 189

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDV----VASALVDMYAKCGSVNYSDKVFN 289
            SVI AC  LG L  G   H  V++  C+ N V    V + LVDMY KCGS+  + +VF 
Sbjct: 190 QSVIRACGGLGSLSLGMWVHAFVLKK-CDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFE 248

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVD 348
            +S   V ++ S+I+G A +G  + +LD F  M+    I PN +TFVGVL AC+HSG+VD
Sbjct: 249 GMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVD 308

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+ + + M ++Y + P   HY C+VD+  R G + EA  +   + + PD   ++W +LL
Sbjct: 309 EGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDA--VIWRSLL 366

Query: 409 SAS-RLHGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
            A  + H  V+++ E + Q+ ESN  V   AYV LS  YA A  W +V  LR  M   G+
Sbjct: 367 DACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGV 426

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K+PGCS +EI    + F+AG+    +  ++   + E++ K++  GY+   +G   +D  
Sbjct: 427 SKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEI 486

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E ++  + LHSERLA+AFGL++    + IR+ KNLR+C DCH V KLIS I   + +VR
Sbjct: 487 NEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVR 546

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFHHF++GSCSC D+W
Sbjct: 547 DRVRFHHFKDGSCSCMDYW 565



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 13/303 (4%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE-PN 92
           L+ C +L SL     VH+ +LK GF  +T+  N LI+ Y      + AR++FD M E  N
Sbjct: 92  LKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRN 151

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VVS+  ++  Y  +G   I L++F +M+  +  P+ +T  +VI+AC  L  L  G  +H 
Sbjct: 152 VVSWNVMIDSYAKVGDYDIVLIMFCEMM-KVYEPDCYTMQSVIRACGGLGSLSLGMWVHA 210

Query: 153 HIET---FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
            +          +++V + LVDMY KC  ++ A++VF+ M  R+V SW SII+  A + +
Sbjct: 211 FVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGK 270

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVA 268
              AL+ F       +  PN      V++AC   G +  G +   ++ +    E + V  
Sbjct: 271 AKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHY 330

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
             LVD+YA+ G +  +  V + +   P  V + S++    K      S++L  EM  +  
Sbjct: 331 GCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYK---QHASVELSEEMAKQIF 387

Query: 328 KPN 330
           + N
Sbjct: 388 ESN 390


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 321/583 (55%), Gaps = 12/583 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEM 88
           F   L  C  L  L     +H+ ++K   L+ N+F  + L++ Y   ++   ARQ+FD +
Sbjct: 122 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 181

Query: 89  LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLI 145
            +    +  + +++ GY   G  + AL LF +M     + P E T A+V+ AC+      
Sbjct: 182 PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFA 241

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
             + +H ++   G   N  V ++L+DMY +    D ARR+F ++   +VVSW ++I    
Sbjct: 242 GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCV 301

Query: 206 QNAQGHEALEMFREFNYQSRDR--PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
                 +A ++ RE          PN   L +++  CA L     GK  HG  VR   + 
Sbjct: 302 VQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDT 361

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V SALVDMYAKCG +  S  VF+R+   + +T+  +I+    +GLG  +  LF+ M 
Sbjct: 362 DVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMT 421

Query: 324 SRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           + G  +PN+VTF+  L ACSHSG+VD G+Q   +M R +G+ P      CVVD+LGR GR
Sbjct: 422 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 481

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           LDEAY +  S++   +     W T+L A RLH  V +   A  +L+E   + A+ YV L 
Sbjct: 482 LDEAYAMVTSMEAG-EQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLC 540

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N Y+ AG+W     +RS M+R G+ KEPGCSW+E+    + F AG +      EV + + 
Sbjct: 541 NIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHME 600

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
            L  +M  RGY    T  V  D++D  +  ++  HSE+LA+AFGL+    G TIR+ KNL
Sbjct: 601 ALWGEMVARGYTP-DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNL 659

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH+  K +S +V R+ V+RDV RFHHFRNG CSCGD+W
Sbjct: 660 RVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 33  FIQQLQECKHLISLASV-------HSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQ 83
            +  L+   HL + A+        H+  LK+G L     F  N L++ Y RL     A++
Sbjct: 13  LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 72

Query: 84  LFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           LF        +VV++ ++++  +  G    A+     M+   V P+  TFA+ + ACS L
Sbjct: 73  LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 132

Query: 142 ADLITGKQIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWT 198
             L  G+++H + I+      N  V S+LVDMY     V  AR+VFD++    + +  W 
Sbjct: 133 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 192

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQ     EAL +F     ++   P +  +ASV+ ACA        +  HG VV+
Sbjct: 193 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 252

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   N  V +AL+DMYA+ G  + + ++F  +  P VV++ ++I G    G    +  L
Sbjct: 253 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 312

Query: 319 FNEMI---SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
             EM      G+ PN +T + +L  C+       G + +     ++ +  D    + +VD
Sbjct: 313 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVD 371

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           M  + G L  +  +   +   P    + W  L+ A  +HG
Sbjct: 372 MYAKCGCLALSRAVFDRL---PRRNTITWNVLIMAYGMHG 408



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 18/233 (7%)

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGC--EFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           S + A A+  RL  G+ AH   +++G          +AL+ MYA+ G V  + ++F   +
Sbjct: 21  SHLPAAAAAVRL--GREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGAT 78

Query: 293 --NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
                VVT+ +M+    + G+   ++    +M++ G++P+ VTF   L ACS   L+D G
Sbjct: 79  PGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVG 138

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL--WGTLL 408
            +    + +   +  ++   + +VDM     ++ +A ++   +   PD G  L  W  ++
Sbjct: 139 REMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV---PDSGKQLGMWNAMI 195

Query: 409 SASRLHG------RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
                 G      R+   +EA    +     +A+     + + A AG+ E VH
Sbjct: 196 CGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK-EAVH 247


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 314/539 (58%), Gaps = 6/539 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y +    + AR  F+ +   +V+  + +++ Y    Q + A  LF +++ + V PN
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 363

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E++ ++V++AC+ +  L  GKQIH H    G + +L V ++L+D Y KCND+D + ++F 
Sbjct: 364 EYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS 423

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP-NQHMLASVINACASLGRL 246
            +   N VSW +I+V  +Q+  G EAL +F E   Q+   P  Q   +SV+ ACAS   +
Sbjct: 424 SLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM--QAAQMPCTQVTYSSVLRACASTASI 481

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
                 H  + +S    + V+ ++L+D YAKCG +  + KVF  +    ++++ ++I G 
Sbjct: 482 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 541

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A +G    +L+LF+ M    ++ ND+TFV +L  CS +GLV+ G+   DSM   +GI P 
Sbjct: 542 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPS 601

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HYTC+V +LGR GRL++A +    I   P    ++W  LLS+  +H  V +   ++ +
Sbjct: 602 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA--MVWRALLSSCIIHKNVALGRFSAEK 659

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           ++E   Q    YV LSN YA AG  + V  LR  M+  G+ K PG SWVEI+ + +AF  
Sbjct: 660 ILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 719

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+        + ++L  L  K    GY+     +V  DV+ E +  ++ +HSERLALA+G
Sbjct: 720 GSVDHPDMRVINAMLEWLNLKTSREGYI-PDINVVLHDVDKEQKTRMLWVHSERLALAYG 778

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L+  P G  IRI+KNLR C DCH  F +IS IV+R+ +VRD+NRFHHF +G CSCGD+W
Sbjct: 779 LVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 177/364 (48%), Gaps = 9/364 (2%)

Query: 48  SVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +VH  +++ G +   + F  N L+N Y +L     AR+LFD M E N+VS+ +L+  +  
Sbjct: 80  AVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQ 139

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIK-ACSMLADLITGKQIHTHIETFGFQYNLV 164
            G  + A  LF+++       N+F   T++K A +M A  + G  +H+     G  +N  
Sbjct: 140 RGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGG-VHSCAWKLGHDHNAF 198

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V S L+D Y  C+ V  A  VF+ +  ++ V WT+++  +++N     A  +F +    S
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRV-S 257

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             +PN   L SV+ A   L  +V GK  HG  +++  +    V  AL+DMYAKCG +  +
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              F  I    V+  + MI   A+      + +LF  ++   + PN+ +   VL AC++ 
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
             +D G Q + +   K G   D      ++D   +   +D + K+  S++   D   + W
Sbjct: 378 VQLDFGKQ-IHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR---DANEVSW 433

Query: 405 GTLL 408
            T++
Sbjct: 434 NTIV 437



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 162/327 (49%), Gaps = 25/327 (7%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C +++ L     +H+  +K G  S+ F  N L++ Y +      + ++F  + + N 
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ +++ G+   G  + AL +F +M    +   + T+++V++AC+  A +    QIH  
Sbjct: 431 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 490

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           IE   F  + V+ +SL+D Y KC  +  A +VF  +  R+++SW +II  +A + Q  +A
Sbjct: 491 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADA 550

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL-- 271
           LE+F   N +S    N     ++++ C+S     +G V HG+ +      +  +  ++  
Sbjct: 551 LELFDRMN-KSNVESNDITFVALLSVCSS-----TGLVNHGLSLFDSMRIDHGIKPSMEH 604

Query: 272 ----VDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGA---AKYGLGRFSLDLFNEMI 323
               V +  + G +N + +    I S PS + + +++          LGRFS +   E  
Sbjct: 605 YTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE-- 662

Query: 324 SRGIKPND-VTFVGVLHACSHSGLVDE 349
              I+P D  T+V + +  + +G +D+
Sbjct: 663 ---IEPQDETTYVLLSNMYAAAGSLDQ 686



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           A  +  C + G    G+  HG VVR G     +   A+ L++MY K G +  + ++F+R+
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNE---------------MISRGIKPNDVTFVG 336
              ++V++ +++   A+ G    +  LF                 M+   I  +     G
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 337 VLHACS------HSGLVDEGIQHLDSMYRKYGIIPDAKH 369
            +H+C+      H+  V  G+  +D+ Y    ++ DA+H
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGL--IDA-YSLCSLVSDAEH 218


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 338/578 (58%), Gaps = 19/578 (3%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLE 90
           L  C  L S      +HS  L+ G  S++     L++ Y +    Q    AR++F+ M +
Sbjct: 262 LSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPK 321

Query: 91  PNVVSYTSLMAGYINMG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            NV+++T+L++GY+  G Q    ++LF KML   + PN  T+++++KAC+ L D  +G+Q
Sbjct: 322 HNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQ 381

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IHTH          VV ++LV MY +   ++ AR  FD +  +N+VS++        N  
Sbjct: 382 IHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSG-------NLD 434

Query: 210 GHEALEMFREFNYQSRDRP-NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           G      ++++  +  +   +     S+I+A AS+G L  G+  H + +++G   +  + 
Sbjct: 435 GDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIG 494

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++LV MY++CG +  + +VF+ +++ +V+++TSMI G AK+G    +L+LF++MI+ G+K
Sbjct: 495 NSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVK 554

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PNDVT++ VL ACSH+GLV EG +H   M + +G+IP  +HY C+VD+LGR+G +++A  
Sbjct: 555 PNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALD 614

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
               +    D   L+W TLL A + H  +DI   A+N +I+   Q    YV LSN YA A
Sbjct: 615 FINEMPCQVDA--LVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEA 672

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W+ V  +RS M+   + KE G SW+ + +  + F AG+    +  E+ + L  L R++
Sbjct: 673 GLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREI 732

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI-TIRIMKNLRMCRD 567
           K  GYV   T +V  D+ DE +E  +  HSE++A+AFGLIS       IRI KNLR+C D
Sbjct: 733 KVMGYV-PDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVD 791

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   K +S    R+ ++RD NRFH  ++G CSCG++W
Sbjct: 792 CHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 181/352 (51%), Gaps = 33/352 (9%)

Query: 48  SVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMA 101
           ++   +L++G L  ++    N L+  Y +      AR +FD M  P    ++VS+T++ +
Sbjct: 68  ALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGM--PVGLRDLVSWTAMAS 125

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGF 159
                G    AL LF + L   + PN FT     +AC  S L  L  G  +    +   +
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFW 185

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
             ++ V  +L+DM+ K  D+   RRVFD +  R VV WT +I  +AQ+    EA+E+F +
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC- 278
              ++  +P+Q+ L+S+++AC  LG    G+  H + +R G E +  V+  LVDMYAK  
Sbjct: 246 M-LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSH 304

Query: 279 --GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG-LGRFSLDLFNEMISRGIKPNDVTFV 335
              S++ + +VFNR+   +V+ +T+++ G  + G      + LF +M++ GI+PN +T+ 
Sbjct: 305 NGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYS 364

Query: 336 GVLHACSHSGLVDEGIQ------------------HLDSMYRKYGIIPDAKH 369
            +L AC++ G  D G Q                   L SMY + G I +A+H
Sbjct: 365 SMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARH 416



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 53  ILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           + K GF     ++   LI+ + +       R++FD + E  VV +T L+  Y   G    
Sbjct: 179 VFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDE 238

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           A+ LF  ML N   P+++T ++++ AC+ L     G+Q+H+     G + +  V   LVD
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVD 298

Query: 172 MYGKCND---VDGARRVFDLMGCRNVVSWTSIIVAHAQ-NAQGHEALEMFREFNYQSRDR 227
           MY K ++   +  AR VF+ M   NV++WT+++  + Q  +Q ++ + +F +       R
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKM-LNEGIR 357

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN    +S++ ACA+LG   SG+  H   V+S     +VV +ALV MYA+ GS+  +   
Sbjct: 358 PNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHA 417

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+++   ++V+++  + G  +    +   D   E +  GI  +  TF  ++ A +  G++
Sbjct: 418 FDQLYEKNMVSFSGNLDGDGRSNTYQ---DYQIERMELGI--STFTFGSLISAAASVGML 472

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            +G Q L ++  K G   D      +V M  R G L +A ++   +    D   + W ++
Sbjct: 473 TKG-QRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMN---DHNVISWTSM 528

Query: 408 LSASRLHGRVDIAVEASNQLIES 430
           +S    HG    A+E  + +I +
Sbjct: 529 ISGLAKHGYAARALELFHDMIAA 551



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 10/283 (3%)

Query: 143 DLITGKQIHTHIETFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWT 198
           D+  G+ +  H+   G   + + VV +SL+ +Y KC+ V  AR VFD M  G R++VSWT
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC--ASLGRLVSGKVAHGVV 256
           ++    ++N    EAL +F E   +    PN   L +   AC  + L  L  G V  G+V
Sbjct: 122 AMASCLSRNGAEAEALRLFGE-TLEEGLLPNAFTLCAATQACFASELFHLAGGAVL-GLV 179

Query: 257 VRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
            + G    DV V  AL+DM+AK G +    +VF+ +   +VV +T +I   A+ G    +
Sbjct: 180 FKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEA 239

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           ++LF +M+  G +P+  T   +L AC+  G    G Q L S+  + G+  D+     +VD
Sbjct: 240 VELFLDMLENGFQPDQYTLSSMLSACTELGSFRLG-QQLHSLALRLGLESDSCVSCGLVD 298

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           M  ++      +   +     P    + W  LLS     G  D
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQD 341


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 299/534 (55%), Gaps = 5/534 (0%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +      AR +FD+M   +VVS+T L+AGY     P  A+ L   ML     PN FTF
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
            +++KA         G+Q+H     + +  ++ V S+L+DMY +C  +D A  VFD +  
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           +N VSW ++I   A+ A G   L  F E              +S+ +A A +G L  G+ 
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFG-ATHFTYSSMFSAFARIGALEQGRW 180

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            H  +++SG +    V + ++ MYAK GS+  + KVF+R+    +VT+ +M+   A+YGL
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
           G+ ++  F E+   GI+ N +TF+ VL ACSH GLV EG  + D M + Y + P+  HY 
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYV 299

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
             VD+LGR G L EA      + ++P     +WG LL A R+H    +   A++ + E +
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAA--VWGALLGACRMHKNAKMGQYAADHVFELD 357

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
                  V L N YA  G+W +   +R  MK TG+ KEP CSWV+I +  + F A +   
Sbjct: 358 PDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTH 417

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
            +  ++  +  E+  ++K+ GYV   T  V + + ++ RE  +  HSE++ALAF LI++P
Sbjct: 418 PKSGDIYRMWEEINMRIKKAGYVP-NTAHVLLHINEQERETKLKYHSEKIALAFALINMP 476

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            G +IRIMKN+R+C DCH  FK +S + +R+ VVRD NRFHHF  GSCSCGD+W
Sbjct: 477 AGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 1/179 (0%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC  V  AR VFD M  R+VVSWT +I  +AQN    EA+ +  +   ++R RPN  
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM-LRARFRPNGF 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
              S++ A  + G    G+  H + V+   + +  V SAL+DMYA+C  ++ +  VF+R+
Sbjct: 60  TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
            + + V++ ++I G A+   G  +L  F EM   G      T+  +  A +  G +++G
Sbjct: 120 VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 178



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 63/127 (49%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++KSG     F  N ++  Y +      AR++FD M + ++V++ +++      G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+  F+++    +  N+ TF +V+ ACS    +  GK     ++ +  Q  +    S
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVS 300

Query: 169 LVDMYGK 175
            VD+ G+
Sbjct: 301 FVDLLGR 307


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/481 (39%), Positives = 300/481 (62%), Gaps = 5/481 (1%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+E T  +++ AC+ L +L  GK +H++ +  G   NL V ++++DMY KC+D++ A+ V
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ +  ++V+SWTS++   A++    E+L +FR+     +  P++  L  V++ACA  G 
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLH-KIEPDEITLVGVLSACAQTGA 127

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  GK  H ++ +     + V+ +ALVDMYAKCGS++ + +VF R+   +V T+ +MI G
Sbjct: 128 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGG 187

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G G  ++ LF++M    + P+DVTF+ +L ACSH+GLVDEG+    +M  K+ I P
Sbjct: 188 LAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEP 247

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY CVVD+L R  ++D+A    +++ +  +   +LW TLL A R  G  D+A +   
Sbjct: 248 RMEHYGCVVDLLCRARKVDDALAFIENMPIKANS--VLWATLLGACRSGGHFDLAEKIXR 305

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           ++IE        YV LSN YA   +W++   LR +MK  GI K PGCSW+E+    + F 
Sbjct: 306 RVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFV 365

Query: 486 AGNALFERGSEVLSLLRELERKMK-ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
           AG+    +  ++ +++ E+ R++  + G+V G   ++F D+E+E +E  + LHSE+LA+A
Sbjct: 366 AGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLF-DIEEEEKEHSLFLHSEKLAIA 424

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
            GLIS P G  IRI+KNLR+C DCH   K+ S +  R+ V RD +RFHHF+ GSCSC DF
Sbjct: 425 LGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDF 484

Query: 605 W 605
           W
Sbjct: 485 W 485



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 114/201 (56%), Gaps = 4/201 (1%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RP++  + S++ ACA LG L  GK+ H      G + N  V +A++DMY KC  +  + +
Sbjct: 8   RPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE 67

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VFNRI    V+++TSM+ G AK G  + SL LF +M    I+P+++T VGVL AC+ +G 
Sbjct: 68  VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGA 127

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +D+G +++  +  K+ I  D    T +VDM  + G +D A ++ + ++V        W  
Sbjct: 128 LDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR---NVFTWNA 183

Query: 407 LLSASRLHGRVDIAVEASNQL 427
           ++    +HG  + A+   +Q+
Sbjct: 184 MIGGLAMHGHGEDAISLFDQM 204



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 1/201 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS   + G   N    N +++ Y +    + A+++F+ + E +V+S+TS+++G    G 
Sbjct: 33  LHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 92

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            Q +L LF+KM  + + P+E T   V+ AC+    L  GK IH  I+ F    +LV+ ++
Sbjct: 93  FQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETA 152

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  +D A +VF  M  RNV +W ++I   A +  G +A+ +F +     +  P
Sbjct: 153 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQME-XDKLMP 211

Query: 229 NQHMLASVINACASLGRLVSG 249
           +     +++ AC+  G +  G
Sbjct: 212 DDVTFIALLCACSHAGLVDEG 232


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 315/532 (59%), Gaps = 24/532 (4%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR++FDEM E +V+++T+++ GY    +   A  +F  M      P +    T +   SM
Sbjct: 191 AREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM------PEK----TEVSWTSM 240

Query: 141 LADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           L   +   +I    E F       ++ C++++   G+  ++  ARRVFD M  RN  SW 
Sbjct: 241 LMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQ 300

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  H +N    EAL++F     Q   RP    L S+++ CASL  L  GK  H  +VR
Sbjct: 301 TVIKIHERNGFELEALDLFILMQKQGV-RPTFPTLISILSVCASLASLHHGKQVHAQLVR 359

Query: 259 SGCEFN-DV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
             C+F+ DV VAS L+ MY KCG +  S  +F+R  +  ++ + S+I G A +GLG  +L
Sbjct: 360 --CQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEAL 417

Query: 317 DLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
            +F EM +S   KPN+VTFV  L ACS++G+V+EG++  +SM   +G+ P   HY C+VD
Sbjct: 418 KVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVD 477

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           MLGR GR +EA ++  S+ V+PD    +WG+LL A R H ++D+A   + +LIE   + +
Sbjct: 478 MLGRAGRFNEAMEMIDSMTVEPDAA--VWGSLLGACRTHSQLDVAEFCAKKLIEIEPENS 535

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG--NALFER 493
             Y+ LSN YA  G W +V  LR  MK   + K PGCSW E+ ++ +AF  G  N+  E+
Sbjct: 536 GTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQ 595

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
            S +L +L EL+  ++E GY          DV++E +   +  HSERLA+A+ L+ + +G
Sbjct: 596 ES-ILKILDELDGLLREAGY-NPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEG 653

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I IR+MKNLR+C DCH   K+IS + ER+ ++RD NRFHHFRNG CSC D+W
Sbjct: 654 IPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 167/383 (43%), Gaps = 77/383 (20%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N L++ Y++  +   AR++FD M E NVVS+T+L+ GY++ G+  +A  LF KM 
Sbjct: 78  NIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP 137

Query: 121 GNLVWPNEFTFATVI----------KAC---------------SMLADLITGKQIHTHIE 155
                 N+ ++  ++           AC               SM+  L    ++    E
Sbjct: 138 EK----NKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEARE 193

Query: 156 TFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
            F    + +++  +++V  YG+ N VD AR++FD+M  +  VSWTS+++ + QN +  +A
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
            E+F            + M    + AC                            +A++ 
Sbjct: 254 EELF------------EVMPVKPVIAC----------------------------NAMIS 273

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
              + G +  + +VF+ +   +  ++ ++I    + G    +LDLF  M  +G++P   T
Sbjct: 274 GLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPT 333

Query: 334 FVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
            + +L  C+    +  G Q H   +  ++ +  D    + ++ M  + G L ++  +   
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDV--DVYVASVLMTMYIKCGELVKSKLIFDR 391

Query: 393 IQVDPDGGPLLWGTLLSASRLHG 415
               P    ++W +++S    HG
Sbjct: 392 F---PSKDIIMWNSIISGYASHG 411



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 180/412 (43%), Gaps = 69/412 (16%)

Query: 49  VHSEILKSGFLSNTF---TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           + S+IL     S T    T N  I    R+ K   AR+LFD     ++ S+ S++AGY  
Sbjct: 1   MKSQILLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFA 60

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
              P+ A  LF +M      P+                                  N++ 
Sbjct: 61  NLMPRDARKLFDEM------PDR---------------------------------NIIS 81

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            + LV  Y K  ++D AR+VFDLM  RNVVSWT+++  +  N +   A  +F +      
Sbjct: 82  WNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM----- 136

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYS 284
             P ++ ++  +     +G L  G++     +       D +A ++++    K G V+ +
Sbjct: 137 --PEKNKVSWTV---MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEA 191

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            ++F+ +S  SV+T+T+M+ G  +      +  +F+ M  +     +V++  +L     +
Sbjct: 192 REIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQN 247

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G +++  +  + M  K  I  +A     ++  LG+ G + +A ++  S++   D     W
Sbjct: 248 GRIEDAEELFEVMPVKPVIACNA-----MISGLGQKGEIAKARRVFDSMKERNDAS---W 299

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQ-VANAYVTLSNTYALAGEWENVH 455
            T++   ++H R    +EA +  I   +Q V   + TL +  ++     ++H
Sbjct: 300 QTVI---KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLH 348



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 9/198 (4%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVR 74
           + +Q  R +  T    I  L  C  L SL     VH+++++  F  + +  + L+  Y++
Sbjct: 322 MQKQGVRPTFPT---LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378

Query: 75  LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFAT 133
             +   ++ +FD     +++ + S+++GY + G  + AL +F +M L     PNE TF  
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 134 VIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
            + ACS    +  G +I+  +E+ FG +      + +VDM G+    + A  + D M   
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE 498

Query: 193 -NVVSWTSIIVAHAQNAQ 209
            +   W S++ A   ++Q
Sbjct: 499 PDAAVWGSLLGACRTHSQ 516


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 321/546 (58%), Gaps = 12/546 (2%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            ++ + N ++ CY+R    + A   F++M   ++ S+ +L++G+   GQ Q A  LF  M
Sbjct: 134 PDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM 193

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                  N  +++ +I       DL   ++++ ++   G + ++VV ++++  Y K   V
Sbjct: 194 PEK----NGVSWSAMISGYVEHGDLEAAEELYKNV---GMK-SVVVETAMLTGYMKFGKV 245

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           + A R+F  M  +N+V+W S+I  + +N +  + L++F+    +SR RPN   L+SV+  
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLG 304

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C++L  L  G+  H +V +S    +    ++L+ MY KCG ++ + K+F  +    V+T+
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITW 364

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G A++G GR +L LF++M +  +KP+ +TFV V+ AC+H+G VD G+Q+  SM +
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           ++GI     HYTCV+D+LGR GRLDEA  L K +   P     ++GTLL A R+H  +D+
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAA--IYGTLLGACRIHKNLDL 482

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           A  A+  L+  +   A  YV L+N YA   +W+ V  +R  MK   + K PG SW+EI+ 
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            T+ F + + L    + +   L EL+ KMK  GYV         DVE+E +E+++  HSE
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYV-PDLEFALHDVEEEHKEKLLLWHSE 601

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL+    G  IR+ KNLR+C DCH   K IS I +R+ +VRD  RFHHFRNG C
Sbjct: 602 KLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFC 661

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 662 SCGDYW 667



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 131/254 (51%), Gaps = 3/254 (1%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           E+ K+  + +      ++  Y++  K ++A ++F  M   N+V++ S++AGY+   + + 
Sbjct: 219 ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
            L +F+ M+ + V PN  + ++V+  CS L+ L  G+Q+H  +       +   C+SL+ 
Sbjct: 279 GLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLIS 338

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC D+D A ++F  M  ++V++W ++I  +AQ+  G +AL +F +    +  +P+  
Sbjct: 339 MYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTM-KPDWI 397

Query: 232 MLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
              +VI AC   G +  G +    +    G E   V  + ++D+  + G ++ +  +   
Sbjct: 398 TFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457

Query: 291 IS-NPSVVTYTSMI 303
           +   P    Y +++
Sbjct: 458 MPFTPHAAIYGTLL 471



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 61/317 (19%)

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA---- 208
           H++T     ++V  +  +  + +  D++ AR VF+ M  R  V+W +++  + + A    
Sbjct: 66  HVDTAS---DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVK 122

Query: 209 QGHEALEMFREFNYQS---------RDRPNQHMLA--------------SVINACASLGR 245
           + HE  +   E +  S         R    +  LA              ++I+  A  G+
Sbjct: 123 EAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 246 ---------------------LVSGKVAHGVVVRSGCEFND------VVASALVDMYAKC 278
                                ++SG V HG +  +   + +      VV +A++  Y K 
Sbjct: 183 MQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKF 242

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G V  ++++F R++  ++VT+ SMI G  +       L +F  MI   ++PN ++   VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
             CS+   +  G Q +  +  K  +  D    T ++ M  + G LD A+KL   +   P 
Sbjct: 303 LGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM---PR 358

Query: 399 GGPLLWGTLLSASRLHG 415
              + W  ++S    HG
Sbjct: 359 KDVITWNAMISGYAQHG 375



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 40  CKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C +L +L     +H  + KS    +T     LI+ Y +      A +LF EM   +V+++
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITW 364

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            ++++GY   G  + AL LF KM    + P+  TF  VI AC+    +  G Q    ++ 
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 157 -FGFQYNLVVCSSLVDMYGKCNDVDGA 182
            FG +   V  + ++D+ G+   +D A
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEA 451


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 321/551 (58%), Gaps = 7/551 (1%)

Query: 57  GF-LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL 115
           GF +S+ F    +++ Y +  K + AR +FD +L+ +VV +T+L+ GY   G    AL +
Sbjct: 131 GFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEV 190

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           F+ M+G+ + PNE+T A+V+ +C  L DL+ GK IH  +   G +  +   +SL+ MY K
Sbjct: 191 FEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSK 250

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           CN V+ + +VF+ +   + V+WTS IV   QN +   AL MFRE   +    PN    +S
Sbjct: 251 CNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREM-IRCSISPNHFTFSS 309

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           +++AC+SL  L +G+  H V V+ G + N  V +AL+ +Y KCG+V  +  VF  ++   
Sbjct: 310 ILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELD 369

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           VV+  +MI   A+ G G  +L+LF  M   G KPN VTF+ +L AC+++GLV+EG Q   
Sbjct: 370 VVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFS 429

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            +   + I     HYTC++D+LGR  R +EA  L +  + +PD   + W TLL+A ++HG
Sbjct: 430 LIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPD--VIQWRTLLNACKIHG 486

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            V++A +   ++++   +    ++ L+N YA AG+W+NV  ++S  +   + K P  SWV
Sbjct: 487 EVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWV 546

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           +I  + + F AG+    R  E+  +L EL  K+   GY    T  V  D+E+E +   + 
Sbjct: 547 DIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGY-NPDTKFVLQDLEEEKKISALY 605

Query: 536 LHSERLALAFGLI-SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
            HSE+LA+AF L  +  K   IRI KNLR+C DCH   K +S +  RD + RD  RFHHF
Sbjct: 606 YHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHF 665

Query: 595 RNGSCSCGDFW 605
           + G CSC D+W
Sbjct: 666 KGGICSCKDYW 676



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 219/371 (59%), Gaps = 10/371 (2%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           +C+T    I Q    K L +L S+H+ ILKSG L + F  + LI+ Y++      AR+LF
Sbjct: 2   NCYTS--LIAQFTNKKSLTTLKSLHTHILKSGSLFSFFG-HKLIDGYIKCSVITEARKLF 58

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           DEM   ++V++ S+++ +++ G+ + A+ L+  ML   V P+ +TF+ + KA S +    
Sbjct: 59  DEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSR 118

Query: 146 TGKQIHTHIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
            G++ H      GF+  +  V + +VDMY K   +  AR VFD +  ++VV +T++IV +
Sbjct: 119 EGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGY 178

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            Q     EALE+F +    SR +PN++ LASV+ +C +LG LV+GK+ HG+VV+SG E  
Sbjct: 179 NQRGLDGEALEVFEDM-VGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLE-- 235

Query: 265 DVVAS--ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            VVAS  +L+ MY+KC  V  S KVFN ++  S VT+TS IVG  + G    +L +F EM
Sbjct: 236 SVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREM 295

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           I   I PN  TF  +LHACS   +++ G + + ++  K G+  +      ++ + G+ G 
Sbjct: 296 IRCSISPNHFTFSSILHACSSLAMLEAG-EQIHAVTVKLGVDGNKYVDAALIHLYGKCGN 354

Query: 383 LDEAYKLAKSI 393
           +++A  + +S+
Sbjct: 355 VEKARSVFESL 365



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 145/295 (49%), Gaps = 26/295 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++KSG  S   +   L+  Y +    + + ++F+ +   + V++TS + G +  G+
Sbjct: 225 IHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGR 284

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +IAL +F++M+   + PN FTF++++ ACS LA L  G+QIH      G   N  V ++
Sbjct: 285 EEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAA 344

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +YGKC +V+ AR VF+ +   +VVS  ++I A+AQN  GHEALE+F         +P
Sbjct: 345 LIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGH-KP 403

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA------------SALVDMYA 276
           N     S++ AC + G           +V  GC+   ++             + ++D+  
Sbjct: 404 NVVTFISILLACNNAG-----------LVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLG 452

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +      +  +     NP V+ + +++     +G    +     +M+ +   P D
Sbjct: 453 RAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQA--PRD 505


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/582 (36%), Positives = 341/582 (58%), Gaps = 13/582 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L  L     +H   +K+GF       N +I+ Y +  +   A  +F+ M 
Sbjct: 76  FSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMP 135

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             N++S+ +++AGY   G  + AL+LFQKM     + +EFTF + +KACS L  +  G Q
Sbjct: 136 VRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQ 195

Query: 150 IHTHIETFGFQY--NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           IH  + T GF Y  N  V  +L+D+Y KC  +  ARRVF  +  ++V+SWT++I+ +AQ 
Sbjct: 196 IHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQE 255

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               E++E+FR+   +S  + +  +L+S++   A    +  GK  H   ++     +  V
Sbjct: 256 GNLAESMELFRQLR-ESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISV 314

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            ++++DMY KCG +N ++++F+ +   +V+++T MI G  K+GLG+ ++ LF+EM     
Sbjct: 315 CNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDST 374

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +P+DVT++ VL  CSHSGLV++G ++   +   +GI    +HY C+VD+LGR GRL EA 
Sbjct: 375 EPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAK 434

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
            L  S+ ++ + G  +W TLLSA R+HG +++  E    L+  + +    YV +SN YA 
Sbjct: 435 NLVDSMPLEANVG--IWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYAD 492

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           AG W+    +R  +K   + KE G SWVEI  + + FY G+       ++  +L+E+ER+
Sbjct: 493 AGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERR 552

Query: 508 MKER-GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI--SIPKG-ITIRIMKNLR 563
           MKE  GYV G       DVE+E++ + + +HSE+LA+   L+   + +G   IR+ KNLR
Sbjct: 553 MKEELGYVYG-VKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLR 611

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH+  K +S I+   FVVRD NRFH F +G CSC D+W
Sbjct: 612 VCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 192/362 (53%), Gaps = 9/362 (2%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           GF  +    N LI  Y +  +  VA  +FD ML+ NVVS+T+LM G+I  G P  +LLLF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
            KM  + V PN+FTF+T +KAC +L  L  G+QIH      GF    VV +S++DMY KC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             ++ A  +F++M  RN++SW ++I  +       +AL +F++   +     ++    S 
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQ-EVGGFLDEFTFTST 180

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEF--NDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           + AC+ LG +  G   H  ++  G  +  N  VA AL+D+Y KCG +  + +VF+ I   
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-H 353
            V+++T++I+G A+ G    S++LF ++    I+ +      ++   +   LV +G Q H
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMH 300

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
             ++    G+  D      ++DM  + G ++EA +L   +   P    + W  +++    
Sbjct: 301 AFAIKVPSGV--DISVCNSILDMYLKCGMINEAERLFSEM---PARNVISWTVMITGYGK 355

Query: 414 HG 415
           HG
Sbjct: 356 HG 357


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/630 (33%), Positives = 342/630 (54%), Gaps = 77/630 (12%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYV-----RLKKTQVARQLFDEMLEPNVVSYTSLM 100
           L   H+ IL++G L +++    L+  Y      R    + + ++FD + +PNV  +  ++
Sbjct: 51  LKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 110

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF- 159
              I   +P  A+LL+ +M+     PN++T+  V+KACS    +  G Q+H H+   G  
Sbjct: 111 KVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLG 170

Query: 160 -------------------------------QYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
                                          + + V  ++++D Y +  +V+ AR +F+ 
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEG 230

Query: 189 MGCRNVVS--------------------------------WTSIIVAHAQNAQGHEALEM 216
           M  R+++S                                W+++I  + Q     EALE+
Sbjct: 231 MPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEI 290

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F +   + + RP + +L SV++ACA+LG L  G+  H    R+  + + V+ ++LVDMYA
Sbjct: 291 FHQMQ-KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 349

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG ++ + +VF ++SN  V ++ +MI G A +G    ++DLF++M    I PN++TFVG
Sbjct: 350 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVG 406

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL+AC+H GLV +G+   +SM ++YG+ P  +HY C+VD+LGR G L EA K+  SI  +
Sbjct: 407 VLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 466

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           P   P +WG LL A R HG V++       L+E   Q +  Y  LSN YA AG WE V  
Sbjct: 467 PT--PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGE 524

Query: 457 LRSEMKRTGIHKEPGCSWVEI-RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
           +R  MK  GI   PG S +++ R + + F  G+    +  ++  +L +++ +++  GY  
Sbjct: 525 VRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEP 584

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
             + ++F D+++E +E  V  HSE+LA+ FGLI+   G TIRI+KNLR+C DCH   KLI
Sbjct: 585 DPSQVLF-DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLI 643

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S +  R+ +VRD  R+HHFRNG+CSC DFW
Sbjct: 644 SQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 334/563 (59%), Gaps = 10/563 (1%)

Query: 49  VHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H   L+SG F S+ +  + L++ Y    +   AR+ FDE+  PN V  T++ +G +   
Sbjct: 110 LHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNN 169

Query: 108 QPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
                L +F+ M+  G+    +E      + A + + D      IH  +   G      V
Sbjct: 170 LVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGV 229

Query: 166 CSSLVDMYGKC--NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            ++++D Y K   +D+  AR++FD+M  R+VVSW ++I  +AQN    EAL ++ +    
Sbjct: 230 ANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSKMLIV 288

Query: 224 SRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
             D R N   L++V+ ACA  G + +GK  H  VVR G E N  V +++VDMY+KCG V 
Sbjct: 289 GGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVE 348

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + K F +I   +++++++MI G   +G G+ +L +F +M   G+KPN +TF+ VL ACS
Sbjct: 349 MAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACS 408

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GL+ EG    ++M  ++GI P  +HY C+VD+LGR G LDEAY L K ++V PD    
Sbjct: 409 HAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAA-- 466

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           LWG LLSA R++  V++A   + +L E +   +  YV LSN YA AG W+ V  +R  +K
Sbjct: 467 LWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVK 526

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             GI K PG S VE++ +T+ FY G+    +  E+ + L +L  ++ + GYV   TG V 
Sbjct: 527 TRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYV-PNTGSVL 585

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D++ E RE ++ +HSE+LA+AF L++  +G  I ++KNLR+C DCH   K+I+ +  R+
Sbjct: 586 HDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGRE 645

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            ++RD+ RFHHF++G CSCGD+W
Sbjct: 646 IIIRDLKRFHHFKDGLCSCGDYW 668


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 334/561 (59%), Gaps = 14/561 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +HS  L+ G +S++     L++ Y +LK     + AR++F  M   NV+S+T+L++GY+ 
Sbjct: 268 LHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQ 327

Query: 106 MG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
            G Q    + LF++ML   + PN  T++ ++KAC+ L+D  +G+QIH H+      +  V
Sbjct: 328 SGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNV 387

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++LV MY +   ++ AR+ FD +   N++S +  +     NA     +E         
Sbjct: 388 VGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMD------ 441

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
            D  +    AS+++A AS+G L  G+  H + +++G   +  ++++LV MYA+CG +  +
Sbjct: 442 -DGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDA 500

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            + F+ + + +V+++TS+I G AK+G  + +L +F++MI  G+KPNDVT++ VL ACSH 
Sbjct: 501 CRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHV 560

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLV EG +H  SM + +G++P  +HY C+VD+L R+G ++EA +    +    D   L+W
Sbjct: 561 GLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADA--LVW 618

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            TLLSA R +G  +I   A+N +I    +    YV LSN YA AG W+ V  +RS M+  
Sbjct: 619 KTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDK 678

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            + KE G SW+++ +  + F AG+       ++ + L  L R++K+ GYV   T +V  D
Sbjct: 679 NLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYV-PDTSIVLHD 737

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           + +E +E+ +  HSE++A+AFGLI+      +RI KNLR+C DCH   K IS    R+ +
Sbjct: 738 MSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREII 797

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           +RD NRFH  ++G CSCG++W
Sbjct: 798 LRDSNRFHRMKDGICSCGEYW 818



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 188/381 (49%), Gaps = 16/381 (4%)

Query: 53  ILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           +LK+GF     ++   LI+ + R      A+++FD ++E   V +T L+  Y+  G    
Sbjct: 170 VLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASK 229

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
            + LF  ML +   P+ ++ +++I AC+ L  +  G+Q+H+     G   +  V   LVD
Sbjct: 230 VVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVD 289

Query: 172 MYGKCN---DVDGARRVFDLMGCRNVVSWTSIIVAHAQNA-QGHEALEMFREFNYQSRDR 227
           MY K      ++ AR+VF  M   NV+SWT++I  + Q+  Q +  + +FRE   +S  R
Sbjct: 290 MYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESI-R 348

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN    ++++ ACA+L    SG+  H  V+++     +VV +ALV MYA+ G +  + K 
Sbjct: 349 PNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKA 408

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+++   ++++ +  +            ++  ++ +S        TF  +L A +  GL+
Sbjct: 409 FDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVS------TFTFASLLSAAASVGLL 462

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
            +G Q L ++  K G   D      +V M  R G L++A +    ++   D   + W ++
Sbjct: 463 TKG-QKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMK---DHNVISWTSI 518

Query: 408 LSASRLHGRVDIAVEASNQLI 428
           +S    HG    A+   + +I
Sbjct: 519 ISGLAKHGYAKQALSMFHDMI 539



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 178/347 (51%), Gaps = 27/347 (7%)

Query: 48  SVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYIN 105
           ++H  +L+S  L ++    N L+  Y +    + AR++FD+M    ++VS+T++ +    
Sbjct: 61  ALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLAR 120

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGFQYNL 163
            G  + +L L  +ML   + PN FT     +AC    L  L  G  +   ++T  +  ++
Sbjct: 121 NGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDV 180

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +L+DM+ +  D+  A+RVFD +  R  V WT +I  + Q     + +E+F      
Sbjct: 181 SVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHM-LD 239

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG---S 280
               P+ + ++S+I+AC  LG +  G+  H V +R G   +  V+  LVDMYAK     S
Sbjct: 240 DGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERS 299

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS-LDLFNEMISRGIKPNDVTFVGVLH 339
           + ++ KVF  +   +V+++T++I G  + G+   + + LF EM++  I+PN +T+  +L 
Sbjct: 300 MEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLK 359

Query: 340 ACS-----------HSGLVDEGIQHLD-------SMYRKYGIIPDAK 368
           AC+           H+ ++   I H++       SMY + G + +A+
Sbjct: 360 ACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEAR 406



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 19/322 (5%)

Query: 132 ATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM- 189
           A ++ + +   DL  G+ +H  +  +     + VV +SL+ MY KC  V+ ARRVFD M 
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC 103

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC--ASLGRLV 247
           G R++VSWT++    A+N    E+L +  E       RPN   L +   AC    L RL 
Sbjct: 104 GVRDLVSWTAMASCLARNGAERESLRLLGEMLELGL-RPNAFTLCAAARACFPQELFRL- 161

Query: 248 SGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           +G V  G V+++G    DV V  AL+DM+A+ G +  + +VF+ +   + V +T +I   
Sbjct: 162 AGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRY 221

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
            + G     ++LF  M+  G +P+  +   ++ AC+  G V  G Q L S+  + G++ D
Sbjct: 222 VQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLG-QQLHSVALRLGLVSD 280

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
           +     +VDM  +  +++ + + A+ + +  P    + W  L+S     G V   V+ +N
Sbjct: 281 SCVSCGLVDMYAKL-KMERSMEHARKVFKTMPRHNVMSWTALIS-----GYVQSGVQENN 334

Query: 426 QLI----ESNQQVANAYVTLSN 443
            +       N+ +   ++T SN
Sbjct: 335 VMALFREMLNESIRPNHITYSN 356


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/568 (36%), Positives = 328/568 (57%), Gaps = 13/568 (2%)

Query: 42  HLISLASVHSEILKSGF----LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYT 97
            L SL  +H    +  F    LSN F L      Y +      A ++F  + +  V S+ 
Sbjct: 366 QLRSLKELHGYSFRHCFQHVELSNAFIL-----AYAKCGALNSAEKVFHGIGDKTVSSWN 420

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           +L+ G+   G P+ AL L  +M  +   P+ FT ++++ AC+ L  L  GK+IH ++   
Sbjct: 421 ALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRN 480

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G + +  V +SL+  Y  C     AR +FD M  +N+VSW ++I  ++QN   +E+L +F
Sbjct: 481 GLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALF 540

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           R+ +     + ++  + SV  AC+ L  L  GK AHG V+++    +  V  +++DMYAK
Sbjct: 541 RK-SLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAK 599

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
            G +  S KVF+ + + +V ++ ++IV    +G G+ +++L+  M   G  P+  T++G+
Sbjct: 600 SGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGI 659

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L AC H+GLV+EG+++   M     I P  +HY C++DML R GRLD+A +L   +  + 
Sbjct: 660 LMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEA 719

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           D    +W +LL + R  G ++I  + + +L+E     A  YV LSN YA  G+W+ V  +
Sbjct: 720 DN--RIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRV 777

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R  MK  G+ K+ GCSW+E+  + Y+F  G++L  + +E+  + R LE ++ E GY    
Sbjct: 778 RQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGY-KPN 836

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           T  V  +V +E + +I+  HSE+LA++FGL+   KG T+RI KNLR+C DCH+  KLIS 
Sbjct: 837 TSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISK 896

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            VER+ VVRD  RFHHFR+G CSC D+W
Sbjct: 897 AVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 163/312 (52%), Gaps = 7/312 (2%)

Query: 37  LQEC---KHLISLASVHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPN 92
           LQ C   K + +   +H  +  S    N + LN  LI  Y        +R +FD M   N
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIH 151
           ++ + +L++GY   G     + +F  ++ +  + P+ FTF +VIKAC  + D+  G+ IH
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G   ++ V ++LV MYGKC  VD A +VFD M   N+VSW S+I A ++N    
Sbjct: 170 GMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSR 229

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           ++ ++  E   +    P+   + +++  CA  G +  G   HG+ V+ G     +V +A+
Sbjct: 230 DSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAM 289

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKP 329
           V MY+KCG +N +   F + +N +VV++ +MI   +  G    + +L  EM  +G  +K 
Sbjct: 290 VYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKA 349

Query: 330 NDVTFVGVLHAC 341
           N+VT + VL AC
Sbjct: 350 NEVTILNVLPAC 361



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 189/386 (48%), Gaps = 8/386 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K G        N ++  Y +      A+  F +    NVVS+ ++++ +   G 
Sbjct: 270 IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGD 329

Query: 109 PQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
              A  L Q+M   G  +  NE T   V+ AC     L + K++H +     FQ+ + + 
Sbjct: 330 VNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELS 388

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++ +  Y KC  ++ A +VF  +G + V SW ++I  HAQN    +AL +  +  Y S  
Sbjct: 389 NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTY-SGQ 447

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+   ++S++ ACA L  L  GK  HG V+R+G E +  V ++L+  Y  CG  + +  
Sbjct: 448 QPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARV 507

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+R+ + ++V++ +MI G ++ GL   SL LF + +S GI+ +++  V V  ACS    
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA 567

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G +       K     DA     ++DM  ++G + E+ K+   ++   D     W  
Sbjct: 568 LRLG-KEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLK---DKNVASWNA 623

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQ 432
           ++ A  +HG    A+E   ++ +  Q
Sbjct: 624 IIVAHGIHGHGKEAIELYERMKKVGQ 649



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 179/360 (49%), Gaps = 9/360 (2%)

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN---EFTFATVIKACSMLADLIT 146
           + N  S+   +A          AL+L Q    N  + +   +     +++AC    D+ T
Sbjct: 2   QTNRPSFLQEIAALCETDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIET 61

Query: 147 GKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
           G+++H  + ++  ++ + V+ + L+ MY  C     +R VFD M  +N++ W +++  + 
Sbjct: 62  GRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYT 121

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           +N    + +++F +    +  +P+     SVI AC  +  +  G+V HG+V++ G   + 
Sbjct: 122 RNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDV 181

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-S 324
            V +ALV MY KCG+V+ + KVF+ +   ++V++ SMI   ++ G  R S DL  EM+  
Sbjct: 182 FVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGE 241

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G+ P+ VT V +L  C+  G VD G+  +  +  K G+  +      +V M  + G L+
Sbjct: 242 EGLLPDVVTVVTILPVCAGEGEVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLN 300

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           EA     S   + +   + W T++SA  L G V+ A     ++    +++    VT+ N 
Sbjct: 301 EA---QMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNV 357


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 318/562 (56%), Gaps = 34/562 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++++    N      L++ Y    +   A+++F+ M E N  S+ S++ GY   G+
Sbjct: 300 IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE 359

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            Q AL LF++M  N + P+ F+ ++++ +C  L+D   G+++H  I     +   ++   
Sbjct: 360 TQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV 419

Query: 169 LVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           LVDMY KC  +D A +V+D  +   RN   W SI+  +A      E+   F E   +S  
Sbjct: 420 LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEM-LESDI 478

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             +   + +++N                           V+ +ALVDMY+KCG++  +  
Sbjct: 479 EYDVLTMVTIVNLL-------------------------VLETALVDMYSKCGAITKART 513

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ ++  ++V++ +MI G +K+G  + +L L+ EM  +G+ PN+VTF+ +L ACSH+GL
Sbjct: 514 VFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGL 573

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V+EG++   SM   Y I   A+HYTC+VD+LGR GRL++A +  + + ++P+     WG 
Sbjct: 574 VEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVS--TWGA 631

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+H  +D+   A+ +L E + Q    YV +SN YA AG W+ V  +R  MK  G+
Sbjct: 632 LLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGV 691

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K+PG SW+EI  +   F+AG+    +  E+ + LR L  + K  GY+   T  +  +V+
Sbjct: 692 KKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYI-PDTSFILQNVK 750

Query: 527 D---EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D   E  EE +  HSERLAL+ GLIS+PK  TIR+ KNLR+C DCH   K IS I  R  
Sbjct: 751 DIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRI 810

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           + RD NRFHHF NG CSCGD+W
Sbjct: 811 IARDTNRFHHFENGKCSCGDYW 832



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 217/422 (51%), Gaps = 21/422 (4%)

Query: 23  KRSSCHTKA-------HFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCY 72
           K +S HTK         +   +Q+C    S     S+H++++ +G+  + + +  ++  Y
Sbjct: 57  KPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLY 116

Query: 73  VR---LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
            R   L     AR+LF+EM E N+ ++ +++  Y  +     A  +F +ML   V P+ F
Sbjct: 117 ARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNF 176

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TFA+ ++ C  L     GKQ+H+ +   GF+ +  V ++L+DMY KC+D +   +VFD M
Sbjct: 177 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 236

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLV 247
           G RN V+W SII A AQ    ++AL +F     +S D  +P+Q    +++  CA+     
Sbjct: 237 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQ-ESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G+  H  ++R+    N +V + LV MY++CG +NY+ ++FNR++  +  ++ SMI G  
Sbjct: 296 QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 355

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           + G  + +L LF +M   GIKP+  +   +L +C       +G + L +   +  +  + 
Sbjct: 356 QNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG-RELHNFIVRNTMEEEG 414

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                +VDM  + G +D A+K+     +  D    LW ++L+     G   +  E+ N  
Sbjct: 415 ILQVVLVDMYAKCGSMDYAWKVYDQT-IKKDRNTALWNSILAGYANKG---LKKESFNHF 470

Query: 428 IE 429
           +E
Sbjct: 471 LE 472



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 17/216 (7%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLE 90
           HF++ L+        + +  ++L    + N   L   L++ Y +      AR +FD M  
Sbjct: 469 HFLEMLE--------SDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNG 520

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N+VS+ ++++GY   G  + AL+L+++M    ++PNE TF  ++ ACS    +  G +I
Sbjct: 521 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 580

Query: 151 HTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HA 205
            T + E +  +      + +VD+ G+   ++ A+   + M     VS W +++ A   H 
Sbjct: 581 FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHK 640

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
               G  A +   E + Q+   P  +++ S I A A
Sbjct: 641 DMDMGRLAAQRLFELDPQN---PGPYVIMSNIYAAA 673


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 328/557 (58%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ +    L++ Y +      AR++F+ +   +++ + +L++G  + G 
Sbjct: 327 IHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGC 386

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              +L LF +M       N  T A V+K+ + L  +    Q+H   E  GF  +  V + 
Sbjct: 387 HGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y KCN +  A +VF+     N++++TS+I A +Q   G +A+++F E   +  + P
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLE-P 505

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  +L+S++NACASL     GK  H  +++     +    +ALV  YAKCGS+  +D  F
Sbjct: 506 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAF 565

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + + +  VV++++MI G A++G G+ +LD+F  M+   I PN +T   VL AC+H+GLVD
Sbjct: 566 SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVD 625

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E   +  SM   +GI    +HY+C++D+LGR G+LD+A +L  S+  + +    +WG LL
Sbjct: 626 EAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAA--VWGALL 683

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +ASR+H   ++   A+ +L     + +  +V L+NTYA AG W+ V  +R  MK + + K
Sbjct: 684 AASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKK 743

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP  SWVE++D+ + F  G+    R  ++ + L EL   M + GYV     +   DV+  
Sbjct: 744 EPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYV-PNLEVDLHDVDKS 802

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSERLA+AF LIS P G  IR+ KNLR+CRDCH  FK IS IV R+ ++RD+
Sbjct: 803 EKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDI 862

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF +G+CSCGD+W
Sbjct: 863 NRFHHFSDGACSCGDYW 879



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 190/365 (52%), Gaps = 11/365 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           A +H+ +LKSG L + F  NHL++ Y + +    AR++FDE  +P  VS++SL+  Y N 
Sbjct: 24  AHIHAHLLKSGLL-HAFR-NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNN 81

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             P+ AL  F+ M    V  NEF    V+K C+  A L  G Q+H    + G   ++ V 
Sbjct: 82  ALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVSTGLSGDIFVA 138

Query: 167 SSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           ++LV MYG    VD ARRVFD     RN VSW  ++ A  +N +  +A+E+F E  + S 
Sbjct: 139 NALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVW-SG 197

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            RPN+   + V+NAC     L +G+  H +VVR+G + +   A+ALVDMY+K G ++ + 
Sbjct: 198 VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAA 257

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH-ACSHS 344
            VF ++    VV++ + I G   +G  + +L+L  +M S G+ PN  T   +L       
Sbjct: 258 LVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAG 317

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
                  + +     K     D      +VDM  + G LD+A K+ + I   P    LLW
Sbjct: 318 AGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI---PRKDLLLW 374

Query: 405 GTLLS 409
             L+S
Sbjct: 375 NALIS 379



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 163/330 (49%), Gaps = 5/330 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML-EPNVVSYTSLMAGYINMG 107
           VH+  + +G   + F  N L+  Y        AR++FDE   + N VS+  +M+ ++   
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKND 181

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +   A+ LF +M+ + V PNEF F+ V+ AC+   DL  G+++H  +   G+  ++   +
Sbjct: 182 RCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTAN 241

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY K  D+  A  VF  +   +VVSW + I     +     ALE+  +    S   
Sbjct: 242 ALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMK-SSGLV 300

Query: 228 PNQHMLASVINACASLGRLVSG--KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           PN   L+S++ ACA  G       +  HG ++++  + +D +  ALVDMYAK G ++ + 
Sbjct: 301 PNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDAR 360

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF  I    ++ + ++I G +  G    SL LF  M   G   N  T   VL + +   
Sbjct: 361 KVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLE 420

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
            + +  Q + ++  K G + D+     ++D
Sbjct: 421 AISDTTQ-VHALAEKIGFLSDSHVVNGLID 449


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 314/557 (56%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  LK    +N   L  L+  Y R      A+++FDEM  P+ VS+T+L+  Y++ G 
Sbjct: 93  LHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGD 152

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ + +    N + P+ FT   V+ AC+ +ADL TG+ +    E  G   ++ V ++
Sbjct: 153 LREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATA 212

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            VD+Y KC ++  AR VFD M  ++ V+W +++  +A N    EAL++F     +   RP
Sbjct: 213 AVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGV-RP 271

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + +A  ++AC  LG L  G+ A  +V       N V+ +AL+DMYAKCGS   +  VF
Sbjct: 272 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVF 331

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            ++    ++ + +MI+G    G  + +  L  +M   G+K ND TF+G+L +C+H+GL+ 
Sbjct: 332 QQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 391

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G ++  +M + Y I P  +HY C+VD+L R G L EA++L   + +  +   ++ G LL
Sbjct: 392 DGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANA--VILGALL 449

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              ++H   ++A     QLI      +  YV LSN Y+  G WE+   LR +MK  G+ K
Sbjct: 450 GGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEK 509

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            P CSWVE   + + F  G+       ++   L EL  +MK  GY    T +V  DVEDE
Sbjct: 510 VPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGY-EPTTEVVMFDVEDE 568

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+AF L+    G TIR+ KNLR+C DCH   KLIS I  R+ +VRD 
Sbjct: 569 EKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDN 628

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH FR+GSCSC D+W
Sbjct: 629 NRFHCFRDGSCSCNDYW 645



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 3/263 (1%)

Query: 126 PNEFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+  TF   +K+ S L   L  G+Q+H          N  V +SL+ +Y +C  +  A+R
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M   + VSWT++I A+       EA+ + R   + +  RP+      V+ ACA + 
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARN-AFANGMRPDSFTAVRVLTACARVA 186

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+       + G   +  VA+A VD+Y KCG +  + +VF+++ +   V + +M+ 
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 246

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A  G  R +LDLF  M + G++P+     G L AC+  G +D G Q +  M      +
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 305

Query: 365 PDAKHYTCVVDMLGRTGRLDEAY 387
            +    T ++DM  + G   EA+
Sbjct: 306 DNPVLGTALIDMYAKCGSTAEAW 328



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 12/176 (6%)

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L +G+  H   ++     N  V ++L+ +YA+CG ++ + +VF+ + +PS V++T++I  
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITA 146

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR---KYG 362
               G  R ++ +     + G++P+  T V VL AC+    +  G    ++++R   + G
Sbjct: 147 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG----ETVWRAAEQEG 202

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS--ASRLHGR 416
           I       T  VD+  + G + +A ++   ++   D   + WG ++   AS  H R
Sbjct: 203 IAQSVFVATAAVDLYVKCGEMAKAREVFDKMR---DKDAVAWGAMVGGYASNGHPR 255


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/522 (37%), Positives = 309/522 (59%), Gaps = 7/522 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG--NLVWPNEFTFATVIKAC 138
           A  +F  +  PN+ ++ + +           A+  F   +   N   P+EFTF +V+KAC
Sbjct: 43  AALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKAC 102

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR--NVVS 196
           + LA ++ G++IH  +   GF+ NL V +SL+DMY K   +  AR +FD M  R  NVV 
Sbjct: 103 AGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVC 162

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W ++I  +AQN +  +A+E+FR         PN   L SV+ ACA LG L  GK   G +
Sbjct: 163 WNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFI 222

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            R        + +AL DMYAKCG +  + +VFN++    V++++ +I G A YG    + 
Sbjct: 223 SRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAF 282

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
             F EM+  G KPNDV F+G+L AC+H+GLV +G+   ++M ++YG+ P  +HY CVVD+
Sbjct: 283 GCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDL 342

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           L R G LD+A  +  S+ + P+   ++WG LL   R++            ++E +   + 
Sbjct: 343 LSRAGELDKAEDMISSMPMKPN--VIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSG 400

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +YV L+N Y+  G  ++    R  M+  G+ K PGCSW+E+ +  + F+ G+      ++
Sbjct: 401 SYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNK 460

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + S++REL  KMK  GY   KT LV   +++E +E+ + +HSE+LA+AFGLIS  +G TI
Sbjct: 461 IYSMIRELMWKMKLAGY-KPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTI 519

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           R++KNLR+C DCHD  K+IS IV+R+ +VRD +RFHHF++G+
Sbjct: 520 RVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 58/370 (15%)

Query: 33  FIQQLQECK---HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C    H+++   +H+ + K GF SN F  N LI+ Y +     +AR LFDEM 
Sbjct: 95  FTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMF 154

Query: 90  --EPNVVSYTSLMAGYINMGQPQIALLLFQKM--LGNLVWPNEFTFATVIKACSMLADLI 145
             + NVV + +++AGY    +   A+ +F+ M   G +V PN+ T  +V+ AC+ L  L 
Sbjct: 155 VRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVV-PNDVTLVSVLPACAHLGALD 213

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            GK I   I        L + ++L DMY KC  +  ARRVF+ M  R+V+SW+ II   A
Sbjct: 214 LGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLA 273

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
                 EA   F E      ++PN  +   ++ AC            H  +V+ G     
Sbjct: 274 MYGHADEAFGCFYEM-LDCGEKPNDVVFMGLLTAC-----------THAGLVKKGLN--- 318

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
                           N  DK +    +P V  Y  ++   ++ G     LD   +MIS 
Sbjct: 319 --------------CFNTMDKEYG--VSPKVEHYGCVVDLLSRAG----ELDKAEDMISS 358

Query: 326 -GIKPNDVTFVGVLHAC---SHSGLVDEGIQHLDSMYRKYGIIPDAKH---YTCVVDMLG 378
             +KPN + +  +L  C     SG     +QH+  +        D+ H   Y  + ++  
Sbjct: 359 MPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILEL--------DSDHSGSYVYLANVYS 410

Query: 379 RTGRLDEAYK 388
             GRLD+A K
Sbjct: 411 SMGRLDDAAK 420



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 35/279 (12%)

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
           +++A  L+   A   +V  +  +F  +++P++  + + +   A+      ++  FN  +S
Sbjct: 24  NLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVS 83

Query: 325 RGIKPN--DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
               PN  + TF  VL AC+    V  G Q + +M  K G   +      ++DM  + G 
Sbjct: 84  SPNAPNPDEFTFTSVLKACAGLAHVVNG-QKIHAMVTKQGFESNLFVRNSLIDMYFKAGY 142

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L  A  L   + V  D   + W  +++    + +   A+E    + +    V N    +S
Sbjct: 143 LLLARHLFDEMFVR-DRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVS 201

Query: 443 NTYALA-------GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
              A A       G+W +                    ++  R+     + GNAL +  +
Sbjct: 202 VLPACAHLGALDLGKWID-------------------GFISRREMALGLFLGNALADMYA 242

Query: 496 E--VLSLLRELERKMKERGYVGGKT---GLVFVDVEDEA 529
           +   ++  R +  KM+ER  +       GL      DEA
Sbjct: 243 KCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEA 281


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 314/557 (56%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  LK    +N   L  L+  Y R      A+++FDEM  P+ VS+T+L+  Y++ G 
Sbjct: 140 LHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGD 199

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ + +    N + P+ FT   V+ AC+ +ADL TG+ +    E  G   ++ V ++
Sbjct: 200 LREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATA 259

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            VD+Y KC ++  AR VFD M  ++ V+W +++  +A N    EAL++F     +   RP
Sbjct: 260 AVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGV-RP 318

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + +A  ++AC  LG L  G+ A  +V       N V+ +AL+DMYAKCGS   +  VF
Sbjct: 319 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVF 378

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            ++    ++ + +MI+G    G  + +  L  +M   G+K ND TF+G+L +C+H+GL+ 
Sbjct: 379 QQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 438

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G ++  +M + Y I P  +HY C+VD+L R G L EA++L   + +  +   ++ G LL
Sbjct: 439 DGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANA--VILGALL 496

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              ++H   ++A     QLI      +  YV LSN Y+  G WE+   LR +MK  G+ K
Sbjct: 497 GGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEK 556

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            P CSWVE   + + F  G+       ++   L EL  +MK  GY    T +V  DVEDE
Sbjct: 557 VPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGY-EPTTEVVMFDVEDE 615

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+AF L+    G TIR+ KNLR+C DCH   KLIS I  R+ +VRD 
Sbjct: 616 EKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDN 675

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH FR+GSCSC D+W
Sbjct: 676 NRFHCFRDGSCSCNDYW 692



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 3/263 (1%)

Query: 126 PNEFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+  TF   +K+ S L   L  G+Q+H          N  V +SL+ +Y +C  +  A+R
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M   + VSWT++I A+       EA+ + R   + +  RP+      V+ ACA + 
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARN-AFANGMRPDSFTAVRVLTACARVA 233

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+       + G   +  VA+A VD+Y KCG +  + +VF+++ +   V + +M+ 
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 293

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A  G  R +LDLF  M + G++P+     G L AC+  G +D G Q +  M      +
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 352

Query: 365 PDAKHYTCVVDMLGRTGRLDEAY 387
            +    T ++DM  + G   EA+
Sbjct: 353 DNPVLGTALIDMYAKCGSTAEAW 375



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 12/176 (6%)

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L +G+  H   ++     N  V ++L+ +YA+CG ++ + +VF+ + +PS V++T++I  
Sbjct: 134 LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITA 193

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR---KYG 362
               G  R ++ +     + G++P+  T V VL AC+    +  G    ++++R   + G
Sbjct: 194 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG----ETVWRAAEQEG 249

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS--ASRLHGR 416
           I       T  VD+  + G + +A ++   ++   D   + WG ++   AS  H R
Sbjct: 250 IAQSVFVATAAVDLYVKCGEMAKAREVFDKMR---DKDAVAWGAMVGGYASNGHPR 302


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 325/564 (57%), Gaps = 9/564 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L S  +++  + K  F+S+    N LIN YVR      AR++FDEM +  + ++ +++AG
Sbjct: 10  LPSAVALYERMRKKNFMSS----NILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAG 65

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            I     +  L LF++M G    P+E+T  +V    + L  +  G+QIH +   +G + +
Sbjct: 66  LIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELD 125

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           LVV SSL  MY +   +     V   M  RN+V+W ++I+ +AQN      L +++    
Sbjct: 126 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI 185

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            S  RPN+    +V+++C+ L     G+  H   ++ G      V S+L+ MY+KCG + 
Sbjct: 186 -SGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLG 244

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHAC 341
            + K F+   +   V ++SMI     +G G  ++ LFN M  +  ++ N+V F+ +L+AC
Sbjct: 245 DAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYAC 304

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGL D+G++  D M  KYG  P  KHYTCVVD+LGR G LD+A  + KS+ + PD  P
Sbjct: 305 SHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPD--P 362

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W TLLSA  +H   ++A +   +++E +   +  YV L+N +A A  W +V  +R  M
Sbjct: 363 VIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSM 422

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +   + KE G SW E + + + F  G+    +  E+ S L+EL  +MK +GY    T  V
Sbjct: 423 RDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGY-KPDTASV 481

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             D+++E +E  +  HSE+LA+AF L+ +P+G  IRI+KNLR+C DCH  FK IS I+ R
Sbjct: 482 LHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNR 541

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           +  +RD +RFHHF NG CSCGD+W
Sbjct: 542 EITLRDGSRFHHFINGKCSCGDYW 565


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/578 (35%), Positives = 327/578 (56%), Gaps = 17/578 (2%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF---DEMLEPNVVSY 96
           C  L  L  +H+ ILK+G  +N   L    +    L     A                SY
Sbjct: 28  CNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSY 87

Query: 97  TSLMAGYINMGQPQI------ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            + +   +     Q       + L ++ ML   V PN+FTF  V+K C+ +  L  GK +
Sbjct: 88  DAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCV 147

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDG---ARRVFDLMGCRNVVSWTSIIVAHAQN 207
           H  +  FGF+ ++ V ++L+ MY  C   DG   A +VFD     + V+W+++I    + 
Sbjct: 148 HGCVVKFGFEEDVHVLNTLIHMYC-CLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRL 206

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
                A+++FRE        P++  + SV++ACA LG L  GK     V +     +  +
Sbjct: 207 GCSSRAVDLFREMQVMGV-CPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVEL 265

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +AL+DM+AKCG+V+ + K+F ++ + ++V++TS+I G A +G G  ++ LF+EM+  GI
Sbjct: 266 CNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGI 325

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            P+DV F+GVL ACSHSGLVD+G  +  SM R + I+P  +HY C+VD+L R G + EA+
Sbjct: 326 TPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAF 385

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +  + +  +P+   ++W T+++A    G + +    S +LI+S     + YV LSN YA 
Sbjct: 386 EFVQKMPFEPNQ--IIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAK 443

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
             +WE    +R  M   G+ K PG + +E+ ++ Y F AG+   ++  E+  ++ E+ R+
Sbjct: 444 LRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGRE 503

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           +K+ GYV   T  V +D+++E +E+ +  HSE+LA+AF L++ P G +IRI+KNLR+C D
Sbjct: 504 IKKAGYV-PTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCED 562

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   K IS +  R+ VVRD NRFHHF+NG CSC DFW
Sbjct: 563 CHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 336/605 (55%), Gaps = 14/605 (2%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
            T   + L     +S    +   +  L  C  L +LA +H+  +K+G  ++   +  L+ 
Sbjct: 6   LTATPAPLLPAKPKSPPPQQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLT 65

Query: 71  CYVRLKKTQV----ARQLFDEMLEP-NVVSYTSLMAGYINMGQPQ-----IALLLFQKML 120
                         ARQ+FD +  P + V Y +L+ GY     P       A+ +F +ML
Sbjct: 66  LCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRML 125

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V P+ +TF +++KAC+       G+Q H      G   +  V  +L++MY +C D  
Sbjct: 126 EEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDAR 185

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR +F       VVS+ ++I A  ++++  EAL +FRE   +   +P    + SV++AC
Sbjct: 186 AARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGL-KPTSVTVISVLSAC 244

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A LG L  G+  H  V + G      V++AL+DMYAKCGS+  +  VF  + +     ++
Sbjct: 245 ALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWS 304

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            MIV  A +G GR ++ LF EM   G+KP+D+TF+GVL+ACSHSGLV EG+Q+ D M + 
Sbjct: 305 VMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KD 363

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +GI+P  KHY CV D+L R+G+L+ AYK    + ++P   P+LW TLLSA   HG  ++ 
Sbjct: 364 HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPT--PILWRTLLSACGGHGDFELG 421

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
                ++++ +      YV  SN  A  G WE ++ +R  M   G+ K PGCS +EI + 
Sbjct: 422 KRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNT 481

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F+AG+    +  E   ++ E+  ++K  GYV   + +  V++ +E +   +  HSE+
Sbjct: 482 VHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEK 541

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AFGL++   G T+R++KNLR+C DCH + KL+S +  R  ++RD+NRFHHF  G CS
Sbjct: 542 LAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICS 601

Query: 601 CGDFW 605
           CGD+W
Sbjct: 602 CGDYW 606


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 326/571 (57%), Gaps = 6/571 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +    +   +I+   +H  +LK G  S+ F  N LIN Y +  + Q A+ +FD+M
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              ++VS+ S++A Y     P  AL  F+ M    + P+  T  ++    S L+D    +
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 149 QIHTH-IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            I    I       ++V+ ++LV+MY K   ++ A  VFD +  ++ +SW +++  + QN
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQN 403

Query: 208 AQGHEALEMFREFNYQSRDR-PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
               EA++ +     + RD  PNQ    S+I A + +G L  G   H  ++++    +  
Sbjct: 404 GLASEAIDAYNMME-ECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVF 462

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           VA+ L+D+Y KCG +  +  +F  I   + V + ++I     +G G  +L LF +M++  
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +K + +TFV +L ACSHSGLVDEG +  D M ++YGI P  KHY C+VD+LGR G L++A
Sbjct: 523 VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKA 582

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y+L +++ + PD    +WG LLSA +++G  ++   AS++L+E + +    YV LSN YA
Sbjct: 583 YELVRNMPIQPDAS--IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYA 640

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
              +WE V  +RS  +  G+ K PG S V +  +   FY GN    + +E+   L+ L  
Sbjct: 641 NTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSA 700

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           KMK  GYV   +  V+ D+E++ +E+I+  HSERLA+AFG+IS P    IRI KNLR+C 
Sbjct: 701 KMKSLGYVPDYS-FVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCG 759

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           DCH+  K IS I ER+ VVRD NRFHHF++G
Sbjct: 760 DCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 203/392 (51%), Gaps = 7/392 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L+ C  L+    VH  + K GF  + F    L++ Y R     VA ++F +M   +
Sbjct: 127 FPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKD 186

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V S+ ++++G+   G    AL +  +M G  V  +  T A+++  C+   D+I G  IH 
Sbjct: 187 VGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHL 246

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+   G   ++ V ++L++MY K   +  A+ VFD M  R++VSW SII A+ QN     
Sbjct: 247 HVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPST 306

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLG-RLVSGKVAHGVVVRSGCEFNDVVASAL 271
           AL  F+        RP+   + S+ +  + L  + +S  +   V+ R   + + V+ +AL
Sbjct: 307 ALRFFKGMQLGGI-RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNAL 365

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN 330
           V+MYAK G +N +  VF+++     +++ +++ G  + GL   ++D +N M   R   PN
Sbjct: 366 VNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPN 425

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             T+V ++ A SH G + +G++ + +   K  +  D    TC++D+ G+ GRL++A  L 
Sbjct: 426 QGTWVSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLF 484

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             I   P    + W  ++++  +HGR + A++
Sbjct: 485 YEI---PRDTSVPWNAIIASLGIHGRGEEALQ 513



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 217/455 (47%), Gaps = 17/455 (3%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           ++  +S H  A F      C ++ +   +H+ +L  G   N      LIN YV      +
Sbjct: 13  KSATTSLHKDADFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISL 72

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL----LLFQKMLGNLVWPNEFTFATVIK 136
           +R  FD + + N+ S+ S+++ Y+  G+   A+     LF    G  + P+ +TF  ++K
Sbjct: 73  SRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILK 132

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC  L D   GK++H  +   GF+ ++ V +SLV +Y +   +D A +VF  M  ++V S
Sbjct: 133 ACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS 189

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W ++I    QN     AL +      +   + +   +AS++  CA    +++G + H  V
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGV-KMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           ++ G + +  V++AL++MY+K G +  +  VF+++    +V++ S+I    +      +L
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH--LDSMYRKYGIIPDAKHYTCVV 374
             F  M   GI+P+ +T V +    S   L D+ I    L  + R+  +  D      +V
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQ--LSDQRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           +M  + G ++ A+ +   +   P    + W TL++    +G    A++A N + E    +
Sbjct: 367 NMYAKLGYMNCAHTVFDQL---PRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI 423

Query: 435 AN--AYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
            N   +V++   Y+  G  +    + +++ +  ++
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY 458


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/601 (33%), Positives = 331/601 (55%), Gaps = 48/601 (7%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V+  +L  GF  N+     +++ +++  +  +AR+ F+E+   +V  +  +++GY + G+
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH-IETFGFQYNLVVCS 167
            + AL +F+KM+   V PN  T A+ + AC+ L+ L  G++IH + I+      +L+V +
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 168 SLVDMYGKCNDVDGARR------------------------------------------- 184
           SLVD Y KC  V+ ARR                                           
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VF  +  R+VV W SII A AQ+ +   AL++ RE N  S    N   + S + AC+ L 
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL-SNVEVNTVTMVSALPACSKLA 371

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  GK  H  ++R G +  + + ++L+DMY +CGS+  S ++F+ +    +V++  MI 
Sbjct: 372 ALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMIS 431

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
               +G G  +++LF +  + G+KPN +TF  +L ACSHSGL++EG ++   M  +Y + 
Sbjct: 432 VYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMD 491

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P  + Y C+VD+L R G+ +E  +  + +  +P+    +WG+LL A R+H   D+A  A+
Sbjct: 492 PAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAA--VWGSLLGACRIHCNPDLAEYAA 549

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
             L E   Q +  YV ++N Y+ AG WE+   +R  MK  G+ K PGCSW+E++ + ++F
Sbjct: 550 RYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSF 609

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
             G+       ++ + +  L   +KE GYV   T  V  DV+++ +E  +  HSE++ALA
Sbjct: 610 VVGDTSHPLMEQISAKMESLYFDIKEIGYV-PDTNFVLQDVDEDEKEFSLCGHSEKIALA 668

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLIS   G  +RI+KNLR+C DCH   K IS + +RD ++RD  RFHHF +G CSCGD+
Sbjct: 669 FGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDY 728

Query: 605 W 605
           W
Sbjct: 729 W 729



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 201/426 (47%), Gaps = 52/426 (12%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ+C+ L +L     VH++++ +G     F  + L+  Y +    + AR++FD+M E NV
Sbjct: 17  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 76

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            S+T++M  Y  +G  +  + LF  M+   V P+ F F  V KACS L +   GK ++ +
Sbjct: 77  FSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDY 136

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           + + GF+ N  V  S++DM+ KC  +D ARR F+ +  ++V  W  ++  +    +  +A
Sbjct: 137 MLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKA 196

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR-SGCEFNDVVASALV 272
           L +FR+   +   +PN   +AS ++AC +L  L  G+  HG  ++    + + +V ++LV
Sbjct: 197 LNVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 255

Query: 273 DMYAKCGSV----------------------------NYSD---------------KVFN 289
           D YAKC SV                             Y D                VF+
Sbjct: 256 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFS 315

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +S   VV + S+I   A+ G    +LDL  EM    ++ N VT V  L ACS    + +
Sbjct: 316 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 375

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G + +     + G+         ++DM GR G + ++ ++     + P    + W  ++S
Sbjct: 376 G-KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRI---FDLMPQRDLVSWNVMIS 431

Query: 410 ASRLHG 415
              +HG
Sbjct: 432 VYGMHG 437



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 3/231 (1%)

Query: 122 NLVWPNEFT--FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
           +L  P+E    +A++++ C  L +L  G Q+H  +   G      + S L+++Y +   V
Sbjct: 2   DLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV 61

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           + ARR+FD M  RNV SWT+I+  +       E +++F         RP+  +   V  A
Sbjct: 62  EDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFY-LMVNEGVRPDHFVFPKVFKA 120

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C+ L     GK  +  ++  G E N  V  +++DM+ KCG ++ + + F  I    V  +
Sbjct: 121 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 180

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
             M+ G    G  + +L++F +M+  G+KPN +T    + AC++  L+  G
Sbjct: 181 NIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 231


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 319/558 (57%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +K+ ++ + F  N L++ Y +     +A+ LFDEM E + VSY  ++ GY   GQ
Sbjct: 266 IHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQ 325

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + +  LF+++ G       F FAT++   ++  +L  G+Q H           + V ++
Sbjct: 326 YEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNA 385

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC   + A R+F  +  RN V WT+II  + Q     EAL+MF+E N ++    
Sbjct: 386 LVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENV-HG 444

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   AS + A A+L  +  GK  H  V+R G   +    S LVDMYA CGS+  + +VF
Sbjct: 445 DQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVF 504

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + + ++V + ++I   ++ G    +   F +MI  G+ P+ V+F+ VL ACSH GLV+
Sbjct: 505 KEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVE 564

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           + + + +SM + Y + P  KHY  ++D+L R+GR +EA  L   +  +PD   ++W ++L
Sbjct: 565 KALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPD--EVMWSSVL 622

Query: 409 SASRLHGRVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           ++ R+H   D+A +A++QL + +  + A AYV +SN YA AG+WEN   ++  M+  G+ 
Sbjct: 623 NSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVK 682

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           K    SWVEI  + + F A +    +  ++   +  L   M + GY    T     +V++
Sbjct: 683 KVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGY-KPDTSCTLQNVDE 741

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E + E +  HSERLA+AF LI+ P+G  I IMKNLR C DCH   K+IS IV R+  VRD
Sbjct: 742 EMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRD 801

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHFR+GSCSCGD+W
Sbjct: 802 SSRFHHFRDGSCSCGDYW 819



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 193/402 (48%), Gaps = 5/402 (1%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  +    +   L  +  +HS I++ GF ++    N L++ Y +     +A QLF EM
Sbjct: 145 TFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEM 204

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              + VS+  ++ GY   G  + AL LF +M      P+ FTFA ++       D+I G+
Sbjct: 205 PTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQ 264

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           QIH       + +++ V ++L+D Y K + +D A+ +FD M   + VS+  II  +A N 
Sbjct: 265 QIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNG 324

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           Q  ++ ++F+     S DR N    A++++  A    L  G+  H   V +       V 
Sbjct: 325 QYEKSFDLFKRLQGTSFDRKN-FPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVG 383

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +ALVDMYAKC     ++++F  ++  + V +T++I    + G    +L +F EM    + 
Sbjct: 384 NALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVH 443

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            +  TF   L A ++   V  G Q   S+ R  G++      + +VDM    G + +A +
Sbjct: 444 GDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSMKDAIE 502

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           + K +   PD   + W  L+SA   +G  +    +   +IES
Sbjct: 503 VFKEM---PDRNIVCWNALISAYSQNGDAEATFSSFADMIES 541



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 7/281 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT ++N +++ YV+ +    AR+LF+ M   N VS+T ++ GY    QP+ A  L+ +M 
Sbjct: 76  NTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMC 135

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            + V P+  TFAT++        L    QIH+HI  FGF  +L+V +SLVD Y K   +D
Sbjct: 136 RSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLD 195

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNYQSRDRPNQHMLASVI 237
            A ++F  M  ++ VS+  +I  + +     EAL++F   R  ++Q    P+    A+++
Sbjct: 196 IASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQ----PSGFTFAAML 251

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
                   ++ G+  HG+ +++   ++  VA+AL+D Y+K   ++ +  +F+ +     V
Sbjct: 252 GMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGV 311

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           +Y  +I G A  G    S DLF  +        +  F  +L
Sbjct: 312 SYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATML 352


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/538 (38%), Positives = 315/538 (58%), Gaps = 4/538 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y +    + AR +F+ +   +V+ ++ L++ Y    Q + A  +F +M+ + V PN
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           EF+ + V++AC+ +A L  G+QIH  +   G++  L V ++L+D+Y KC +++ +  +F 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +   N VSW +IIV + Q+    +AL +F+E    +     Q   +SV+ ACA+   + 
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMR-AAHVLSTQVTFSSVLRACANTASIK 470

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
                H ++ +S    + +V ++L+D YAKCG +  + KVF  I    VV++ ++I G A
Sbjct: 471 HTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYA 530

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G    +L+LFN M     KPNDVTFV +L  C  +GLV++G+   +SM   + I P  
Sbjct: 531 LHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSM 590

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            HYTC+V +LGR GRL++A K    I   P   P++W  LLS+  +H  V +   ++ ++
Sbjct: 591 DHYTCIVRLLGRAGRLNDALKFIGDIPSTP--SPMVWRALLSSCVVHKNVALGKFSAEKV 648

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           +E   Q    YV LSN YA AG  + V  LR  M+  G+ KE G SWVEI+ + +AF  G
Sbjct: 649 LEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVG 708

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +A       + ++L  L  K    GYV     +V  DV++E +  ++ +HSERLALA+GL
Sbjct: 709 SADHPDMRIINAMLEWLNLKASREGYV-PDINVVLHDVDEEEKARMLWVHSERLALAYGL 767

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              P G  IRIMKNLR C DCH VFK+IS IV+R+ VVRD+NRFHHF  G CSCGD+W
Sbjct: 768 SMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 183/363 (50%), Gaps = 7/363 (1%)

Query: 48  SVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +VH+ +++ G ++  +TF  N L+N Y +L     AR+LFD M E N+VS+ +L+ GY  
Sbjct: 68  AVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYAL 127

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G  + A  LF+++       N F   T++K    +        IH      G   N  V
Sbjct: 128 RGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFV 187

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            SSL+D Y  C  V  AR VFD +  ++ V+WT+++  +++N    +AL  F +      
Sbjct: 188 GSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGA 247

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +PN  +L SV+ A   L   V GK  HG  V++ C+    V  AL+DMYAKCG +  + 
Sbjct: 248 -KPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDAR 306

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            VF  I +  V+ ++ +I   A+      + ++F  M+   + PN+ +  GVL AC++  
Sbjct: 307 TVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVA 366

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +D G Q + ++  K G   +      ++D+  +   ++ + ++ +S++   D   + W 
Sbjct: 367 FLDLG-QQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLR---DANEVSWN 422

Query: 406 TLL 408
           T++
Sbjct: 423 TII 425



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 170/327 (51%), Gaps = 25/327 (7%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C ++  L     +H+ ++K G+ S  F  N L++ Y + +  + + ++F  + + N 
Sbjct: 359 LQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANE 418

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ +++ GY   G  + AL +FQ+M    V   + TF++V++AC+  A +    QIH+ 
Sbjct: 419 VSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSL 478

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           IE   F  + +VC+SL+D Y KC  +  A +VF+ +   +VVSW +II  +A + +  +A
Sbjct: 479 IEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDA 538

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL-- 271
           LE+F   N +S  +PN     ++++ C S     +G V  G+ + +    +  +  ++  
Sbjct: 539 LELFNRMN-KSDTKPNDVTFVALLSVCGS-----TGLVNQGLSLFNSMTMDHRIKPSMDH 592

Query: 272 ----VDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAAKY---GLGRFSLDLFNEMI 323
               V +  + G +N + K    I S PS + + +++     +    LG+FS +   E  
Sbjct: 593 YTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLE-- 650

Query: 324 SRGIKPND-VTFVGVLHACSHSGLVDE 349
              I+P D  T+V + +  + +G++D+
Sbjct: 651 ---IEPQDETTYVLLSNMYAAAGILDQ 674


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 321/546 (58%), Gaps = 12/546 (2%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            ++ + N ++ CY+R    + A   F++M   ++ S+ +L++G+   GQ Q A  LF  M
Sbjct: 134 PDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM 193

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                  N  +++ +I       DL   ++++ ++   G + ++VV ++++  Y K   V
Sbjct: 194 PEK----NGVSWSAMISGYVEHGDLEAAEELYKNV---GMK-SVVVETAMLTGYMKFGKV 245

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           + A R+F  M  +N+V+W S+I  + +N +  + L++F+    +SR RPN   L+SV+  
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLG 304

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C++L  L  G+  H +V +S    +    ++L+ MY KCG ++ + K+F  +    V+++
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISW 364

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G A++G GR +L LF++M +  +KP+ +TFV V+ AC+H+G VD G+Q+  SM +
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           ++GI     HYTCV+D+LGR GRLDEA  L K +   P     ++GTLL A R+H  +D+
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAA--IYGTLLGACRIHKNLDL 482

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           A  A+  L+  +   A  YV L+N YA   +W+ V  +R  MK   + K PG SW+EI+ 
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            T+ F + + L    + +   L EL+ KMK  GYV         DVE+E +E+++  HSE
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYV-PDLEFALHDVEEEHKEKLLLWHSE 601

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL+    G  IR+ KNLR+C DCH   K IS I +R+ +VRD  RFHHFRNG C
Sbjct: 602 KLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFC 661

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 662 SCGDYW 667



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 131/254 (51%), Gaps = 3/254 (1%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           E+ K+  + +      ++  Y++  K ++A ++F  M   N+V++ S++AGY+   + + 
Sbjct: 219 ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
            L +F+ M+ + V PN  + ++V+  CS L+ L  G+Q+H  +       +   C+SL+ 
Sbjct: 279 GLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLIS 338

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC D+D A ++F  M  ++V+SW ++I  +AQ+  G +AL +F +    +  +P+  
Sbjct: 339 MYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTM-KPDWI 397

Query: 232 MLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
              +VI AC   G +  G +    +    G E   V  + ++D+  + G ++ +  +   
Sbjct: 398 TFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457

Query: 291 IS-NPSVVTYTSMI 303
           +   P    Y +++
Sbjct: 458 MPFKPHAAIYGTLL 471



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 61/317 (19%)

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA---- 208
           H++T     ++V  +  +  + +  D++ AR VF+ M  R  V+W +++  + + A    
Sbjct: 66  HVDTAS---DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVK 122

Query: 209 QGHEALEMFREFNYQS---------RDRPNQHMLA--------------SVINACASLGR 245
           + HE  +   E +  S         R    +  LA              ++I+  A  G+
Sbjct: 123 EAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 246 ---------------------LVSGKVAHGVVVRSGCEFND------VVASALVDMYAKC 278
                                ++SG V HG +  +   + +      VV +A++  Y K 
Sbjct: 183 MQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKF 242

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G V  ++++F R++  ++VT+ SMI G  +       L +F  MI   ++PN ++   VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
             CS+   +  G Q +  +  K  +  D    T ++ M  + G LD A+KL   +   P 
Sbjct: 303 LGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM---PR 358

Query: 399 GGPLLWGTLLSASRLHG 415
              + W  ++S    HG
Sbjct: 359 KDVISWNAMISGYAQHG 375



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 40  CKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C +L +L     +H  + KS    +T     LI+ Y +      A +LF EM   +V+S+
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISW 364

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            ++++GY   G  + AL LF KM    + P+  TF  VI AC+    +  G Q    ++ 
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 157 -FGFQYNLVVCSSLVDMYGKCNDVDGA 182
            FG +   V  + ++D+ G+   +D A
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEA 451


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/625 (34%), Positives = 337/625 (53%), Gaps = 40/625 (6%)

Query: 16  SSLTR-QNKRSSCHTKAHFIQQLQECKHLISLASVHSEIL---KSGFLSNTFTLNHLINC 71
           SS++R  N  ++  +    +     CK L  L  VH++I+    S F  +       ++ 
Sbjct: 52  SSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSP 111

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           +        A+ +F  +  P    Y SL+    +   P  AL L+  ML + + P+  T+
Sbjct: 112 FPTF--LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTY 169

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND------------- 178
             VIKAC+  +    G  +HTH+   GF+ +  + SSL+ +Y    D             
Sbjct: 170 PFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSA 229

Query: 179 ---------VDG---------ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
                    +DG         AR VFD M CR+V+SW ++I  +A   + +EAL +F + 
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
                 +P +  + S+++ACA LG L  G   H  +  +  E N +V +ALVDMYAKCG 
Sbjct: 290 RAVGV-KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGK 348

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ + +VFN + +  V+ + ++I G A +G  + +  LF EM   G++PND+TFV +L A
Sbjct: 349 ISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSA 408

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSH+G+VDEG + LD M   YGI P  +HY CV+D+L R G L+EA +L  ++ ++P+  
Sbjct: 409 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPN-- 466

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P   G LL   R+HG  ++      +LI      +  Y+ LSN YA A +W++   +R+ 
Sbjct: 467 PSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 526

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           MK  GI K PG S +E++   + F AG+      +++   L E+  ++K        TG 
Sbjct: 527 MKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGN 586

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V +D+E+E +E  + +HSE+LA+A+GL+ +     IRI+KNLR+CRDCH V KLIS +  
Sbjct: 587 VLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYG 646

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ +VRD NRFHHF +G CSC DFW
Sbjct: 647 REIIVRDRNRFHHFEDGECSCLDFW 671


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/576 (35%), Positives = 336/576 (58%), Gaps = 12/576 (2%)

Query: 33  FIQQLQEC-KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           FI +   C +H      +H +++K G+ S  F  N LI  Y +  K +++RQ+FDEM + 
Sbjct: 15  FIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDK 74

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N VS+++++   +   + +    LF++ML     P+      ++ A + +        ++
Sbjct: 75  NAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNAMACVRSHEEADDVY 131

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             +   G  ++  V S+   M+ +C  V+ AR++FD +  +++V+W + I A+ +     
Sbjct: 132 RVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPL 191

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA--S 269
           EAL + ++   Q    P+   L  VI AC++L       + HG++  +G  +N ++A  +
Sbjct: 192 EALGLLKQMMLQGI-FPDAITLLGVIRACSTLASFQLAHIVHGIIT-TGFFYNQLLAVET 249

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+D+Y KCGS+ Y+ KVF+ +   +++T+++MI G   +G GR +L+LF++M +  +KP
Sbjct: 250 ALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA-SVKP 308

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + +TFV +L ACSHSGLV EG +  +SM R +G+ P  +HY C+VD+LGR G+LDEA   
Sbjct: 309 DHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDF 368

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + + V P+    +WG LL A R+H  VD+A   +  L + +   A  YV L N Y L G
Sbjct: 369 IERMPVRPNAA--VWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTG 426

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           + +   S+R+ MK  G+ K  G S +EI+++ YAF AG+    +   + S L  L  +++
Sbjct: 427 KRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIR 486

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY       V  DV++E +E ++ LHSE+LA+ FGL+++  G  IRI KNLR+C DCH
Sbjct: 487 QEGYTP-DINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCH 545

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              K IS +  R+ VVRD +RFHHF+NG+CSC D+W
Sbjct: 546 TATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 184/365 (50%), Gaps = 25/365 (6%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML   + P+ FTF  +IKACS L     G +IH  +  FG+Q  + + +SL+ MYGKC+ 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
            + +R+VFD M  +N VSW++II A  Q+ +  E   +FR+   +   RP++    +++N
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG-SRPSR---GAILN 116

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           A A +         + VVV +G +F+  V SA   M+A+CG V  + K+F+ I +  +VT
Sbjct: 117 AMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + + I    K  +   +L L  +M+ +GI P+ +T +GV+ AC  S L    + H+    
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRAC--STLASFQLAHI---- 230

Query: 359 RKYGIIPDAKHY-------TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
             +GII     Y       T ++D+  + G L  A K+   +Q   +   + W  ++S  
Sbjct: 231 -VHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ---ERNIITWSAMISGY 286

Query: 412 RLHGRVDIAVEASNQLIESNQQVANAYVTL----SNTYALAGEWENVHSLRSEMKRTGIH 467
            +HG    A+   +Q+  S +     +V++    S++  +A  WE  +S+  +   T   
Sbjct: 287 GMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRP 346

Query: 468 KEPGC 472
           +   C
Sbjct: 347 EHYAC 351


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/622 (34%), Positives = 336/622 (54%), Gaps = 56/622 (9%)

Query: 36  QLQECKHLISLASVHSEILKSGFLSNTFTLNHLI----NCYVRLKKTQVARQLFDEMLEP 91
           Q+  C+ +  L+ +H+  +KSG + +T     ++       +  +    A ++F++M + 
Sbjct: 29  QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88

Query: 92  NVVSYTSLMAGYINMGQPQ--IALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGK 148
           N  S+ +++ G+    + +  IA+ LF +M+ +  V PN FTF +V+KAC+    +  GK
Sbjct: 89  NCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGK 148

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCN------------------------------- 177
           QIH     +GF  +  V S+LV MY  C                                
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208

Query: 178 --------------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
                         D   AR +FD M  R+VVSW ++I  ++ N    +A+E+FRE   +
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK-K 267

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
              RPN   L SV+ A + LG L  G+  H     SG   +DV+ SAL+DMY+KCG +  
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  VF R+   +V+T+++MI G A +G    ++D F +M   G++P+DV ++ +L ACSH
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            GLV+EG ++   M    G+ P  +HY C+VD+LGR+G LDEA +   ++ + PD   ++
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD--VI 445

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W  LL A R+ G V++    +N L++     + AYV LSN YA  G W  V  +R  MK 
Sbjct: 446 WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 505

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             I K+PGCS ++I    + F   +    +  E+ S+L E+  K++  GY    T  V +
Sbjct: 506 KDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ-VLL 564

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           ++E+E +E ++  HSE++A AFGLIS   G  IRI+KNLR+C DCH   KLIS + +R  
Sbjct: 565 NLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKI 624

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
            VRD  RFHHF++GSCSC D+W
Sbjct: 625 TVRDRKRFHHFQDGSCSCMDYW 646


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 329/576 (57%), Gaps = 8/576 (1%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  L  LA+   V      +G+ ++ F  + ++N Y +      A ++FD M 
Sbjct: 106 FTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMR 165

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + + V++++++ G++N GQP  A+ ++ +M  + +  +E     V++AC+   D   G  
Sbjct: 166 KRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGAS 225

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H ++     Q ++V+ +SLVDMY K    D ARRVF+LM  RN VSW+++I   AQ   
Sbjct: 226 VHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGN 285

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL +FR     S   PN   +   + AC+ LG L  GK  HG ++R+  E + +V +
Sbjct: 286 ADEALGLFRMMQV-SGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGT 343

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A++DMY+KCGS++ +  +F+++ +  ++++  MI     +G GR +L LF EM    ++P
Sbjct: 344 AVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRP 403

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  +L A SHSGLV+EG    + M  +YGI P  KH  C+VD+L R+G ++EA  L
Sbjct: 404 DHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGL 463

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+   P    L+   LLS    + ++++    + +++E           +SN YA A 
Sbjct: 464 VASLHSKPTISILV--ALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAK 521

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W  V  +R  MK  G  K PGCS +EIR   + F   +    +  ++L ++ +L+ +M+
Sbjct: 522 NWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMR 581

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY+  KT  V+ D+E+  +E+++  HSERLA AFGL++   G  + ++KNLR+C DCH
Sbjct: 582 KMGYIP-KTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCH 640

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K +S I +R+ VVRD  RFHHF++G+CSCGD+W
Sbjct: 641 DAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 186/383 (48%), Gaps = 10/383 (2%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNH-LINCYVRLKKTQVARQ-LFDEMLEPN-V 93
           L  C  L +L  +H+ ++ S   S    L+  L   Y R      A   L      P+ +
Sbjct: 10  LSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSPSSI 69

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            ++ +L+A +     P  AL +F + L     P+  TF   + AC+ L DL TG+ +   
Sbjct: 70  PAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGDLATGEVVTDR 128

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G+  ++ VCSS++++Y KC  +D A +VFD M  R+ V+W++++       Q  +A
Sbjct: 129 ASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQA 188

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +EM+        +  ++ ++  V+ ACA+ G    G   HG ++R   + + V++++LVD
Sbjct: 189 IEMYMRMRRDGLE-ADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVD 247

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAK G  + + +VF  + + + V+++++I   A+YG    +L LF  M   G+ PN   
Sbjct: 248 MYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGP 307

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            VG L ACS  GL+  G      + R   +  D    T V+DM  + G L  A  L   +
Sbjct: 308 VVGALLACSDLGLLKLGKSIHGFILRTLEL--DRMVGTAVIDMYSKCGSLSSAQMLFDKV 365

Query: 394 QVDPDGGPLLWGTLLSASRLHGR 416
            V  D   + W  +++    HGR
Sbjct: 366 -VSRD--LISWNVMIACCGAHGR 385


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 328/564 (58%), Gaps = 3/564 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL  L   H+ ++ +G   +   L  L+            R+LF  + +P+   + SL+ 
Sbjct: 22  HLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIK 81

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
              N G    A+  +++ML + + P+ +TF +VIKAC+ L+ L  G  +H+H+   G+  
Sbjct: 82  ASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYAS 141

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N  V ++LV  Y K      AR+VFD M  R++++W S+I  + QN    EA+E+F +  
Sbjct: 142 NSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMR 201

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            +S   P+     SV++AC+ LG L  G   H  +V +G   N V+A++LV+M+++CG V
Sbjct: 202 -ESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDV 260

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  VF+ ++  +VV++T+MI G   +G G  ++++F+ M + G+ PN VT+V VL AC
Sbjct: 261 GRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSAC 320

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +H+GL++EG     SM ++YG++P  +H+ C+VDM GR G L+EAY+  + +  + +  P
Sbjct: 321 AHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSE-ELVP 379

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W  +L A ++H   D+ VE +  LI +  +    YV LSN YALAG  + V S+R+ M
Sbjct: 380 AVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVM 439

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
            + G+ K+ G S +++ +++Y F  G+      +E+   L EL  + K+ GY       +
Sbjct: 440 IQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAM 499

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
               E+E    +   HSE+LA+AFGL+    G+T+RI+KNLR+C DCH   K IS ++ R
Sbjct: 500 HELEEEEREYAL-RYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNR 558

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + +VRD  RFHHFR GSCSC D+W
Sbjct: 559 EIIVRDKLRFHHFREGSCSCSDYW 582


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/539 (36%), Positives = 313/539 (58%), Gaps = 6/539 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y +    + AR  F+ +   +V+  + +++ Y    Q + A  LF +++ + V PN
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 344

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E++ ++V++AC+ +  L  GKQIH H    G + +L V ++L+D Y KCND+D + ++F 
Sbjct: 345 EYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS 404

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP-NQHMLASVINACASLGRL 246
            +   N VSW +I+V  +Q+  G EAL +F E   Q+   P  Q   +SV+ ACAS   +
Sbjct: 405 SLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM--QAAQMPCTQVTYSSVLRACASTASI 462

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
                 H  + +S    + V+ ++L+D YAKCG +  + KVF  +    ++++ ++I G 
Sbjct: 463 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 522

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A +G    +L+LF+ M    ++ ND+TFV +L  C  +GLV+ G+   DSM   +GI P 
Sbjct: 523 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPS 582

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HYTC+V +LGR GRL++A +    I   P    ++W  LLS+  +H  V +   ++ +
Sbjct: 583 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA--MVWRALLSSCIIHKNVALGRFSAEK 640

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           ++E   Q    YV LSN YA AG  + V  LR  M+  G+ K PG SWVEI+ + +AF  
Sbjct: 641 ILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 700

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+        + ++L  L  K    GY+     +V  DV+ E +  ++ +HSERLALA+G
Sbjct: 701 GSVDHPDMRVINAMLEWLNLKTSREGYI-PDINVVLHDVDKEQKTRMLWVHSERLALAYG 759

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L+  P G  IRI+KNLR C DCH  F +IS IV+R+ +VRD+NRFHHF +G CSCGD+W
Sbjct: 760 LVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 168/364 (46%), Gaps = 28/364 (7%)

Query: 48  SVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +VH  +++ G +   + F  N L+N Y +L     AR+LFD M E N+VS+ +L+  +  
Sbjct: 80  AVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQ 139

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIK-ACSMLADLITGKQIHTHIETFGFQYNLV 164
            G  + A  LF+++       N+F   T++K A +M A  + G  +H+     G  +N  
Sbjct: 140 RGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGG-VHSCAWKLGHDHNAF 198

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V S L+D Y  C+ V  A  VF+ +  ++ V WT+++  +++N     A   FR      
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA---FR------ 249

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
                         +C+ L    + +  HG  +++  +    V  AL+DMYAKCG +  +
Sbjct: 250 -----------CAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 298

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              F  I    V+  + MI   A+      + +LF  ++   + PN+ +   VL AC++ 
Sbjct: 299 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 358

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
             +D G Q + +   K G   D      ++D   +   +D + K+  S++   D   + W
Sbjct: 359 VQLDFGKQ-IHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR---DANEVSW 414

Query: 405 GTLL 408
            T++
Sbjct: 415 NTIV 418



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 161/327 (49%), Gaps = 25/327 (7%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C +++ L     +H+  +K G  S+ F  N L++ Y +      + ++F  + + N 
Sbjct: 352 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 411

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ +++ G+   G  + AL +F +M    +   + T+++V++AC+  A +    QIH  
Sbjct: 412 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 471

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           IE   F  + V+ +SL+D Y KC  +  A +VF  +  R+++SW +II  +A + Q  +A
Sbjct: 472 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADA 531

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL-- 271
           LE+F   N +S    N     ++++ C S     +G V HG+ +      +  +  ++  
Sbjct: 532 LELFDRMN-KSNVESNDITFVALLSVCCS-----TGLVNHGLSLFDSMRIDHGIKPSMEH 585

Query: 272 ----VDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGA---AKYGLGRFSLDLFNEMI 323
               V +  + G +N + +    I S PS + + +++          LGRFS +   E  
Sbjct: 586 YTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE-- 643

Query: 324 SRGIKPND-VTFVGVLHACSHSGLVDE 349
              I+P D  T+V + +  + +G +D+
Sbjct: 644 ---IEPQDETTYVLLSNMYAAAGSLDQ 667



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           A  +  C + G    G+  HG VVR G     +   A+ L++MY K G +  + ++F+R+
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNE---------------MISRGIKPNDVTFVG 336
              ++V++ +++   A+ G    +  LF                 M+   I  +     G
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 337 VLHACS------HSGLVDEGIQHLDSMYRKYGIIPDAKH 369
            +H+C+      H+  V  G+  +D+ Y    ++ DA+H
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGL--IDA-YSLCSLVSDAEH 218


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 332/606 (54%), Gaps = 26/606 (4%)

Query: 13  LAASSLTRQNKRSSCHTKAH-FIQQLQECKHL---ISLASVHSEILKSGFLSNTFTLNHL 68
           L A SL  Q  R      A  F   L+ C  L   I  +  H +I K G +   F    L
Sbjct: 31  LQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGL 90

Query: 69  INCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
           I+ Y +      AR++F+E        V Y +L++GY++  +   A+LLF++M    V  
Sbjct: 91  ISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPV 150

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N  T   +I AC    +L  G  +H     +GF  ++ V +  + MY KC  V+ A+++F
Sbjct: 151 NSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLF 210

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  + ++SW +++  +AQN      LE++R  +      P+   L  V+++CA+LG  
Sbjct: 211 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV-HPDPVTLVGVLSSCANLGAQ 269

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G      +  SG   N  + +AL++MYA+CG++  +  VF+ +   ++V++T++I G 
Sbjct: 270 SVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGY 329

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +G G  ++ LF EMI  GI+P+   FV VL ACSH+GL D+G+++   M R Y + P 
Sbjct: 330 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 389

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HY+C+VD+LGR GRL EA  L +S+ + PDG   +WG LL A ++H  V++A  A  +
Sbjct: 390 PEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGA--VWGALLGACKIHKNVELAELAFER 447

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           +IE   +    YV LSN Y+ A   + V  +R  MK   + K+PGCS+VE++ + + F  
Sbjct: 448 VIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIV 507

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI-------VGLHSE 539
           G+    +  E+  +L ELE  + +           F   E + REE        VG+HSE
Sbjct: 508 GDRNHLQSDEIYRVLEELEAIIMQE----------FGKPEKDNREESNKDGFTRVGVHSE 557

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL++   G  + I+KNLR+C DCH  FK++S IV R   VRD  RFHHFRNGSC
Sbjct: 558 KLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSC 617

Query: 600 SCGDFW 605
           SC D+W
Sbjct: 618 SCKDYW 623


>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
 gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
          Length = 631

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 347/584 (59%), Gaps = 15/584 (2%)

Query: 31  AHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           A F   LQ+C    SL     +H+EI+ +G   + F  NHLI  Y +    + AR +F++
Sbjct: 54  AAFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAVFEK 113

Query: 88  MLEPN-VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           +  PN VVS+T++++G+   G+  +AL  F+KM+   V PNE TF +++ AC+   D+  
Sbjct: 114 IESPNSVVSWTAMISGFALHGREDLALDFFRKMVAEGVRPNEVTFVSILGACAAARDVKH 173

Query: 147 GKQIHTHIET--FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           G  IH  +E+  FG  Y L V ++L+DMYGKC   + A RVF+ M  R++V W ++I   
Sbjct: 174 GTAIHELVESSEFGRSY-LSVGTALIDMYGKCGRPELASRVFEKMERRDLVVWNAMITVC 232

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE-- 262
           +Q     +AL +FR  + +    P++  L + + AC++L  L +GK  H +++ +G +  
Sbjct: 233 SQQGLDEQALRLFRVMDLEGHT-PDEVTLVAALEACSNLNSLAAGKKLHELILDAGLDSS 291

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
              V+A+ALV+MY + G +  + +VF ++++ ++V +T++I   A++G    ++DL   M
Sbjct: 292 IKMVLATALVNMYGRYGQLEDALRVFEKMNHWNLVAWTALIAAFAQHG-DVHAIDLSWRM 350

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G++ +D+ F+ VLHACSH+G+++ G+     M   +G+   A HY+C+VD+L R GR
Sbjct: 351 HLEGVQADDIVFLSVLHACSHAGVLEAGLSCFQGMVADFGVRGGAAHYSCMVDLLARCGR 410

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           + EA +L  S+  +P    +   TLL+A R+ G        +          A  YV +S
Sbjct: 411 VAEAEELLHSMPFEP--AHMEMKTLLAACRVSGDTPRGARVARLASGLIPLDAAPYVLMS 468

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN-ALFERGSEVLSLL 501
           + YA A +W+ V  +R  M + G+ K  G S VE++++ + F+AGN +     +E+   L
Sbjct: 469 HAYAAAEKWDEVAEVRERMAKLGVKKPRGWSCVEVKNRVHQFFAGNFSWHSEAAEIEVEL 528

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
           R L+  +KE GYV   TG +   V+++ +E+++ LHSER+A+AFGL+ +P G+ I ++KN
Sbjct: 529 RRLQAVVKEAGYVP-DTGQIGHCVQEDDKEDLLALHSERVAIAFGLLRVPAGLPIHVVKN 587

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH V K+IS  V R  VVRD  RFH F NG+CSCGD+W
Sbjct: 588 LRVCSDCHAVAKIISRSVGRRIVVRDAYRFHRFENGTCSCGDYW 631


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 327/560 (58%), Gaps = 10/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ +    L++ Y +      A ++FD M   +++ + +L++G  + G+
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 384

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A  +F  +    +  N  T A V+K+ + L      +Q+H   E  GF ++  V + 
Sbjct: 385 HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNG 444

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y KC+ +  A RVF+     ++++ TS+I A +Q   G  A+++F E   +  + P
Sbjct: 445 LIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE-P 503

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  +L+S++NACASL     GK  H  +++     +    +ALV  YAKCGS+  ++  F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +    VV++++MI G A++G G+ +L+LF  M+  GI PN +T   VL AC+H+GLVD
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  ++ +SM   +GI    +HY+C++D+LGR G+LD+A +L  S+    +    +WG LL
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS--VWGALL 681

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ +L     + +  +V L+NTYA +G W  V  +R  MK + I K
Sbjct: 682 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKK 741

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP  SWVE++D+ + F  G+       E+ S L EL   M + GY+      V VD+ D 
Sbjct: 742 EPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN----VDVDLHDL 797

Query: 529 AREE---IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            R E   ++  HSERLA+AF L+S P G  IR+ KNLR+CRDCH  FK IS+IV R+ ++
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIII 857

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD+NRFHHFR+G+CSCGD+W
Sbjct: 858 RDINRFHHFRDGTCSCGDYW 877



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 201/381 (52%), Gaps = 15/381 (3%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+  A +H+ +LKSGFL++    NHLI+ Y + ++   AR++FDE+ +P  VS++SL+  
Sbjct: 20  LLPGAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTA 77

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y N G P+ A+  F  M    V  NEF    V+K    + D   G Q+H      GF  +
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSD 134

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + V ++LV MYG    +D ARRVFD  G  RN VSW  ++ A+ +N Q  +A+++F E  
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 194

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
           + S  +P +   + V+NAC     + +G+  H +VVR G E +   A+ALVDMY K G V
Sbjct: 195 W-SGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 253

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + +  +F ++ +  VV++ ++I G    G    +++L  +M S G+ PN      +L AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 313

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV--VDMLGRTGRLDEAYKLAKSIQVDPDG 399
           + +G  D G Q    M +      D+  Y  V  VDM  +   LD+A K+   +      
Sbjct: 314 AGAGAFDLGRQIHGFMIKANA---DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS---HR 367

Query: 400 GPLLWGTLLSASRLHGRVDIA 420
             +LW  L+S     GR D A
Sbjct: 368 DLILWNALISGCSHGGRHDEA 388



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 177/344 (51%), Gaps = 3/344 (0%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYIN 105
           A VH+  + +GF S+ F  N L+  Y        AR++FDE   E N VS+  LM+ Y+ 
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 179

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             Q   A+ +F +M+ + + P EF F+ V+ AC+   ++  G+Q+H  +   G++ ++  
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 239

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LVDMY K   VD A  +F+ M   +VVSW ++I     N   H A+E+  +    S 
Sbjct: 240 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK-SSG 298

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             PN  ML+S++ ACA  G    G+  HG ++++  + +D +   LVDMYAK   ++ + 
Sbjct: 299 LVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAM 358

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ +S+  ++ + ++I G +  G    +  +F  +   G+  N  T   VL + + S 
Sbjct: 359 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA-SL 417

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
                 + + ++  K G I DA     ++D   +   L +A ++
Sbjct: 418 EAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRV 461



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 12/307 (3%)

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           L+ G  +H ++   GF  +L   + L+  Y KC     ARRVFD +     VSW+S++ A
Sbjct: 20  LLPGAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTA 77

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           ++ N     A++ F     +     N+  L  V+  C    +L  G   H + + +G   
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGV-CCNEFALPVVLK-CVPDAQL--GAQVHAMAMATGFGS 133

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
           +  VA+ALV MY   G ++ + +VF+   S  + V++  ++    K      ++ +F EM
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           +  GI+P +  F  V++AC+ S  +D G Q + +M  + G   D      +VDM  + GR
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGR 252

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           +D A  + + +   PD   + W  L+S   L+G    A+E   Q+ +S+  V N ++  S
Sbjct: 253 VDIASVIFEKM---PDSDVVSWNALISGCVLNGHDHRAIELLLQM-KSSGLVPNVFMLSS 308

Query: 443 NTYALAG 449
              A AG
Sbjct: 309 ILKACAG 315



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 37/208 (17%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL-------- 84
            I  L +C H      +  E+L+ G   + F L+ L+N    L   +  +Q+        
Sbjct: 476 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535

Query: 85  ---------------------------FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
                                      F  + E  VVS+++++ G    G  + AL LF 
Sbjct: 536 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKC 176
           +M+   + PN  T  +V+ AC+    +   K+  ++  E FG        S ++D+ G+ 
Sbjct: 596 RMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRA 655

Query: 177 NDVDGARRVFDLMGCR-NVVSWTSIIVA 203
             +D A  + + M  + N   W +++ A
Sbjct: 656 GKLDDAMELVNSMPFQANASVWGALLGA 683


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 318/575 (55%), Gaps = 37/575 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T   ++  YVR      AR +F+E+     V + ++++GY+  G    A  LF++M+
Sbjct: 231 DDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMV 290

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKC 176
              V  +EFTF +V+ AC+     + GK +H  I      F  +  L V ++LV +Y K 
Sbjct: 291 SEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKG 350

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ------------- 223
             +  A+R+FD M  ++VVSW +I+  +  +    +A+E+F+   Y+             
Sbjct: 351 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYV 410

Query: 224 ----SRD-------------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
               S D             +P  +  A  I AC  LG L  G+  H  +V+ G E ++ 
Sbjct: 411 HGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNS 470

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+ MYAKCG+VN +  VF  + N   V++ +MI    ++G GR +L+LF++M++ G
Sbjct: 471 AGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEG 530

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           I P+ ++F+ +L AC+H+GLVDEG  + +SM R +GI P   HY  ++D+LGR+GR+ EA
Sbjct: 531 IDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEA 590

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L K++  +P   P +W  +LS  R +G ++    A++QL     Q    Y+ LSNTY+
Sbjct: 591 RDLIKTMPFEPT--PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYS 648

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG W +   +R  M+  G+ KEPGCSW+E+  + + F  G+       EV   L  +  
Sbjct: 649 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGA 708

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +M++ GYV   T  V  D+E   +E I+  HSE+LA+ FGL+ +P G T+ ++KNLR+C 
Sbjct: 709 RMRKLGYV-PDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICG 767

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           DCH     +S  V R+ VVRDV RFHHF++G CSC
Sbjct: 768 DCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L +  + N +++ Y+       A ++F  M   N +S+  +++GY++ G  + AL LF +
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 424

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M    V P ++T+A  I AC  L  L  G+Q+H H+   GF+ +    ++L+ MY KC  
Sbjct: 425 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 484

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           V+ AR VF +M   + VSW ++I A  Q+  G EALE+F +   +  D P++    +++ 
Sbjct: 485 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGID-PDRISFLTILT 543

Query: 239 ACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSV 296
           AC   G +  G      + R  G    +   + L+D+  + G +  +  +   +   P+ 
Sbjct: 544 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 603

Query: 297 VTYTSMIVGAAKYG---LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             + +++ G    G    G ++ D    MI +    +D T++ + +  S +G
Sbjct: 604 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ----HDGTYILLSNTYSAAG 651



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 178/431 (41%), Gaps = 106/431 (24%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITG--K 148
           + V + ++M+ +        A+ +F  +LG+  + P++++F  +I A   + +L      
Sbjct: 124 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 183

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG---ARRVFDLMGCRNVVSWTSIIVAHA 205
           Q+H  +   G    L V ++L+ +Y KC+  +    AR+V D M  ++ ++WT+++V + 
Sbjct: 184 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 243

Query: 206 QNAQGHEALEMFREFNYQ-----------------------------SRDRP-NQHMLAS 235
           +    + A  +F E + +                             S   P ++    S
Sbjct: 244 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 303

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVA----SALVDMYAKCGSVNYSDKVFNRI 291
           V++ACA+ G  V GK  HG ++R    F    A    +ALV +Y+K G +  + ++F+ +
Sbjct: 304 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 363

Query: 292 SNPSVVTYTS-------------------------------MIVGAAKYGLGRFSLDLFN 320
           +   VV++ +                               M+ G    GL   +L LFN
Sbjct: 364 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ------------------HLDSMYRKYG 362
           +M +  +KP D T+ G + AC   G +  G Q                   L +MY K G
Sbjct: 424 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 483

Query: 363 IIPDAK------------HYTCVVDMLGRTGRLDEAYKLAKSI---QVDPDGGPLLWGTL 407
            + DA+             +  ++  LG+ G   EA +L   +    +DPD    L  T+
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFL--TI 541

Query: 408 LSASRLHGRVD 418
           L+A    G VD
Sbjct: 542 LTACNHAGLVD 552



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 132/310 (42%), Gaps = 45/310 (14%)

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+ V   +++ A A+ +    A+ +F         RP+ +   ++I+A   +  L +   
Sbjct: 123 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 182

Query: 252 A--HGVVVRSGCEFNDVVASALVDMYAKCGSVNYS---DKVFNRISNPSVVTYTSMIVGA 306
              H  V++SG      V++AL+ +Y KC +   S    KV + + +   +T+T+M+VG 
Sbjct: 183 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242

Query: 307 AKYG------------LGRF-------------------SLDLFNEMISRGIKPNDVTFV 335
            + G             G+F                   + +LF  M+S  +  ++ TF 
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 336 GVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYT--CVVDMLGRTGRLDEAYKLAKS 392
            VL AC+++G    G   H   +  +   +P+A       +V +  + G++  A ++  +
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + +      + W T+LS     G +D AVE    +   N     +++ + + Y   G  E
Sbjct: 363 MNLK---DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL---SWMVMVSGYVHGGLSE 416

Query: 453 NVHSLRSEMK 462
           +   L ++M+
Sbjct: 417 DALKLFNQMR 426


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 324/589 (55%), Gaps = 35/589 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           S+H   +K+    + F    L+  Y ++     A +LF     PNV  YTSL+ G+++ G
Sbjct: 45  SIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFG 104

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A+ LF +M+   V  + +    ++KAC +   L +GK++H  +   G   +  +  
Sbjct: 105 SYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIAL 164

Query: 168 SLVDMYGKCNDVDGARRVFD-------------------------------LMGCRNVVS 196
            LV++YGKC  ++ AR++FD                                MG R+ V 
Sbjct: 165 KLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVC 224

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WT +I    +N + +  LE+FRE   +  + PN+     V++ACA LG L  G+  H  +
Sbjct: 225 WTMVIDGLVRNGEFNRGLEVFREMQVKGVE-PNEVTFVCVLSACAQLGALELGRWIHAYM 283

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            + G E N  VA AL++MY++CG ++ +  +F+ +    V TY SMI G A +G    ++
Sbjct: 284 RKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAV 343

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           +LF+EM+   ++PN +TFVGVL+ACSH GLVD G +  +SM   +GI P+ +HY C+VD+
Sbjct: 344 ELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDI 403

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR GRL+EA+     + V+ D   L   +LLSA ++H  + +  + +  L E  +  + 
Sbjct: 404 LGRVGRLEEAFDFIGRMGVEADDKMLC--SLLSACKIHKNIGMGEKVAKLLSEHYRIDSG 461

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +++ LSN YA  G W     +R +M++ GI KEPGCS +E+ +  + F++G+        
Sbjct: 462 SFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKR 521

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +   L EL    K  GY+   T +   D++DE +E  + +HSERLA+ +GL+S     T+
Sbjct: 522 IYKKLEELNYLTKFEGYLPA-TEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTL 580

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ KNLR+C DCH + KLI+ I  R  VVRD NRFHHF NG CSC D+W
Sbjct: 581 RVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/501 (39%), Positives = 302/501 (60%), Gaps = 10/501 (1%)

Query: 108  QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            +P++AL L ++    L  P+  T+  +I+AC+ L  L  G+ +H      GF   + V +
Sbjct: 787  RPRVALELHRR---RLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQN 843

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            SLV +YG C   + A +VFD M  R  N+VSW S++ + A N + +E L +F E      
Sbjct: 844  SLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM-LGVD 902

Query: 226  DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
              P+   + SV+ ACA  G L  G+  H  V + G   N  V++AL+D+YAKCGSVN + 
Sbjct: 903  FAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDAR 962

Query: 286  KVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            ++F  +    +VV++TS+IVG A  G G+ +L+LF+ M    + P ++T VGVL+ACSH 
Sbjct: 963  RIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHC 1022

Query: 345  GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            GLVD+G ++ D M   YGI P  +H  C+VD+LGR GR++EAY    ++ ++P+   ++W
Sbjct: 1023 GLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNA--VVW 1080

Query: 405  GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
             TLL +  +H ++++   A  +L+E +   +  YV LSN YA  G W +VH LR  M + 
Sbjct: 1081 RTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKD 1140

Query: 465  GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
             + K PG S VE+R+  Y F  G+       ++  +L E+  +++  GY+  +T  V  D
Sbjct: 1141 RVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIP-RTSNVLAD 1199

Query: 525  VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
            +E+E +E  +  HSERLA+AF L+    GI IRI+KNLRMC DCH  F LIS + +R+ +
Sbjct: 1200 IEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREII 1259

Query: 585  VRDVNRFHHFRNGSCSCGDFW 605
            VRD +RFHHF+ G+CSC D+W
Sbjct: 1260 VRDRSRFHHFQGGACSCKDYW 1280



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 170/345 (49%), Gaps = 44/345 (12%)

Query: 8    NLIFTLAASS------LTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGF 58
            N +  +AA S      L    +R +      +   +Q C  L++L     +H+E  K+GF
Sbjct: 776  NTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGF 835

Query: 59   LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMAGYINMGQPQIALL 114
            ++  F  N L++ Y      + A ++FDEM  P    N+VS+ S++  +   G+P   L 
Sbjct: 836  VTLVFVQNSLVHLYGACGLFESAHKVFDEM--PVRGRNLVSWNSMLNSFAANGRPNEVLT 893

Query: 115  LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
            +F +MLG    P+ FT  +V+ AC+    L  G+++H ++E  G   N  V ++L+D+Y 
Sbjct: 894  VFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYA 953

Query: 175  KCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR--PNQH 231
            KC  V+ ARR+F+ MG  R VVSWTS+IV  A N  G EALE+   F+   R++  P + 
Sbjct: 954  KCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALEL---FSLMEREKLVPTEI 1010

Query: 232  MLASVINACASLGRLVSG-------KVAHGVVVRS---GCEFNDVVASALVDMYAKCGSV 281
             +  V+ AC+  G +  G       K  +G+  R    GC         +VD+  + G V
Sbjct: 1011 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC---------MVDLLGRAGRV 1061

Query: 282  NYS-DKVFNRISNPSVVTYTSMIVGAA---KYGLGRFSLDLFNEM 322
              + D +      P+ V + +++   A   K  LG+ + +   E+
Sbjct: 1062 EEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVEL 1106


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 330/607 (54%), Gaps = 42/607 (6%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNT--FTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           +  L  C      A +H+ +L++G L  T       L   Y    +  ++  L     +P
Sbjct: 293 VSLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDP 352

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
             + YTS +  + + G    AL L   ML   + P   T +  + AC  L+    G+ +H
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLS---PGRALH 409

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD-------------LMGC------- 191
            +        +  V ++L+ MY +  D   AR +FD             ++ C       
Sbjct: 410 GYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469

Query: 192 ------------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
                       ++ V W ++I  + Q+ + +EAL +FR     S   P++  +  V++A
Sbjct: 470 DDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRM-LGSGVEPDEVTVVLVLSA 528

Query: 240 CASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            A LG + SGK  H  V  S   + +  V +AL+DMY KCGS+  +  VF+ I +  +V 
Sbjct: 529 VAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVV 588

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G A +G  R +L++F +   +G+ P D+TF+G+L+ACSHSG+V+EG +   SM 
Sbjct: 589 WNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSME 648

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R+YGI P  +HY C+VD+LGR G + EA+ L +S+++ PD   ++W +LL+A RLH  + 
Sbjct: 649 REYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDA--VMWVSLLAACRLHKNMS 706

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +  + ++ L+      +  Y+ LSN YA  G W  V  +RS MK +GI KEPGCS +EI 
Sbjct: 707 LGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEID 766

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
            + Y F AG+    R  E+  +L ++   +KE G+V  +T LV  D+++  +E+ + +HS
Sbjct: 767 REVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHV-PQTELVLHDLDEATKEKALAVHS 825

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LALAFGLIS   G TI+I+KNLR C DCH V KLIS I  R  V RD NRFHHF +GS
Sbjct: 826 EKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGS 885

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 886 CSCGDYW 892



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 156/362 (43%), Gaps = 76/362 (20%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL 75
           S +  Q    + HT +     L  C+ L    ++H    K     +++    L+  Y R 
Sbjct: 378 SDMLAQGLLPTAHTLS---ASLPACRGLSPGRALHGYAFKLALAGDSYVATALLGMYARA 434

Query: 76  KKTQVARQLFDEML-EPNVVSYTSLMA-------------------------------GY 103
                AR LFD+ML +P+VVS T+++                                GY
Sbjct: 435 GDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGY 494

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE-TFGFQYN 162
              G+P  AL LF++MLG+ V P+E T   V+ A + L  + +GK +H++++ +   Q +
Sbjct: 495 TQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLS 554

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V ++L+DMY KC  +  A  VF  +G +++V W ++I  +A +    +ALEMF     
Sbjct: 555 VRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF----V 610

Query: 223 QSRDR---PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
           QSR++   P       ++NAC           +H  +V  G EF          M  + G
Sbjct: 611 QSREQGLWPTDITFIGLLNAC-----------SHSGMVEEGREF-------FQSMEREYG 652

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
                        +P +  Y  M+    + GL + +  L   M    I P+ V +V +L 
Sbjct: 653 ------------IDPKIEHYGCMVDLLGRAGLIKEAFCLVQSM---KITPDAVMWVSLLA 697

Query: 340 AC 341
           AC
Sbjct: 698 AC 699


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 339/636 (53%), Gaps = 43/636 (6%)

Query: 9   LIFTLAASSLTRQNKRSSCH------TKAHFIQQLQECKHLISLASVHSEILKSGFLSNT 62
           ++F L++  + +   R+  H      ++   I  L+       L  VH++I+K+    + 
Sbjct: 1   MLFALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSI 60

Query: 63  FTLNHLINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
             L  +            A+Q+F   E  +P    + S +        P  A++LF ++ 
Sbjct: 61  LPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLR 120

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V P+ FT ++V++AC  L DL  G+ +H  +E  GF+ NL + + +V +Y  C ++ 
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 181 GARRVFDLMGCRNVV-------------------------------SWTSIIVAHAQNAQ 209
            AR +F+ M  R+VV                               SWTS+I  + Q  +
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+ +F +   ++  + N+  + +V+ ACA LG L  G   H    R G + N  +++
Sbjct: 241 AKEAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISN 299

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L+DMY KCG +  + KVF  +   +VV++++MI G A +G    +L LF++M   GI+P
Sbjct: 300 TLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEP 359

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VTF+G+LHACSH GL+ EG +   SM R YGIIP  +HY C+VD+L R G L EA++ 
Sbjct: 360 NGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEF 419

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             ++ + P+G  ++WG LL A R+H  V++A EA   L+E +      YV LSN YA AG
Sbjct: 420 ILNMPMKPNG--VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAG 477

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            WE+   +R  MK   + K PG S + +    + F AG        ++     EL  +M+
Sbjct: 478 RWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMR 537

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
            +GYV   T +V +D+E+  + + V  HSE+LAL FGL++ P    IRIMKNLR+C DCH
Sbjct: 538 LKGYVPN-TSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCH 596

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             FKLIS IV R+ VVRD NRFH F + SCSC D+W
Sbjct: 597 SAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 305/521 (58%), Gaps = 10/521 (1%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           + +P+  S  +++    +   P+IAL L ++ L     P+  T+  +++AC+ L  L  G
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACTRLLALREG 139

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHA 205
           + +H      G    + V +SLV  YG C   + A RVFD +    RN+VSW S++   A
Sbjct: 140 ESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFA 199

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
            N + +E L +FRE   ++   P+   + SV+ ACA +G L  G+  H    + G   N 
Sbjct: 200 ANGRPNEVLTIFRE-TLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNS 258

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
            V +AL+D+YAKCG V  + KVF  +    +VV++TS+IVG A  G G+ +L+LF  M  
Sbjct: 259 HVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMER 318

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
             + P D+T VGVL+ACSH GLVD+G ++ + M  KYGI P  +H  C+VD+LGR GR++
Sbjct: 319 ERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVE 378

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           EA+    ++ V+P+   ++W TLL A  +H ++++   A  +L+E +   +  YV LSN 
Sbjct: 379 EAHNYITTMPVEPNA--VVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNL 436

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
           YA  G W + H LR  M   G+ K PG S VE+R+  Y F  G+       ++   L E+
Sbjct: 437 YAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEI 496

Query: 505 ERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRM 564
             +++ +GYV  +T  V  D+E+E +E  +  HSERLA+AF L+    G  IRI+KNLRM
Sbjct: 497 AERLRCQGYVP-RTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRM 555

Query: 565 CRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           C DCH V KLIS + +R+ +VRD +RFHHF+ G CSC D+W
Sbjct: 556 CGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 17/256 (6%)

Query: 8   NLIFTLAASS------LTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGF 58
           N +  +AASS      L    +R +      +   LQ C  L++L    S+H+E  K+G 
Sbjct: 92  NTVLRIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTRLLALREGESLHAEAAKNGL 151

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYTSLMAGYINMGQPQIALLLF 116
           ++  F  N L++ Y      + A ++FDE+  LE N+VS+ S+M G+   G+P   L +F
Sbjct: 152 VALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIF 211

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           ++ L   + P+ FT  +V+ AC+ +  L  G+++H      G   N  V ++L+D+Y KC
Sbjct: 212 RETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKC 271

Query: 177 NDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR--PNQHML 233
             V+ A +VF+ MG  R VVSWTS+IV  A N  G +ALE+   F    R+R  P    +
Sbjct: 272 GGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALEL---FGLMERERLIPTDITM 328

Query: 234 ASVINACASLGRLVSG 249
             V+ AC+  G +  G
Sbjct: 329 VGVLYACSHCGLVDDG 344


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/575 (35%), Positives = 322/575 (56%), Gaps = 15/575 (2%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEPNVVSY 96
           C  +      H+ +L++  L N    + LI+ ++ L  +     AR+LF +M  P+    
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLIS-FLALSHSGDLNYARKLFTQMQNPDPFIC 79

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++ GY     P  A+ L+  M+   V  + +T+  V+ AC+ L  +  G++ H  +  
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  +L V ++L+  Y  C     A  VFD    R+VV+W  +I AH       +A ++
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDL 199

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV-----VRSGCEFNDVVASAL 271
             E       RP++  + S++ ACA LG L  GK  H            C+   V+ +AL
Sbjct: 200 LDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDL--VLETAL 257

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           VDMYAKCGS++ + +VF R+   +V T+ ++I G A +G G  ++ LF++M    + P+D
Sbjct: 258 VDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDD 317

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTF+ +L ACSH+GLVDEG+    +M  K+ I P  +HY CVVD+L R  ++D+A    +
Sbjct: 318 VTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIE 377

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           ++ +  +   +LW TLL A R  G  D+A +   ++IE        YV LSN YA   +W
Sbjct: 378 NMPIKANS--VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQW 435

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK-E 510
           ++   LR +MK  GI K PGCSW+E+    + F AG+    +  ++ +++ E+ R++  +
Sbjct: 436 DHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLD 495

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            G+V G   ++F D+E+E +E  + LHSE+LA+A GLIS P G  IRI+KNLR+C DCH 
Sbjct: 496 GGHVPGTANVLF-DIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHS 554

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K+ S +  R+ V RD +RFHHF+ GSCSC DFW
Sbjct: 555 FLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/579 (33%), Positives = 321/579 (55%), Gaps = 37/579 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T   ++  +VR      AR  F+E+     V + ++++GY+  G    A  LF++M+
Sbjct: 229 DELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMV 288

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKC 176
              + P+EFTF +++ AC+     + GK +H         F  +  L V ++LV +Y K 
Sbjct: 289 SKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKS 348

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR----------- 225
             +  A ++FD M  ++VVSW +I+  + ++     A  +F+E  Y+S            
Sbjct: 349 GKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYV 408

Query: 226 -------------------DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
                               +P  +  A  + AC  LG L  GK  H  +V+ G E ++ 
Sbjct: 409 HGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNS 468

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +AL+ MYA+CG+V  +  VF  + N   V++ +MI    ++G GR +L+LF++M+++G
Sbjct: 469 AGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQG 528

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           I P+ ++F+ +L AC+H+GLVD+G Q+ +SM R +GI P   HY  ++D+LGR GR+ EA
Sbjct: 529 IYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEA 588

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             L K++  +P   P +W  +LS  R++G +++   A++QL +   +    Y+ LSNTY+
Sbjct: 589 RDLIKTMPFEPT--PAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYS 646

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            AG W +   +R  M+  G+ KEPGCSW+E+ ++ + F  G+       EV   L  +  
Sbjct: 647 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGA 706

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           KM++ GYV   T     D+    +E ++  HSERLA++FGL+ +P G T+ ++KNL++C 
Sbjct: 707 KMRKLGYV-PDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICG 765

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH     +S  V R+ VVRDV RFHHF++G CSCG++W
Sbjct: 766 DCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 185/437 (42%), Gaps = 82/437 (18%)

Query: 68  LINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG--NL 123
           L++ Y    + + +   FD   +   + V + ++++ +        A+ +F+ +L   + 
Sbjct: 95  LVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDS 154

Query: 124 VWPNEFTFATVIKACSMLADLITG--KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           + P++++F +++ A   + DL      Q+H  +   G    L V ++L+ +Y KC D  G
Sbjct: 155 LRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC-DAPG 213

Query: 182 ----ARRVFDLMGCRNVVSWTSIIVAHAQNAQGH-------------------------- 211
               AR+V D M  ++ ++WT+I+V H +    H                          
Sbjct: 214 VTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQ 273

Query: 212 -----EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
                EA E+FR      R  P++    S+++ACA+ G  + GK  HG  +R   +F   
Sbjct: 274 SGMCAEAFELFRRM-VSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 267 VA----SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS--------------------- 301
            A    +ALV +Y+K G +  + K+F+ ++   VV++ +                     
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEM 392

Query: 302 ----------MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
                     M+ G    GL   +L LFN+M S  +KP D T+ G + AC   G +  G 
Sbjct: 393 PYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGK 452

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
           Q L +   + G          ++ M  R G + +A  +     V P+   + W  ++SA 
Sbjct: 453 Q-LHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLV---FLVMPNVDSVSWNAMISAL 508

Query: 412 RLHGRVDIAVEASNQLI 428
             HG    A+E  +Q++
Sbjct: 509 GQHGHGREALELFDQMV 525



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 149/303 (49%), Gaps = 10/303 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +V ++I  S  L +  + N +++ Y+       A ++F EM   + +S+  +++GY++ G
Sbjct: 352 AVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGG 411

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL LF +M    V P ++T+A  + AC  L  L  GKQ+H H+   GF+ +    +
Sbjct: 412 LAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGN 471

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+ MY +C  V  AR VF +M   + VSW ++I A  Q+  G EALE+F +   Q    
Sbjct: 472 ALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGI-Y 530

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDK 286
           P++    +++ AC   G +  G      + R  G    +   + L+D+  + G +  +  
Sbjct: 531 PDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARD 590

Query: 287 VFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           +   +   P+   + +++ G    G   LG ++ D   +M+      +D T++ + +  S
Sbjct: 591 LIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPE----HDGTYILLSNTYS 646

Query: 343 HSG 345
            +G
Sbjct: 647 AAG 649



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 140/342 (40%), Gaps = 50/342 (14%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           V  +SLV  Y     +  +   FD +    R+ V   ++I A A+ +    A+ +FR   
Sbjct: 90  VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSL- 148

Query: 222 YQSRD--RPNQHMLASVINACASLGRLVSGKVA--HGVVVRSGCEFNDVVASALVDMYAK 277
             S D  RP+ +   S+++A   +  L        H  V + G      V++AL+ +Y K
Sbjct: 149 LASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMK 208

Query: 278 C----------------------------------GSVNYSDKVFNRISNPSVVTYTSMI 303
           C                                  G V+ +   F  I     V + +MI
Sbjct: 209 CDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMI 268

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYG 362
            G  + G+   + +LF  M+S+ I P++ TF  +L AC+++G    G   H   +  +  
Sbjct: 269 SGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPD 328

Query: 363 IIPDAKHYT--CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
            +P+A       +V +  ++G++  A K+  S+ +      + W T+LS     G +D A
Sbjct: 329 FVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK---DVVSWNTILSGYIESGCLDNA 385

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
                ++   ++    +++ + + Y   G  E+   L ++M+
Sbjct: 386 ARIFKEMPYKSEL---SWMVMVSGYVHGGLAEDALKLFNQMR 424


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 333/581 (57%), Gaps = 19/581 (3%)

Query: 33  FIQQLQECKHL---ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   ++ C  L   I+   +H  + K+G L   F    LI+ Y +      AR+LFDE  
Sbjct: 13  FPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENP 72

Query: 90  EPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +     V Y SL++GY    + +  ++LF +M    V  N  T   +++ C +  +L  G
Sbjct: 73  QSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLG 132

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
             +H     FG   +  V + L+ MY K  ++D  R++FD M  + +++W ++I  +AQN
Sbjct: 133 MCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQN 192

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
              +  LE+++E   +    P+   L  V+++CA LG L  GK     +   G   N  +
Sbjct: 193 GLANNVLELYKEMESKGFC-PDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFL 251

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            +ALV+MYA+CG++  +  +F+ +   SVV++T++I G   +G G  ++ LF+EMI  GI
Sbjct: 252 NNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGI 311

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           KP+   FV VL ACSH+GL ++G+ +   M RKYG+ P A+HY+C+VD+LGR GRL+EA 
Sbjct: 312 KPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEAR 371

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +L +S+QV  DG   LWG LL A ++H  V++A  A  Q+IE        YV LSN Y  
Sbjct: 372 ELIESMQVRADGA--LWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTE 429

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           AG  E +  +R  M++  + K+PGCS+VE + + + F+AG+    + +E+   L ELE  
Sbjct: 430 AGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENL 489

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIV---GLHSERLALAFGLISIPKGITIRIMKNLRM 564
           +K+    G K        + E REE +   G+HSE+LA+AF L++  K   I I+KNLR+
Sbjct: 490 VKDLD--GCKKN------DHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRI 541

Query: 565 CRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           C DCH   KL+S IV+R FVVRD  RFHHF+NG CSC ++W
Sbjct: 542 CGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 171/334 (51%), Gaps = 8/334 (2%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML +   PN FTF   IK+C+ L+  ITGKQ+H H+   G      V +SL+ MYGKC+ 
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 179 VDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
           +D AR++FD      +  V + S++  +A N++  + + +F E      +     ML  +
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLG-L 119

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           +  C   G L  G   HG  V+ G + +  V + L+ MY K G ++   K+F+ +    +
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           +T+ +MI G A+ GL    L+L+ EM S+G  P+ +T VGVL +C+H G +  G + ++ 
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVG-KEVER 238

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
               +G   +      +V+M  R G L +A  +   +   P    + W  ++    +HG+
Sbjct: 239 KMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGM---PVKSVVSWTAIIGGYGMHGQ 295

Query: 417 VDIAVEASNQLIESN-QQVANAYVTLSNTYALAG 449
            ++AV   +++I    +    A+V++ +  + AG
Sbjct: 296 GEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAG 329


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 315/541 (58%), Gaps = 7/541 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N +++ +    + + A +LF++M   NV+S+TS++ G  + G+   AL++F KML +   
Sbjct: 178 NSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFK- 236

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
               T A  + AC+ +     G QIH  I   G+ +N  + +SL+  Y  C  +D A  +
Sbjct: 237 ATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSI 296

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+    RNVV WT+++  +  N +  +AL++F+     S   PNQ  L S +N+C  L  
Sbjct: 297 FNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSV-LPNQSSLTSALNSCCGLEA 355

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           +  G+  H V  + G E +  V+++LV MY KCG +N    VF R+S  +VV++ S+IVG
Sbjct: 356 VDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVG 415

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A++G GR++L LF +MI   + P+++T  G+L AC HSG++ +G        + +GI  
Sbjct: 416 CAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEM 475

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP-DGGPLLWGTLLSASRLHGRVDIAVEAS 424
             +HY+ +VD+LGR G+L+EA  L   I + P     ++W  LLS+S  H  V +A  A+
Sbjct: 476 TNEHYSSMVDLLGRYGQLEEAEAL---IHIMPGKANYMVWLALLSSSINHSNVHVAERAA 532

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
             +++     + AY  LSN YA  G+W  V  +R +MK  GI K+PG SW+ I+   + F
Sbjct: 533 KCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNF 592

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
            +G+       ++   L  L  K+KE GYV       F DVE E +EE++  HSERLA+ 
Sbjct: 593 ISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPK-FSFHDVETEQKEEMLSYHSERLAIG 651

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGLIS  +G TI +MKNLR+C DCH+  KL S +V R+ VVRD +RFHHF NG+CSCGD+
Sbjct: 652 FGLISTVEGSTIIVMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDY 711

Query: 605 W 605
           W
Sbjct: 712 W 712



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 2/242 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+K+G+  N +    LI+ Y   K    A  +F++ +  NVV +T+L+ GY    +
Sbjct: 261 IHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCR 320

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL +F+ M+   V PN+ +  + + +C  L  +  G+++H      G + ++ V +S
Sbjct: 321 HTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNS 380

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY KC  ++    VF  M  +NVVSW SIIV  AQ+  G  AL +F +   ++R  P
Sbjct: 381 LVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQM-IRTRVDP 439

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKV 287
           ++  LA +++AC   G L  G+       ++ G E  +   S++VD+  + G +  ++ +
Sbjct: 440 DEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEAL 499

Query: 288 FN 289
            +
Sbjct: 500 IH 501



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 169/347 (48%), Gaps = 32/347 (9%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM-LGNLV 124
           N+L++ ++R  +   AR LF++M  P V  YT ++ GY + G+ + AL LF +M + +L+
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 125 WPNE-----FTFATVIKACSML-----ADLITGKQIHTHIETFG--------FQY----N 162
             N           +  AC+M       ++++   I   +  FG        F+     +
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           +   +S+V  +     V+ A  +F+ M  RNV+SWTS+I     N +  EAL +F +   
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-- 231

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            +  +     LA  + ACA++     G   HG++V++G  FN+ ++++L+  YA C  ++
Sbjct: 232 LASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLID 291

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLG---RFSLDLFNEMISRGIKPNDVTFVGVLH 339
            +  +FN   + +VV +T+++ G   YGL      +L +F  M+   + PN  +    L+
Sbjct: 292 NASSIFNDNVSRNVVVWTALLTG---YGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALN 348

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +C     VD G + + ++  K G+  D      +V M  + G +++ 
Sbjct: 349 SCCGLEAVDRG-REVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDG 394



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 2/167 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+   K G  S+ F  N L+  Y +         +F  M   NVVS+ S++ G    G 
Sbjct: 362 VHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGF 421

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
            + AL LF +M+   V P+E T A ++ AC     L  G+    H  + FG +      S
Sbjct: 422 GRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYS 481

Query: 168 SLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEA 213
           S+VD+ G+   ++ A  +  +M G  N + W +++ +   ++  H A
Sbjct: 482 SMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVA 528


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 329/574 (57%), Gaps = 20/574 (3%)

Query: 43  LISLASVHSEILKSGFLSN--------TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           L +   +H+  L++G  ++         F L  L    +R     ++R L    L+P  +
Sbjct: 28  LAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPL 87

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           +    +A      +P++AL L ++    L  P+  T+  +I+AC+ L  L  G+ +H   
Sbjct: 88  NTVLRIAA--GSPRPRVALELHRR---RLALPDTHTYPPLIQACARLLALREGECLHAEA 142

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHE 212
              GF   + V +SLV +YG C   + A +VFD M  R  N+VSW S++ + A N + +E
Sbjct: 143 AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 202

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
            L +F E        P+   + SV+ ACA  G L  G+  H  V + G   N  V++AL+
Sbjct: 203 VLTVFWEM-LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALI 261

Query: 273 DMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           D+YAKCGSVN + ++F  +    +VV++TS+IVG A  G G+ +L+LF+ M    + P +
Sbjct: 262 DLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTE 321

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T VGVL+ACSH GLVD+G ++ D M   YGI P  +H  C+VD+LGR GR++EAY    
Sbjct: 322 ITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYII 381

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           ++ ++P+   ++W TLL +  +H ++++   A  +L+E +   +  YV LSN YA  G W
Sbjct: 382 TMPLEPNA--VVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMW 439

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
            +VH LR  M +  + K PG S VE+R+  Y F  G+       ++  +L E+  +++  
Sbjct: 440 ADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRRE 499

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY+  +T  V  D+E+E +E  +  HSERLA+AF L+    GI IRI+KNLRMC DCH  
Sbjct: 500 GYIP-RTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVA 558

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           F LIS + +R+ +VRD +RFHHF+ G+CSC D+W
Sbjct: 559 FNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 170/345 (49%), Gaps = 44/345 (12%)

Query: 8   NLIFTLAASS------LTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGF 58
           N +  +AA S      L    +R +      +   +Q C  L++L     +H+E  K+GF
Sbjct: 88  NTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGF 147

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMAGYINMGQPQIALL 114
           ++  F  N L++ Y      + A ++FDEM  P    N+VS+ S++  +   G+P   L 
Sbjct: 148 VTLVFVQNSLVHLYGACGLFESAHKVFDEM--PVRGRNLVSWNSMLNSFAANGRPNEVLT 205

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           +F +MLG    P+ FT  +V+ AC+    L  G+++H ++E  G   N  V ++L+D+Y 
Sbjct: 206 VFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYA 265

Query: 175 KCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR--PNQH 231
           KC  V+ ARR+F+ MG  R VVSWTS+IV  A N  G EALE+   F+   R++  P + 
Sbjct: 266 KCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALEL---FSLMEREKLVPTEI 322

Query: 232 MLASVINACASLGRLVSG-------KVAHGVVVRS---GCEFNDVVASALVDMYAKCGSV 281
            +  V+ AC+  G +  G       K  +G+  R    GC         +VD+  + G V
Sbjct: 323 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC---------MVDLLGRAGRV 373

Query: 282 NYS-DKVFNRISNPSVVTYTSMIVGAA---KYGLGRFSLDLFNEM 322
             + D +      P+ V + +++   A   K  LG+ + +   E+
Sbjct: 374 EEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVEL 418


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 322/557 (57%), Gaps = 6/557 (1%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+  +K    ++    N L++ Y++    + + ++F+ M   + +S+T+++A +    + 
Sbjct: 390 HAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRH 449

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             AL +  ++    +  +     ++++ C  L  +   KQ+H +    G   +L++ + L
Sbjct: 450 SEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRL 508

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +D+YG+C + D +  +F  +  +++VSWTS+I     N + + A+ +F E   ++  +P+
Sbjct: 509 IDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQ-KANIQPD 567

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L S++ A A L  L  GK  HG ++R        V S+LVDMY+ CGS+NY+ +VF 
Sbjct: 568 SVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFE 627

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
           R     VV +T+MI     +G G+ ++DLF  M+  G+ P+ V+F+ +L+ACSHS LV+E
Sbjct: 628 RAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEE 687

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G  +LD M  KY + P  +HY CVVD+LGR+G+ +EAY+  K++ +DP     +W  LL 
Sbjct: 688 GKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSA--VWCALLG 745

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A R+H    +AV A+N+L+E        Y+ +SN +A  G+W N    R+ M   G+ K 
Sbjct: 746 ACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKN 805

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSL-LRELERKMKERGYVGGKTGLVFVDVEDE 528
           P CSW+EI +  + F +G+    R SE + L L E+   ++  G     T  V  D  +E
Sbjct: 806 PACSWIEIGNNIHTFTSGD-YCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEE 864

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            + +++  HSER+A+AFGLIS   G+ IRI KNLR+C DCH+  KL+S + ERD VVRD 
Sbjct: 865 EKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDA 924

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF  GSCSC DFW
Sbjct: 925 NRFHHFSGGSCSCEDFW 941



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 201/398 (50%), Gaps = 12/398 (3%)

Query: 37  LQECKHL--ISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C  L  +SL   +H+ +LK G   N    N L+  Y +  +   A ++F ++ E + 
Sbjct: 274 LQVCAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKDY 332

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+ S+++ Y+       A+  F +ML +   P+     ++  A   L+ L  G++ H +
Sbjct: 333 ISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAY 392

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                   +L V ++L+DMY KC  ++ + +VF+ MG R+ +SWT+I+   AQ+++  EA
Sbjct: 393 AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEA 452

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LEM  E   +     +  M+ S++  C  L  +   K  H   +R+G   + ++ + L+D
Sbjct: 453 LEMILELQKEG-IMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLID 510

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y +CG  ++S  +F R+    +V++TSMI      G    ++ LF EM    I+P+ V 
Sbjct: 511 IYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVA 570

Query: 334 FVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
            V +L A +    + +G Q H   + R + I  +    + +VDM    G ++ A ++ + 
Sbjct: 571 LVSILVAIAGLSSLTKGKQVHGFLIRRNFPI--EGPVVSSLVDMYSGCGSMNYAIRVFER 628

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            +       +LW  +++A+ +HG    A++   +++++
Sbjct: 629 AKCKD---VVLWTAMINATGMHGHGKQAIDLFKRMLQT 663



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 187/383 (48%), Gaps = 16/383 (4%)

Query: 49  VHSEILKSGFLS---NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           VH+  + +G L+   + F    L+  Y R  +   AR+LF+ M    V S+ +L+  Y++
Sbjct: 79  VHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLS 138

Query: 106 MGQPQIALLLFQKMLGNLV---WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            G    A+ ++  M  +      P+  T A+V+KAC    D   G ++H      G   +
Sbjct: 139 SGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKS 198

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +V ++L+ MY KC  +D A RVF+ +    R+V SW S++    QN +  EAL +FR  
Sbjct: 199 TLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFR-- 256

Query: 221 NYQSRDRP-NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
             QS   P N +   +V+  CA LG L  G+  H  +++ G E N +  +AL+ MYAK G
Sbjct: 257 GMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYAKYG 315

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            V+ + +VF +I+    +++ SM+    +      ++D F EM+  G +P+    V +  
Sbjct: 316 RVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSS 375

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           A  H   ++ G +   +   K  +  D +    ++DM  + G ++ + K+ +S+ +    
Sbjct: 376 ALGHLSRLNNG-REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH- 433

Query: 400 GPLLWGTLLSASRLHGRVDIAVE 422
             + W T+L+      R   A+E
Sbjct: 434 --ISWTTILACFAQSSRHSEALE 454



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 12/270 (4%)

Query: 147 GKQIHTHIETFGF---QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           G+Q+H H  T G      +  + + LV MYG+C  VD ARR+F+ M  R V SW +++ A
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 204 HAQNAQGHEALEMFREFNYQSR--DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           +  +    EA+ ++      +     P+   LASV+ AC + G    G   HG+ V+ G 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS--VVTYTSMIVGAAKYGLGRFSLDLF 319
           + + +VA+AL+ MYAKCG ++ + +VF  +   +  V ++ S++ G  + G    +L LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
             M S G   N  T V VL  C+  GL+  G + L +   K G   + +    +V M  +
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLG-RELHAALLKCGSELNIQCNALLV-MYAK 313

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
            GR+D A ++   I    +   + W ++LS
Sbjct: 314 YGRVDSALRVFGQI---AEKDYISWNSMLS 340


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/514 (39%), Positives = 296/514 (57%), Gaps = 5/514 (0%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           ++ S+TSL+AGY     P  AL L   ML     PN FTFA+++KA    A    G+QIH
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 64

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                + +  ++ V S+L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G 
Sbjct: 65  ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 124

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
             L MF E      +       +SV +A A +G L  GK  H  +++SG   +  V + +
Sbjct: 125 TTLLMFAEMQRNGFE-ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 183

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAK GS+  + KVF+ +    +VT+ SM+   A+YGLGR ++  F EM   G+  N 
Sbjct: 184 LDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 243

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +TF+ +L ACSH GLV EG Q+ D M +++ + P+  HY  VVD+LGR G L++A     
Sbjct: 244 ITFLSILTACSHGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIF 302

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + + P     +WG LL + R+H    I   A++ + E +       V L N YA  G+W
Sbjct: 303 KMPMKPTAA--VWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQW 360

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           +    +R  MK TG+ KEP CSWVEI +  + F A +    R  E+     E+  ++++ 
Sbjct: 361 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKA 420

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V + V+++ R+  +  HSE++ALAF LI++P G TIRIMKN+R+C DCH  
Sbjct: 421 GYVP-NTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSA 479

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           F+ IS + ER+ VVRD NRFHHF +GSCSCGD+W
Sbjct: 480 FRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  R++ SWTS+I  +AQN    EAL +          +PN    AS++ A  +      
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRF-KPNGFTFASLLKAAGASASSGI 59

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G+  H + V+     +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G A+
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            G G  +L +F EM   G +    T+  V  A +  G +++G + + +   K G    A 
Sbjct: 120 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAF 178

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL-WGTLLSASRLHG 415
               ++DM  ++G + +A K+   +    D   L+ W ++L+A   +G
Sbjct: 179 VGNTILDMYAKSGSMIDARKVFDHV----DKKDLVTWNSMLTAFAQYG 222



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 70/134 (52%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++KSG   + F  N +++ Y +      AR++FD + + ++V++ S++  +   G 
Sbjct: 164 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGL 223

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+  F++M    V  N+ TF +++ ACS    +  GKQ    ++    +  +    +
Sbjct: 224 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVT 283

Query: 169 LVDMYGKCNDVDGA 182
           +VD+ G+   ++ A
Sbjct: 284 VVDLLGRAGLLNDA 297


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 311/527 (59%), Gaps = 6/527 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           ARQLFDEM +P    + ++M GY+  G P  A+ ++ KM    V P+ FTF  VIKAC+ 
Sbjct: 88  ARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAE 147

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           LA+L  G  +H H+   G ++   V + L+ MY K  ++  A  +F  M  R++V+W ++
Sbjct: 148 LAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNAL 207

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I    Q     +AL+ FRE    +  +P+   + S ++AC  LG L +G+  +      G
Sbjct: 208 IAVCVQTGFSSKALQSFREMG-MAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEG 266

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            + N +V +A +DM AKCG ++ +  +F+ +   +V++++++I G A  G    +L LF+
Sbjct: 267 IDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFS 326

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK--YGIIPDAKHYTCVVDMLG 378
            M ++G++PN VTF+ VL ACSH+G V+EG Q+ + M +     I P  +HY C+VD+LG
Sbjct: 327 RMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLG 386

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R+G L+EAY   K + ++ D  P +WG LL A  +H  + +    ++ L E   ++A+ +
Sbjct: 387 RSGHLEEAYNFIKIMPIEAD--PGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYH 444

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LSN YA AG W  V  +R  MK+ G  K    S VE   + +  Y G+    + + +L
Sbjct: 445 VLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASIL 504

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           + L +L ++MK  GY+  +T  VF DVEDE +E  +  HSE+LA+AF LI+      IR+
Sbjct: 505 AKLEDLLKQMKSMGYIP-ETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRV 563

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           MKNLR+C DCH   KL+S I  R+ ++RD NRFHHF+NG CSC DFW
Sbjct: 564 MKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 327/560 (58%), Gaps = 10/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+   S+ +    L++ Y +      A ++FD M   +++ + +L++G  + G+
Sbjct: 232 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 291

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A  +F  +    +  N  T A V+K+ + L      +Q+H   E  GF ++  V + 
Sbjct: 292 HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNG 351

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y KC+ +  A RVF+     ++++ TS+I A +Q   G  A+++F E   +  + P
Sbjct: 352 LIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE-P 410

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  +L+S++NACASL     GK  H  +++     +    +ALV  YAKCGS+  ++  F
Sbjct: 411 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 470

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +    VV++++MI G A++G G+ +L+LF  M+  GI PN +T   VL AC+H+GLVD
Sbjct: 471 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 530

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  ++ +SM   +GI    +HY+C++D+LGR G+LD+A +L  S+    +    +WG LL
Sbjct: 531 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS--VWGALL 588

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            ASR+H   ++   A+ +L     + +  +V L+NTYA +G W  V  +R  MK + I K
Sbjct: 589 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKK 648

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EP  SWVE++D+ + F  G+       E+ S L EL   M + GY+      V VD+ D 
Sbjct: 649 EPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN----VDVDLHDL 704

Query: 529 AREE---IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            R E   ++  HSERLA+AF L+S P G  IR+ KNLR+CRDCH  FK IS+IV R+ ++
Sbjct: 705 DRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIII 764

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD+NRFHHFR+G+CSCGD+W
Sbjct: 765 RDINRFHHFRDGTCSCGDYW 784



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 177/344 (51%), Gaps = 3/344 (0%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYIN 105
           A VH+  + +GF S+ F  N L+  Y        AR++FDE   E N VS+  LM+ Y+ 
Sbjct: 27  AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 86

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
             Q   A+ +F +M+ + + P EF F+ V+ AC+   ++  G+Q+H  +   G++ ++  
Sbjct: 87  NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 146

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LVDMY K   VD A  +F+ M   +VVSW ++I     N   H A+E+  +    S 
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK-SSG 205

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             PN  ML+S++ ACA  G    G+  HG ++++  + +D +   LVDMYAK   ++ + 
Sbjct: 206 LVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAM 265

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+ +S+  ++ + ++I G +  G    +  +F  +   G+  N  T   VL + + S 
Sbjct: 266 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA-SL 324

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
                 + + ++  K G I DA     ++D   +   L +A ++
Sbjct: 325 EAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRV 368



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 13/297 (4%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           NEF    V+K    + D   G Q+H      GF  ++ V ++LV MYG    +D ARRVF
Sbjct: 9   NEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 187 DLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           D  G  RN VSW  ++ A+ +N Q  +A+++F E  + S  +P +   + V+NAC     
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW-SGIQPTEFGFSCVVNACTGSRN 124

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           + +G+  H +VVR G E +   A+ALVDMY K G V+ +  +F ++ +  VV++ ++I G
Sbjct: 125 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 184

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
               G    +++L  +M S G+ PN      +L AC+ +G  D G Q    M +      
Sbjct: 185 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA--- 241

Query: 366 DAKHYTCV--VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           D+  Y  V  VDM  +   LD+A K+   +        +LW  L+S     GR D A
Sbjct: 242 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS---HRDLILWNALISGCSHGGRHDEA 295



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAA 307
           G   H + + +G   +  VA+ALV MY   G ++ + +VF+   S  + V++  ++    
Sbjct: 26  GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 85

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           K      ++ +F EM+  GI+P +  F  V++AC+ S  +D G Q + +M  + G   D 
Sbjct: 86  KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDV 144

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                +VDM  + GR+D A  + + +   PD   + W  L+S   L+G    A+E   Q+
Sbjct: 145 FTANALVDMYVKMGRVDIASVIFEKM---PDSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 428 IESNQQVANAYVTLSNTYALAG 449
            +S+  V N ++  S   A AG
Sbjct: 202 -KSSGLVPNVFMLSSILKACAG 222



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 37/208 (17%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL-------- 84
            I  L +C H      +  E+L+ G   + F L+ L+N    L   +  +Q+        
Sbjct: 383 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 442

Query: 85  ---------------------------FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
                                      F  + E  VVS+++++ G    G  + AL LF 
Sbjct: 443 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG 502

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKC 176
           +M+   + PN  T  +V+ AC+    +   K+  ++  E FG        S ++D+ G+ 
Sbjct: 503 RMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRA 562

Query: 177 NDVDGARRVFDLMGCR-NVVSWTSIIVA 203
             +D A  + + M  + N   W +++ A
Sbjct: 563 GKLDDAMELVNSMPFQANASVWGALLGA 590


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 332/606 (54%), Gaps = 26/606 (4%)

Query: 13  LAASSLTRQNKRSSCHTKAH-FIQQLQECKHL---ISLASVHSEILKSGFLSNTFTLNHL 68
           L A SL  Q  R      A  F   L+ C  L   I  +  H +I K G +   F    L
Sbjct: 22  LQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGL 81

Query: 69  INCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
           I+ Y +      AR++F+E        V Y +L++GY++  +   A+LLF++M    V  
Sbjct: 82  ISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPV 141

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N  T   +I AC    +L  G  +H     +GF  ++ V +  + MY KC  V+ A+++F
Sbjct: 142 NSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLF 201

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  + ++SW +++  +AQN      LE++R  +      P+   L  V+++CA+LG  
Sbjct: 202 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV-HPDPVTLVGVLSSCANLGAQ 260

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G      +  SG   N  + +AL++MYA+CG++  +  VF+ +   ++V++T++I G 
Sbjct: 261 SVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGY 320

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +G G  ++ LF EMI  GI+P+   FV VL ACSH+GL D+G+++   M R Y + P 
Sbjct: 321 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 380

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HY+C+VD+LGR GRL EA  L +S+ + PDG   +WG LL A ++H  V++A  A  +
Sbjct: 381 PEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGA--VWGALLGACKIHKNVELAELAFER 438

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           +IE   +    YV LSN Y+ A   + V  +R  MK   + K+PGCS+VE++ + + F  
Sbjct: 439 VIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIV 498

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI-------VGLHSE 539
           G+    +  E+  +L ELE  + +           F   E + REE        VG+HSE
Sbjct: 499 GDRNHLQSDEIYRVLEELEAIIMQE----------FGKPEKDNREESNKDGFTRVGVHSE 548

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL++   G  + I+KNLR+C DCH  FK++S IV R   VRD  RFHHFRNGSC
Sbjct: 549 KLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSC 608

Query: 600 SCGDFW 605
           SC D+W
Sbjct: 609 SCKDYW 614


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 322/560 (57%), Gaps = 10/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+ F+ N F  N  ++ Y +       R+LF+EM E + VSY  ++  Y  +G+
Sbjct: 263 IHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGK 322

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + ++ LFQ++         F F T++   +   DL  G+Q+H  +       +  V +S
Sbjct: 323 VKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNS 382

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC   + A R+F  +  R+ V WT++I A+ Q       L++F E   ++    
Sbjct: 383 LVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMR-RANVSA 441

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +Q   A V+ A A+L  ++ GK  H  V+RSG   N     AL+DMYA C S+  + K F
Sbjct: 442 DQATFACVLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTF 500

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +S  +VVT+ +++   A+ G G+ +L  F EMI  G +P+ V+F+ +L ACSH  LV+
Sbjct: 501 EEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVE 560

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+++ + M   Y + P  +HYT +VD L R+GR DEA KL   +  +PD   ++W ++L
Sbjct: 561 EGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPD--EIVWTSVL 618

Query: 409 SASRLHGRVDIAVEASNQLIESNQQV---ANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           ++ R+H    +A +A+ QL   N +V   A  YVT+SN +A AG+W++V  ++  M+  G
Sbjct: 619 NSCRIHKNYALARKAAGQLF--NMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRG 676

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K P  SWVEI+ + + F A +    +  E+L  +  L  +M++ GY          +V
Sbjct: 677 VRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEKEGY-DPDISCAHQNV 735

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           + E++ + +  HSERLA+AF LI+ P+G  I +MKNLR C DCH   K+IS IV R+  V
Sbjct: 736 DKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITV 795

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHHFR+GSCSCGD+W
Sbjct: 796 RDSNRFHHFRDGSCSCGDYW 815



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 201/404 (49%), Gaps = 9/404 (2%)

Query: 33  FIQQLQECKHL---ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +I  L  C  L     L   H++I+K G   N    N L++ Y +      AR+LF EM 
Sbjct: 143 YITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMC 202

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + VS+  ++ GY N G  + A+ LF +M      P++FTFA VI A   L D   G+Q
Sbjct: 203 GWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQ 262

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  +    F  N+ V ++ +D Y K + V+  R++F+ M   + VS+  II A+A   +
Sbjct: 263 IHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGK 322

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E++++F+E  + + DR N     ++++  AS   L  G+  H  VV S  + +  V++
Sbjct: 323 VKESIDLFQELQFTTFDRKN-FPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSN 381

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +LVDMYAKCG    +D++F R+S+ S V +T+MI    + GL    L LF EM    +  
Sbjct: 382 SLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSA 441

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  VL A ++   +  G Q L S   + G + +      ++DM      + +A K 
Sbjct: 442 DQATFACVLKASANLASILLGKQ-LHSCVIRSGFM-NVYSGCALLDMYANCASIKDAIKT 499

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
            + +    +   + W  LLSA   +G     +++  ++I S  Q
Sbjct: 500 FEEMS---ERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQ 540



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 160/329 (48%), Gaps = 2/329 (0%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N+F+++ +I+ YV+     VAR++FD+  E  VV++T+++  Y    +   A  LF +M 
Sbjct: 73  NSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMH 132

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            +   P+  T+ T++  C+ L       Q H  I   G   N  VC++L+D Y K   +D
Sbjct: 133 RSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLD 192

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            ARR+F  M   + VS+  +I  +A N    EA+E+F E       +P+    A+VI+A 
Sbjct: 193 SARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGF-KPSDFTFAAVISAS 251

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             L     G+  HG VV++    N  V +A +D Y+K   VN   K+FN +     V+Y 
Sbjct: 252 VGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYN 311

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            +I   A  G  + S+DLF E+        +  F  +L   + S  +  G Q L +    
Sbjct: 312 VIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQ-LHAQVVV 370

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
               PD +    +VDM  + G+ +EA ++
Sbjct: 371 SMADPDFRVSNSLVDMYAKCGKFEEADRI 399


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 335/576 (58%), Gaps = 11/576 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  L  L    SV      +G+  + F  + L++ Y R    + A ++FD M 
Sbjct: 110 FTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMP 169

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + V++++++AG++  G+P  AL ++ +M  + V  +E     VI+AC    +   G  
Sbjct: 170 RKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGAS 229

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  +     + ++V  +SLV MY K   +D A +VF +M  RN V+W+++I   AQN +
Sbjct: 230 VHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGR 289

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EAL++FRE       +P    L S + ACAS+G L  GK  HG ++R   E+  ++ +
Sbjct: 290 AVEALDLFRELQADGL-QPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCILGT 347

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A++DMY+KCGS+  + K+FN++S+  +V + ++I     +G G  +L LF E+   GIKP
Sbjct: 348 AVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKP 407

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF  +L A SHSGLV+EG    D M +++GI P  KHY C+VD+L R+G ++EA  +
Sbjct: 408 DHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDM 467

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+Q +P     +W  LLS    + ++++    + +++E   +       +SN YA A 
Sbjct: 468 LASMQTEPTIA--IWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAK 525

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
           +W+ V  +R  MK +G  K PG S +E++   +AF   +    +  E+L ++ +L  +M+
Sbjct: 526 KWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMR 585

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GYV  +T  V+ D+++   ++++  HSERLA+AFGL++   G  + I+KNLR+C DCH
Sbjct: 586 KLGYV-PRTEFVYHDLDE---DQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCH 641

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           D  K IS IV+R+ VVRD  RFHHF++G+CSCGD+W
Sbjct: 642 DAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           W  ++ AH++      AL +FR     S  RPN       + ACA LG L + +      
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRAL--PSSARPNSTTFTLTLTACARLGDLDAAESVRVRA 133

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
             +G   +  V SAL+ +Y++CG++  + +VF+ +     V +++M+ G    G    +L
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            +++ M   G+  ++V  VGV+ AC  +G    G      + R + +  D    T +V M
Sbjct: 194 AMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLR-HCMRMDVVTTTSLVSM 252

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
             + G LD A ++ + +   P    + W  L+S    +GR   AVEA
Sbjct: 253 YAKNGHLDVACQVFRMM---PYRNDVTWSALISGFAQNGR---AVEA 293


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 327/577 (56%), Gaps = 40/577 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  T   ++  Y ++K  + AR+ FD M E +VVS+ ++++GY   G  +  L LF +M+
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P+E T+ TVI ACS   D      +   +     Q N  V ++L+DMY KC  + 
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIG 312

Query: 181 GARRVFDLMGC--------------------------------RNVVSWTSIIVAHAQNA 208
            ARR+FD +G                                 RNVV+W S+I  +AQN 
Sbjct: 313 AARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNG 372

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           Q   A+E+F+E     +  P++  + SVI+AC  LG L  G      +  +  + +    
Sbjct: 373 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 432

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +A++ MY++CGS+  + +VF  ++   VV+Y ++I G A +G G  +++L + M   GI+
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VTF+GVL ACSH+GL++EG +  +S+       P   HY C+VD+LGR G L++A +
Sbjct: 493 PDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKR 547

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             + + ++P  G  ++G+LL+ASR+H +V++   A+N+L E     +  ++ LSN YA A
Sbjct: 548 TMERMPMEPHAG--VYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASA 605

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W++V  +R  MK+ G+ K  G SWVE   + + F   +   ER  ++  LL EL +KM
Sbjct: 606 GRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKM 665

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           +E GY+  K+  V  DVE+E +EEIVG HSE+LA+ + L+    G  IR++KNLR+C DC
Sbjct: 666 REAGYIADKS-CVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDC 724

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K+IS +  R  +VRD NRFH F +G CSC D+W
Sbjct: 725 HTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 181/431 (41%), Gaps = 82/431 (19%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLK-KTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           L  +H++I+ +    + + +  LIN   RL+        LF+  L PNV  +TS++  Y 
Sbjct: 17  LRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYS 76

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
           ++      +L+F+ M G  V P+ F +  +IK+         G   H H+   G   +  
Sbjct: 77  HLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN-----GGIGFHAHVLKLGHGSDAF 131

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           V ++++DMY +   +  AR+VFD +    R V  W +++  + +     +A  +F     
Sbjct: 132 VRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP- 190

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                                                  E N +  +A+V  YAK   + 
Sbjct: 191 ---------------------------------------ERNVITWTAMVTGYAKVKDLE 211

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + + F+ +   SVV++ +M+ G A+ GL    L LF+EM++ GI+P++ T+V V+ ACS
Sbjct: 212 AARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACS 271

Query: 343 HSG-----------LVDEGIQ-------HLDSMYRKYGIIPDAKH-------------YT 371
             G           L  + IQ        L  MY K G I  A+              + 
Sbjct: 272 SRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWN 331

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            ++    R G LD A +L  ++   P    + W ++++    +G+  +A+E   ++I + 
Sbjct: 332 AMISAYTRVGNLDSARELFNTM---PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAK 388

Query: 432 QQVANAYVTLS 442
           +   +    +S
Sbjct: 389 KLTPDEVTMVS 399



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 13/296 (4%)

Query: 13  LAAS---SLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI 69
           LAAS   +L ++  + +C  +   +    +C  + +   +  E+   G   N+ T N +I
Sbjct: 278 LAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDEL---GAYRNSVTWNAMI 334

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNE 128
           + Y R+     AR+LF+ M   NVV++ S++AGY   GQ  +A+ LF++M+    + P+E
Sbjct: 335 SAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 394

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            T  +VI AC  L  L  G  +   +     + ++   ++++ MY +C  ++ A+RVF  
Sbjct: 395 VTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQE 454

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  R+VVS+ ++I   A +  G EA+ +      +    P++     V+ AC+  G L  
Sbjct: 455 MATRDVVSYNTLISGFAAHGHGVEAINLMSTMK-EGGIEPDRVTFIGVLTACSHAGLLEE 513

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
           G+     +     +      + +VD+  + G +  + +   R+   P    Y S++
Sbjct: 514 GRKVFESIKDPAIDH----YACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLL 565


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/589 (34%), Positives = 324/589 (55%), Gaps = 23/589 (3%)

Query: 19  TRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78
           T  ++ SS    A  +  LQ C ++  L  +H ++LK+G + +    + L+         
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 79  QVA--RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
            +A  R +FD +  PN   + +++ GY N  +P+ ALLL+  ML + V  N +TF  ++K
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           ACS ++ L   +QIH HI   GF   +   +SL+++Y K  D+  AR +FD +  R+   
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-- 184

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
                          EAL +F           N   L S + ACA LG L  GK  H  +
Sbjct: 185 ---------------EALNLFHRMQTAGIKLDNV-ALVSTLQACADLGVLDQGKWIHAYI 228

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            +   E + ++   L+DMYAKCG +  + +VF ++    V  +T+MI G A +G GR +L
Sbjct: 229 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 288

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           + F +M + G++PN +TF G+L ACSH+GLV E     +SM R +G  P  +HY C+VD+
Sbjct: 289 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDL 348

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR G L EA +L +++ V P+    +WG LL+A  +HG +++  +    LI+ +     
Sbjct: 349 LGRAGLLKEAEELIENMPVKPNAA--IWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 406

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            Y+ L++ +A AGEW     +R +MK  G+ K PGCS + +    + F AG+    +  E
Sbjct: 407 RYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 466

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +  +L ++  +++E GY      L+    + E    I   HSE+LA+ FGLIS   G+TI
Sbjct: 467 IDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAI-HHHSEKLAVTFGLISTKPGMTI 525

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI+KNLR+C DCH V KLIS +  R+ ++RD  RFH F++G+C+CGD+W
Sbjct: 526 RIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 337/592 (56%), Gaps = 22/592 (3%)

Query: 12  TLAASSLTRQNKRS-SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
           T   +S+T  N R  + H     I Q  E K L     +H+++L++G   + F+ + LI 
Sbjct: 19  TPNPNSITLNNDRYFANHPTLSLIDQCSETKQL---KQIHAQMLRTGLFFDPFSASRLIT 75

Query: 71  CYV--RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPN 127
                       A+Q+FD++  PN+ ++ +L+  Y +   P  +LL+F +ML     +P+
Sbjct: 76  AAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPD 135

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           +FTF  +IKA S L +L TGK  H  +       ++ + +SL+  Y KC ++    RVF 
Sbjct: 136 KFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFV 195

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
               R+VVSW S+I A  Q     EALE+F+E   Q+  +PN   +  V++ACA      
Sbjct: 196 NXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKSDFE 254

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G+  H  + R+    +  +++A++DMY KCGSV  + ++F+++    +V++T+M+VG A
Sbjct: 255 FGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 308 K------------YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           K            +G G+ ++ LF++M    +KPN VTF  +L ACSH GLV+EG    +
Sbjct: 315 KIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN 374

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            M   YG++P  KHY C+VD+LGR G L+EA +L + + + P     +WG LL A  +H 
Sbjct: 375 QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAAS--VWGALLGACTIHE 432

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            V +A +A +QLIE       AYV LSN YA AG+W+ V  LR  M+  G+ KEPGCS +
Sbjct: 433 NVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 492

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           E+    + F  G+       ++ + L E+  +++  GYV  K+ L+ +  E++ +E+ + 
Sbjct: 493 EVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALF 552

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           LHSE+LA+AFGLIS  +   IRI+KNLR+C DCH V KL+S + +R+ ++RD
Sbjct: 553 LHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 604


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/623 (34%), Positives = 330/623 (52%), Gaps = 56/623 (8%)

Query: 35  QQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKTQVARQLFDEMLEPNV 93
           +    CK    L  +H+  +K+G + +  T   +I  C    +    AR +F +M EPN 
Sbjct: 24  KPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNC 83

Query: 94  VSYTSLMAGYINMGQPQI---ALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQ 149
             + +++          +   AL+LF  ML +  V PN FTF +V+KAC+  + L  GKQ
Sbjct: 84  FCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQ 143

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKC--------------------------------- 176
           IH  I  FGF  +  V S+LV MY  C                                 
Sbjct: 144 IHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGN 203

Query: 177 --------------NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                          D+  A+ +FD M  R+VVSW  +I  +AQN    EA+ +F+E   
Sbjct: 204 VVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQS 263

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            + D PN   L SV+ A A +G L  GK  H    ++  E +DV+ SALVDMY+KCGS++
Sbjct: 264 SNID-PNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSID 322

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + +VF  +   + +T++++I   A +G    ++  F+ M   G+ PNDV ++G+L ACS
Sbjct: 323 KALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACS 382

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLV+EG      M +  G+ P  +HY C+VD+LGR G L+EA +L +++ ++PD   +
Sbjct: 383 HAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD--V 440

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A ++H  + +    +  L+E     + +YV LSN YA  G WE V  +R +MK
Sbjct: 441 IWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMK 500

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
              I K+PGCSW+EI    + F   +    +  E+ ++L E+  K++  GY    T  VF
Sbjct: 501 GMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGY-RPNTLEVF 559

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
           ++ +++ R   +  HSE++A+AFGLIS      ++I+KNLR+C DCH   KLIS I +R 
Sbjct: 560 LNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQ 619

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD  RFH F +GSCSC D+W
Sbjct: 620 IIVRDRKRFHQFEHGSCSCMDYW 642


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 324/570 (56%), Gaps = 18/570 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF---DEMLEP---NVVSYTSLMAG 102
           +HS ILK G   N   L               A  +    D+   P   +   + +L+  
Sbjct: 141 IHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRA 200

Query: 103 YINMGQPQI-ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           +      +  AL  +  M  + V PN+FTF  V+KAC+ +  L  G  +H  +  FGF+ 
Sbjct: 201 FAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEE 260

Query: 162 NLVVCSSLVDMYGKCNDVDG------ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
           +  V ++LV MY  C   DG      A++VFD    ++ V+W+++I  +A+      A+ 
Sbjct: 261 DPHVRNTLVHMYCCCCQ-DGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVT 319

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +FRE        P++  + SV++ACA LG L  GK     + R     +  + +AL+DM+
Sbjct: 320 LFREMQVTGVC-PDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMF 378

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           AKCG V+ + KVF  +   ++V++TSMIVG A +G G  ++ +F+EM+ +G+ P+DV F+
Sbjct: 379 AKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFI 438

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           GVL ACSHSGLVD+G  + ++M   + I+P  +HY C+VDML R GR++EA +  +++ V
Sbjct: 439 GVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPV 498

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           +P+   ++W ++++A    G + +    + +LI       + YV LSN YA    WE   
Sbjct: 499 EPNQ--VIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKT 556

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R  M   G+ K PG + +E+ ++ Y F AG+   ++  E+  ++ E+ R++K  GYV 
Sbjct: 557 KVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYV- 615

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
             T  V +D+++E +E+ +  HSE+LA+AF L+S P G  IRI+KNLR+C DCH   K I
Sbjct: 616 PTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFI 675

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S +  R+ VVRD NRFHHF+NG CSCGDFW
Sbjct: 676 SKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/584 (33%), Positives = 337/584 (57%), Gaps = 6/584 (1%)

Query: 23  KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR 82
           +R    T    +    + + L +   VH+  L++G          +++ Y +    + AR
Sbjct: 115 ERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAAR 174

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
            +FD M   N VS+ +++ GY + G    A+ LF +M+   V   + +    ++AC  L 
Sbjct: 175 AVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELG 234

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV-VSWTSII 201
            L   +++H  +   G   N+ V ++L+  Y KC   D A +VF+ +G +   +SW ++I
Sbjct: 235 YLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMI 294

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
           +   QN    +A  +F     ++  RP+   L SVI A A +   +  +  HG  +R   
Sbjct: 295 LGFTQNECPEDAERLFARMQLENV-RPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQL 353

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           + +  V +AL+DMY+KCG V+ + ++F+   +  V+T+ +MI G   +G G+ +++LF E
Sbjct: 354 DQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEE 413

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M   G  PN+ TF+ VL ACSH+GLVDEG ++  SM + YG+ P  +HY  +VD+LGR G
Sbjct: 414 MKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAG 473

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +LDEA+   K++ ++P  G  ++G +L A +LH  V++A E++  + E   +    +V L
Sbjct: 474 KLDEAWSFIKNMPIEP--GISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLL 531

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           +N YA A  W++V  +R+ M++ G+ K PG S ++++++ + FY+G+   +   ++ + L
Sbjct: 532 ANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARL 591

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
            +L  ++K+ GYV     +   DVED+ + +++  HSE+LA+A+GLI    G TI+I KN
Sbjct: 592 AKLIEEIKDMGYVPDTDSI--HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKN 649

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH+  KLIS +  R+ ++RD+ RFHHF++G CSCGD+W
Sbjct: 650 LRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 188/398 (47%), Gaps = 15/398 (3%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C     LA+   VH+++   G  S +     L N Y + ++   AR++FD M 
Sbjct: 19  FTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMP 78

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL--VWPNEFTFATVIKACSMLADLITG 147
             + V++ +++AGY   G P  A+    +M G      P+  T  +V+ AC+    L   
Sbjct: 79  SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHAC 138

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +++H      G    + V ++++D Y KC  V+ AR VFD M  RN VSW ++I  +A N
Sbjct: 139 REVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
               EA+ +F     +  D  +  +LA+ + AC  LG L   +  H ++VR G   N  V
Sbjct: 199 GNATEAMALFWRMVQEGVDVTDASVLAA-LQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSV-VTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
            +AL+  YAKC   + + +VFN + N    +++ +MI+G  +      +  LF  M    
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQH--LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
           ++P+  T V V+ A +    + + +Q   +     ++ +  D    T ++DM  + GR+ 
Sbjct: 318 VRPDSFTLVSVIPAVAD---ISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVS 374

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            A +L  S +   D   + W  ++     HG    AVE
Sbjct: 375 IARRLFDSAR---DRHVITWNAMIHGYGSHGFGQAAVE 409



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 134/261 (51%), Gaps = 2/261 (0%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF  ++K C+  ADL TG+ +H  +E  G     +  ++L +MY KC     ARRVFD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALE-MFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
             R+ V+W +++  +A+N     A+E + R    +  +RP+   L SV+ ACA    L +
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
            +  H   +R+G +    V++A++D Y KCG+V  +  VF+ +   + V++ +MI G A 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            G    ++ LF  M+  G+   D + +  L AC   G +DE ++ +  +  + G+  +  
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE-VRRVHELLVRVGLSSNVS 256

Query: 369 HYTCVVDMLGRTGRLDEAYKL 389
               ++    +  R D A ++
Sbjct: 257 VTNALITTYAKCKRADLAAQV 277



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 1/163 (0%)

Query: 21  QNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80
           +N R    T    I  + +    +    +H   ++     + + L  LI+ Y +  +  +
Sbjct: 316 ENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSI 375

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR+LFD   + +V+++ +++ GY + G  Q A+ LF++M G    PNE TF +V+ ACS 
Sbjct: 376 ARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSH 435

Query: 141 LADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGA 182
              +  G++    ++  +G +  +    ++VD+ G+   +D A
Sbjct: 436 AGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEA 478



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P      +++  CA+   L +G+  H  +   G     + ++AL +MY KC     + +V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVGVLHACSHS 344
           F+R+ +   V + +++ G A+ GL   +++    M     G +P+ VT V VL AC+ +
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/550 (34%), Positives = 315/550 (57%), Gaps = 8/550 (1%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEM----LEPNVVSYTSLMAGYINMGQPQIALLL 115
           ++  + N ++  Y      + A +L  EM    +EP+++++  L+ G+   G  + AL  
Sbjct: 427 TDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEF 486

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           FQ+M    + PN  T +  + AC  + +L  GK+IH ++     + +  V S+L+ MY  
Sbjct: 487 FQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSG 546

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C+ ++ A  VF  +  R+VV W SII A AQ+ +   AL++ RE N  S    N   + S
Sbjct: 547 CDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL-SNVEVNTVTMVS 605

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
            + AC+ L  L  GK  H  ++R G +  + + ++L+DMY +CGS+  S ++F+ +    
Sbjct: 606 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           +V++  MI     +G G  +++LF +  + G+KPN +TF  +L ACSHSGL++EG ++  
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            M  +Y + P  + Y C+VD+L R G+ +E  +  + +  +P+    +WG+LL A R+H 
Sbjct: 726 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAA--VWGSLLGACRIHC 783

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
             D+A  A+  L E   Q +  YV ++N Y+ AG WE+   +R  MK  G+ K PGCSW+
Sbjct: 784 NPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWI 843

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           E++ + ++F  G+       ++ + +  L   +KE GYV   T  V  DV+++ +E  + 
Sbjct: 844 EVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYV-PDTNFVLQDVDEDEKEFSLC 902

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595
            HSE++ALAFGLIS   G  +RI+KNLR+C DCH   K IS + +RD ++RD  RFHHF 
Sbjct: 903 GHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFV 962

Query: 596 NGSCSCGDFW 605
           +G CSCGD+W
Sbjct: 963 DGVCSCGDYW 972



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 211/465 (45%), Gaps = 79/465 (16%)

Query: 4   SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLA---SVHSEILKSGFLS 60
           S+ RN +   AA  L+  +  +       +   LQ+C+ L +L     VH++++ +G   
Sbjct: 63  SVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDV 122

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
             F  + L+  Y +    + AR++FD+M E NV S+T++M  Y  +G  +  + LF  M+
Sbjct: 123 CEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMV 182

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V P+ F F  V KACS L +   GK ++ ++ + GF+ N  V  S++DM+ KC  +D
Sbjct: 183 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 181 GARRVFDLMGCRNV-----------------------------------VSWTSIIVAHA 205
            ARR F+ +  ++V                                   V+W +II  +A
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYA 302

Query: 206 QNAQGHEALEMFRE-------------------------FNYQSRD----------RPNQ 230
           Q+ Q  EA + F E                         +++++            +PN 
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVR-SGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
             +AS ++AC +L  L  G+  HG  ++    + + +V ++LVD YAKC SV  + + F 
Sbjct: 363 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 422

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            I    +V++ +M+ G A  G    +++L +EM  +GI+P+ +T+ G++   +  G    
Sbjct: 423 MIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKA 482

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            ++    M+   G+ P+    +  +   G+   L    KL K I 
Sbjct: 483 ALEFFQRMH-SMGMDPNTTTISGALAACGQVRNL----KLGKEIH 522



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 136/263 (51%), Gaps = 6/263 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +L++    +T   + LI+ Y      +VA  +F E+   +VV + S+++     G+
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L ++M  + V  N  T  + + ACS LA L  GK+IH  I   G      + +S
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMYG+C  +  +RR+FDLM  R++VSW  +I  +  +  G +A+ +F++F      +P
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL-KP 699

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA--SALVDMYAKCGSVNYSDK 286
           N     ++++AC+  G L+     +  ++++    +  V   + +VD+ ++ G  N + +
Sbjct: 700 NHITFTNLLSACSHSG-LIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 287 VFNRIS-NPSVVTYTSMIVGAAK 308
              ++   P+   + S++ GA +
Sbjct: 759 FIEKMPFEPNAAVWGSLL-GACR 780


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 334/590 (56%), Gaps = 26/590 (4%)

Query: 33  FIQQLQECKHLISLASVHSEILKSG--------FLSNTFTLNHLINCYVRLKKTQV---- 80
            +  L  C  L +LA +H+  +K+G        F++   TL     C  +  +       
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTL-----CTEQGAEAPAHLAY 85

Query: 81  ARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALL----LFQKMLGNLVWPNEFTFATVI 135
           ARQ+FD +  P +VV Y +L+ GY   G           +F +M+   V P+ +TF +++
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           KAC+       G+Q H      G   +  V  +L++MY +C DV  AR +FD M    VV
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           S+ ++I A  +++   EAL +FRE   +   +P    L SV++ACA LG L  G+  H  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGL-KPTSVTLISVLSACALLGALELGRWIHDY 264

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           + +   +    V +AL+DMYAKCGS+  +  VF  + +     ++ M+V  A +G GR +
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREA 324

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           + +F EM  +G+KP+DVTF+GVL+ACSHSG+V EG+Q+ DSM R+YGI+   KHY CV D
Sbjct: 325 ISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTD 383

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +L R+G+L+ AYK    + + P    +LW TLLSA   HG VD+      +++E +    
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTA--ILWRTLLSACAGHGDVDMGKRVFERILELDDSHG 441

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV  SN  A  G WE ++ +R  M   G+ K PGCS +EI +  + F+AG+       
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E   ++ E+  ++K  GYV   + +  V++ +E +   +  HSE+LA++FGL++   G T
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +RI+KNLR+C DCH + KL+S +  R  ++RD+NRFHHF +G CSCGD+W
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/623 (34%), Positives = 330/623 (52%), Gaps = 56/623 (8%)

Query: 35  QQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKTQVARQLFDEMLEPNV 93
           +    CK    L  +H+  +K+G + +  T   +I  C    +    AR +F +M EPN 
Sbjct: 24  KPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNC 83

Query: 94  VSYTSLMAGYINMGQPQI---ALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQ 149
             + +++          +   AL+LF  ML +  V PN FTF +V+KAC+  + L  GKQ
Sbjct: 84  FCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQ 143

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKC--------------------------------- 176
           IH  I  FGF  +  V S+LV MY  C                                 
Sbjct: 144 IHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGN 203

Query: 177 --------------NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                          D+  A+ +FD M  R+VVSW  +I  +AQN    EA+ +F+E   
Sbjct: 204 VVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQS 263

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            + D PN   L SV+ A A +G L  GK  H    ++  E +DV+ SALVDMY+KCGS++
Sbjct: 264 SNID-PNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSID 322

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + +VF  +   + +T++++I   A +G    ++  F+ M   G+ PNDV ++G+L ACS
Sbjct: 323 EALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACS 382

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLV+EG      M +  G+ P  +HY C+VD+LGR G L+EA +L +++ ++PD   +
Sbjct: 383 HAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD--V 440

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A ++H  + +    +  L+E     + +YV LSN YA  G WE V  +R +MK
Sbjct: 441 IWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMK 500

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
              I K+PGCSW+EI    + F   +    +  E+ ++L E+  K++  GY    T  VF
Sbjct: 501 GMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGY-RPNTLEVF 559

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
           ++ +++ R   +  HSE++A+AFGLIS      ++I+KNLR+C DCH   KLIS I +R 
Sbjct: 560 LNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQ 619

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD  RFH F +GSCSC D+W
Sbjct: 620 IIVRDRKRFHQFEHGSCSCMDYW 642


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 316/559 (56%), Gaps = 5/559 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H+  +++ F  N      L++ Y +      AR++F+ + + N V +++++ GY+   
Sbjct: 231 AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290

Query: 108 QPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
               AL L+  ML    + P   T AT+++AC+ L DL  GK++H H+   G   +  V 
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+ MY KC  +D A    D M  ++ VS+++II    QN    +AL +FR+    S  
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQ-SSGI 409

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P    + +++ AC+ L  L  G   HG  V  G   +  + +A++DMY+KCG +  S +
Sbjct: 410 APYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISRE 469

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F+R+ N  ++++ +MI+G   +GL   +L LF E+ + G+KP+DVT + VL ACSHSGL
Sbjct: 470 IFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGL 529

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V EG     SM + + I P   HY C+VD+L R G LDEAY   + +   P+    +WG 
Sbjct: 530 VTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPN--VRIWGA 587

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL+A R H  +++  + S ++     +    +V +SN Y+  G W++   +RS  +  G 
Sbjct: 588 LLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGY 647

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PGCSWVEI    + F  G+    + + +   L+EL  +MK+ GY    +  V  DVE
Sbjct: 648 KKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGY-RADSSFVLHDVE 706

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E+I+  HSE++A+AFG+++      I + KNLR+C DCH   K I+ + ER+  VR
Sbjct: 707 EEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVR 766

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHF++G C+C DFW
Sbjct: 767 DASRFHHFKDGICNCQDFW 785



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 13/322 (4%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           ++   + Q+AR +FD++ +P+VV +  ++  Y   G  Q ++ L+  ML   V P  FTF
Sbjct: 51  HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
             ++KACS L  L  G+ IHTH    G   +L V ++L+ MY KC  +  A+ +F+ +  
Sbjct: 111 PFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170

Query: 192 --RNVVSWTSIIVA---HAQNAQG-HEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             R++V+W ++I A   HA +AQ  H   +M      Q+   PN   L S++        
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQM-----QQAGVTPNSSTLVSILPTIGQANA 225

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  GK  H   +R+    N V+ +AL+DMYAKC  + Y+ K+FN ++  + V +++MI G
Sbjct: 226 LHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGG 285

Query: 306 AAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
              +     +L L+++M+   G+ P   T   +L AC+    +  G + L     K G+ 
Sbjct: 286 YVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG-KKLHCHMIKSGMD 344

Query: 365 PDAKHYTCVVDMLGRTGRLDEA 386
            D      ++ M  + G +D A
Sbjct: 345 LDTTVGNSLISMYAKCGIMDNA 366



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +D  A+ L   +     +  +  VF++I  PSVV +  MI   A  G  + S+ L+  M+
Sbjct: 40  SDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHML 99

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G+ P + TF  +L ACS    +  G + + +     G+  D    T ++ M  + G L
Sbjct: 100 QLGVTPTNFTFPFLLKACSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHL 158

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
            +A  L  SI    D   + W  +++A   H     A+ A  Q I S  Q+  A VT
Sbjct: 159 YQAQTLFNSIS-HQDRDIVAWNAMIAAFSFH-----ALHA--QTIHSVAQMQQAGVT 207


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 329/563 (58%), Gaps = 17/563 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  LK G +++ F      + Y +      A++LFDEM   NV  + + ++  +  G+
Sbjct: 80  IHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGR 139

Query: 109 PQIAL---LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           P  A+   + F+++ G    P+  TF   + AC+    L  G+Q+H  +   GF+ ++ V
Sbjct: 140 PGKAIDKFIEFRRVGGE---PDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSV 196

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNY 222
            + ++D+YGKC +V+ A  VF+ MG RN VSW +++ A  QN +  +A  +F   R+   
Sbjct: 197 ANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGI 256

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +  D    +M++SVI+A A +  L  G+  H + V++  E +  V SALVDMY KCGS+ 
Sbjct: 257 ELTD----YMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
             ++VF+ +   ++V++ +MI G A  G    ++ LF EM S  +  N VT + VL ACS
Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACS 371

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
             G V  G +  +SM  +Y I P A+HY C+ DMLGR G ++ AY+  + + + P     
Sbjct: 372 RGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTIS-- 429

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LL+A R++G  ++   A++ L + + + +  +V LSN +A AG W+    +R EMK
Sbjct: 430 VWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMK 489

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             GI K  GCSWV  +++ + F A +   ER SE+ ++L +L  +M+  GY+   T    
Sbjct: 490 DVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMP-DTNYAL 548

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+E+E +   VG HSE++ALAFGLI++P G+ IRI KNLR+C DCH  FK IS IV R+
Sbjct: 549 YDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGRE 608

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD NRFH FR+  CSC DFW
Sbjct: 609 IIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 177/371 (47%), Gaps = 10/371 (2%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +L     A+ L        VV++T+L++G +  G    ALL F KM    + PN+FTF
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
               KA + L     GKQIH      G   +  V  S  DMY K      A+R+FD M  
Sbjct: 62  PCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPP 121

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           RNV  W + I     + +  +A++ F EF  +    P+     + +NACA    L  G+ 
Sbjct: 122 RNVAVWNAYISNAVLDGRPGKAIDKFIEFR-RVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            HG+V+RSG E +  VA+ ++D+Y KC  V  ++ VFN +   + V++ +M+    +   
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SGLVDEGIQHLDSMYRKYGIIPDAKHY 370
              +  +F      GI+  D     V+ A +  SGL  E  + + ++  K  +  D    
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGL--EFGRSVHALAVKACVEGDIFVG 298

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           + +VDM G+ G +++  ++   +   P+   + W  ++S     G VD+A+    ++   
Sbjct: 299 SALVDMYGKCGSIEDCEQVFHEM---PERNLVSWNAMISGYAHQGDVDMAMTLFEEM--Q 353

Query: 431 NQQVANAYVTL 441
           ++ VAN YVTL
Sbjct: 354 SEAVAN-YVTL 363



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 2/215 (0%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K +  + A+ +  L   R VV+WT++I    QN     AL  F +   ++  +PN  
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENI-KPNDF 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
                  A  +L    +GK  H + ++ G   +  V  +  DMY+K G    + ++F+ +
Sbjct: 60  TFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
              +V  + + I  A   G    ++D F E    G +P+ +TF   L+AC+ +  +D G 
Sbjct: 120 PPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGR 179

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           Q L  +  + G   D      ++D+ G+   ++ A
Sbjct: 180 Q-LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELA 213



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 8/197 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH+  +K+    + F  + L++ Y +    +   Q+F EM E N+VS+ ++++GY + G
Sbjct: 281 SVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQG 340

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVC 166
              +A+ LF++M    V  N  T   V+ ACS    +  G +I   + + +  +      
Sbjct: 341 DVDMAMTLFEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHY 399

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQNAQGHEALEMFREFNY 222
           + + DM G+   V+ A      M  R  +S W +++ A   + +   G  A +    F  
Sbjct: 400 ACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNL--FKL 457

Query: 223 QSRDRPNQHMLASVINA 239
             +D  N  +L+++  A
Sbjct: 458 DPKDSGNHVLLSNMFAA 474



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+K    N +  +        VVT+T++I G+ + G    +L  F++M    IKPND T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F     A +   L   G Q + ++  K G I D        DM  +TG   EA +L   +
Sbjct: 61  FPCAFKASTALCLPFAGKQ-IHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
              P     +W   +S + L GR   A++
Sbjct: 120 ---PPRNVAVWNAYISNAVLDGRPGKAID 145


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 332/576 (57%), Gaps = 10/576 (1%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C H   L+    +H+ I K  FL++ F    L++ Y +     +A  +FDEM 
Sbjct: 203 FSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMP 262

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             N+VS+ S++ G++       A+ +F+++L   + P++ + ++V+ AC+ L +L  GKQ
Sbjct: 263 HRNLVSWNSMIVGFVKNKLYGRAIGVFREVLS--LGPDQVSISSVLSACAGLVELDFGKQ 320

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  I   G    + V +SLVDMY KC   + A ++F   G R+VV+W  +I+   +   
Sbjct: 321 VHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRN 380

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +A   F+    +  + P++   +S+ +A AS+  L  G + H  V+++G   N  ++S
Sbjct: 381 FEQACTYFQAMIREGVE-PDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISS 439

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +LV MY KCGS+  + +VF      +VV +T+MI    ++G    ++ LF EM++ G+ P
Sbjct: 440 SLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVP 499

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
             +TFV VL ACSH+G +D+G ++ +SM   + I P  +HY C+VD+LGR GRL+EA + 
Sbjct: 500 EYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRF 559

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            +S+  +PD   L+WG LL A   H  V++  E + +L +        Y+ LSN Y   G
Sbjct: 560 IESMPFEPDS--LVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHG 617

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
             E    +R  M   G+ KE GCSW++++++T+ F A +    R  E+  +L++L+  +K
Sbjct: 618 MLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIK 677

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
            RGYV  +T      VE  + E+ +  HSE+LALAFGL+ +P G  +RI KNLR C DCH
Sbjct: 678 RRGYV-AETQFATNSVEG-SEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCH 735

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            V K  S+I +R+ +VRD+NRFH F NGSCSC D+W
Sbjct: 736 TVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 217/434 (50%), Gaps = 11/434 (2%)

Query: 10  IFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI 69
           +FT   S + + ++ SS     H +    + K L     +HS+++ +   ++   +N L+
Sbjct: 80  LFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLL 139

Query: 70  NCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
             Y +         LF+    P  NVV++T+L+       +P  AL  F +M    ++PN
Sbjct: 140 LLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPN 199

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
            FTF+ ++ AC+  A L  G+QIH  I    F  +  V ++L+DMY KC  +  A  VFD
Sbjct: 200 HFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFD 259

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  RN+VSW S+IV   +N     A+ +FRE        P+Q  ++SV++ACA L  L 
Sbjct: 260 EMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG---PDQVSISSVLSACAGLVELD 316

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK  HG +V+ G      V ++LVDMY KCG    + K+F    +  VVT+  MI+G  
Sbjct: 317 FGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCF 376

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           +      +   F  MI  G++P++ ++  + HA +    + +G   + S   K G + ++
Sbjct: 377 RCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTM-IHSHVLKTGHVKNS 435

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +  + +V M G+ G + +AY++ +  +   +   + W  +++    HG  + A++   ++
Sbjct: 436 RISSSLVTMYGKCGSMLDAYQVFRETK---EHNVVCWTAMITVFHQHGCANEAIKLFEEM 492

Query: 428 IESNQQVANAYVTL 441
           +  N+ V   Y+T 
Sbjct: 493 L--NEGVVPEYITF 504


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 330/573 (57%), Gaps = 42/573 (7%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPNVVSYTSLMAGYIN 105
           +HS  L+ GF S+      L++ Y +    Q    A ++F+ M + +V+S+T+L++GY+ 
Sbjct: 276 LHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQ 335

Query: 106 MG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
            G Q    ++LF +ML   + PN  T+++++KAC+ ++D  +G+Q+H H+          
Sbjct: 336 SGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHT 395

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++LV MY +   ++ ARRVF+ +  R+++S  +                       + 
Sbjct: 396 VGNALVSMYAESGCMEEARRVFNQLYERSMISCIT-----------------------EG 432

Query: 225 RDRPNQHML------------ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           RD P  H +            AS+I+A AS+G L  G+  H + +++G   +  V+++LV
Sbjct: 433 RDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLV 492

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            MY++CG +  + + FN + + +V+++TSMI G AK+G    +L LF++MI  G+KPNDV
Sbjct: 493 SMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDV 552

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           T++ VL ACSH GLV EG ++  SM R +G+IP  +HY C+VD+L R+G + EA +    
Sbjct: 553 TYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINE 612

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + +  D   L+W TLL A R H  +++   A+  +IE   +    YV LSN YA AG W+
Sbjct: 613 MPLKADA--LVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWD 670

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +RS M+   ++KE G SW+E+ + T+ F AG+    R  ++   L  L  ++K  G
Sbjct: 671 EVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMG 730

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T +V  D+ DE +E+ +  HSE++A+AFGLI+      IRI KNLR+C DCH   
Sbjct: 731 YV-PDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAI 789

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +S    R+ ++RD NRFH  ++G CSCG++W
Sbjct: 790 KYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 164/314 (52%), Gaps = 11/314 (3%)

Query: 48  SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYIN 105
           ++H  +L+   L  +    N L+  Y R      AR +FD M    ++VS+T++ +    
Sbjct: 69  ALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLAR 128

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC---SMLADLITGKQIHTHIETFGFQYN 162
            G  + +LLL  +ML + + PN +T   V  AC    +   +        H     +  +
Sbjct: 129 NGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGL-WGTD 187

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V S+L+DM  +  D+  AR+VFD +  + VV WT +I  + Q     EA+E+F +F  
Sbjct: 188 IAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDF-L 246

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG--- 279
           +    P+++ ++S+I+AC  LG +  G   H + +R G   +  V+  LVDMYAK     
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQ 306

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS-LDLFNEMISRGIKPNDVTFVGVL 338
           +++Y++KVF R+    V+++T++I G  + G+     + LF EM++  IKPN +T+  +L
Sbjct: 307 AMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 339 HACSHSGLVDEGIQ 352
            AC++    D G Q
Sbjct: 367 KACANISDHDSGRQ 380



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 182/366 (49%), Gaps = 21/366 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI+   R      AR++FD ++E  VV +T L++ Y+     + A+ +F   L +   P+
Sbjct: 194 LIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPD 253

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN---DVDGARR 184
            +T +++I AC+ L  +  G Q+H+     GF  +  V   LVDMY K N    +D A +
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANK 313

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNA-QGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           VF+ M   +V+SWT++I  + Q+  Q ++ + +F E   +S  +PN    +S++ ACA++
Sbjct: 314 VFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESI-KPNHITYSSILKACANI 372

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT-YTSM 302
               SG+  H  V++S       V +ALV MYA+ G +  + +VFN++   S+++  T  
Sbjct: 373 SDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEG 432

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
                 + +GR  +         GI  +  TF  ++ A +  G++ +G Q L +M  K G
Sbjct: 433 RDAPLDHRIGRMDM---------GISSS--TFASLISAAASVGMLTKG-QQLHAMTLKAG 480

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
              D      +V M  R G L++A    +S     D   + W +++S    HG  + A+ 
Sbjct: 481 FGSDRFVSNSLVSMYSRCGYLEDA---CRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 423 ASNQLI 428
             + +I
Sbjct: 538 LFHDMI 543



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 6/242 (2%)

Query: 143 DLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSI 200
           DL  G+ +H  +        + VV +SL+ +Y +C  V  AR VFD M G R++VSWT++
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV-RS 259
               A+N    E+L +  E   +S   PN + L +V +AC               +V + 
Sbjct: 123 ASCLARNGAERESLLLIGEM-LESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 260 GCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           G    D+ V SAL+DM A+ G +  + KVF+ +   +VV +T +I    +      ++++
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F + +  G +P+  T   ++ AC+  G V  G+Q L S+  + G   DA     +VDM  
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGFASDACVSCGLVDMYA 300

Query: 379 RT 380
           ++
Sbjct: 301 KS 302



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R +   S  T A  I        L     +H+  LK+GF S+ F  N L++ Y R   
Sbjct: 441 IGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGY 500

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + A + F+E+ + NV+S+TS+++G    G  + AL LF  M+   V PN+ T+  V+ A
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 138 CSMLADLITGKQ 149
           CS +  +  GK+
Sbjct: 561 CSHVGLVREGKE 572


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/576 (35%), Positives = 323/576 (56%), Gaps = 35/576 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N   +N L++ Y++      AR++FDE ++ N+V Y ++M+ Y+  G  +  L +  +ML
Sbjct: 274 NALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEML 333

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN--- 177
            +   P+  T  + + ACS L D+  GK  H ++   G +    VC+++++MY KC    
Sbjct: 334 KHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQE 393

Query: 178 ----------------------------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
                                       D++ A ++F  M   ++VSW ++I A  Q + 
Sbjct: 394 MACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESM 453

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+E+FR    +        M+  V +AC  LG L   K  HG + +    F+  + +
Sbjct: 454 FKEAIELFRVMQSEGITADKVTMVG-VASACGYLGALDLAKWIHGYIKKKDIHFDMHLGT 512

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDM+A+CG    + +VFN++    V  +T+ I   A  G G  +++LF+EM+ +GIKP
Sbjct: 513 ALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKP 572

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + V FV +L A SH GLV++G     SM   YGI P A HY C+VD+LGR G L EA  L
Sbjct: 573 DGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSL 632

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+Q++P+   ++WG+LL+A R+H  VDIA  A+ ++ E + +    +V LSN YA AG
Sbjct: 633 INSMQMEPN--DVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAG 690

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W++V  +R  +K  G HK PG S +EI  + + F  G+      + +  +L+E+  +++
Sbjct: 691 RWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLR 750

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GYV   T  V +DV ++ +E ++  HSE+LA+AF LIS  +G+ IR+ KNLR+C DCH
Sbjct: 751 DIGYVPDLTN-VLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCH 809

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              KL+S    R+ +VRD NRFH F+ G CSCGD+W
Sbjct: 810 SFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 206/413 (49%), Gaps = 38/413 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I+K GF  + F  N LI+ Y    +    R++FD+M E NVVS+TSL+ GY   G 
Sbjct: 161 VHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGC 220

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ LF +M+   + PN  T   VI AC+ L DL  G+Q+ T I     + N ++ ++
Sbjct: 221 YKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNA 280

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  +D AR++FD    +N+V + +I+  + +     E L +  E   +   RP
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEM-LKHGPRP 339

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++  + S ++AC+ L  +  GK  HG V+R+G E  D V +A+++MY KCG    + +VF
Sbjct: 340 DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF 399

Query: 289 NRISNPSVVTYTSMIVGAAKYG-------------------------------LGRFSLD 317
           +R+ N + V++ S+I G  + G                               + + +++
Sbjct: 400 DRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIE 459

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M S GI  + VT VGV  AC + G +D   + +    +K  I  D    T +VDM 
Sbjct: 460 LFRVMQSEGITADKVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHLGTALVDMF 518

Query: 378 GRTGRLDEAYKL-AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
            R G    A ++  K ++ D       W   + A  + G    A+E  +++++
Sbjct: 519 ARCGDPQSAMQVFNKMVKRDVSA----WTAAIGAMAMEGNGTGAIELFDEMLQ 567



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 207/412 (50%), Gaps = 42/412 (10%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN------CYVRLKKTQVARQLF--DEM 88
            ++CK +  L  +HS+I K+G   +  +L +LI+       +  L+  Q A +LF  D  
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
           +      ++SL+ G+   G    A+++F++++     P+ FTF  V+ AC+  A L  G 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q+H  I   GF+ ++ V +SL+  YG+C ++D  RRVFD M  RNVVSWTS+I  +A+  
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EA+ +F E   +   RPN   +  VI+ACA L  L  G+     +     E N ++ 
Sbjct: 220 CYKEAVSLFFEM-VEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV 278

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +ALVDMY KCG+++ + K+F+   + ++V Y +++    + GL R  L +  EM+  G +
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338

Query: 329 PNDVTFVGVLHACS-----------HSGLVDEGIQHLD-------SMYRKYG-------- 362
           P+ +T +  + ACS           H  ++  G++  D       +MY K G        
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398

Query: 363 ----IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
               +      +  ++    R G ++ A+K+  ++   PD   + W T++ A
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM---PDSDLVSWNTMIGA 447



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I K     +      L++ + R    Q A Q+F++M++ +V ++T+ +      G 
Sbjct: 495 IHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGN 554

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
              A+ LF +ML   + P+   F  ++ A S    +  G  I   + + +G     V   
Sbjct: 555 GTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYG 614

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---HAQNAQGHEALEMFREFNYQ 223
            +VD+ G+   +  A  + + M    N V W S++ A   H        A E   E +  
Sbjct: 615 CMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELD-- 672

Query: 224 SRDRPNQHMLASVINACASLGR 245
             +R   H+L S  N  AS GR
Sbjct: 673 -PERTGIHVLLS--NIYASAGR 691


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/667 (32%), Positives = 346/667 (51%), Gaps = 68/667 (10%)

Query: 4   SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQL--QECKHLISLASVHSEILKSGFLSN 61
           S T NL + LA+   + +NK +S  ++   +  L  +    L  L  VH+  L++G   +
Sbjct: 2   STTTNLPYHLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQD 61

Query: 62  TFTLNHLINCYV--RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            +    L+ CY          A ++F+ +  PNV  +  ++ G +   +P  A+  + KM
Sbjct: 62  HYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKM 121

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL---------------- 163
           +     PN+FT+ T+ KAC+       G Q+H H+   G   ++                
Sbjct: 122 MIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEV 181

Query: 164 --------------VVC-SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
                         V+C ++++D Y KC +V+ A+ +F  M  +NV SW  ++   A+  
Sbjct: 182 EGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCG 241

Query: 209 QGHEALEMFRE----------------------------FNYQSRD--RPNQHMLASVIN 238
              EA E+F E                            FN   R+  RP + +L+SV+ 
Sbjct: 242 MIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLA 301

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           ACA+LG L  G+  H  V  +   F+ V+ +ALVDMYAKCG ++ +  VF ++    V T
Sbjct: 302 ACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFT 361

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G   +G    +++LF +M  +  +PN +T +GVL AC+HSG+VDEG++  +SM 
Sbjct: 362 WNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSME 421

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
             YGI P  +HY CVVD+LGR G L EA ++  S+ ++P     +WG LL A R HG V+
Sbjct: 422 EVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAA--VWGALLGACRKHGDVE 479

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +       L+E   Q +  Y  LSN YA AG W++V ++R  MK  G+    G S ++  
Sbjct: 480 LGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFD 539

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
              + F  G+    +   +  +L+ + +++K  G+    T  V  D+E+E +E  +  HS
Sbjct: 540 GVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGF-SPNTSQVLFDIEEEEKEAELQYHS 598

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFGLI+   G TI ++KNLRMC DCH  FKLIS + +R+ +VRD  R+HHF+ G+
Sbjct: 599 EKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGT 658

Query: 599 CSCGDFW 605
           CSC DFW
Sbjct: 659 CSCKDFW 665


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 317/559 (56%), Gaps = 33/559 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   LKS +  + +    L++ Y +      AR  F+E+ + +V+ ++ ++A Y    
Sbjct: 261 SVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSD 320

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           Q + A+ +F +M   LV PN+FTFA+V++AC+ +  L  G QIH H+   G   ++ V +
Sbjct: 321 QSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSN 380

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +L+D+Y KC  ++ +  +F     RN V  W ++IV H Q   G +AL +F     + R 
Sbjct: 381 ALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNM-LEYRV 439

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +  +   +S + ACASL  L  G   H + V++  + + VV +AL+DMYAKCGS+  +  
Sbjct: 440 QATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARL 499

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ ++    V++ +MI G + +GL                            AC+++GL
Sbjct: 500 VFDLMNKQDEVSWNAMISGYSMHGL----------------------------ACANAGL 531

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +D+G  +  SM + +GI P  +HYTC+V +LGR G LD+A KL   I   P    ++W  
Sbjct: 532 LDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQP--SVMVWRA 589

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A  +H  +++   ++  ++E   Q    +V LSN YA A  W+NV S+R  MKR G+
Sbjct: 590 LLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGV 649

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW+E +   ++F  G+        +  +L  L  K K+ GY+     +V +DVE
Sbjct: 650 KKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIP-NYNVVLLDVE 708

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           DE +E ++ +HSERLAL+FG+I  P G  IRIMKNLR+C DCH   K IS +V+R+ VVR
Sbjct: 709 DEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVR 768

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D+NRFHHF+ G CSCGD+W
Sbjct: 769 DINRFHHFQEGLCSCGDYW 787



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 194/368 (52%), Gaps = 6/368 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I K G  SN F    LI+ Y    +  VAR++FD +L  ++VS+T ++  +     
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF +M      PN FTFA+V KAC  L     GK +H       ++ +L V  +
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D+Y K  D+D AR  F+ +  ++V+ W+ +I  +AQ+ Q  EA+EMF +   Q+   P
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMR-QALVLP 339

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ   ASV+ ACA++  L  G   H  V++ G   +  V++AL+D+YAKCG +  S  +F
Sbjct: 340 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLF 399

Query: 289 NRISNPSVVT-YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
               + + VT + ++IVG  + G G  +L LF  M+   ++  +VT+   L AC+    +
Sbjct: 400 AESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAAL 459

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           + G+Q + S+  K     D      ++DM  + G + +A +L   +    D   + W  +
Sbjct: 460 EPGLQ-IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQD--EVSWNAM 515

Query: 408 LSASRLHG 415
           +S   +HG
Sbjct: 516 ISGYSMHG 523



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 174/360 (48%), Gaps = 4/360 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H EILK G   + F  N L+N YV+      A +LFDEM E N +S+ +L+ GY    +
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF ++       N F F T++K    +     G  IH  I   G + N  V ++
Sbjct: 120 FLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTA 179

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+D Y  C  VD AR VFD +  +++VSWT ++   A+N    EAL++F +       +P
Sbjct: 180 LIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGF-KP 238

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    ASV  AC  L     GK  HG  ++S  E +  V  AL+D+Y K G ++ +   F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAF 298

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I    V+ ++ MI   A+    + ++++F +M    + PN  TF  VL AC+    ++
Sbjct: 299 EEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLN 358

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q +     K G+  D      ++D+  + GR++ +  L        D  P  W T++
Sbjct: 359 LGNQ-IHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTP--WNTVI 415



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 162/338 (47%), Gaps = 19/338 (5%)

Query: 115 LFQKMLGNLVWPNEF---TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           L Q+ +G+ V P+EF    +A  ++ C    +   GK +H  I   G   +L   + L++
Sbjct: 23  LTQEFVGH-VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLN 81

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K + +  A ++FD M  RN +S+ ++I  +A++ +  EA+E+F   + +  +  N  
Sbjct: 82  MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHEL-NPF 140

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           +  +++    S+     G   H  + + G E N  V +AL+D Y+ CG V+ + +VF+ I
Sbjct: 141 VFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGI 200

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
               +V++T M+   A+    + +L LF++M   G KPN+ TF  V  AC      D G 
Sbjct: 201 LYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGK 260

Query: 352 Q-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
             H  ++  +Y +  D      ++D+  ++G +D+A    + I   P    + W  +++ 
Sbjct: 261 SVHGCALKSRYEL--DLYVGVALLDLYTKSGDIDDARXAFEEI---PKKDVIPWSFMIAR 315

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
              + + D + EA     +  Q      + L N +  A
Sbjct: 316 ---YAQSDQSKEAVEMFFQMRQA-----LVLPNQFTFA 345


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 334/586 (56%), Gaps = 17/586 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINC-----YVRLKKTQVARQLFDE 87
            +  L +C  L +LA +H+  +KSG  ++   +  L+         +  +   ARQ+FD 
Sbjct: 34  LLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDR 93

Query: 88  MLEP-NVVSYTSLMAGYINM-----GQP--QIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +  P +VV Y +L+ GY         +P  + A  +F +ML   V P+ +TF +++KAC+
Sbjct: 94  IPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACA 153

Query: 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199
                  G+Q H      G   +  V  +L++MY +C D   AR +F  +    VVS+ +
Sbjct: 154 AARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNA 213

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +I A  ++++  EAL +FRE   +   +     L SV++ACA LG L  G+  H  V + 
Sbjct: 214 MITAAVRSSRPGEALVLFREMQAKGL-KLTSVTLISVLSACALLGALELGRWIHEYVRKV 272

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
             +    V +AL+DMY KCGS+  +  VF  + +     ++ MIV  A +  GR ++ LF
Sbjct: 273 QLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLF 332

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
            EM  +GIKP+DVTF+GVL+ACSHSGLV EG+Q+ DSM R++G++P  KHY CV D+L R
Sbjct: 333 EEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLAR 391

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
           +G+LD AY+    + + P    +LW TLLSA    G  D+  +   +++E +      YV
Sbjct: 392 SGQLDRAYEFIDELPIKPTA--ILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYV 449

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLS 499
             SN  A  G WE ++ +R  M   G+ K PGCS +E+ ++ + F+AG+    +  +   
Sbjct: 450 IFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARR 509

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
           ++  +  ++K  GYV   + +  V++ +E +   +  HSE+LA++FGL++   G T+R++
Sbjct: 510 MVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVV 569

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+C DCH + KL+S +  R  ++RD+NRFHHF +G CSCGD+W
Sbjct: 570 KNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 336/578 (58%), Gaps = 10/578 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C +L  L     +H+ I   G   +    N L+  Y R K    A ++F  + 
Sbjct: 223 FTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP 282

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +VVS+++++A +        A+  + KM    V PN +TFA+V+ AC+ + DL  G+ 
Sbjct: 283 RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRA 342

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  I   G++  LV  ++LVD+Y     +D AR +FD +  R+   WT +I  +++  Q
Sbjct: 343 VHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSK--Q 400

Query: 210 GHEA--LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
           GH    LE++RE    ++    + + + VI+ACASLG     + AH  +   G   + V+
Sbjct: 401 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 460

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           A++LV+MY++ G++  + +VF+++S+   + +T++I G AK+G    +L L+ EM   G 
Sbjct: 461 ATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGA 520

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +P+++TF+ VL+ACSH+GL ++G Q   S+   Y + P+  HY+C++D+L R GRL +A 
Sbjct: 521 EPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAE 580

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +L  ++ V+P+   + W +LL ASR+H  V  A  A+ Q+ + +     +YV LSN +A+
Sbjct: 581 ELINAMPVEPN--DVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAV 638

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            G    + S+R+ M   G+ K  G SW+E+ DQ + F  G+    R  E+ + L+ L  K
Sbjct: 639 TGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPK 698

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           +KE GYV  ++  V  DV ++ +E ++ LHSE+LA+AFGLI+   G T+RI   LR+C D
Sbjct: 699 IKEAGYV-PESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHD 757

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   K IS I  R+ +VRD +RFH FR+G CSCGD+W
Sbjct: 758 CHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 213/417 (51%), Gaps = 18/417 (4%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           MK+SL    +       L  +   S   +  H+   L++C+ L S+  +H  I  SG  S
Sbjct: 1   MKRSLAPAKVRRF---QLKEEKAGSRFDSSGHYRDALRQCQDLESVRQIHDRI--SGAAS 55

Query: 61  -NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            N F  N ++  Y +      AR  FD +   N  S+ S++  Y   G  + AL L+++M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCND 178
               + PN   + TV+ AC+ +  L  GK IH+ I  T G + ++++ +SL+ MY KC  
Sbjct: 116 D---LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           ++ A+R+F+ M  R+V SW ++I A+AQ+    EA+ ++ + + +    P+     SV++
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE----PSVRTFTSVLS 228

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC++LG L  G+  H ++   G E +  + +AL+ MYA+C  ++ + K+F R+    VV+
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 288

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +++MI   A+  L   +++ +++M   G++PN  TF  VL AC+  G +  G    D + 
Sbjct: 289 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
              G      + T +VD+    G LDEA  L   I+   +G   LW  L+      G
Sbjct: 349 GN-GYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEG---LWTVLIGGYSKQG 401


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 321/559 (57%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   ++ GF +  F  ++L + Y +      A ++FD+M + + V++T+++ GY   G 
Sbjct: 144 LHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 203

Query: 109 PQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            + A+L F+ M    LV  ++  F +V+ A   L D    K IH  +   GF+  + V +
Sbjct: 204 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRN 263

Query: 168 SLVDMYGKCNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +L+DMY K  DV+ A RV  +  G  NVVS TS+I  + +     EAL ++ E   Q  +
Sbjct: 264 ALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE 323

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+   +S+I  CA    L  G   H  V+++    +  V S LVDMY KCG ++ S +
Sbjct: 324 -PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQ 382

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +FN I   + + + ++I   A++G GR ++  F+ MI  GI+PN + FV +L ACSH+GL
Sbjct: 383 LFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGL 442

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG+++  SM   +GI P  +HY+C++D  GR GRLDEAYK    + + P+     W +
Sbjct: 443 VDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNA--YGWCS 500

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+ G  ++   A+  L++        +V+LS  YA  G+WE+V ++R  M+ + I
Sbjct: 501 LLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRI 560

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG SWV+   +T+ F + +    +  ++   L EL  ++KE GY+   T  +  ++E
Sbjct: 561 KKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYI-PDTSFLPCNLE 619

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D A+E I+  HSER+A+AF LIS+P    I + KNLR+C DCH  FK I  +  RD +VR
Sbjct: 620 DIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 679

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHF NG CSCGD+W
Sbjct: 680 DNSRFHHFVNGRCSCGDYW 698



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 10/427 (2%)

Query: 29  TKAHFIQQLQECKHLISLAS---VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQL 84
           T  H    LQ C     L     +H+ ++ SG  + +TF  NHLI  Y        A +L
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           F  M   N VS+T+L++G         AL  F  M    V P  F  ++  +A + L   
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP 138

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           + G Q+H      GF   L V S+L DMY KC  +  A RVFD M  ++ V+WT++I  +
Sbjct: 139 LPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 198

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           A+N     A+  FR+   +     +QH+  SV++A   L      K  H  V ++G E  
Sbjct: 199 AKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELE 258

Query: 265 DVVASALVDMYAKCGSVNYSDKVFN-RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V +AL+DMYAK   V  + +V        +VV+ TSMI G  +      +L ++ E+ 
Sbjct: 259 VAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELR 318

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            +G++PN+ TF  ++  C+   L+++G Q L +   K  +I D+   + +VDM G+ G +
Sbjct: 319 RQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLI 377

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYVTLS 442
             + +L   I+   D   + W  +++    HG    A++A +++I S  +  + A+V+L 
Sbjct: 378 SLSMQLFNEIEYRTD---IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 434

Query: 443 NTYALAG 449
              + AG
Sbjct: 435 TACSHAG 441


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/556 (35%), Positives = 317/556 (57%), Gaps = 4/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H   LKSG   + +  N LI  Y +      A Q+   +   ++  Y  ++ G +     
Sbjct: 146 HGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHM 205

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             A+ + + ++   +  N  T+ T+ + C+ L D+  GKQ+H  +       ++ + SS+
Sbjct: 206 AEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSI 265

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +DMYGKC +V   R  FD +  RNVVSWTSII A+ QN    EAL +F +        PN
Sbjct: 266 IDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIP-PN 324

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           ++ +A + N+ A L  L  G   H    +SG + N +V +AL+ MY K G +  +  VF+
Sbjct: 325 EYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFS 384

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            ++  +++T+ ++I G + +GLG+ +L +F +M++ G +PN VTF+GV+ AC+H  LVDE
Sbjct: 385 NMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDE 444

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G  + + + +++ I+P  +HYTC+V +L R+GRLDEA    +S Q++ D   + W TLL+
Sbjct: 445 GFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWD--VVSWRTLLN 502

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A  +H   D   + +  L++   +    Y+ LSN +A    W++V  +R  M+   + KE
Sbjct: 503 ACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKE 562

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG SW+EIR+  + F + +      + +   +++L  K++  GYV      V  D+EDE 
Sbjct: 563 PGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDN-VLHDIEDEQ 621

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           + + +  HSE+LA+A+GL+  P G  I ++KNLRMC DCH   KLIS +  R  VVRD N
Sbjct: 622 KVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDAN 681

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHF+NG CSCGD+W
Sbjct: 682 RFHHFQNGCCSCGDYW 697



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 149/270 (55%), Gaps = 3/270 (1%)

Query: 65  LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM-LGNL 123
           LN LIN YV+  +  +AR+LFD M   NVVS+++LMAGY+  G P     LF+KM + + 
Sbjct: 60  LNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDN 119

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           ++PNE+  AT I +C      + GKQ H +    G +++  V ++L+ +Y KC+DV  A 
Sbjct: 120 IFPNEYVIATAISSCDSQM-YVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAI 178

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           ++   +   ++  +  ++    Q+    EA+++ +    +  +  N     ++   CASL
Sbjct: 179 QILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEW-NNATYVTIFRLCASL 237

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             +  GK  H  +++S  + +  + S+++DMY KCG+V      F+R+ + +VV++TS+I
Sbjct: 238 KDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSII 297

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
               +      +L+LF++M    I PN+ T
Sbjct: 298 AAYFQNEFFEEALNLFSKMEIDCIPPNEYT 327



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 135/253 (53%), Gaps = 5/253 (1%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQY---NLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           ++K  +   +L  G+ IH H+      Y    +   +SL+++Y KC++V  AR++FD M 
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSW++++  + QN    E  E+F++   +    PN++++A+ I++C S    V GK
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDS-QMYVEGK 143

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG  ++SG EF+  V +AL+ +Y+KC  V  + ++   +    +  Y  ++ G  ++ 
Sbjct: 144 QCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHT 203

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
               ++D+   +IS GI+ N+ T+V +   C+    +  G Q + +   K  I  D    
Sbjct: 204 HMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQ-VHAQMLKSDIDCDVYIG 262

Query: 371 TCVVDMLGRTGRL 383
           + ++DM G+ G +
Sbjct: 263 SSIIDMYGKCGNV 275



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 1/201 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+++LKS    + +  + +I+ Y +       R  FD +   NVVS+TS++A Y     
Sbjct: 246 VHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEF 305

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF KM  + + PNE+T A +  + + L+ L  G Q+H   E  G + N++V ++
Sbjct: 306 FEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNA 365

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY K  D+  A+ VF  M C N+++W +II  H+ +  G EAL MF++    + +RP
Sbjct: 366 LIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDM-MATGERP 424

Query: 229 NQHMLASVINACASLGRLVSG 249
           N      VI ACA L  +  G
Sbjct: 425 NYVTFIGVILACAHLKLVDEG 445



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+   KSG   N    N LI  Y +      A+ +F  M   N++++ +++ G+ + G 
Sbjct: 347 LHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGL 406

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
            + AL +FQ M+     PN  TF  VI AC+ L  +  G     H+ + F     L   +
Sbjct: 407 GKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYT 466

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---HAQNAQGHEALEMFREFNYQ 223
            +V +  +   +D A           +VVSW +++ A   H    +G +  E   +   +
Sbjct: 467 CIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQL--E 524

Query: 224 SRD 226
            RD
Sbjct: 525 PRD 527


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/601 (33%), Positives = 328/601 (54%), Gaps = 37/601 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L  L  +H+ ++++  + + F  + LI+  +       A Q+F ++  PN+  Y
Sbjct: 22  LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIY 81

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            S + G+     P  +   + +   N + P+  T+  ++KAC+    L  G Q H  I  
Sbjct: 82  NSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIR 141

Query: 157 FGFQYNLVVCSSLVDMYG-------------------------------KCNDVDGARRV 185
            GF  ++ V +SLV MY                                K  DV  AR++
Sbjct: 142 HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKL 201

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLG 244
           FD M  +N+V+W+ +I  +A+N+   +A+E++  F  QS     N+ ++ SVI +CA LG
Sbjct: 202 FDKMPEKNLVTWSVMISGYAKNSFFDKAIELY--FLLQSEGVHANETVMVSVIASCAHLG 259

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G+ AH  ++R+    N ++ +ALVDMYA+CGS++ +  VF+++     +++T++I 
Sbjct: 260 ALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIA 319

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A +G    +L+ F+ M   G+ P ++TF  VL ACSH GLV+ G++  +SM R Y I 
Sbjct: 320 GFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIE 379

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P  +HY C+VD+LGR G+L EA K    + + P+    +WG LL A R+H   +IA  A 
Sbjct: 380 PRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAP--IWGALLGACRIHKNSEIAERAG 437

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
             LIE   + +  YV LSN YA   +WENV ++R  MK  G+ K PG +  E+  + + F
Sbjct: 438 KTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKF 497

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
             G+       ++  +  E+  K++  GY G     +F D+++E +E  +  HSE+LA+A
Sbjct: 498 TIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALF-DIDEEEKESNIHRHSEKLAIA 556

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           + ++       IRI+KNLR+C DCH   KLIS + ER+ +VRD NRFHHF+ G+CSC D+
Sbjct: 557 YAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDY 616

Query: 605 W 605
           W
Sbjct: 617 W 617


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/558 (37%), Positives = 328/558 (58%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I K GF +N F    L++ Y +      A ++FD+M E N+VS+ S++ G+ +   
Sbjct: 32  LHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 91

Query: 109 PQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
              A+ +F+ +L    V PNE + ++V+ AC+ +  L  G+Q+H  +  FG      V +
Sbjct: 92  YDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMN 151

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+DMY KC   D   ++F  +G R+VV+W  +++   QN +  EA   F     +    
Sbjct: 152 SLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI-L 210

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P++   ++V+++ ASL  L  G   H  +++ G   N  +  +L+ MYAKCGS+  + +V
Sbjct: 211 PDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQV 270

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  I + +V+++T+MI     +G     ++LF  M+S GI+P+ VTFV VL ACSH+G V
Sbjct: 271 FEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRV 330

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG+ H +SM + + + P  +HY C+VD+LGR G LDEA +  +S+ + P   P +WG L
Sbjct: 331 EEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPT--PSVWGAL 388

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R +G + +  EA+ +L E        YV L+N    +G  E  + +R  M   G+ 
Sbjct: 389 LGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVR 448

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPGCSW+++++ T+ F A +       E+  +L +LE+ +K++GYV  +T  V   +E+
Sbjct: 449 KEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYV-AETEFVTNHLEE 507

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
              E+ +  HSE+LALAFGL+++P    IRI KNLR C  CH V KL S I +R+ +VRD
Sbjct: 508 NEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRD 567

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFH F +G CSCGD+W
Sbjct: 568 INRFHRFADGFCSCGDYW 585



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 11/305 (3%)

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           +PN+FTF++++ A +    ++ G+Q+H+ I   GF  N+ V ++LVDMY KC D+  A R
Sbjct: 7   YPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVR 66

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M  RN+VSW S+IV    N     A+ +F++   +    PN+  ++SV++ACA++G
Sbjct: 67  VFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG 126

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G+  HGVVV+ G      V ++L+DMY KC   +   K+F  + +  VVT+  +++
Sbjct: 127 GLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVM 186

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G  +      + + F  M   GI P++ +F  VLH+ +    + +G    D +  K G +
Sbjct: 187 GFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII-KLGYV 245

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +      ++ M  + G L +AY++ + I+   D   + W  ++SA +LHG        +
Sbjct: 246 KNMCILGSLITMYAKCGSLVDAYQVFEGIE---DHNVISWTAMISAYQLHG-------CA 295

Query: 425 NQLIE 429
           NQ+IE
Sbjct: 296 NQVIE 300



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 28/236 (11%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H +I+K G++ N   L  LI  Y +      A Q+F+ + + NV+S+T++++ Y   G
Sbjct: 234 AIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHG 293

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSM-------LADLITGKQIHTHIETFGFQ 160
                + LF+ ML   + P+  TF  V+ ACS        LA   + K+IH  +      
Sbjct: 294 CANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHD-MNPGPEH 352

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQNAQGHEALEM 216
           Y     + +VD+ G+   +D A+R  + M  +   S W +++ A   +     G EA E 
Sbjct: 353 Y-----ACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAE- 406

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKV------AHGVVVRSGCEFNDV 266
            R F  +  +  N  +LA   N C   GRL            +GV    GC + DV
Sbjct: 407 -RLFEMEPYNPGNYVLLA---NMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDV 458


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 334/590 (56%), Gaps = 26/590 (4%)

Query: 33  FIQQLQECKHLISLASVHSEILKSG--------FLSNTFTLNHLINCYVRLKKTQV---- 80
            +  L  C  L +LA +H+  +K+G        F++   TL     C  +  +       
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTL-----CTEQGAEAPAHLAY 85

Query: 81  ARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALL----LFQKMLGNLVWPNEFTFATVI 135
           ARQ+FD +  P +V+ Y +L+ GY   G           +F +M+   V P+ +TF +++
Sbjct: 86  ARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           KAC+       G+Q H      G   +  V  +L++MY +C DV  AR +FD M    VV
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           S+ ++I A  +++   EAL +FRE   +   +P    L SV++ACA LG L  G+  H  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGL-KPTSVTLISVLSACALLGALELGRWIHDY 264

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           + +   +    V +AL+DMYAKCGS+  +  VF  + +     ++ M+V  A +G GR +
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREA 324

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           + +F EM  +G+KP+DVTF+GVL+ACSHSG+V EG+Q+ DSM R+YGI+   KHY CV D
Sbjct: 325 ISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTD 383

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +L R+G+L+ AYK    + + P    +LW TLLSA   HG VD+      +++E +    
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTA--ILWRTLLSACAGHGDVDMGKRVFERILELDDSHG 441

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV  SN  A  G WE ++ +R  M   G+ K PGCS +EI +  + F+AG+       
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E   ++ E+  ++K  GYV   + +  V++ +E +   +  HSE+LA++FGL++   G T
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +RI+KNLR+C DCH + KL+S +  R  ++RD+NRFHHF +G CSCGD+W
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 335/578 (57%), Gaps = 18/578 (3%)

Query: 40  CKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLK---KTQVARQLFDEMLEPNV 93
           C  L +L+    +HS  ++SG + +      L++ Y +          R++FD M + +V
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 94  VSYTSLMAGYI-NMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIH 151
           +S+T+L+ GY+ N      A+ LF +M+    V PN FTF++  KAC  L+D   GKQ+ 
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL 396

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                 G   N  V +S++ M+ K + ++ A+R F+ +  +N+VS+ + +    +N    
Sbjct: 397 GQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE 456

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +A ++  E   +     +    AS+++  A++G +  G+  H  VV+ G   N  V +AL
Sbjct: 457 QAFKLLSEITERELG-VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + MY+KCGS++ + +VFN + N +V+++TSMI G AK+G     L+ FN+MI  G+KPN+
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VT+V +L ACSH GLV EG +H +SMY  + I P  +HY C+VD+L R G L +A++   
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           ++    D   L+W T L A R+H   ++   A+ +++E +     AY+ LSN YA AG+W
Sbjct: 636 TMPFQAD--VLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKW 693

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           E    +R +MK   + KE GCSW+E+ D+ + FY G+       ++   L  L  ++K  
Sbjct: 694 EESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRC 753

Query: 512 GYVGGKTGLVF----VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           GYV   T LV      + ++  +E ++  HSE++A+AFGLIS  K   +R+ KNLR+C D
Sbjct: 754 GYV-PDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGD 812

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH+  K IS +  R+ V+RD+NRFHHF++G CSC D+W
Sbjct: 813 CHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 193/355 (54%), Gaps = 14/355 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML---EPNVVSYTSLMAGYIN 105
           VH+ +++     ++   N LI+ Y +   +  A  +F+ M    + +VVS++++MA Y N
Sbjct: 84  VHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGN 143

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK-QIHTHIETFGFQYNLV 164
            G+   A+ +F + L   + PN++ +  VI+ACS    +  G+  +   ++T  F+ ++ 
Sbjct: 144 NGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVC 203

Query: 165 VCSSLVDMYGKC-NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           V  SL+DM+ K  N  + A +VFD M   NVV+WT +I    Q     EA+  F +    
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM-VL 262

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC---GS 280
           S    ++  L+SV +ACA L  L  GK  H   +RSG    D V  +LVDMYAKC   GS
Sbjct: 263 SGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG--LVDDVECSLVDMYAKCSADGS 320

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKY-GLGRFSLDLFNEMISRG-IKPNDVTFVGVL 338
           V+   KVF+R+ + SV+++T++I G  K   L   +++LF+EMI++G ++PN  TF    
Sbjct: 321 VDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAF 380

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            AC +      G Q L   +++ G+  ++     V+ M  ++ R+++A +  +S+
Sbjct: 381 KACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFESL 434



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 210/423 (49%), Gaps = 21/423 (4%)

Query: 53  ILKSG-FLSNTFTLNHLINCYVRLKKT-QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
           ++K+G F S+      LI+ +V+ + + + A ++FD+M E NVV++T ++   + MG P+
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPR 251

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV--VCSS 168
            A+  F  M+ +    ++FT ++V  AC+ L +L  GKQ+H    ++  +  LV  V  S
Sbjct: 252 EAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLH----SWAIRSGLVDDVECS 307

Query: 169 LVDMYGKCN---DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-GHEALEMFREFNYQS 224
           LVDMY KC+    VD  R+VFD M   +V+SWT++I  + +N     EA+ +F E   Q 
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
              PN    +S   AC +L     GK   G   + G   N  VA++++ M+ K   +  +
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            + F  +S  ++V+Y + + G  +      +  L +E+  R +  +  TF  +L   ++ 
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G + +G + + S   K G+  +      ++ M  + G +D A ++   ++   +   + W
Sbjct: 488 GSIRKG-EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME---NRNVISW 543

Query: 405 GTLLSASRLHGRVDIAVEASNQLIE----SNQQVANAYVTLSNTYALAGE-WENVHSLRS 459
            ++++    HG     +E  NQ+IE     N+    A ++  +   L  E W + +S+  
Sbjct: 544 TSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYE 603

Query: 460 EMK 462
           + K
Sbjct: 604 DHK 606



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 180/362 (49%), Gaps = 20/362 (5%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETF 157
           L+  ++N G  + A+     M  + + P +  TF++++K+C    D   GK +H  +  F
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQNAQGHEAL 214
             + + V+ +SL+ +Y K  D   A  VF+ M   G R+VVSW++++  +  N +  +A+
Sbjct: 92  DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAI 151

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVD 273
           ++F EF  +    PN +   +VI AC++   +  G+V  G ++++G   +DV V  +L+D
Sbjct: 152 KVFVEF-LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLID 210

Query: 274 MYAKC-GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           M+ K   S   + KVF+++S  +VVT+T MI    + G  R ++  F +M+  G + +  
Sbjct: 211 MFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKF 270

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT---GRLDEAYKL 389
           T   V  AC+    +  G Q L S   + G++ D +    +VDM  +    G +D+  K+
Sbjct: 271 TLSSVFSACAELENLSLGKQ-LHSWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKV 327

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ--VANAYVTLSNTYAL 447
              ++   D   + W  L++        ++A EA N   E   Q  V   + T S+ +  
Sbjct: 328 FDRME---DHSVMSWTALITG--YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382

Query: 448 AG 449
            G
Sbjct: 383 CG 384



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 11/243 (4%)

Query: 7   RNLIFTLAASSLTRQNKRS---SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTF 63
           RNL F  A   L+   +R    S  T A  +  +     +     +HS+++K G   N  
Sbjct: 451 RNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
             N LI+ Y +      A ++F+ M   NV+S+TS++ G+   G     L  F +M+   
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEG 570

Query: 124 VWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           V PNE T+  ++ ACS +  +  G +  ++  E    +  +   + +VD+  +   +  A
Sbjct: 571 VKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA 630

Query: 183 RRVFDLMGCR-NVVSWTSIIVA---HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
               + M  + +V+ W + + A   H+    G  A     E +    + P  ++  S I 
Sbjct: 631 FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD---PNEPAAYIQLSNIY 687

Query: 239 ACA 241
           ACA
Sbjct: 688 ACA 690


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 326/570 (57%), Gaps = 9/570 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           +  C  + +   +H+ + KS    + F  + L+ CY +L   + A +LFD+M   ++VS+
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSW 108

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
            SL++G+       ++L  F  M   + V PNE T  ++I ACS   D   GK IH    
Sbjct: 109 NSLISGFSRC--LHMSLTAFYTMKFEMSVKPNEVTILSMISACSGALD--AGKYIHGFGI 164

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G    + V +SL++MYGK  D+  A R+F+ +   N VSW SII A   N    E ++
Sbjct: 165 KVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGID 224

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
            F +      ++    +LA ++ AC  LG     +  HG++  +G      +A+AL+D Y
Sbjct: 225 YFNKMRRLGIEQDEGTILA-LLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTY 283

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           AK G ++ S  VF  +     V +T+M+ G A +GLGR ++ LF  M ++G++P+ VTF 
Sbjct: 284 AKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFT 343

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            +L ACSHSGLV+EG  + + M   YGI P   HY+C+VD+LGR G L++AY++ +++ +
Sbjct: 344 HLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           +P+ G  +WG LL A R+HG +++  E +  LI         Y+ LSN Y+ +  W++  
Sbjct: 404 EPNAG--VWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R+ +K  G+ + PG S +E  ++ + F+ G+       ++ S L EL  K+++ GY  
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGY-S 520

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
            KT  V  DVE+E +E+++  HSE+LA+AFGL+   +G  + I KNLR+C DCH   KLI
Sbjct: 521 SKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLI 580

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S I +R  ++RD  RFHHF +G CSC D+W
Sbjct: 581 SLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 336/578 (58%), Gaps = 10/578 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C +L  L     +H+ I   G   +    N L+  Y R K    A ++F  + 
Sbjct: 224 FTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP 283

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             +VVS+++++A +        A+  + KM    V PN +TFA+V+ AC+ + DL  G+ 
Sbjct: 284 RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRA 343

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  I   G++  LV  ++LVD+Y     +D AR +FD +  R+   WT +I  +++  Q
Sbjct: 344 VHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSK--Q 401

Query: 210 GHEA--LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
           GH    LE++RE    ++    + + + VI+ACASLG     + AH  +   G   + V+
Sbjct: 402 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 461

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           A++LV+MY++ G++  + +VF+++S+   + +T++I G AK+G    +L L+ EM   G 
Sbjct: 462 ATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGA 521

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +P+++TF+ VL+ACSH+GL ++G Q   S+   Y + P+  HY+C++D+L R GRL +A 
Sbjct: 522 EPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAE 581

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +L  ++ V+P+   + W +LL ASR+H  V  A  A+ Q+ + +     +YV LSN +A+
Sbjct: 582 ELINAMPVEPN--DVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAV 639

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            G    + S+R+ M   G+ K  G SW+E+ DQ + F  G+    R  E+ + L+ L  K
Sbjct: 640 TGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPK 699

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           +KE GYV  ++  V  DV ++ +E ++ LHSE+LA+AFGLI+   G T+RI   LR+C D
Sbjct: 700 IKEAGYV-PESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHD 758

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   K IS I  R+ +VRD +RFH FR+G CSCGD+W
Sbjct: 759 CHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 214/418 (51%), Gaps = 19/418 (4%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           MK+SL    +       L  +   S   +  H+   L++C+ L S+  +H  I  SG  S
Sbjct: 1   MKRSLAPAKVRRF---QLKEEKAGSRFDSSGHYRDALRQCQDLESVRQIHDRI--SGAAS 55

Query: 61  -NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            N F  N ++  Y +      AR  FD +   N  S+ S++  Y   G  + AL L+++M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCND 178
               + PN   + TV+ AC+ +  L  GK IH+ I  T G + ++++ +SL+ MY KC  
Sbjct: 116 D---LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 179 VDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           ++ A+R+F+ M G R+V SW ++I A+AQ+    EA+ ++ + + +    P+     SV+
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE----PSVRTFTSVL 228

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           +AC++LG L  G+  H ++   G E +  + +AL+ MYA+C  ++ + K+F R+    VV
Sbjct: 229 SACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVV 288

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++++MI   A+  L   +++ +++M   G++PN  TF  VL AC+  G +  G    D +
Sbjct: 289 SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 348

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
               G      + T +VD+    G LDEA  L   I+   +G   LW  L+      G
Sbjct: 349 LGN-GYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEG---LWTVLIGGYSKQG 402


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 317/544 (58%), Gaps = 10/544 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM-GQPQIALLLFQKMLG 121
           F  N L++ Y +      A +LFD M E NVV++T+++A   N  G+ + AL     M  
Sbjct: 116 FVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWR 175

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           + V PN +TF++V+ AC     L     +H      G   ++ V SSL+D Y K  D+DG
Sbjct: 176 DGVAPNAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDG 232

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
            RRVFD M  R++V W SII   AQ+  G  A+E+F      +    NQ  L SV+ AC 
Sbjct: 233 GRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMK-DAGFSANQGTLTSVLRACT 291

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            +  L +G+  H  V++   E + ++ +AL+DMY KCGS+  ++ +F+R+    V+++++
Sbjct: 292 GMVMLEAGRQVHAHVLKY--ERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWST 349

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G A+ G    +L +F+ M S G+ PN +T VGVL ACSH+GLV++G  +  SM + +
Sbjct: 350 MISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLF 409

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           GI P+ +H+ C+VD+LGR G+LDEA +  + + ++PD   ++W TLL A R+H   ++A 
Sbjct: 410 GIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDA--VIWRTLLGACRMHKSGNLAA 467

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            A+ ++++       A V LSNTYA   +W +       M+  G+ KEPG SW+E+    
Sbjct: 468 YAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHV 527

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F AG+        ++  L  L  ++   GYV  +T  V  D+  E +E+++  HSE++
Sbjct: 528 HVFIAGDLSHPCSDTIVQELNRLIGRISALGYV-PQTEFVLQDLAIEQKEDLLKYHSEKM 586

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFG +    G  IRIMKNLR+C DCH   KL+S    R  ++RD  RFHHF++G+CSC
Sbjct: 587 AIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSC 646

Query: 602 GDFW 605
           GD+W
Sbjct: 647 GDYW 650



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 120/217 (55%), Gaps = 3/217 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L  C     LA++H+  +K G  S+ F  + LI+ Y++L      R++FDEM+  +
Sbjct: 185 FSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRD 244

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V + S++AG+   G    A+ LF +M       N+ T  +V++AC+ +  L  G+Q+H 
Sbjct: 245 LVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHA 304

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+    ++ +L++ ++L+DMY KC  ++ A  +F  M  R+V+SW+++I   AQN +  E
Sbjct: 305 HV--LKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAE 362

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           AL +F     +    PN+  +  V+ AC+  G +  G
Sbjct: 363 ALRVFDLMKSEGV-APNRITMVGVLFACSHAGLVEDG 398



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 168/356 (47%), Gaps = 25/356 (7%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFG--FQYN------LVVCSSLVDMYGKCND 178
           +  +   ++K C        G+ IH H+E  G    Y+      + V +SLV MY K   
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASV 236
           +D A R+FD M  RNVV+WT+++ A A NA G +  E  R      RD   PN +  +SV
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALA-NADGRKE-EALRFLVAMWRDGVAPNAYTFSSV 188

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           + AC + G L +    H   V+ G + +  V S+L+D Y K G ++   +VF+ +    +
Sbjct: 189 LGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDL 245

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V + S+I G A+ G G  +++LF  M   G   N  T   VL AC+   +++ G Q + +
Sbjct: 246 VVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQ-VHA 304

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
              KY    D   +  ++DM  + G L++A  L   +   P    + W T++S    +G+
Sbjct: 305 HVLKYE--RDLILHNALLDMYCKCGSLEDAEALFHRM---PQRDVISWSTMISGLAQNGK 359

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYAL--AGEWEN-VHSLRSEMKRTGIHKE 469
              A+   + L++S     N    +   +A   AG  E+  +  RS  K  GI  E
Sbjct: 360 SAEALRVFD-LMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPE 414


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/551 (37%), Positives = 317/551 (57%), Gaps = 6/551 (1%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           GF +  F  ++L + Y +      A ++FD+M + + V++T+++ GY   G  + A+L F
Sbjct: 301 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 360

Query: 117 QKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           + M    LV  ++  F +V+ A   L D    K IH  +   GF+  + V ++L+DMY K
Sbjct: 361 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAK 420

Query: 176 CNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
             DV+ A RV  +  G  NVVS TS+I  + +     EAL ++ E   Q  + PN+   +
Sbjct: 421 SMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE-PNEFTFS 479

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           S+I  CA    L  G   H  V+++    +  V S LVDMY KCG ++ S ++FN I   
Sbjct: 480 SMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYR 539

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           + + + ++I   A++G GR ++  F+ MI  GI+PN + FV +L ACSH+GLVDEG+++ 
Sbjct: 540 TDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYF 599

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            SM   +GI P  +HY+C++D  GR GRLDEAYK    + + P+     W +LL A R+ 
Sbjct: 600 YSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNA--YGWCSLLGACRMR 657

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474
           G  ++   A+  L++        +V+LS  YA  G+WE+V ++R  M+ + I K PG SW
Sbjct: 658 GSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSW 717

Query: 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIV 534
           V+   +T+ F + +    +  ++   L EL  ++KE GY+   T  +  ++ED A+E I+
Sbjct: 718 VDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYI-PDTSFLPCNLEDIAKERIL 776

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSER+A+AF LIS+P    I + KNLR+C DCH  FK I  +  RD +VRD +RFHHF
Sbjct: 777 RYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHF 836

Query: 595 RNGSCSCGDFW 605
            NG CSCGD+W
Sbjct: 837 VNGRCSCGDYW 847



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 206/427 (48%), Gaps = 11/427 (2%)

Query: 29  TKAHFIQQLQECKHLISLAS---VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQL 84
           T  H    LQ C     L     +H+ ++ SG  + +TF  NHLI  Y        A +L
Sbjct: 169 TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 228

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           F  M   N VS+T+L++G         AL  F  M    V P  F  ++  +A + L   
Sbjct: 229 FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP 288

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           +  +   T   + GF   L V S+L DMY KC  +  A RVFD M  ++ V+WT++I  +
Sbjct: 289 LRARSC-TASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 347

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           A+N     A+  FR+   +     +QH+  SV++A   L      K  H  V ++G E  
Sbjct: 348 AKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELE 407

Query: 265 DVVASALVDMYAKCGSVNYSDKVFN-RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V +AL+DMYAK   V  + +V        +VV+ TSMI G  +      +L ++ E+ 
Sbjct: 408 VAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELR 467

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            +G++PN+ TF  ++  C+   L+++G Q L +   K  +I D+   + +VDM G+ G +
Sbjct: 468 RQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLI 526

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYVTLS 442
             + +L   I+   D   + W  +++    HG    A++A +++I S  +  + A+V+L 
Sbjct: 527 SLSMQLFNEIEYRTD---IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 583

Query: 443 NTYALAG 449
              + AG
Sbjct: 584 TACSHAG 590



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 196/497 (39%), Gaps = 85/497 (17%)

Query: 29  TKAHFIQQLQECKHLISLAS---VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQL 84
           T  H    LQ C     L     +H+ ++ SG  + +TF  NHLI  Y        A +L
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 85  FDEMLEPNVVSYTSLMAG--------------------------------YINMGQPQIA 112
           F  M   N VS+T+L++G                                + N   P+  
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHT 138

Query: 113 L---------LLFQKMLGNLVW----PNEFT---FATVIKACSMLADLITGKQIHTHIET 156
           L          L  K  G  +W    P   T    A+++++C    DL  G+ +H  +  
Sbjct: 139 LAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVL 198

Query: 157 FGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN----AQGH 211
            G    +  + + L+ MY  C D+  A R+F  M  RN VSWT+++   +QN        
Sbjct: 199 SGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALA 258

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
               M R     +R   +    A+         R  +   + G       +    VAS L
Sbjct: 259 AFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGF------DTELFVASNL 312

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
            DMY+KCG ++ + +VF+++     V +T+MI G AK G    ++  F +M   G+   D
Sbjct: 313 ADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGAD 372

Query: 332 V-TFVGVLHACSHSGLVDEGI--QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
              F  VL A   SG + +G   + +     K G   +      ++DM  ++  ++ A +
Sbjct: 373 QHVFCSVLSA---SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 429

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVD---------IAVEASNQLIESNQQVANAYV 439
           +   +++DP G    W  +   S + G ++         I VE   Q +E N+   ++ +
Sbjct: 430 V---LKIDPGG----WNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMI 482

Query: 440 TLSNTYALAGEWENVHS 456
                 AL  +   +H+
Sbjct: 483 KGCAMQALLEQGAQLHA 499



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           A +H++++K+  + ++F  + L++ Y +     ++ QLF+E+     +++ +++  +   
Sbjct: 495 AQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQH 554

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVV 165
           G  + A+  F +M+ + + PN   F +++ ACS    +  G K  ++  E  G +     
Sbjct: 555 GHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEH 614

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            S ++D YG+   +D A +    M  + N   W S++ A
Sbjct: 615 YSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGA 653


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/641 (34%), Positives = 346/641 (53%), Gaps = 77/641 (12%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-- 91
           ++ C  L +L +   +H   L SG   ++  L+ L++ YV+    + AR +FD++ +P  
Sbjct: 81  IKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGV 140

Query: 92  ---------------------------------NVVSYTSLMAGYINMGQPQIALLLFQK 118
                                            N+VS+  +++G+   G    A+L+FQ 
Sbjct: 141 VTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQN 200

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M    + P+  + ++V+ A   L   + G QIH ++   G   +  V S+L+DMYGKC  
Sbjct: 201 MHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCAC 260

Query: 179 VDGARRVF------DLMGCR---------------------------NVVSWTSIIVAHA 205
                 VF      D+  C                            NVVSWTS+I + +
Sbjct: 261 ASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCS 320

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           QN +  EALE+FRE   +   +PN   +  ++ AC ++  L+ GK AH   +R+G  FND
Sbjct: 321 QNGKDMEALELFREMQIEGV-KPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGI-FND 378

Query: 266 V-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
           V V SAL+DMYAKCG +  S   F+ + N ++V++ S++ G A +G    ++++F  M  
Sbjct: 379 VYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQR 438

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G KP+ V+F  VL AC+  GL +EG  + DSM R +G+    +HY+C+V +LGR+GRL+
Sbjct: 439 CGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLE 498

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           EAY + K +  +PD    +WG LLS+ R+H RVD+   A+ ++ E   +    Y+ LSN 
Sbjct: 499 EAYAMIKQMPFEPDS--CVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNI 556

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
           YA    W  V  +R  M+  G+ K PG SW+EI+++ +   AG++   +  +++  L +L
Sbjct: 557 YASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKL 616

Query: 505 ERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRM 564
             +MK+ GYV   T  V  DVE++ +E+I+  HSE+LA+  GL++   G  ++++KNLR+
Sbjct: 617 TVEMKKSGYV-PHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRI 675

Query: 565 CRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CRDCH V K ISD  +R+  VRD NRFH F+ G CSCGD+W
Sbjct: 676 CRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 162/381 (42%), Gaps = 85/381 (22%)

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           +F  ML   + P+     TVIK C+ L+ L TGKQ+H      G   + VV SSL+ MY 
Sbjct: 61  VFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYV 120

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-------- 226
           + + +  AR VFD +    VV+ +++I   A+  +  E  E+F    YQ+RD        
Sbjct: 121 QFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELF----YQTRDLGVELNLV 176

Query: 227 ------------------------------RPNQHMLASVINACASLGRLVSGKVAHGVV 256
                                         +P+   ++SV+ A   L   + G   H  V
Sbjct: 177 SWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYV 236

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS------------------------ 292
           ++ G   +  V SAL+DMY KC   +    VFN +                         
Sbjct: 237 IKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNAL 296

Query: 293 ---------NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
                    + +VV++TSMI   ++ G    +L+LF EM   G+KPN VT   +L AC +
Sbjct: 297 EVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGN 356

Query: 344 -SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD--PDGG 400
            + L+     H  S+  + GI  D    + ++DM  + GR+     LA  +  D  P+  
Sbjct: 357 IAALLHGKAAHCFSL--RNGIFNDVYVGSALIDMYAKCGRM-----LASRLCFDMMPNRN 409

Query: 401 PLLWGTLLSASRLHGRVDIAV 421
            + W +L++   +HG+   A+
Sbjct: 410 LVSWNSLMAGYAMHGKTFEAI 430


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 318/580 (54%), Gaps = 33/580 (5%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           + HFI  +     L  L  +H++I      SN+  +  LI+    LK    A  +F    
Sbjct: 40  ETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFD 99

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PN+  + +L+ G     + + ++  F  ML   + P+  T   V+K+ + L D+  G+ 
Sbjct: 100 HPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRC 159

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN----VVSWTSIIVAHA 205
           +H  +   G +++  V  SLVDMY K  ++    ++FD    RN    ++ W  +     
Sbjct: 160 LHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGV----- 214

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
                                RPN   + S + AC  +G L  G+  H  +  +G + N 
Sbjct: 215 ---------------------RPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNR 253

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            + +ALVDMYAKCG++  + +VF       ++T++ MI G A +G    +L  F +M S 
Sbjct: 254 GIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSA 313

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           GI P++V F+ +L ACSHSG VD+G+   +SM   Y I P  KHYT +VD+LGR GRLDE
Sbjct: 314 GINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDE 373

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           A    +S+ ++PD   ++WG L  A R H  +++A   + +L++   +   +YV LSN Y
Sbjct: 374 ALSFIQSMPINPDF--VIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVY 431

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           A  G WE+V  +R+ MK  G+ K+PG S++E+  Q ++F AG+    R  E+   L E+ 
Sbjct: 432 AAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEIT 491

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
              K+ GY+  +T  V  ++E+E +E+ +G HSE+LALAFGLIS   G TIRI+KNLR+C
Sbjct: 492 ASAKQEGYM-PETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVC 550

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH + K  S +  R+ ++RD+ RFHHF++G+CSCGD+W
Sbjct: 551 GDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 315/560 (56%), Gaps = 7/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML-EPNVVSYTSLMAGYINMG 107
           +H+ +L SG   +      L++ Y       +AR++FDEM  + NV  +  L+  Y   G
Sbjct: 90  LHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDG 149

Query: 108 QPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
             + A+ L++ ML    + P+ FT+  V+KAC+ L DL  G+++H  +    +  ++ VC
Sbjct: 150 PCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVC 209

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+DMY KC  +D A  VF+    R+   W S+I A  QN +  EAL + R    +   
Sbjct: 210 TGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEG-I 268

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P    L S I+A A    L  G+  HG   R G    D + ++L+DMYAK G V  +  
Sbjct: 269 APTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHV 328

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSG 345
           +F ++ +  ++++ +MI G   +G    + +LF+ M S   + P+ +TFVGVL AC+H G
Sbjct: 329 LFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGG 388

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           +V E  +  D M   Y I P  +HYTC+VD+LG +GR  EA  + K + V PD G  +WG
Sbjct: 389 MVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSG--IWG 446

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL+  ++H  V++A  A  +LIE   + A  YV LSN YA +G+WE    +R  M   G
Sbjct: 447 ALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRG 506

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           + K   CSW+E++ + + F  G+A   R  ++   L  LE  + + GYV   T  VF +V
Sbjct: 507 LKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTP-VFHNV 565

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ED+ +  +V  HSERLA+AFGLIS P    + + KNLR+C DCH V KLIS I +R+ ++
Sbjct: 566 EDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIII 625

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RDVNR+HHF NG CSC D W
Sbjct: 626 RDVNRYHHFVNGECSCKDHW 645



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 152/316 (48%), Gaps = 6/316 (1%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N   +AT++++C +   +  G+Q+H  +   G   + V+ + LVD+Y  C  V  ARRVF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 187 DLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           D M  + NV  W  +I A+A++     A+E++R        +P+      V+ ACA+L  
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLD 186

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L +G+  H  V+R+    +  V + L+DMYAKCG ++ +  VFN  +      + SMI  
Sbjct: 187 LSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAA 246

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
             + G    +L L   M + GI P   T V  + A + +  +  G +     +R+ G   
Sbjct: 247 CGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRR-GFGS 305

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             K  T ++DM  ++G +  A+ L + +        + W  ++    +HG  D A E  +
Sbjct: 306 QDKLKTSLLDMYAKSGWVMVAHVLFEQLL---HRELISWNAMICGFGMHGHADHAFELFS 362

Query: 426 QLIESNQQVANAYVTL 441
           ++  S  QV   ++T 
Sbjct: 363 RM-RSEAQVMPDHITF 377


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/565 (36%), Positives = 323/565 (57%), Gaps = 6/565 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           L  L  +H+ I+ +G       +  L++  Y         R+LF  + +P+   + SL+ 
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
                  PQ +LL +++ML   +  + +TF+ VIK+ + L     G+ IH H+   G+  
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  V ++LV  Y K   V  AR+VFD M  + VV+W S+I  + QN  G EA+E+F  F 
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELF--FL 209

Query: 222 YQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            Q    +P+     S+++ACA +G +  G   H  + R+  + N V+ +AL++MY++CG+
Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           V+ + +VF+ +   ++V +T+MI G   +G G  +++LFNEM   G +PN+VTFV VL A
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           C+H+GLVDEG Q   +M ++YG++P  +H  C+VDMLGR G L+EAY+  K+     +  
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTS-PKEPA 388

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P +W  +L A ++H   D+ VE +  L+    +    YV LSN YALAG  + V  +R+ 
Sbjct: 389 PAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNI 448

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M R  + KE G S +++  + Y F  G+    + +++   L EL  + +E GY+     +
Sbjct: 449 MIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESV 508

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           +    E+E    +   HSE+LA+AFGL+    G+ IRI+KNLRMC DCH   K IS I  
Sbjct: 509 MHEVEEEEREYAL-RYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIAN 567

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+  VRD  RFHHF++GSCSC D+W
Sbjct: 568 REINVRDRLRFHHFKDGSCSCQDYW 592


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/546 (36%), Positives = 327/546 (59%), Gaps = 13/546 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T  ++I  Y ++ +   AR LFDEM   NVVS+T+++ GY+   Q  IA  LF+ M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                 NE ++  ++K  +    L    ++   +       ++V C++++  +G+  +V 
Sbjct: 312 EK----NEVSWTAMLKGYTNCGRLDEASELFNAMPI----KSVVACNAMILCFGQNGEVP 363

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR+VFD M  ++  +W+++I  + +     +ALE+FR    +   RPN   L SV++ C
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG-IRPNFPSLISVLSVC 422

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A L  L  G+  H  +VRS  + +  VAS L+ MY KCG++  + +VF+R +   VV + 
Sbjct: 423 AGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWN 482

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           S+I G A++GLG  +L +F++M   GI P+DVTFVGVL ACS++G V +G++  +SM  K
Sbjct: 483 SIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETK 542

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           Y +    +HY C+VD+LGR G+L+EA  L + + ++ D   ++WG LL A R H ++D+A
Sbjct: 543 YQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA--IIWGALLGACRTHMKLDLA 600

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+ +L+    + A  ++ LSN YA  G W++V  LR  M+   + K PGCSW+ +  +
Sbjct: 601 EVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKK 660

Query: 481 TYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            + F  G++      SE+  +L  L   ++E GY   ++  V  DV++E + + +  HSE
Sbjct: 661 VHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQS-FVLHDVDEEEKVQSLEYHSE 719

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+A+GL+ IP G+ IR+MKNLR+C DCH   KLI+ +  R+ ++RD NRFHHF++GSC
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 600 SCGDFW 605
           SC D+W
Sbjct: 780 SCRDYW 785



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 2/259 (0%)

Query: 51  SEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
           SE+  +  + +    N +I C+ +  +   ARQ+FD+M E +  ++++++  Y   G   
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
            AL LF+ M    + PN  +  +V+  C+ LA+L  G++IH  +    F  ++ V S L+
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
            MY KC ++  A++VFD    ++VV W SII  +AQ+  G EAL +F + ++ S   P+ 
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF-SGIMPDD 513

Query: 231 HMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
                V++AC+  G +  G ++ + +  +   E      + +VD+  + G +N +  +  
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIE 573

Query: 290 RISNPSVVTYTSMIVGAAK 308
           ++   +       ++GA +
Sbjct: 574 KMPMEADAIIWGALLGACR 592



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 180/435 (41%), Gaps = 89/435 (20%)

Query: 53  ILKSGFLSN-TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           +L   + SN   + N LI  Y RL + + AR +FDEM + N++S+ S++AGY    +PQ 
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSL 169
           A  +F KM          +    I    +++  I    I+   E F    + N+V  +++
Sbjct: 148 AQNMFDKM----------SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAM 197

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           V  Y K   +  A  +F  M  +NVVSWT ++    Q  +  EA  +F          P 
Sbjct: 198 VRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM-------PE 250

Query: 230 QHML--ASVINACASLGRLVSGKVAHGVVVRSGC-------------------------- 261
           + ++   ++I     +GRLV  ++    + R                             
Sbjct: 251 KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM 310

Query: 262 -EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV----------------------- 297
            E N+V  +A++  Y  CG ++ + ++FN +   SVV                       
Sbjct: 311 PEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFD 370

Query: 298 --------TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
                   T+++MI    + GL   +L+LF  M   GI+PN  + + VL  C+    +D 
Sbjct: 371 QMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDH 430

Query: 350 GIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           G + H   +  ++ +  D    + ++ M  + G L +A ++     V      ++W +++
Sbjct: 431 GREIHAQLVRSQFDL--DVYVASVLLSMYIKCGNLAKAKQVFDRFAVK---DVVMWNSII 485

Query: 409 SASRLHGRVDIAVEA 423
           +    HG   + VEA
Sbjct: 486 TGYAQHG---LGVEA 497



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 11  FTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLN 66
             L A  L R  +R          I  L  C  L +L     +H+++++S F  + +  +
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVAS 451

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L++ Y++      A+Q+FD     +VV + S++ GY   G    AL +F  M  + + P
Sbjct: 452 VLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP 511

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           ++ TF  V+ ACS   ++  G +I   +ET +  +  +   + +VD+ G+   ++ A  +
Sbjct: 512 DDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDL 571

Query: 186 FDLMGCR-NVVSWTSIIVA 203
            + M    + + W +++ A
Sbjct: 572 IEKMPMEADAIIWGALLGA 590


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 321/559 (57%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   ++ GF +  F  ++L + Y +      A ++FD+M + + V++T+++ GY   G 
Sbjct: 63  LHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 122

Query: 109 PQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            + A+L F+ M    LV  ++  F +V+ A   L D    K IH  +   GF+  + V +
Sbjct: 123 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRN 182

Query: 168 SLVDMYGKCNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +L+DMY K  DV+ A RV  +  G  NVVS TS+I  + +     EAL ++ E   Q  +
Sbjct: 183 ALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE 242

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+   +S+I  CA    L  G   H  V+++    +  V S LVDMY KCG ++ S +
Sbjct: 243 -PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQ 301

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +FN I   + + + ++I   A++G GR ++  F+ MI  GI+PN + FV +L ACSH+GL
Sbjct: 302 LFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGL 361

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG+++  SM   +GI P  +HY+C++D  GR GRLDEAYK    + + P+     W +
Sbjct: 362 VDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNA--YGWCS 419

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+ G  ++   A+  L++        +V+LS  YA  G+WE+V ++R  M+ + I
Sbjct: 420 LLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRI 479

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG SWV+   +T+ F + +    +  ++   L EL  ++KE GY+   T  +  ++E
Sbjct: 480 KKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYI-PDTSFLPCNLE 538

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D A+E I+  HSER+A+AF LIS+P    I + KNLR+C DCH  FK I  +  RD +VR
Sbjct: 539 DIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 598

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHF NG CSCGD+W
Sbjct: 599 DNSRFHHFVNGRCSCGDYW 617



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 181/364 (49%), Gaps = 6/364 (1%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M   N VS+T+L++G         AL  F  M    V P  F  ++  +A + L   + G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
            Q+H      GF   L V S+L DMY KC  +  A RVFD M  ++ V+WT++I  +A+N
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
                A+  FR+   +     +QH+  SV++A   L      K  H  V ++G E    V
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 268 ASALVDMYAKCGSVNYSDKVFN-RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
            +AL+DMYAK   V  + +V        +VV+ TSMI G  +      +L ++ E+  +G
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 240

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++PN+ TF  ++  C+   L+++G Q L +   K  +I D+   + +VDM G+ G +  +
Sbjct: 241 VEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLS 299

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYVTLSNTY 445
            +L   I+   D   + W  +++    HG    A++A +++I S  +  + A+V+L    
Sbjct: 300 MQLFNEIEYRTD---IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTAC 356

Query: 446 ALAG 449
           + AG
Sbjct: 357 SHAG 360



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 21/279 (7%)

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  RN VSWT+++   +QN   H           ++   P +  L+S   A A+LG  + 
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLM-HADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLP 59

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G   H V VR G +    VAS L DMY+KCG ++ + +VF+++     V +T+MI G AK
Sbjct: 60  GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 119

Query: 309 YGLGRFSLDLFNEMISRGIKPNDV-TFVGVLHACSHSGLVDEGI-QHLDSMYRKYGIIPD 366
            G    ++  F +M   G+   D   F  VL A    GL D  + + +     K G   +
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA--SGGLKDGWLSKSIHCCVTKAGFELE 177

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD-------- 418
                 ++DM  ++  ++ A ++   +++DP G    W  +   S + G ++        
Sbjct: 178 VAVRNALIDMYAKSMDVESASRV---LKIDPGG----WNVVSGTSMIDGYIETDCVEEAL 230

Query: 419 -IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
            I VE   Q +E N+   ++ +      AL  +   +H+
Sbjct: 231 VIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHA 269


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/546 (36%), Positives = 327/546 (59%), Gaps = 13/546 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  T  ++I  Y ++ +   AR LFDEM   NVVS+T+++ GY+   Q  IA  LF+ M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                 NE ++  ++K  +    L    ++   +       ++V C++++  +G+  +V 
Sbjct: 312 EK----NEVSWTAMLKGYTNCGRLDEASELFNAMPI----KSVVACNAMILCFGQNGEVP 363

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR+VFD M  ++  +W+++I  + +     +ALE+FR    +   RPN   L SV++ C
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG-IRPNFPSLISVLSVC 422

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A L  L  G+  H  +VRS  + +  VAS L+ MY KCG++  + +VF+R +   VV + 
Sbjct: 423 AGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWN 482

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           S+I G A++GLG  +L +F++M   GI P+DVTFVGVL ACS++G V +G++  +SM  K
Sbjct: 483 SIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETK 542

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           Y +    +HY C+VD+LGR G+L+EA  L + + ++ D   ++WG LL A R H ++D+A
Sbjct: 543 YQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA--IIWGALLGACRTHMKLDLA 600

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+ +L+    + A  ++ LSN YA  G W++V  LR  M+   + K PGCSW+ +  +
Sbjct: 601 EVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKK 660

Query: 481 TYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            + F  G++      SE+  +L  L   ++E GY   ++  V  DV++E + + +  HSE
Sbjct: 661 VHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQS-FVLHDVDEEEKVQSLEYHSE 719

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+A+GL+ IP G+ IR+MKNLR+C DCH   KLI+ +  R+ ++RD NRFHHF++GSC
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 600 SCGDFW 605
           SC D+W
Sbjct: 780 SCRDYW 785



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 2/259 (0%)

Query: 51  SEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQ 110
           SE+  +  + +    N +I C+ +  +   ARQ+FD+M E +  ++++++  Y   G   
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
            AL LF+ M    + PN  +  +V+  C+ LA+L  G++IH  +    F  ++ V S L+
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
            MY KC ++  A++VFD    ++VV W SII  +AQ+  G EAL +F + ++ S   P+ 
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF-SGIMPDD 513

Query: 231 HMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
                V++AC+  G +  G ++ + +  +   E      + +VD+  + G +N +  +  
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIE 573

Query: 290 RISNPSVVTYTSMIVGAAK 308
           ++   +       ++GA +
Sbjct: 574 KMPMEADAIIWGALLGACR 592



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 180/435 (41%), Gaps = 89/435 (20%)

Query: 53  ILKSGFLSN-TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           +L   + SN   + N LI  Y RL + + AR +FDEM + N++S+ S++AGY    +PQ 
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSL 169
           A  +F KM          +    I    +++  I    I+   E F    + N+V  +++
Sbjct: 148 AQNMFDKM----------SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAM 197

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           V  Y K   +  A  +F  M  +NVVSWT ++    Q  +  EA  +F          P 
Sbjct: 198 VRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM-------PE 250

Query: 230 QHML--ASVINACASLGRLVSGKVAHGVVVRSGC-------------------------- 261
           + ++   ++I     +GRLV  ++    + R                             
Sbjct: 251 KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM 310

Query: 262 -EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV----------------------- 297
            E N+V  +A++  Y  CG ++ + ++FN +   SVV                       
Sbjct: 311 PEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFD 370

Query: 298 --------TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
                   T+++MI    + GL   +L+LF  M   GI+PN  + + VL  C+    +D 
Sbjct: 371 QMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDH 430

Query: 350 GIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           G + H   +  ++ +  D    + ++ M  + G L +A ++     V      ++W +++
Sbjct: 431 GREIHAQLVRSQFDL--DVYVASVLLSMYIKCGNLAKAKQVFDRFAVK---DVVMWNSII 485

Query: 409 SASRLHGRVDIAVEA 423
           +    HG   + VEA
Sbjct: 486 TGYAQHG---LGVEA 497



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 11  FTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLN 66
             L A  L R  +R          I  L  C  L +L     +H+++++S F  + +  +
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVAS 451

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L++ Y++      A+Q+FD     +VV + S++ GY   G    AL +F  M  + + P
Sbjct: 452 VLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP 511

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           ++ TF  V+ ACS   ++  G +I   +ET +  +  +   + +VD+ G+   ++ A  +
Sbjct: 512 DDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDL 571

Query: 186 FDLMGCR-NVVSWTSIIVA 203
            + M    + + W +++ A
Sbjct: 572 IEKMPMEADAIIWGALLGA 590


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 323/562 (57%), Gaps = 6/562 (1%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  +H+ +L++GF      L  L+   V +     ARQ+FDEM +P +  + +L  GY+ 
Sbjct: 27  LKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVR 86

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
              P  +LLL++KM    V P+EFT+  V+KA S L D   G  +H H+  +GF    +V
Sbjct: 87  NQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIV 146

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            + LV MY K  ++  A  +F+ M  +++V+W + +    Q      ALE F +    + 
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAV 206

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            + +   + S+++AC  LG L  G+  +    +   + N +V +A +DM+ KCG+   + 
Sbjct: 207 -QFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F  +   +VV++++MIVG A  G  R +L LF  M + G++PN VTF+GVL ACSH+G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 346 LVDEGIQHLDSMYRK--YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           LV+EG ++   M +     + P  +HY C+VD+LGR+G L+EAY+  K + V+PD G  +
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTG--I 383

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG LL A  +H  + +  + ++ L+E+   + + +V LSN YA AG+W+ V  +RS+M++
Sbjct: 384 WGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRK 443

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            G  K    S VE   + + F  G+    +   +   L E+ +K+++ GYV   T  VF 
Sbjct: 444 LGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYV-PDTCSVFH 502

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DVE E +E  +  HSE+LA+AFGLI    G  IR+MKNLR C DCH   K +S +   + 
Sbjct: 503 DVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEI 562

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           ++RD NRFHHFRNG CSC +FW
Sbjct: 563 IMRDKNRFHHFRNGVCSCKEFW 584


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/604 (34%), Positives = 330/604 (54%), Gaps = 49/604 (8%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL 99
           C  ++S   +  E+ K     +  T   +I  YVR      AR++F+ M+E    ++ ++
Sbjct: 205 CSAMVSARKLFDEMPKR----DELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAM 260

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
           ++GY++ G  Q AL L +KM    +  ++ T+ T+I AC+ +     GKQ+H +I     
Sbjct: 261 ISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNEL 320

Query: 160 QYN----LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH----------- 204
             N    L V ++L+ +Y K N VD AR++F  M  RN+++W +I+  +           
Sbjct: 321 NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKS 380

Query: 205 --------------------AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
                               AQN  G E L++F++      + P     A  + AC+ LG
Sbjct: 381 FFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE-PCDFAFAGALTACSVLG 439

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+  H  +V  G E +  V +A++ MYAKCG V  ++ VF  + +  +V++ SMI 
Sbjct: 440 ALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
              ++G G  +++LF++M+  G+ P+ +TF+ VL ACSH+GLV++G  + +SM   YGI 
Sbjct: 500 ALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P   HY  +VD+  R G    A  +  S+   P G P +W  LL+  R+HG +D+ +EA+
Sbjct: 560 PCEDHYARMVDLFCRAGMFSYARIVIDSMPSKP-GAP-VWEALLAGCRIHGNMDLGIEAA 617

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
            QL +   Q    YV LSN YA  G W  V  +R  M+   + KEP CSW+E+ ++ + F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 485 YAGNALFERGSEVLSLLRELER---KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
              + +     EVLS+ R LE+   +MK+ GY+   T  V  D+E E +E  +  HSE+L
Sbjct: 678 MVDDDVH---PEVLSVYRYLEQLGLEMKKLGYI-PDTKFVLHDMEYEQKEHALSTHSEKL 733

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+ FG++ +P G T+R+ KN+R+C DCH+ FK +S +  R+ +VRD  RFHHF+NG CSC
Sbjct: 734 AVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSC 793

Query: 602 GDFW 605
            D+W
Sbjct: 794 RDYW 797



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 209/510 (40%), Gaps = 117/510 (22%)

Query: 33  FIQQLQECKHL----ISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           + ++LQ C        SLA +VH+ ++ SGF      LN L+  Y +      ARQLF+E
Sbjct: 14  YAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEE 73

Query: 88  MLEPNVVSYTSLMAGYINMGQPQI---------------------------------ALL 114
           +  P+ ++ T+L+  Y  +G  ++                                 AL 
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSM-LADLITGKQIHTHIETFGFQ-YNLVVCSSLVDM 172
           LF+ M  +   P++FTF +V+ A  + + +     Q+H  +   G    +  V ++L+ +
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 173 YGK--------CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF---- 220
           Y K        C+ +  AR++FD M  R+ ++WT++I  + +N   + A E+F       
Sbjct: 194 YVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 221 ---------------NYQSRDRPNQHM-----------LASVINACASLGRLVSGKVAHG 254
                           +Q      + M             ++I+ACA++G    GK  H 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHA 313

Query: 255 VVVRSGCEFND----VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY----------- 299
            ++++    N      V++AL+ +Y K   V+ + K+F  +   +++T+           
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 300 --------------------TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
                               T MI G A+ G G   L LF +M   G +P D  F G L 
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALT 433

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACS  G ++ G Q L +     G          ++ M  + G ++ A  +  ++   P  
Sbjct: 434 ACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM---PSV 489

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             + W ++++A   HG    A+E  +Q+++
Sbjct: 490 DLVSWNSMIAALGQHGHGVKAIELFDQMLK 519


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 318/563 (56%), Gaps = 10/563 (1%)

Query: 49  VHSEILKSG--FLSNTFTLNHLINCYVRLKKTQVARQLF--DEMLEPNVVSYTSLMAGYI 104
           +H  +L+S    L N      LI  Y    +   AR++F  D+   P    + ++  GY 
Sbjct: 92  LHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYS 151

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNL 163
             G    ALLL++ ML   V P  F F+  +KACS L + + G+ IH  I      + + 
Sbjct: 152 RNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQ 211

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           VV ++L+ +Y +    D   +VF+ M  RNVVSW ++I   A   +  E L  FR    +
Sbjct: 212 VVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQRE 271

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
                +   L +++  CA +  L SGK  HG +++S    +  + ++L+DMYAKCG + Y
Sbjct: 272 GMGF-SWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGY 330

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
            +KVF+R+ +  + ++ +M+ G +  G    +L LF+EMI  GI+PN +TFV +L  CSH
Sbjct: 331 CEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSH 390

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           SGL  EG +   ++ + +G+ P  +HY C+VD+LGR+G+ DEA  +A++I + P G   +
Sbjct: 391 SGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGS--I 448

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG+LL++ RL+G V +A   + +L E        YV LSN YA AG WE+V  +R  M  
Sbjct: 449 WGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMAL 508

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
           TG+ K+ GCSW++I+ + + F AG +  F   +E   +  EL   +K  GYV   TG+V 
Sbjct: 509 TGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYV-PNTGVVL 567

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+ +E +   V  HSERLA  F LI+   G+ IRI KNLR+C DCH   K +S +  R 
Sbjct: 568 HDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRL 627

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            V+RD NRFHHF NGSCSC D+W
Sbjct: 628 IVLRDTNRFHHFENGSCSCKDYW 650


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 328/558 (58%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS I K GF +N F    L++ Y +      A ++FD+M E N+VS+ S++ G+ +   
Sbjct: 267 LHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 326

Query: 109 PQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
              A+ +F+ +L    V PNE + ++V+ AC+ +  L  G+Q+H  +  +G      V +
Sbjct: 327 YDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMN 386

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+DMY KC   D   ++F  +G R+VV+W  +++   QN +  EA   F     +    
Sbjct: 387 SLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREG-IL 445

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P++   ++V+++ ASL  L  G   H  +++ G   N  +  +L+ MYAKCGS+  + +V
Sbjct: 446 PDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQV 505

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  I + +V+++T+MI     +G     ++LF  M+S GI+P+ VTFV VL ACSH+G V
Sbjct: 506 FEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRV 565

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG+ H +SM + + + P  +HY C+VD+LGR G LDEA +  +S+ + P   P +WG L
Sbjct: 566 EEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPT--PSVWGAL 623

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R +G + +  EA+ +L E        YV L+N    +G  E  + +R  M   G+ 
Sbjct: 624 LGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVR 683

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPGCSW+++++ T+ F A +       E+  +L +LE+ +K++GYV  +T  V   +E+
Sbjct: 684 KEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYV-AETEFVTNHLEE 742

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
              E+ +  HSE+LALAFGL+++P    IRI KNLR C  CH V KL S I +R+ +VRD
Sbjct: 743 NEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRD 802

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFH F +G CSCGD+W
Sbjct: 803 INRFHRFADGFCSCGDYW 820



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 209/400 (52%), Gaps = 13/400 (3%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE- 90
           H +    + + L     +H++I+ + + S  F  N+LIN Y +      A  LF      
Sbjct: 147 HLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHH 206

Query: 91  -PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
              +V++TSL+    +      AL LF +M  +  +PN+FTF++++ A +    ++ G+Q
Sbjct: 207 FKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQ 266

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H+ I   GF  N+ V ++LVDMY KC D+  A RVFD M  RN+VSW S+IV    N  
Sbjct: 267 LHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 326

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
              A+ +F++   +    PN+  ++SV++ACA++G L  G+  HGVVV+ G      V +
Sbjct: 327 YDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMN 386

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+DMY KC   +   K+F  + +  VVT+  +++G  +      + + F  M   GI P
Sbjct: 387 SLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILP 446

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ++ +F  VLH+ +    + +G    D +  K G + +      ++ M  + G L +AY++
Sbjct: 447 DEASFSTVLHSSASLAALHQGTAIHDQII-KLGYVKNMCILGSLITMYAKCGSLVDAYQV 505

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
            + I+   D   + W  ++SA +LHG        +NQ+IE
Sbjct: 506 FEGIE---DHNVISWTAMISAYQLHG-------CANQVIE 535



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 28/237 (11%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
            ++H +I+K G++ N   L  LI  Y +      A Q+F+ + + NV+S+T++++ Y   
Sbjct: 468 TAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLH 527

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM-------LADLITGKQIHTHIETFGF 159
           G     + LF+ ML   + P+  TF  V+ ACS        LA   + K+IH  +     
Sbjct: 528 GCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHD-MNPGPE 586

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQNAQGHEALE 215
            Y     + +VD+ G+   +D A+R  + M  +   S W +++ A   +     G EA E
Sbjct: 587 HY-----ACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAE 641

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV------AHGVVVRSGCEFNDV 266
             R F  +  +  N  +LA   N C   GRL            +GV    GC + DV
Sbjct: 642 --RLFEMEPYNPGNYVLLA---NMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDV 693



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 271 LVDMYAKCGSVNYSDKVFNRISN--PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           L+++YAKCG +N +  +F+   +   ++VT+TS+I   + + +   +L LFN+M   G  
Sbjct: 183 LINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPY 242

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN  TF  +L A + + +V  G Q L S+  K+G   +    T +VDM  +   +  A +
Sbjct: 243 PNQFTFSSILSASAATMMVLHG-QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVR 301

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           +   +   P+   + W +++     +   D AV     ++     + N
Sbjct: 302 VFDQM---PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPN 346


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/583 (35%), Positives = 334/583 (57%), Gaps = 29/583 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +++GF  +    N L+  Y +  +   AR++FD  +  N+V++ ++++GY + G 
Sbjct: 128 IHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGH 187

Query: 109 PQIALLLFQKMLGNLV-----WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-- 161
            + +LL+F++M           P+EFTFA+++KAC  L     G Q+H  +   G     
Sbjct: 188 GRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTAS 247

Query: 162 NLVVCSSLVDMYGKCNDV-DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
           N ++  +L+DMY KC  +   A +VF+ +  +N + WT++IV HAQ  Q  EA+E+F  F
Sbjct: 248 NAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRF 307

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
            + S  R + H+L+SV+   A    +  G+  H   V++    +  VA++L+DMY KCG 
Sbjct: 308 -WSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGL 366

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
            + + + F  +   +VV++T+MI G  K+G G+ ++ +F EM + G++P++V ++ +L A
Sbjct: 367 TDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSA 426

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSHSGLV+E  ++  ++     + P A+HY C+VD+LGR G L EA  L  ++ + P  G
Sbjct: 427 CSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVG 486

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
             +W TLLSA R+H  V +  EA   L+  +      YV LSN +A AG+W     +R  
Sbjct: 487 --VWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGA 544

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFY-AGNALFERGSEVLSLLRELERKMKER-GYVGGKT 518
           M+R G+ K+ GCSWVE+  + + FY  G+    R +++  +LR++ER M+ER GY  G +
Sbjct: 545 MRRRGLRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTMRERLGYSPGSS 604

Query: 519 GL----VFVDVEDEAREEIVGLHSERLALAF------------GLISIPKGITIRIMKNL 562
                    DV++E+R E +  HSERLA+              G+    +   IR+ KNL
Sbjct: 605 SSSSEAALHDVDEESRAESLRAHSERLAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNL 664

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH+ FK +S +V R  VVRD NRFH F +G CSC D+W
Sbjct: 665 RVCGDCHEFFKGLSSVVGRVLVVRDANRFHRFEDGVCSCKDYW 707



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 215/413 (52%), Gaps = 15/413 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           A +H  +LK GF S+T   N+LI+ Y +  + ++A ++F  M E NVVS+T+LM G++  
Sbjct: 24  AQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRH 83

Query: 107 GQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           G  +  L L   M   + V PNEFT +  +KAC ++ D+  G  IH      GF+ + VV
Sbjct: 84  GDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVV 143

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +SLV +Y K   +  ARRVFD    RN+V+W ++I  +A    G ++L +FRE   + +
Sbjct: 144 ANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQ 203

Query: 226 D----RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF--NDVVASALVDMYAKCG 279
           +    +P++   AS++ AC SLG    G   H  +V  G     N ++A AL+DMY KC 
Sbjct: 204 EEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCR 263

Query: 280 S-VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
             +  + +VFNR+   + + +T++IVG A+ G  + +++LF    S G++ +      V+
Sbjct: 264 CLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVV 323

Query: 339 HACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
              +   LV++G Q H  ++    G+  D      ++DM  + G  DEA +  + +   P
Sbjct: 324 GVFADFALVEQGRQVHCYTVKTPAGL--DVSVANSLIDMYHKCGLTDEAARRFREV---P 378

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQL-IESNQQVANAYVTLSNTYALAG 449
               + W  +++    HG    A+    ++  E  +    AY+ L +  + +G
Sbjct: 379 ARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSG 431



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 18/338 (5%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            A +++A +  + +  G Q+H  +   GF  + ++ ++L+DMY KC ++  A  VF  M 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT+++V   ++    E L +       S   PN+  L++ + AC  +G + +G 
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG  VR+G E + VVA++LV +Y+K G +  + +VF+     ++VT+ +MI G A  G
Sbjct: 127 WIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAG 186

Query: 311 LGRFSLDLFNEMISR-----GIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGII 364
            GR SL +F EM  R       +P++ TF  +L AC   G   EG Q H   + R     
Sbjct: 187 HGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTA 246

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD---PDGGPLLWGTLLSASRLHGRVDIAV 421
            +A     ++DM  +   L     L  ++QV         + W T++      G+V  A+
Sbjct: 247 SNAILAGALLDMYVKCRCL-----LPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAM 301

Query: 422 EASNQL----IESNQQVANAYVTLSNTYALAGEWENVH 455
           E   +     + ++  V ++ V +   +AL  +   VH
Sbjct: 302 ELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVH 339



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           M+A ++ A A+   +  G   HG +++ G   + ++ + L+DMYAKCG +  + +VF  +
Sbjct: 6   MIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGM 65

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEG 350
              +VV++T+++VG  ++G  R  L L   M S   + PN+ T    L AC   G +  G
Sbjct: 66  PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAG 125

Query: 351 I 351
           +
Sbjct: 126 V 126


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 322/570 (56%), Gaps = 4/570 (0%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           LQ    L  L  VH+ I+ SG+  +   L  L+N           RQ+F  +  P+   +
Sbjct: 19  LQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLF 78

Query: 97  TSLMAGYINMGQPQI-ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           TSL+          I +L  + +M+ + V P+ +TF +VIK+C+ L+ L  G+ +H H+ 
Sbjct: 79  TSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVL 138

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             GF  ++ V ++LV +YGKC D+  AR+VFD +  R++V+W S+I  + QN    EA+ 
Sbjct: 139 VHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIG 198

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +F     ++   P+     SV++ACA LG    G   H  +V +G + N V+ ++L++MY
Sbjct: 199 LFDRMK-ETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMY 257

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
            +CG+V+ + +VF+ +   +VV +T+MI G    G G  +++LF+EM   G+ PN +TFV
Sbjct: 258 IRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFV 317

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            VL AC+H+GLV+EG +   S+  +Y ++P  +H  C+VDMLGR G LDEAY   K  ++
Sbjct: 318 AVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKE-EI 376

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
             +  P +   +L A ++H   D+  + +  L+ +  +    YV LSN YALAG  + V 
Sbjct: 377 PENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVE 436

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R+ M R  + K+ G S VE+  +TY F  G+      + +   L EL  K  E GYV 
Sbjct: 437 IVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVP 496

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
               ++    E+E    +   HSE+LA+AFGL+    G  IRI+KNLRMC DCH   K I
Sbjct: 497 VSDSVMHELEEEEREYAL-RYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFI 555

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S I  R+ +VRD  RFHHF+ GSCSC D+W
Sbjct: 556 SAISSREIIVRDKLRFHHFKVGSCSCLDYW 585



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 148/289 (51%), Gaps = 22/289 (7%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   ++ C  L +L     VH  +L  GF  + +    L+  Y +      AR++FD++ 
Sbjct: 114 FTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIR 173

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E ++V++ S+++GY   G  + A+ LF +M    V P+  TF +V+ AC+ L     G  
Sbjct: 174 ERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCW 233

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H +I   G   N+V+ +SL++MY +C +V  AR VFD M  RNVV+WT++I  +  N  
Sbjct: 234 VHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGY 293

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV-----VRSGCEFN 264
           G +A+E+F E   ++   PN     +V++ACA  G +  G+     +     +  G E N
Sbjct: 294 GSQAVELFHEMR-RNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHN 352

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRI-----SNPSVVTYTSMIVGAAK 308
                 LVDM  + G +   D+ +N I      NP+    T+M+ GA K
Sbjct: 353 ----VCLVDMLGRAGLL---DEAYNFIKEEIPENPAPAILTAML-GACK 393


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 331/560 (59%), Gaps = 19/560 (3%)

Query: 61   NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
            +T + N +++ Y+++   Q +  LF ++   +  S+ +++ G +  G  ++AL L  KM+
Sbjct: 453  DTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMV 512

Query: 121  GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                  N+ TF+  +   S L+ L  GKQIHT +   G   +  V +SL+DMY KC +++
Sbjct: 513  AAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEME 572

Query: 181  GARRVFDLM-----------GCRNVV----SWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             A  +F  +            C + V    SW+S++  + QN +  +AL+ F  F   S+
Sbjct: 573  KASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF-SFMICSQ 631

Query: 226  DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
               ++  L SV++ACAS G L  G+  HG + + G   +  + S+++DMY KCGS+N + 
Sbjct: 632  VEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAW 691

Query: 286  KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             +FN+  + +VV +TSMI G A +G GR ++ LF  MI+ GI PN+V+FVGVL ACSH+G
Sbjct: 692  LIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAG 751

Query: 346  LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            L++EG ++   M   YGI P A+H+TC+VD+ GR GRL+E  +   +  +       +W 
Sbjct: 752  LLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSS--VWR 809

Query: 406  TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            + LS+ R+H  +++ +    +L+E     A  Y+  S+  A    WE    +RS M++ G
Sbjct: 810  SFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRG 869

Query: 466  IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
            + K P  SW+++++Q ++F  G+    + +++ S L EL  ++KE GY    T  V  DV
Sbjct: 870  VKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTP-VMQDV 928

Query: 526  EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            E E R+ ++G HSE+LA+A+G+IS   G  IR+MKNLR+C DCH+  K  S+++ R+ ++
Sbjct: 929  EQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIII 988

Query: 586  RDVNRFHHFRNGSCSCGDFW 605
            RD++RFHHF++G CSC D+W
Sbjct: 989  RDIHRFHHFKHGHCSCADYW 1008



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 198/414 (47%), Gaps = 52/414 (12%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++++K+G +      NHL+N Y + +  + A ++F+E+ + +V S+T L++G+  +G 
Sbjct: 310 LHAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGL 367

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSM-LADLITGKQIHTHIETFGFQYNLVVCS 167
               L LF KM    V PN+FT + V+K+CS  + D   GK IH  I   G   + V+ +
Sbjct: 368 SADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNN 427

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           S++D Y KC     A ++F LM  ++ VSW  ++ ++ Q     +++++FR+   +    
Sbjct: 428 SILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAAS 487

Query: 228 PNQHMLASVINAC------------------------------ASLGRLVSGKVAHGVVV 257
            N  +   + N C                              +SL  L  GK  H  V+
Sbjct: 488 WNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVL 547

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS---------------VVTYTSM 302
           + G   +  V ++L+DMY KCG +  +  +F  +   S                V+++SM
Sbjct: 548 KVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSM 607

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           + G  + G    +L  F+ MI   ++ +  T   V+ AC+ +G+++ G Q +    +K G
Sbjct: 608 VSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQ-VHGYIQKIG 666

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
              D    + ++DM  + G L++A+ +    +   D   +LW +++S   LHG+
Sbjct: 667 HGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAK---DRNVVLWTSMISGCALHGQ 717



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  I K G   + F  + +I+ YV+      A  +F++  + NVV +TS+++G    GQ
Sbjct: 658 VHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQ 717

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCS 167
            + A+ LF+ M+   + PNE +F  V+ ACS    L  G K      E +G +      +
Sbjct: 718 GREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFT 777

Query: 168 SLVDMYGKCNDVD 180
            +VD+YG+   ++
Sbjct: 778 CMVDLYGRAGRLN 790



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +V H  ++++GC    +  + L+++YAK  ++  + K+F  I    V ++T +I G A+ 
Sbjct: 308 EVLHAKLIKNGCV--GIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARI 365

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           GL    L LF +M  +G+ PN  T   VL +CS
Sbjct: 366 GLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCS 398


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/547 (37%), Positives = 318/547 (58%), Gaps = 16/547 (2%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM-GQPQIALLLFQKMLG 121
           F  N L + Y +      A ++FD M   NVV++T+++A   +  G+ Q AL     M  
Sbjct: 105 FVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRR 164

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           + V PN +TF++V+ AC+    L     +H      G   ++ V SSL+D Y K  D+DG
Sbjct: 165 DGVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDG 221

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNYQSRDRPNQHMLASVIN 238
            RRVFD M  R++V W SII   AQ+  G  A+E+F   ++  + S    NQ  L SV+ 
Sbjct: 222 GRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSS----NQGTLTSVLR 277

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC  +  L +G+  H  V++   +   ++ +AL+DMY KCGS+  +D +F+R+    V++
Sbjct: 278 ACTGMVMLEAGRQVHAHVLKYDRDL--ILHNALLDMYCKCGSLEDADALFHRMPQRDVIS 335

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +++M+ G A+ G    +L +F+ M S+G+ PN VT VGVL ACSH+GLV++G  +  SM 
Sbjct: 336 WSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMK 395

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R +GI P+ +H+ C+VD+LGR G+LDEA +    + ++PD   ++W TLL A R+H    
Sbjct: 396 RLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDS--VIWRTLLGACRMHKNAS 453

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+ ++++       A V LSNTYA   +W +       M+  G+ KEPG SW+E+ 
Sbjct: 454 LAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELE 513

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
            + + F AG+        ++  L  L  ++K  GYV  +T  V  D+  E +E+++  HS
Sbjct: 514 KRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYV-PQTEFVLQDLPTEQKEDLLKYHS 572

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E++A+ FG +    G  IRIMKNLR+C DCH   KL+S    R  V+RD  RFHHF++G+
Sbjct: 573 EKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGA 632

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 633 CSCGDYW 639



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 3/217 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L  C     L +VH+  +K+G  S+ F  + LI+ YV+L      R++FDEM+  +
Sbjct: 174 FSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRD 233

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V + S++AG+   G    A+ LF +M       N+ T  +V++AC+ +  L  G+Q+H 
Sbjct: 234 LVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHA 293

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+    +  +L++ ++L+DMY KC  ++ A  +F  M  R+V+SW++++   AQN +  E
Sbjct: 294 HV--LKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVE 351

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           AL +F     Q    PN   +  V+ AC+  G +  G
Sbjct: 352 ALRVFDLMKSQGV-APNHVTMVGVLFACSHAGLVEDG 387



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 170/355 (47%), Gaps = 26/355 (7%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-----LVVCSSLVDMYGKCNDVDG 181
           +  +   ++K C        G+ IH H+E  G   +     L V +SL  MY K   +D 
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINA 239
           A R+FD M  RNVV+WT+++ A A +A G +  E  R      RD   PN +  +SV+ A
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALA-SADGRKQ-EALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C + G L +    H   V++G + +  V S+L+D Y K G ++   +VF+ +    +V +
Sbjct: 181 CTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVW 237

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            S+I G A+ G G  +++LF  M   G   N  T   VL AC+   +++ G Q + +   
Sbjct: 238 NSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQ-VHAHVL 296

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           KY    D   +  ++DM  + G L++A  L   +   P    + W T++S    +G+   
Sbjct: 297 KYD--RDLILHNALLDMYCKCGSLEDADALFHRM---PQRDVISWSTMVSGLAQNGK--- 348

Query: 420 AVEASNQL-IESNQQVANAYVTLSNTY---ALAGEWEN-VHSLRSEMKRTGIHKE 469
           +VEA     +  +Q VA  +VT+       + AG  E+  H  RS  +  GI  E
Sbjct: 349 SVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPE 403


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 327/557 (58%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+KSG        N+LIN Y + +    +R+ F++  + +  +++S+++ +     
Sbjct: 37  LHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNEL 96

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P ++L   +KM+   + P++    +  K+C +L+    GK +H      G+  ++ V SS
Sbjct: 97  PWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSS 156

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC ++  AR++FD M  RNVV+W+ ++  +AQ  +  EAL +F+E  +++    
Sbjct: 157 LVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENL-AV 215

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N +  ++VI+ CA+   L  G+   G+ ++S  + +  V S+LV +Y+KCG +  + +VF
Sbjct: 216 NDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVF 275

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   ++  + +M+   A++   +  ++LF  M   G+KPN +TF+ VL+ACSH+GLVD
Sbjct: 276 DEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 335

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG  + D M ++  I P  KHY  +VDMLGR G+L+EA ++  ++ +DP     +WG LL
Sbjct: 336 EGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTES--VWGALL 392

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           ++  +H   ++A  A++++ E     +  +++LSN YA  G +E+    R  ++  G  K
Sbjct: 393 TSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKK 452

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           E G SWVE R++ + F AG    ER  E+   L EL  +M++ GYV   T  V  +V+ +
Sbjct: 453 ETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYV-ADTSYVLREVDGD 511

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            + + +  HSERLA+AFGLI+ P    IR+MKNLR+C DCH+  K +S    R  +VRD 
Sbjct: 512 EKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDN 571

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH F +G CSC D+W
Sbjct: 572 NRFHRFEDGKCSCNDYW 588



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   +K+G+ ++ F  + L++ Y +  +   AR++FDEM   NVV+++ +M GY  MG
Sbjct: 137 SVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMG 196

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + AL LF++ L   +  N+++F+TVI  C+    L  G+QI        F  +  V S
Sbjct: 197 ENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGS 256

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SLV +Y KC D++GA +VFD +  RN+  W +++ A AQ++   + +E+F+     S  +
Sbjct: 257 SLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKL-SGMK 315

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS-DK 286
           PN     +V+NAC+  G +  GK    ++  S  E  D   ++LVDM  + G +  + + 
Sbjct: 316 PNFITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEI 375

Query: 287 VFNRISNPSVVTYTSMIV 304
           V N   +P+   + +++ 
Sbjct: 376 VTNMPIDPTESVWGALLT 393



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N + +  ++ + A    +V G   HG +V+SG     +VA+ L++ Y+K      S + F
Sbjct: 14  NYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAF 73

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
                 S  T++S+I   A+  L   SL+   +M++  ++P+D        +C      D
Sbjct: 74  EDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCD 133

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            G + +  +  K G   D    + +VDM  + G +  A K+
Sbjct: 134 IG-KSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKM 173


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 332/569 (58%), Gaps = 15/569 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +++GF  +    N L+  Y + + T  AR++FD +   N+ ++ S+++GY + GQ
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 109 PQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVV 165
            + +LL+F++M   +   P+EFTFA+++KACS L     G Q+H  +   G     N ++
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 244

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             +L+D+Y KC+ +  A +VFD +  RN + WT++IV HAQ  Q  EA+ +FR F + S 
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRF-WSSG 303

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            R + H+L+SV+   A    +  GK  H    ++    +  VA++LVDMY KCG    + 
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAG 363

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           + F  +   +VV++T+MI G  K+G GR ++DLF EM + G++ ++V ++ +L ACSHSG
Sbjct: 364 RRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSG 423

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LVDE  ++   + +   + P A+HY C+VD+LGR G L EA +L  S+ ++P  G  +W 
Sbjct: 424 LVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG--VWQ 481

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           TLLSA R+H  V +  E  + L+  +      YV LSN  A AGEW     +R  M+R G
Sbjct: 482 TLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKG 541

Query: 466 IHKEPGCSWVEIRDQTYAFY-AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           + K+ GCSW E+  + + FY  G+    +  ++   LRE+E +M+ER    G       D
Sbjct: 542 LRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHD 601

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGI--------TIRIMKNLRMCRDCHDVFKLIS 576
           V++E+R E +  HSERLA+   L+    G          +R+ KNLR+C DCH+  K +S
Sbjct: 602 VDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLS 661

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +V R  VVRD NRFH F+NG+CSC D+W
Sbjct: 662 AVVRRVVVVRDANRFHRFQNGACSCRDYW 690



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/444 (29%), Positives = 220/444 (49%), Gaps = 37/444 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++K GF S+T   N+LI+ Y +  K  +A ++FD M E NVVS+T+LM G+++ G+
Sbjct: 26  LHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGE 85

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L LF +M G+   PNEFT +  +KAC        G QIH      GF+ + VV +S
Sbjct: 86  ARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVVANS 143

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY K      ARRVFD++  RN+ +W S+I  +A   QG ++L +FRE   +  ++P
Sbjct: 144 LVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQP 203

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCE--FNDVVASALVDMYAKCGSVNYSDK 286
           ++   AS++ AC+ LG    G   H  +   G     N ++A AL+D+Y KC  +  + +
Sbjct: 204 DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQ 263

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   + + +T++IVG A+ G  + ++ LF    S G++ +      V+   +   L
Sbjct: 264 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFAL 323

Query: 347 VDEGIQ------------------HLDSMYRKYGIIPDAKH------------YTCVVDM 376
           V++G Q                   L  MY K G+  +A              +T +++ 
Sbjct: 324 VEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMING 383

Query: 377 LGRTGRLDEAYKLAKSIQVDP-DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +G+ G   EA  L + +Q +  +   + +  LLSA    G VD      +++ +  +   
Sbjct: 384 VGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRP 443

Query: 436 NA--YVTLSNTYALAGEWENVHSL 457
            A  Y  + +    AGE      L
Sbjct: 444 KAEHYACMVDLLGRAGELREAKEL 467



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 168/331 (50%), Gaps = 12/331 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            A +++A +  + L  G Q+H  +   GF  + ++ ++L+DMY KC  +  A  VFD M 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT+++V    + +  E L +F E    S   PN+  L++ + AC    R  +G 
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMR-GSGTSPNEFTLSATLKACGGGTR--AGV 123

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HGV VR+G E +DVVA++LV MY+K      + +VF+ I + ++ T+ SMI G A  G
Sbjct: 124 QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 311 LGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAK 368
            GR SL +F EM  R   +P++ TF  +L ACS  G   EG Q H     R      +A 
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL- 427
               ++D+  +  RL  A ++   ++       + W T++      G+V  A+    +  
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERR---NAIQWTTVIVGHAQEGQVKEAMCLFRRFW 300

Query: 428 ---IESNQQVANAYVTLSNTYALAGEWENVH 455
              + ++  V ++ V +   +AL  + + VH
Sbjct: 301 SSGVRADGHVLSSVVAVFADFALVEQGKQVH 331



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           + M+A ++ A A    L  G   H  +++ G   + ++ + L+DMYAKCG ++ + +VF+
Sbjct: 4   RRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFD 63

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +   +VV++T+++VG   +G  R  L LF EM   G  PN+ T    L AC   G    
Sbjct: 64  GMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC--GGGTRA 121

Query: 350 GIQ 352
           G+Q
Sbjct: 122 GVQ 124


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/642 (34%), Positives = 342/642 (53%), Gaps = 74/642 (11%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTL---NHLINCYVRLKKT-QVARQLFDE 87
           H +    +CK L ++  + + I K+    N++ L     L++C V L  +   AR+LF +
Sbjct: 7   HCLALFSKCKSLRTVKQIQALIFKTCL--NSYPLVSGKLLLHCAVTLPDSLHYARRLFLD 64

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLIT 146
           +  P+V  Y +L+ G  +   P  AL LF +M   ++  P+ F+FA ++KA +    L  
Sbjct: 65  IRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTN 124

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYG-------------------------------K 175
           G Q+H     +G   +L V ++L+ MY                                +
Sbjct: 125 GLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFR 184

Query: 176 CNDVDGARRVFDLMGCRNV-------------------------------VSWTSIIVAH 204
           C  V  A +VF  M  RN+                               VSW+++IV  
Sbjct: 185 CEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGF 244

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           A N   ++A   FRE   +   RPN+  L  V++ACA  G    G++ HG V +SG    
Sbjct: 245 AHNGNFNDAFAFFREVRREGM-RPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI 303

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
             V +AL+D Y+KCG+++ +  VF+ +   S V++T+MI G A +G G  ++ LFNEM  
Sbjct: 304 ISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEE 363

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
             IKP+ +TF+ +L+ACSH+GLVD G  +   M   YGI P  +HY C+VD+ GR G+L 
Sbjct: 364 SNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQ 423

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           +AY     + + P+   ++W TLL A  +HG + +A +   QL E + + +  +V LSN 
Sbjct: 424 QAYDFVCQMPISPND--IVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNI 481

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
           YA+AG+W++V +LR  M    + K PG S +E+    Y+F AG    +   E    LRE+
Sbjct: 482 YAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREI 541

Query: 505 ERKMK-ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
             +++ E GYV  + G V  D+E E +E+ V  HSE+LA+AFG+  +P+G  IR++KNLR
Sbjct: 542 MSRLRIEGGYVP-EVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLR 600

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +CRDCH V KLIS + E + VVRD +RFH F +GSCSC D+W
Sbjct: 601 ICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 152/377 (40%), Gaps = 96/377 (25%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           A  ++    C+ L +   +H   +  G  S+ F    LI+ Y        AR++FDEM+E
Sbjct: 110 AFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIE 169

Query: 91  PNVVSYTS-------------------------------LMAGYINMGQPQIALLLFQKM 119
           PN+V++ +                               ++AGY   G+ Q+A  +F KM
Sbjct: 170 PNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKM 229

Query: 120 L--GNLVW-----------------------------PNEFTFATVIKACSMLADLITGK 148
               ++ W                             PNE +   V+ AC+       G+
Sbjct: 230 PLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGR 289

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +H  +E  GF   + V ++L+D Y KC ++D AR VFD M  R+ VSWT++I   A + 
Sbjct: 290 ILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHG 349

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
            G EA+ +F E   +S  +P+     S++ AC           +H  +V  GC +     
Sbjct: 350 YGEEAIRLFNEME-ESNIKPDSITFISILYAC-----------SHAGLVDLGCSY----F 393

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           S +V+ Y                  P +  Y  M+    + G  + + D   +M    I 
Sbjct: 394 SRMVNTYG---------------IEPVIEHYGCMVDLYGRAGKLQQAYDFVCQM---PIS 435

Query: 329 PNDVTFVGVLHACSHSG 345
           PND+ +  +L ACS  G
Sbjct: 436 PNDIVWRTLLGACSIHG 452


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 319/559 (57%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I+K G  +     +HLIN Y +      + Q+F +    +  +++S+++ +     
Sbjct: 42  LHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDL 101

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P ++L  F+ ML   V P++  F +  K+C +L+ L   K +H       +  ++ V SS
Sbjct: 102 PLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSS 161

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++DMY KC D+  A  VFD M  RNVVSW+ +I  + Q  +  E+L +F+ F  +  +  
Sbjct: 162 VIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEG 221

Query: 229 -NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   L+SV+  C     L  G++ HG+  ++  + +  VAS+L+ +Y+KCG V  +  V
Sbjct: 222 VNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDV 281

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGL 346
           F  ++  ++  + +M++  A++     + +LF++M S  G+K N +TF+ VL+ACSH+GL
Sbjct: 282 FEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGL 341

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V++G  + + M + YGI P  +HY+ +VD+LGR G+L++A KL + + ++P     +WG 
Sbjct: 342 VEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTES--VWGA 398

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL+  RLHG   +A   ++++ E     +  +V LSN YA AG WE     R  M+  GI
Sbjct: 399 LLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGI 458

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KE G SWVE  ++ + F AG+    +  E+   L EL  +M + GYV   T  V  +V+
Sbjct: 459 KKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVA-DTSFVLKEVD 517

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            E +   +  HSERLA+AFG I+ P G  IR+MKNLR+C DCH   K IS    R  +VR
Sbjct: 518 GEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVR 577

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH F +G C+CGD+W
Sbjct: 578 DNNRFHRFEDGKCTCGDYW 596


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 317/559 (56%), Gaps = 7/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH +++++GF S+ F    L++ Y +  +   A ++FD ML  +VV +T+++  Y    +
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL+LF+KM       +E T  +V  A   L D      +H +    GF  ++ V +S
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNS 273

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           +V MY KC +V+ AR VFD M  RN +SW S++  + QN +  +AL +F +      D P
Sbjct: 274 IVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD-P 332

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N      +++AC+ LG    G+  H  V+ S  + +  + +A++DMY KCG ++ + ++F
Sbjct: 333 NPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMF 392

Query: 289 N--RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           N   +    V ++  +I G   +G G+ +L+LF+ M   G++PND+TF  +L ACSH+GL
Sbjct: 393 NNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGL 452

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +DEG +    M  K  + P+ KHY C+VDMLGR G L+EA++L K I   P     +WG 
Sbjct: 453 IDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDE--VWGA 509

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+HG  ++   A+N L +   +    YV +SN YA + +W+ V  +R  MK  G+
Sbjct: 510 LLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGL 569

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K    S +E   + + F+  +       EV   +  L  +MK  GYV      V  DVE
Sbjct: 570 KKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVP-DLSCVLHDVE 628

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            E +E ++  HSE+LA+AFG++ + +G+ I++ KNLR+C DCH  FK IS I  R  +VR
Sbjct: 629 PEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVR 688

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF+ G CSCGD+W
Sbjct: 689 DGNRFHHFQGGRCSCGDYW 707



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 224/472 (47%), Gaps = 29/472 (6%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQL-QECKHLISLASVHSEILKSGFLSNT-FTLNHLINC 71
           A   L+  +K  +  +  HF   L Q C  L +L  +HS +   GFL +T   L  LI  
Sbjct: 8   ALHHLSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIIL 67

Query: 72  YVRLKKTQVARQLFDEML--------EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           Y +L     AR LFD            PN     +++  Y N G+   A+ L+  M    
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V  N FT+  V+K C+     + G+ +H  +   GF  +L V ++LVDMY KC ++  A 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            VFD M  R+VV WT++I  + Q  +  +AL +FR+   Q        + A  I+  +++
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKM--QEEGFLGDEITA--ISVASAV 243

Query: 244 GRLVSGKVA---HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           G+L  G++A   HG  V +G   +  V +++V MYAKCG+V  +  VF+R+   + +++ 
Sbjct: 244 GQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWN 303

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SM+ G  + G    +L LFN+M +    PN VT + ++ ACS+ G    G + L +    
Sbjct: 304 SMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG-RKLHNFVIS 362

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
             +  D      ++DM  + G LD A ++  + ++  +     W  L+S   +HG    A
Sbjct: 363 SKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELG-ERDVSSWNVLISGYGVHGHGKEA 421

Query: 421 VEASNQL----IESNQQVANAYVTLSNTYALAGEWENVH------SLRSEMK 462
           +E  +++    +E N     + ++  +   L  E           S+R EMK
Sbjct: 422 LELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMK 473



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   + +GF+ +    N ++  Y +    + AR +FD M E N +S+ S+++GY   G
Sbjct: 254 SVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNG 313

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P  AL LF +M  +   PN  T   ++ ACS L     G+++H  + +     +  + +
Sbjct: 314 RPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN 373

Query: 168 SLVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           +++DMY KC D+D A  +F+   +G R+V SW  +I  +  +  G EALE+F     +  
Sbjct: 374 AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGV 433

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           + PN     S+++AC+  G +  G+     + +          + +VDM  + G +N + 
Sbjct: 434 E-PNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAF 492

Query: 286 KVFNRI-SNPSVVTYTSMIVGAAKYG 310
           ++  +I S PS   + ++++    +G
Sbjct: 493 RLIKKIPSRPSDEVWGALLLACRIHG 518


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 318/545 (58%), Gaps = 21/545 (3%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
            ++I    R  +   AR +FDEM E NVV++T+++ GY    +  +A  LF+ M      
Sbjct: 176 TNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM------ 229

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGAR 183
           P +    T +   SML       +I    E F       ++ C++++  +G+  ++  AR
Sbjct: 230 PEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKAR 285

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           RVFDLM  R+  +W  +I A+ +     EAL++F +   Q   RP+   L S+++ CA+L
Sbjct: 286 RVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGV-RPSFPSLISILSVCATL 344

Query: 244 GRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
             L  G+  H  +VR  C+F+D   VAS L+ MY KCG +  +  VF+R S+  ++ + S
Sbjct: 345 ASLQYGRQVHAHLVR--CQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNS 402

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           +I G A +GLG  +L +F+EM S G  PN VT + +L ACS++G ++EG++  +SM  K+
Sbjct: 403 IISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKF 462

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            + P  +HY+C VDMLGR G++D+A +L +S+ + PD    +WG LL A + H R+D+A 
Sbjct: 463 CVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDA--TVWGALLGACKTHSRLDLAE 520

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            A+ +L E+    A  YV LS+  A   +W +V  +R  M+   + K PGCSW+E+  + 
Sbjct: 521 VAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKV 580

Query: 482 YAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
           + F  G        + +L +L + +  ++E GY       V  DV++E + + +  HSER
Sbjct: 581 HMFTRGGIKNHPEQAMILMMLEKTDGLLREAGY-SPDCSHVLHDVDEEEKVDSLSRHSER 639

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+A+GL+ +P+G+ IR+MKNLR+C DCH   KLIS + ER+ ++RD NRFHHF NG CS
Sbjct: 640 LAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECS 699

Query: 601 CGDFW 605
           C D+W
Sbjct: 700 CRDYW 704



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 23/295 (7%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N L++ Y++ +    AR +F+ M E NVVS+T+++ GY+  G    A  LF +M 
Sbjct: 78  NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP 137

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND-- 178
                 NE ++        M   LI   +I    + +       V +S   + G C +  
Sbjct: 138 ER----NEVSWTV------MFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGR 187

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD AR +FD M  RNVV+WT++I  + QN +   A ++F E   +  +     ML     
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLF-EVMPEKTEVSWTSML----- 241

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
               LG  +SG++              V+A +A++  + + G ++ + +VF+ + +    
Sbjct: 242 ----LGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           T+  MI    + G    +LDLF +M  +G++P+  + + +L  C+    +  G Q
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQ 352



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 13/262 (4%)

Query: 11  FTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLN 66
           F L A  L  Q ++          I  L  C  L SL     VH+ +++  F  + +  +
Sbjct: 311 FELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVAS 370

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L+  YV+  +   A+ +FD     +++ + S+++GY + G  + AL +F +M  +   P
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMP 430

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           N+ T   ++ ACS    L  G +I   +E+ F     +   S  VDM G+   VD A  +
Sbjct: 431 NKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMEL 490

Query: 186 FDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
            + M  + +   W +++ A   +++   A    ++      D    ++L S INA     
Sbjct: 491 IESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINA----S 546

Query: 245 RLVSGKVAHGVVVRSGCEFNDV 266
           R   G VA   VVR     N+V
Sbjct: 547 RSKWGDVA---VVRKNMRTNNV 565



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 145/339 (42%), Gaps = 60/339 (17%)

Query: 53  ILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           IL+  +L++T    +  I+   R+ K   AR+ FD +    + S+ S+++GY + G P+ 
Sbjct: 7   ILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKE 66

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           A  LF +M                                        + N+V  + LV 
Sbjct: 67  ARQLFDEM---------------------------------------SERNVVSWNGLVS 87

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
            Y K   +  AR VF+LM  RNVVSWT+++  + Q     EA  +F    ++  +R N+ 
Sbjct: 88  GYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLF----WRMPER-NEV 142

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA-LVDMYAKCGSVNYSDKVFNR 290
               +       GR+   +  + ++        DVVAS  ++    + G V+ +  +F+ 
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMM-----PVKDVVASTNMIGGLCREGRVDEARLIFDE 197

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +VVT+T+MI G  +      +  LF  M  +     +V++  +L   + SG +++ 
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDA 253

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            +  + M  K  I  +A     ++   G  G + +A ++
Sbjct: 254 EEFFEVMPMKPVIACNA-----MIVGFGEVGEISKARRV 287



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 59/296 (19%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           V CS  +    +   ++ AR+ FD +  + + SW SI+  +  N    EA ++F E +  
Sbjct: 18  VNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS-- 75

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
                                                 E N V  + LV  Y K   +  
Sbjct: 76  --------------------------------------ERNVVSWNGLVSGYIKNRMIVE 97

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  VF  +   +VV++T+M+ G  + G+   +  LF  M  R    N+V++  +      
Sbjct: 98  ARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMF----- 148

Query: 344 SGLVDEGIQHLDSMYRKYGIIP--DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
            GL+D+G   +D   + Y ++P  D    T ++  L R GR+DEA  +   ++   +   
Sbjct: 149 GGLIDDG--RIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR---ERNV 203

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
           + W T+++  R + RVD+A +    + E  +    ++ ++   Y L+G  E+    
Sbjct: 204 VTWTTMITGYRQNNRVDVARKLFEVMPEKTEV---SWTSMLLGYTLSGRIEDAEEF 256


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 332/569 (58%), Gaps = 15/569 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +++GF  +    N L+  Y + + T  AR++FD +   N+ ++ S+++GY + GQ
Sbjct: 321 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 380

Query: 109 PQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVV 165
            + +LL+F++M   +   P+EFTFA+++KACS L     G Q+H  +   G     N ++
Sbjct: 381 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 440

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             +L+D+Y KC+ +  A +VFD +  RN + WT++IV HAQ  Q  EA+ +FR F + S 
Sbjct: 441 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRF-WSSG 499

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            R + H+L+SV+   A    +  GK  H    ++    +  VA++LVDMY KCG    + 
Sbjct: 500 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAG 559

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           + F  +   +VV++T+MI G  K+G GR ++DLF EM + G++ ++V ++ +L ACSHSG
Sbjct: 560 RRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSG 619

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LVDE  ++   + +   + P A+HY C+VD+LGR G L EA +L  S+ ++P  G  +W 
Sbjct: 620 LVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG--VWQ 677

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           TLLSA R+H  V +  E  + L+  +      YV LSN  A AGEW     +R  M+R G
Sbjct: 678 TLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKG 737

Query: 466 IHKEPGCSWVEIRDQTYAFY-AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           + K+ GCSW E+  + + FY  G+    +  ++   LRE+E +M+ER    G       D
Sbjct: 738 LRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHD 797

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGI--------TIRIMKNLRMCRDCHDVFKLIS 576
           V++E+R E +  HSERLA+   L+    G          +R+ KNLR+C DCH+  K +S
Sbjct: 798 VDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLS 857

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +V R  VVRD NRFH F+NG+CSC D+W
Sbjct: 858 AVVRRVVVVRDANRFHRFQNGACSCRDYW 886



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/444 (29%), Positives = 220/444 (49%), Gaps = 37/444 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++K GF S+T   N+LI+ Y +  K  +A ++FD M E NVVS+T+LM G+++ G+
Sbjct: 222 LHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGE 281

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L LF +M G+   PNEFT +  +KAC        G QIH      GF+ + VV +S
Sbjct: 282 ARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVVANS 339

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY K      ARRVFD++  RN+ +W S+I  +A   QG ++L +FRE   +  ++P
Sbjct: 340 LVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQP 399

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCE--FNDVVASALVDMYAKCGSVNYSDK 286
           ++   AS++ AC+ LG    G   H  +   G     N ++A AL+D+Y KC  +  + +
Sbjct: 400 DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQ 459

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   + + +T++IVG A+ G  + ++ LF    S G++ +      V+   +   L
Sbjct: 460 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFAL 519

Query: 347 VDEGIQ------------------HLDSMYRKYGIIPDAKH------------YTCVVDM 376
           V++G Q                   L  MY K G+  +A              +T +++ 
Sbjct: 520 VEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMING 579

Query: 377 LGRTGRLDEAYKLAKSIQVDP-DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +G+ G   EA  L + +Q +  +   + +  LLSA    G VD      +++ +  +   
Sbjct: 580 VGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRP 639

Query: 436 NA--YVTLSNTYALAGEWENVHSL 457
            A  Y  + +    AGE      L
Sbjct: 640 KAEHYACMVDLLGRAGELREAKEL 663



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 172/343 (50%), Gaps = 12/343 (3%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           +LG L        A +++A +  + L  G Q+H  +   GF  + ++ ++L+DMY KC  
Sbjct: 191 LLGFLPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK 250

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  A  VFD M  RNVVSWT+++V    + +  E L +F E    S   PN+  L++ + 
Sbjct: 251 LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMR-GSGTSPNEFTLSATLK 309

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           AC    R  +G   HGV VR+G E +DVVA++LV MY+K      + +VF+ I + ++ T
Sbjct: 310 ACGGGTR--AGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLAT 367

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDS 356
           + SMI G A  G GR SL +F EM  R   +P++ TF  +L ACS  G   EG Q H   
Sbjct: 368 WNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAM 427

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
             R      +A     ++D+  +  RL  A ++   ++       + W T++      G+
Sbjct: 428 AVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERR---NAIQWTTVIVGHAQEGQ 484

Query: 417 VDIAVEASNQL----IESNQQVANAYVTLSNTYALAGEWENVH 455
           V  A+    +     + ++  V ++ V +   +AL  + + VH
Sbjct: 485 VKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVH 527


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/586 (34%), Positives = 327/586 (55%), Gaps = 47/586 (8%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEM----LEPNVVSYTSLMAGYINMGQPQIALLLF 116
           +  T + L+  Y R    +   ++  EM    +E N+VS+  +++G+   G  + A+++F
Sbjct: 181 DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMF 240

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK- 175
           QK+      P++ T ++V+ +      L  G+ IH ++   G   +  V S+++DMYGK 
Sbjct: 241 QKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKS 300

Query: 176 --------------------CND----------VDGARRVFDLMGCR----NVVSWTSII 201
                               CN           VD A  +F+L   +    NVVSWTSII
Sbjct: 301 GHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSII 360

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
              AQN +  EALE+FRE       +PN   + S++ AC ++  L  G+  HG  VR   
Sbjct: 361 AGCAQNGKDIEALELFREMQVAGV-KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL 419

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             N  V SAL+DMYAKCG +N S  VFN +   ++V + S++ G + +G  +  + +F  
Sbjct: 420 LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFES 479

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           ++   +KP+ ++F  +L AC   GL DEG ++   M  +YGI P  +HY+C+V++LGR G
Sbjct: 480 LMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +L EAY L K +  +PD    +WG LL++ RL   VD+A  A+ +L     +    YV L
Sbjct: 540 KLQEAYDLIKEMPFEPDS--CVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLL 597

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           SN YA  G W  V S+R++M+  G+ K PGCSW++++++ Y   AG+    +  ++   +
Sbjct: 598 SNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKM 657

Query: 502 RELERKMKERGYVGGKTGLVFV--DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
            E+ ++M++ G+   +  L F   DVE++ +E+++  HSE+LA+ FGL++ P G  ++++
Sbjct: 658 DEISKEMRKSGH---RPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVI 714

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+C DCH V K IS    R+  +RD NRFHHF++G CSCGDFW
Sbjct: 715 KNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 181/437 (41%), Gaps = 75/437 (17%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+ ILKSG  ++ +    LI  Y        A  +   + +P + S++SL+         
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             ++ +F +M  + + P+      + K C+ L+    GKQIH      G   +  V  S+
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 170 VDMYGKCNDVDGARRVFDLM------------------GC-----------------RNV 194
             MY +C  +  AR+VFD M                  GC                  N+
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSW  I+    ++    EA+ MF++ ++     P+Q  ++SV+ +      L  G++ HG
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGF-CPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---------------------- 292
            V++ G   +  V SA++DMY K G V     +FN+                        
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336

Query: 293 -------------NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
                          +VV++TS+I G A+ G    +L+LF EM   G+KPN VT   +L 
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           AC +   +  G +       +  ++ +    + ++DM  + GR++ +  +     + P  
Sbjct: 397 ACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIV---FNMMPTK 452

Query: 400 GPLLWGTLLSASRLHGR 416
             + W +L++   +HG+
Sbjct: 453 NLVCWNSLMNGFSMHGK 469



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 152/363 (41%), Gaps = 24/363 (6%)

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q H  I   G Q +  + + L+  Y   N  + A  V   +    + S++S+I A  +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              +++ +F    +     P+ H+L ++   CA L     GK  H V   SG + +  V 
Sbjct: 96  LFTQSIGVFSRM-FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
            ++  MY +CG +  + KVF+R+S+  VVT ++++   A+ G     + + +EM S GI+
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT-----GRL 383
            N V++ G+L   + SG   E +     ++   G  PD    + V+  +G +     GRL
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHH-LGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT-LS 442
              Y + + +  D      +   ++      G V   +   NQ       V NAY+T LS
Sbjct: 274 IHGYVIKQGLLKD----KCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLS 329

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
               +    E     + +     +      SW  I        AG A   +  E L L R
Sbjct: 330 RNGLVDKALEMFELFKEQTMELNV-----VSWTSI-------IAGCAQNGKDIEALELFR 377

Query: 503 ELE 505
           E++
Sbjct: 378 EMQ 380



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 36/231 (15%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVR---------------------------------- 74
           +H  ++K G L +   ++ +I+ Y +                                  
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 75  LKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           + K     +LF E  +E NVVS+TS++AG    G+   AL LF++M    V PN  T  +
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           ++ AC  +A L  G+  H          N+ V S+L+DMY KC  ++ ++ VF++M  +N
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +V W S++   + + +  E + +F     ++R +P+     S+++AC  +G
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESL-MRTRLKPDFISFTSLLSACGQVG 503



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C ++ +L    S H   ++   L N    + LI+ Y +  +  +++ +F+ M   N+
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHT 152
           V + SLM G+   G+ +  + +F+ ++   + P+  +F +++ AC  +     G K    
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
             E +G +  L   S +V++ G+   +  A   +DL+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEA---YDLI 548


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 326/570 (57%), Gaps = 9/570 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           +  C  + +   +H+ + KS    + F  + L+ CY +L   + A +LFD+M   ++VS+
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSW 108

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
            SL++G+       ++L  F  M   + V PNE T  ++I AC+   D   GK IH    
Sbjct: 109 NSLISGFSRC--LHMSLTAFYTMKFEMSVKPNEVTILSMISACNGALD--AGKYIHGFGI 164

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G    + V +SL++MYGK  D+  A R+F+ +   N VSW SII A   N    E ++
Sbjct: 165 KVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGID 224

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
            F +      ++    +LA ++ AC  LG     +  HG++  +G      +A+AL+D Y
Sbjct: 225 YFNKMRRLGIEQDEGTILA-LLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTY 283

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           AK G ++ S  VF  +     V +T+M+ G A +GLGR ++ LF  M ++G++P+ VTF 
Sbjct: 284 AKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFT 343

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            +L ACSHSGLV+EG  + + M   YGI P   HY+C+VD+LGR G L++AY++ +++ +
Sbjct: 344 HLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
           +P+ G  +WG LL A R+HG +++  E +  LI         Y+ LSN Y+ +  W++  
Sbjct: 404 EPNAG--VWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R+ +K  G+ + PG S +E  ++ + F+ G+       ++ S L EL  K+++ GY  
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGY-S 520

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
            KT  V  DVE+E +E+++  HSE+LA+AFGL+   +G  + I KNLR+C DCH   KLI
Sbjct: 521 SKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLI 580

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S I +R  ++RD  RFHHF +G CSC D+W
Sbjct: 581 SLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 331/569 (58%), Gaps = 15/569 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +++GF  +    N L+  Y + + T  AR++FD +   N+ ++ S+++GY + GQ
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 109 PQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVV 165
            + +LL+F++M   +   P+EFTFA+++KACS L     G Q+H  +   G     N ++
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 244

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
             +L+D+Y KC+ +  A +VFD +  RN + WT++IV HAQ  Q  EA+ +FR F + S 
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRF-WSSG 303

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            R + H+L+SV+   A    +  GK  H    ++    +  VA++LVDMY KCG    + 
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAG 363

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           + F  +   +VV++T+MI G  K+G GR ++DLF EM   G++ ++V ++ +L ACSHSG
Sbjct: 364 RRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSG 423

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LVDE  ++   + +   + P A+HY C+VD+LGR G L EA +L  S+ ++P  G  +W 
Sbjct: 424 LVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG--VWQ 481

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           TLLSA R+H  V +  E  + L+  +      YV LSN  A AGEW     +R  M+R G
Sbjct: 482 TLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKG 541

Query: 466 IHKEPGCSWVEIRDQTYAFY-AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           + K+ GCSW E+  + + FY  G+    +  ++   LRE+E +M+ER    G       D
Sbjct: 542 LRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHD 601

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGI--------TIRIMKNLRMCRDCHDVFKLIS 576
           V++E+R E +  HSERLA+   L+    G          +R+ KNLR+C DCH+  K +S
Sbjct: 602 VDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLS 661

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +V R  VVRD NRFH F+NG+CSC D+W
Sbjct: 662 AVVRRVVVVRDANRFHRFQNGACSCRDYW 690



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 215/408 (52%), Gaps = 17/408 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++K GF S+T   N+LI+ Y +  K  +A ++FD M E NVVS+T+LM G+++ G+
Sbjct: 26  LHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGE 85

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            +  L LF +M G+   PNEFT +  +KAC        G QIH      GF+ + VV +S
Sbjct: 86  ARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVVANS 143

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MY K      ARRVFD++  RN+ +W S+I  +A   QG ++L +FRE   +  ++P
Sbjct: 144 LVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQP 203

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCE--FNDVVASALVDMYAKCGSVNYSDK 286
           ++   AS++ AC+ LG    G   H  +   G     N ++A AL+D+Y KC  +  + +
Sbjct: 204 DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQ 263

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   + + +T++IVG A+ G  + ++ LF    S G++ +      V+   +   L
Sbjct: 264 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFAL 323

Query: 347 VDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           V++G Q H  +     G+  D      +VDM  + G   EA +  + +   P    + W 
Sbjct: 324 VEQGKQVHCYTAKTPAGL--DVSVANSLVDMYLKCGLTGEAGRRFREM---PARNVVSWT 378

Query: 406 TLLSASRLHGR----VDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            +++    HG     +D+  E   + +E+++    AY+ L +  + +G
Sbjct: 379 AMINGVGKHGHGREAIDLFEEMQEEGVEADEV---AYLALLSACSHSG 423



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 168/331 (50%), Gaps = 12/331 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
            A +++A +  + L  G Q+H  +   GF  + ++ ++L+DMY KC  +  A  VFD M 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT+++V    + +  E L +F E    S   PN+  L++ + AC    R  +G 
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMR-GSGTSPNEFTLSATLKACGGGTR--AGV 123

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HGV VR+G E +DVVA++LV MY+K      + +VF+ I + ++ T+ SMI G A  G
Sbjct: 124 QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 311 LGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAK 368
            GR SL +F EM  R   +P++ TF  +L ACS  G   EG Q H     R      +A 
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL- 427
               ++D+  +  RL  A ++   ++       + W T++      G+V  A+    +  
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERR---NAIQWTTVIVGHAQEGQVKEAMCLFRRFW 300

Query: 428 ---IESNQQVANAYVTLSNTYALAGEWENVH 455
              + ++  V ++ V +   +AL  + + VH
Sbjct: 301 SSGVRADGHVLSSVVAVFADFALVEQGKQVH 331



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           + M+A ++ A A    L  G   H  +++ G   + ++ + L+DMYAKCG ++ + +VF+
Sbjct: 4   RRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFD 63

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +   +VV++T+++VG   +G  R  L LF EM   G  PN+ T    L AC   G    
Sbjct: 64  GMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC--GGGTRA 121

Query: 350 GIQ 352
           G+Q
Sbjct: 122 GVQ 124


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/605 (35%), Positives = 336/605 (55%), Gaps = 14/605 (2%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLIN 70
            T   + L   NK  S   +   +  L  C  L  LA +H+  +K+G  ++   +  L+ 
Sbjct: 6   LTATPAPLLPANKPKSAAPQHPLLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLT 65

Query: 71  CYVRLKKTQV----ARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIA-----LLLFQKML 120
                         ARQ+FD + +P + V Y +L+ GY        +     + +F +ML
Sbjct: 66  LCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRML 125

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V P+ +TF +++KAC+       G+Q H      G   +  V  +L++MY +C D  
Sbjct: 126 EEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDAR 185

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR  F       VVS+ ++I A  ++++  EAL +FRE   +  + P    + SV++AC
Sbjct: 186 AARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLN-PTPVTVISVLSAC 244

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A LG L  G+  H  V + G      V++ALVDMYAKCGS+  +  VF  + +     ++
Sbjct: 245 ALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWS 304

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            MIV  A +G GR ++ LF EM  +G+KP+D+TF+G+L+ACSHSGLV EG+++ D M + 
Sbjct: 305 VMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KD 363

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           +GI+P  KHY CV D+L R+G+L+ AYK    + ++P   P+LW TLLSA   HG V++ 
Sbjct: 364 HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPT--PILWRTLLSACGGHGDVELG 421

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
                +++E +      YV  SN  A  G WE ++ +R  M   G+ K PGCS +EI + 
Sbjct: 422 KRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNT 481

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F+AG+    +  E   ++ E+  ++K  GY+   + +  V++ +E +   +  HSE+
Sbjct: 482 VHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEK 541

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+AFGL++   G T+R++KNLR+C DCH + K +S +  R  ++RD+NRFHHF  G CS
Sbjct: 542 LAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICS 601

Query: 601 CGDFW 605
           CGD+W
Sbjct: 602 CGDYW 606


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/555 (35%), Positives = 320/555 (57%), Gaps = 7/555 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++++ +  N    N LI  Y+ +   + A  +F  M   +VVS+T++++G ++   
Sbjct: 258 LHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLL 317

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL  ++ M      P+E T A+V+ AC+ L  L  G ++H   E  G    +VV +S
Sbjct: 318 PDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANS 377

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  ++ A  +F  +  ++V+SWTS+I     N +  EAL  FR+   +S+  P
Sbjct: 378 LIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSK--P 435

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L S ++ACA +G L+ GK  H   +++G  F+  + +A++D+Y +CG +  +   F
Sbjct: 436 NSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF 495

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N ++   V  +  ++ G A+ G G   ++LF  M+   I P+DVTF+ +L ACS SG+V 
Sbjct: 496 N-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVT 554

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+++   M   Y I P+ KHY CVVD+LGR G+L+EA++  + + + PD  P +WG LL
Sbjct: 555 EGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPD--PAIWGALL 612

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H  V +   A+  + + + +    Y+ L N YA +G+W+ V  +R  MK  G+  
Sbjct: 613 NACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIV 672

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSWVE++ + +AF +G+    +  E+  +L     KMK  G+ G +     +D    
Sbjct: 673 DPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECS--SMDGIQT 730

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           ++ +I   HSER A+A+ LI+   G+ I + KNL MC+ CH   K IS IV R+  VRD 
Sbjct: 731 SKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDT 790

Query: 589 NRFHHFRNGSCSCGD 603
            +FHHF++G CSCGD
Sbjct: 791 EQFHHFKDGLCSCGD 805



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 193/371 (52%), Gaps = 11/371 (2%)

Query: 52  EILKSGFLSNTFTL------NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           E +    LS+  TL      N L++ +VR      A  +F  M E ++ S+  L+ GY  
Sbjct: 53  EYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTK 112

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    AL L+ ++L   + P+ +TF +V+++C+   DL+ G+++H H+  F F  ++ V
Sbjct: 113 AGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDV 172

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L+ MY KC DV  AR +FD M  R+ +SW ++I  + +N +  E LE+F      S 
Sbjct: 173 VNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSI 232

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           D P+   + SVI+AC  LG    G   H  VVR+  + N  V ++L+ MY   G    ++
Sbjct: 233 D-PDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAE 291

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            VF+ +    VV++T++I G     L   +L+ +  M   G  P++VT   VL AC+  G
Sbjct: 292 SVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +D G++ L  +  + G I        ++DM  +  R+++A ++   I   PD   + W 
Sbjct: 352 QLDMGMK-LHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQI---PDKDVISWT 407

Query: 406 TLLSASRLHGR 416
           ++++  R++ R
Sbjct: 408 SVINGLRINNR 418



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 205/401 (51%), Gaps = 10/401 (2%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C   + L     VH+ +++  F  +   +N LI  YV+      AR LFD+M 
Sbjct: 138 FPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMP 197

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             + +S+ ++++GY    +    L LF +M    + P+  T  +VI AC +L D   G Q
Sbjct: 198 TRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQ 257

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H+++    +  N+ V +SL+ MY        A  VF  M CR+VVSWT+II     N  
Sbjct: 258 LHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLL 317

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             +ALE ++     +   P++  +ASV++ACASLG+L  G   H +  R+G     VVA+
Sbjct: 318 PDKALETYKTMEI-TGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVAN 376

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+DMY+KC  +  + ++F++I +  V+++TS+I G         +L  F +MI +  KP
Sbjct: 377 SLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KP 435

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N VT +  L AC+  G +  G + + +   K G+  D      ++D+  R GR+  A  L
Sbjct: 436 NSVTLISALSACARVGALMCG-KEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTA--L 492

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            +    + D G   W  LL+     G+  + +E   +++ES
Sbjct: 493 NQFNLNEKDVGA--WNILLTGYAQKGKGAMVMELFKRMVES 531


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/642 (33%), Positives = 330/642 (51%), Gaps = 70/642 (10%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           + HFI  +     L  L  +H++I      SN+  +  LI+    LK    A  +F    
Sbjct: 40  ETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFD 99

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PN+  + +L+ G     + + ++  F  ML   + P+  T   V+K+ + L D+  G+ 
Sbjct: 100 HPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRC 159

Query: 150 IHTHIETFGFQYNLVVCSSLVDMY-----------------------------------G 174
           +H  +   G +++  V  SLVDMY                                    
Sbjct: 160 LHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCC 219

Query: 175 KCNDVDGARRVFDLMGCRNVVSW-------------------------------TSIIVA 203
           K  D+  A  +F+ M  RN  SW                               T++I  
Sbjct: 220 KVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMING 279

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            +QN    +AL MF     +   RPN   + S + AC  +G L  G+  H  +  +G + 
Sbjct: 280 FSQNGDHEKALSMFWRM-LEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQL 338

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           N  + +ALVDMYAKCG++  + +VF       ++T++ MI G A +G    +L  F +M 
Sbjct: 339 NRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMK 398

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           S GI P++V F+ +L ACSHSG VD+G+   +SM   Y I P  KHYT +VD+LGR GRL
Sbjct: 399 SAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRL 458

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           DEA    +S+ ++PD   ++WG L  A R H  +++A   + +L++   +   +YV LSN
Sbjct: 459 DEALSFIQSMPINPDF--VIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSN 516

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA  G WE+V  +R+ MK  G+ K+PG S++E+  Q ++F AG+    R  E+   L E
Sbjct: 517 VYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEE 576

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +    K+ GY+  +T  V  ++E+E +E+ +G HSE+LALAFGLIS   G TIRI+KNLR
Sbjct: 577 ITASAKQEGYM-PETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLR 635

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH + K  S +  R+ ++RD+ RFHHF++G+CSCGD+W
Sbjct: 636 VCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 310/560 (55%), Gaps = 11/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS  ++SG  SN      + N YV+    + A  +F++M E N V++T +M GY    +
Sbjct: 133 IHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAER 192

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF KM+   V  +E+ F+ V+KAC+ L +L  G+QIH HI   G +  + V + 
Sbjct: 193 QMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTP 252

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD Y KC++++ A + F+ +   N VSW+++I  + Q  +  EAL+ F     +S D  
Sbjct: 253 LVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVD-I 311

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S+  AC++L    SG  AH   ++S         SA++ MY++CG ++Y+ +VF
Sbjct: 312 NSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVF 371

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I +P  V +T++I G A  G    +L LF  M   G++PN VTF+ VL ACSHSGLV 
Sbjct: 372 ESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVI 431

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG Q+L+SM   YG+     HY C+VD+  R G L EA +L +S+   PD   + W  LL
Sbjct: 432 EGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDA--MSWKCLL 489

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
                +  ++I   A+  L + + +    Y+ + N YA  G+W+   ++R  M    + K
Sbjct: 490 GGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRK 549

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF-VDVED 527
           E  CSW+ ++ + + F  G+    +  E+ S L  L   +     +  +TGL+   DV +
Sbjct: 550 ELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSV-----IKEETGLLTEEDVSN 604

Query: 528 E--AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
               R+E + +HSERLALAFGLIS P    + + KNLR C+DCHD  K +S I  R+ VV
Sbjct: 605 SLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQVSLITGREIVV 664

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD  RFHHF+ G CSC D+W
Sbjct: 665 RDSFRFHHFKLGECSCNDYW 684



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 184/361 (50%), Gaps = 7/361 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F  N ++  Y +      AR++FDEM E N+VS+ ++++ Y   G       +F  ML  
Sbjct: 46  FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLEL 105

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
              PN  T+   +++    + L  GKQIH+H    G   N  V +++ +MY KC  ++GA
Sbjct: 106 ETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGA 165

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
             VF+ M  +N V+WT I+V + Q  +  +AL +F +   +  +  ++++ + V+ ACA 
Sbjct: 166 ELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVEL-DEYVFSIVLKACAG 224

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  G+  HG +V+ G E    V + LVD Y KC ++  + K F  IS P+ V+++++
Sbjct: 225 LEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSAL 284

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKY 361
           I G  + G    +L  F  + +R +  N  T+  +  ACS     + G Q H D++  K 
Sbjct: 285 ITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAI--KS 342

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            ++      + ++ M  R GRLD A ++ +SI  DPD   + W  +++     G    A+
Sbjct: 343 SLVAYQHGESAMITMYSRCGRLDYATRVFESID-DPDA--VAWTAIIAGYAYQGNAPEAL 399

Query: 422 E 422
           +
Sbjct: 400 K 400



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           +  AC  +  L  G++ H  + R+     + + ++++ MY KCGS+  + KVF+ +   +
Sbjct: 16  LFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERN 75

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           +V++ ++I   A+ G+      +F+ M+    KPN  T++G L +  +   ++ G Q + 
Sbjct: 76  LVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQ-IH 134

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           S   + G+  +A   T + +M  + G L+ A
Sbjct: 135 SHAIRSGLGSNASVNTAISNMYVKCGWLEGA 165


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 329/574 (57%), Gaps = 4/574 (0%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H +Q     +  I   + H++I++ G  ++T T N L+N Y +    + AR+LFDEM   
Sbjct: 52  HLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVR 111

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           ++VS+ +++  +   G  + AL+LF +M       +EFT ++V+ AC+    +   KQ+H
Sbjct: 112 SLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLH 171

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                     N+ V ++L+D+Y KC  V  A  VF+ M  R+ V+W+S++  + QN    
Sbjct: 172 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYE 231

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL +F        +  NQ  ++S ++ACA+   L+ GK    V  ++G   N  V S+L
Sbjct: 232 EALVLFHRAQAMGLEH-NQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSL 290

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAKCG +  +  VF+ +   +VV + +++ G +++     ++  F +M   GI PND
Sbjct: 291 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPND 350

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T++ VL ACSH GLV++G ++ D M R + + P+  HY+C+VD+LGR G L EA     
Sbjct: 351 ITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFID 410

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            +  D      +WG+LL++ R++  +++A  A+  L E     A  +V LSN YA    W
Sbjct: 411 RMPFDATAS--MWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRW 468

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           E V   R+ +K +   KE G SW+EI+ + ++F  G     R  E+   L +L  +MK+ 
Sbjct: 469 EEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKI 528

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY   KT     DVE+  ++E++  HSE+LAL FG++ +P G  IRIMKNLR+C DCH  
Sbjct: 529 GY-KAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSF 587

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KL S I ER+ +VRD NRFHHF+NG CSCG+FW
Sbjct: 588 MKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           QH+L S     A+    + G   H  ++R G   + + ++ L++MY+KCG V  + K+F+
Sbjct: 51  QHLLQSSARNRAA----IEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFD 106

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +   S+V++ +M+    + G    +L LF +M   G   ++ T   V+ AC+    V E
Sbjct: 107 EMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFE 166

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
             Q L     K  +  +    T ++D+  + G + +A  + + +   P+   + W ++++
Sbjct: 167 CKQ-LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECM---PERSDVTWSSMVA 222


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 319/558 (57%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H +++K GF +     +HLIN Y +      + +LFD     +  +++S+++ +     
Sbjct: 29  LHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDL 88

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL  F++ML + + P++ T  T  K+ + L+ L     +H         +++ V SS
Sbjct: 89  PLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSS 148

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-R 227
           LVD Y KC DV+ AR+VFD M  +NVVSW+ +I  ++Q     EAL +F+    Q  D R
Sbjct: 149 LVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIR 208

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N   L+SV+  C++      GK  HG+  ++  + +  VAS+L+ +Y+KCG V    KV
Sbjct: 209 VNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKV 268

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +   ++  + +M++  A++     + +LF EM   G+KPN +TF+ +L+ACSH+GLV
Sbjct: 269 FEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLV 328

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +H   + +++GI P ++HY  +VD+LGR G+L+EA  + K + + P     +WG L
Sbjct: 329 EKG-EHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTES--VWGAL 385

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L+  R+HG  ++A   ++++ E     +   V LSN YA AG WE     R  M+  GI 
Sbjct: 386 LTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIK 445

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KE G SWVE  ++ + F AG+    +  E+   L EL  +M + GYV   T  V  +V+ 
Sbjct: 446 KETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYV-ADTSFVLKEVDG 504

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + + + +  HSERLA+AFGLI+ P    IR+MKNLR+C DCH   K IS    R  +VRD
Sbjct: 505 DEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRD 564

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFH F +G C+CGD+W
Sbjct: 565 NNRFHRFEDGKCTCGDYW 582



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 155/335 (46%), Gaps = 18/335 (5%)

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
           L  G Q+H  +   GF+   +VC  L++ Y K N    + ++FD    ++  +W+S+I +
Sbjct: 23  LRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISS 82

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            AQN     AL  FR    +    P+ H L +   + A+L  L      H + +++    
Sbjct: 83  FAQNDLPLPALRFFRRM-LRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHH 141

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           +  V S+LVD YAKCG VN + KVF+ + + +VV+++ MI G ++ GL   +L+LF   +
Sbjct: 142 DVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRAL 201

Query: 324 SR--GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
            +   I+ ND T   VL  CS S L + G Q +  +  K          + ++ +  + G
Sbjct: 202 EQDYDIRVNDFTLSSVLRVCSASTLFELGKQ-VHGLCFKTSFDSSCFVASSLISLYSKCG 260

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA---NAY 438
            ++  YK+ + ++V   G   +W  +L A   H       E    L E  ++V    N  
Sbjct: 261 VVEGGYKVFEEVKVRNLG---MWNAMLIACAQHAHTGRTFE----LFEEMERVGVKPNFI 313

Query: 439 VTLSNTYAL--AGEWENVHSLRSEMKRTGIHKEPG 471
             L   YA   AG  E        MK  GI  EPG
Sbjct: 314 TFLCLLYACSHAGLVEKGEHCFGLMKEHGI--EPG 346


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/639 (33%), Positives = 332/639 (51%), Gaps = 74/639 (11%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-------- 88
           L+ C  L    ++H+    +G   + F  + L++ Y+R   T  AR + D M        
Sbjct: 30  LKSCSALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGW 89

Query: 89  ---------------------------LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
                                      +EPNV+++  L++G    G+ + A+L   +M G
Sbjct: 90  SALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG 149

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
               P+    +  + A   + D+  G+Q+H ++   G + +  V ++L+DMYGKC   D 
Sbjct: 150 EGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADE 209

Query: 182 ARRVFD------LMGCR-----------------------------NVVSWTSIIVAHAQ 206
             RVFD      +  C                              NVVSWTSI+    Q
Sbjct: 210 IVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQ 269

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N +  EA+++FRE   +  + PN   +  V+ A A++  L+ G+ AH   +R G   +  
Sbjct: 270 NGRDLEAVDLFREMQSEGIE-PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIY 328

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           V SALVDMYAKCG V  +  +F  +   +VV++ +MI G A +G    ++ LF  M S  
Sbjct: 329 VGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSK 388

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            KP+ VTF  VL ACS +G  +EG  + + M  K+GI P  +HY C+V +LGR G+LD+A
Sbjct: 389 EKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDA 448

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           Y +   +  +PDG   +WG+LL + R+HG V +A  A+  L +   + A  YV LSN YA
Sbjct: 449 YDIINQMPFEPDG--CIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYA 506

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
               W+ V+ LR  MK  G+ KE GCSW+EI+++ +   AG++     + +   L+ L  
Sbjct: 507 SKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTM 566

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +M+  G+    T  V  DVE++ +++I+ +HSE+LA+A GLIS   G  ++++KNLR+C 
Sbjct: 567 EMRRLGF-APSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICG 625

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH+  K IS    R+  VRD NRFHHF++G CSC D+W
Sbjct: 626 DCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 150/378 (39%), Gaps = 50/378 (13%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+     + +K+CS L                G   +  V SSL+  Y +      AR V
Sbjct: 21  PDPRLLPSALKSCSALRLARALHAAAA---VAGVSRDAFVASSLLHAYLRFGATADARSV 77

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEA---LEMFRE----------------FNYQSRD 226
            D M  R VV W+++I AHA +     A   LE  R                  N   R 
Sbjct: 78  LDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRA 137

Query: 227 R---------------PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           R               P+   ++  ++A   +G +  G+  HG VV++GC  +  VA+AL
Sbjct: 138 RDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATAL 197

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMY KCG  +   +VF+  S+  V +  +++ G ++      +L LF E + RGI+ N 
Sbjct: 198 IDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNV 257

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT-----GRLDEA 386
           V++  ++  C  +G   E +     M +  GI P++    CV+           GR    
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREM-QSEGIEPNSVTIPCVLPAFANIAALMHGRSAHC 316

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           + L K    D   G      L+      GRV  A      +   N    NA +     YA
Sbjct: 317 FSLRKGFHHDIYVG----SALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMI---GGYA 369

Query: 447 LAGEWENVHSLRSEMKRT 464
           + GE EN   L   M+ +
Sbjct: 370 MHGEAENAVRLFRSMQSS 387


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/591 (35%), Positives = 347/591 (58%), Gaps = 40/591 (6%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYI 104
           ++VH  ++K GF  +T   N +++ Y   K    A ++F+   + + +VVS+ SL++G+ 
Sbjct: 185 SAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFX 244

Query: 105 NMGQPQIALLLFQKMLG---NLVWPNEFTFATVIKACSMLADLITGKQIHTHIET----F 157
             G+ + AL  F+ M+    + V PN  T   ++K+C+ L  + T   +H +I +     
Sbjct: 245 LNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSL 304

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
               ++VV ++L+DM+ +C ++  AR +FD +  +NVV W+++I  + Q +   EAL +F
Sbjct: 305 LVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLF 364

Query: 218 REFNYQS-----RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           R+   +        +PN   L SVI AC+ LG   S  + H   V +G + +  +ASAL+
Sbjct: 365 RQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALI 424

Query: 273 DMYAKCGSVNYSDKVFNRI--SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           DM AKCG + +  +VF+ +  S  +VV+++SMI     +G G+ +L+LF+EM + G +PN
Sbjct: 425 DMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPN 484

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           ++T++ VL ACSH+GLV++G    +SM + YG+ P  KHY C+VD+LGR G LDEA+ + 
Sbjct: 485 EITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVI 544

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
            ++ +  D    LWG+LL+A  LHG   +      +++  +      +V L+N Y  AG 
Sbjct: 545 LNMPIKAD--LALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGR 602

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W++V  +R E++R+G+ K PG S++EI ++ Y+F A +        +   L  L+ ++++
Sbjct: 603 WDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRK 662

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGL------HSERLALAFGLISIPKGIT--------- 555
                 +TGL   +VED    +I GL      HSERLA+AFGLI I +  T         
Sbjct: 663 AAKYVTETGL---NVED---GDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTAT 716

Query: 556 -IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IRI KNLR+CRDCH   KL+S +++R+ +VRD +RFHHFR+G CSCGD+W
Sbjct: 717 PIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C   + L+    VH+ + + G  ++ F+   L++ Y +      A Q+FDEM 
Sbjct: 55  FPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMP 114

Query: 90  EP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE-------FTFATVIKACSM 140
           E   +VVS+T+L++ Y + G    A   F +M     W           +   ++ AC++
Sbjct: 115 EGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAV 174

Query: 141 LAD---LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVV 195
                 L  G  +H  +  +GF  +  + +S+V MY  C DV GA RVF+ +    R+VV
Sbjct: 175 GCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVV 234

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQ--SRDRPNQHMLASVINACASLGRLVSGKVAH 253
           SW S+I     N +   AL  F +   +  S   PN+  + +++ +CA LG + +    H
Sbjct: 235 SWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVH 294

Query: 254 GVVVRSGCEF----NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
             +           + VV +AL+DM+A+CG++  + ++F+ +   +VV +++MI G  + 
Sbjct: 295 EYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQG 354

Query: 310 GLGRFSLDLFNEMISRG------IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY-- 361
                +L LF +M+  G      +KPN VT V V+ ACS  G          SM  KY  
Sbjct: 355 SCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SMIHKYAV 409

Query: 362 --GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
             G+  DA+  + ++DM  + G ++   ++   +  +     + W +++ A  +HG    
Sbjct: 410 ATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD-ESTRTVVSWSSMIGAEGIHGEGKR 468

Query: 420 AVEASNQL 427
           A+E  +++
Sbjct: 469 ALELFSEM 476



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 19/306 (6%)

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            PQ AL  F +M  + V  N FTF  ++KAC+ L  L+   Q+H ++   G   +    +
Sbjct: 32  NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAA 91

Query: 168 SLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           +LVD YGKC     A +VFD M  G  +VVSWT++I A++ N    EA   F    +   
Sbjct: 92  ALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRG 151

Query: 226 DRPNQHM------LASVINACA---SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
              ++        L ++++ACA       L  G   HG+VV+ G   +  + +++V MY+
Sbjct: 152 WDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYS 211

Query: 277 KCGSVNYSDKVFN--RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG---IKPND 331
            C  V  + +VFN   I    VV++ S+I G    G    +L  F +M+S G   ++PN 
Sbjct: 212 ACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNR 271

Query: 332 VTFVGVLHACSHSGLVDEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           VT + +L +C+  G V+      +++ S +    +  D    T ++DM  R G L  A +
Sbjct: 272 VTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALARE 331

Query: 389 LAKSIQ 394
           +   ++
Sbjct: 332 IFDGVE 337


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/570 (35%), Positives = 342/570 (60%), Gaps = 11/570 (1%)

Query: 43  LISLASVHSEILKSGF-LSNTFTLNHLINCYVRLKKT---QVARQLFDEMLEP-NVVSYT 97
           L  L  +H+  +++G  +S+     HLI   V L        A ++F ++ +P NV  + 
Sbjct: 30  LTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89

Query: 98  SLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           +L+ GY  +G    A+ L+++M  +  V P+  T+  ++KA   +AD+  G+ IH+ +  
Sbjct: 90  TLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIR 149

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF   + V +SL+ +Y  C DV  A +VFD M  +++V+W S+I   A+N +  EAL +
Sbjct: 150 SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALAL 209

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           + E + +   +P+   + S+++ACA +G L  GK  H  +++ G   N   ++ L+D+YA
Sbjct: 210 YTEMDLKG-IKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFV 335
           +CG V  +  +F+ + + + V++TS+IVG A  GLG+ +++LF  M S+ G+ P ++TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFV 328

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
           G+L+ACSH G+V EG ++   M  +Y I P  +H+ C+VD+L R G++ +AY+    + +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPM 388

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455
            P+   ++W TLL A  +HG  D+A  A  ++++     +  YV LSN YA    W +V 
Sbjct: 389 QPN--VVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQ 446

Query: 456 SLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVG 515
            +R +M R G+ K PG S VE+ ++ + F  G+    +   + + L+E+  +++  GYV 
Sbjct: 447 KIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVP 506

Query: 516 GKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLI 575
             +  V+VDVE+E +E  +  HSE++A+AF LIS P+   IR++KNL++C DCH   KL+
Sbjct: 507 QISN-VYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLV 565

Query: 576 SDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           S +  R+ VVRD +RFHHF+NGSCSC D+W
Sbjct: 566 SKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 157/310 (50%), Gaps = 15/310 (4%)

Query: 12  TLAASSLTRQNKRS-----SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLN 66
           +++A SL R+ + S       HT    ++ + +   +    ++HS +++SGF S  +  N
Sbjct: 101 SVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQN 160

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L++ Y        A ++FD+M E ++V++ S++ G+   G+P+ AL L+ +M    + P
Sbjct: 161 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKP 220

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + FT  +++ AC+ +  L  GK+ H ++   G   NL   + L+D+Y +C  V+ A+ +F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  +N VSWTS+IV  A N  G EA+E+F+    +    P +     ++ AC+  G +
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMV 340

Query: 247 VSG-----KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS-DKVFNRISNPSVVTYT 300
             G     +++    +    E        +VD+ A+ G V  + + +      P+VV + 
Sbjct: 341 KEGFEYFRRMSEEYKIEPRIEH----FGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWR 396

Query: 301 SMIVGAAKYG 310
           +++     +G
Sbjct: 397 TLLGACTVHG 406


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/578 (34%), Positives = 329/578 (56%), Gaps = 8/578 (1%)

Query: 31  AHFIQQLQECK--HLISLASV-HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           A  +  L  C   HL+ L  V H   +K+GF+S T   N L++ Y      +   ++F  
Sbjct: 298 ATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRN 357

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M++ NVVS+T+++  Y   G       LFQ+M      P+ F   + + A +    L  G
Sbjct: 358 MVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHG 417

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           K +H +    G +  L V ++L++MY KC +++ A+ +FD +  ++++SW ++I  +++N
Sbjct: 418 KSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRN 477

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
              +EA  +F E   Q R  PN   +  ++ A ASL  L  G+  H   +R G   +D V
Sbjct: 478 NLANEAFSLFTEMLLQLR--PNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV 535

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           A+AL+DMY KCG++  + ++F+R+SN +++++T M+ G   +G GR ++ LF +M   GI
Sbjct: 536 ANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGI 595

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            P+  +F  +L+ACSHSGL DEG +  D+M +++ I P  KHYTC+VD+L  TG L EAY
Sbjct: 596 APDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAY 655

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +   S+ ++PD    +W +LL   R+H  V +A E + ++ E   +    YV L+N YA 
Sbjct: 656 EFIDSMPIEPDSS--IWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAE 713

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
           A  WE V  L++++   G+ +  GCSW+E + + + F A N    +G+ +   L E+ ++
Sbjct: 714 AERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKR 773

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           M+E G+   K     +  ++    E +  HS +LA+AFG++++ +G  IR+ KN R+C  
Sbjct: 774 MQEEGH-DPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSH 832

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH+  K IS +  R+ ++RD NRFHHF  G CSC  +W
Sbjct: 833 CHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 188/376 (50%), Gaps = 9/376 (2%)

Query: 68  LINCYVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
           L+  Y++    + AR++FDEM +  +V  +T+LM+GY   G  +  +LLF+KM    V P
Sbjct: 135 LVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRP 194

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + +T + V+K  + L  +  G+ +H  +E  GF     V ++L+  Y K N    A  VF
Sbjct: 195 DAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVF 254

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  R+V+SW S+I     N    +A+E+F     +  +  +  +L SV+ ACA L  L
Sbjct: 255 DGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLL-SVLPACAELHLL 313

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+V HG  V++G      +A+ L+DMY+ C     ++K+F  +   +VV++T+MI   
Sbjct: 314 FLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSY 373

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
            + GL      LF EM   G +P+       LHA + + L+  G + +     + G+   
Sbjct: 374 TRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHG-KSVHGYAIRNGMEKV 432

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
                 +++M  + G ++EA KL     V  D   + W TL+     + R ++A EA + 
Sbjct: 433 LAVTNALMEMYVKCGNMEEA-KLIFDGVVSKD--MISWNTLIGG---YSRNNLANEAFSL 486

Query: 427 LIESNQQVANAYVTLS 442
             E   Q+    VT++
Sbjct: 487 FTEMLLQLRPNAVTMT 502



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 189/379 (49%), Gaps = 6/379 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + K GF S     N L+  Y +  +T+ A  +FD M   +V+S+ S+++G  + G 
Sbjct: 218 VHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGL 277

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF +M       +  T  +V+ AC+ L  L  G+ +H +    GF     + + 
Sbjct: 278 YDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANV 337

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY  C+D     ++F  M  +NVVSWT++I ++ +     +   +F+E   +   RP
Sbjct: 338 LLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG-TRP 396

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   + S ++A A    L  GK  HG  +R+G E    V +AL++MY KCG++  +  +F
Sbjct: 397 DIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIF 456

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + + +  ++++ ++I G ++  L   +  LF EM+ + ++PN VT   +L A +    ++
Sbjct: 457 DGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLE 515

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G + + +   + G + D      ++DM  + G L  A +L   +    +   + W  ++
Sbjct: 516 RG-REMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLS---NKNLISWTIMV 571

Query: 409 SASRLHGRVDIAVEASNQL 427
           +   +HGR   A+    Q+
Sbjct: 572 AGYGMHGRGRDAIALFEQM 590



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 113/220 (51%), Gaps = 5/220 (2%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQ---YNLVVCSSLVDMYGKCNDVDGAR 183
           ++ ++  V++ CS +  L  GK+ H  +          + V+   LV MY KC D++ AR
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 184 RVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           RVFD M    +V  WT+++  +A+     E + +FR+  +    RP+ + ++ V+   A 
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM-HCCGVRPDAYTISCVLKCIAG 208

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           LG +  G+V HG++ + G      V +AL+  YAK      +  VF+ + +  V+++ SM
Sbjct: 209 LGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSM 268

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           I G    GL   +++LF  M   G + +  T + VL AC+
Sbjct: 269 ISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACA 308


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 307/518 (59%), Gaps = 10/518 (1%)

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           P+  S  +++  + +  +P++AL L ++   +L  P+  T+  +++AC+ L  L  G+ +
Sbjct: 88  PDPFSLNTVLRIFASSARPRVALALHRR---HLAPPDTHTYPPLLQACARLLALRYGEGL 144

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNA 208
           H      G    + V +SLV +YG C   + A RVFD +    RN+VSW S++   A N 
Sbjct: 145 HAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANG 204

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           + +E L +FRE   +    P+   + SV+ ACA +G L  G+  H  V + G   N    
Sbjct: 205 RPNEVLTVFREM-LEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAG 263

Query: 269 SALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           +AL+D+YAKCG V+ + K+F  +    +VV++TS+IVG A  G G  +L LF+ M    +
Sbjct: 264 NALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKL 323

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            P ++T VGVL+ACSH GLVD+G ++ D M  +YGI P  +H  C+VD+LGR GR++EA+
Sbjct: 324 MPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAH 383

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
               ++ ++P+   ++W TLL A  +H +++I   A  +L+E +   +  YV LSN YA 
Sbjct: 384 NYITTMPLEPNA--VVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAG 441

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            G W +VH LR  M   G+ K PG S VE+R+  Y F  G+       ++  +L ++  +
Sbjct: 442 VGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAER 501

Query: 508 MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
           ++ +GY+   T  V  D+EDE +E  +  HSERLA+AF L+    G  IRI+KNLR+C D
Sbjct: 502 LRRQGYIP-HTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGD 560

Query: 568 CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           CH   KLIS + +R+ +VRD +RFHHF+ G+CSC D+W
Sbjct: 561 CHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 27/294 (9%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   LQ C  L++L     +H+E  K+G +S  F  N L++ Y      + A ++FDE+ 
Sbjct: 125 YPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIP 184

Query: 90  EP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
            P  N+VS+ S++ G+   G+P   L +F++ML     P+ FT  +V+ AC+ +  L  G
Sbjct: 185 PPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALG 244

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQ 206
           +++H  +   G   N    ++L+D+Y KC  VD AR++F  MG  R VVSWTS+IV  A 
Sbjct: 245 RRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAV 304

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------KVAHGVVVRS 259
           N  G +AL++F     + +  P +  +  V+ AC+  G +  G       K  +G+  R 
Sbjct: 305 NGFGMDALQLFSMME-REKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRI 363

Query: 260 ---GCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKY 309
              GC         +VD+  + G V  +      +   P+ V + +++   A +
Sbjct: 364 EHLGC---------MVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMH 408


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/591 (35%), Positives = 347/591 (58%), Gaps = 40/591 (6%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYI 104
           ++VH  ++K GF  +T   N +++ Y   K    A ++F+   + + +VVS+ SL++G+ 
Sbjct: 185 SAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFT 244

Query: 105 NMGQPQIALLLFQKMLG---NLVWPNEFTFATVIKACSMLADLITGKQIHTHIET----F 157
             G+ + AL  F+ M+    + V PN  T   ++K+C+ L  + T   +H +I +     
Sbjct: 245 LNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSL 304

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
               ++VV ++L+DM+ +C ++  AR +FD +  +NVV W+++I  + Q +   EAL +F
Sbjct: 305 LVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLF 364

Query: 218 REFNYQS-----RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           R+   +        +PN   L SVI AC+ LG   S  + H   V +G + +  +ASAL+
Sbjct: 365 RQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALI 424

Query: 273 DMYAKCGSVNYSDKVFNRI--SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           DM AKCG + +  +VF+ +  S  +VV+++SMI     +G G+ +L+LF+EM + G +PN
Sbjct: 425 DMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPN 484

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
           ++T++ VL ACSH+GLV++G    +SM + YG+ P  KHY C+VD+LGR G LDEA+ + 
Sbjct: 485 EITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVI 544

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
            ++ +  D    LWG+LL+A  LHG   +      +++  +      +V L+N Y  AG 
Sbjct: 545 LNMPIKAD--LALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGR 602

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W++V  +R E++R+G+ K PG S++EI ++ Y+F A +        +   L  L+ ++++
Sbjct: 603 WDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRK 662

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGL------HSERLALAFGLISIPKGIT--------- 555
                 +TGL   +VED    +I GL      HSERLA+AFGLI I +  T         
Sbjct: 663 AAKYVTETGL---NVED---GDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTAT 716

Query: 556 -IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            IRI KNLR+CRDCH   KL+S +++R+ +VRD +RFHHFR+G CSCGD+W
Sbjct: 717 PIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C   + L+    VH+ + + G  ++ F+   L++ Y +      A Q+FDEM 
Sbjct: 55  FPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMP 114

Query: 90  EP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE-------FTFATVIKACSM 140
           E   +VVS+T+L++ Y + G    A   F +M     W           +   ++ AC++
Sbjct: 115 EGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAV 174

Query: 141 LAD---LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVV 195
                 L  G  +H  +  +GF  +  + +S+V MY  C DV GA RVF+ +    R+VV
Sbjct: 175 GCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVV 234

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQ--SRDRPNQHMLASVINACASLGRLVSGKVAH 253
           SW S+I     N +   AL  F +   +  S   PN+  + +++ +CA LG + +    H
Sbjct: 235 SWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVH 294

Query: 254 GVVVRSGCEF----NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
             +           + VV +AL+DM+A+CG++  + ++F+ +   +VV +++MI G  + 
Sbjct: 295 EYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQG 354

Query: 310 GLGRFSLDLFNEMISRG------IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY-- 361
                +L LF +M+  G      +KPN VT V V+ ACS  G          SM  KY  
Sbjct: 355 SCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SMIHKYAV 409

Query: 362 --GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
             G+  DA+  + ++DM  + G ++   ++   +  +     + W +++ A  +HG    
Sbjct: 410 ATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD-ESTRTVVSWSSMIGAEGIHGEGKR 468

Query: 420 AVEASNQL 427
           A+E  +++
Sbjct: 469 ALELFSEM 476



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 19/306 (6%)

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            PQ AL  F +M  + V  N FTF  ++KAC+ L  L+   Q+H ++   G   +    +
Sbjct: 32  NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAA 91

Query: 168 SLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           +LVD YGKC     A +VFD M  G  +VVSWT++I A++ N    EA + F    +   
Sbjct: 92  ALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRG 151

Query: 226 DRPNQHM------LASVINACA---SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
              ++        L ++++ACA       L  G   HG+VV+ G   +  + +++V MY+
Sbjct: 152 WDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYS 211

Query: 277 KCGSVNYSDKVFN--RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG---IKPND 331
            C  V  + +VFN   I    VV++ S+I G    G    +L  F +M+S G   ++PN 
Sbjct: 212 ACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNR 271

Query: 332 VTFVGVLHACSHSGLVDEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           VT + +L +C+  G V+      +++ S +    +  D    T ++DM  R G L  A +
Sbjct: 272 VTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALARE 331

Query: 389 LAKSIQ 394
           +   ++
Sbjct: 332 IFDGVE 337


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 329/574 (57%), Gaps = 4/574 (0%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           H +Q     +  I   + H++I++ G  ++T T N L+N Y +    + AR+LFDEM   
Sbjct: 25  HLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVR 84

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           ++VS+ +++  +   G  + AL+LF +M       +EFT ++V+ AC+    +   KQ+H
Sbjct: 85  SLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLH 144

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                     N+ V ++L+D+Y KC  V  A  VF+ M  R+ V+W+S++  + QN    
Sbjct: 145 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYE 204

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL +F        +  NQ  ++S ++ACA+   L+ GK    V  ++G   N  V S+L
Sbjct: 205 EALVLFHRAQAMGLEH-NQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSL 263

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAKCG +  +  VF+ +   +VV + +++ G +++     ++  F +M   GI PND
Sbjct: 264 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPND 323

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T++ VL ACSH GLV++G ++ D M R + + P+  HY+C+VD+LGR G L EA     
Sbjct: 324 ITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFID 383

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            +  D      +WG+LL++ R++  +++A  A+  L E     A  +V LSN YA    W
Sbjct: 384 RMPFDATAS--MWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRW 441

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           E V   R+ +K +   KE G SW+EI+ + ++F  G     R  E+   L +L  +MK+ 
Sbjct: 442 EEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKI 501

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GY   KT     DVE+  ++E++  HSE+LAL FG++ +P G  IRIMKNLR+C DCH  
Sbjct: 502 GY-KAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSF 560

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KL S I ER+ +VRD NRFHHF+NG CSCG+FW
Sbjct: 561 MKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           QH+L S     A+    + G   H  ++R G   + + ++ L++MY+KCG V  + K+F+
Sbjct: 24  QHLLQSSARNRAA----IEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFD 79

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +   S+V++ +M+    + G    +L LF +M   G   ++ T   V+ AC+    V E
Sbjct: 80  EMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFE 139

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
             Q L     K  +  +    T ++D+  + G + +A  + + +   P+   + W ++++
Sbjct: 140 CKQ-LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECM---PERSDVTWSSMVA 195


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 314/557 (56%), Gaps = 4/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  LK    +N   L  L++ Y +      A+++FDEM  P+ V +T+L+  Y++ G 
Sbjct: 93  LHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 152

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ + +    N + P+ FT   V+ AC+ +ADL TG+ +    E  G   ++ V ++
Sbjct: 153 LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATA 212

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
            VD+Y KC ++  AR VFD M  ++ V+W +++  +A N    EAL++F     +   +P
Sbjct: 213 AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KP 271

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           + + +A  ++AC  LG L  G+ A  +V       N V+ +AL+DMYAKCGS   +  VF
Sbjct: 272 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 331

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            ++    ++ + +MI+G    G  + +  L  +M   G+K ND TF+G+L +C+H+GL+ 
Sbjct: 332 QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 391

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G ++  +M + Y I P  +HY C+VD+L R G L EA++L   + +  +   ++ G LL
Sbjct: 392 DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA--VILGALL 449

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              ++H   ++A     QLI      +  YV LSN Y+  G WE+   LR +MK  G+ K
Sbjct: 450 GGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK 509

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            P CSWVE   + + F  G+       ++   L EL  +MK  GY    T +V  DVEDE
Sbjct: 510 VPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGY-EPTTEVVMFDVEDE 568

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  +  HSE+LA+AF L+    G TIR+ KNLR+C DCH   KL+S I  R+ +VRD 
Sbjct: 569 EKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDN 628

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH FR+GSCSC D+W
Sbjct: 629 NRFHCFRDGSCSCNDYW 645



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 152/318 (47%), Gaps = 7/318 (2%)

Query: 126 PNEFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+  T    +K+ S L   L  G+Q+H          N  V +SL+ +Y KC  +  A+R
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M   + V WT++I A+       EA+ + R   + +  RP+      V+ ACA + 
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARN-AFANGMRPDSFTAVRVLTACARIA 186

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+       + G   +  VA+A VD+Y KCG +  + +VF+++ +   V + +M+ 
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 246

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A  G  R +LDLF  M + G+KP+     G L AC+  G +D G Q +  M      +
Sbjct: 247 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 305

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +    T ++DM  + G   EA+ + + ++       ++W  ++    + G   IA    
Sbjct: 306 DNPVLGTALIDMYAKCGSTVEAWVVFQQMR---KKDIIVWNAMILGLGMTGHEKIAFALV 362

Query: 425 NQLIESNQQV-ANAYVTL 441
            Q+ +S  ++  N ++ L
Sbjct: 363 GQMEKSGVKLNDNTFIGL 380


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 317/565 (56%), Gaps = 4/565 (0%)

Query: 41   KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
            +H + L        +S  + N F  N L++ Y +       R+LFDEM E + VSY  ++
Sbjct: 448  RHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 507

Query: 101  AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
            A Y         L LF++M           +AT++     L D+  GKQIH  +   G  
Sbjct: 508  AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 567

Query: 161  YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
               ++ ++L+DMY KC  +D A+  F     ++ +SWT++I  + QN Q  EAL++F + 
Sbjct: 568  SEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 627

Query: 221  NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
              ++  RP++   +S+I A +SL  +  G+  H  ++RSG + +    S LVDMYAKCG 
Sbjct: 628  R-RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC 686

Query: 281  VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
            ++ + + F+ +   + +++ ++I   A YG  + ++ +F  M+  G  P+ VTF+ VL A
Sbjct: 687  LDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAA 746

Query: 341  CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
            CSH+GL DE +++   M  +Y I P  +HY CV+D LGR G   +  K+   +    D  
Sbjct: 747  CSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKAD-- 804

Query: 401  PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            P++W ++L + R+HG  ++A  A+++L       A  YV LSN YA AG+WE+   ++  
Sbjct: 805  PIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKI 864

Query: 461  MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
            M+  G+ KE G SWVEI+ + Y+F + +       E+   L  L ++M ++GY    T  
Sbjct: 865  MRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCA 924

Query: 521  VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
            + + V+ E + E +  HSERLA+AF L++ P G  IRIMKNL  C DCH V K+IS IV 
Sbjct: 925  LHM-VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVN 983

Query: 581  RDFVVRDVNRFHHFRNGSCSCGDFW 605
            RD +VRD  RFHHF++G CSCGD+W
Sbjct: 984  RDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 175/412 (42%), Gaps = 36/412 (8%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N F+LN +++ Y        A+ LF      N  ++T +M  +   G+   AL LF+ ML
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 121 GNLVWPNEFTFATV--IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           G  V P+  T  TV  +  C++         +H     FG   ++ VC++L+D Y K   
Sbjct: 347 GEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 399

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  ARRVF  M  ++ V++ ++++  ++     +AL++F         R   H+L     
Sbjct: 400 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLL----- 454

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
                      + +H    RS    N  V ++L+D Y+KC  ++   ++F+ +     V+
Sbjct: 455 -----------QYSHS-RSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 502

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           Y  +I   A        L LF EM   G     + +  +L        V  G Q + +  
Sbjct: 503 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQL 561

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
              G+  +      ++DM  + G LD A     +     +   + W  L++    +G+ +
Sbjct: 562 VLLGLASEDLLGNALIDMYSKCGMLDAA---KSNFSNRSEKSAISWTALITGYVQNGQHE 618

Query: 419 IAVEASNQL----IESNQQVANAYVTLSNTYALAGEWENVHS--LRSEMKRT 464
            A++  + +    +  ++   ++ +  S++ A+ G    +HS  +RS  K +
Sbjct: 619 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 670


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/553 (35%), Positives = 315/553 (56%), Gaps = 5/553 (0%)

Query: 54  LKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           + SG L    F  N L++ Y +      A+++FD M   NV S+T LMAG++  G+   A
Sbjct: 67  MDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEA 126

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
           + LF +M      P+       I +C     L  G++IH+   + G   +LV  +++++M
Sbjct: 127 IQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINM 186

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           YGKC  +  A  VF  M  +NV+SW+++I A  QN    EAL  F+    +  +  ++  
Sbjct: 187 YGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMEL-DRIT 245

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
             SV++A  S+G L  GK  H  +V +G + + VV + LV+MY KCGS + +  VF+ + 
Sbjct: 246 YVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMV 305

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             +VV++ +M+    + G  R +L LF+ M   G++PND+TFV +L+ CSHSG   + + 
Sbjct: 306 EKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVS 365

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           H   M + +GI P   H+ C++DMLGR+G+L+EA +L +++ V  D   +LW +LL A  
Sbjct: 366 HFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADA--VLWTSLLCACV 423

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
            H   D A  A+ +  +   + A AY+ LSN YA   +W+    +R  M++ G+ K+ G 
Sbjct: 424 THKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGR 483

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           SW+EI  Q + F AG+++    S +   L+ L  +M+ +GY   +  +V   +E+E ++E
Sbjct: 484 SWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRK-VVIHSMEEEEKDE 542

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           ++  HSE+LA+AFG+ S P    + I+KNLR+C DCH   K IS +  R   VRD NRFH
Sbjct: 543 VLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFH 602

Query: 593 HFRNGSCSCGDFW 605
           HF  G CSCGD+W
Sbjct: 603 HFDRGECSCGDYW 615



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 137/274 (50%), Gaps = 5/274 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           FI      K L     +HS     G  S+  T N +IN Y +      A  +F  M E N
Sbjct: 148 FIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKN 207

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           V+S+++++A +        ALL F+ M    +  +  T+ +V+ A + +  L  GK +H 
Sbjct: 208 VISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHV 267

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   G   ++VV ++LV+MYGKC   D AR VFD M  +NVVSW +++ A+ QN +  E
Sbjct: 268 RIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSRE 327

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS--GCEFNDVVASA 270
           AL +F   + +   RPN     +++  C+  G+     V+H V +R   G    +V    
Sbjct: 328 ALALFDSMDLEGV-RPNDITFVTILYCCSHSGKF-KDAVSHFVEMRQDFGITPREVHFGC 385

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPS-VVTYTSMI 303
           L+DM  + G +  ++++   +  P+  V +TS++
Sbjct: 386 LIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLL 419



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 170/332 (51%), Gaps = 8/332 (2%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193
           +I+ C+    L  G++IH  +++        + + LVDMYGKC  +  A+RVFD M  +N
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
           V SWT ++    Q+ +G EA+++F     Q  + P++  L   I++C +   L  G+  H
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRM-CQEGELPDRVALLKFIDSCGAAKALSQGREIH 165

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
                 G + + V A+A+++MY KCGS+  +  VF R+   +V+++++MI    +  L  
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELAD 225

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTC 372
            +L  F  M   G++ + +T+V VL A +  G ++ G   H+  +Y   G+         
Sbjct: 226 EALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVY--AGLDTSIVVGNT 283

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL-IESN 431
           +V+M G+ G  D+A  +  S+    +   + W  +L+A   +GR   A+   + + +E  
Sbjct: 284 LVNMYGKCGSPDDARDVFDSM---VEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGV 340

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           +     +VT+    + +G++++  S   EM++
Sbjct: 341 RPNDITFVTILYCCSHSGKFKDAVSHFVEMRQ 372


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/512 (38%), Positives = 308/512 (60%), Gaps = 4/512 (0%)

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ SL+ G +  G  + AL  FQKM    +  +E+T  +V+ + + +  +     +H  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   GF+   +V ++L+DMY K   +D A  VF  M  ++VVSWTS++  ++ N    EA
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +++F +    S   P+Q  +ASV++ACA L  +  G+  H  +V+SG E +  V ++LV 
Sbjct: 127 IKLFCKMRI-SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVT 185

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYAKCGS+  +++ F+ +    V+++T++IVG A+ G G+ SL  +++MI+ G KP+ +T
Sbjct: 186 MYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYIT 245

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+G+L ACSH+GL+  G  + ++M + YGI P  +HY C++D+LGR+G+L EA  L   +
Sbjct: 246 FIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQM 305

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            V PD   ++W  LL+A R+H  +++   A+  L E     +  YV LSN Y+ AG+WE+
Sbjct: 306 VVAPDA--VVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWED 363

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  M+  GI KEPG SW+E   +   F + +      +E+ S + E+   +KE GY
Sbjct: 364 AARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGY 423

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V   +     D +DE +E  +  HSE+LA+AFGL+++P+G  IRI KNLR+C DCH   K
Sbjct: 424 VPDMS-FALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMK 482

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             S +  R  ++RD N FHHF  G CSCGD+W
Sbjct: 483 YTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 326/609 (53%), Gaps = 46/609 (7%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L  L S   +H   +K G + + F    L+N Y      + A+ +FD M   NV
Sbjct: 350 LPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNV 409

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++ SL + Y+N G PQ  L +F++M+ N V P+  T  +++ ACS L DL +GK IH  
Sbjct: 410 VTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGF 469

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G   ++ VC++L+ +Y KC  V  A+ VFDL+  R V SW  I+ A+  N +  + 
Sbjct: 470 AVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKG 529

Query: 214 LEMFREFNYQSRD-------------------------------------RPNQHMLASV 236
           L MF + N   RD                                     +P++  + S+
Sbjct: 530 LYMFSQMN---RDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSI 586

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           + AC+    L  GK  H  V R   +++    +ALVDMYAKCG ++ S  VF+ +    V
Sbjct: 587 LRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDV 646

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
            ++ +MI     +G G+ +L LF +M+   +KP+  TF  VL ACSHS LV+EG+Q  +S
Sbjct: 647 FSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNS 706

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M R + + P+A+HYTCVVD+  R G L+EAY   + + ++P    + W   L+  R++  
Sbjct: 707 MSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTA--IAWKAFLAGCRVYKN 764

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           V++A  ++ +L E +   +  YVTL N    A  W     +R  MK  GI K PGCSW  
Sbjct: 765 VELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFH 824

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           + ++ + F AG+       ++ + L EL  K+K  GY    T  V  D++ E + E +  
Sbjct: 825 VGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGY-KPDTDYVLHDIDQEEKAESLCN 883

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+AFG++++    TIR+ KNLR+C DCH+  K +S++V    VVRD  RFHHF+N
Sbjct: 884 HSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKN 943

Query: 597 GSCSCGDFW 605
           G+CSC DFW
Sbjct: 944 GNCSCKDFW 952



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 183/363 (50%), Gaps = 27/363 (7%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCHTKAHFIQQ-----------------------LQECKH 42
            R +   L A  +   N  S+C+    F QQ                       L  C  
Sbjct: 94  ARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSD 153

Query: 43  LISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL 99
           L  L S   +H  +++ G + + F  +  +N Y +    + A+ +FD M   +VV++ SL
Sbjct: 154 LQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSL 213

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
            + Y+N G PQ  L +F++M+ + V P+  T + ++ ACS L DL +GK IH      G 
Sbjct: 214 SSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGM 273

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
             N+ V ++LV++Y  C  V  A+ VFDLM  RNV++W S+   +       + L +FRE
Sbjct: 274 VENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFRE 333

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
                  +P+   ++S++ AC+ L  L SGK  HG  V+ G   +  V +ALV++YA C 
Sbjct: 334 MGLNGV-KPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCL 392

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            V  +  VF+ + + +VVT+ S+       G  +  L++F EM+  G+KP+ VT + +LH
Sbjct: 393 CVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILH 452

Query: 340 ACS 342
           ACS
Sbjct: 453 ACS 455



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 200/418 (47%), Gaps = 45/418 (10%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L  L S   +H   LK G + N F  N L+N Y      + A+ +FD M   NV
Sbjct: 249 LSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNV 308

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +++ SL + Y+N G PQ  L +F++M  N V P+    ++++ ACS L DL +GK IH  
Sbjct: 309 ITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGF 368

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G   ++ VC++LV++Y  C  V  A+ VFDLM  RNVV+W S+   +       + 
Sbjct: 369 AVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKG 428

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L +FRE       +P+   + S+++AC+ L  L SGKV HG  VR G   +  V +AL+ 
Sbjct: 429 LNVFREMVLNGV-KPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLS 487

Query: 274 MYAKCGSVNYSDKVFNRISNPSV-----------------------------------VT 298
           +YAKC  V  +  VF+ I +  V                                   +T
Sbjct: 488 LYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEIT 547

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           ++ +I G  K      ++++F +M + G KP++ T   +L ACS S  +  G +    ++
Sbjct: 548 WSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVF 607

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHG 415
           R +    D      +VDM  + G L     L++++  + P      W T++ A+ +HG
Sbjct: 608 RHWKDW-DLARTNALVDMYAKCGGLS----LSRNVFDMMPIKDVFSWNTMIFANGMHG 660



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 190/366 (51%), Gaps = 5/366 (1%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           + +   H +  + G +S+    N  I+ Y + K  + AR++FD+++  +VV++ SL A Y
Sbjct: 57  LKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACY 116

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +N G PQ  L +F+KM  N V  N  T ++++  CS L DL +GK+IH  +   G   ++
Sbjct: 117 VNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDV 176

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V S+ V+ Y KC  V  A+ VFDLM  R+VV+W S+   +       + L +FRE    
Sbjct: 177 FVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLD 236

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
              +P+   ++ +++AC+ L  L SGK  HG  ++ G   N  V++ALV++Y  C  V  
Sbjct: 237 GV-KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVRE 295

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  VF+ + + +V+T+ S+       G  +  L++F EM   G+KP+ +    +L ACS 
Sbjct: 296 AQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQ 355

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
              +  G + +     K+G++ D    T +V++      + EA  +     + P    + 
Sbjct: 356 LKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTV---FDLMPHRNVVT 411

Query: 404 WGTLLS 409
           W +L S
Sbjct: 412 WNSLSS 417



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 1/239 (0%)

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           I  G P  A+ ++       + P++  F  V KAC+   D +  KQ H      G   ++
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + ++ +  YGKC  V+GARRVFD +  R+VV+W S+   +       + L +FR+    
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGL- 134

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           ++ + N   ++S++  C+ L  L SGK  HG VVR G   +  V+SA V+ YAKC  V  
Sbjct: 135 NKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVRE 194

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           +  VF+ + +  VVT+ S+       G  +  L++F EM+  G+KP+ VT   +L ACS
Sbjct: 195 AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 319/541 (58%), Gaps = 17/541 (3%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +++ Y +  +   AR LFDEM + NVVS+T++++GY   G+  +A  LF+ M       N
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----N 235

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCNDVDGARRV 185
           E ++       +ML   I    +    E F    ++ +  C++++  +G+   VD A+ V
Sbjct: 236 EVSWT------AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ M  R+  +W+++I A+ QN    EAL  FRE  ++   RPN   + S++  CA+L  
Sbjct: 290 FEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV-RPNYPSVISILTVCAALAV 348

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  G+  H  ++R   + +    SAL+ MY KCG+++ + +VF+      +V + SMI G
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A++GLG  +L +F++M   G+ P+ +T++G L ACS++G V EG +  +SM     I P
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A+HY+C+VD+LGR+G ++EA+ L K++ V+PD   ++WG L+ A R+H   +IA  A+ 
Sbjct: 469 GAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDA--VIWGALMGACRMHRNAEIAEVAAK 526

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +L+E     A  YV LS+ Y   G WE+   +R  +    ++K PGCSW+E   + + F 
Sbjct: 527 KLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFT 586

Query: 486 AGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
           +G+ L     + +L +L +L+  + E GY       V  D+++E +   +  HSER A+A
Sbjct: 587 SGDVLAHPEHAAILRILEKLDGLLMESGY-SADGSFVLHDIDEEQKSHSLRYHSERQAVA 645

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           +GL+ IP+G+ IR+MKNLR+C DCH   KLI+ I  R+ V+RD NRFHHF++G CSC D+
Sbjct: 646 YGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDY 705

Query: 605 W 605
           W
Sbjct: 706 W 706



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 155/331 (46%), Gaps = 29/331 (8%)

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
             P+VVS+TSL+ GY+  G    A+ LFQ+M       N  ++        +L  L+   
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTV------LLGGLLDAG 157

Query: 149 QIHTHIETFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           +++     F      ++V  ++++  Y +   +  AR +FD M  RNVVSWT++I  +AQ
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N + + A ++F E   +  +     ML   I A         G V     + +    + V
Sbjct: 218 NGEVNLARKLF-EVMPERNEVSWTAMLVGYIQA---------GHVEDAAELFNAMPEHPV 267

Query: 267 VA-SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            A +A++  + + G V+ +  VF ++      T+++MI    +      +L  F EM+ R
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLD 384
           G++PN  + + +L  C+   ++D G +   +M R  + +  D    + ++ M  + G LD
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIKCGNLD 385

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +A ++  + +       ++W ++++    HG
Sbjct: 386 KAKRVFHTFE---PKDIVMWNSMITGYAQHG 413



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 120/289 (41%), Gaps = 53/289 (18%)

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            +  +++GAR  F+ M  R   S+ +++  + +N     AL +FR     SRD       
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM--PSRD------- 78

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
                  AS   L+S     G+ +R            L D  A   S+ +          
Sbjct: 79  ------LASYNALIS-----GLSLRR---------QTLPDAAAALASIPFP--------- 109

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
           PSVV++TS++ G  ++GL   ++ LF +M  R    N V++  +L     +G V+E  + 
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            D M  +     D   +T ++    + GR+ EA  L   +   P    + W  ++S    
Sbjct: 166 FDEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEM---PKRNVVSWTAMISGYAQ 217

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +G V++A +    + E N+    ++  +   Y  AG  E+   L + M 
Sbjct: 218 NGEVNLARKLFEVMPERNEV---SWTAMLVGYIQAGHVEDAAELFNAMP 263



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M K+  +N     A S+      R         I  L  C  L  L     VH+ +L+  
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           F  + F ++ LI  Y++      A+++F      ++V + S++ GY   G  + AL +F 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQI------HTHIETFGFQYNLVVCSSLVD 171
            M    + P+  T+   + ACS    +  G++I      ++ I      Y     S +VD
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY-----SCMVD 478

Query: 172 MYGKCNDVDGARRVFDLM 189
           + G+   V+ A   FDL+
Sbjct: 479 LLGRSGLVEEA---FDLI 493


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/634 (34%), Positives = 329/634 (51%), Gaps = 48/634 (7%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCY 72
           L + + TR        T       L  C      A +H+  +++    +      L   Y
Sbjct: 7   LPSPASTRHPAGGGALTADRAAALLAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAY 66

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL--VWPNEFT 130
               +  +A  L     +P  V YTS +  + + G  + AL L  +ML +   + P   T
Sbjct: 67  AASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHT 126

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM------------------ 172
            +  + AC  LA    G+ +H +           V ++L+ M                  
Sbjct: 127 LSASLPACGCLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMR 183

Query: 173 --------------YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
                         Y K   +D AR +FD +  +++V W +++  + Q+ +  EAL +FR
Sbjct: 184 PDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFR 243

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG----CEFNDVVASALVDM 274
           +   +S   P++  +   ++A A LG   SG+  H  V   G       N  V +ALVDM
Sbjct: 244 QM-LRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDM 302

Query: 275 YAKCGSVNYSDKVFNRI---SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           Y KCGS+  +  VF  +    +  VV + +MI G A +G  R +L+ F ++ ++G+ P D
Sbjct: 303 YYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTD 362

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +TF+GVL+ACSHSGLVDEG     +M  +YGI+P  +HY C+VD+LGR GR++EA+ L +
Sbjct: 363 ITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQ 422

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           S++  PD    +W +LL A RLH  + +    ++ L+ +    +  YV LSN YA AG+W
Sbjct: 423 SMKAKPDAA--MWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKW 480

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
             V  +RS M+ +G+ KEPGCS VE+  +   F AG+    R +E+ + L E+    + R
Sbjct: 481 REVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARAR 540

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           G+V   T LV  D++D A+E  + +HSE+LALAFGLIS P    I+I+KNLR C DCH V
Sbjct: 541 GHV-PHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAV 599

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KL+S+   R  V RD NRFHHF +GSCSCGD+W
Sbjct: 600 LKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 322/567 (56%), Gaps = 4/567 (0%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E   L SL  +H   ++ GF  +    N  +  Y +      A ++F  M    V S+ +
Sbjct: 248 EISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNA 307

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           L+ G    G P+ AL L+ +M  + + P+ FT  +++ A + L  L  GK++H  +   G
Sbjct: 308 LIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHG 367

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            + +  +  SL+ +Y  C +   AR +FD M  ++ VSW ++I  ++QN    +AL +FR
Sbjct: 368 LEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFR 427

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +       +P+   + SV+ AC+    L  GK  H   +++    +  VA + +DMYAK 
Sbjct: 428 KL-VSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKS 486

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +  S  VF+ + N  + ++ ++I     +G G  S++LF  M   G  P+  TF+G+L
Sbjct: 487 GCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGIL 546

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
             CSH+GLV+EG+++ + M   +GI P  +HY CV+DMLGR GRLD+A +L   +   PD
Sbjct: 547 TVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPD 606

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +W +LLS  R  G ++I    + +L+E   +    YV+LSN YA +G W++V  +R
Sbjct: 607 --SRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVR 664

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             +K  G+ K+ GCSW+E+  + ++F AG+ L  +  E+    R+LE+KM + GY    T
Sbjct: 665 QMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGY-KPNT 723

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V  DV++E + E +  HSE+LA+ FGL++  KG T+RI KNLR+C DCH+  K +S++
Sbjct: 724 SAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEV 783

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
             R+ ++RD  RFHHF++G CSCGD+W
Sbjct: 784 TGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 153/297 (51%), Gaps = 2/297 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K G L + F  N LI  Y +      A ++F  M   N+VS+ S+++G+   G 
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF 112

Query: 109 PQIALLLFQKMLGNL--VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
            +    +  +M+     + P+  T  TV+  C+   D+  G +IH      G   ++ V 
Sbjct: 113 SKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVN 172

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SLVDMY KC  +  A+ +FD    +N VSW ++I          EA  +FRE   Q   
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             N+  + +++ AC  + +L S K  HG  +R G +++++VA+  V  YAKCG +  +++
Sbjct: 233 EVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAER 292

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           VF  +   +V ++ ++I G A+ G  R +L+L+ +M   G+ P+  T   +L A +H
Sbjct: 293 VFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 3/233 (1%)

Query: 112 ALLLFQKMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
           A+ +F K++ +  +  + FTF  VIKAC+   D   G+ IH  +   G   ++ V ++L+
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPN 229
            MYGK   VD A +VF  M  RN+VSW SII   ++N    +  +M  E         P+
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPD 133

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L +V+  CA    +  G   HG+ V+ G   +  V ++LVDMY+KCG +  +  +F+
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD 193

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHAC 341
           + +  + V++ +MI G    G    + +LF EM +   I+ N+VT + +L AC
Sbjct: 194 KNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC-ASLGRLVSGKVAHGVVVRSG 260
           VA  +N    +A++MF +    +    +      VI AC  SL R + G+V HG+V++ G
Sbjct: 3   VAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGL-GEVIHGMVIKMG 61

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
              +  V +AL+ MY K G V+ + KVF+ +   ++V++ S+I G ++ G  +   D+  
Sbjct: 62  LLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLV 121

Query: 321 EMIS--RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           EM++   G+ P+  T V VL  C+    V  GI+ +  +  K G+  D +    +VDM  
Sbjct: 122 EMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR-IHGLAVKLGLSEDVRVNNSLVDMYS 180

Query: 379 RTGRLDEAYKL 389
           + G L EA  L
Sbjct: 181 KCGYLTEAQML 191


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 314/557 (56%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+  LK    +N   L  L++ Y +      A+++FDEM  P+ V +T+L+  Y++ G 
Sbjct: 548  LHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 607

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             + A+ + +    N + P+ FT   V+ AC+ +ADL TG+ +    E  G   ++ V ++
Sbjct: 608  LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATA 667

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
             VD+Y KC ++  AR VFD M  ++ V+W +++  +A N    EAL++F     +   +P
Sbjct: 668  AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KP 726

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            + + +A  ++AC  LG L  G+ A  +V       N V+ +AL+DMYAKCGS   +  VF
Sbjct: 727  DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 786

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             ++    ++ + +MI+G    G  + +  L  +M   G+K ND TF+G+L +C+H+GL+ 
Sbjct: 787  QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 846

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            +G ++  +M + Y I P  +HY C+VD+L R G L EA++L   + +  +   ++ G LL
Sbjct: 847  DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA--VILGALL 904

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
               ++H   ++A     QLI      +  YV LSN Y+  G WE+   LR +MK  G+ K
Sbjct: 905  GGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK 964

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
             P CSWVE   + + F  G+       ++   L EL  +MK  GY    T +V  DVEDE
Sbjct: 965  VPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGY-EPTTEVVMFDVEDE 1023

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +E  +  HSE+LA+AF L+    G TIR+ KNLR+C DCH   KL+S I  R+ +VRD 
Sbjct: 1024 EKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDN 1083

Query: 589  NRFHHFRNGSCSCGDFW 605
            NRFH FR+GSCSC D+W
Sbjct: 1084 NRFHCFRDGSCSCNDYW 1100



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 6/310 (1%)

Query: 126 PNEFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+  T    +K+ S L   L  G+Q+H          N  V +SL+ +Y KC  +  A+R
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M   + V WT++I A+       EA+ + R   + +  RP+      V+ ACA + 
Sbjct: 583 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARN-AFANGMRPDSFTAVRVLTACARIA 641

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+       + G   +  VA+A VD+Y KCG +  + +VF+++ +   V + +M+ 
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 701

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A  G  R +LDLF  M + G+KP+     G L AC+  G +D G Q +  M      +
Sbjct: 702 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 760

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +    T ++DM  + G   EA+ + + ++       ++W  ++    + G   IA    
Sbjct: 761 DNPVLGTALIDMYAKCGSTVEAWVVFQQMR---KKDIIVWNAMILGLGMTGHEKIAFALV 817

Query: 425 NQLIESNQQV 434
            Q+ +S  ++
Sbjct: 818 GQMEKSGVKL 827


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/546 (35%), Positives = 311/546 (56%), Gaps = 4/546 (0%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           SN F  N L++ Y +       ++LF EM+E + VSY  ++AGY       I L LF++M
Sbjct: 273 SNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREM 332

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                      +A+++     +  +  GKQIH  +   G     +V ++L+DMY KC  +
Sbjct: 333 QSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGML 392

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           D A+  F     +  VSWT++I    QN Q  EAL++F     ++   P++   +S I A
Sbjct: 393 DAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMR-RAGLSPDRATFSSTIKA 451

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
            ++L  +  G+  H  ++RSG   +    SAL+DMY KCG ++ + + F+ +   + +++
Sbjct: 452 SSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISW 511

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            ++I   A YG  + ++ +F  M+  G KP+ VTF+ VL ACSH+GL +E +++ + M  
Sbjct: 512 NAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEY 571

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           +YGI P  +HY+CV+D LGR GR D+  ++   +  + D  P++W ++L + R HG  D+
Sbjct: 572 EYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDD--PIIWSSILHSCRTHGNQDL 629

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           A  A+ +L       A  YV LSN +A AG+WE+   ++  M+  G+ KE G SWVE++ 
Sbjct: 630 ARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKH 689

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + Y+F + +      +E+   L  L ++M ++GY    T      V+D+ + E +  HSE
Sbjct: 690 KVYSFSSNDQTNPMITEIKDELERLYKEMDKQGY-KPDTSCTLQQVDDDIKLESLKYHSE 748

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLA+AF LI+ P G  IR+MKNL  C DCH   K++S IV RD +VRD +RFHHF++G C
Sbjct: 749 RLAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFC 808

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 809 SCGDYW 814



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 190/380 (50%), Gaps = 7/380 (1%)

Query: 44  ISLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           I +AS+H   LK G L SN    N L++ Y +      AR++F EM   + V+Y ++M G
Sbjct: 156 IIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMG 215

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
               G    AL LF  M    +    FTF+TV+   + + DL  G+Q+H  +       N
Sbjct: 216 CSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR-ATSSN 274

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V +SL+D Y KC+ +D  +++F  M  R+ VS+  +I  +A N      L +FRE   
Sbjct: 275 VFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQS 334

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            S DR      AS+++   S+  +  GK  H  +V  G    D+V +AL+DMY+KCG ++
Sbjct: 335 LSFDR-QALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLD 393

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +   F   ++ + V++T+MI G  + G    +L LF  M   G+ P+  TF   + A S
Sbjct: 394 AAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASS 453

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           +  ++  G Q L S   + G +      + ++DM  + G LDEA +    +   P+   +
Sbjct: 454 NLAMIGLGRQ-LHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEM---PERNSI 509

Query: 403 LWGTLLSASRLHGRVDIAVE 422
            W  ++SA   +G+   A++
Sbjct: 510 SWNAVISAYAHYGQAKNAIK 529



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 1/196 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++++  G  S     N LI+ Y +      A+  F    +   VS+T+++ G +  GQ
Sbjct: 363 IHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQ 422

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF  M    + P+  TF++ IKA S LA +  G+Q+H+++   G   ++   S+
Sbjct: 423 QEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSA 482

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  +D A + FD M  RN +SW ++I A+A   Q   A++MF E       +P
Sbjct: 483 LLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMF-EGMLCYGFKP 541

Query: 229 NQHMLASVINACASLG 244
           +     SV++AC+  G
Sbjct: 542 DSVTFLSVLSACSHNG 557



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 15/337 (4%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMAGYINM--GQPQIAL 113
           +N F+LN +++ Y R  +   A  LF  +  P    + V++T ++  + +    +   A+
Sbjct: 64  NNAFSLNRMLSGYSRSGQLSAAHHLF--LSSPPHLRDAVTWTVMIGAFASAPGARASDAV 121

Query: 114 LLFQKMLGNLVWPNEFTFATVI---KACSMLADLITGKQIHTHIETFGFQY-NLVVCSSL 169
            LF+ ML   V P+  T ATV+    A    A  I    +H      G  + N+VVC++L
Sbjct: 122 SLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTL 181

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +D Y K   +  ARRVF  M  R+ V++ ++++  ++     EAL++F     +      
Sbjct: 182 LDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGL-AAT 240

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +   ++V+     +G L  G+  HG+V R+    N  V ++L+D Y+KC  ++   K+F+
Sbjct: 241 RFTFSTVLTVATGVGDLCLGRQVHGLVARATSS-NVFVNNSLLDFYSKCDCLDEMKKLFH 299

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +     V+Y  MI G A        L LF EM S       + +  +L        +  
Sbjct: 300 EMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGI 359

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           G Q + +     G+  +      ++DM  + G LD A
Sbjct: 360 GKQ-IHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAA 395


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 309/531 (58%), Gaps = 10/531 (1%)

Query: 66  NHLINCYVRLKK-TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM---LG 121
           N LI+   R  +    AR+LFD M + +  ++++L++GY   GQP+ AL L+++M    G
Sbjct: 98  NTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPG 157

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY---NLVVCSSLVDMYGKCND 178
           N    NEFT ++ + A +       G+++H H+   G      + V+ S+L DMY KC  
Sbjct: 158 NDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGR 217

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD ARRVFD M  R+ VSWT+++  +    +G E   +F         RPN+   A V+ 
Sbjct: 218 VDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLR 277

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           ACA       G+  HG + +SG   +    SAL+ MY+KCG +  + +VF  ++ P +V+
Sbjct: 278 ACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVS 337

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           +T++I G A+ G    +L  F+  +  GIKP+ VTFVGVL AC+H+GLVD+G++   S+ 
Sbjct: 338 WTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIK 397

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            +Y I   A HY CV+D+L R+G+ + A K+  ++ V P+    LW +LL   R+H  V 
Sbjct: 398 EQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPN--KFLWASLLGGCRIHKNVG 455

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  L E   +    YVTL+N YA  G ++ V  +R  M+  GI K P  SW+E+ 
Sbjct: 456 LARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVG 515

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
            + + F  G+    +  E+ +LL++L  KM E GYV      V  DVEDE +E+ +G HS
Sbjct: 516 RRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYV-ADIEFVLHDVEDEQKEQDIGYHS 574

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           ERLA+AFG+I+ P+G  I++ KNLR+C DCH   KLIS IV+RD +VRD N
Sbjct: 575 ERLAVAFGIIASPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSN 625



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + KSG   + F  + L+  Y +      A ++F+ M +P++VS+T++++GY   GQ
Sbjct: 291 VHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQ 350

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI-HTHIETFGFQYNLVVCS 167
           P+ AL  F   L + + P+  TF  V+ AC+    +  G +I H+  E +  ++     +
Sbjct: 351 PEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYA 410

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
            ++D+  +    + A ++   M  + N   W S++
Sbjct: 411 CVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLL 445


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/545 (36%), Positives = 311/545 (57%), Gaps = 17/545 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F+ N ++  YVR +  + AR LF+ M E ++VS+ ++++GY   G    A  +F KM 
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKM- 83

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                         I    +LA  +   +I      F  + +  + S    M G    V 
Sbjct: 84  ---------PLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGF---VR 131

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
             R +FD M  R+ +SW+++I  ++QN    EAL  F E   +  +R N+      ++ C
Sbjct: 132 KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQ-RDCERLNRSSFTCALSTC 190

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           +++  L  G+  H  +V++G +    V +AL+ MY KCGS++ +   F  I    VV++ 
Sbjct: 191 SNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWN 250

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +MI G A++G G  +L +F  M + GI+P+D T V VL ACSH+GLVD+G ++  SM R 
Sbjct: 251 TMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRD 310

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           YGI     HYTC+VD+LGR G+L+EA  L K++  +PD     WG LL ASR+HG  ++ 
Sbjct: 311 YGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAAT--WGALLGASRIHGNTELG 368

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
            +A+  + E     +  Y+ LS  YA +G W +   +R EM+  G+ K PG SW+E++++
Sbjct: 369 EKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNK 428

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F  G+       ++ + L E++ K+K+ GY+   T LVF DVE+E +  ++  HSE+
Sbjct: 429 IHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYI-SSTNLVFHDVEEEEKVHMLKYHSEK 487

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+A+G++ IP G  IR++KNLR+C DCH+  K IS IV R  ++RD +RFH+F  GSCS
Sbjct: 488 LAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCS 547

Query: 601 CGDFW 605
           C DFW
Sbjct: 548 CRDFW 552



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI------- 104
           EI     L N  + N L+  YV+  + + A++LF+  ++  +VS+  LM G++       
Sbjct: 78  EIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLF 137

Query: 105 -NMGQ------------------PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
            NM Q                   + AL  F +M  +    N  +F   +  CS +A L 
Sbjct: 138 DNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALE 197

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            G+Q+H  +   G+Q    V ++L+ MY KC  +D AR  F  +  ++VVSW ++I  +A
Sbjct: 198 LGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYA 257

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFN 264
           ++  G EAL +F E    +  RP+   + SV+ AC+  G +  G      + R  G    
Sbjct: 258 RHGFGEEALTVF-ELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAK 316

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG---LGRFSLDLFN 320
            V  + +VD+  + G +  +  +   +   P   T+ +++  +  +G   LG  +  +  
Sbjct: 317 LVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIF 376

Query: 321 EM 322
           EM
Sbjct: 377 EM 378



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 96/199 (48%), Gaps = 8/199 (4%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
            ++ F   L  C ++ +L     +H  ++K+G+ +  +  N L+  Y +      AR  F
Sbjct: 179 NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAF 238

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
            E+LE +VVS+ +++ GY   G  + AL +F+ M    + P++ T  +V+ ACS    + 
Sbjct: 239 QEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVD 298

Query: 146 TGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            G +  ++    +G    LV  + +VD+ G+   ++ A+ +   M    +  +W +++ A
Sbjct: 299 QGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGA 358

Query: 204 ---HAQNAQGHEALEMFRE 219
              H     G +A ++  E
Sbjct: 359 SRIHGNTELGEKAAQIIFE 377



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 64/330 (19%), Positives = 137/330 (41%), Gaps = 32/330 (9%)

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++  Y + +  D AR +FD M  R++ SW  ++  + +N     A  +F     +     
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N  +     N      R    ++ + + +++G  +N ++A+     Y + G +  + ++F
Sbjct: 61  NAMLSGYAQNGFVDEAR----EIFYKMPLKNGISWNGLLAA-----YVQNGRIEDAKRLF 111

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
               + ++V++  ++ G       R   +LF+ M  R    + +++  ++   S +G  +
Sbjct: 112 ESKMDWTLVSWNCLMGGFV-----RKRRNLFDNMPQR----DSISWSAMIAGYSQNGCSE 162

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWGTL 407
           E +     M R    + +   +TC +        L+   +L  + ++     G  +   L
Sbjct: 163 EALHFFVEMQRDCERL-NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNAL 221

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L+     G +D A +A  +++E +    N   T+ + YA  G  E   ++   MK TGI 
Sbjct: 222 LAMYCKCGSIDEARDAFQEILEKDVVSWN---TMIHGYARHGFGEEALTVFELMKTTGIR 278

Query: 468 KE--------PGCSWVEIRDQ-TYAFYAGN 488
            +          CS   + DQ +  FY+ N
Sbjct: 279 PDDATMVSVLAACSHAGLVDQGSEYFYSMN 308


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/604 (33%), Positives = 330/604 (54%), Gaps = 49/604 (8%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL 99
           C  ++S   +  E+ K     +  T   +I  YVR      AR++F+ M+E    ++ ++
Sbjct: 205 CSAMVSARKLFDEMPKR----DELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAM 260

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
           ++GY++ G  Q AL L +KM    +  ++ T+ T+I AC+ +     GKQ+H +I     
Sbjct: 261 ISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNEL 320

Query: 160 QYN----LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH----------- 204
             N    L V ++L+ +Y K N VD AR++F  M  RN+++W +I+  +           
Sbjct: 321 NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKS 380

Query: 205 --------------------AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
                               AQN  G E L++F++      + P     A  + AC+ LG
Sbjct: 381 FFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE-PCDFAFAGALTACSVLG 439

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+  H  +V  G E +  V +A++ MYAKCG V  ++ VF  + +  +V++ SMI 
Sbjct: 440 ALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
              ++G G  +++LF++M+  G+ P+ +TF+ VL ACSH+GLV++G  + +SM   YGI 
Sbjct: 500 ALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           P   HY  +VD+  R G    A  +  S+   P G P +W  LL+  R+HG +D+ +EA+
Sbjct: 560 PCEDHYARMVDLFCRAGMFSYARIVIDSMPSKP-GAP-VWEALLAGCRIHGNMDLGIEAA 617

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
            QL +   Q    YV LSN YA  G W +V  +R  M+   + KEP CSW+E+ ++ + F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 485 YAGNALFERGSEVLSLLRELER---KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
              + +     EVLS+ R LE+   +MK+ GY+   T  V  D+E E +E  +  HSE+L
Sbjct: 678 MVDDDVH---PEVLSVYRYLEQLGLEMKKLGYI-PDTKFVLHDMEYEQKEHALSTHSEKL 733

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+ FG++ +P   T+R+ KN+R+C DCH+ FK +S +  R+ +VRD  RFHHF+NG CSC
Sbjct: 734 AVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSC 793

Query: 602 GDFW 605
            D+W
Sbjct: 794 RDYW 797



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 209/510 (40%), Gaps = 117/510 (22%)

Query: 33  FIQQLQECKHL----ISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           + ++LQ C        SLA +VH+ ++ SGF      LN L+  Y +      ARQLF+E
Sbjct: 14  YAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEE 73

Query: 88  MLEPNVVSYTSLMAGYINMGQPQI---------------------------------ALL 114
           +  P+ ++ T+L+  Y  +G  ++                                 AL 
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSM-LADLITGKQIHTHIETFGFQ-YNLVVCSSLVDM 172
           LF+ M  +   P++FTF +V+ A  + + +     Q+H  +   G    +  V ++L+ +
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 173 YGK--------CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF---- 220
           Y K        C+ +  AR++FD M  R+ ++WT++I  + +N   + A E+F       
Sbjct: 194 YVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 221 ---------------NYQSRDRPNQHM-----------LASVINACASLGRLVSGKVAHG 254
                           +Q      + M             ++I+ACA++G    GK  H 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHA 313

Query: 255 VVVRSGCEFND----VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY----------- 299
            ++++    N      V++AL+ +Y K   V+ + K+F  +   +++T+           
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 300 --------------------TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
                               T MI G A+ G G   L LF +M   G +P D  F G L 
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALT 433

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACS  G ++ G Q L +     G          ++ M  + G ++ A  +  ++   P  
Sbjct: 434 ACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM---PSV 489

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
             + W ++++A   HG    A+E  +Q+++
Sbjct: 490 DLVSWNSMIAALGQHGHGVKAIELFDQMLK 519


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/573 (35%), Positives = 322/573 (56%), Gaps = 17/573 (2%)

Query: 44  ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR------QLFDEMLEPNVVSYT 97
           + L  +H+ +L++  + N+   +H    + RL  + + R      ++F + L P +    
Sbjct: 25  LHLRQIHAVLLRTSLIRNSDVFHHF---FSRLALSLIPRDINYSCRVFSQRLNPTLSHCN 81

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIET 156
           +++  +     P     LF+ +  N+ +P N  + +  +K C    DL+ G QIH  I +
Sbjct: 82  TMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFS 141

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  + ++ ++L+D+Y  C +   A +VFD +  R+ VSW  +I  + +N +  + L +
Sbjct: 142 DGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVL 201

Query: 217 FREFNYQSRDR---PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           F +      DR   P+       + ACA+LG L  GK  H  +  +G      +++ LV 
Sbjct: 202 FDKMK-NDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVS 260

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY++CGS++ + +VFNR+   +VV++T+MI G A  G G+ +++ FNEM+  GI P + T
Sbjct: 261 MYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQT 320

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
             G+L ACSHSGLVDEG+   D M   ++ I P+  HY C+VD+LGR   LD+AY L KS
Sbjct: 321 LTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKS 380

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           +++ PD    +W TLL A R+HG V++       LIE   + A  YV L NTY+  G+WE
Sbjct: 381 MEMKPDST--IWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWE 438

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  LRS MK+  I   PGCS +E++   + F   +    R  E+  +L E+ +++K  G
Sbjct: 439 KVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAG 498

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T  +     +E +   +  HSE+LA+AFG++  P   TIR+ KNLR C DCH+  
Sbjct: 499 YVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNFA 558

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +SD+ +R  +VRD +RFHHF+ GSCSC DFW
Sbjct: 559 KFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/526 (36%), Positives = 313/526 (59%), Gaps = 43/526 (8%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +R++F++M E NV+S+T+++  Y+  G+  + A+ LF KM+   V             C 
Sbjct: 14  SRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV------------NC- 60

Query: 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199
                                    V +SL+ MY +   ++ AR+ FD++  +N+VS+ +
Sbjct: 61  -------------------------VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNA 95

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           I+  +A+N +  EA  +F E    +    +    AS+++  AS+G +  G+  HG +++ 
Sbjct: 96  IVDGYAKNLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG 154

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G + N  + +AL+ MY++CG++  + +VFN + + +V+++TSMI G AK+G    +L++F
Sbjct: 155 GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMF 214

Query: 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
           ++M+  G KPN++T+V VL ACSH G++ EG +H +SMY+++GI+P  +HY C+VD+LGR
Sbjct: 215 HKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGR 274

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439
           +G L EA +   S+ +  D   L+W TLL A R+HG  ++   A+  ++E       AY+
Sbjct: 275 SGLLVEAMEFINSMPLMADA--LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYI 332

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLS 499
            LSN +A AG+W++V  +R  MK   + KE GCSW+E+ ++ + F+ G     +  ++  
Sbjct: 333 LLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQ 392

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
            L +L  K+KE GY+   T  V  D+E+E +E+ +  HSE++A+AFGLIS  +   IRI 
Sbjct: 393 ELDQLASKIKEMGYI-PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIF 451

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+C DCH   K IS    R+ VVRD NRFHH +NG CSC D+W
Sbjct: 452 KNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 116/200 (58%), Gaps = 8/200 (4%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N LI+ Y R  + + AR+ FD + E N+VSY +++ GY    + + A LLF ++    + 
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 122

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
            + FTFA+++   + +  +  G+QIH  +   G++ N  +C++L+ MY +C +++ A +V
Sbjct: 123 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 182

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ M  RNV+SWTS+I   A++     ALEMF +   ++  +PN+    +V++AC+ +G 
Sbjct: 183 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM-LETGTKPNEITYVAVLSACSHVGM 241

Query: 246 LVSGK-------VAHGVVVR 258
           +  G+         HG+V R
Sbjct: 242 ISEGQKHFNSMYKEHGIVPR 261



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 8/198 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  +LK G+ SN    N LI+ Y R    + A Q+F+EM + NV+S+TS++ G+   G 
Sbjct: 147 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 206

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCS 167
              AL +F KML     PNE T+  V+ ACS +  +  G K  ++  +  G    +   +
Sbjct: 207 ATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA 266

Query: 168 SLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVA---HAQNAQGHEALEMFREFNYQ 223
            +VD+ G+   +  A    + M    + + W +++ A   H     G  A EM  E   Q
Sbjct: 267 CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILE---Q 323

Query: 224 SRDRPNQHMLASVINACA 241
             D P  ++L S ++A A
Sbjct: 324 EPDDPAAYILLSNLHASA 341


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 322/563 (57%), Gaps = 4/563 (0%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L  L+ +H  I + G    T   N L+N Y R +    AR +FD++  PN++S+ S++  
Sbjct: 378 LEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGI 437

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y+   +   AL LF+ M    + P+   F T++ AC++ +   T K +H  +E  G   +
Sbjct: 438 YVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGS 497

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            +V +SLV+MY K  ++D A  +   M  + + +W  +I  +A + +  EALE +++   
Sbjct: 498 PLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQL 557

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           ++    ++    SV+NAC S   L  GK+ H   V  G + + +V +AL +MY+KCGS+ 
Sbjct: 558 EAIP-VDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSME 616

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + ++F+ +   S V++  M+   A++G     L L  +M   G+K N +TFV VL +CS
Sbjct: 617 NARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCS 676

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GL+ EG Q+  S+    GI    +HY C+VD+LGR G+L EA K    + ++P  G +
Sbjct: 677 HAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEP--GIV 734

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
            W +LL A R+   +D    A+ +L+E +   ++A V LSN Y+  G+W+N   LR  M 
Sbjct: 735 TWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMA 794

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
              + K PG S ++++++ + F   +    R +E+   + EL   M+E GYV   T +V 
Sbjct: 795 SRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYV-PDTKMVL 853

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            DV++E +E ++  HSE+LA+AFGLIS P+  ++ I KNLR+C DCH   K IS I  R+
Sbjct: 854 HDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGRE 913

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            VVRD +RFHHFR+GSCSC D+W
Sbjct: 914 IVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 219/456 (48%), Gaps = 44/456 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  L+ GF  NT     L+N Y +      A+ +F+EM E NVV++ +++  Y   G 
Sbjct: 80  VHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGC 139

Query: 109 P-QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             ++A+ LF +ML   V  N  TF  V+ +      L  GK IH+ +       ++ V +
Sbjct: 140 CWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNT 199

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LV+ Y KC  +  AR+VFD M CR+V +W S+I A++ + +  EA  +F+    Q  +R
Sbjct: 200 ALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ-QEGER 258

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            ++    S+++AC +   L  GK     +  +  E +  V +AL+ MYA+C S   + +V
Sbjct: 259 CDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQV 318

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA-CSHSGL 346
           F R+   +++T++++I   A +G    +L  F  M   GI PN VTF+ +L+   + SGL
Sbjct: 319 FGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGL 378

Query: 347 --------------VDEGIQHLDSMYRKYG---------------IIPDAKHYTCVVDML 377
                         +D+     +++   YG                +P+   +  ++ + 
Sbjct: 379 EELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIY 438

Query: 378 GRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLSASRL--HGRVDIAVEASNQLIESNQ 432
            +  R D+A +L +++Q   + PD    +  T+L A  +  HGR    V   +Q +E + 
Sbjct: 439 VQCERHDDALQLFRTMQQQGIQPDRVNFM--TILGACTIGSHGRTRKLV---HQCVEESG 493

Query: 433 QVANAYV--TLSNTYALAGEWENVHSLRSEMKRTGI 466
              +  V  +L N YA AGE +    +  EM    I
Sbjct: 494 LGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQI 529



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 35  QQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           + LQ  KH      V   I ++ F  + F    LI  Y R +  + A Q+F  M + N++
Sbjct: 275 ETLQHGKH------VRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLI 328

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           ++++++  + + G    AL  F+ M    + PN  TF +++   +  + L    +IH  I
Sbjct: 329 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLI 388

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              G      + ++LV++YG+C   D AR VFD +   N++SW S+I  + Q  +  +AL
Sbjct: 389 TEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDAL 448

Query: 215 EMFREFNYQSRDRPNQHMLASVINAC--ASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           ++FR    Q   +P++    +++ AC   S GR  + K+ H  V  SG   + +V ++LV
Sbjct: 449 QLFRTMQQQG-IQPDRVNFMTILGACTIGSHGR--TRKLVHQCVEESGLGGSPLVQTSLV 505

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           +MYAK G ++ ++ +   +    +  +  +I G A +G  R +L+ + ++    I  + V
Sbjct: 506 NMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKV 565

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ VL+AC+ S  + EG + + S   + G+  D      + +M  + G ++ A ++  S
Sbjct: 566 TFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDS 624

Query: 393 IQVDPDGGPLLWGTLLSASRLHG 415
           +   P    + W  +L A   HG
Sbjct: 625 M---PIRSAVSWNGMLQAYAQHG 644



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 158/345 (45%), Gaps = 6/345 (1%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y R      A   F ++   NVVS+  +++ Y +    Q AL LF  ML   V PN  T 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
             V+ +C    +L  G  +H      GF  N +V ++L++MYGKC  +  A+ VF+ M  
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 192 RNVVSWTSII-VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
           +NVV+W +++ V   Q      A+E+F     +   + N     +V+N+      L  GK
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGV-KANVITFLNVLNSVVDPDALRKGK 180

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  V  S    +  V +ALV+ Y KCGS+  + KVF+ +   SV T+ SMI   +   
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
               +  +F  M   G + + VTF+ +L AC +   +  G +H+     +     D    
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHG-KHVRESISETSFELDLFVG 299

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           T ++ M  R    ++A ++   ++       + W  +++A   HG
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMK---QTNLITWSAIITAFADHG 341



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY +C  +  A   F  +  RNVVSW  +I A++      EAL +F     +    PN  
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGV-APNAI 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
            L +V+N+C S   L  G + H + +  G   N +VA+AL++MY KCG++  +  VF  +
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 292 SNPSVVTYTSMI-VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +  +VVT+ +M+ V + +    + +++LF  M+  G+K N +TF+ VL++      + +G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            + + S  R+     D    T +V+   + G L +A K+   +     G    W +++SA
Sbjct: 180 -KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVG---TWNSMISA 235

Query: 411 SRLHGR 416
             +  R
Sbjct: 236 YSISER 241


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 317/556 (57%), Gaps = 13/556 (2%)

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           F S+ F    LI  Y  L     ARQ+FDE    N+  + +L+           AL    
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163

Query: 118 KMLGNLVWP-NEFTFATVIKAC-----SMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
            M G L  P + +++   +KAC     S        +++H H    G+  +  V ++L+D
Sbjct: 164 DM-GRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLID 222

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR-PNQ 230
            Y K   V  A  VF  M  RNVVSW+++I  +A+N +  +A+E+F++      D  PN 
Sbjct: 223 CYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNS 282

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             + SV+NACA +  L  GK+ H  ++R G +    V +AL+ MY +CG +     +F  
Sbjct: 283 ITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKW 342

Query: 291 ISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
           I +   VV++ S+I G   +G G  ++ +F EMI  G  P+ +TF+ VL ACSH+GLV+E
Sbjct: 343 IGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNE 402

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G    +SM  +YG+ P A+HY C+VD+LGR G+LDEA +L +S+ ++P   P +WG LL 
Sbjct: 403 GKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPS--PQVWGALLG 459

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A R+HG V+ A  A + L +   + A  YV L++ YA A     V  L+  ++   + K 
Sbjct: 460 ACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKV 519

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
            GCSW+E++ + ++F + +       ++ +L+ E   +MK +GYV   TG+V  D+E E 
Sbjct: 520 TGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVP-DTGIVLYDIEGEE 578

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +E I+  HSE+LA+AFGLI+   G  IRI KNLR+C DCH V K IS   ER+ VVRDVN
Sbjct: 579 KERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVN 638

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHFR+G CSCGD+W
Sbjct: 639 RFHHFRDGVCSCGDYW 654



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+  ++ G+  +T     LI+CY +L   + A  +F  M E NVVS+++++  Y    +
Sbjct: 201 VHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNER 260

Query: 109 PQIALLLFQKML---GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           P  A+ LF+ M+    +LV PN  T  +V+ AC+ +  L  GK +H +I   GF   + V
Sbjct: 261 PADAIELFKDMMASDADLV-PNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSV 319

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
            ++L+ MY +C  ++  R +F  +G  R+VVSW S+I  +  +  G EA+++F E  +  
Sbjct: 320 LNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVG 379

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
              P+     SV+ AC+  G +  GK+    +V  G        + +VD+  + G ++
Sbjct: 380 FS-PSIITFISVLGACSHAGLVNEGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQLD 436


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 319/567 (56%), Gaps = 15/567 (2%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  VH+ ++ +G+  +   L  LI      +       LF  +  P+   + S++     
Sbjct: 25  LQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSK 84

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           +  P   +  +++ML + V P+ +TF +VIK+C+ L+ L  GK +H H    GF  +  V
Sbjct: 85  LRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYV 144

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LV  Y KC D++GAR+VFD M  +++V+W S++    QN    EA+++F    YQ R
Sbjct: 145 QAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVF----YQMR 200

Query: 226 D---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +    P+     S+++ACA  G +  G   H  ++  G + N  + +AL+++Y++CG V 
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVG 260

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHAC 341
            + +VF+++   +V  +T+MI     +G G+ +++LFN+M    G  PN+VTFV VL AC
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSAC 320

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG-- 399
           +H+GLV+EG      M + Y +IP  +H+ C+VDMLGR G LDEAYK     Q+D  G  
Sbjct: 321 AHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIH--QLDATGKA 378

Query: 400 -GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
             P LW  +L A ++H   D+ VE + +LI         +V LSN YAL+G+ + V  +R
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIR 438

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             M R  + K+ G S +E+ ++TY F  G+   +   E+   L  L  + KE GY    +
Sbjct: 439 DGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGY-APVS 497

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V   VE+E +E  +  HSE+LA+AFGL+     + I I+KNLR+C DCH  FK IS +
Sbjct: 498 EEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIV 556

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
             R   VRD  RFHHF+NGSCSC D+W
Sbjct: 557 SNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 149/295 (50%), Gaps = 19/295 (6%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   ++ C  L +L     VH   + SGF  +T+    L+  Y +    + ARQ+FD M 
Sbjct: 110 FTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMP 169

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E ++V++ SL++G+   G    A+ +F +M  +   P+  TF +++ AC+    +  G  
Sbjct: 170 EKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSW 229

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H +I + G   N+ + ++L+++Y +C DV  AR VFD M   NV +WT++I A+  +  
Sbjct: 230 VHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-----GCEFN 264
           G +A+E+F +        PN     +V++ACA  G +  G+  +  + +S     G E +
Sbjct: 290 GQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHH 349

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM---IVGAAK----YGLG 312
                 +VDM  + G ++ + K  +++      T  ++   ++GA K    Y LG
Sbjct: 350 ----VCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLG 400


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 331/562 (58%), Gaps = 16/562 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINM 106
           +H  ++K+G+         L+  Y +      A +LF  M +   NVV++T+++ G++  
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAHNVVTWTAMIGGFVQN 386

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVI--KACSMLADLITGKQIHTHIETFGFQYNLV 164
              + A+ LF +M    V PN FT++TV+  K  S+L+      Q+H  I    ++    
Sbjct: 387 NNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS------QLHAQIIKAYYEKVPS 440

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+D Y K  +V  + RVF  +  +++V+W++++   AQ     +A+E+F +   + 
Sbjct: 441 VATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQL-VKE 499

Query: 225 RDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
             +PN++  +SVINAC+S    V  GK  H   V+SG      V+SAL+ MY+K G++  
Sbjct: 500 GVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIES 559

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           ++KVF R     +V++ SMI G  ++G  + +L++F  M ++G+  +DVTF+GVL AC+H
Sbjct: 560 AEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTH 619

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +GLV+EG ++ + M + Y I    +HY+C+VD+  R G  D+A  +   +       P +
Sbjct: 620 AGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFP--ASPTI 677

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W TLL+A R+H  +++   A+ +L+      A  YV LSN +A+AG WE    +R  M  
Sbjct: 678 WRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDE 737

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             + KE GCSW+EI+++ ++F AG+        V + L EL  K+K+ GY    T  VF 
Sbjct: 738 RKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGY-QPDTNYVFH 796

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DVE+E +E I+  HSERLA+A+GLI++P G  I+I KNLR+C DCH+V +LIS I ER  
Sbjct: 797 DVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTL 856

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           +VRD NRFHHF+ G CSCG +W
Sbjct: 857 IVRDSNRFHHFKGGVCSCGGYW 878



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 192/382 (50%), Gaps = 10/382 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH + LKSGFL +      L++ Y++ +  +  R +FDEM   NVVS+TSL++GY   G 
Sbjct: 126 VHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               + L  +M    V PN FTFATV+ A +  + +  G Q+H  I   GF++   VC++
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNA 245

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY K   V  A  VFD M  R+ V+W  +I  +A      E  +MF         + 
Sbjct: 246 LICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV-KL 304

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++ +  + +  C+    L   K  H  VV++G EF   + +AL+  Y+KC SV+ + K+F
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLF 364

Query: 289 NRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           +      +VVT+T+MI G  +    + ++DLF +M   G++PN  T+  VL     S L 
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS 424

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
               Q + + Y K   +P     T ++D   +TG + E+ ++  SI   P    + W  +
Sbjct: 425 QLHAQIIKAYYEK---VPSVA--TALLDAYVKTGNVVESARVFYSI---PAKDIVAWSAM 476

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           L+        + A+E   QL++
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVK 498



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 152/314 (48%), Gaps = 4/314 (1%)

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
           + + A QLFDE    ++  Y  L+  +      + AL LF+ +  + +  +  T +  +K
Sbjct: 53  RPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALK 112

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
            C +L D + G+Q+H      GF  ++ V +SLVDMY K  D +  R +FD MG +NVVS
Sbjct: 113 VCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVS 172

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WTS++  +A+N    E + +  +   +  + PN    A+V+ A A    +  G   H ++
Sbjct: 173 WTSLLSGYARNGLNDEVIHLINQMQMEGVN-PNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           V++G EF   V +AL+ MY K   V  ++ VF+ +     VT+  MI G A  G      
Sbjct: 232 VKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGF 291

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVD 375
            +F+ M   G+K +   F   L  CS    ++   Q H   +   Y    D +  T ++ 
Sbjct: 292 QMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR--TALMV 349

Query: 376 MLGRTGRLDEAYKL 389
              +   +DEA+KL
Sbjct: 350 TYSKCSSVDEAFKL 363



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 148/292 (50%), Gaps = 12/292 (4%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L+ +H++I+K+ +         L++ YV+      + ++F  +   ++V++++++ G   
Sbjct: 423 LSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLV 164
               + A+ +F +++   V PNE+TF++VI ACS  A  +  GKQIH      G    L 
Sbjct: 483 TRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC 542

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V S+L+ MY K  +++ A +VF     R++VSW S+I  + Q+    +ALE+F+    Q 
Sbjct: 543 VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQG 602

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNY 283
               +   +  V+ AC   G +  G+    ++++    +      S +VD+Y++ G  + 
Sbjct: 603 LPLDDVTFIG-VLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDK 661

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAK----YGLGRFSLDLFNEMISRGIKPND 331
           +  + N +  P+  T    ++ A +      LG+ + +   +++S  ++PND
Sbjct: 662 AMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAE---KLVS--LQPND 708


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 314/557 (56%), Gaps = 4/557 (0%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H+  LK    +N   L  L++ Y +      A+++FDEM  P+ V +T+L+  Y++ G 
Sbjct: 572  LHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 631

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             + A+ + +    N + P+ FT   V+ AC+ +ADL TG+ +    E  G   ++ V ++
Sbjct: 632  LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATA 691

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
             VD+Y KC ++  AR VFD M  ++ V+W +++  +A N    EAL++F     +   +P
Sbjct: 692  AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KP 750

Query: 229  NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            + + +A  ++AC  LG L  G+ A  +V       N V+ +AL+DMYAKCGS   +  VF
Sbjct: 751  DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 810

Query: 289  NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             ++    ++ + +MI+G    G  + +  L  +M   G+K ND TF+G+L +C+H+GL+ 
Sbjct: 811  QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 870

Query: 349  EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            +G ++  +M + Y I P  +HY C+VD+L R G L EA++L   + +  +   ++ G LL
Sbjct: 871  DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA--VILGALL 928

Query: 409  SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
               ++H   ++A     QLI      +  YV LSN Y+  G WE+   LR +MK  G+ K
Sbjct: 929  GGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK 988

Query: 469  EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
             P CSWVE   + + F  G+       ++   L EL  +MK  GY    T +V  DVEDE
Sbjct: 989  VPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGY-EPTTEVVMFDVEDE 1047

Query: 529  AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +E  +  HSE+LA+AF L+    G TIR+ KNLR+C DCH   KL+S I  R+ +VRD 
Sbjct: 1048 EKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDN 1107

Query: 589  NRFHHFRNGSCSCGDFW 605
            NRFH FR+GSCSC D+W
Sbjct: 1108 NRFHCFRDGSCSCNDYW 1124



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 6/310 (1%)

Query: 126 PNEFTFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           P+  T    +K+ S L   L  G+Q+H          N  V +SL+ +Y KC  +  A+R
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M   + V WT++I A+       EA+ + R   + +  RP+      V+ ACA + 
Sbjct: 607 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARN-AFANGMRPDSFTAVRVLTACARIA 665

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L +G+       + G   +  VA+A VD+Y KCG +  + +VF+++ +   V + +M+ 
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 725

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A  G  R +LDLF  M + G+KP+     G L AC+  G +D G Q +  M      +
Sbjct: 726 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 784

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            +    T ++DM  + G   EA+ + + ++       ++W  ++    + G   IA    
Sbjct: 785 DNPVLGTALIDMYAKCGSTVEAWVVFQQMR---KKDIIVWNAMILGLGMTGHEKIAFALV 841

Query: 425 NQLIESNQQV 434
            Q+ +S  ++
Sbjct: 842 GQMEKSGVKL 851


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 324/557 (58%), Gaps = 6/557 (1%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H   LK G +S+ F  N L+  Y        A ++ D++   ++  ++S ++GY+  G  
Sbjct: 159 HGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAF 218

Query: 110 QIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           +  L + +K    + VW N  T+ + ++  S L DL    Q+H+ +  FGF   +  C +
Sbjct: 219 KEGLDVLRKTANEDFVW-NNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGA 277

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MYGKC  V  A+RVFD    +N+   T+I+ A+ Q+    EAL +F + + +    P
Sbjct: 278 LINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVP-P 336

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N++  A ++N+ A L  L  G + HG+V++SG   + +V +ALV+MYAK GS+  + K F
Sbjct: 337 NEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAF 396

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++   +VT+ +MI G + +GLGR +L+ F+ MI  G  PN +TF+GVL ACSH G V+
Sbjct: 397 SGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVE 456

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+ + + + +K+ + PD +HYTC+V +L + G   +A    ++  ++ D   + W TLL
Sbjct: 457 QGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWD--VVAWRTLL 514

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A  +     +  + +   IE     +  YV LSN +A + EWE V  +RS M   G+ K
Sbjct: 515 NACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKK 574

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+ IR+QT+ F A +      + + + ++E+  K+K  GY     G  F DV++E
Sbjct: 575 EPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAG-AFHDVDEE 633

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            RE+ +  HSE+LA+A+GLI  P+   + + KN+R+C DCH   KLIS I +R  V+RD 
Sbjct: 634 QREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDS 693

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF +G CSC D+W
Sbjct: 694 NRFHHFLDGQCSCCDYW 710



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 194/389 (49%), Gaps = 17/389 (4%)

Query: 48  SVHSEIL---KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           S+H+ ++   +S    + + +N LIN YV+ ++T  AR+LFD M E NVVS+ ++M GY 
Sbjct: 52  SIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQ 111

Query: 105 NMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           N G     L LF+ M       PNEF    V K+CS    +  GKQ H     +G   + 
Sbjct: 112 NSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHE 171

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V ++LV MY  C+    A RV D +   ++  ++S +  + +     E L++ R+   +
Sbjct: 172 FVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANE 231

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
                N   L+S +   ++L  L      H  +VR G         AL++MY KCG V Y
Sbjct: 232 DFVWNNLTYLSS-LRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLY 290

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + +VF+     ++   T+++    +      +L+LF++M ++ + PN+ TF  +L++ + 
Sbjct: 291 AQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAE 350

Query: 344 SGLVDEG-IQH---LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
             L+ +G + H   L S YR + ++ +A     +V+M  ++G +++A K    +      
Sbjct: 351 LSLLKQGDLLHGLVLKSGYRNHVMVGNA-----LVNMYAKSGSIEDARKAFSGMTFR--- 402

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLI 428
             + W T++S    HG    A+EA +++I
Sbjct: 403 DIVTWNTMISGCSHHGLGREALEAFDRMI 431



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 108/201 (53%), Gaps = 1/201 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS +++ GF +       LIN Y +  K   A+++FD+    N+   T++M  Y     
Sbjct: 259 VHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKS 318

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF KM    V PNE+TFA ++ + + L+ L  G  +H  +   G++ +++V ++
Sbjct: 319 FEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNA 378

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV+MY K   ++ AR+ F  M  R++V+W ++I   + +  G EALE F    +   + P
Sbjct: 379 LVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTG-EIP 437

Query: 229 NQHMLASVINACASLGRLVSG 249
           N+     V+ AC+ +G +  G
Sbjct: 438 NRITFIGVLQACSHIGFVEQG 458



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 128/258 (49%), Gaps = 14/258 (5%)

Query: 134 VIKACSMLADLITGKQIHTHI--------ETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           ++K C+  + L  G+ IH H+            +Q N     SL+++Y KC +   AR++
Sbjct: 37  LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQIN-----SLINLYVKCRETVRARKL 91

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FDLM  RNVVSW +++  +  +    E L++F+   +    RPN+ +   V  +C++ GR
Sbjct: 92  FDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGR 151

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           +  GK  HG  ++ G   ++ V + LV MY+ C     + +V + +    +  ++S + G
Sbjct: 152 IEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSG 211

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
             + G  +  LD+  +  +     N++T++  L   S+   ++  +Q    M R +G   
Sbjct: 212 YLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVR-FGFNA 270

Query: 366 DAKHYTCVVDMLGRTGRL 383
           + +    +++M G+ G++
Sbjct: 271 EVEACGALINMYGKCGKV 288



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +T A  +  + E   L     +H  +LKSG+ ++    N L+N Y +    + AR+ F  
Sbjct: 339 YTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSG 398

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M   ++V++ ++++G  + G  + AL  F +M+     PN  TF  V++ACS +  +  G
Sbjct: 399 MTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQG 458

Query: 148 KQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
                 + + F  Q ++   + +V +  K      A           +VV+W +++ A
Sbjct: 459 LHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNA 516


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 317/563 (56%), Gaps = 44/563 (7%)

Query: 44  ISLASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           +  AS+H+  LKSGF + + F    L+  Y +  +  +AR  FDE    +V     ++A 
Sbjct: 56  LGAASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAA 115

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y+  G+   A  +F  M                                        + +
Sbjct: 116 YVTRGEVAEARRVFDGMR---------------------------------------ERD 136

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           +V  ++++  Y    +VD AR VF+ M  R+  SW+S++ A+ +  +  +ALE++RE   
Sbjct: 137 MVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRA 196

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
              + P+   + SV++AC+ +G L  G   H  V  +G E +  + +AL+DMYAKCG + 
Sbjct: 197 ACVN-PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIE 255

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            S +VF+ +    V+T++SMI+G A +G G  +L LF+ M+S G++PN+VTF+GVL +C+
Sbjct: 256 NSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCT 315

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H GLV +G ++  SM   +G+ P  +HY C+VD+LGR+G ++EA +L + +  +PD   +
Sbjct: 316 HLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDA--V 373

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A R++  V++A EA  +L   +      YV LSN YA A  WE V  +R  ++
Sbjct: 374 IWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLR 433

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
           R  I + PG S +E ++  + F +G+    R  E+  +L E+  ++++ GY    TGLV 
Sbjct: 434 RERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGY-KPMTGLVL 492

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D++++++E  +  HSE+LA+AFGL++ P G T+RI KNLR C DCH   KLI+ + ER 
Sbjct: 493 QDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERK 552

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            ++RD NRFHHF  G CSC D+W
Sbjct: 553 LIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 2/179 (1%)

Query: 27  CHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           C T    +    +   L   A VH  +  +G   +      LI+ Y +    + + ++F 
Sbjct: 203 CTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFH 262

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            M   +V++++S++ G  N G    AL LF +ML   + PNE TF  V+ +C+ L  +  
Sbjct: 263 SMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSD 322

Query: 147 GKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVF-DLMGCRNVVSWTSIIVA 203
           GK+  + +    G    +     +VD+ G+   ++ A+++  D+    + V W +++ A
Sbjct: 323 GKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 319/541 (58%), Gaps = 17/541 (3%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +++ Y +  +   AR LFDEM + NVVS+T++++GY   G+  +A  LF+ M       N
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----N 235

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCNDVDGARRV 185
           E ++       +ML   I    +    E F    ++ +  C++++  +G+   VD A+ V
Sbjct: 236 EVSWT------AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ M  R+  +W+++I A+ QN    EAL  FRE  ++   RPN   + S++  CA+L  
Sbjct: 290 FEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV-RPNYPSVISILTVCAALAV 348

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  G+  H  ++R   + +    SAL+ MY KCG+++ + +VF+      +V + SMI G
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A++GLG  +L +F++M   G+ P+ +T++G L ACS++G V EG +  +SM     I P
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A+HY+C+VD+LGR+G ++EA+ L K++ V+PD   ++WG L+ A R+H   +IA  A+ 
Sbjct: 469 GAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDA--VIWGALMGACRMHRNAEIAEFAAK 526

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +L+E     A  YV LS+ Y   G WE+   +R  +    ++K PGCSW+E   + + F 
Sbjct: 527 KLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFT 586

Query: 486 AGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
           +G+ L     + +L +L +L+  + E GY       V  D+++E +   +  HSER A+A
Sbjct: 587 SGDVLAHPEHAAILRILEKLDGLLMESGY-SADGSFVLHDIDEEQKSHSLRYHSERQAVA 645

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           +GL+ IP+G+ IR+MKNLR+C DCH   KLI+ I  R+ ++RD NRFHHF++G CSC D+
Sbjct: 646 YGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDY 705

Query: 605 W 605
           W
Sbjct: 706 W 706



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 155/331 (46%), Gaps = 29/331 (8%)

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
             P+VVS+TSL+ GY+  G    A+ LFQ+M       N  ++        +L  L+   
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTV------LLGGLLDAG 157

Query: 149 QIHTHIETFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           +++     F      ++V  ++++  Y +   +  AR +FD M  RNVVSWT++I  +AQ
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N + + A ++F E   +  +     ML   I A         G V     + +    + V
Sbjct: 218 NGEVNLARKLF-EVMPERNEVSWTAMLVGYIQA---------GHVEDAAELFNAMPEHPV 267

Query: 267 VA-SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            A +A++  + + G V+ +  VF ++      T+++MI    +      +L  F EM+ R
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVVDMLGRTGRLD 384
           G++PN  + + +L  C+   ++D G +   +M R  + +  D    + ++ M  + G LD
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIKCGNLD 385

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +A ++  + +       ++W ++++    HG
Sbjct: 386 KAKRVFHTFE---PKDIVMWNSMITGYAQHG 413



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 120/289 (41%), Gaps = 53/289 (18%)

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            +  +++GAR  F+ M  R   S+ +++  + +N     AL +FR     SRD       
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM--PSRD------- 78

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
                  AS   L+S     G+ +R            L D  A   S+ +          
Sbjct: 79  ------LASYNALIS-----GLSLRR---------QTLPDAAAALASIPFP--------- 109

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
           PSVV++TS++ G  ++GL   ++ LF +M  R    N V++  +L     +G V+E  + 
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            D M  +     D   +T ++    + GR+ EA  L   +   P    + W  ++S    
Sbjct: 166 FDEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEM---PKRNVVSWTAMISGYAQ 217

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +G V++A +    + E N+    ++  +   Y  AG  E+   L + M 
Sbjct: 218 NGEVNLARKLFEVMPERNEV---SWTAMLVGYIQAGHVEDAAELFNAMP 263



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M K+  +N     A S+      R         I  L  C  L  L     VH+ +L+  
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           F  + F ++ LI  Y++      A+++F      ++V + S++ GY   G  + AL +F 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQI------HTHIETFGFQYNLVVCSSLVD 171
            M    + P+  T+   + ACS    +  G++I      ++ I      Y     S +VD
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY-----SCMVD 478

Query: 172 MYGKCNDVDGARRVFDLM 189
           + G+   V+ A   FDL+
Sbjct: 479 LLGRSGLVEEA---FDLI 493


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 299/507 (58%), Gaps = 4/507 (0%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           +M GYI     + AL LF  +  +    ++ T AT  KAC  L  L  GKQIH H    G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F  +L V S ++DMY KC D+  A  VF+ +   + V+WTS+I     N    +AL ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
               QSR  P+++  A++I A + +  L  G+  H  V++  C  +  V ++LVDMYAKC
Sbjct: 121 RMR-QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKC 179

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G++  + ++F +++  ++  + +M+VG A++G    +++LF  M S GI+P+ V+F+G+L
Sbjct: 180 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGIL 239

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACSH+GL  E  ++L SM   YGI P+ +HY+C+VD LGR G + EA K+ +++     
Sbjct: 240 SACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKAS 299

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +   LL A R+ G V+     + +L       + AYV LSN YA A  W++V   R
Sbjct: 300 AS--INRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDAR 357

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MKR  + K+PG SW+++++  + F   +    +   +   + E+ + ++E GYV   T
Sbjct: 358 KMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV-PDT 416

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V +DVEDE +E  +  HSE+LA+A+GLIS P   TIR++KNLR+C DCH+  K IS +
Sbjct: 417 EFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKV 476

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            ER+ V+RD NRFHHFR+G CSCGD+W
Sbjct: 477 FEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 137/261 (52%), Gaps = 2/261 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  +K+GF S+    + +++ Y++      A  +F+ +  P+ V++TS+++G ++ G 
Sbjct: 52  IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGN 111

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL ++ +M  + V P+E+TFAT+IKA S +  L  G+Q+H ++       +  V +S
Sbjct: 112 EDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTS 171

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC +++ A R+F  M  RN+  W +++V  AQ+    EA+ +F+       + P
Sbjct: 172 LVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE-P 230

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           ++     +++AC+  G      +  H +    G E      S LVD   + G V  +DKV
Sbjct: 231 DRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKV 290

Query: 288 FNRISNPSVVTYTSMIVGAAK 308
              +   +  +    ++GA +
Sbjct: 291 IETMPFKASASINRALLGACR 311


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 331/562 (58%), Gaps = 16/562 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINM 106
           +H  ++K+G+         L+  Y +      A +LF  M +   NVV++T+++ G++  
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAHNVVTWTAMIGGFVQN 386

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVI--KACSMLADLITGKQIHTHIETFGFQYNLV 164
              + A+ LF +M    V PN FT++TV+  K  S+L+      Q+H  I    ++    
Sbjct: 387 NNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS------QLHAQIIKAYYEKVPS 440

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+D Y K  +V  + RVF  +  +++V+W++++   AQ     +A+E+F +   + 
Sbjct: 441 VATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQL-VKE 499

Query: 225 RDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
             +PN++  +SVINAC+S    V  GK  H   V+SG      V+SAL+ MY+K G++  
Sbjct: 500 GVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIES 559

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           ++KVF R     +V++ SMI G  ++G  + +L++F  M ++G+  +DVTF+GVL AC+H
Sbjct: 560 AEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTH 619

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +GLV+EG ++ + M + Y I    +HY+C+VD+  R G  D+A  +   +       P +
Sbjct: 620 AGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFP--ASPTI 677

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W TLL+A R+H  +++   A+ +L+      A  YV LSN +A+AG WE    +R  M  
Sbjct: 678 WRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDE 737

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             + KE GCSW+EI+++ ++F AG+        V + L EL  K+K+ GY    T  VF 
Sbjct: 738 RKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGY-QPDTNYVFH 796

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DVE+E +E I+  HSERLA+A+GLI++P G  I+I KNLR+C DCH+V +LIS I ER  
Sbjct: 797 DVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTL 856

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           +VRD NRFHHF+ G CSCG +W
Sbjct: 857 IVRDSNRFHHFKGGVCSCGGYW 878



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 191/382 (50%), Gaps = 10/382 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH + LKSGFL +      L++ Y++ +  +  R +FDEM   NVVS+TSL++GY   G 
Sbjct: 126 VHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               + L  +M    V PN FTFATV+ A +  + +  G Q+H  I   GF++   VC++
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNA 245

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY K   V  A  VFD M  R+ V+W  +I  +A      E  +MF         + 
Sbjct: 246 LICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV-KL 304

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++ +  + +  C+    L   K  H  VV++G EF   + +AL+  Y+KC SV+ + K+F
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLF 364

Query: 289 NRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           +      +VVT+T+MI G  +      ++DLF +M   G++PN  T+  VL     S L 
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS 424

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
               Q + + Y K   +P     T ++D   +TG + E+ ++  SI   P    + W  +
Sbjct: 425 QLHAQIIKAYYEK---VPSVA--TALLDAYVKTGNVVESARVFYSI---PAKDIVAWSAM 476

Query: 408 LSASRLHGRVDIAVEASNQLIE 429
           L+        + A+E   QL++
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVK 498



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 152/314 (48%), Gaps = 4/314 (1%)

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
           + + A QLFDE    ++  Y  L+  +      + AL LF+ +  + +  +  T +  +K
Sbjct: 53  RPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALK 112

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
            C +L D + G+Q+H      GF  ++ V +SLVDMY K  D +  R +FD MG +NVVS
Sbjct: 113 VCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVS 172

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WTS++  +A+N    E + +  +   +  + PN    A+V+ A A    +  G   H ++
Sbjct: 173 WTSLLSGYARNGLNDEVIHLINQMQMEGVN-PNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           V++G EF   V +AL+ MY K   V  ++ VF+ +     VT+  MI G A  G      
Sbjct: 232 VKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGF 291

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVD 375
            +F+ M   G+K +   F   L  CS    ++   Q H   +   Y    D +  T ++ 
Sbjct: 292 QMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR--TALMV 349

Query: 376 MLGRTGRLDEAYKL 389
              +   +DEA+KL
Sbjct: 350 TYSKCSSVDEAFKL 363



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 149/293 (50%), Gaps = 14/293 (4%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L+ +H++I+K+ +         L++ YV+      + ++F  +   ++V++++++ G   
Sbjct: 423 LSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLV 164
               + A+ +F +++   V PNE+TF++VI ACS  A  +  GKQIH      G    L 
Sbjct: 483 TRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC 542

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V S+L+ MY K  +++ A +VF     R++VSW S+I  + Q+    +ALE+F+    Q 
Sbjct: 543 VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQG 602

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA--SALVDMYAKCGSVN 282
               +   +  V+ AC   G +  G+    ++++     +  +   S +VD+Y++ G  +
Sbjct: 603 LPLDDVTFIG-VLTACTHAGLVEEGEKYFNIMIKD-YHIDKKIEHYSCMVDLYSRAGMFD 660

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAK----YGLGRFSLDLFNEMISRGIKPND 331
            +  + N +  P+  T    ++ A +      LG+ + +   +++S  ++PND
Sbjct: 661 KAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAE---KLVS--LQPND 708


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/627 (32%), Positives = 339/627 (54%), Gaps = 79/627 (12%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKT----QVARQLFDEMLEPN------------- 92
           H+  LKSG    T   N L++ Y R   +      AR++FD++ E +             
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVK 231

Query: 93  -------------------VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
                              +V+Y ++++GY+N G  Q AL + ++M+ + +  +EFT+ +
Sbjct: 232 NGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 134 VIKACSMLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           VI+AC+    L  GKQ+H ++   E F F ++    +SLV +Y KC   + AR +F+ M 
Sbjct: 292 VIRACANARLLQLGKQVHAYVLRREDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMP 347

Query: 191 CRNVVSWTSIIVAH-------------------------------AQNAQGHEALEMFRE 219
            +++VSW +++  +                               A+N  G E L++F  
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
              +  + P  +  +  I +CA LG   +G+  H  +V+ G + +    +AL+ MYAKCG
Sbjct: 408 MKREGFE-PCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCG 466

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            V  + +VF  +     V++ ++I    ++G G  ++D++ EM+ +GI+P+ +TF+ VL 
Sbjct: 467 VVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLT 526

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACSH+GLVD+G ++ +SM   Y I P A HY  ++D+L R+G+  EA  + +S+   P  
Sbjct: 527 ACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTA 586

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
              +W  LLS  R+HG +++ + A+++L     +    Y+ LSN YA  G+WE V  +R 
Sbjct: 587 E--IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRK 644

Query: 460 EMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTG 519
            M+  G+ KE  CSW+E+  Q + F   +        V   L++L ++M+  GYV   T 
Sbjct: 645 LMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVP-DTS 703

Query: 520 LVFVDVE-DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
            V  DVE D  +E+++  HSE++A+AFGL+ +P G TIRI KNLR C DCH+ F+ +S +
Sbjct: 704 FVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKV 763

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
           V+RD ++RD  RFHHFRNG CSCG+FW
Sbjct: 764 VQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 196/483 (40%), Gaps = 107/483 (22%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH  I+  GF  +   LN LI+ Y +  +   ARQLFDE+ EP+ ++ T++++GY   G
Sbjct: 35  AVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASG 94

Query: 108 QPQIA---------------------------------LLLFQKMLGNLVWPNEFTFATV 134
              +A                                 + LF KM      P++FT+A+V
Sbjct: 95  DIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASV 154

Query: 135 IKACSMLAD-LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND----VDGARRVFDLM 189
           +   +++ D      Q H      G  Y   V ++LV +Y +C      +  AR+VFD +
Sbjct: 155 LAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDI 214

Query: 190 GCRNVVSWTSIIVAHAQNA---------QG-----------------------HEALEMF 217
             ++  SWT+++  + +N          +G                        EALEM 
Sbjct: 215 PEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMV 274

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           R     S    ++    SVI ACA+   L  GK  H  V+R   +F+    ++LV +Y K
Sbjct: 275 RRM-VSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYK 332

Query: 278 CGSVNYSDKVFNRISNPSVVTYTS-------------------------------MIVGA 306
           CG  N +  +F ++    +V++ +                               MI G 
Sbjct: 333 CGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGL 392

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A+ G G   L LF+ M   G +P D  F G + +C+  G    G Q   +   K G    
Sbjct: 393 AENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-QQFHAQLVKIGFDSS 451

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
                 ++ M  + G ++EA ++ +++   P    + W  L++A   HG    AV+   +
Sbjct: 452 LSAGNALITMYAKCGVVEEAQQVFRTM---PCLDSVSWNALIAALGQHGHGVEAVDVYEE 508

Query: 427 LIE 429
           +++
Sbjct: 509 MLK 511



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 176/416 (42%), Gaps = 91/416 (21%)

Query: 131 FATVIKACSML--ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD- 187
           +A  ++ C  L    L   + +H +I TFGFQ +  + + L+D+Y K +++D AR++FD 
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDE 74

Query: 188 --------------------------------LMGCRNVVSWTSIIVAHAQNAQGHEALE 215
                                            +  R+ V + ++I   + N  G+ A+ 
Sbjct: 75  ISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA----HGVVVRSGCEFNDVVASAL 271
           +F +  ++   +P+    ASV+   A L  +V  +      H   ++SG  +   V++AL
Sbjct: 135 LFCKMKHEGF-KPDDFTYASVL---AGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNAL 190

Query: 272 VDMYAKCGS----VNYSDKVFNRIS--------------------------------NPS 295
           V +Y++C S    ++ + KVF+ I                                 N  
Sbjct: 191 VSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMK 250

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           +V Y +MI G    GL + +L++   M+S GI+ ++ T+  V+ AC+++ L+  G Q   
Sbjct: 251 LVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHA 310

Query: 356 SMYRKYGIIPDAKHY-TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            + R+      + H+   +V +  + G+ +EA  + + +   P    + W  LLS     
Sbjct: 311 YVLRREDF---SFHFDNSLVTLYYKCGKFNEARAIFEKM---PAKDLVSWNALLSGYVSS 364

Query: 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
           G +    EA     E  ++   +++ + +  A  G  E    L S MKR G   EP
Sbjct: 365 GHIG---EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF--EP 415



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 113/287 (39%), Gaps = 53/287 (18%)

Query: 227 RPNQHMLASVINA-------CASLGR--LVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +PN  ++ ++ N        C  L R  L   +  HG ++  G + +  + + L+D+Y K
Sbjct: 2   QPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCK 61

Query: 278 CGSVNYSDKVFNRISNPS---------------------------------VVTYTSMIV 304
              ++Y+ ++F+ IS P                                   V Y +MI 
Sbjct: 62  SSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMIT 121

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ----HLDSMYRK 360
           G +    G  +++LF +M   G KP+D T+  VL   +   +VD+  Q    H  ++   
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLAL--VVDDEKQCVQFHAAALKSG 179

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD-PDGGPLLWGTLLSASRLHGRVDI 419
            G +    +   +V +  R          A+ +  D P+     W T+++    +G  D+
Sbjct: 180 AGYVTSVSN--ALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDL 237

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
             E    + E+ + V  AY  + + Y   G ++    +   M  +GI
Sbjct: 238 GKELLKGMDENMKLV--AYNAMISGYVNCGLYQEALEMVRRMVSSGI 282


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/565 (35%), Positives = 329/565 (58%), Gaps = 19/565 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY---- 103
           +VH  ++K+G  S+ F ++ +I+ Y +      A  LF  + EPNVV + +++AG+    
Sbjct: 233 AVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTE 292

Query: 104 --INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
             I       AL L+ ++    + P EFTF++V++AC++   L  GKQIH  +  + FQ 
Sbjct: 293 TVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQE 352

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + S+L+D+Y     ++   R F      ++V+WT+++    QN    +AL +F E +
Sbjct: 353 DDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHE-S 411

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             +  +P+   ++SV+NACASL    +G+       +SG +   V+ ++ V MYA+ G V
Sbjct: 412 LGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDV 471

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + + F  + +  VV+++++I   A++G  R +L  F+EM+   + PN++TF+GVL AC
Sbjct: 472 DAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTAC 531

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH GLVDEG+++ ++M + YG+ P  KH TCVVD+LGR GRL +A     +     D  P
Sbjct: 532 SHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHAD--P 589

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W +LL++ R+H  ++     +N+++E     + +YV L N Y  AGE       R  M
Sbjct: 590 VIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLM 649

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K+ G+ KEPG SW+E++   ++F AG+      S + + L E+  ++++         L 
Sbjct: 650 KQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEK---------LA 700

Query: 522 FVDVEDEAREE-IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
             D E   RE+ ++  HSE+LA+A G+I +P+   IR+MKNLR+CRDCH   KLIS    
Sbjct: 701 TTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSEN 760

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ ++RD  RFHHFR+GSCSC D+W
Sbjct: 761 REIILRDPIRFHHFRDGSCSCADYW 785



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 193/389 (49%), Gaps = 17/389 (4%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           A ++  L+ C  L   A+VH+ I ++   ++ F  N L+  Y RL     AR+L DEM  
Sbjct: 12  AFYLHLLRACTSLRHAAAVHAHIARAHPAASLFLRNTLLAAYCRLGGPLPARRLLDEMPR 71

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N VS+  L+  Y   G   ++L    +     V  + F++A  + ACS    L  G+ +
Sbjct: 72  RNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAV 131

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H      G    + V +SLV MY KC ++  ARRVFD+   R+ VSW S++  + + A  
Sbjct: 132 HALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVR-AGA 190

Query: 211 HEALEMFREFNYQSRDRP--NQHMLASVINACASL--GRLVSGKVAHGVVVRSGCEFNDV 266
            E  EM R F    R     N   L SVI  C+    G +   +  HG V+++G + +  
Sbjct: 191 RE--EMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY------GLGRFSLDLFN 320
           + SA++DMYAK G++  +  +F  +  P+VV + +MI G  +        +   +L L++
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYS 308

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           E+ SRG++P + TF  VL AC+ +G ++ G Q +     KY    D    + ++D+   +
Sbjct: 309 EVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQ-IHGQVIKYTFQEDDFIGSALIDLYFNS 367

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G +++ ++  +S    P    + W  ++S
Sbjct: 368 GCMEDGFRCFRS---SPKHDIVTWTAMVS 393


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 319/540 (59%), Gaps = 6/540 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI  Y        AR+LFDE+   +VVS+ ++++GY+     + AL L++ M+   V P+
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPD 196

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  TV+ AC+    +  G+Q+H+ IE  GF  N+ + + L+D+Y KC +V+ A  +F 
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V+SW ++I  H       EAL +F+E   +S + PN   + SV+ ACA LG + 
Sbjct: 257 GLAKKDVISWNTLIGGHTHMNLYKEALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAID 315

Query: 248 SGKVAHGVVVR--SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            G+  H  + +   G      + ++L+DMYAKCG +  + +VF+ +   S+ ++ +MI G
Sbjct: 316 IGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFG 375

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    + DLF++M   GI P+D+TFVG+L ACSHSG++D G     SM + Y I P
Sbjct: 376 FAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITP 435

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C++D+LG  G   EA ++ +++ ++PDG  ++W +LL A ++H  V++    + 
Sbjct: 436 KLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDG--VIWCSLLKACKMHNNVELGESYAQ 493

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            LI+   +   +YV LSN YA AG W+ V  +R+ +   GI K PGCS +EI    + F 
Sbjct: 494 NLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFI 553

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+    R  E+  +L E+E  M+E G+V   T  V  ++E+E +E  +  HSE+LA+AF
Sbjct: 554 IGDKFHPRNREIYRMLEEMEMLMEETGFV-PDTSEVLQEMEEEWKEGALRHHSEKLAIAF 612

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS   G  + I+KNLR+CR+CH+  KLIS I +R+ + RD  R H  ++G  SC D+W
Sbjct: 613 GLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 187/374 (50%), Gaps = 36/374 (9%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F+ + EPN++ + ++  G+        AL L+  M+   + PN ++F  ++K+C+ 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMY---GKCND------------------- 178
              LI G+QIH H+   G+  ++ V +SL+ MY   G+  D                   
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 179 ---------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
                    ++ AR++FD +  ++VVSW ++I  + +     EALE++++   ++  +P+
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDM-MKTNVKPD 196

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +  + +V++ACA  G +  G+  H  +   G   N  + + L+D+Y+KCG V  +  +F 
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            ++   V+++ ++I G     L + +L LF EM+  G  PNDVT + VL AC+H G +D 
Sbjct: 257 GLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDI 316

Query: 350 GIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           G   H+    R  G+   +   T ++DM  + G ++ A ++  S+          W  ++
Sbjct: 317 GRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS---WNAMI 373

Query: 409 SASRLHGRVDIAVE 422
               +HG+ + A +
Sbjct: 374 FGFAMHGKANAAFD 387



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++Y+  +F  I  P+++ + +M  G A       +L L+  MIS G+ PN  +F  +L +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           C+ S  + EG Q +     K G   D    T ++ M  + GRL++A+K+
Sbjct: 75  CAKSKALIEG-QQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKV 122


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/608 (34%), Positives = 322/608 (52%), Gaps = 40/608 (6%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDEMLEP 91
           I  L  C  L  +  +H++++  G L+N       +        T +  A +L +    P
Sbjct: 13  ISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNP 72

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKML---GNLVWPNEFTFATVIKACSMLADLITGK 148
            + +  S++  Y     P  +   +  +L    N + P+ +TF  +++ C+ L   +TG 
Sbjct: 73  TLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGL 132

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYG-------------------------------KCN 177
            +H  +   GF+ +  V + LV MY                                KC 
Sbjct: 133 CVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCG 192

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
           D+D AR++FD M  R+ V+W ++I  +AQ  +  EAL++F     +   + N+  +  V+
Sbjct: 193 DIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGV-KLNEVSMVLVL 251

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           +AC  L  L  G+  H  V R        + +ALVDMYAKCG+V+ + +VF  +   +V 
Sbjct: 252 SACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVY 311

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           T++S I G A  G G  SLDLFN+M   G++PN +TF+ VL  CS  GLV+EG +H DSM
Sbjct: 312 TWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSM 371

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
              YGI P  +HY  +VDM GR GRL EA     S+ + P  G   W  LL A R++   
Sbjct: 372 RNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGA--WSALLHACRMYKNK 429

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++   A  +++E   +   AYV LSN YA    WE+V SLR  MK  G+ K PGCS +E+
Sbjct: 430 ELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEV 489

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
             + + F  G+    R  E+   L E+ + ++  GYV     ++F D+E+E +E+ +  H
Sbjct: 490 DGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLF-DIEEEEKEDALSKH 548

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE++A+AFGLIS+   + IR++ NLR+C DCH+V K+IS I  R+ +VRD NRFHHF++G
Sbjct: 549 SEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDG 608

Query: 598 SCSCGDFW 605
            CSC D+W
Sbjct: 609 ECSCKDYW 616


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 303/540 (56%), Gaps = 42/540 (7%)

Query: 105 NMGQPQ--IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           N+  PQ    + ++ +M  + V P+  TF  ++ +      L  G++ H  I  FG   +
Sbjct: 37  NVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKD 96

Query: 163 LVVCSSLVDMYGKCND-------------------------------VDGARRVFDLMGC 191
             V +SL++MY  C D                               +D AR++FD M  
Sbjct: 97  PFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPE 156

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD----RPNQHMLASVINACASLGRLV 247
           RNV+SW+ +I  +    +  EAL++FRE      +    RPN+  +++V++AC  LG L 
Sbjct: 157 RNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALE 216

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGA 306
            GK  H  + +   E + V+ +AL+DMYAKCGS+  + +VFN + S   V  Y++MI   
Sbjct: 217 QGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCL 276

Query: 307 AKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
           A YGL      LF+EM  S  I PN VTFVG+L AC H GL++EG  +   M  ++GI P
Sbjct: 277 AMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITP 336

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C+VD+ GR+G + EA     S+ ++PD   L+WG+LLS SR+ G +     A  
Sbjct: 337 SIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD--VLIWGSLLSGSRMLGDIKTCEGALK 394

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +LIE +   + AYV LSN YA  G W  V  +R EM+  GI+K PGCS+VE+    + F 
Sbjct: 395 RLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFV 454

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+   +    + ++L E+ ++++E GYV   T  V +D+ ++ +E  +  HSE+LA+AF
Sbjct: 455 VGDESQQESERIYAMLDEIMQRLREAGYVT-DTKEVLLDLNEKDKEIALSYHSEKLAIAF 513

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            L+    G  +RI+KNLR+C DCH V K+IS +  R+ VVRD NRFHHFR+GSCSC DFW
Sbjct: 514 CLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 134/256 (52%), Gaps = 14/256 (5%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML----- 120
           N ++N Y +      AR+LFDEM E NV+S++ L+ GY+  G+ + AL LF++M      
Sbjct: 132 NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 191

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V PNEFT +TV+ AC  L  L  GK +H +I+ +  + ++V+ ++L+DMY KC  ++
Sbjct: 192 EAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLE 251

Query: 181 GARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
            A+RVF+ +G  ++V +++++I   A      E  ++F E        PN      ++ A
Sbjct: 252 RAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGA 311

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVA----SALVDMYAKCGSVNYSDKVFNRIS-NP 294
           C   G +  GK    +++    EF    +      +VD+Y + G +  ++     +   P
Sbjct: 312 CVHRGLINEGKSYFKMMIE---EFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEP 368

Query: 295 SVVTYTSMIVGAAKYG 310
            V+ + S++ G+   G
Sbjct: 369 DVLIWGSLLSGSRMLG 384


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 305/522 (58%), Gaps = 6/522 (1%)

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           F ++  P+   + +++ G+I    P  A   ++ M+      +  T + V+KAC+ +   
Sbjct: 62  FSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLAR 121

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           +   QIHTHI   GF  + ++ ++L+D+Y K  ++D A +VFD M  R++ SW ++I   
Sbjct: 122 LESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGF 181

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           AQ ++  EAL +F+        +PN+  +   ++ACA LG    G+  HG +     + N
Sbjct: 182 AQGSKPTEALSLFKRMEIDGF-KPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMN 240

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
             V + ++DMYAKCG V+ +  VF  +S    +VT+ +MI+  A +G G  +L+LF +M 
Sbjct: 241 AQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMD 300

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
             G+ P+DV+++ VL AC+H GLV+EG +  +SM    G+ P+ KHY  VVD+LGR GRL
Sbjct: 301 QSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRL 359

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            EAY +  S+   PD   +LW TLL ASR H  V+IA   S +L+E        +V LSN
Sbjct: 360 HEAYDIVNSMPTVPD--IVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSN 417

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA    W +V  +R  MK   + K PG S++E     + FY  +   E   E+ + L E
Sbjct: 418 VYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDE 477

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +  ++KE GYV  +T  V  D+ +E +E ++G HSE+LA+AFGLIS  +G  I+++KNLR
Sbjct: 478 IRFRVKEYGYVA-ETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLR 536

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH V KLIS I +R+ +VRD  RFH F+ G CSC D+W
Sbjct: 537 ICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 148/262 (56%), Gaps = 4/262 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I++ GF+++      L++ Y ++ +   A ++FDEM++ ++ S+ +L++G+    +
Sbjct: 127 IHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSK 186

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  AL LF++M  +   PNE +    + AC+ L D   G++IH +I+   F  N  VC+ 
Sbjct: 187 PTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNV 246

Query: 169 LVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           ++DMY KC  VD A  VF+ M CR ++V+W ++I+A A + +G +ALE+F + + QS   
Sbjct: 247 VIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMD-QSGVS 305

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P+     +V+ AC   G +  G      +   G + N     ++VD+  + G ++ +  +
Sbjct: 306 PDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDI 365

Query: 288 FNRISN-PSVVTYTSMIVGAAK 308
            N +   P +V + +++ GA++
Sbjct: 366 VNSMPTVPDIVLWQTLL-GASR 386


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 321/561 (57%), Gaps = 11/561 (1%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H  ++ SG   N    N L++ Y ++ +   +R++  +M   +VV++ +L+ GY     
Sbjct: 474  LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 533

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVCS 167
            P  AL  FQ M    V  N  T  +V+ AC +  DL+  GK +H +I + GF+ +  V +
Sbjct: 534  PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 593

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM---FREFNYQS 224
            SL+ MY KC D+  ++ +F+ +  RN+++W +++ A+A +  G E L++    R F    
Sbjct: 594  SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS- 652

Query: 225  RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
                +Q   +  ++A A L  L  G+  HG+ V+ G E +  + +A  DMY+KCG +   
Sbjct: 653  ---LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV 709

Query: 285  DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             K+     N S+ ++  +I    ++G        F+EM+  GIKP  VTFV +L ACSH 
Sbjct: 710  VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 769

Query: 345  GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            GLVD+G+ + D + R +G+ P  +H  CV+D+LGR+GRL EA      + + P+   L+W
Sbjct: 770  GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPN--DLVW 827

Query: 405  GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
             +LL++ ++HG +D   +A+  L +   +  + YV  SN +A  G WE+V ++R +M   
Sbjct: 828  RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 887

Query: 465  GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
             I K+  CSWV+++D+  +F  G+    +  E+ + L ++++ +KE GYV   T     D
Sbjct: 888  NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV-ADTSQALQD 946

Query: 525  VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
             ++E +E  +  HSERLALA+ L+S P+G T+RI KNLR+C DCH V+K +S ++ R  V
Sbjct: 947  TDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIV 1006

Query: 585  VRDVNRFHHFRNGSCSCGDFW 605
            +RD  RFHHF  G CSC D+W
Sbjct: 1007 LRDQYRFHHFERGLCSCKDYW 1027



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 193/384 (50%), Gaps = 10/384 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K GF S     N L+  Y    ++  A  +F +M   +++S+ SLMA ++N G+
Sbjct: 373 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 432

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L   M+ +    N  TF + + AC        G+ +H  +   G  YN ++ ++
Sbjct: 433 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 492

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MYGK  ++  +RRV   M  R+VV+W ++I  +A++    +AL  F+    +     
Sbjct: 493 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVS-S 551

Query: 229 NQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           N   + SV++AC   G L+  GK  H  +V +G E ++ V ++L+ MYAKCG ++ S  +
Sbjct: 552 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDL 611

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN + N +++T+ +M+   A +G G   L L ++M S G+  +  +F   L A +   ++
Sbjct: 612 FNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVL 671

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL--WG 405
           +EG Q L  +  K G   D+  +    DM  + G + E  K+     + P     L  W 
Sbjct: 672 EEG-QQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM-----LPPSVNRSLPSWN 725

Query: 406 TLLSASRLHGRVDIAVEASNQLIE 429
            L+SA   HG  +      ++++E
Sbjct: 726 ILISALGRHGYFEEVCATFHEMLE 749



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 31/343 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + KSG LS+ +    +++ Y        +R++F+EM + NVVS+TSLM GY + G+
Sbjct: 196 VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 255

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+  + +++                         D   G+QI   +   G +  L V +S
Sbjct: 256 PEEVIDIYK-------------------------DESLGRQIIGQVVKSGLESKLAVENS 290

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR--D 226
           L+ M G   +VD A  +FD M  R+ +SW SI  A+AQN    E+   FR F+   R  D
Sbjct: 291 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEES---FRIFSLMRRFHD 347

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             N   ++++++    +     G+  HG+VV+ G +    V + L+ MYA  G    ++ 
Sbjct: 348 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 407

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF ++    ++++ S++      G    +L L   MIS G   N VTF   L AC     
Sbjct: 408 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 467

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            ++G + L  +    G+  +      +V M G+ G + E+ ++
Sbjct: 468 FEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 509



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 194/430 (45%), Gaps = 45/430 (10%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           N   SC  +  F Q   E     +  +VH+  +K     +    N LIN Y +  + + A
Sbjct: 71  NPEISCFDQIGFSQITIET----TGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPA 126

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           R LFD M   N VS+ ++M+G + +G     +  F+KM    + P+ F  A+++ AC   
Sbjct: 127 RHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRS 186

Query: 142 ADLI-TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             +   G Q+H  +   G   ++ V ++++ +YG    V  +R+VF+ M  RNVVSWTS+
Sbjct: 187 GSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSL 246

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +V ++   +  E ++++++                      SLGR + G+     VV+SG
Sbjct: 247 MVGYSDKGEPEEVIDIYKD---------------------ESLGRQIIGQ-----VVKSG 280

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E    V ++L+ M    G+V+Y++ +F+++S    +++ S+    A+ G    S  +F+
Sbjct: 281 LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS 340

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR- 379
            M     + N  T   +L    H      G + +  +  K G         CV + L R 
Sbjct: 341 LMRRFHDEVNSTTVSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSVVCVCNTLLRM 395

Query: 380 ---TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
               GR  EA  + K +   P    + W +L+++    GR   A+     +I S + V  
Sbjct: 396 YAGAGRSVEANLVFKQM---PTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV-- 450

Query: 437 AYVTLSNTYA 446
            YVT ++  A
Sbjct: 451 NYVTFTSALA 460



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 31/272 (11%)

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           +G+  H + V+     + +  + L++MY K G V  +  +F+ +   + V++ +M+ G  
Sbjct: 90  TGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG-LVDEGIQHLDSMYRKYGIIPD 366
           + GL    ++ F +M   GIKP+      ++ AC  SG +  EG+Q +     K G++ D
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ-VHGFVAKSGLLSD 208

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR----VDIAVE 422
               T ++ + G  G +  + K+ + +   PD   + W +L+      G     +DI  +
Sbjct: 209 VYVSTAILHLYGVYGLVSCSRKVFEEM---PDRNVVSWTSLMVGYSDKGEPEEVIDIYKD 265

Query: 423 AS--NQLI--------ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
            S   Q+I        ES   V N+ +++  +    G  +  + +  +M      +    
Sbjct: 266 ESLGRQIIGQVVKSGLESKLAVENSLISMLGSM---GNVDYANYIFDQMS-----ERDTI 317

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
           SW  I     A YA N   E    + SL+R  
Sbjct: 318 SWNSIA----AAYAQNGHIEESFRIFSLMRRF 345


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 319/541 (58%), Gaps = 17/541 (3%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +++ Y +  +   AR LFDEM + NVVS+T++++GY   G+  +A  LF+ M       N
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----N 235

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCNDVDGARRV 185
           E ++       +ML   I    +    E F    ++ +  C++++  +G+   VD A+ V
Sbjct: 236 EVSWT------AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ M  R+  +W+++I A+ QN    EAL  FRE  ++   RPN   + S++  CA+L  
Sbjct: 290 FEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV-RPNYPSVISILTVCAALAV 348

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  G+  H  ++R   + +    SAL+ MY KCG+++ + +VF+      +V + SMI G
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A++GLG  +L +F++M   G+ P+ +T++G L ACS++G V EG +  +SM     I P
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A+HY+C+VD+LGR+G ++EA+ L K++ V+PD   ++WG L+ A R+H   +IA  A+ 
Sbjct: 469 GAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDA--VIWGALMGACRMHRNAEIAEFAAK 526

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +L+E     A  YV LS+ Y   G WE+   +R  +    ++K PGCSW+E   + + F 
Sbjct: 527 KLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFT 586

Query: 486 AGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
           +G+ L     + +L +L +L+  + E GY       V  D+++E +   +  HSER A+A
Sbjct: 587 SGDVLAHPEHAAILRILEKLDGLLMESGY-SADGSFVLHDIDEEQKSHSLRYHSERQAVA 645

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           +GL+ IP+G+ IR+MKNLR+C DCH   KLI+ I  R+ ++RD NRFHHF++G CSC D+
Sbjct: 646 YGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDY 705

Query: 605 W 605
           W
Sbjct: 706 W 706



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 153/330 (46%), Gaps = 27/330 (8%)

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
             P+VVS+TSL+ GY+  G    A+ LFQ+M       N  ++        +L  L+   
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTV------LLGGLLDAG 157

Query: 149 QIHTHIETFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           +++     F      ++V  ++++  Y +   +  AR +FD M  RNVVSWT++I  +AQ
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N + + A ++F E   +  +     ML   I A         G V     + +    + V
Sbjct: 218 NGEVNLARKLF-EVMPERNEVSWTAMLVGYIQA---------GHVEDAAELFNAMPEHPV 267

Query: 267 VA-SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            A +A++  + + G V+ +  VF ++      T+++MI    +      +L  F EM+ R
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           G++PN  + + +L  C+   ++D G +   +M R      D    + ++ M  + G LD+
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAVSALITMYIKCGNLDK 386

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           A ++  + +       ++W ++++    HG
Sbjct: 387 AKRVFHTFEPK---DIVMWNSMITGYAQHG 413



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 120/289 (41%), Gaps = 53/289 (18%)

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            +  +++GAR  F+ M  R   S+ +++  + +N     AL +FR     SRD       
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM--PSRD------- 78

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
                  AS   L+S     G+ +R            L D  A   S+ +          
Sbjct: 79  ------LASYNALIS-----GLSLRR---------QTLPDAAAALASIPFP--------- 109

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
           PSVV++TS++ G  ++GL   ++ LF +M  R    N V++  +L     +G V+E  + 
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            D M  +     D   +T ++    + GR+ EA  L   +   P    + W  ++S    
Sbjct: 166 FDEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEM---PKRNVVSWTAMISGYAQ 217

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +G V++A +    + E N+    ++  +   Y  AG  E+   L + M 
Sbjct: 218 NGEVNLARKLFEVMPERNEV---SWTAMLVGYIQAGHVEDAAELFNAMP 263



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M K+  +N     A S+      R         I  L  C  L  L     VH+ +L+  
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           F  + F ++ LI  Y++      A+++F      ++V + S++ GY   G  + AL +F 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQI------HTHIETFGFQYNLVVCSSLVD 171
            M    + P+  T+   + ACS    +  G++I      ++ I      Y     S +VD
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY-----SCMVD 478

Query: 172 MYGKCNDVDGARRVFDLM 189
           + G+   V+ A   FDL+
Sbjct: 479 LLGRSGLVEEA---FDLI 493


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/553 (36%), Positives = 306/553 (55%), Gaps = 5/553 (0%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           FI    + K+L     +H+ +  S F  + F  N LI+ Y +      A ++FD+M   +
Sbjct: 57  FITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKD 116

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +VS+TSL+AGY     P  A+ L   ML     PN FTFA+++KA    AD   G QIH 
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHA 176

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
                 +  ++ V S+L+DMY +C  +D A  VFD +  +N VSW ++I   A+   G  
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           AL +F E      +       +S+ +A A +G L  GK  H  +++S  +    V + ++
Sbjct: 237 ALMVFAEMQRNGFE-ATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTML 295

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
           DMYAK GS+  + KVF R+ N  +VT+ SM+   A+YGLG+ ++  F EM   GI  N +
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           +F+ +L ACSH GLV EG  + D M ++Y + P+ +HY  VVD+LGR G L+ A      
Sbjct: 356 SFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFK 414

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + ++P     +WG LL+A R+H    +   A++ + + +   +   V L N YA  G W+
Sbjct: 415 MPMEPTAA--VWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
               +R  MK TG+ KEP CSWVEI +  + F A +    R  E+  +  E+  K+++ G
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEG 532

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV      V + V+++ RE  +  HSE++ALAF LI +P G TIRIMKN+R+C DCH  F
Sbjct: 533 YV-PDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAF 591

Query: 573 KLISDIVERDFVV 585
           K IS + ER+ V+
Sbjct: 592 KYISKVFEREIVI 604



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 147/295 (49%), Gaps = 15/295 (5%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P    +   I AC+   +L   ++IH H+ +  F  +  + +SL+ +Y KC  V  A +V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  +++VSWTS+I  +AQN    EA+ +      + R +PN    AS++ A  +   
Sbjct: 109 FDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGM-LKGRFKPNGFTFASLLKAVGAYAD 167

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G   H + V+     +  V SAL+DMYA+CG ++ +  VF+++ + + V++ ++I G
Sbjct: 168 SGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISG 227

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G G  +L +F EM   G +    T+  +  A +  G +++G       +    +I 
Sbjct: 228 FARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQG------KWVHAHMIK 281

Query: 366 DAKHYTCVV-----DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
             +  T  V     DM  ++G + +A K+ + +    +   + W ++L+A   +G
Sbjct: 282 SRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVL---NKDLVTWNSMLTAFAQYG 333


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 309/538 (57%), Gaps = 4/538 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y +    + A  +F+ +   +V+ ++ L++ Y    Q + A  +F +M+ + V PN
Sbjct: 290 LLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPN 349

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           EF+ + V++AC+ +A L  G+QIH      G++  L V ++L+DMY KC +++ +  +F 
Sbjct: 350 EFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFS 409

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +   N VSW +IIV + Q+    +AL +F E    +     Q   +SV+ ACA+   + 
Sbjct: 410 SLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMR-AAHMLSTQVTFSSVLRACANTSSIK 468

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
                H ++ +S    + +V ++L+D YAKCG +  + KVF  I    VV++ S+I   A
Sbjct: 469 HAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYA 528

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G    +L+LF+ M    IK NDVTFV +L  C  +GLV++G+   +SM   + I P  
Sbjct: 529 LHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSM 588

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HYTC+V +LGR GRL +A K    I   P   P++W  LLS+  +H  V +   A+ ++
Sbjct: 589 EHYTCIVRLLGRAGRLTDALKFIGDIPSTP--SPMVWRALLSSCVVHKNVALGRYAAEKV 646

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           ++        YV LSN YA AG  + V   R  M+  G+ KE G SWVEI+ + +AF  G
Sbjct: 647 LDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVG 706

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +A       + ++L  L  K    GYV     +V  DV++E +  ++ +HSERLALA+GL
Sbjct: 707 SADHPDMRIINAMLEWLNLKASREGYV-PDINVVLHDVDEEEKARMLWVHSERLALAYGL 765

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              P G  IRIMKNLR C DCH +FK+IS IV+R+ +VRD+NRFHHF  G CSCGD+W
Sbjct: 766 SMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 180/363 (49%), Gaps = 7/363 (1%)

Query: 48  SVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           +VH+ +++ G ++  +TF  N L+N Y +L     AR+LFD M E N VS+ +LM GY  
Sbjct: 66  AVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYAL 125

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G+ + AL LF+++       N F   T++K    +        IH      G   N  V
Sbjct: 126 RGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFV 185

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++L+D Y  C  V  AR VFD +  ++ V+WT+++  +++N     AL  F +      
Sbjct: 186 GTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGF 245

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +PN  +L S + A   L   + GK  HG  V++  +    V  AL+DMYAKCG +  + 
Sbjct: 246 -KPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAH 304

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F  I +  V+ ++ +I   A+      + ++F  M+   + PN+ +  GVL AC++  
Sbjct: 305 AIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIA 364

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            ++ G + + ++  K G   +      ++DM  +   ++ + ++  S+Q   D   + W 
Sbjct: 365 FLELG-EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQ---DANEVSWN 420

Query: 406 TLL 408
           T++
Sbjct: 421 TII 423



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 174/345 (50%), Gaps = 26/345 (7%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C ++  L     +H+  +K G+ S  F  N L++ Y + +  + + ++F  + + N 
Sbjct: 357 LQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANE 416

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ +++ GY   G  + AL +F +M    +   + TF++V++AC+  + +    QIH+ 
Sbjct: 417 VSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSL 476

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           IE   F  + +VC+SL+D Y KC  +  A +VF+ +   +VVSW SII A+A + +   A
Sbjct: 477 IEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNA 536

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL-- 271
           LE+F   N +S  + N     S+++ C S     +G V  G+ + +    +  +  ++  
Sbjct: 537 LELFDRMN-KSDIKANDVTFVSLLSVCGS-----TGLVNQGLWLFNSMMMDHRIKPSMEH 590

Query: 272 ----VDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMI---VGAAKYGLGRFSLDLFNEMI 323
               V +  + G +  + K    I S PS + + +++   V      LGR++ +   +  
Sbjct: 591 YTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLD-- 648

Query: 324 SRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
              I+P+D  T+V + +  + +G++DE      SM R  G+  +A
Sbjct: 649 ---IEPHDETTYVLLSNMYAAAGILDEVALWRKSM-RNVGVKKEA 689


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 321/561 (57%), Gaps = 11/561 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++ SG   N    N L++ Y ++ +   +R++  +M   +VV++ +L+ GY     
Sbjct: 384 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 443

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVCS 167
           P  AL  FQ M    V  N  T  +V+ AC +  DL+  GK +H +I + GF+ +  V +
Sbjct: 444 PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 503

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM---FREFNYQS 224
           SL+ MY KC D+  ++ +F+ +  RN+++W +++ A+A +  G E L++    R F    
Sbjct: 504 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS- 562

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               +Q   +  ++A A L  L  G+  HG+ V+ G E +  + +A  DMY+KCG +   
Sbjct: 563 ---LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV 619

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            K+     N S+ ++  +I    ++G        F+EM+  GIKP  VTFV +L ACSH 
Sbjct: 620 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 679

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLVD+G+ + D + R +G+ P  +H  CV+D+LGR+GRL EA      + + P+   L+W
Sbjct: 680 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPN--DLVW 737

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            +LL++ ++HG +D   +A+  L +   +  + YV  SN +A  G WE+V ++R +M   
Sbjct: 738 RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 797

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            I K+  CSWV+++D+  +F  G+    +  E+ + L ++++ +KE GYV   T     D
Sbjct: 798 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV-ADTSQALQD 856

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
            ++E +E  +  HSERLALA+ L+S P+G T+RI KNLR+C DCH V+K +S ++ R  V
Sbjct: 857 TDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIV 916

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           +RD  RFHHF  G CSC D+W
Sbjct: 917 LRDQYRFHHFERGLCSCKDYW 937



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 193/384 (50%), Gaps = 10/384 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K GF S     N L+  Y    ++  A  +F +M   +++S+ SLMA ++N G+
Sbjct: 283 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 342

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L   M+ +    N  TF + + AC        G+ +H  +   G  YN ++ ++
Sbjct: 343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 402

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MYGK  ++  +RRV   M  R+VV+W ++I  +A++    +AL  F+    +     
Sbjct: 403 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVS-S 461

Query: 229 NQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           N   + SV++AC   G L+  GK  H  +V +G E ++ V ++L+ MYAKCG ++ S  +
Sbjct: 462 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDL 521

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN + N +++T+ +M+   A +G G   L L ++M S G+  +  +F   L A +   ++
Sbjct: 522 FNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVL 581

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL--WG 405
           +EG Q L  +  K G   D+  +    DM  + G + E  K+     + P     L  W 
Sbjct: 582 EEG-QQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM-----LPPSVNRSLPSWN 635

Query: 406 TLLSASRLHGRVDIAVEASNQLIE 429
            L+SA   HG  +      ++++E
Sbjct: 636 ILISALGRHGYFEEVCATFHEMLE 659



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 6/343 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + KSG LS+ +    +++ Y        +R++F+EM + NVVS+TSLM GY + G+
Sbjct: 81  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 140

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+  + +++ M G  V  NE + + VI +C +L D   G+QI   +   G +  L V +S
Sbjct: 141 PEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENS 200

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR--D 226
           L+ M G   +VD A  +FD M  R+ +SW SI  A+AQN    E+   FR F+   R  D
Sbjct: 201 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEES---FRIFSLMRRFHD 257

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             N   ++++++    +     G+  HG+VV+ G +    V + L+ MYA  G    ++ 
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 317

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF ++    ++++ S++      G    +L L   MIS G   N VTF   L AC     
Sbjct: 318 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 377

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            ++G + L  +    G+  +      +V M G+ G + E+ ++
Sbjct: 378 FEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 182/380 (47%), Gaps = 16/380 (4%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +  + + AR LFD M   N VS+ ++M+G + +G     +  F+KM    + P+ F  
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 132 ATVIKACSMLADLI-TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           A+++ AC     +   G Q+H  +   G   ++ V ++++ +YG    V  +R+VF+ M 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWTS++V ++   +  E +++++    +     N++ ++ VI++C  L     G+
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVG-CNENSMSLVISSCGLLKDESLGR 180

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
              G VV+SG E    V ++L+ M    G+V+Y++ +F+++S    +++ S+    A+ G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
               S  +F+ M     + N  T   +L    H      G + +  +  K G        
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSV 295

Query: 371 TCVVDMLGR----TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            CV + L R     GR  EA  + K +   P    + W +L+++    GR   A+     
Sbjct: 296 VCVCNTLLRMYAGAGRSVEANLVFKQM---PTKDLISWNSLMASFVNDGRSLDALGLLCS 352

Query: 427 LIESNQQVANAYVTLSNTYA 446
           +I S + V   YVT ++  A
Sbjct: 353 MISSGKSV--NYVTFTSALA 370



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K   V  AR +FD+M  RN VSW +++    +     E +E FR+       +P+  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKM-CDLGIKPSSF 59

Query: 232 MLASVINACASLGRLV-SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           ++AS++ AC   G +   G   HG V +SG   +  V++A++ +Y   G V+ S KVF  
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           + + +VV++TS++VG +  G     +D++  M   G+  N+ +   V+ +C    L DE 
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL--LKDES 177

Query: 351 I-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           + + +     K G+         ++ MLG  G +D A
Sbjct: 178 LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 214


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 321/559 (57%), Gaps = 5/559 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H+ IL+    +     N L+  Y +    +   ++F+ M   +VVS   L  GY  + 
Sbjct: 369 TIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALE 428

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVC 166
               A+ +F  M G  + PN  T   +   C  L DL + G  +H ++   G   +  + 
Sbjct: 429 DVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYIT 488

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+ MY  C D++ +  +F  +  ++V+SW +II A+ ++ +G EA+++F +  +   +
Sbjct: 489 NSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAG-N 547

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           + ++  LA  +++ A+L  L  G   HG+ V++G + +  V +A +DMY KCG ++   K
Sbjct: 548 KLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLK 607

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
                ++     + ++I G A+YG  + + D F  M+S G KP+ VTFV +L ACSH+GL
Sbjct: 608 TLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGL 667

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +D+G+ + +SM   +G+ P  KH  C+VD+LGR G+  EA K    + V P+   L+W +
Sbjct: 668 IDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPND--LIWRS 725

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LLS+SR H  +DI  +A+  L+E +    +AYV LSN YA    W +V  LRS MK   +
Sbjct: 726 LLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKL 785

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
           +K P CSW++++++   F  G+       ++   L E+  K++E GYV   T     D +
Sbjct: 786 NKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYV-ADTSSALHDTD 844

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  +  HSE+LALA+GL+ +P+G TIRI KNLR+C DCH VFKL+S +  R+ V+R
Sbjct: 845 EEQKEHNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHREIVLR 904

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFH F++GSCSC DFW
Sbjct: 905 DPYRFHQFKHGSCSCSDFW 923



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 200/424 (47%), Gaps = 10/424 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V + ++ SG L++    N LI  +  L++ Q A +LFD M E + +S+ ++++ Y +   
Sbjct: 167 VTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEV 226

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVCS 167
                ++   M    V P+  T  +++  C+  +DL+  G  IH+   + G   ++ + +
Sbjct: 227 YSKCFIVLSDMRHGEVKPDVTTLCSLVSVCAS-SDLVALGSGIHSLCVSSGLHCSVPLIN 285

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LV+MY     +D A  +F  M  R+V+SW ++I ++ Q+    EALE   +        
Sbjct: 286 ALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGP 345

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN    +S + AC+S   L++G+  H ++++   +   ++ ++L+ MY+KC S+  +++V
Sbjct: 346 PNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERV 405

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +    VV+   +  G A       ++ +F+ M   GIKPN +T + +   C   G +
Sbjct: 406 FESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDL 465

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
                 L +   + G++ D      ++ M    G L+ +  +   I    +   + W  +
Sbjct: 466 HSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRIN---NKSVISWNAI 522

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           ++A+  HGR + A+    +L   +Q   N          L+    N+ SL   M+  G+ 
Sbjct: 523 IAANVRHGRGEEAI----KLFMDSQHAGNKLDRFCLAECLSSS-ANLASLEEGMQLHGLS 577

Query: 468 KEPG 471
            + G
Sbjct: 578 VKNG 581



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 149/297 (50%), Gaps = 2/297 (0%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           A++H+   ++G + N +    L++ Y        A++LF EM + NVVS+T++M    + 
Sbjct: 64  AAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSN 123

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G  + AL+ +++M    V  N    ATV+  C  L D + G Q+  H+   G   ++ V 
Sbjct: 124 GCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVA 183

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+ M+G    V  A R+FD M  R+ +SW ++I  ++      +   +  +  +    
Sbjct: 184 NSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRH-GEV 242

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P+   L S+++ CAS   +  G   H + V SG   +  + +ALV+MY+  G ++ ++ 
Sbjct: 243 KPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAES 302

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPNDVTFVGVLHACS 342
           +F  +S   V+++ +MI    +      +L+   +++      PN +TF   L ACS
Sbjct: 303 LFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACS 359



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 160/346 (46%), Gaps = 8/346 (2%)

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS---MLADLITGKQIH 151
           S+ + ++G    G    A  L + M    V  + F  A+++ AC           G  IH
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIH 67

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                 G   N+ + ++L+ +YG    V  A+R+F  M  RNVVSWT+I+VA + N    
Sbjct: 68  ALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCME 127

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL  +R    +     N + LA+V++ C +L   V+G      VV SG   +  VA++L
Sbjct: 128 EALVAYRRMRKEGV-MCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSL 186

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + M+     V  ++++F+R+     +++ +MI   +   +      + ++M    +KP+ 
Sbjct: 187 ITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDV 246

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
            T   ++  C+ S LV  G   + S+    G+         +V+M    G+LDEA  L +
Sbjct: 247 TTLCSLVSVCASSDLVALG-SGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFR 305

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           ++        + W T++S+         A+E   QL+++++   N+
Sbjct: 306 NMS---RRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNS 348


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/565 (35%), Positives = 329/565 (58%), Gaps = 19/565 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY---- 103
           +VH  ++K+G  S+ F ++ +I+ Y +      A  LF  + EPNVV + +++AG+    
Sbjct: 233 AVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTE 292

Query: 104 --INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
             I       AL L+ ++    + P EFTF++V++AC++   L  GKQIH  +  + FQ 
Sbjct: 293 TVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQE 352

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + S+L+D+Y     ++   R F      ++V+WT+++    QN    +AL +F E +
Sbjct: 353 DDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHE-S 411

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             +  +P+   ++SV+NACASL    +G+       +SG +   V+ ++ V MYA+ G V
Sbjct: 412 LGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDV 471

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           + + + F  + +  VV+++++I   A++G  R +L  F+EM+   + PN++TF+GVL AC
Sbjct: 472 DAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTAC 531

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH GLVDEG+++ ++M + YG+ P  KH TCVVD+LGR GRL +A     +     D  P
Sbjct: 532 SHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHAD--P 589

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W +LL++ R+H  ++     +N+++E     + +YV L N Y  AGE       R  M
Sbjct: 590 VIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLM 649

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           K+ G+ KEPG SW+E++   ++F AG+      S + + L E+  ++++         L 
Sbjct: 650 KQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEK---------LA 700

Query: 522 FVDVEDEAREE-IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
             D E   RE+ ++  HSE+LA+A G+I +P+   IR+MKNLR+CRDCH   KLIS    
Sbjct: 701 TTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSEN 760

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ ++RD  RFHHFR+GSCSC D+W
Sbjct: 761 REIILRDPIRFHHFRDGSCSCADYW 785



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 193/389 (49%), Gaps = 17/389 (4%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           A ++  L+ C  L   A+VH+ I ++   ++ F  N L+  Y RL     AR+L DEM  
Sbjct: 12  AFYLHLLRACTSLRHAAAVHAHIARAHPAASLFLRNTLLAAYCRLGGPLPARRLLDEMPR 71

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            N VS+  L+  Y   G   ++L    +     V  + F++A  + ACS    L  G+ +
Sbjct: 72  RNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAV 131

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H      G    + V +SLV MY KC ++  ARRVFD+   R+ VSW S++  + + A  
Sbjct: 132 HALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVR-AGA 190

Query: 211 HEALEMFREFNYQSRDRP--NQHMLASVINACASL--GRLVSGKVAHGVVVRSGCEFNDV 266
            E  EM R F    R     N   L SVI  C+    G +   +  HG V+++G + +  
Sbjct: 191 RE--EMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY------GLGRFSLDLFN 320
           + SA++DMYAK G++  +  +F  +  P+VV + +MI G  +        +   +L L++
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYS 308

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           E+ SRG++P + TF  VL AC+ +G ++ G Q +     KY    D    + ++D+   +
Sbjct: 309 EVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQ-IHGQVIKYTFQEDDFIGSALIDLYFNS 367

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G +++ ++  +S    P    + W  ++S
Sbjct: 368 GCMEDGFRCFRS---SPKHDIVTWTAMVS 393


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 325/598 (54%), Gaps = 41/598 (6%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+    +H + ++ GF  +    N LI+ + + K    AR +FD+M+  +VVS+TS+   
Sbjct: 93  LVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYC 152

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQY 161
           Y+N G  +  +LLF++M  N +  N  T ++++ AC   AD I  G+++H  I     + 
Sbjct: 153 YVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC---ADYIKLGREVHGFILRNEMEG 209

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N+ V S+LV+MY     +  AR VFD M  R++VSW  ++ A+  N +    L +F +  
Sbjct: 210 NVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMR 269

Query: 222 YQ----------------------------------SRDRPNQHMLASVINACASLGRLV 247
            +                                  S  +PN+  + S +  C +L  L 
Sbjct: 270 KEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLR 329

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK  HG V R     +  + +ALV +YAKCG +  S  VFN +    VV + +MI+  +
Sbjct: 330 GGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANS 389

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G G  SL LFN+M+  G++PN VTF+GVL  CSHS L DEG+   +SM  ++ I PDA
Sbjct: 390 MHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDA 449

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            HY+C+VD+L R GRL+EAY   + + ++P         LL A R++  V++   A++QL
Sbjct: 450 DHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWG--ALLGACRVYKNVELGTLAASQL 507

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
            E     A  YV LSN    A +W     +R  M+  G+ K PG SWV+++++ Y+F  G
Sbjct: 508 FEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTG 567

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +   E+   +   L E++ KM+  GY    T  V  +V+ E REE +  HSERLA+AFG+
Sbjct: 568 DKSNEQKDMIYRFLDEIDEKMRLDGY-QPNTDFVLQNVDQEQREETLCSHSERLAVAFGI 626

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++     T+R+ KNLR+C DCH+  KLI+ IV    +VRD  RFHHFR+G C+C DFW
Sbjct: 627 LNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 42/385 (10%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  LFD++ EP++ ++T L++G+   G P+ A+ ++  +L   V P++F   +V KAC+ 
Sbjct: 30  ALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAA 89

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             DL+  K+IH     FGF  +LV+ ++L+DM+GKC  V+GAR VFD M  ++VVSWTS+
Sbjct: 90  SGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSM 149

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
              +       + + +FRE       R N   ++S++ ACA   +L  G+  HG ++R+ 
Sbjct: 150 TYCYVNCGMCRQGILLFREMGLNGI-RANSLTVSSILPACADYIKL--GREVHGFILRNE 206

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM------------------ 302
            E N  V+SALV+MYA    +  +  VF+ + +  +V++  M                  
Sbjct: 207 MEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFH 266

Query: 303 -----------------IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
                            I G  + G    +L +  +M   GIKPN +T V  L  C++  
Sbjct: 267 QMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLE 326

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G +    ++R +  I D    T +V +  + G L+ +  +  ++   P    + W 
Sbjct: 327 SLRGGKEIHGYVFRHW-FIEDVTITTALVLLYAKCGDLELSRHVFNTM---PRKDVVAWN 382

Query: 406 TLLSASRLHGRVDIAVEASNQLIES 430
           T++ A+ +HG+   ++   N++++S
Sbjct: 383 TMIMANSMHGKGGESLILFNKMLDS 407



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 5/184 (2%)

Query: 162 NLVVCSS--LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           NL  C S  L+       D+  A  +FD +   ++ +WT +I  H Q+    +A++++  
Sbjct: 8   NLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYST 67

Query: 220 FNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
               SR+ RP++ +L SV  ACA+ G LV  K  H   ++ G   + V+ +AL+DM+ KC
Sbjct: 68  L--LSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKC 125

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
             VN +  VF+ +    VV++TSM       G+ R  + LF EM   GI+ N +T   +L
Sbjct: 126 KFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSIL 185

Query: 339 HACS 342
            AC+
Sbjct: 186 PACA 189


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/590 (35%), Positives = 345/590 (58%), Gaps = 23/590 (3%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVR------LKKTQVARQ 83
           ++ F+  L +C  L  L  +H++ ++     N  T N  +  Y R      L     A +
Sbjct: 25  QSRFLHLLTDCTDLSKLKQIHAQAIR-----NFSTHNSSLFLYSRILHVSSLIDFDYACR 79

Query: 84  LFDEMLEPNVVSYTSLM-AGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSML 141
           +F+++  PN   + +L+ A   ++ + + A+ +F +ML    V P++ TF  ++KAC+ +
Sbjct: 80  VFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYV 139

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
             L  G+Q H  I   G   ++ V +SL+ +Y  C  +  A +VF+ M  R++VSW  +I
Sbjct: 140 FALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 199

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR--S 259
            A+ Q+     AL++F E   Q+   P+ + + S+++ACA +G L  G  AH  V+R  S
Sbjct: 200 DAYVQSGLFENALKLFVEM--QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKAS 257

Query: 260 GCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           G    DV + S+LVDMY+KCGS+  + +VF  +    + ++ SMI+  A +G G+ +L  
Sbjct: 258 GAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQC 317

Query: 319 FNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           F+ ++      PN VTFVGVL AC+H G+V +G ++ D M   Y I P  +HY C+VD+L
Sbjct: 318 FSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLL 377

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS-RLHGRVDIAVEASNQLIESNQQVAN 436
            R+G +DEA +L  ++ + PD   ++W +LL A  + +  V+++ E + ++++S + +++
Sbjct: 378 SRSGFIDEALELVANMHIKPDA--VIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISS 435

Query: 437 A-YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             YV LS  YA A +W +V  +R  M   G+ KEPGCS +EI   ++ F+AG+    R  
Sbjct: 436 GVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIK 495

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E+  ++  +E K++ RGY    +    VD  D  +++ + LHSERLA+AFGL+++  G  
Sbjct: 496 EIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTP 555

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +RI KNLR+C DCH V KLIS+I   + ++RD NRFHHF++G CSC DFW
Sbjct: 556 VRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 295/512 (57%), Gaps = 10/512 (1%)

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            S++  Y+++ +   +L +F  M    + P+  TF  V+KA + L D   GK IH  +  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  ++   ++LV +Y  C  +  A ++FD M  RN V+W ++I  +  N +  +A++ 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           FR        +P++  +  V++AC+ LG    GK  H  +  +    N  V +AL+DMYA
Sbjct: 178 FRGM-LADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG+V   +KVF  I   +V T+  +I G A  G G  +L  F+ M+    KP++VTF+G
Sbjct: 237 KCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLG 296

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL AC H GLV EG     SM +++G+ P  +HY C+VD+LGR G L+EA +L +S+ ++
Sbjct: 297 VLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE 356

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           PD  P++W  LL A R+HG   +      +LIE        YV LSN Y+    W  V  
Sbjct: 357 PD--PIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGK 414

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE---RKMKERGY 513
           LR  M   GI K PGCS +EI +  Y F A N   +R  E  ++ ++L+   +K+KE GY
Sbjct: 415 LRGMMSLRGIRKVPGCSSIEINNVVYEFVASN---DRKPEFEAIYKQLDNLIKKLKENGY 471

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V G T +   D+E E +E  V  HSE+LALAFGL++ P   T+RI+KNLR+C DCH+ FK
Sbjct: 472 VTG-TDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFK 530

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++S + +R  VVRD NRFHHF  G CSC D+W
Sbjct: 531 VLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/573 (34%), Positives = 327/573 (57%), Gaps = 42/573 (7%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPNVVSYTSLMAGYIN 105
           +HS  L+ G  S+      L++ Y +    Q    A ++F+ M + +V+S+T+L++GY+ 
Sbjct: 276 LHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQ 335

Query: 106 MG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
            G Q    + LF +ML   + PN  T+++++K+C+ ++D  +G+Q+H H+          
Sbjct: 336 SGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHT 395

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++LV MY +   ++ ARRVF+ +  R+++   +                       + 
Sbjct: 396 VGNALVSMYAESGCMEEARRVFNQLYERSMIPCIT-----------------------EG 432

Query: 225 RDRPNQHML------------ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           RD P  H +            AS+I+A AS+G L  G+  H + +++G   +  V+++LV
Sbjct: 433 RDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLV 492

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            MY++CG +  + + FN + + +V+++TSMI G AK+G    +L LF++MI  G+KPNDV
Sbjct: 493 SMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDV 552

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           T++ VL ACSH GLV EG ++  SM R +G+IP  +HY C+VD+L R+G + EA +    
Sbjct: 553 TYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINE 612

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + +  D   L+W TLL A R H  +++    +  ++E   +    YV LSN YA AG W+
Sbjct: 613 MPLKADA--LVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWD 670

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +RS M+   ++KE G SW+E+ + T+ F AG+    R  ++   L  L R++K  G
Sbjct: 671 EVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMG 730

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T +V  D+ DE +E+ +  HSE++A+AFGLI+      IRI KNLR+C DCH   
Sbjct: 731 YV-PDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAI 789

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +S    R+ ++RD NRFH  ++G CSCG++W
Sbjct: 790 KYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 162/314 (51%), Gaps = 11/314 (3%)

Query: 48  SVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYIN 105
           ++H  +L+   L  +    N L+  Y R      AR +FD M    ++VS+T++ +    
Sbjct: 69  ALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLAR 128

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC---SMLADLITGKQIHTHIETFGFQYN 162
            G  + +LLL  +ML + + PN +T      AC    +   +        H     +  +
Sbjct: 129 NGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGL-WGTD 187

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V S+L+DM  +  D+  AR+VFD +  + VV WT +I  + Q     EA+E+F +F  
Sbjct: 188 VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDF-L 246

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG--- 279
           +    P+++ ++S+I+AC  LG +  G   H + +R G   +  V+  LVDMYAK     
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQ 306

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS-LDLFNEMISRGIKPNDVTFVGVL 338
           +++Y++KVF R+    V+++T++I G  + G+     + LF EM++  IKPN +T+  +L
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 339 HACSHSGLVDEGIQ 352
            +C+     D G Q
Sbjct: 367 KSCASISDHDSGRQ 380



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 182/366 (49%), Gaps = 21/366 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI+   R      AR++FD ++E  VV +T L++ Y+     + A+ LF   L +   P+
Sbjct: 194 LIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPD 253

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN---DVDGARR 184
            +T +++I AC+ L  +  G Q+H+     G   +  V   LVDMY K N    +D A +
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANK 313

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNA-QGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           VF+ M   +V+SWT++I  + Q+  Q ++ + +F E   +S  +PN    +S++ +CAS+
Sbjct: 314 VFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESI-KPNHITYSSILKSCASI 372

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
               SG+  H  V++S       V +ALV MYA+ G +  + +VFN++   S++   +  
Sbjct: 373 SDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITE- 431

Query: 304 VGAAKYGLGR-FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
                   GR F LD  + ++   +  +  TF  ++ A +  G++ +G Q L +M  K G
Sbjct: 432 --------GRDFPLD--HRIVRMDVGISSSTFASLISAAASVGMLTKG-QQLHAMSLKAG 480

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
              D      +V M  R G L++A    +S     D   + W +++S    HG  + A+ 
Sbjct: 481 FGSDRFVSNSLVSMYSRCGYLEDA---CRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 423 ASNQLI 428
             + +I
Sbjct: 538 LFHDMI 543



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 12/274 (4%)

Query: 143 DLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSI 200
           DL  G+ +H  +        + VV +SL+ +Y +C  V  AR VFD M G R++VSWT++
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV-RS 259
               A+N     +L +  E   +S   PN + L +  +AC               +V + 
Sbjct: 123 ASCLARNGAERGSLLLIGEM-LESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 260 GCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           G    DV V SAL+DM A+ G +  + KVF+ +   +VV +T +I    +      +++L
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F + +  G +P+  T   ++ AC+  G V  G+Q L S+  + G+  DA     +VDM  
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMYA 300

Query: 379 RTG---RLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           ++     +D A K+ + +   P    + W  L+S
Sbjct: 301 KSNIGQAMDYANKVFERM---PKNDVISWTALIS 331



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 2/188 (1%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R +   S  T A  I        L     +H+  LK+GF S+ F  N L++ Y R   
Sbjct: 441 IVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGY 500

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
            + A + F+E+ + NV+S+TS+++G    G  + AL LF  M+   V PN+ T+  V+ A
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 138 CSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVV 195
           CS +  +  GK+    ++   G    +   + +VD+  +   V  A    + M  + + +
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADAL 620

Query: 196 SWTSIIVA 203
            W +++ A
Sbjct: 621 VWKTLLGA 628


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/538 (36%), Positives = 310/538 (57%), Gaps = 24/538 (4%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI+ Y +      A++LFD + + +VVS+T ++AG I   +       F +ML   ++PN
Sbjct: 232 LIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPN 291

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E T  ++I  C  +  L  GK  H ++   GF  +L + ++L+DMYGKC  V  AR +F+
Sbjct: 292 EITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFN 351

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            +  ++V  W+ +I A+A  +   +   +F E    +  +PN   + S+++ CA  G L 
Sbjct: 352 GVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEM-LNNDVKPNNVTMVSLLSLCAEAGALD 410

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            GK  H  + R G E + ++ +AL++MYAKCG V  +  +FN      +  + +M+ G +
Sbjct: 411 LGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFS 470

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G G+ +L+LF+EM S G++PND+TFV + HACSHSGL++                   
Sbjct: 471 MHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME------------------- 511

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
            HY C+VD+LGR G LDEA+ + +++ + P+   ++WG LL+A +LH  + +   A+ ++
Sbjct: 512 -HYGCLVDLLGRAGHLDEAHNIIENMPMRPN--TIIWGALLAACKLHKNLALGEVAARKI 568

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
           +E + Q     V  SN YA A  W +V S+R  M  +G+ KEPG SW+E+    + F +G
Sbjct: 569 LELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSG 628

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +    + ++V  ++ E+  K++E GY    T  V +++++E +E  +  HSE+LA AFGL
Sbjct: 629 DKACTQTTKVYEMVTEMCIKLRESGYT-PNTAAVLLNIDEEEKESALSYHSEKLATAFGL 687

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS   G  IRI+KNLR+C DCH   KL+S I  R  +VRD NRFHHF  G CSC  +W
Sbjct: 688 ISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 214/422 (50%), Gaps = 12/422 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H    K+GF S+ F  N L+N Y +      AR +FD+M E +VVS+T+++  Y+    
Sbjct: 110 LHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKA 169

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVC 166
              AL L ++M    V  +     ++I     L D+ +G+ +H +I       +  + + 
Sbjct: 170 FGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMT 229

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L+DMY K   +  A+R+FD +  R+VVSWT +I    ++ +  E  + F     + + 
Sbjct: 230 TALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM-LEEKL 288

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+  L S+I  C  +G L  GK  H  ++R+G   +  + +AL+DMY KCG V Y+  
Sbjct: 289 FPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARA 348

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +FN +    V  ++ +I   A         +LF EM++  +KPN+VT V +L  C+ +G 
Sbjct: 349 LFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGA 408

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWG 405
           +D G +   +   ++G+  D    T +++M  + G +  A  L  +++Q D      +W 
Sbjct: 409 LDLG-KWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIR----MWN 463

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAGEWENVHSLRSEMKR 463
           T+++   +HG    A+E  +++ ES+    N   +V++ +  + +G  E+   L   + R
Sbjct: 464 TMMAGFSMHGCGKEALELFSEM-ESHGVEPNDITFVSIFHACSHSGLMEHYGCLVDLLGR 522

Query: 464 TG 465
            G
Sbjct: 523 AG 524



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 179/360 (49%), Gaps = 12/360 (3%)

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +Y  L++ Y N   PQ +   +  M  N     + F   +++KAC+  +    G+++H  
Sbjct: 54  NYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGF 113

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
            +  GF  ++ VC++L++MY KC  +  AR VFD M  R+VVSWT+++  + ++    EA
Sbjct: 114 AQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEA 173

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDV-VASAL 271
           L + RE  +    + +   L S+I    +L  + SG+  HG +VR+ G E  +V + +AL
Sbjct: 174 LRLVREMQFVGV-KLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTAL 232

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMY K G +  + ++F+R+S  SVV++T MI G  +          FN M+   + PN+
Sbjct: 233 IDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNE 292

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +T + ++  C   G +D G +   +   + G        T ++DM G+ G++  A  L  
Sbjct: 293 ITLLSLITECGFVGTLDLG-KWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFN 351

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES-NQQVANAYVTLSNTYALAGE 450
            ++        +W  L+SA   +  V    +  N  +E  N  V    VT+ +  +L  E
Sbjct: 352 GVK---KKDVKIWSVLISA---YAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAE 405



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 147/318 (46%), Gaps = 40/318 (12%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+ +L++GF  +   +  LI+ Y +  +   AR LF+ + + +V  ++ L++ Y ++   
Sbjct: 315 HAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCM 374

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
                LF +ML N V PN  T  +++  C+    L  GK  H +I   G + ++++ ++L
Sbjct: 375 DQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETAL 434

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           ++MY KC DV  AR +F+    R++  W +++   + +  G EALE+F E      + PN
Sbjct: 435 INMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVE-PN 493

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF- 288
                S+ +AC+            G++   GC         LVD+  + G ++ +  +  
Sbjct: 494 DITFVSIFHACSH----------SGLMEHYGC---------LVDLLGRAGHLDEAHNIIE 534

Query: 289 NRISNPSVVTYTSMIVGAAKY---GLGR------FSLD--------LFNEMISRGIKPND 331
           N    P+ + + +++     +    LG         LD        L + + +   + ND
Sbjct: 535 NMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWND 594

Query: 332 VTFVGVLHACSHSGLVDE 349
           VT   V  A SHSG+  E
Sbjct: 595 VT--SVREAMSHSGMKKE 610


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 323/549 (58%), Gaps = 11/549 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++KSGF  +++ +N LI+ Y   K    A+QLF    + +VVS+ +++ GY+  G+
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGE 81

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
                ++F +M+   V     ++ T+I   +++  +   K++   +     + NLV  +S
Sbjct: 82  MGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKRLFDEMP----ERNLVSWNS 133

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           ++  + KC +V+ A  +F  M CR+VVSW S++  +AQ  + +EAL +F +       +P
Sbjct: 134 MLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV-KP 192

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +  + S+++ACA LG L  G   H  +  +  E N +V +ALVDMYAKCG ++ + +VF
Sbjct: 193 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 252

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N + +  V+ + ++I G A +G  + +  LF EM    ++PND+TFV +L ACSH+G+VD
Sbjct: 253 NAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVD 312

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + LD M   YGI P  +HY CV+D+L R G L+EA +L  ++ ++P+  P   G LL
Sbjct: 313 EGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPN--PSALGALL 370

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              R+HG  ++      +LI      +  Y+ LSN YA A +W++   +R+ MK  GI K
Sbjct: 371 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 430

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            PG S +E++   + F AG+      +++   L E+  ++K        TG V +D+E+E
Sbjct: 431 VPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEE 490

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E  + +HSE+LA+A+GL+ +     IRI+KNLR+CRDCH V KLIS +  R+ +VRD 
Sbjct: 491 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDR 550

Query: 589 NRFHHFRNG 597
           NRFHHF +G
Sbjct: 551 NRFHHFEDG 559



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 158/304 (51%), Gaps = 15/304 (4%)

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            T+  VIKAC+  +    G  +HTH+   GF+ +  + +SL+ +Y    D+  A+++F L
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 189 MGCRNVVSWTSIIVAHAQNAQ-GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
              R+VVSW ++I  + +  + GH  +   R      RD  + +   ++IN  A +G++ 
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMV---CRDVISWN---TIINGYAIVGKID 114

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
             K     +     E N V  ++++  + KCG+V  +  +F+ +    VV++ SM+   A
Sbjct: 115 EAK----RLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYA 170

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
           + G    +L LF++M + G+KP + T V +L AC+H G +D+G+ HL +      I  ++
Sbjct: 171 QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNS 229

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
              T +VDM  + G++  A ++  +++       L W T+++   +HG V  A +   ++
Sbjct: 230 IVGTALVDMYAKCGKISLATQVFNAME---SKDVLAWNTIIAGMAIHGHVKEAQQLFKEM 286

Query: 428 IESN 431
            E++
Sbjct: 287 KEAS 290


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/573 (35%), Positives = 318/573 (55%), Gaps = 43/573 (7%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ +     +H  I+ +    + F  N L N Y +      AR LFD M+  NV
Sbjct: 162 LHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNV 221

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S+++GY+  GQP+    LF +M  + + P++ T + ++ A                
Sbjct: 222 VSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA---------------- 265

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                              Y +C  +D A + F  +  ++ V WT+++V  AQN +  +A
Sbjct: 266 -------------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDA 306

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L +FRE   ++  RP+   ++SV+++CA L  L  G+  HG  V  G + + +V+SALVD
Sbjct: 307 LLLFREMLLENV-RPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVD 365

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KCG    +  VF R+   +V+++ SMI+G A+ G    +L L+ EM+   +KP+++T
Sbjct: 366 MYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNIT 425

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           FVGVL AC H+GLV+ G  +  S+ + +G+ P   HY+C++++LGR G +D+A  L KS+
Sbjct: 426 FVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSM 485

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
             +P+   L+W TLLS  R++  V+    A+  L E +   A  Y+ LSN YA  G W++
Sbjct: 486 TFEPNC--LIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKD 543

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V ++RS MK   I K    SW+EI +Q + F A +       ++   L  L +K++E G+
Sbjct: 544 VAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGF 603

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT-IRIMKNLRMCRDCHDVF 572
               T LV  DV +E + + +  HSE+LALAF LI  P G T IRIMKN+R+C DCH   
Sbjct: 604 T-PDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFM 662

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +S I+ R  ++RD+NRFHHF  G CSC D W
Sbjct: 663 KFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 154/333 (46%), Gaps = 37/333 (11%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F+ N +++ Y +    +  R +FD+M   + VSY +++AG+   G    AL  F +M 
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                  ++T  +V+ ACS L D+  GKQIH  I       ++ V ++L +MY KC  +D
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD 207

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR +FD M  +NVVSW S+I  + QN Q     ++F E                     
Sbjct: 208 QARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQ------------------- 248

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
                             SG   + V  S ++  Y +CG ++ + K F  I     V +T
Sbjct: 249 -----------------SSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWT 291

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           +M+VG A+ G    +L LF EM+   ++P++ T   V+ +C+    + +G Q +      
Sbjct: 292 TMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQG-QAVHGKAVI 350

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           +G+  D    + +VDM  + G   +A+ + K +
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRM 383


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 295/512 (57%), Gaps = 10/512 (1%)

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            S++  Y+++ +   +L +F  M    + P+  TF  V+KA + L D   GK IH  +  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF  ++   ++LV +Y  C  +  A ++FD M  RN V+W ++I  +  N +  +A++ 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           FR        +P++  +  V++AC+ LG    GK  H  +  +    N  V +AL+DMYA
Sbjct: 178 FRGM-LADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG+V   +KVF  I   +V T+  +I G A  G G  +L  F+ M+    KP++VTF+G
Sbjct: 237 KCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLG 296

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           VL AC H GLV EG     SM +++G+ P  +HY C+VD+LGR G L+EA +L +S+ ++
Sbjct: 297 VLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE 356

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           PD  P++W  LL A R+HG   +      +LIE        YV LSN Y+    W  V  
Sbjct: 357 PD--PIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGK 414

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE---RKMKERGY 513
           LR  M   GI K PGCS +EI +  Y F A N   +R  E  ++ ++L+   +K+KE GY
Sbjct: 415 LRGMMNLRGIRKVPGCSSIEINNVVYEFVASN---DRKPEFEAIYKQLDNLIKKLKENGY 471

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           V G T +   D+E E +E  V  HSE+LALAFGL++ P   T+RI+KNLR+C DCH+ FK
Sbjct: 472 VTG-TDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFK 530

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++S + +R  VVRD NRFHHF  G CSC D+W
Sbjct: 531 VLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 334/575 (58%), Gaps = 27/575 (4%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           ++++ E + L  +  V   + ++          ++I+ Y +  +   AR+LFDEM   NV
Sbjct: 153 VRRIDEARGLFDIMPVKDVVART----------NMISGYCQEGRLAEARELFDEMPRRNV 202

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+T++++GY+  GQ  +A  LF+ M       NE ++       +ML     G +I   
Sbjct: 203 ISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWT------AMLMGYTQGGRIEEA 252

Query: 154 IETFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            E F       +V C++++  +G+  +V  AR+VFD +  ++  +W+++I  + +     
Sbjct: 253 SELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEV 312

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL +F     +   + N   L SV++ CASL  L  G+  H  +V+S  + +  VAS L
Sbjct: 313 EALNLFALMQREGV-QSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVL 371

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + MY KCG +  + ++F+R S   +V + S+I G A++GL   +L +F+EM S G+  + 
Sbjct: 372 ITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDG 431

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           VTFVGVL ACS++G V EG++  +SM  KY + P  +HY C+VD+LGR G +++A  L +
Sbjct: 432 VTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQ 491

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
            + V+ D   ++WG LL A R H  +++A  A+ +L++   + A  Y+ LSN YA  G W
Sbjct: 492 KMPVEADA--IIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRW 549

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG-NALFERGSEVLSLLRELERKMKE 510
            +V  LR  M+   + K PGCSW+E+  + + F  G +      S ++ +L +L+  ++E
Sbjct: 550 GDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLRE 609

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GY    +  V  DV++E +   +G HSERLA+AFGL+ +P+G+ IR+MKNLR+C DCH 
Sbjct: 610 AGYY-PDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHS 668

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             KLI+ I  R+ ++RD NRFHHF++G CSC D+W
Sbjct: 669 AIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 175/377 (46%), Gaps = 35/377 (9%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT + N LI+ YV+ +    AR+ FD M E NVVS+T+++ GY+  G    A  LF +M 
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM- 135

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCND 178
                P +     V+    ML  LI  ++I      F      ++V  ++++  Y +   
Sbjct: 136 -----PEK----NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGR 186

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +  AR +FD M  RNV+SWT++I  + QN Q   A ++F E   +  +     ML     
Sbjct: 187 LAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLF-EVMPEKNEVSWTAML----- 240

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
               +G    G++     +        VVA +A++  + + G V  + +VF++I      
Sbjct: 241 ----MGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDG 296

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDS 356
           T+++MI    + G    +L+LF  M   G++ N  + + VL  C+    +D G Q H + 
Sbjct: 297 TWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAEL 356

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP---LLWGTLLSASRL 413
           +  ++    D    + ++ M  + G       L K+ Q+     P   ++W ++++    
Sbjct: 357 VKSQFD--SDVFVASVLITMYVKCG------DLVKARQIFDRFSPKDIVMWNSIITGYAQ 408

Query: 414 HGRVDIAVEASNQLIES 430
           HG V+ A++  +++  S
Sbjct: 409 HGLVEEALQVFHEMCSS 425



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 159/368 (43%), Gaps = 67/368 (18%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           S     N  I  Y R+ + + AR++FDEM +  +VS+ S++AGY    +P+ A  LF KM
Sbjct: 14  SVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM 73

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                                                   + N V  + L+  Y K   V
Sbjct: 74  P---------------------------------------ERNTVSWNGLISGYVKNRMV 94

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             AR+ FD M  RNVVSWT+++  + Q     EA  +F +        P ++    V++ 
Sbjct: 95  SEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM-------PEKN----VVSW 143

Query: 240 CASLGRLVS-GKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
              LG L+   ++     +       DVVA + ++  Y + G +  + ++F+ +   +V+
Sbjct: 144 TVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVI 203

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++T+MI G  + G    +  LF  M  +    N+V++  +L   +  G ++E  +  D+M
Sbjct: 204 SWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAM 259

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
             K  +  +A     ++   G+ G + +A ++   I+   DG    W  ++   +++ R 
Sbjct: 260 PVKAVVACNA-----MILGFGQNGEVAKARQVFDQIREKDDG---TWSAMI---KVYERK 308

Query: 418 DIAVEASN 425
              VEA N
Sbjct: 309 GFEVEALN 316


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/505 (38%), Positives = 297/505 (58%), Gaps = 5/505 (0%)

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY   G  + ALL++ +ML N + P  F F+T +KAC+ L +L  G+ +H  +       
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + VV + L+ +Y +C   +   +VFD M  RNV SW S+I    +  +  EAL++FR   
Sbjct: 64  DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            +     +   L +++  CA +  L+SGK  H  +V+S    + +V ++LVDMY KCG V
Sbjct: 124 REGMGF-SWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVV 182

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           +Y  ++F+ + +  + ++ +M+ G A  G  R ++DLFNEM S GI+P+DVTF+ +L  C
Sbjct: 183 DYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGC 242

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH+GL ++G +    M   +G+ P  +HY C+VDMLGR GR+D A  + K++ +   G  
Sbjct: 243 SHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGS- 301

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +WG+LL++ RLH  V +A   +N+L E        YV LSN YA AG W++V+ +R  M
Sbjct: 302 -IWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMM 360

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGL 520
           +   I KE GCSW++++++ ++F AG    F    E   +  +L   M+E GY+   T +
Sbjct: 361 QTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIP-NTDV 419

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  DV +E +   V  HSERLA  F LI    G+ IRI KNLR+C DCH   K++S +  
Sbjct: 420 VLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTG 479

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R  V+RD NRFHHF+ G+CSC D+W
Sbjct: 480 RVIVLRDTNRFHHFKEGACSCNDYW 504



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 5/254 (1%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L  L     VH++++KS    +    N L+  Y + +      ++FD+M 
Sbjct: 33  FSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMP 92

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E NV S+ SL++G++   +   AL +F++M    +  +  T  T++  C+ +  L++GK+
Sbjct: 93  ERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKE 152

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  I     + +++V +SLVDMY KC  VD  RR+FD M  +++ SW +++  +A N  
Sbjct: 153 IHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGY 212

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVA 268
              A+++F E       RP+     ++++ C+  G    G K+ H + +  G   +    
Sbjct: 213 MRVAMDLFNEM-ASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHY 271

Query: 269 SALVDMYAKCGSVN 282
           + LVDM  + G ++
Sbjct: 272 ACLVDMLGRAGRID 285



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           L+S   +H++I+KS    +   LN L++ YV+       R+LFD M   ++ S+ +++ G
Sbjct: 147 LLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTG 206

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET-FGFQY 161
           Y   G  ++A+ LF +M    + P++ TF  ++  CS       G+++   +E  FG   
Sbjct: 207 YAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSP 266

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSII 201
           +L   + LVDM G+   +D A  V   M  +   S W S++
Sbjct: 267 SLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLL 307


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 331/609 (54%), Gaps = 45/609 (7%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN--VV 94
           L +   L  L  +H++++     SN      LI+CY+  K    AR LFD    P+  + 
Sbjct: 81  LNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIK 140

Query: 95  SYTSLMAGYINMGQPQIALLLFQKML---GNL-VWPNEFTFATVIKACSMLADLITGKQI 150
            +  ++  Y  +   Q  + LF +ML   G + V P+E+TF  VI +CS    LI G+ +
Sbjct: 141 LWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIV 200

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H  +   GF+ NL V +S+++M      ++ AR+VF+ M  R+V SWTS++  +A++ + 
Sbjct: 201 HGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEM 260

Query: 211 HEALEMFREF-----------------------------NYQSRDR--PNQHMLASVINA 239
             A E+F                                N    DR  PN+ +L  V++A
Sbjct: 261 DRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSA 320

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           CA LG L  G   H  + + G   +  +++AL+DMYAKCG ++ + +VFN I    V+++
Sbjct: 321 CAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSF 380

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           TSMI G + +GLG+ +L +F +M+   + PN++T +GVL+ CSHSGLV+EG   L +M  
Sbjct: 381 TSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMES 440

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            +GI P  +HY C +D+LGR G L+ A ++ K++ ++PD   ++W  LLSASR+H  V++
Sbjct: 441 LWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPD--IVIWRALLSASRIHHNVNL 498

Query: 420 A---VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
               +    QL  S+       V LSN YA  G WE V  +R  M        PGCSW+E
Sbjct: 499 GEQIISHIGQLKSSDHN--GGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIE 556

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGL 536
           +    + F   + L  +  E+ + L E+ +++ + GY      + F D+ +E +E+ V  
Sbjct: 557 VNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSF-DLNEEEKEQAVAW 615

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+AFGL+S   G  IRI+KNLR C DCH   K IS +  R+ VVRD +RFH F  
Sbjct: 616 HSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIE 675

Query: 597 GSCSCGDFW 605
           G CSC DFW
Sbjct: 676 GDCSCKDFW 684


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 324/576 (56%), Gaps = 35/576 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N    N +I  + +    + A +LF+EM + ++VS+++L++ Y      + AL+LF++M 
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG------ 174
            N +  +E    +V+ ACS L  +ITGK +H  +   G +  + + ++L+ MY       
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 175 -------------------------KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
                                    KC +++ AR +FD M  ++ VSW+++I  +AQ  +
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             E L +F+E   +   +P++ +L SVI+AC  L  L  GK  H  + ++G + N ++ +
Sbjct: 402 FTETLVLFQEMQIEGT-KPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGT 460

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            L++MY K G V  + +VF  +    V T+ ++I+G A  GL   SL  F+EM   G+ P
Sbjct: 461 TLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTP 520

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N++TFV VL AC H GLVDEG +H +SM +++ I P+ KHY C+VD+LGR G L EA +L
Sbjct: 521 NEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEEL 580

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            +S+ + PD     WG LL A + +G  +       +L+E +       V LSN YA  G
Sbjct: 581 IESMPMAPDVST--WGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKG 638

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W +V  +R  M++ G+ K PGCS +E   + + F AG+    +   +  +L E+ +K+K
Sbjct: 639 NWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLK 698

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GY    T  V +D+++E +E  +  HSE+LA+AFGLI+I     IRI+KNLR+C DCH
Sbjct: 699 LEGY-APDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCH 757

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              KLIS    R+ VVRD +RFHHF+ GSCSC D+W
Sbjct: 758 TAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 218/488 (44%), Gaps = 98/488 (20%)

Query: 36  QLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR--QLFDEMLEPNV 93
            LQ+C+++     + S+++ SGF  ++F  + L+     L    + +  Q+F  +  PN 
Sbjct: 32  HLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNG 91

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
               ++M GY+    P  A+ +++ ML + V  + +T+  + ++CS+      GK I  H
Sbjct: 92  FICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDH 151

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF--------------------------- 186
           +   GF  ++ + ++L++MY  C ++  AR+VF                           
Sbjct: 152 VLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEA 211

Query: 187 ----DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN-------------YQSRDRPN 229
               D M  RNV++  S+IV   +     EA ++F E               Y+  +   
Sbjct: 212 KDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYE 271

Query: 230 QHML-----------------ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           + ++                  SV++AC+ L  +++GK+ HG+VV+ G E    + +AL+
Sbjct: 272 EALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALI 331

Query: 273 DMYA-------------------------------KCGSVNYSDKVFNRISNPSVVTYTS 301
            MY+                               KCG +  +  +F+ + +   V++++
Sbjct: 332 HMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSA 391

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G A+      +L LF EM   G KP++   V V+ AC+H   +D+G + + +  RK 
Sbjct: 392 MISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKN 450

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G+  +    T +++M  + G +++A ++ K ++   + G   W  L+    ++G VD ++
Sbjct: 451 GLKINIILGTTLINMYMKLGCVEDALEVFKGLE---EKGVSTWNALILGLAMNGLVDKSL 507

Query: 422 EASNQLIE 429
           +  +++ E
Sbjct: 508 KTFSEMKE 515



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I     C+ +++   + SE        +  + N +I+ YV+  + + AR LFD M + +
Sbjct: 330 LIHMYSSCEEVVTAQKLFSE----SCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKD 385

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            VS++++++GY    +    L+LFQ+M      P+E    +VI AC+ LA L  GK IH 
Sbjct: 386 NVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHA 445

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           +I   G + N+++ ++L++MY K   V+ A  VF  +  + V +W ++I+  A N    +
Sbjct: 446 YIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDK 505

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASAL 271
           +L+ F E        PN+    +V+ AC  +G +  G +  + ++       N      +
Sbjct: 506 SLKTFSEMKEHGV-TPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCM 564

Query: 272 VDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYG 310
           VD+  + G +  ++++   +   P V T+ +++    KYG
Sbjct: 565 VDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYG 604


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 321/558 (57%), Gaps = 5/558 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  IL+S    N    N LI  Y +    + ++ LF  M   +VVS+ +++A Y   G 
Sbjct: 192 IHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGH 251

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A  LF +M      P+ +TF++++ AC+    L  G+ +H  I   GF  +  + ++
Sbjct: 252 DKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNN 311

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ M+ +C  ++ ARR F  +  + + +W +++ A+AQ  +G +AL +++    +    P
Sbjct: 312 LISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFT-P 370

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++   +SV+++CASLG L  GK  H      G E + ++ +ALV+MYAKCGS+  + K F
Sbjct: 371 DRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSF 430

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ISN  VV++++MI  +A++G    +L+L + M  +GI  N+VT   VLHACSH G + 
Sbjct: 431 DGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLY 490

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EGI +   + + +GI  D ++    +D+LGR G L EA  +  ++        L+  TLL
Sbjct: 491 EGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALV--TLL 548

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              ++HG V      + +++    +   +YV L+N YA AG W++V  LR  M++ G+ +
Sbjct: 549 GGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKR 608

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER-GYVGGKTGLVFVDVED 527
           + GCS +E RD+ Y F  G+    R  E+ + L  L  +MKE  GYV   T  VF DV D
Sbjct: 609 QTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVP-DTRDVFHDVSD 667

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +EE++  HSE++A+ FGLI+ P G T+RI+KNLR+C DCH V KL S I  R  +VRD
Sbjct: 668 DKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRD 727

Query: 588 VNRFHHFRNGSCSCGDFW 605
             RFHHF  G CSCGD+W
Sbjct: 728 GTRFHHFEGGICSCGDYW 745



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 187/352 (53%), Gaps = 8/352 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +TF  N +I  Y + K  + ARQ+FD + + N  S++ L+  Y+     Q AL ++++M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              +  + +T ++V+ AC+ L D+  G+ +    E  GF+ ++VV +SL+ ++ KC  ++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 181 GARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
            A  VF  MG  R+++S T++I A+ ++ +   AL+ + +   Q  + P+    A+++ A
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLE-PDAFTYAAILGA 179

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C+S   L+ GK  H  ++ S    N  V +AL+ MYAKCGS+  S  +F  +    VV++
Sbjct: 180 CSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSW 239

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG-IQHLDSMY 358
            +MI     YG  + +  LF+ M + G  P+  TF  +L AC+    +++G + H+    
Sbjct: 240 NAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITA 299

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
           R  G   D      ++ M  R G L+ A +   SI+    G    W T+L+A
Sbjct: 300 R--GFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGA---WNTMLAA 346


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 276/442 (62%), Gaps = 4/442 (0%)

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           +V ++LVDMY K    D A  VF+ M  ++V+SWTS++     N    EAL +F E    
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+Q ++A+V++ACA L  L  GK  H   ++SG   +  V ++LV MYAKCG +  
Sbjct: 63  GI-HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           ++KVF+ +    V+T+T++IVG A+ G GR SL+ +N+MI+ G+KP+ +TF+G+L ACSH
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSH 181

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           +GLV+ G  +  SM   YGI P  +HY C++D+LGR+G+L EA +L   + V PD    +
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDA--TV 239

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W  LL+A R+HG V++   A+N L E   + A  YV LSN Y+ AG+WE     R  MK 
Sbjct: 240 WKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKL 299

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            G+ KEPGCSW+E+  + + F + +    R +E+ S + E+   +KE GYV         
Sbjct: 300 RGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYV-PDMNFALH 358

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+++E +E  +  HSE+LA+AFGL+++P G  IRI KNLR+C DCH   K +S +  R  
Sbjct: 359 DMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHV 418

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           ++RD N FHHFR G+CSC D+W
Sbjct: 419 ILRDSNCFHHFREGACSCSDYW 440



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 161/331 (48%), Gaps = 38/331 (11%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N L++ Y +      A  +F++M + +V+S+TSL+ G ++ G  + AL LF +M    + 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P++   A V+ AC+ L  L  GKQ+H +    G   +L V +SLV MY KC  ++ A +V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD M  ++V++WT++IV +AQN +G E+L  + +    S  +P+      ++ AC+    
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBM-IASGVKPDFITFIGLLFACSH--- 181

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
             +G V HG   RS               Y +     Y  K       P    Y  MI  
Sbjct: 182 --AGLVEHG---RS---------------YFQSMEEVYGIK-------PGPEHYACMIDL 214

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
             + G    + +L N+M    ++P+   +  +L AC   G V+ G +  ++++    + P
Sbjct: 215 LGRSGKLMEAKELLNQM---AVQPDATVWKALLAACRVHGNVELGERAANNLFE---LEP 268

Query: 366 -DAKHYTCVVDMLGRTGRLDEAYKLAKSIQV 395
            +A  Y  + ++    G+ +EA K  + +++
Sbjct: 269 KNAVPYVLLSNLYSAAGKWEEAAKTRRLMKL 299



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
           ++V +ALVDMYAK G  +Y+  VF ++++  V+++TS++ G    G    +L LF EM  
Sbjct: 2   ELVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            GI P+ +    VL AC+   +++ G Q + + + K G+         +V M  + G ++
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQ-VHANFLKSGLGSSLSVDNSLVSMYAKCGCIE 120

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           +A K+  S+++      + W  L+     +GR   ++   N +I S
Sbjct: 121 DANKVFDSMEIQ---DVITWTALIVGYAQNGRGRESLNFYNBMIAS 163



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L  L     VH+  LKSG  S+    N L++ Y +    + A ++FD M   +V
Sbjct: 75  LSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDV 134

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +++T+L+ GY   G+ + +L  +  M+ + V P+  TF  ++ ACS    +  G+     
Sbjct: 135 ITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQS 194

Query: 154 I-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
           + E +G +      + ++D+ G+   +  A+ + + M  + +   W +++ A
Sbjct: 195 MEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAA 246


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/627 (32%), Positives = 339/627 (54%), Gaps = 79/627 (12%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKT----QVARQLFDEMLEPN------------- 92
           H+  LKSG    T   N L++ Y +   +      AR++FDE+LE +             
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 93  -------------------VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
                              +V+Y ++++GY+N G  Q AL + ++M+ + +  +EFT+ +
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 134 VIKACSMLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           VI+AC+    L  GKQ+H ++   E F F ++    +SLV +Y KC   D AR +F+ M 
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMP 347

Query: 191 CRNVVSWTSIIVAH-------------------------------AQNAQGHEALEMFRE 219
            +++VSW +++  +                               A+N  G E L++F  
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
              +  + P  +  +  I +CA LG   +G+  H  +++ G + +    +AL+ MYAKCG
Sbjct: 408 MKREGFE-PCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCG 466

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
            V  + +VF  +     V++ ++I    ++G G  ++D++ EM+ +GI+P+ +T + VL 
Sbjct: 467 VVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLT 526

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           ACSH+GLVD+G ++ DSM   Y I P A HY  ++D+L R+G+  +A  + +S+   P  
Sbjct: 527 ACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTA 586

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
              +W  LLS  R+HG +++ + A+++L     +    Y+ LSN +A  G+WE V  +R 
Sbjct: 587 E--IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRK 644

Query: 460 EMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTG 519
            M+  G+ KE  CSW+E+  Q + F   +        V   L++L ++M+  GYV   T 
Sbjct: 645 LMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVP-DTS 703

Query: 520 LVFVDVE-DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
            V  DVE D  +E+++  HSE++A+AFGL+ +P G TIRI KNLR C DCH+ F+ +S +
Sbjct: 704 FVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWV 763

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
           V+RD ++RD  RFHHFRNG CSCG+FW
Sbjct: 764 VQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 196/483 (40%), Gaps = 107/483 (22%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH  I+  GF      LN LI+ Y +  +   ARQLFDE+ EP+ ++ T++++GY   G
Sbjct: 35  AVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASG 94

Query: 108 QPQI---------------------------------ALLLFQKMLGNLVWPNEFTFATV 134
              +                                 A+ LF KM      P+ FTFA+V
Sbjct: 95  DITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASV 154

Query: 135 IKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND----VDGARRVFDLM 189
           +   +++A D     Q H      G  Y   V ++LV +Y KC      +  AR+VFD +
Sbjct: 155 LAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEI 214

Query: 190 GCRNVVSWTSIIVAHAQNA---------QG-----------------------HEALEMF 217
             ++  SWT+++  + +N          +G                        EALEM 
Sbjct: 215 LEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV 274

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           R     S    ++    SVI ACA+ G L  GK  H  V+R   +F+    ++LV +Y K
Sbjct: 275 RRM-VSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYK 332

Query: 278 CGSVNYSDKVFNRISNPSVVTYTS-------------------------------MIVGA 306
           CG  + +  +F ++    +V++ +                               MI G 
Sbjct: 333 CGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGL 392

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A+ G G   L LF+ M   G +P D  F G + +C+  G    G Q   +   K G    
Sbjct: 393 AENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-QQYHAQLLKIGFDSS 451

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
                 ++ M  + G ++EA ++ +++   P    + W  L++A   HG    AV+   +
Sbjct: 452 LSAGNALITMYAKCGVVEEARQVFRTM---PCLDSVSWNALIAALGQHGHGAEAVDVYEE 508

Query: 427 LIE 429
           +++
Sbjct: 509 MLK 511



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 172/413 (41%), Gaps = 85/413 (20%)

Query: 131 FATVIKACSML--ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           +A  ++ C  L    L   + +H +I TFGFQ    + + L+D+Y K ++++ AR++FD 
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDE 74

Query: 189 MG---------------------------------CRNVVSWTSIIVAHAQNAQGHEALE 215
           +                                   R+ V + ++I   + N  G+ A+ 
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA-HGVVVRSGCEFNDVVASALVDM 274
           +F +  ++   +P+    ASV+   A +       V  H   ++SG  +   V++ALV +
Sbjct: 135 LFCKMKHEGF-KPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSV 193

Query: 275 YAKCGS----VNYSDKVFNRI--------------------------------SNPSVVT 298
           Y+KC S    ++ + KVF+ I                                 N  +V 
Sbjct: 194 YSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVA 253

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           Y +MI G    G  + +L++   M+S GI+ ++ T+  V+ AC+ +GL+  G Q    + 
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313

Query: 359 RKYGIIPDAKHY-TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
           R+      + H+   +V +  + G+ DEA  + + +   P    + W  LLS     G +
Sbjct: 314 RREDF---SFHFDNSLVSLYYKCGKFDEARAIFEKM---PAKDLVSWNALLSGYVSSGHI 367

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
               EA     E  ++   +++ + +  A  G  E    L S MKR G   EP
Sbjct: 368 G---EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF--EP 415



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 42/154 (27%)

Query: 227 RPNQHMLASVIN-------ACASLGR--LVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +PN  ++ ++ N        C  L R  L   +  HG ++  G +    + + L+D+Y K
Sbjct: 2   QPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCK 61

Query: 278 CGSVNYSDKVFNRISNP---------------------------------SVVTYTSMIV 304
              +NY+ ++F+ IS P                                   V Y +MI 
Sbjct: 62  SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMIT 121

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +    G  +++LF +M   G KP++ TF  VL
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/567 (34%), Positives = 329/567 (58%), Gaps = 10/567 (1%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L+    VH+  +++G  SN    N L++ Y +    +     F+ M E +++S+T+++A
Sbjct: 364 NLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIA 423

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY        A+ LF+K+    +  +     +V++ACS L      ++IH ++    F+ 
Sbjct: 424 GYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV----FKR 479

Query: 162 NL---VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           +L   ++ +++V++YG+   +D ARR F+ +  +++VSWTS+I     N    EALE+F 
Sbjct: 480 DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
               Q+  +P+   + S ++A A+L  L  GK  HG ++R G      +AS+LVDMYA C
Sbjct: 540 SLK-QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC 598

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G+V  S K+F+ +    ++ +TSMI     +G G  ++ LF +M  + + P+ +TF+ +L
Sbjct: 599 GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALL 658

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
           +ACSHSGL+ EG +  + M   Y + P  +HY C+VD+L R+  L+EAY   +++ + P 
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPS 718

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +W  LL A  +H   ++   A+ +L++S+ + +  Y  +SN +A  G W +V  +R
Sbjct: 719 SE--IWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVR 776

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MK  G+ K PGCSW+E+ ++ + F A +    +  ++   L +  + ++++G    +T
Sbjct: 777 LRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQT 836

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             VF +V +E + +++  HSERLAL +GL+  PKG  IRI KNLR+C DCH  FK+ S++
Sbjct: 837 KFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEV 896

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R  VVRD NRFHHF  G CSCGDFW
Sbjct: 897 SQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 235/471 (49%), Gaps = 19/471 (4%)

Query: 13  LAASSLTRQNKRSSCHTKAH-FIQQLQ--ECKHLISLA-SVHSEILKSGFLSNTFTLNHL 68
           L A SL R+ +     +  + F+  LQ  E    + L   +H  +LKS   ++ +  N L
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANAL 289

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
           I  Y +  + + A ++F+ ML  + VS+ +L++G +       AL  F+ M  +   P++
Sbjct: 290 IAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQ 349

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            +   +I A     +L+ GK++H +    G   N+ + ++LVDMY KC  V      F+ 
Sbjct: 350 VSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFEC 409

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  ++++SWT+II  +AQN    EA+ +FR+   +  D  +  M+ SV+ AC+ L     
Sbjct: 410 MHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD-VDPMMIGSVLRACSGLKSRNF 468

Query: 249 GKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            +  HG V +   +  D+ + +A+V++Y + G ++Y+ + F  I +  +V++TSMI    
Sbjct: 469 IREIHGYVFKR--DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCV 526

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
             GL   +L+LF  +    I+P+ +  +  L A ++   + +G +    + RK G   + 
Sbjct: 527 HNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEG 585

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
              + +VDM    G ++ + K+  S++       +LW ++++A+ +HG  + A+    ++
Sbjct: 586 PIASSLVDMYACCGTVENSRKMFHSVK---QRDLILWTSMINANGMHGCGNKAIALFKKM 642

Query: 428 IESNQQVANAYVT-LSNTYALAGEWENVHSLR-SEMKRTGIHKEPGCSWVE 476
             ++Q V   ++T L+  YA +     V   R  E+ + G   EP   W E
Sbjct: 643 --TDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEP---WPE 688



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 191/394 (48%), Gaps = 18/394 (4%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML--EPNVVSYTSLMAGYI 104
           A +H   +K G+    F  N LI  Y +      AR LFD ++  + + VS+ S+++ ++
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
             G    AL LF++M    V  N +TF   ++     + +  G  IH  +       ++ 
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVY 284

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+ MY KC  ++ A RVF+ M CR+ VSW +++    QN    +AL  FR+    S
Sbjct: 285 VANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQ-NS 343

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             +P+Q  + ++I A    G L+ GK  H   +R+G + N  + + LVDMYAKC  V Y 
Sbjct: 344 GQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYM 403

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              F  +    ++++T++I G A+      +++LF ++  +G+  + +    VL ACS  
Sbjct: 404 GHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-- 461

Query: 345 GLVDEGIQHLDSMYRKYGII-----PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
                G++  + +   +G +      D      +V++ G  G +D A +  +SI+     
Sbjct: 462 -----GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIR---SK 513

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
             + W ++++    +G    A+E    L ++N Q
Sbjct: 514 DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 159/305 (52%), Gaps = 7/305 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ +LKS    + F    L+  Y +    + A ++FDEM E  + S+ +LM  +++ G+
Sbjct: 68  LHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGK 125

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ L++ M    V  +  TF +V+KAC  L +   G +IH      G+   + VC++
Sbjct: 126 YLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNA 185

Query: 169 LVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           L+ MYGKC D+ GAR +FD  +M   + VSW SII AH       EAL +FR    +   
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQ-EVGV 244

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
             N +   + +        +  G   HG V++S   F DV VA+AL+ MYAKCG +  + 
Sbjct: 245 ASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSN-HFADVYVANALIAMYAKCGRMEDAG 303

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF  +     V++ +++ G  +  L   +L+ F +M + G KP+ V+ + ++ A   SG
Sbjct: 304 RVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSG 363

Query: 346 LVDEG 350
            + +G
Sbjct: 364 NLLKG 368


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 314/562 (55%), Gaps = 46/562 (8%)

Query: 47  ASVHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVA--RQLFDEMLEPNVVSYTSLMAGY 103
           AS+H+  L+SGF + + F    L+  Y +    ++A  R  FDE    +V     ++A Y
Sbjct: 67  ASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAY 126

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +  G+   A  +F  M G                                        +L
Sbjct: 127 VARGEVAEARKVFDGMSGR---------------------------------------DL 147

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           V  ++++  Y    DV  AR +FD    R+  SW+S+I A+A+     EALE++RE    
Sbjct: 148 VSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVA 207

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+   + SV++AC+++G L  G   H  V  +  E +  + +ALVDMYAKCG +  
Sbjct: 208 GVA-PDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIEN 266

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           S KVF+ +    V+T++SMI+G A +GLG  +L LF+EMIS+G++PN++TF+GVL AC+H
Sbjct: 267 SLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTH 326

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            GLV++G ++  SM   +G++P  +HY C+VD+LGR G ++EA +L +S+   PD  P++
Sbjct: 327 VGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPD--PII 384

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W TLL A R+H  V+IA EA  +L   +      YV LSN YA A  WE V  +R  ++R
Sbjct: 385 WRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRR 444

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             I + PG S +E  +  + F +G+    R  E+  +L E+  ++++ GY    T LV  
Sbjct: 445 ENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGY-RPMTSLVLQ 503

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+++++++  +  HSE+LA+AFGL+  P   T+RI KNLR C DCH   KLIS   +R  
Sbjct: 504 DIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKL 563

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           +VRD NRFHHF  G CSC D+W
Sbjct: 564 IVRDRNRFHHFSEGQCSCKDYW 585


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 340/634 (53%), Gaps = 81/634 (12%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---------ARQLFDE------------ 87
           +H E+ K G LS    LN L++CYV    + +         AR+LFDE            
Sbjct: 153 LHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWT 212

Query: 88  ---------------------MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
                                M +   V++ ++++GY++ G  + A  L ++M    +  
Sbjct: 213 TIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQL 272

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQ----YNLVVCSSLVDMYGKCNDVDGA 182
           +E+T+ +VI A S       G+Q+H ++     Q    + L V ++L+ +Y +C  +  A
Sbjct: 273 DEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEA 332

Query: 183 RRVFDLM-------------GC------------------RNVVSWTSIIVAHAQNAQGH 211
           RRVFD M             GC                  R++++WT +I   AQN  G 
Sbjct: 333 RRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGE 392

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           E L++F +   +  + P  +  A  I +C+ LG L +G+  H  +++ G + +  V +AL
Sbjct: 393 EGLKLFNQMKLEGLE-PCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNAL 451

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + MY++CG V  +D VF  +     V++ +MI   A++G G  ++ L+ +M+   I P+ 
Sbjct: 452 ITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDR 511

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           +TF+ +L ACSH+GLV EG  + D+M   YGI P+  HY+ ++D+L R G   EA  + +
Sbjct: 512 ITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTE 571

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
           S+  +P G P +W  LL+   +HG +++ ++A+++L+E   Q    Y++LSN YA  G+W
Sbjct: 572 SMPFEP-GAP-IWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQW 629

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           + V  +R  M+  G+ KEPGCSW+E+ +  + F   +A+      V   L +L  +M++ 
Sbjct: 630 DEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKL 689

Query: 512 GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
           GYV   T  V  D+E E +E  +  HSE+LA+ +G++ +P G TIR+ KNLR+C DCH+ 
Sbjct: 690 GYV-PDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNA 748

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           FK IS +V+R+ +VRD  RFHHFRNG CSC ++W
Sbjct: 749 FKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/507 (23%), Positives = 212/507 (41%), Gaps = 118/507 (23%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L +  H     +VH+ IL SGF      +N LI+ Y +      AR LFD++ +P++V+ 
Sbjct: 6   LAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAA 65

Query: 97  TSLMAGYINMGQPQIALLLFQ-----------------------------------KMLG 121
           T++++ Y   G  ++A  LF                                    K LG
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG 125

Query: 122 NLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCSSLVDMYGKCND-- 178
            +  P+ FTF++V+ A S++AD  T  +Q+H  +  +G      V ++L+  Y  C    
Sbjct: 126 FV--PDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSP 183

Query: 179 -------VDGARRVFD--LMGCRNVVSWTSIIVAHAQN---AQGHEALE----------- 215
                  +  AR++FD    G R+  +WT+II  + +N       E LE           
Sbjct: 184 LVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWN 243

Query: 216 ------MFREFNYQSRD----------RPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
                 + R F  ++ D          + +++   SVI+A ++ G    G+  H  V+R+
Sbjct: 244 AMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT 303

Query: 260 GCE----FNDVVASALVDMYAKCGSVNYSDKVFNRISNP--------------------- 294
             +    F   V +AL+ +Y +CG +  + +VF+++                        
Sbjct: 304 VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEA 363

Query: 295 ----------SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
                     S++T+T MI G A+ G G   L LFN+M   G++P D  + G + +CS  
Sbjct: 364 NSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVL 423

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G +D G Q L S   + G          ++ M  R G ++ A  +  ++   P    + W
Sbjct: 424 GSLDNG-QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTM---PYVDSVSW 479

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESN 431
             +++A   HG    A++   ++++ +
Sbjct: 480 NAMIAALAQHGHGVQAIQLYEKMLKED 506


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 334/572 (58%), Gaps = 14/572 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L +L     +H  +LK GF  + F L+ L++ Y +  + ++ R++FD M + +V
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDV 180

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ SL+ GY   G+ ++AL +F++M       + F++  +I   S    L   + +   
Sbjct: 181 VSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDR 236

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +       N V  +++++ Y K  D + A+ +FD M  R++V+W S+I  + +N Q  +A
Sbjct: 237 MPI----RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++F E   +    PN   +   ++A + +  L +G+  H  +V+SG + + V+ + L++
Sbjct: 293 LKLF-EVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KCGSV  + +VF  I    +  +TS+IVG   +GL   +L+LF+EM   G+KP+ +T
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAIT 411

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+GVL+ACSH+G  ++  ++   M   YGI P  +HY C++D+L R G L+EA    + +
Sbjct: 412 FIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERM 471

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            +  +   ++W +LLS SR HG + +   A+  LI+        YV LSN YA AG WE 
Sbjct: 472 PIKAN--KVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEK 529

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V  +R  MK+ G+ K+PGCS +E +   + F  G+    +  E+   L E+++K+   G+
Sbjct: 530 VRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGH 589

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           +   T ++    ED  +E  +  HSERLA+AFGL++I  G  IRI+KNLR+C DCH V K
Sbjct: 590 IPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTK 649

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L+S I  R+ ++RD +RFHHF++GSCSC DFW
Sbjct: 650 LLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 215/429 (50%), Gaps = 23/429 (5%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV--RLKKTQVARQLFDEML 89
           HF   LQ C        +H+  +K+  L++    + L+  Y   R+   Q A  LFD + 
Sbjct: 19  HF--PLQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQ 76

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           EP +VS+  L+  YI   +   A+ LF K+L + V P+ FT   V+K C+ L  L  GKQ
Sbjct: 77  EPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQ 135

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  +   GF  +  V SSLV MY KC +++  R+VFD M  ++VVSW S+I  +A+  +
Sbjct: 136 IHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGE 195

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK-VAHGVVVRSGCEFNDVVA 268
              ALEMF E     +D  +  +L   I+  +  G+L + + V   + +R     N V  
Sbjct: 196 IELALEMFEEM--PEKDSFSWTIL---IDGLSKSGKLEAARDVFDRMPIR-----NSVSW 245

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +A+++ Y K G  N + ++F+++   S+VT+ SMI G  +      +L LF  M+   I 
Sbjct: 246 NAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDIS 305

Query: 329 PNDVTFVGVLHACSHSGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           PN  T +G + A   SG+V  G  + + S   K G   D    T +++M  + G +  A 
Sbjct: 306 PNYTTILGAVSAA--SGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSAL 363

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYA 446
           ++ +SI     G    W +++    +HG V+  +E  +++  +  +  A  ++ + N  +
Sbjct: 364 RVFRSIPKKKLGH---WTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACS 420

Query: 447 LAGEWENVH 455
            AG  E+ H
Sbjct: 421 HAGFAEDAH 429


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 329/567 (58%), Gaps = 10/567 (1%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L++   VH+  +++G  SN    N LI+ Y +    +     F+ M E +++S+T+++A
Sbjct: 364 NLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIA 423

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY        A+ LF+K+    +  +     +V++ACS L      ++IH ++    F+ 
Sbjct: 424 GYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV----FKR 479

Query: 162 NL---VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           +L   ++ +++V++YG+    D ARR F+ +  +++VSWTS+I     N    EALE+F 
Sbjct: 480 DLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
               Q+  +P+   + S ++A A+L  L  GK  HG ++R G      +AS+LVDMYA C
Sbjct: 540 SLK-QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC 598

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G+V  S K+F+ +    ++ +TSMI     +G G  ++ LF +M    + P+ +TF+ +L
Sbjct: 599 GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALL 658

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
           +ACSHSGL+ EG +  + M   Y + P  +HY C+VD+L R+  L+EAY+  +S+ + P 
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPS 718

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +W  LL A  +H   ++   A+ +L++S+ + +  Y  +SN +A  G W +V  +R
Sbjct: 719 SE--VWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVR 776

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MK  G+ K PGCSW+E+ ++ + F A +    +  ++   L +  + + ++G    +T
Sbjct: 777 LRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQT 836

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             VF +V +E + +++  HSERLAL +GL+  PKG +IRI KNLR+C DCH  FK+ S++
Sbjct: 837 KFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEV 896

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R  VVRD NRFHHF  G CSCGDFW
Sbjct: 897 SQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 230/470 (48%), Gaps = 17/470 (3%)

Query: 13  LAASSLTRQNKRSSCHTKAH-FIQQLQ--ECKHLISLA-SVHSEILKSGFLSNTFTLNHL 68
           L A SL R+ +     +  + F+  LQ  E    + L   +H   LKS   ++ +  N L
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANAL 289

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
           I  Y +  + + A ++F  ML  + VS+ +L++G +     + AL  F+ M  +   P++
Sbjct: 290 IAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQ 349

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
            +   +I A     +L+ GK++H +    G   N+ + ++L+DMY KC  V      F+ 
Sbjct: 350 VSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFEC 409

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  ++++SWT+II  +AQN    EA+ +FR+   +  D  +  M+ SV+ AC+ L     
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD-VDPMMIGSVLRACSGLKSRNF 468

Query: 249 GKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            +  HG V +   +  D+ + +A+V++Y + G  +Y+ + F  I +  +V++TSMI    
Sbjct: 469 IREIHGYVFKR--DLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCV 526

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
             GL   +L+LF  +    I+P+ +  +  L A ++   + +G +    + RK G   + 
Sbjct: 527 HNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEG 585

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
              + +VDM    G ++ + K+  S++       +LW ++++A+ +HG  + A+    ++
Sbjct: 586 PIASSLVDMYACCGTVENSRKMFHSVK---QRDLILWTSMINANGMHGCGNEAIALFKKM 642

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLR-SEMKRTGIHKEPGCSWVE 476
            + N  + +    L+  YA +     V   R  E+ + G   EP   W E
Sbjct: 643 TDEN-VIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEP---WPE 688



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 159/300 (53%), Gaps = 7/300 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ +LKS    + F    L++ Y +    + A ++FDEM E  + ++ ++M  +++ G+
Sbjct: 68  LHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGK 125

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ L+++M    V  +  TF +V+KAC  L +   G +IH      GF   + VC++
Sbjct: 126 YLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNA 185

Query: 169 LVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           L+ MYGKC D+ GAR +FD  +M   + VSW SII AH    +  EAL +FR    +   
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQ-EVGV 244

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
             N +   + +        +  G   HG  ++S   F DV VA+AL+ MYAKCG +  ++
Sbjct: 245 ASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSN-HFADVYVANALIAMYAKCGRMEDAE 303

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF  +     V++ +++ G  +  L R +L+ F +M +   KP+ V+ + ++ A   SG
Sbjct: 304 RVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSG 363



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 190/394 (48%), Gaps = 18/394 (4%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML--EPNVVSYTSLMAGYI 104
           A +H   +K GF    F  N LI  Y +      AR LFD ++  + + VS+ S+++ ++
Sbjct: 165 AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
             G+   AL LF++M    V  N +TF   ++     + +  G  IH          ++ 
Sbjct: 225 TEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVY 284

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++L+ MY KC  ++ A RVF  M CR+ VSW +++    QN    +AL  FR+    S
Sbjct: 285 VANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQ-NS 343

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             +P+Q  + ++I A    G L++GK  H   +R+G + N  + + L+DMYAKC  V + 
Sbjct: 344 AQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHM 403

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
              F  +    ++++T++I G A+      +++LF ++  +G+  + +    VL ACS  
Sbjct: 404 GYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-- 461

Query: 345 GLVDEGIQHLDSMYRKYGII-----PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
                G++  + +   +G +      D      +V++ G  G  D A +  +SI+     
Sbjct: 462 -----GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIR---SK 513

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
             + W ++++    +G    A+E    L ++N Q
Sbjct: 514 DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/495 (37%), Positives = 303/495 (61%), Gaps = 6/495 (1%)

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
           L  +  ML N V P++ +F+ ++++C++  +   G+  H  I   GF+Y++++ + L+D 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 173 YGKCNDVDGARRVFDLMGCRNV--VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           Y K   V+ AR +FD M  RN   V+W ++I A+ Q  +   A+ MF++   ++  +P +
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV-KPTE 133

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
             + S+++ACA LG L  G+  HG +     + + V+ +AL+DMY KCG++  +  VF+ 
Sbjct: 134 VTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHG 193

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +S  ++  + S+IVG    G G  ++  F  M   GIKP+ VTFVG+L  CSHSGL+  G
Sbjct: 194 LSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAG 253

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            ++   M   YG+ P  +HY C+VD+LGR G L EA +L +++ + P+   ++ G+LL A
Sbjct: 254 QRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPN--SMVLGSLLRA 311

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470
            ++H    +  + + QL+E +      YV LSN YA    W++V++ R  M + G+HK P
Sbjct: 312 CQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTP 371

Query: 471 GCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAR 530
           GCS +E+ +  + F AG+    + +++ + L E+ +++K +G+V   T  V  D+E+E +
Sbjct: 372 GCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHV-PNTANVLHDIEEEEK 430

Query: 531 EEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNR 590
           E  +  HSER+A+AFGL+S P G TIR++KNLR C DCH   KLIS+  +R+ +VRD  R
Sbjct: 431 EGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKR 490

Query: 591 FHHFRNGSCSCGDFW 605
           FHHFRNGSCSC D+W
Sbjct: 491 FHHFRNGSCSCNDYW 505



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 37/233 (15%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNH 67
           F  A S   +    +   T+   +  L  C HL +L     +H  I       +    N 
Sbjct: 114 FGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNA 173

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LI+ Y +    + A  +F  +   N+  + S++ G    G+ + A+  F  M    + P+
Sbjct: 174 LIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPD 233

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
             TF  ++  CS           H+ + + G +Y     S ++ +YG    V+    + D
Sbjct: 234 GVTFVGILSGCS-----------HSGLLSAGQRY----FSEMLGVYGLEPGVEHYGCMVD 278

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
           L+G    +                EALE+ R        +PN  +L S++ AC
Sbjct: 279 LLGRAGYLK---------------EALELIRAMPM----KPNSMVLGSLLRAC 312


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/544 (35%), Positives = 319/544 (58%), Gaps = 6/544 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F  + L++ Y +  K + A  +F  +LE +VV +T+L+ GY   G    AL +F+ M+  
Sbjct: 138 FVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNR 197

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V PNE+T A ++  C  L DL+ G+ IH  +   G +  +   +SL+ MY +CN ++ +
Sbjct: 198 GVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDS 257

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
            +VF+ +   N V+WTS +V   QN +   A+ +FRE   +    PN   L+S++ AC+S
Sbjct: 258 IKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREM-IRCSISPNPFTLSSILQACSS 316

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           L  L  G+  H + ++ G + N    +AL+++Y KCG+++ +  VF+ ++   VV   SM
Sbjct: 317 LAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSM 376

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I   A+ G G  +L+LF  + + G+ PN VTF+ +L AC+++GLV+EG Q   S+   + 
Sbjct: 377 IYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHN 436

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           I     H+TC++D+LGR+ RL+EA  L + ++ +PD   +LW TLL++ ++HG V++A +
Sbjct: 437 IELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPD--VVLWRTLLNSCKIHGEVEMAEK 493

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTY 482
             ++++E        ++ L+N YA AG+W  V  ++S ++   + K P  SWV++  + +
Sbjct: 494 VMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVH 553

Query: 483 AFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
            F AG+    R  E+  +L  L +K+K  GY    T  V  D+++E +   +  HSE+LA
Sbjct: 554 TFMAGDLSHPRSLEIFEMLHGLMKKVKTLGY-NPNTRFVLQDLDEEKKISSLYYHSEKLA 612

Query: 543 LAFGLI-SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           +A+ L  +I +  TIRI KNLR+C DCH   K +S +  RD + RD  RFHHF+ G CSC
Sbjct: 613 IAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSC 672

Query: 602 GDFW 605
            D+W
Sbjct: 673 KDYW 676



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 209/357 (58%), Gaps = 8/357 (2%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            I Q    K L +L +VH+ ++KSGF S +F  + LI+ Y++      AR+LFDE+   +
Sbjct: 7   LIAQSAHTKSLTTLRAVHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARKLFDELPSRH 65

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V++ S+++ +I+ G+ + A+  +  ML   V P+ +TF+ + KA S L  +  G++ H 
Sbjct: 66  IVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHG 125

Query: 153 HIETFGFQ-YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
                G +  +  V S+LVDMY K + +  A  VF  +  ++VV +T++IV +AQ+    
Sbjct: 126 LAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDG 185

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS-- 269
           EAL++F +   +   +PN++ LA ++  C +LG LV+G++ HG+VV+SG E   VVAS  
Sbjct: 186 EALKIFEDMVNRGV-KPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLE--SVVASQT 242

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+ MY++C  +  S KVFN++   + VT+TS +VG  + G    ++ +F EMI   I P
Sbjct: 243 SLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISP 302

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           N  T   +L ACS   +++ G + + ++  K G+  +      ++++ G+ G +D+A
Sbjct: 303 NPFTLSSILQACSSLAMLEVG-EQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKA 358



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 192/380 (50%), Gaps = 19/380 (5%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           ++++I   +    L T + +HT++   GF Y+  +   L+D Y KC  +  AR++FD + 
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSF-LGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            R++V+W S+I +H  + +  EA+E +     +    P+ +  +++  A + LG +  G+
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGV-LPDAYTFSAISKAFSQLGLIRHGQ 121

Query: 251 VAHGVVVRSGCEFND-VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
            AHG+ V  G E  D  VASALVDMYAK   +  +  VF R+    VV +T++IVG A++
Sbjct: 122 RAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQH 181

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           GL   +L +F +M++RG+KPN+ T   +L  C + G +  G Q +  +  K G+      
Sbjct: 182 GLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNG-QLIHGLVVKSGLESVVAS 240

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL-- 427
            T ++ M  R   ++++ K+   +        + W + +     +GR ++AV    ++  
Sbjct: 241 QTSLLTMYSRCNMIEDSIKVFNQLDY---ANQVTWTSFVVGLVQNGREEVAVSIFREMIR 297

Query: 428 --IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
             I  N    ++ +   ++ A+    E +H++  ++   G +K  G + + +  +     
Sbjct: 298 CSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDG-NKYAGAALINLYGK----- 351

Query: 486 AGNALFERGSEVLSLLRELE 505
            GN   ++   V  +L EL+
Sbjct: 352 CGN--MDKARSVFDVLTELD 369



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 2/256 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++KSG  S   +   L+  Y R    + + ++F+++   N V++TS + G +  G+
Sbjct: 225 IHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGR 284

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            ++A+ +F++M+   + PN FT +++++ACS LA L  G+QIH      G   N    ++
Sbjct: 285 EEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAA 344

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+++YGKC ++D AR VFD++   +VV+  S+I A+AQN  GHEALE+F          P
Sbjct: 345 LINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGL-VP 403

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           N     S++ AC + G +  G ++   +      E      + ++D+  +   +  +  +
Sbjct: 404 NGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAML 463

Query: 288 FNRISNPSVVTYTSMI 303
              + NP VV + +++
Sbjct: 464 IEEVRNPDVVLWRTLL 479


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/609 (34%), Positives = 333/609 (54%), Gaps = 46/609 (7%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV--RLKKTQVARQLFDEMLEPNVV 94
           L+ CK +  +   H+ ++ +G + +  T N L+   +         A QLFD++ +P+V 
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVF 81

Query: 95  SYTSLMAGY-INMGQPQIALLLFQKML---GNLVWPNEFTFATVIKACSMLADLITGKQI 150
            Y +++  + +       ++ +F  M+   G L  PN +TF  V KAC     ++ G+QI
Sbjct: 82  IYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFL--PNRYTFVFVFKACGNGLGVLEGEQI 139

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL---------------------- 188
             H    G + NL V ++++ MY     VD ARRVFD                       
Sbjct: 140 RVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEI 199

Query: 189 ---------MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
                    M  R+VVSWT+II  + Q     EAL++F E   Q+   PN+  LAS + A
Sbjct: 200 GRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM-LQTGPPPNEFTLASALAA 258

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVV 297
           CA+L  L  G+  H  + +S  + N+ + ++L+DMYAKCG ++++ KVF+        V 
Sbjct: 259 CANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVW 318

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            + +MI G A +G  + ++DLF +M    + PN VTFV +L+ACSH  LV+EG  +  SM
Sbjct: 319 PWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSM 378

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
              YGI P+ +HY C+VD+LGR+G L EA +   ++ + PD    +WG LL A R+H  +
Sbjct: 379 ASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDA--TIWGALLGACRIHKDI 436

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           +        + E +      +V L+N Y+ +G+W+   ++R +++ +G  K PGCS +E+
Sbjct: 437 ERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIEL 496

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA-REEIVGL 536
               + F  G+    +  ++   L E+  K+K  GYV  + G V +D++DE  +E  +  
Sbjct: 497 NGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVP-EFGEVLLDIDDEEDKETALSK 555

Query: 537 HSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRN 596
           HSE+LA+AFGLI+ P G  IRI+KNLR+C DCH+  K IS + +R+ +VRD  R+HHF++
Sbjct: 556 HSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKD 615

Query: 597 GSCSCGDFW 605
           G CSC D+W
Sbjct: 616 GFCSCKDYW 624



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 18/251 (7%)

Query: 222 YQSRDRP---NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY--A 276
           Y +  +P   NQ  L S + +C S+ ++   K  H  ++ +G   + + A+ L+ +   +
Sbjct: 5   YSTFKKPLNSNQLQLFS-LESCKSMNQI---KQTHAHLITTGLILHPITANKLLKVLIAS 60

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF-SLDLFNEMIS-RGIKPNDVTF 334
             GS++Y+ ++F++I  P V  Y +MI   A        S+ +F  M+   G  PN  TF
Sbjct: 61  SFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTF 120

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           V V  AC +   V EG + +     K G+  +      ++ M    G +DEA ++     
Sbjct: 121 VFVFKACGNGLGVLEG-EQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRV---FD 176

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
              D     W  ++      G +  A E  +++ E +     ++ T+   Y   G ++  
Sbjct: 177 WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERD---VVSWTTIIAGYVQVGCFKEA 233

Query: 455 HSLRSEMKRTG 465
             L  EM +TG
Sbjct: 234 LDLFHEMLQTG 244


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/627 (34%), Positives = 337/627 (53%), Gaps = 55/627 (8%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI----NCYVRLKKTQVARQLFD 86
           +    Q+  C+ +  L+ +H+  +KSG + +T     ++       +  +    A ++F+
Sbjct: 17  SSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFN 76

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQ--IALLLFQKMLGN-LVWPNEFTFATVIKACSMLAD 143
           +M + N  S+ +++ G+    + +  IA+ LF +M+ +  + PN FTF +V+KAC+    
Sbjct: 77  QMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGK 136

Query: 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN-------------------------- 177
           +  GKQIH     +GF  +  V S+LV MY  C                           
Sbjct: 137 IQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRK 196

Query: 178 -------------------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
                              D   AR +FD M  R+VVSW ++I  ++QN    +A+E+FR
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           E       RPN   L SV+ A + LG L  G+  H     SG   +DV+ SAL+DMY+KC
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +  +  VF R+   +V+T+++MI G A +G    ++D F +M   G++P+DV ++ +L
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACSH+GLV+EG ++   M    G+ P  +HY C+VD+LGR G LDEA +   ++ + PD
Sbjct: 377 TACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPD 436

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
              ++W  LL A R+H  V++    +N L++     + AYV LSN YA  G W  V  +R
Sbjct: 437 D--VIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 494

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             MK   I K+PGCSW++I    + F   +    R  E+ S+L E+  K++  GY    T
Sbjct: 495 LRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGY-RPIT 553

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V +++E+E +E  +  HSE++A AFGLIS   G  IRI+KNLR+C DCH   KLIS +
Sbjct: 554 TQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKV 613

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R   VRD  RFHHF++GSCSC D+W
Sbjct: 614 YKRKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 319/565 (56%), Gaps = 14/565 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+  L+ G   +    N L++ Y R    + AR LF E +  N VS+ +++AG    GQ
Sbjct: 345 IHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF-EGIPGNAVSWNTMIAGSSQKGQ 403

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD----LITGKQIHTHIETFGFQYNLV 164
            + AL LFQ+M    + P   T+  +++A +   +    +  G+++H+ I + G+     
Sbjct: 404 MKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPA 463

Query: 165 VCSSLVDMYGKCNDVDGARRVFD---LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + +++V MY  C  +D A   F    +    +VVSW +II + +Q+  G  AL  FR  +
Sbjct: 464 IGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMD 523

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                 PNQ    +V++ACA    L  G + H  +  SG E N  VA+AL  MY +CGS+
Sbjct: 524 LHGVA-PNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSL 582

Query: 282 NYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
             + ++F +++    VV + +MI   ++ GL   +L LF  M   G +P++ +FV VL A
Sbjct: 583 ESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSA 642

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSH GL DEG +   SM + YGI P   HY C VD+LGR G L +A +L + + V P   
Sbjct: 643 CSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT-- 700

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            L+W TLL A R +  VD    A++ + E +    +AYV LSN  A AG+W+    +R+E
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M+  G+ K+ G SW+EI+ + + F AG+    R  E+   L  L  +++E GYV   T L
Sbjct: 761 MESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYV-PDTRL 819

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V   V++  +E ++  HSERLA+A G++S     T+R+MKNLR+C DCH+  K IS IV 
Sbjct: 820 VLRKVDEAEKERLLCQHSERLAIALGVMSSSTD-TVRVMKNLRVCEDCHNATKFISKIVN 878

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++ VVRD +RFHHF +GSCSCGD+W
Sbjct: 879 KEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 178/369 (48%), Gaps = 13/369 (3%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L  C  +    ++HS + +SG          L + Y RL     A+++FD   E +VVS+
Sbjct: 235 LSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSW 294

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++  Y   G    A LLF +ML   + P++ T       CS    L  G+ IH     
Sbjct: 295 NAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCS---SLRFGRMIHACALE 351

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G   ++V+ ++L+DMY +C   + AR +F+ +   N VSW ++I   +Q  Q   ALE+
Sbjct: 352 KGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALEL 410

Query: 217 FREFNYQSRDRPNQHMLASVINACAS----LGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           F+    +    P +    +++ A AS       +  G+  H  +V  G      + +A+V
Sbjct: 411 FQRMQLEGMA-PVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVV 469

Query: 273 DMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            MYA CG+++ +   F R +      VV++ ++I   +++G G+ +L  F  M   G+ P
Sbjct: 470 KMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAP 529

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N +T V VL AC+ +  + EG+   D + R  G+  +    T +  M GR G L+ A ++
Sbjct: 530 NQITCVAVLDACAGAAALTEGVIVHDHL-RHSGMESNVFVATALASMYGRCGSLESAREI 588

Query: 390 AKSIQVDPD 398
            + + V+ D
Sbjct: 589 FEKVAVERD 597



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 214/454 (47%), Gaps = 22/454 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I+  G        NHL+  Y++ +      ++F  +   +  S+T+++  Y   GQ
Sbjct: 51  IHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQ 108

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ +F +M    V  +  TF  V+KAC+ L DL  G+ IH  I   G +   V+ + 
Sbjct: 109 AKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANL 168

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +YG C  V  A  +F+ M  R++VSW + I A+AQ+     ALE+F+    +   RP
Sbjct: 169 LLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGV-RP 226

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +  L   ++ CA   ++   +  H +V  SG E   VV++AL   YA+ G ++ + +VF
Sbjct: 227 ARITLVITLSVCA---KIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVF 283

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R +   VV++ +M+   A++G    +  LF  M+  GI P+ VT V     C  S L  
Sbjct: 284 DRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC--SSLRF 341

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
             + H  ++ +  G+  D      ++DM  R G  +EA  L + I     G  + W T++
Sbjct: 342 GRMIHACALEK--GLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP----GNAVSWNTMI 395

Query: 409 SASRLHGRVDIAVEASNQL-IESNQQVANAYVTLSNTYALAGEWENV----HSLRSEMKR 463
           + S   G++  A+E   ++ +E    V   Y+ L    A   E          L S +  
Sbjct: 396 AGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455

Query: 464 TGIHKEP--GCSWVEIRDQTYAFYAGNALFERGS 495
            G   EP  G + V++     A     A F+RG+
Sbjct: 456 CGYASEPAIGTAVVKMYASCGAIDEAAASFQRGA 489



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 196/412 (47%), Gaps = 27/412 (6%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L+ C  L  L+   S+H+ I++SG    +   N L++ Y        A  LF+ M 
Sbjct: 131 FLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM- 189

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E ++VS+ + +A     G   +AL LFQ+M    V P   T    +  C   A +   + 
Sbjct: 190 ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVC---AKIRQARA 246

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH+ +   G +  LVV ++L   Y +   +D A+ VFD    R+VVSW +++ A+AQ+  
Sbjct: 247 IHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA  +F    ++    P++  L +    C+SL R   G++ H   +  G + + V+ +
Sbjct: 307 MSEAALLFARMLHEGIP-PSKVTLVNASTGCSSL-RF--GRMIHACALEKGLDRDIVLGN 362

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+DMY +CGS   +  +F  I   + V++ +MI G+++ G  + +L+LF  M   G+ P
Sbjct: 363 ALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAP 421

Query: 330 NDVTFVGVLHACS----HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
              T++ +L A +     +  + EG + L S     G   +    T VV M    G +DE
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEG-RKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDE 480

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHG----------RVDIAVEASNQL 427
           A    +   ++     + W  ++S+   HG          R+D+   A NQ+
Sbjct: 481 AAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQI 532


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/644 (34%), Positives = 335/644 (52%), Gaps = 69/644 (10%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI--NCYVRLKKTQVARQLF 85
           HT+      L  C+ L +L  VH+ + K+G  ++      L+  +          AR+LF
Sbjct: 3   HTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLF 62

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADL 144
                P+V  + +L+ G      PQ +L+ F +M   L  P + F+FA ++KA +    L
Sbjct: 63  LHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSL 122

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYG------------------------------ 174
            +G Q+H      G   +L V ++LV MY                               
Sbjct: 123 ESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTAC 182

Query: 175 -KCNDVDGARRVFDLMGCRNV-------------------------------VSWTSIIV 202
            +C DV GA  +F+ M  RN+                               VSW+++IV
Sbjct: 183 FRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIV 242

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
             A N   +EA   FRE   Q   RPN+  L   ++ACA  G +  GK+ HG + +SG  
Sbjct: 243 GFAHNGFFYEAFGFFRELQ-QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFL 301

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           +   V +AL+D Y+KCG+V  +  VF R+    S+V++TSMI G A +G G  ++ LF+E
Sbjct: 302 WMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHE 361

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M   GI+P+ + F+ +L+ACSH+GL+++G ++   M   Y I P  +HY C+VD+ GR G
Sbjct: 362 MEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAG 421

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           +LD+AY+    + V P    ++W TLL A  +HG V +A     +L E +   +  +V L
Sbjct: 422 QLDKAYEFIIHMPVLPTA--IIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLL 479

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           SN YA+AG+W++V ++R  M    ++K PG S +E+    Y+F AG        E    L
Sbjct: 480 SNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKL 539

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
           +E+  K++  G    + G V  D+EDE +E+ V  HSE+LA+AFG+  + KG  IRI+KN
Sbjct: 540 KEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKN 599

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+CRDCH V KLIS +   + VVRD +RFH F+ GSCSC D+W
Sbjct: 600 LRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 302/512 (58%), Gaps = 50/512 (9%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P++F F+ ++KAC+ L  +  G+Q+H H     +  + VV SSLVDMY KC  ++ A+ V
Sbjct: 40  PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 99

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR--------------------------- 218
           FD +  +N +SWT+++  +A++ +  EALE+FR                           
Sbjct: 100 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAF 159

Query: 219 ----EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
               E   +  D  +  +L+S++ ACA+L   ++G+  HG              +AL+DM
Sbjct: 160 SVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHG--------------NALIDM 205

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           YAKC  V  +  +F+R+ +  VV++TS+IVG A++G    +L L+++M+S G+KPN+VTF
Sbjct: 206 YAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTF 265

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           VG+++ACSH G V++G +   SM + YGI P  +HYTC++D+LGR+G LDEA  L  ++ 
Sbjct: 266 VGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMP 325

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWEN 453
             PD     W  LLSA +  GR  + +  ++ L+ S + +  + Y+ LSN YA A  W  
Sbjct: 326 FPPDEP--TWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 383

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER-G 512
           V   R ++    + K+PG S VE+R +T  FYAG        ++  LL++LE +M+ R G
Sbjct: 384 VSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNG 443

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T  +  D++++ +E+++  HSER A+A+GL+    G  IRI+KNLR+C DCH V 
Sbjct: 444 YVP-DTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVL 502

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           K IS+I ER+ +VRD  R+HHF+ G CSC DF
Sbjct: 503 KHISEITEREIIVRDATRYHHFKGGKCSCNDF 534



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 75/131 (57%)

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  R+ ++W S++ A  Q     + L +F      S  RP+  + ++++ ACA+LG +  
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G+  H   + S    ++VV S+LVDMYAKCG +N +  VF+ I   + +++T+M+ G AK
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 309 YGLGRFSLDLF 319
            G    +L+LF
Sbjct: 121 SGRKEEALELF 131



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 5/187 (2%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N LI+ Y +      A+ +F  M   +VVS+TSL+ G    GQ + AL L+  M+ + V 
Sbjct: 200 NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVK 259

Query: 126 PNEFTFATVIKACSMLADLITGKQI-HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           PNE TF  +I ACS +  +  G+++  +  + +G + +L   + L+D+ G+   +D A  
Sbjct: 260 PNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 319

Query: 185 VFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREF--NYQSRDRPNQHMLASVINACA 241
           +   M    +  +W +++ A  +  +G   + +      +++ +D P+ ++L S I A A
Sbjct: 320 LIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKD-PSTYILLSNIYASA 378

Query: 242 SLGRLVS 248
           SL   VS
Sbjct: 379 SLWGKVS 385



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           ++P+D  F  ++ AC++ G +D G Q H   +  +Y    D    + +VDM  + G L+ 
Sbjct: 38  LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA--NDEVVKSSLVDMYAKCGLLNS 95

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           A  +  SI+V      + W  ++S     GR + A+E    L   N     ++  L + +
Sbjct: 96  AKAVFDSIRVK---NTISWTAMVSGYAKSGRKEEALELFRILPVKNLY---SWTALISGF 149

Query: 446 ALAGEWENVHSLRSEMKR 463
             +G+     S+ +EM+R
Sbjct: 150 VQSGKGLEAFSVFTEMRR 167


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/577 (35%), Positives = 326/577 (56%), Gaps = 19/577 (3%)

Query: 40  CKHLISLAS----------VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           C HL+S+ S          V+  + K  ++S+    N LIN YVR      AR++FDEM 
Sbjct: 82  CNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSS----NILINGYVRAGDLVNARKVFDEMP 137

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           +  + ++ +++AG I     +  L LF++M G    P+E+T  +V    + L  +  G+Q
Sbjct: 138 DRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQ 197

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH +   +G + +LVV SSL  MY +   +     V   M  RN+V+W ++I+ +AQN  
Sbjct: 198 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 257

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
               L +++     S  RPN+    +V+++C+ L     G+  H   ++ G      V S
Sbjct: 258 PETVLYLYKMMKI-SGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVS 316

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIK 328
           +L+ MY+KCG +  + K F+   +   V ++SMI     +G G  +++LFN M  +  ++
Sbjct: 317 SLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNME 376

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            N+V F+ +L+ACSHSGL D+G++  D M  KYG  P  KHYTCVVD+LGR G LD+A  
Sbjct: 377 INEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEA 436

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           + +S+ +  D   ++W TLLSA  +H   ++A     ++++ +   +  YV L+N +A A
Sbjct: 437 IIRSMPIKTD--IVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 494

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
             W +V  +R  M+   + KE G SW E + + + F  G+    +  E+ S L+EL  +M
Sbjct: 495 KRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K +GY    T  V  D+++E +E  +  HSE+LA+AF L+ +P+G  IRI+KNLR+C DC
Sbjct: 555 KLKGY-KPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDC 613

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H  FK IS I  R+  +RD +RFHHF NG CSCGD+W
Sbjct: 614 HVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 164/362 (45%), Gaps = 37/362 (10%)

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           FQ+   N ++ N   F   I++C+    L +GKQ+H  +   GF  +  +C+ L+ MY K
Sbjct: 33  FQRFRLN-IFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSK 91

Query: 176 CND----------------------VDG---------ARRVFDLMGCRNVVSWTSIIVAH 204
             D                      ++G         AR+VFD M  R + +W ++I   
Sbjct: 92  LGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGL 151

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            Q     E L +FRE +      P+++ L SV +  A L  +  G+  HG  ++ G E +
Sbjct: 152 IQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELD 210

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
            VV S+L  MY + G +   + V   +   ++V + ++I+G A+ G     L L+  M  
Sbjct: 211 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI 270

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G +PN +TFV VL +CS   +  +G Q + +   K G        + ++ M  + G L 
Sbjct: 271 SGCRPNKITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLG 329

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           +A   AK+     D   ++W +++SA   HG+ D A+E  N + E      N    L+  
Sbjct: 330 DA---AKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 386

Query: 445 YA 446
           YA
Sbjct: 387 YA 388


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/678 (31%), Positives = 351/678 (51%), Gaps = 83/678 (12%)

Query: 4   SLTRNLIFTLAASSLTRQNKR---SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           +LT+  +F+ +    +R          H   +  +   E     +   +H     SG   
Sbjct: 90  ALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDM 149

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEM-------------------------------- 88
           + F    L + Y+R  +   AR++FD M                                
Sbjct: 150 DAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEME 209

Query: 89  ---LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
              +EPN+VS+  +++G+   G  + A+++FQKM      P++ T ++V+ +     +L 
Sbjct: 210 KSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLN 269

Query: 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD-------------LMGCR 192
            G+QIH ++   G   +  V S+++DMYGK   V G  ++FD             + G  
Sbjct: 270 MGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLS 329

Query: 193 ----------------------NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
                                 NVVSWTSII   AQN +  EALE+FRE       +PN+
Sbjct: 330 RNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGV-KPNR 388

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFN 289
             + S++ AC ++  L  G+  HG  VR     +DV V SAL+DMYAKCG +  S  VFN
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHL-LDDVHVGSALIDMYAKCGRIKMSQIVFN 447

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +   ++V + S++ G + +G  +  + +F  ++   +KP+ ++F  +L AC   GL DE
Sbjct: 448 MMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDE 507

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G ++ + M  +YGI P  +HY+C+V++LGR G+L EAY L K I  +PD    +WG LL+
Sbjct: 508 GWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDS--CVWGALLN 565

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           + RL   VD+A  A+ +L     +    YV +SN YA  G W  V S+R++M+  G+ K 
Sbjct: 566 SCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKN 625

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV--DVED 527
           PGCSW++++++ Y   A +    +  ++   + E+  +M++ G+   +  L F   DVE+
Sbjct: 626 PGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGH---RPNLDFALQDVEE 682

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           + +E+++  HSE+LA+ FGL++ P G  ++++KNLR+C DCH V K IS    R+  +RD
Sbjct: 683 QEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRD 742

Query: 588 VNRFHHFRNGSCSCGDFW 605
            NRFHHF++G CSCGDFW
Sbjct: 743 TNRFHHFKDGICSCGDFW 760



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 182/438 (41%), Gaps = 77/438 (17%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+ ILKSG  ++ +    LI  Y        A  +   + +P V S++SL+         
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             ++ +F +M  + + P+      + K C+ L+    GKQIH      G   +  V  SL
Sbjct: 98  SQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSL 157

Query: 170 VDMYGKCNDVDGARRVFDLM------------------GC-----------------RNV 194
             MY +C  +  AR+VFD M                  GC                  N+
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNI 217

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           VSW  I+    ++    EA+ MF++ ++     P+Q  ++SV+ +      L  G+  HG
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGF-CPDQVTVSSVLPSVGDSENLNMGRQIHG 276

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---------------------- 292
            V++ G   +  V SA++DMY K G V    K+F+                         
Sbjct: 277 YVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDK 336

Query: 293 -------------NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
                          +VV++TS+I G A+ G    +L+LF EM   G+KPN VT   +L 
Sbjct: 337 ALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLP 396

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPD 398
           AC +   +  G +       +  ++ D    + ++DM  + GR+    K+++ +  + P 
Sbjct: 397 ACGNIAALGHG-RSTHGFAVRVHLLDDVHVGSALIDMYAKCGRI----KMSQIVFNMMPT 451

Query: 399 GGPLLWGTLLSASRLHGR 416
              + W +L++   +HG+
Sbjct: 452 KNLVCWNSLMNGYSMHGK 469



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 22/362 (6%)

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           Q H  I   G Q +  + + L+  Y   N  + A  +   +    V S++S+I A  +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              +++ +F    +     P+ H+L ++   CA L    +GK  H V   SG + +  V 
Sbjct: 96  LFSQSIGVFSRM-FSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
            +L  MY +CG +  + KVF+R+S   VVT ++++ G A+ G     + + +EM   GI+
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT-----GRL 383
           PN V++ G+L   + SG   E +     M+   G  PD    + V+  +G +     GR 
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHH-LGFCPDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
              Y + + +  D      +   +L      G V   ++  ++       V NAY+T  +
Sbjct: 274 IHGYVIKQGLLKD----KCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLS 329

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
              L  +   +  L  E K     +    SW  I        AG A   +  E L L RE
Sbjct: 330 RNGLVDKALEMFGLFKEQKM----ELNVVSWTSI-------IAGCAQNGKDIEALELFRE 378

Query: 504 LE 505
           ++
Sbjct: 379 MQ 380


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 335/605 (55%), Gaps = 37/605 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            ++ L   K L+    +H    K GF S+ F    L+  Y    +   AR +FD+M   +
Sbjct: 128 LLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRD 187

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           VV+++ ++ GY   G    ALLLF++M    V P+E   +TV+ AC    +L  GK IH 
Sbjct: 188 VVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVD-------------------------------G 181
            I       +  + S+LV MY  C  +D                                
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIEN 307

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINAC 240
           AR VF+ M  +++V W+++I  +A++    EAL +F E   QS   +P+Q  + SVI AC
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEM--QSLGIKPDQVTMLSVITAC 365

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           A LG L   K  H  V ++G      + +AL++MYAKCGS+  + ++F+++   +V+++T
Sbjct: 366 AHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWT 425

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
            MI   A +G    +L  F++M    I+PN +TFVGVL+ACSH+GLV+EG +   SM  +
Sbjct: 426 CMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINE 485

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           + I P   HY C+VD+ GR   L EA +L +++ + P+   ++WG+L++A R+HG +++ 
Sbjct: 486 HNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPN--VIIWGSLMAACRVHGEIELG 543

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A+ +L+E +     A+V LSN YA A  WE+V  +R  MK  GI KE GCS  E+ ++
Sbjct: 544 EFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNE 603

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F   +   +   E+   L E+  K+K  GY    T  + VD+E+E ++E+V  HSE+
Sbjct: 604 IHEFLVADRSHKHADEIYEKLYEVVSKLKLVGY-SPNTCSILVDLEEEEKKEVVLWHSEK 662

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LAL +GL+    G  IRI+KNLR+C DCH   KL S + ER+ VVRD  RFHH+++G CS
Sbjct: 663 LALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCS 722

Query: 601 CGDFW 605
           C D+W
Sbjct: 723 CKDYW 727



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 206/437 (47%), Gaps = 39/437 (8%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT-QVARQLFD 86
           H+       L     L  L  VH++IL+S    +T  L  L+     L  +   A  +F+
Sbjct: 21  HSHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFN 80

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            + +P        +       +P+  LL++++M    +  + F+F  ++KA S +  L+ 
Sbjct: 81  LIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE 140

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G +IH      GF  +  V + LV MY  C  +  AR +FD M  R+VV+W+ +I  + Q
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200

Query: 207 NAQGHEALEMFREF-NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           +   ++AL +F E  NY     P++ ML++V++AC   G L  GK+ H  ++ +    + 
Sbjct: 201 SGLFNDALLLFEEMKNYNV--EPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDP 258

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL-------------- 311
            + SALV MYA CGS++ +  +F +++  ++V  T+M+ G +K G               
Sbjct: 259 HLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKK 318

Query: 312 -----------------GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
                             + +L+LFNEM S GIKP+ VT + V+ AC+H G +D+  + +
Sbjct: 319 DLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWI 377

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
                K G          +++M  + G L+ A ++   +   P    + W  ++SA  +H
Sbjct: 378 HLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKM---PRKNVISWTCMISAFAMH 434

Query: 415 GRVDIAVEASNQLIESN 431
           G    A+   +Q+ + N
Sbjct: 435 GDAGSALRFFHQMEDEN 451


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 315/541 (58%), Gaps = 5/541 (0%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N +I+ Y    +   A QLF +M   +V+S++S++AG  + G+ + AL+LF+ M+ + V 
Sbjct: 185 NAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVC 244

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFG-FQYNLVVCSSLVDMYGKCNDVDGARR 184
            +       + A + +     G QIH  +   G + ++  V +SLV  Y  C  ++ A R
Sbjct: 245 LSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACR 304

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VF  +  ++VV WT+++  +  N +  EALE+F E   +    PN+    S +N+C  L 
Sbjct: 305 VFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEM-MRIDVVPNESSFTSALNSCCGLE 363

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            +  GKV H   V+ G E    V  +LV MY+KCG V+ +  VF  I+  +VV++ S+IV
Sbjct: 364 DIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIV 423

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G A++G G ++L LFN+M+  G+ P+ +T  G+L ACSHSG++ +         +K  + 
Sbjct: 424 GCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVT 483

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
              +HYT +VD+LGR G L+EA  +  S+ +  +   ++W  LLSA R H  +D+A  A+
Sbjct: 484 LTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANS--MVWLALLSACRKHSNLDLAKRAA 541

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
           NQ+ E     + AYV LSN YA +  W  V  +R +MK  G+ K+PG SW+ ++ Q + F
Sbjct: 542 NQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKHKF 601

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
            + +       ++   L  L  K+KE GYV  +      DVE E +EE++  HSERLA+A
Sbjct: 602 LSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQ-FALHDVETEQKEEMLSYHSERLAIA 660

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGL+S  +G  I +MKNLR+C DCH+  KL++ IV+R+ VVRD +RFH F+NG CSCGD+
Sbjct: 661 FGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKNGICSCGDY 720

Query: 605 W 605
           W
Sbjct: 721 W 721



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 2/199 (1%)

Query: 49  VHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H  + K G +  + F    L+  Y   K+ + A ++F E++  +VV +T+L+ GY    
Sbjct: 269 IHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLND 328

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + AL +F +M+   V PNE +F + + +C  L D+  GK IH      G +    V  
Sbjct: 329 KHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGG 388

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SLV MY KC  V  A  VF  +  +NVVSW S+IV  AQ+  G  AL +F +   +  D 
Sbjct: 389 SLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVD- 447

Query: 228 PNQHMLASVINACASLGRL 246
           P+   +  +++AC+  G L
Sbjct: 448 PDGITVTGLLSACSHSGML 466



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 158/342 (46%), Gaps = 67/342 (19%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR +FD++  P+V  YT ++  Y    + + A+ LF++    + + +  ++ ++IK C  
Sbjct: 74  ARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRR----IPFKDVVSWNSIIKGCLH 129

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVD----------------------------- 171
             D++T +++   +     +  +V  ++LVD                             
Sbjct: 130 CGDIVTARKLFDEMP----RRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWN 185

Query: 172 --MYGKCND--VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
             ++G C++  VD A ++F  M  R+V+SW+S+I     N +  +AL +FR+    S   
Sbjct: 186 AMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDM-VASGVC 244

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAKCGSVNYSDK 286
            +  +L   ++A A +     G   H  V + G   F++ V+++LV  YA C  +  + +
Sbjct: 245 LSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACR 304

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLG---RFSLDLFNEMISRGIKPNDVTFVGVLHACS- 342
           VF  +   SVV +T+++ G   YGL    R +L++F EM+   + PN+ +F   L++C  
Sbjct: 305 VFGEVVYKSVVIWTALLTG---YGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCG 361

Query: 343 ----------HSGLVDEGIQ-------HLDSMYRKYGIIPDA 367
                     H+  V  G++        L  MY K G + DA
Sbjct: 362 LEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDA 403



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 34/203 (16%)

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +D AR +FD +   +V  +T ++ A+AQN +  EA+++FR   ++     N     S+I 
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWN-----SIIK 125

Query: 239 ACASLG---------------------RLVSGKVAHGVVVRSGCEF-------NDVVA-S 269
            C   G                      LV G +  G+V  +   F        DV A +
Sbjct: 126 GCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWN 185

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           A++  Y   G V+ + ++F ++ +  V++++SMI G    G    +L LF +M++ G+  
Sbjct: 186 AMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCL 245

Query: 330 NDVTFVGVLHACSHSGLVDEGIQ 352
           +    V  L A +       GIQ
Sbjct: 246 SSGVLVCGLSAAAKIPAWRVGIQ 268



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
           S++ +  +F++I  P V  YT M+   A+    R ++DLF  +  + +    V++  ++ 
Sbjct: 70  SLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDV----VSWNSIIK 125

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD 398
            C H G +    +  D M R+  +      +T +VD L R G + EA  L  +++ +D D
Sbjct: 126 GCLHCGDIVTARKLFDEMPRRTVV-----SWTTLVDGLLRLGIVQEAETLFWAMEPMDRD 180

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                W  ++     +GRVD A++   Q+
Sbjct: 181 VAA--WNAMIHGYCSNGRVDDALQLFCQM 207


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/568 (35%), Positives = 320/568 (56%), Gaps = 17/568 (2%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  VH+ ++ + +  +   L  LI      +       LF  +  P+   + S++     
Sbjct: 25  LQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSK 84

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           +  P   +  +++ML + V P+ +TF +VIK+C+ L+ L  GK +H H    GF  +  V
Sbjct: 85  LRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYV 144

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LV  Y KC D++ AR+VFD M  ++VV+W S++    QN    +A+ +F    YQ R
Sbjct: 145 QAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVF----YQMR 200

Query: 226 D---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +    P+     S+++ACA  G +  G   H  +V  G + N  + +AL+++Y++CG V 
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVG 260

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHAC 341
            + +VF+++   +V  +T+MI     +G G+ ++DLFN+M    G  PN+VTFV VL AC
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSAC 320

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG-- 399
           +H+GLV++G      M   Y +IP  +H+ C+VDMLGR G LDEAY+  +  Q+D  G  
Sbjct: 321 AHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQ--QLDATGNA 378

Query: 400 -GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
             P LW  +L A ++H   D+ VE + +LI    +    +V LSN YAL+G+ + V  +R
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIR 438

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             M R  + K+ G S +E+ ++TY F  G+   +   E+   L  L  + KE GY    +
Sbjct: 439 DRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGY-APVS 497

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLI-SIPKGITIRIMKNLRMCRDCHDVFKLISD 577
             V   VE+E +E  +  HSE+LA+AFGL+ ++   IT  ++KNLR+C DCH  FK IS 
Sbjct: 498 EEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDSAIT--VVKNLRICEDCHSAFKYISI 555

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  R  +VRD  RFHHF+NGSCSC D+W
Sbjct: 556 VSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 19/295 (6%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   ++ C  L +L     VH   + SGF  +T+    L+  Y +    + ARQ+FD M 
Sbjct: 110 FTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMP 169

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E +VV++ SL++G+   G  + A+ +F +M  +   P+  TF +++ AC+    +  G  
Sbjct: 170 EKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSW 229

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H +I + G   N+ + ++L+++Y +C DV  AR VFD M   NV +WT++I A+  +  
Sbjct: 230 VHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-----GCEFN 264
           G +A+++F +        PN     +V++ACA  G +  G+  +  +  S     G E +
Sbjct: 290 GKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHH 349

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAK----YGLG 312
                 +VDM  + G ++ + +   ++    N +     + ++GA K    Y LG
Sbjct: 350 ----VCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLG 400


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/582 (34%), Positives = 334/582 (57%), Gaps = 13/582 (2%)

Query: 29  TKAHFIQQLQECKHLISLASV---HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T A F   ++ C  L  L  V   H + LKSG  +N   L  L+    + K+   A  LF
Sbjct: 303 THATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLF 362

Query: 86  DEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
             M    +VVS+T++++GY+  G    A+ LF  M    V PN FT++T++     +   
Sbjct: 363 SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT----VQHA 418

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           +   +IH  +    ++ +  V ++L+D + K  ++  A +VF+L+  ++V++W++++  +
Sbjct: 419 VFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGY 478

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC-ASLGRLVSGKVAHGVVVRSGCEF 263
           AQ  +  EA ++F +   +   +PN+    S+INAC A    +  GK  H   ++     
Sbjct: 479 AQAGETEEAAKIFHQLTREGI-KPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNN 537

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
              V+S+LV +YAK G++  + ++F R     +V++ SMI G A++G  + +L++F EM 
Sbjct: 538 ALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQ 597

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            R ++ + +TF+GV+ AC+H+GLV +G  + + M   + I P  +HY+C++D+  R G L
Sbjct: 598 KRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGML 657

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            +A  +   +   P     +W  +L+ASR+H  +++   A+ ++I    Q + AYV LSN
Sbjct: 658 GKAMDIINGMPFPP--AATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSN 715

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA AG W    ++R  M +  + KEPG SW+E++++TY+F AG+        + S L E
Sbjct: 716 IYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSE 775

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           L  ++++ GY    T  VF D+EDE +E I+  HSERLA+AFGLI+    I ++I+KNLR
Sbjct: 776 LNTRLRDVGY-QPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLR 834

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH   KL+S + +R  VVRD NRFHHF+ G CSCGD+W
Sbjct: 835 VCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 200/392 (51%), Gaps = 19/392 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++K GF +     N LI+   +    + AR +FD M   + VS+ S++AG++  GQ
Sbjct: 225 IHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQ 284

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A   F  M      P   TFA+VIK+C+ L +L   + +H      G   N  V ++
Sbjct: 285 DLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTA 344

Query: 169 LVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+    KC ++D A  +F LM G ++VVSWT++I  + QN    +A+ +F     +   +
Sbjct: 345 LMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV-K 403

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN    ++++    ++   V     H  V+++  E +  V +AL+D + K G+++ + KV
Sbjct: 404 PNHFTYSTIL----TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKV 459

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-HSGL 346
           F  I    V+ +++M+ G A+ G    +  +F+++   GIKPN+ TF  +++AC+  +  
Sbjct: 460 FELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTAS 519

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           V++G Q     +  Y I     +  CV    V +  + G ++ A+++ K  Q + D   +
Sbjct: 520 VEQGKQ-----FHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKR-QKERD--LV 571

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
            W +++S    HG+   A+E   ++ + N +V
Sbjct: 572 SWNSMISGYAQHGQAKKALEVFEEMQKRNLEV 603



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 14/382 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY-INMG 107
           VH + +K G + +    N L++ Y +    +  R++FDEM + +VVS+ SL+ GY  N  
Sbjct: 124 VHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRF 183

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             Q+   LF  M      P+ +T +TVI A +    +  G QIH  +   GF+   +VC+
Sbjct: 184 NDQV-WELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCN 242

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ M  K   +  AR VFD M  ++ VSW S+I  H  N Q  EA E F         +
Sbjct: 243 SLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA-K 301

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P     ASVI +CASL  L   +V H   ++SG   N  V +AL+    KC  ++ +  +
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSL 361

Query: 288 FNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           F+ +    SVV++T+MI G  + G    +++LF+ M   G+KPN  T+  +L    H+  
Sbjct: 362 FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHAVF 420

Query: 347 VDE-GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           + E   + + + Y K   +      T ++D   + G + +A K+ + I+       + W 
Sbjct: 421 ISEIHAEVIKTNYEKSSSVG-----TALLDAFVKIGNISDAVKVFELIETK---DVIAWS 472

Query: 406 TLLSASRLHGRVDIAVEASNQL 427
            +L+     G  + A +  +QL
Sbjct: 473 AMLAGYAQAGETEEAAKIFHQL 494



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 8/320 (2%)

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
           +R    + A+QLFD+    ++  +  L+  Y    Q Q AL LF  +  + + P+ +T +
Sbjct: 47  LRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMS 106

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
            V+  C+   +   G+Q+H      G  ++L V +SLVDMY K  +V   RRVFD MG R
Sbjct: 107 CVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDR 166

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           +VVSW S++  ++ N    +  E+F     +   RP+ + +++VI A A+ G +  G   
Sbjct: 167 DVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGY-RPDYYTVSTVIAALANQGAVAIGMQI 225

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H +VV+ G E   +V ++L+ M +K G +  +  VF+ + N   V++ SMI G    G  
Sbjct: 226 HALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQD 285

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACS---HSGLVDEGIQHLDSMYRKYGIIPDAKH 369
             + + FN M   G KP   TF  V+ +C+     GLV   + H  ++  K G+  +   
Sbjct: 286 LEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVR--VLHCKTL--KSGLSTNQNV 341

Query: 370 YTCVVDMLGRTGRLDEAYKL 389
            T ++  L +   +D+A+ L
Sbjct: 342 LTALMVALTKCKEIDDAFSL 361


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 322/559 (57%), Gaps = 7/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++ +G+    +    L+  Y R    + A  + D M E NVVS+T++++GY    +
Sbjct: 57  VHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQNER 116

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG--KQIHTHIETFGFQYNLVVC 166
           P  A  LF  ML     PNEFT A+V+ +C+    +     KQ+H       F+ ++ V 
Sbjct: 117 PAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVG 176

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           SSL+DMY +  ++  ARRVFD++  R+VVS+T+I+  + +     EAL +FR+  Y    
Sbjct: 177 SSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQL-YNEGM 235

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           + NQ   + ++NA + L  +  GK  HG+++R    F   + ++L+DMY+KCG + YS +
Sbjct: 236 QCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRR 295

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   SVV++ +M++G  ++G+    + LF  M  + +KP+ VT + VL   SH GL
Sbjct: 296 VFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSVTLLAVLLGYSHGGL 354

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG+   D + ++   + + +HY CV+D+LGR+G+L++A  L + +   P     +WG+
Sbjct: 355 VDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRA--IWGS 412

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+H  V +    + +L +   + A  YV LSN YA A  W++V  LR  M +  +
Sbjct: 413 LLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDVFRLRKLMLKKTV 472

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEPG SW+ +    + F++      R  ++   + E+   +K  G+V      V  DV+
Sbjct: 473 IKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAGFVP-DLSCVLHDVD 531

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           DE +E ++  HSE+LA+ FGL+S P  +TI++MKNLR+C DCH+  K +S +  R+  +R
Sbjct: 532 DEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGREISLR 591

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFH    G+C+CGD+W
Sbjct: 592 DKNRFHLITEGACTCGDYW 610



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 150/288 (52%), Gaps = 9/288 (3%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           +   I  C     L  G+Q+H  + T G++  L + + LV MY +C  ++ A  V D M 
Sbjct: 38  YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMP 97

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT++I  ++QN +  EA ++F     ++   PN+  LASV+ +C     +   +
Sbjct: 98  ERNVVSWTAMISGYSQNERPAEAWDLF-IMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQ 156

Query: 251 V--AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           +   H   ++   E +  V S+L+DMYA+  ++  + +VF+ +    VV+YT+++ G  +
Sbjct: 157 IKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTR 216

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDA 367
            GL   +L+LF ++ + G++ N VTF  +L+A S    +D G Q H   + R+       
Sbjct: 217 LGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMAL 276

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           ++   ++DM  + G+L  + ++  ++   P+   + W  +L     HG
Sbjct: 277 QN--SLIDMYSKCGKLLYSRRVFDNM---PERSVVSWNAMLMGYGRHG 319



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 106/177 (59%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           H   +  VH+  +K  F  + F  + L++ Y R +  Q AR++FD +   +VVSYT++++
Sbjct: 153 HQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILS 212

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY  +G  + AL LF+++    +  N+ TF+ ++ A S L+ +  GKQ+H  I      +
Sbjct: 213 GYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPF 272

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            + + +SL+DMY KC  +  +RRVFD M  R+VVSW ++++ + ++   +E +++FR
Sbjct: 273 FMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFR 329



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           H   + I  C     L  G+  H  +V +G      +A+ LV MYA+CG++  +  V + 
Sbjct: 36  HDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDG 95

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +VV++T+MI G ++      + DLF  M+  G +PN+ T   VL +C+ S    +G
Sbjct: 96  MPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGS----QG 151

Query: 351 I-QHLDSMYRKYGIIPDAKHY----TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           I QH       + I  + + +    + ++DM  R+  + EA ++   +   P    + + 
Sbjct: 152 IHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDML---PARDVVSYT 208

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQ 433
           T+LS     G  + A+    QL     Q
Sbjct: 209 TILSGYTRLGLDEEALNLFRQLYNEGMQ 236


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 322/567 (56%), Gaps = 4/567 (0%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E   L+SL ++H   L+  F       N  I  Y +      A  +F  M   +V S+ +
Sbjct: 428 EESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNA 487

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++ G+   G P  AL  + +M    + P++F+  +++ AC  L  L  GK+IH  +   G
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNG 547

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            + N  V  SL+ +Y  C+     R  F+ MG +N V W +++  ++QN   +EAL +FR
Sbjct: 548 LEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +      + P++  +AS++ AC+ L  L  GK  H   +++    ++ VA +L+DMYAK 
Sbjct: 608 QMLSDGLE-PDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKS 666

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G + +S ++FNR++   V ++  MI G   +G G  +++LF +M     +P+  TF+GVL
Sbjct: 667 GFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVL 726

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC H+GLV EG+ +L  M   Y + P+ +HY CV+DMLGR GRL+EA      +  +PD
Sbjct: 727 QACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPD 786

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +W +LLS+S  +  +++  + + +L+      A++Y+ LSN YA AG+W+ V  +R
Sbjct: 787 AK--IWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVR 844

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
            +MK   + K+ GCSW+E+R + Y+F AG        E+  +   LE+++ E GY     
Sbjct: 845 QKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYT-PDC 903

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V  ++E+  + +I+  HSE++A+ FG ++  +G T+RI KNLR+CRDCH+  K IS  
Sbjct: 904 SCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKA 963

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R+ V+RD  RFHHF+ G CSCGD+W
Sbjct: 964 AKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 163/306 (53%), Gaps = 3/306 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   +K G + + F  N +I  Y +      A +LFD+M E N++S+ SL+ G+   G
Sbjct: 231 SVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290

Query: 108 QPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
               A   F+ +L  G+ + P+  T  T++  CS   ++  G  IH      G  + L+V
Sbjct: 291 FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMV 350

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C++L+DMY KC  +  A  +F  +  ++VVSW S+I A+++     E  ++ R+   +  
Sbjct: 351 CNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEE 410

Query: 226 -DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               N+  + +++ AC     L+S +  HG  +R   ++ +++ +A +  YAKCGS+ ++
Sbjct: 411 LMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFA 470

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
           + VF  ++  SV ++ ++I G A+ G    +LD + EM   GI P+D + V +L AC   
Sbjct: 471 EHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRL 530

Query: 345 GLVDEG 350
           GL+  G
Sbjct: 531 GLLQYG 536



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 153/289 (52%), Gaps = 7/289 (2%)

Query: 59  LSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
            S  F LN  LI  Y        +R +FD +L  N+  + +L++GY+       A+  F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 118 KMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           +++    + P+ FTF  +IKAC+   D+  GK +H      G   +L V ++++ +YGKC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR--PNQHMLA 234
             +D A  +FD M  +N++SW S+I   ++N    EA   FR    +S D   P+   + 
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL-LESGDGLIPDVATMV 317

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           +++  C+  G +  G V HG+ V+ G     +V +AL+DMY+KCG ++ +  +F +I N 
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK 377

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKPNDVTFVGVLHAC 341
           SVV++ SMI   ++ G    + DL  +M      ++ N+VT + +L AC
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F  + V+ + L+ MY  C     +R VFD +  +N+  W +++  + +N    EA+  F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           E    +  +P+      +I AC     +  GK  HG+ V+ G   +  V +A++ +Y KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVG 336
           G ++ + ++F+++   +++++ S+I G ++ G    +   F  ++    G+ P+  T V 
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L  CS  G VD G+  +  M  K G++ +      ++DM  + G L EA  L + I+  
Sbjct: 319 LLPVCSGEGNVDVGMV-IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-- 375

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
            +   + W +++ A    G V    +   ++    + +    VT+ N      E   + S
Sbjct: 376 -NKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 457 LRS 459
           LR+
Sbjct: 435 LRA 437


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 200/556 (35%), Positives = 318/556 (57%), Gaps = 5/556 (0%)

Query: 43   LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
            L SL  +H   LK  F+ N    N  +  Y +      A+++F  +    V S+ +L+ G
Sbjct: 766  LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 825

Query: 103  YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
            +     P+++L    +M  + + P+ FT  +++ ACS L  L  GK++H  I     + +
Sbjct: 826  HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 885

Query: 163  LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
            L V  S++ +Y  C ++   + +FD M  +++VSW ++I  + QN     AL +FR+   
Sbjct: 886  LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 945

Query: 223  QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
                     M+  V  AC+ L  L  G+ AH   ++   E +  +A +L+DMYAK GS+ 
Sbjct: 946  YGIQLCGISMMP-VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 1004

Query: 283  YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
             S KVFN +   S  ++ +MI+G   +GL + ++ LF EM   G  P+D+TF+GVL AC+
Sbjct: 1005 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 1064

Query: 343  HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK-LAKSIQVDPDGGP 401
            HSGL+ EG+++LD M   +G+ P+ KHY CV+DMLGR G+LD+A + +A+ +  + D G 
Sbjct: 1065 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG- 1123

Query: 402  LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
             +W +LLS+ R+H  +++  + + +L E   +    YV LSN YA  G+WE+V  +R  M
Sbjct: 1124 -IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 1182

Query: 462  KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
                + K+ GCSW+E+  + ++F  G    +   E+ SL   LE K+ + GY      + 
Sbjct: 1183 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 1242

Query: 522  FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
                E+E  E++ G HSE+LAL +GLI   +G TIR+ KNLR+C DCH+  KLIS ++ER
Sbjct: 1243 HDLSEEEKIEQLRG-HSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMER 1301

Query: 582  DFVVRDVNRFHHFRNG 597
            + VVRD  RFHHF+NG
Sbjct: 1302 EIVVRDNKRFHHFKNG 1317



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH  ++K+G + + F  N L++ Y        A QLFD M E N+VS+ S++  + + G
Sbjct: 563 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 622

Query: 108 QPQIALLLFQKML----GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
             + + LL  +M+         P+  T  TV+  C+   ++  GK +H           L
Sbjct: 623 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 682

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           V+ ++L+DMY KC  +  A+ +F +   +NVVSW +++   +     H   ++ R+    
Sbjct: 683 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 742

Query: 224 SRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
             D + ++  + + +  C     L S K  H   ++    +N++VA+A V  YAKCGS++
Sbjct: 743 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 802

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           Y+ +VF+ I + +V ++ ++I G A+    R SLD   +M   G+ P+  T   +L ACS
Sbjct: 803 YAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 862



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 150/306 (49%), Gaps = 7/306 (2%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H  +  S  L N   L   +I  Y        +R +FD +   N+  + ++++ Y    
Sbjct: 461 IHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNE 520

Query: 108 QPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                L  F +M+    + P+ FT+  VIKAC+ ++D+  G  +H  +   G   ++ V 
Sbjct: 521 LYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVG 580

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++LV  YG    V  A ++FD+M  RN+VSW S+I   + N    E+  +  E   ++ D
Sbjct: 581 NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGD 640

Query: 227 ---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
               P+   L +V+  CA    +  GK  HG  V+   +   V+ +AL+DMY+KCG +  
Sbjct: 641 GAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITN 700

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKPNDVTFVGVLHAC 341
           +  +F   +N +VV++ +M+ G +  G    + D+  +M++ G  +K ++VT +  +  C
Sbjct: 701 AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 760

Query: 342 SHSGLV 347
            H   +
Sbjct: 761 FHESFL 766



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 148/338 (43%), Gaps = 20/338 (5%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLV 170
           A LL ++ LG L           ++A     D+  G++IH  +  +   + + V+C+ ++
Sbjct: 434 AFLLVREALGLL-----------LQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRII 482

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
            MY  C   D +R VFD +  +N+  W ++I ++++N    E LE F E    +   P+ 
Sbjct: 483 TMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDH 542

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
                VI ACA +  +  G   HG+VV++G   +  V +ALV  Y   G V  + ++F+ 
Sbjct: 543 FTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDI 602

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR----GIKPNDVTFVGVLHACSHSGL 346
           +   ++V++ SMI   +  G    S  L  EM+         P+  T V VL  C+    
Sbjct: 603 MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 662

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G + +     K  +  +      ++DM  + G +  A  + K   ++ +   + W T
Sbjct: 663 IGLG-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK---MNNNKNVVSWNT 718

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           ++      G      +   Q++   + V    VT+ N 
Sbjct: 719 MVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNA 756


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 300/511 (58%), Gaps = 34/511 (6%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+ F  A++  A + L  L  G+Q+H H     +  + VV SSL+DMY KC   + AR+V
Sbjct: 9   PDHFVLASLASAAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKV 68

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE-------------------------- 219
           FD +G +N V WT+++  +A N    EA+++FR                           
Sbjct: 69  FDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAV 128

Query: 220 --FNYQSRDR---PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
             F    RD     +  +LA+V+   A L  LV G+  HG  +  G   + +V +ALVDM
Sbjct: 129 GLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDM 188

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y+KC  ++ + +VF  I    VV++T+++VG A++G     L L++ M+  G+KPN+VTF
Sbjct: 189 YSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTF 248

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           VG+++ACSH+GLV +G Q  DSM R+YGI P  +HYTC +D+L R+G L EA +L  ++ 
Sbjct: 249 VGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMP 308

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
            +PD     WG LLSA + H    + +  ++ L+E   +  + Y+ LSN YA+  +W++V
Sbjct: 309 YEPDEAS--WGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSV 366

Query: 455 HSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYV 514
             +R  M    I KEPG SW+E   ++  F+AG    + G E+   L EL  +M++RGYV
Sbjct: 367 AKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVPLDIGEEITRFLEELVSEMRKRGYV 426

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
              T  V  D+E+  +E+ + LHSERLA+AFG++  P G  IR++KNLR+C DCH V K 
Sbjct: 427 -PDTSSVMHDLEENEKEQHLFLHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKF 485

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS+I +R  +VRD +RFHHF +G+CSC +FW
Sbjct: 486 ISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 144/283 (50%), Gaps = 6/283 (2%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           ++  S  + N      L++ Y     T  A  LF  M E  + ++T+L++G++  G    
Sbjct: 67  KVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTG 126

Query: 112 ALLLFQKMLGNLVWPNE-FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170
           A+ LF +M  + V  ++ F  ATV+   + LA L+ G+Q+H    T GF  +++V ++LV
Sbjct: 127 AVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALV 186

Query: 171 DMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
           DMY KC+D+  AR VF  +  R+VVSWT+I+V  AQ+ +  E L ++         +PN+
Sbjct: 187 DMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGM-KPNE 245

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
                +I AC+  G +  G+     + R  G +      +  +D+ ++ G ++ ++++  
Sbjct: 246 VTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELIT 305

Query: 290 RIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
            +   P   ++ +++    K+   +  L + + ++   ++P D
Sbjct: 306 TMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLE--LRPKD 346



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 28/189 (14%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RP+  +LAS+ +A A L  L  G+  H   V S    +DVV S+L+DMY KCG    + K
Sbjct: 8   RPDHFVLASLASAAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARK 67

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ I   + V +T+++ G A  G    ++DLF  M  RG+        G + A +++G 
Sbjct: 68  VFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGA 127

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V   ++      R+ G+                  R+D+A+ LA  +     GG      
Sbjct: 128 VGLFVE-----MRRDGV------------------RIDDAFVLATVV-----GGAAELAA 159

Query: 407 LLSASRLHG 415
           L+   +LHG
Sbjct: 160 LVLGRQLHG 168


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 313/598 (52%), Gaps = 50/598 (8%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ- 108
           H++I+  G   N F    ++  Y        A  +FD +  P+ + Y S++  Y   G  
Sbjct: 100 HAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXX 159

Query: 109 -------PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
                     A + F  +LG+      FT   V+K+C+ L+ +  G+ +H      G + 
Sbjct: 160 XXXXXXLEAYARMHFLGLLGD-----NFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEG 214

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCR----------------------------- 192
           +  V +SL+DMY KC  +  AR++FD M  R                             
Sbjct: 215 DFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME 274

Query: 193 --NVVSWTSIIVAHAQNAQGHEALEMFRE-FNYQSRDRPNQHMLASVINACASLGRLVSG 249
             N+VSWT++I  + QN    +AL +F E     S  +PN   + SV+ ACA    L  G
Sbjct: 275 HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 334

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVTYTSMIVGAA 307
           +  H      G   N  V +AL  MYAKC S+  +   F+ I+    +++ + +MI   A
Sbjct: 335 RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 394

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367
            +G G  ++ +F  M+  G++P+ VTF+G+L  CSHSGL+D G+ H + M   + + P  
Sbjct: 395 SHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRV 454

Query: 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +HY CVVD+LGR GRL EA +L    Q+    GP +WG LL+A R H  ++IA  A+ +L
Sbjct: 455 EHYACVVDLLGRAGRLVEAKELIS--QMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAG 487
                  +  YV LSN YA AG WE V  LR+ +K  G+ K PGCSW+EI  +++ F   
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 572

Query: 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547
           +    +  E+   L  L  K+K  GY+   T  V  D+ +E +E  +  HSE+LA+AFGL
Sbjct: 573 DKSHPQAKEIYKFLEALPEKIKMAGYIP-DTSFVLHDISEEEKEYNLTTHSEKLAIAFGL 631

Query: 548 ISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++   G+ +R+ KNLR+C DCH   K IS I ER+ +VRD+NRFH F++GSCSCGD+W
Sbjct: 632 LNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 155/356 (43%), Gaps = 77/356 (21%)

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
           +L Q +L +  +P+  ++A + +  +    +  G+Q H  I   G Q N  + + +V MY
Sbjct: 65  ILLQPILQH--FPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMY 122

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVA---HAQNAQGHEALEMFREFNYQSRDRPNQ 230
               D+D A  VFD +   + + + SII A   H         LE +   ++      N 
Sbjct: 123 ASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDN- 181

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN- 289
             L  V+ +CA L R+  G+  HG  +R G E +  V ++L+DMY KCG +  + K+F+ 
Sbjct: 182 FTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDK 241

Query: 290 ------------------------------RISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
                                         R+ + ++V++T+MI G  + G    +L LF
Sbjct: 242 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 301

Query: 320 NEMISRG--IKPNDVTFVGVLHACSHSGLVDEGIQ----------HLDS--------MYR 359
           +EM+  G  +KPN VT V VL AC+ S  ++ G +          HL+S        MY 
Sbjct: 302 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYA 361

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           K   + +A+   C  DM+ + G+                   + W T+++A   HG
Sbjct: 362 KCYSLVEAR---CCFDMIAQNGK-----------------NLIAWNTMITAYASHG 397



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML------------------- 89
           VH + L+ G   + +    LI+ YV+      AR+LFD+M+                   
Sbjct: 203 VHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGE 262

Query: 90  ------------EPNVVSYTSLMAGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVI 135
                         N+VS+T++++GY   G  + AL LF +ML  G+ + PN  T  +V+
Sbjct: 263 IGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVL 322

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRN 193
            AC+  A L  G++IH      G   N  V ++L  MY KC  +  AR  FD++    +N
Sbjct: 323 PACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKN 382

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           +++W ++I A+A +  G EA+ +F E   ++  +P+      +++ C+  G + +G
Sbjct: 383 LIAWNTMITAYASHGCGVEAVSIF-ENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 437


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/480 (37%), Positives = 298/480 (62%), Gaps = 4/480 (0%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N+ T+ TV+   +    L  G+++H+ +   G + +++V ++LV+MYGKC  V+ AR  F
Sbjct: 9   NKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAF 68

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGR 245
           + +   NVVSW++++ A+AQN     ALE++RE     +   PN+    ++++AC+ LG 
Sbjct: 69  EKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGA 128

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           L  G+  H  V   G + + VV +ALV+ Y +CGS+  +  VF+ +    V++++SMI  
Sbjct: 129 LAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISA 188

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A+ G    +++L++ M+S G  P+D+ F+ VL ACS+SG+V+       S+     + P
Sbjct: 189 FAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 248

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C+VD+LGR G+L +A  L + +   P  GPLL+ T+LSA +L+  V+    A+ 
Sbjct: 249 TLEHYACMVDVLGRAGKLRDAEDLLRLMPFHP--GPLLYMTMLSACKLYTDVERGEAAAE 306

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
            + E + + ++ Y+TL+N Y+ A   ++   +R  M+  GI K+PGCSW+E+ D+ + F 
Sbjct: 307 VVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFI 366

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           AG+ +  +  E+ + ++ L R+MKE GY    T +V  DVE++ +E ++  HSE+LA+AF
Sbjct: 367 AGDKMHPQRDEIYAEIQRLGRQMKEAGYF-QDTKVVLQDVEEDEKENLLWYHSEKLAIAF 425

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           GLIS P G  +RI+KNLR+C DCH   K+IS +  R+ +VRD NRFHHF +G CSC D+W
Sbjct: 426 GLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 143/265 (53%), Gaps = 5/265 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS +  +G   +      L+N Y + +  + AR  F+++  PNVVS+++++A Y   G 
Sbjct: 32  VHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNGH 91

Query: 109 PQIALLLFQKM--LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
            ++AL L+++M      + PN  TF T++ ACS L  L  G++IH  +   GF  +LVVC
Sbjct: 92  ARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVC 151

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++LV+ YG+C  +  A+ VFD M  R+V+SW+S+I A AQ  +  EA+E++     +   
Sbjct: 152 NALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEG-T 210

Query: 227 RPNQHMLASVINACASLGRL-VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            P+  +  SV+ AC++ G +  SG     +V  +  E      + +VD+  + G +  ++
Sbjct: 211 LPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAE 270

Query: 286 KVFNRIS-NPSVVTYTSMIVGAAKY 309
            +   +  +P  + Y +M+     Y
Sbjct: 271 DLLRLMPFHPGPLLYMTMLSACKLY 295


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 319/558 (57%), Gaps = 34/558 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS + K GFL+  F ++ L++ Y +     +A ++F+EM                    
Sbjct: 32  MHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEM-------------------- 71

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV-VCS 167
           P +       +L NL   +E +F++V  AC+   +L  GKQ+H      G  +NLV + +
Sbjct: 72  PTL-------LLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV-WNLVYINN 123

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL DMYGKC   +   ++F   G R+VV+W  +I+A+  N    +A   F     +    
Sbjct: 124 SLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKG-SI 182

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           P++   +SV+++CA+L  L  G + H  ++RSG   N  VAS+L+ MYAKCGS+  + ++
Sbjct: 183 PDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQI 242

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F    + +VV +T++I    ++G   + ++LF +M+  GIKP+ +TFV VL ACSH+G V
Sbjct: 243 FEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRV 302

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG  + +SM + +GI P  +HY C+VD+L R G LD A +  + + + PD    +WG L
Sbjct: 303 EEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDAS--VWGAL 360

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           LSA R H  + +  E + +L +        YV L N     G       +R +M+  G+ 
Sbjct: 361 LSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVR 420

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPGCSW++I++ TY F   +   E+  E+  +L +L+  +K++GYV  +T    ++  +
Sbjct: 421 KEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYV-AETEFA-INTAE 478

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E +E+ +  HSE++ALAFGL+S+P G  IRI KNLR C DCH V K  S+I  R+ +VRD
Sbjct: 479 EYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREIIVRD 538

Query: 588 VNRFHHFRNGSCSCGDFW 605
           +NRFHHF NG CSCGD+W
Sbjct: 539 INRFHHFTNGICSCGDYW 556



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 17/272 (6%)

Query: 14  AASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLIN 70
           A +S     ++ S   +A +   L  C +L +L     +H++I++SGF+ N    + LI 
Sbjct: 169 ACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLIT 228

Query: 71  CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
            Y +      A Q+F+E  + NVV +T+++A     G     + LF++ML   + P+  T
Sbjct: 229 MYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYIT 288

Query: 131 FATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           F +V+ ACS    +  G    ++ I+  G        + +VD+  +  ++D A+R  +LM
Sbjct: 289 FVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELM 348

Query: 190 GCRNVVS-WTSIIVA---HAQNAQGHE-ALEMFREFNYQSRDRPNQHMLASVI---NACA 241
             +   S W +++ A   H+    G E AL++F        D P  ++L   I   N   
Sbjct: 349 PIKPDASVWGALLSACRNHSNLIMGKEVALKLFD----LEPDNPGNYVLLCNILTRNGML 404

Query: 242 SLGRLVSGKVAH-GVVVRSGCEFNDVVASALV 272
           +    V  K+   GV    GC + D+  S  V
Sbjct: 405 NEADEVRRKMESIGVRKEPGCSWIDIKNSTYV 436


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 216/637 (33%), Positives = 334/637 (52%), Gaps = 42/637 (6%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLS 60
           +K  L R+      A+S       S+     H+ + L  CKHL  L  +H++I+ SGF  
Sbjct: 23  IKHQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGF-K 81

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +  ++ HLIN Y    K  +AR +FD    P+ + + S++  Y    Q   AL ++  M+
Sbjct: 82  HHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV 141

Query: 121 --GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
             G L   + F  A ++   S + DL   +++   +     + ++V  ++++    +  D
Sbjct: 142 EKGGLE-RDVFIGAGLVDMYSKMGDLKRAREVFDKMP----KRDVVAWNAMIAGLSQSED 196

Query: 179 VDGARRVFDLM------------------GC------------RNVVSWTSIIVAHAQNA 208
              ARRVFD M                  GC               V+W  II A+ QN 
Sbjct: 197 PYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNG 256

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EA+  F +   ++   PN     SV+ A A L     G   H  +++ G   N +V 
Sbjct: 257 HAKEAISSFHQMRLENF-HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVG 315

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++L+DMYAKCG ++YS+K+FN + +   V++ +M+ G A +G G  ++ LF+ M    ++
Sbjct: 316 NSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 375

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            + V+FV VL AC H+GLV+EG +   SM  KY I PD +HY C+VD+LGR G  DE   
Sbjct: 376 IDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 435

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
             K + V+PD G  +WG LL + R+H  V +   A + L++   +    +V LS+ YA +
Sbjct: 436 FIKVMPVEPDAG--VWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 493

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G W +    RS+M   G+ K PGCSWVE++++ +AF  G+    +   +  L   L  KM
Sbjct: 494 GRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKM 553

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           ++ GYV  ++  V  +VE+E +E  +  HSERLA+ F L++ P G TI+I+KNLR+C DC
Sbjct: 554 EKIGYVPDRS-CVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADC 612

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K IS I  R  +VRD  RFHHF +G CSC D+W
Sbjct: 613 HTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 319/559 (57%), Gaps = 6/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   ++ GF +  F  ++L + Y +      A ++FD+M + + V++T+++ GY   G 
Sbjct: 141 LHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGN 200

Query: 109 PQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            + A++ F+ M    LV  ++    +V+ A   L D    + IH+ +   GF+  + V +
Sbjct: 201 LEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRN 260

Query: 168 SLVDMYGKCNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +L DMY K  D+D A RV  +  G  NVVS TS+I  + +     +AL MF E   Q  +
Sbjct: 261 ALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVE 320

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+   +S+I  CA    L  G   H  V+++    +  V+S L+DMY KCG ++ S +
Sbjct: 321 -PNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQ 379

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           +F  I   + + + + I   A++G GR ++  F+ M S GI+PN +TFV +L ACSH+GL
Sbjct: 380 LFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGL 439

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VDEG+++  SM   +GI P  +HY+C++DM GR GRLDEA K    + V P+     W +
Sbjct: 440 VDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNA--YGWCS 497

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A R+ G  ++   A++ +++        +V+LS  YA  G+WE+V ++R  M+   I
Sbjct: 498 LLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRI 557

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K PG SWV+   +T+ F + +    +  ++   L EL  ++KE GYV   T  +  ++E
Sbjct: 558 KKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYV-PDTRFLPCNLE 616

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           D A++ I+  HSER+A+AF LIS+P    I + KNLR+C DCH   K IS +  RD +VR
Sbjct: 617 DTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVR 676

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D +RFHHF  G CSCGD+W
Sbjct: 677 DNSRFHHFVKGGCSCGDYW 695



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 197/385 (51%), Gaps = 8/385 (2%)

Query: 49  VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+ ++ SG  + +TF  NHLI  Y        A +LFD M  PN+VS+T+L++G     
Sbjct: 39  LHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNS 98

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL  F  M    + P +F  ++  +A + LA    G Q+H      GF   L V S
Sbjct: 99  MHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVAS 158

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L DMY K   +  A RVFD M  ++ V+WT++I  +A+N     A+  FR+   +    
Sbjct: 159 NLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVG 218

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            +QH+L SV++A   L      +  H  V++SG E    V +AL DMYAK   ++ + +V
Sbjct: 219 ADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARV 278

Query: 288 FNRISNPS--VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
             +I   S  VV+ TS+I G  +      +L +F E+  +G++PN+ TF  ++  C+   
Sbjct: 279 V-KIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQA 337

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L+++G Q L +   K  +I D+   + ++DM G+ G +  + +L K I+   D   + W 
Sbjct: 338 LLEQGAQ-LHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTD---IAWN 393

Query: 406 TLLSASRLHGRVDIAVEASNQLIES 430
             ++    HG    A+ A +++  S
Sbjct: 394 AAINVLAQHGHGREAIRAFDRMTSS 418


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 324/581 (55%), Gaps = 12/581 (2%)

Query: 33  FIQQLQECKH---LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C H   +      H  + K G + + F  + L++ Y +     +A Q+ +   
Sbjct: 124 FTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEH 183

Query: 90  -----EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
                + +   Y S++   +  G+   A+ +  +M+   V  +  T+ +V+  C  + DL
Sbjct: 184 GNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDL 243

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
             G Q+H  +   G  +++ V S LVDM+GKC DV  AR+VFD +  RNVV WTS++ A+
Sbjct: 244 GLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAY 303

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            QN +  E L +    + +     N+   A ++NA A +  L  G + H  V + G +  
Sbjct: 304 LQNGEFEETLNLLSCMDREG-TMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNR 362

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
            +V +AL++MY+KCG ++ S  VF  + N  ++T+ +MI G +++GLG+ +L LF +M+S
Sbjct: 363 VIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLS 422

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G  PN VTFVGVL AC+H  LV+EG  +L+ + + + + P  +HYTCVV +L R G L+
Sbjct: 423 AGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLE 482

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           EA    ++ QV  D   + W  LL+A  +H   ++  + +  +++ + +    Y  LSN 
Sbjct: 483 EAENFMRTTQVKWD--VVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNM 540

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
           YA A  W++V  +R  M+   + KEPG SW+EIR+  + F +  +      ++ + ++ L
Sbjct: 541 YAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLL 600

Query: 505 ERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRM 564
              +K+ GYV      V  DVEDE +E  +  HSE+LA+A+GL+ IP    IR++KNLR+
Sbjct: 601 LEMIKQLGYVPNIEA-VLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRI 659

Query: 565 CRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           C DCH   KLIS +  R  +VRD +RFHHFR+G+C+C D W
Sbjct: 660 CEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 176/360 (48%), Gaps = 10/360 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N   LN LIN YV+  K ++AR LFDEM   +VVSY  LM GY++ G+    + LF+ M+
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV 113

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            +L  PNE+ F TV+ AC+    +  G Q H  +  FG  ++  V SSLV MY KC  VD
Sbjct: 114 SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVD 173

Query: 181 GARRVFD-----LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
            A +V +     +    +   + S++ A  ++ +  EA+E+            +     S
Sbjct: 174 LALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRM-VDEGVVWDSVTYVS 232

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+  C  +  L  G   H  +++ G  F+  V S LVDM+ KCG V  + KVF+ + N +
Sbjct: 233 VMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRN 292

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           VV +TS++    + G    +L+L + M   G   N+ TF  +L+A +    +  G   L 
Sbjct: 293 VVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLH 351

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +   K GI         +++M  + G +D +Y +   ++   +   + W  ++     HG
Sbjct: 352 ARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMR---NRDIITWNAMICGYSQHG 408


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 322/567 (56%), Gaps = 4/567 (0%)

Query: 39  ECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS 98
           E   L+SL ++H   L+  F       N  I  Y +      A  +F  M   +V S+ +
Sbjct: 428 EESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNA 487

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++ G+   G P  AL  + +M    + P++F+  +++ AC  L  L  GK+IH  +   G
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNG 547

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            + N  V  SL+ +Y  C+     R  F+ MG +N V W +++  ++QN   +EAL +FR
Sbjct: 548 LEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +      + P++  +AS++ AC+ L  L  GK  H   +++    ++ VA +L+DMYAK 
Sbjct: 608 QMLSDGLE-PDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKS 666

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G + +S ++FNR++   V ++  MI G   +G G  +++LF +M     +P+  TF+GVL
Sbjct: 667 GFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVL 726

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC H+GLV EG+ +L  M   Y + P+ +HY CV+DMLGR GRL+EA      +  +PD
Sbjct: 727 QACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPD 786

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
               +W +LLS+S  +  +++  + + +L+      A++Y+ LSN YA AG+W+ V  +R
Sbjct: 787 AK--IWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVR 844

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
            +MK   + K+ GCSW+E+R + Y+F AG        E+  +   LE+++ E GY     
Sbjct: 845 QKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYT-PDC 903

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V  ++E+  + +I+  HSE++A+ FG ++  +G T+RI KNLR+CRDCH+  K IS  
Sbjct: 904 SCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKA 963

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R+ V+RD  RFHHF+ G CSCGD+W
Sbjct: 964 AKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 163/306 (53%), Gaps = 3/306 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   +K G + + F  N +I  Y +      A +LFD+M E N++S+ SL+ G+   G
Sbjct: 231 SVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290

Query: 108 QPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
               A   F+ +L  G+ + P+  T  T++  CS   ++  G  IH      G  + L+V
Sbjct: 291 FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMV 350

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           C++L+DMY KC  +  A  +F  +  ++VVSW S+I A+++     E  ++ R+   +  
Sbjct: 351 CNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEE 410

Query: 226 -DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               N+  + +++ AC     L+S +  HG  +R   ++ +++ +A +  YAKCGS+ ++
Sbjct: 411 LMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFA 470

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
           + VF  ++  SV ++ ++I G A+ G    +LD + EM   GI P+D + V +L AC   
Sbjct: 471 EHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRL 530

Query: 345 GLVDEG 350
           GL+  G
Sbjct: 531 GLLQYG 536



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 153/289 (52%), Gaps = 7/289 (2%)

Query: 59  LSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
            S  F LN  LI  Y        +R +FD +L  N+  + +L++GY+       A+  F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 118 KMLGNLVW-PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           +++    + P+ FTF  +IKAC+   D+  GK +H      G   +L V ++++ +YGKC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR--PNQHMLA 234
             +D A  +FD M  +N++SW S+I   ++N    EA   FR    +S D   P+   + 
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL-LESGDGLIPDVATMV 317

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
           +++  C+  G +  G V HG+ V+ G     +V +AL+DMY+KCG ++ +  +F +I N 
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK 377

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG--IKPNDVTFVGVLHAC 341
           SVV++ SMI   ++ G    + DL  +M      ++ N+VT + +L AC
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F  + V+ + L+ MY  C     +R VFD +  +N+  W +++  + +N    EA+  F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           E    +  +P+      +I AC     +  GK  HG+ V+ G   +  V +A++ +Y KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVG 336
           G ++ + ++F+++   +++++ S+I G ++ G    +   F  ++    G+ P+  T V 
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L  CS  G VD G+  +  M  K G++ +      ++DM  + G L EA  L + I+  
Sbjct: 319 LLPVCSGEGNVDVGMV-IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-- 375

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
            +   + W +++ A    G V    +   ++    + +    VT+ N      E   + S
Sbjct: 376 -NKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 457 LRS 459
           LR+
Sbjct: 435 LRA 437


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 326/569 (57%), Gaps = 53/569 (9%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ YV+  K   ARQLFD+M E ++VS+T++M+GY+  G    +L LFQ+M    V P+
Sbjct: 308 LVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPD 367

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E    TV+ AC  L D   G+ +H  I T+G   +  + ++L+D+Y KC  +D A R F+
Sbjct: 368 EVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFE 427

Query: 188 LMGCR-------------------------------NVVSWTSIIVAHAQNAQGHEALEM 216
            + C+                               ++VSW +++ A+ ++   +E+ E+
Sbjct: 428 QLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEI 487

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           F +    S  +P++  L S++++CA +G L  G   +  + ++    + ++ +AL+DMY 
Sbjct: 488 FCKMQ-SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYG 546

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           KCG V  + ++F +I   +V  +T+M+   A  G    ++DL+ EM  RG+KP+ VTF+ 
Sbjct: 547 KCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIA 606

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           +L ACSH GLVDEG ++ + +   Y IIP   HY C+VD+LGR G L+E  K  + + ++
Sbjct: 607 LLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIE 666

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456
           PD    +W +L+ A R H  V++A +A  QLIE +     A+V LSN YA AG W++V  
Sbjct: 667 PDVS--IWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSK 724

Query: 457 LRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG 516
           +R+++  TG+ K+PG + +E     + F A N +    +++L +L+++ER++        
Sbjct: 725 VRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLV---SADILCMLQDIERRL-------- 773

Query: 517 KTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
              LV  ++ D   +     HSERLA+AFGLI+  +   IR++ ++RMCRDCH V KLIS
Sbjct: 774 ---LVKQELSDTTSQ-----HSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLIS 825

Query: 577 DIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              +R+ V+RD  RFH F +G CSC D+W
Sbjct: 826 QAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 215/474 (45%), Gaps = 47/474 (9%)

Query: 8   NLIFTLAASSL----TRQNKRSSCHTKAHFI-QQLQECKHLISLASVHSEILKSGFLSNT 62
           N+ F+  + S+    T   K S    + H+I   L+ C ++   + +H+ ++ +  + + 
Sbjct: 8   NIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDP 67

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
              + ++   + +     A Q+     EP  + + +L+   +  G PQ  L  +  M+  
Sbjct: 68  EITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQ 127

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V  +  TF  +I AC    D+  G ++H  I   GF  N  + ++L+ +Y KC  +   
Sbjct: 128 GVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEV 187

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
            ++F+ M  R+V+SW ++I  +       EAL++F E    S   P++  + S+++ CA 
Sbjct: 188 CQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM-LVSGVLPDEITMVSLVSTCAK 246

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG----------------------- 279
           L  L  GK  H  +V +       + + LVDMY+KCG                       
Sbjct: 247 LKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306

Query: 280 ----------SVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
                      ++ + ++F++++  S+V++T+M+ G  + G    SL+LF +M    + P
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIP 366

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           ++V  V VL AC H    D G + + +    YG++ D      ++D+  + G+LDEA + 
Sbjct: 367 DEVALVTVLSACVHLEDFDLG-RSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN----QQVANAYV 439
            + +   P      W ++L      G VD A +  N++ E +      + NAYV
Sbjct: 426 FEQL---PCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYV 476



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 136/274 (49%), Gaps = 13/274 (4%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123
           + N +++ + R      AR  F+++ E ++VS+ +++  Y+       +  +F KM  + 
Sbjct: 436 SWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSN 495

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V P++ T  +++ +C+ +  L  G  ++ +IE      + ++ ++L+DMYGKC  V+ A 
Sbjct: 496 VKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAY 555

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            +F  +  +NV  WT+++ A+A   Q  EA++++ E   +   +P+     +++ AC S 
Sbjct: 556 EIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGV-KPDHVTFIALLAAC-SH 613

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVAS-----ALVDMYAKCGSVNYSDKVFNRIS-NPSVV 297
           G LV     +   +RS   F +++ +      +VD+  + G +  + K   R+   P V 
Sbjct: 614 GGLVDEGYKYFNKLRS---FYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVS 670

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
            ++S++     +     +   F ++I   I P +
Sbjct: 671 IWSSLMRACRSHHNVELAEQAFKQLIE--IDPTN 702


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 322/556 (57%), Gaps = 4/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H   LKSG +S+ F  N L+  Y        A ++ D++   ++  ++S ++GY+  G  
Sbjct: 159 HGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAF 218

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           +    + ++M    +  +  T+ + ++ CS L DL   +QIH+ +   GF   +    ++
Sbjct: 219 KEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAI 278

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           ++MYGKC  V  A+RVFD    +N+V  T+I+ A+ Q+    EAL +F + + +    PN
Sbjct: 279 INMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVP-PN 337

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           ++  A  +N+ A L  L  G + HG+V++SG   + +V +ALV+MYAK GS+  + K F+
Sbjct: 338 EYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFS 397

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            ++   +VT+ +MI G + +GLGR  L+ F+ M+  G  PN +TF+GVL ACSH G V++
Sbjct: 398 GMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQ 457

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G+ + + + +K+ + PD +HYTC+V +L + G   +A    ++  ++ D   + W  LL+
Sbjct: 458 GLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWD--VVAWRALLN 515

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A  +     +  + +   I      +  YV LSN +A + EWE V  +RS M + G+ KE
Sbjct: 516 ACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKE 575

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG SW+ IR+QT+ F A        + + + ++E+  K++  GY     G VF DV++E 
Sbjct: 576 PGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVLSKIRPLGYSPDVAG-VFHDVDEEQ 634

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           RE+ +  HSE+LA+A+GL+  P+   + + KN+R+C DCH   KLIS I +R  V+RD N
Sbjct: 635 REDNLSYHSEKLAVAYGLMKTPENSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSN 694

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHFR+G CSC D+W
Sbjct: 695 RFHHFRDGQCSCCDYW 710



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 190/389 (48%), Gaps = 17/389 (4%)

Query: 48  SVHSEIL---KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           S+H  ++   +S    + + +N LIN YV+  +T  AR++FD M E NVVS+ ++M GY 
Sbjct: 52  SIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQ 111

Query: 105 NMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           N G     L LF+ M+  +   PNEF    V K+CS    +  GKQ H      G   + 
Sbjct: 112 NSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHE 171

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V ++LV MY  C+    A RV D +   ++  ++S +  + +     E  E+ R    +
Sbjct: 172 FVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKE 231

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
                N   L S +  C++L  L   +  H  +VR G       + A+++MY KCG V Y
Sbjct: 232 DLVLDNITYL-SCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLY 290

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           + +VF+     ++V  T+++    +      +L+LF++M ++ + PN+ TF   L++ + 
Sbjct: 291 AQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAE 350

Query: 344 SGLVDEG-IQH---LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
             L+  G + H   L S YR + ++ +A     +V+M  ++G +++A K    +      
Sbjct: 351 LSLLKHGDLLHGLVLKSGYRNHVMVGNA-----LVNMYAKSGSIEDARKAFSGMTFR--- 402

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLI 428
             + W T++     HG     +EA ++++
Sbjct: 403 DIVTWNTMICGFSHHGLGREGLEAFDRMM 431



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 134 VIKACSMLADLITGKQIHTHI---ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           ++K C+  + L TG+ IH H+          ++   +SL+++Y KC +   AR+VFDLM 
Sbjct: 37  LLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMP 96

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSW +++  +  +    E L++F+   +    RPN+ +   V  +C+S GR+  GK
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGK 156

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             HG  ++SG   ++ V + LV MY+ C     + +V + +    +  ++S + G  + G
Sbjct: 157 QFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECG 216

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
             +   ++   M    +  +++T++  L  CS+   ++   Q    M R  G   + +  
Sbjct: 217 AFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVR-LGFNSEVEAS 275

Query: 371 TCVVDMLGRTGRL 383
             +++M G+ G++
Sbjct: 276 GAIINMYGKCGKV 288



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 4/242 (1%)

Query: 11  FTLAASSLTRQNKRSSCHTKAHFIQQLQECKHL--ISLA-SVHSEILKSGFLSNTFTLNH 67
           F   A  L R  K         ++  L+ C +L  ++LA  +HS +++ GF S       
Sbjct: 218 FKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGA 277

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +IN Y +  K   A+++FD     N+V  T++M  Y      + AL LF KM    V PN
Sbjct: 278 IINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPN 337

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           E+TFA  + + + L+ L  G  +H  +   G++ +++V ++LV+MY K   ++ AR+ F 
Sbjct: 338 EYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFS 397

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R++V+W ++I   + +  G E LE F        + PN+     V+ AC+ +G + 
Sbjct: 398 GMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAG-EIPNRITFIGVLQACSHVGFVE 456

Query: 248 SG 249
            G
Sbjct: 457 QG 458


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/595 (35%), Positives = 326/595 (54%), Gaps = 26/595 (4%)

Query: 32  HFIQQLQECKHLI--SLASVHSEILK---SGFLSNTFTLNHLINCYVRLKKTQV--ARQL 84
           H I  L E   +    L  +H++ L+   S   +  F   +++  Y  L +  +  A ++
Sbjct: 22  HLIHLLNEPTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRV 81

Query: 85  FDEMLEPNVVSYTSLMAGY---INMGQPQIALLLFQKMLG---NLVWPNEFTFATVIKAC 138
           F     PN   + +L+  Y    N      A+ L++ M+        P+  TF  V+KAC
Sbjct: 82  FHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKAC 141

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           +    L  GKQ+H H+   GF+ +  +C+SLV  Y  C  +D A ++F  M  RN VSW 
Sbjct: 142 AYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWN 201

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
            +I ++A+      AL MF E   Q    P+ + + SVI+ACA LG L  G   H  +++
Sbjct: 202 IMIDSYAKGGIFDTALRMFGEM--QRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILK 259

Query: 259 SGCEFNDV----VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
             C+ N V    V + LVDMY K G +  + +VF  ++   +  + SMI+G A +G  + 
Sbjct: 260 K-CDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKA 318

Query: 315 SLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
           +L+ +  M+    I PN +TFVGVL AC+H G+VDEGI H D M ++Y + P  +HY C+
Sbjct: 319 ALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCL 378

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS-RLHGRVDIAVEASNQLIESNQ 432
           VD+  R GR++EA  L   + + PD   ++W +LL A  + +  V+++ E + Q+ ES  
Sbjct: 379 VDLFARAGRINEALNLVSEMSIKPDA--VIWRSLLDACCKQYASVELSEEMAKQVFESEG 436

Query: 433 QVANA--YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNAL 490
            V ++  YV LS  YA A  W +V  LR  M   G+ KEPGCS +EI    + F+AG+  
Sbjct: 437 SVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTT 496

Query: 491 FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISI 550
             +   +  ++ E+E K++  GY+   +G   VD  ++ +   + LHSERLA+AFG+++ 
Sbjct: 497 HPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNS 556

Query: 551 PKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              + IR+ KNLR+C DCH V KLIS I   + +VRD  RFHHF++G+CSC D+W
Sbjct: 557 KPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 170/373 (45%), Positives = 246/373 (65%), Gaps = 3/373 (0%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
           +A ++ ACAS+  L  GK  H  +++ G E +  V++ LVDMY KCG +  + +VF+++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
            P V ++ +MI G A++G G+ ++ LF +M+  G+KPN +TFV VL  CSH+GLVDEG  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           + DSM R +GI P A+HY+C+VD+ GR G LDEA      + V+P+    +WG+LL A R
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNAS--VWGSLLGACR 178

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG +++A  A  QLIE   +    YV LSN YA AG W++   +R  MK   + KEPGC
Sbjct: 179 VHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGC 238

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           SW+E++++ + F  G++   +  E+   L  L  +MK  GY+   T  V  DVE+E +E 
Sbjct: 239 SWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYI-PNTNFVLHDVEEEQKEW 297

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           I+G HSE+LA+AFG+IS P G TIR++KNLR+C DCH   K IS IV R+ V+RD +RFH
Sbjct: 298 ILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFH 357

Query: 593 HFRNGSCSCGDFW 605
           HF++G CSCGD+W
Sbjct: 358 HFKDGQCSCGDYW 370



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 11/213 (5%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  + +L     VH++I+K GF  +    N L++ Y +  + + A+++F ++LEP+V
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDV 64

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHT 152
            S+ ++++G    G  + A+LLF++ML   V PN+ TF  V+  CS    +  G+    +
Sbjct: 65  ASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDS 124

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---HAQNA 208
                G        S +VD++G+   +D A    + M    N   W S++ A   H    
Sbjct: 125 MTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIE 184

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
               A+E   E    + + P  ++L S I A A
Sbjct: 185 LAERAVEQLIEL---TPENPGTYVLLSNIYAAA 214


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 319/565 (56%), Gaps = 14/565 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   L+ G   +    N L++ Y R    + AR LF + +  N VS+ +++AG    GQ
Sbjct: 345 IHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF-KRIPCNAVSWNTMIAGSSQKGQ 403

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD----LITGKQIHTHIETFGFQYNLV 164
            + A+ LFQ+M    + P   T+  +++A +   +    +  G+++H+ I + G+     
Sbjct: 404 MKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPA 463

Query: 165 VCSSLVDMYGKCNDVDGARRVFD---LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + +++V MY  C  +D A   F    +    +VVSW +II + +Q+  G  AL  FR  +
Sbjct: 464 IGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMD 523

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                 PNQ    +V++ACA    L  G++ H  +  SG E N  VA+AL  MY +CGS+
Sbjct: 524 LHGVA-PNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSL 582

Query: 282 NYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
             + ++F +++    VV + +MI   ++ GL   +L LF  M   G +P++ +FV VL A
Sbjct: 583 ESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSA 642

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
           CSH GL DEG +   SM + YGI P   HY C VD+LGR G L +A +L + + V P   
Sbjct: 643 CSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT-- 700

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            L+W TLL A R +  VD    A++ + E +    +AYV LSN  A AG+W+    +R+E
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           M+  G+ KE G SW+EI+ + + F AG+    R  E+   L  L  +++E GYV   T L
Sbjct: 761 MESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYV-PDTRL 819

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V   V++  +E ++  HSERLA+A G++S     T+R+MKNLR+C DCH+  K IS IV 
Sbjct: 820 VLRKVDEAEKERLLCQHSERLAIALGVMSSSTD-TVRVMKNLRVCEDCHNATKFISKIVN 878

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++ VVRD +RFHHF +GSCSCGD+W
Sbjct: 879 KEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 13/369 (3%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L  C  +    ++H  + +SG          L + Y RL     A+++FD   E +VVS+
Sbjct: 235 LTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSW 294

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            +++  Y   G    A LLF +ML   + P++ T       CS    L  G+ IH     
Sbjct: 295 NAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCS---SLRFGRMIHGCALE 351

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G   ++V+ ++L+DMY +C   + AR +F  + C N VSW ++I   +Q  Q   A+E+
Sbjct: 352 KGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVEL 410

Query: 217 FREFNYQSRDRPNQHMLASVINACAS----LGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
           F+    +    P +    +++ A AS       +  G+  H  +V  G      + +A+V
Sbjct: 411 FQRMQLEGMA-PVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVV 469

Query: 273 DMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
            MYA CG+++ +   F R +      VV++ ++I   +++G G+ +L  F  M   G+ P
Sbjct: 470 KMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAP 529

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           N +T V VL AC+ +  + EG + +    R  G+  +    T +  M GR G L+ A ++
Sbjct: 530 NQITCVAVLDACAGAAALTEG-EIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREI 588

Query: 390 AKSIQVDPD 398
            + + V+ D
Sbjct: 589 FEKVAVERD 597



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 210/454 (46%), Gaps = 22/454 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ I+  G        NHL+  Y++ +      ++F  +   +  S+T+++  Y   GQ
Sbjct: 51  IHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQ 108

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A+ +F +M    V  +  TF  V+KAC+ L DL  G+ IH  I   G +   V+ + 
Sbjct: 109 AKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANL 168

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +YG C  V  A  +F+ M  R++VSW + I A+AQ+     ALE+F+    +   RP
Sbjct: 169 LLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQLEGV-RP 226

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
            +  L   +  CA++ +    +  H +V  SG E   VV++AL   YA+ G +  + +VF
Sbjct: 227 ARITLVIALTVCATIRQ---AQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVF 283

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +R +   VV++ +M+   A++G    +  LF  M+  GI P+ VT V     CS      
Sbjct: 284 DRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFG- 342

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
              + +     + G+  D      ++DM  R G  +EA  L K I  +     + W T++
Sbjct: 343 ---RMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCN----AVSWNTMI 395

Query: 409 SASRLHGRVDIAVEASNQL-IESNQQVANAYVTLSNTYALAGEWENV----HSLRSEMKR 463
           + S   G++  AVE   ++ +E    V   Y+ L    A   E          L S +  
Sbjct: 396 AGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455

Query: 464 TGIHKEP--GCSWVEIRDQTYAFYAGNALFERGS 495
            G   EP  G + V++     A     A F+RG+
Sbjct: 456 CGYASEPAIGTAVVKMYASCGAIDEAAASFQRGA 489



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 197/412 (47%), Gaps = 27/412 (6%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  L+ C  L  L+   S+H+ I++SG    +   N L++ Y        A  LF++M 
Sbjct: 131 FLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM- 189

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E ++VS+ + +A     G   IAL LFQ+M    V P   T    +  C   A +   + 
Sbjct: 190 ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVC---ATIRQAQA 246

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  +   G +  LVV ++L   Y +   +  A+ VFD    R+VVSW +++ A+AQ+  
Sbjct: 247 IHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA  +F    ++    P++  L +    C+SL R   G++ HG  +  G + + V+ +
Sbjct: 307 MSEAALLFARMLHEGIS-PSKVTLVNASTGCSSL-RF--GRMIHGCALEKGLDRDIVLGN 362

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           AL+DMY +CGS   +  +F RI   + V++ +MI G+++ G  + +++LF  M   G+ P
Sbjct: 363 ALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAP 421

Query: 330 NDVTFVGVLHACS----HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
              T++ +L A +     +  + EG + L S     G   +    T VV M    G +DE
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEG-RKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDE 480

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHG----------RVDIAVEASNQL 427
           A    +   ++     + W  ++S+   HG          R+D+   A NQ+
Sbjct: 481 AAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQI 532


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 338/589 (57%), Gaps = 25/589 (4%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTL---NHLINCYVRLKKTQVARQLFDEMLEPNV 93
           LQ C  +  L  +H+  L++ +     TL     ++           A ++FD +   + 
Sbjct: 32  LQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 91

Query: 94  VSYTSLM-AGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIH 151
             + +L+ A   ++ + + A +L++KML      P++ TF  V+KAC+ +     GKQ+H
Sbjct: 92  FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 151

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
             I   GF  ++ V + L+ +YG C  +D AR+VFD M  R++VSW S+I A  +  +  
Sbjct: 152 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 211

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN---DV-V 267
            AL++FRE   Q    P+ + + SV++ACA LG L  G  AH  ++R  C+ +   DV V
Sbjct: 212 SALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK-CDVDVAMDVLV 268

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-- 325
            ++L++MY KCGS+  +++VF  +    + ++ +MI+G A +G    +++ F+ M+ +  
Sbjct: 269 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 328

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
            ++PN VTFVG+L AC+H G V++G Q+ D M R Y I P  +HY C+VD++ R G + E
Sbjct: 329 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 388

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHG-RVDIAVEASNQLI-------ESNQQVANA 437
           A  +  S+ + PD   ++W +LL A    G  V+++ E +  +I        SN   + A
Sbjct: 389 AIDMVMSMPMKPDA--VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGA 446

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LS  YA A  W +V  +R  M   GI KEPGCS +EI   ++ F+AG+    +  ++
Sbjct: 447 YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQI 506

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVD-VEDEAREEIVGLHSERLALAFGLISIPKGITI 556
              L+ ++ +++  GY+  ++    VD   D ++E  + LHSERLA+AFGLI++P    I
Sbjct: 507 YQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPI 566

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI KNLR+C DCH+V KLIS +   + +VRD  RFHHF++GSCSC D+W
Sbjct: 567 RIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/591 (35%), Positives = 334/591 (56%), Gaps = 26/591 (4%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  +  LA   ++H  IL S    +    + L+N Y++  +   AR++F+ M 
Sbjct: 114 FACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 173

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGK 148
             NV SYT++++ Y+  G+   AL LF +M     + PN +TFAT++ A   L +L  G+
Sbjct: 174 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 233

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           ++H H+ + GF  N+VV ++LV MYGKC     AR+VFD M  RNV+SWTS+I A+AQ+ 
Sbjct: 234 KVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHG 293

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL +F+  + +    P+    +S +NACA LG L  G+  H  VV +    +  + 
Sbjct: 294 NPQEALNLFKRMDVE----PSGVSFSSALNACALLGALDEGREIHHRVVEAHLA-SPQME 348

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++L+ MYA+CGS++ + +VFNR+      +  +MI    ++G  + +L ++  M   GI 
Sbjct: 349 TSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIP 408

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            + +TFV VL ACSH+ LV +      S+   +G++P  +HY C+VD+LGR+GRL +A +
Sbjct: 409 ADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEE 468

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           L +++    D   + W TLLS  + HG ++    A+ ++ E        YV LSN YA A
Sbjct: 469 LVETMPYQTDA--VAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAA 526

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG-------SEVLSLL 501
             +++   +R EM+  G+      S++EI ++ + F +G    ++          V SLL
Sbjct: 527 KRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLL 586

Query: 502 RELERKMKERGYVGGKTGLVFVDVE----DEAREEIVGLHSERLALAFGLISIP---KGI 554
            EL   MK+ GYV   T  V+++ +    +E ++  +  HSERLA+A+GLI+        
Sbjct: 587 LELLEPMKQAGYV-PDTREVYLEQQGGTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSR 645

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R++ + R+C DCH   KL+SDI+E+   VRD NRFHHF  G+CSCGD W
Sbjct: 646 PLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSCGDHW 696



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 198/356 (55%), Gaps = 11/356 (3%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +Q L+E + L      H  ++ +GF ++      L+  Y +      A+++F+ M   ++
Sbjct: 23  LQALEEGRRL------HEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDL 76

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            +++S+++ Y   G+ ++A++L+++M+   V PN  TFA  +  C+ +A L  G+ IH  
Sbjct: 77  FAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQR 136

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I       + V+  SL++MY KC+++  AR+VF+ M  RNV S+T++I A+ Q  +  EA
Sbjct: 137 ILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEA 196

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+F   +      PN +  A+++ A   LG L  G+  H  +   G + N VV +ALV 
Sbjct: 197 LELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVT 256

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCGS   + KVF+ ++  +V+++TSMI   A++G  + +L+LF  M    ++P+ V+
Sbjct: 257 MYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVS 313

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           F   L+AC+  G +DEG +    +   +   P  +  T ++ M  R G LD+A ++
Sbjct: 314 FSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYARCGSLDDARRV 367



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 184/370 (49%), Gaps = 34/370 (9%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           +  ++F   +++ AC+ L  L  G+++H H+   GF+ ++ + ++L+ MY KC  +D A+
Sbjct: 6   IVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAK 65

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           RVF+ M  +++ +W+SII A+A+  +G  A+ ++R    +  + PN    A  +  CAS+
Sbjct: 66  RVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVE-PNVVTFACALGGCASV 124

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             L  G+  H  ++ S    +DV+  +L++MY KC  +  + KVF  +   +V +YT+MI
Sbjct: 125 AGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMI 184

Query: 304 VGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEGIQ---HLDS--- 356
               + G    +L+LF+ M     I+PN  TF  +L A    G +++G +   HL S   
Sbjct: 185 SAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGF 244

Query: 357 ------------MYRKYGIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKS 392
                       MY K G   +A+             +T ++    + G   EA  L K 
Sbjct: 245 DTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKR 304

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           + V+P G  + + + L+A  L G +D   E  ++++E++        +L + YA  G  +
Sbjct: 305 MDVEPSG--VSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCGSLD 362

Query: 453 NVHSLRSEMK 462
           +   + + MK
Sbjct: 363 DARRVFNRMK 372


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 324/591 (54%), Gaps = 8/591 (1%)

Query: 19  TRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTF-TLNHLINCYVRLKK 77
           T    +S   ++   I  ++ C     L  +H+ I+++  + N F +L  L    +   +
Sbjct: 57  THPLPKSRDESENQLISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSR 116

Query: 78  TQ-VARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
               + Q+F ++++P+   Y  ++  Y     P+    L+++M    V PN  + + V+K
Sbjct: 117 DMGYSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMK 176

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           +C  ++ L+ G QIH  I   G Q + ++ ++L+D+Y  C+  + A +VFD +   + VS
Sbjct: 177 SCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVS 236

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHG 254
           W  +I     N +  +AL MF +    + D   P+      ++ ACA+LG L  G+  H 
Sbjct: 237 WNVLISCCIHNRRTRDALRMF-DIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHN 295

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            +   G +    + ++L+ MY++CG +  +  +F R+   +VV++++MI G A +G GR 
Sbjct: 296 YIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGRE 355

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +++ F +M   G+ P+D T  GVL ACSH GLVD+G+   D M + +GI P+  HY C+V
Sbjct: 356 AIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMV 415

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+LGR G LD+AY+L  S+ + PD    LW TLL A R+H    +       LIE   Q 
Sbjct: 416 DLLGRAGLLDQAYQLIMSMVIKPDS--TLWRTLLGACRIHRHATLGERVIGHLIELKAQE 473

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
           A  YV L N Y+  G W+ V  LR  MK  GI   PGCS +E++ + + F   + L  R 
Sbjct: 474 AGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRT 533

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
            E+  +L E+ +++K  GYV   +  +  ++  E +   +  HSE+LA+AFG+++ P G 
Sbjct: 534 DEIYEMLDEIGKQLKIAGYVAELSSELH-NLGAEEKGNRLSYHSEKLAIAFGVLATPPGT 592

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           TIR+ KNLR+C DCH+  K++S    R+ V+RD  RFHHFR G CSC  +W
Sbjct: 593 TIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 338/588 (57%), Gaps = 24/588 (4%)

Query: 38  QECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYT 97
           Q+C +  +L  +H++I+ +G    T+ L+HLI    +      A ++F+ +  P +  Y 
Sbjct: 157 QKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKFN-LPYAFKIFNYISNPTIFLYN 215

Query: 98  SLMAGYINM---GQPQIALLLFQKMLGNL-VWPNEFTFATVIKAC-SMLADLITGKQIHT 152
           +L++  IN     Q  +A  L+ K+L N  + PN FTF ++ KAC S  +    G  +HT
Sbjct: 216 TLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHT 275

Query: 153 HIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           H+  F    ++  V +SL++ Y K   +  +R +FD +   ++ +W  I+ A+A+++  H
Sbjct: 276 HVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYH 335

Query: 212 EALEMFREFN------YQSRD------RPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
                F + +      Y  RD      RPN+  + ++I+AC++LG +  G   H  V+R+
Sbjct: 336 SYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRN 395

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRI--SNPSVVTYTSMIVGAAKYGLGRFSLD 317
             + N  V +A VDMY+KCG +N + +VF+++  ++     YT+MI G A +G G  +L+
Sbjct: 396 KIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALE 455

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           L+ +M  +G+ P+  TFV  + ACSH GLV+EG++   SM   +G+ P  +HY C++D+L
Sbjct: 456 LYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLL 515

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR GRL EA +    + + P+   +LW +LL A+R+HG + +   A  +LIE   + +  
Sbjct: 516 GRAGRLKEAEEWLADMPMKPNA--VLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGN 573

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN YA  G   +V  +R  MK  G++K PG S VEI+   + F  G+       E+
Sbjct: 574 YVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEI 633

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
              + E+  +++E G+   +T     D+E+E +E ++  HSERLA+AF LI+ P  + IR
Sbjct: 634 YLKIAEINSRLEEYGH-KARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIR 692

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLR+C DCH   KLIS    R+ +VRD NRFHHF++GSCSC D+W
Sbjct: 693 IIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 325/562 (57%), Gaps = 12/562 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K+    + F    L++ Y +      AR++FD M   +++ + +L++G  + G+
Sbjct: 328 IHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGR 387

Query: 109 PQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
               L LF +M   G  +  N  T A+V+K+ +    +   +Q+H   E  G   +  V 
Sbjct: 388 HGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVI 447

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+D Y KC  +D A +VF      +++S T+++ A +Q   G +A+++F +   +  +
Sbjct: 448 NGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLE 507

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P+  +L+S++NAC SL     GK  H  +++     +    +ALV  YAKCGS+  +D 
Sbjct: 508 -PDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADM 566

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
            F+ +    +V++++MI G A++G G+ +LDLF+ M+  G+ PN +T   VL AC+H+GL
Sbjct: 567 AFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGL 626

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           VD+  ++ +SM   +GI    +HY C++D+LGR G+L++A +L  ++    +    +WG 
Sbjct: 627 VDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAA--VWGA 684

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL ASR+H   ++   A+ +L     + +  +V L+NTYA AG W+ +  +R  MK + +
Sbjct: 685 LLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNV 744

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KEP  SWVEI+D+ + F  G+       ++   L EL   M + GYV      V VD+ 
Sbjct: 745 KKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPN----VEVDLH 800

Query: 527 DEAREE---IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D  R E   ++  HSERLA+AF LIS P G  IR+ KNLR+CRDCH  FK IS IV R+ 
Sbjct: 801 DVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREI 860

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           ++RD+NRFHHF NG+CSCGD+W
Sbjct: 861 IIRDINRFHHFTNGTCSCGDYW 882



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 207/382 (54%), Gaps = 18/382 (4%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           + L + A +HS +LKSG L+  F+ NHL+  Y R +    AR +FDE+ +P  VS++SL+
Sbjct: 18  RSLFAGAHLHSHLLKSGLLAG-FS-NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLV 75

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
             Y N G P+ ALL F+ M G  V  NEF    V+K C+   D+  G Q+H         
Sbjct: 76  TAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CA--PDVRFGAQVHALAVATRLV 132

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFD----LMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
           +++ V ++LV +YG    VD ARR+FD    + G RN VSW ++I A+ +N Q  +A+ +
Sbjct: 133 HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGV 192

Query: 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276
           FRE  + S +RPN+   + V+NAC     L +G+  HG VVR+G E +   A+ALVDMY+
Sbjct: 193 FREMVW-SGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYS 251

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           K G +  +  VF ++    VV++ + I G   +G    +L+L  +M S G+ PN  T   
Sbjct: 252 KLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSS 311

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV--VDMLGRTGRLDEAYKLAKSIQ 394
           VL AC+ +G  + G Q    M +    + D   +  V  VDM  + G LD+A K+     
Sbjct: 312 VLKACAGAGAFNLGRQIHGFMVKA---VADFDEFVAVGLVDMYAKHGFLDDARKV---FD 365

Query: 395 VDPDGGPLLWGTLLSASRLHGR 416
             P    +LW  L+S     GR
Sbjct: 366 FMPRRDLILWNALISGCSHDGR 387



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 213/421 (50%), Gaps = 12/421 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++++G+  + FT N L++ Y +L   ++A  +F++M   +VVS+ + ++G +  G 
Sbjct: 227 VHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGH 286

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L  +M  + + PN FT ++V+KAC+       G+QIH  +      ++  V   
Sbjct: 287 DHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG 346

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY K   +D AR+VFD M  R+++ W ++I   + + +  E L +F     +  D  
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLD 406

Query: 229 -NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            N+  LASV+ + AS   +   +  H +  + G   +  V + L+D Y KCG ++Y+ KV
Sbjct: 407 VNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKV 466

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F    +  +++ T+M+   ++   G  ++ LF +M+ +G++P+      +L+AC+     
Sbjct: 467 FKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 348 DEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           ++G Q H   + R++    D      +V    + G +++A      +   P+ G + W  
Sbjct: 527 EQGKQVHAHLIKRQF--TSDVFAGNALVYAYAKCGSIEDADMAFSGL---PERGIVSWSA 581

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL---AGEWENVHSLRSEMKR 463
           ++     HG    A++  +++++  + VA  ++TL++  +    AG  ++       MK 
Sbjct: 582 MIGGLAQHGHGKRALDLFHRMLD--EGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKE 639

Query: 464 T 464
           T
Sbjct: 640 T 640



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 139/298 (46%), Gaps = 19/298 (6%)

Query: 12  TLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINC 71
           TLA+   +  +  + CHT+                  VH+   K G LS++  +N LI+ 
Sbjct: 411 TLASVLKSTASSEAICHTR-----------------QVHALAEKIGLLSDSHVINGLIDS 453

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +  +   A ++F E    +++S T++M         + A+ LF +ML   + P+ F  
Sbjct: 454 YWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVL 513

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
           ++++ AC+ L+    GKQ+H H+    F  ++   ++LV  Y KC  ++ A   F  +  
Sbjct: 514 SSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPE 573

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R +VSW+++I   AQ+  G  AL++F          PN   L SV++AC   G +   K 
Sbjct: 574 RGIVSWSAMIGGLAQHGHGKRALDLFHRM-LDEGVAPNHITLTSVLSACNHAGLVDDAKK 632

Query: 252 AHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
               +  + G +  +   + ++D+  + G +  + ++ N +   +       ++GA++
Sbjct: 633 YFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASR 690


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/444 (42%), Positives = 279/444 (62%), Gaps = 4/444 (0%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +LV  ++++  Y    +V  AR +FD    R+  SW+S+I A+A++ +  EALE++RE +
Sbjct: 53  DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             S   P+   L SV++AC+ LG L  G   H  V  +  E +  + +AL+DMYAKCG +
Sbjct: 113 AASII-PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDI 171

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + +VF+R+    V T++SMI+G A +GLG  SL LF++MIS G+KPN VTFVGVL AC
Sbjct: 172 ESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIAC 231

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +H GLV EG ++  SM   +GI P  +HY C+VD+LGR+G ++EA +L +S+  +PD   
Sbjct: 232 THVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPD--T 289

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W  LL A R+H  V+IA EA  +L   +      YV LSN YA A  WE V  +R  +
Sbjct: 290 IIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTI 349

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +R  I + PG S +E  ++ + F +G+ L  R  E+  +L E+  ++K+ GY    TGLV
Sbjct: 350 RRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGY-KPMTGLV 408

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             D++++++E  +  HSE+LA+AF L++ P   TIRI KNLR C DCH   KLIS + +R
Sbjct: 409 LQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDR 468

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
             +VRD NRFHHF  G CSC D+W
Sbjct: 469 KLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 134/256 (52%), Gaps = 21/256 (8%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + +  + N +I+ Y    +  +AR++FD   + +  S++S+++ Y    + + AL L+++
Sbjct: 51  MRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWRE 110

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M    + P+  T  +V+ ACS L  L  G ++H  +E+   + +L + ++L+DMY KC D
Sbjct: 111 MHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGD 170

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           ++ A+RVFD M  ++V +W+S+I+  A +  GHE+L +F +   +   +PN      V+ 
Sbjct: 171 IESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGM-KPNGVTFVGVLI 229

Query: 239 ACASLGRLVSGKV-------AHGV---VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           AC  +G +  GK         HG+   V   GC         +VD+  + G V  + ++ 
Sbjct: 230 ACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC---------MVDLLGRSGHVEEARQLI 280

Query: 289 NRIS-NPSVVTYTSMI 303
             ++  P  + + +++
Sbjct: 281 RSMTFEPDTIIWRALL 296


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/633 (32%), Positives = 341/633 (53%), Gaps = 47/633 (7%)

Query: 12  TLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINC 71
           TL   S+T  N   SC+        ++  + + S   V  E  K+     ++T   +I  
Sbjct: 171 TLLIPSVT--NALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTT--MIAG 226

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           YVR      AR+L D +  P  V++ ++++GY+  G  + A   F++M    +  +E+T+
Sbjct: 227 YVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTY 286

Query: 132 ATVIKACSMLADLI----TGKQIHTHI----ETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
            ++I AC    + +     G+Q+H +I          + L V ++L+  Y K + +  AR
Sbjct: 287 TSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEAR 346

Query: 184 RVFDLMGCRNVVSWTSIIVAH-------------------------------AQNAQGHE 212
           RVFD M  R+++SW +++  +                               AQN  G E
Sbjct: 347 RVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEE 406

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272
            L++F +   +  + P  +  A  I AC+ LG L +G+  H  V+R G +      +AL+
Sbjct: 407 GLKLFNQMKSEGLE-PCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALI 465

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
            MY++CG V  ++ VF  +     V++ +MI   A++G G  +++LF +M+   I P+ +
Sbjct: 466 TMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRI 525

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TF+ +L AC+H+GL+ EG  + D+M  +YGI P   HY  ++D+L R G   +A  + KS
Sbjct: 526 TFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKS 585

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452
           +    + G  +W  LL+  R+HG +++ ++A+++L+E        Y+ LSN YA  G+W+
Sbjct: 586 MPF--EAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWD 643

Query: 453 NVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERG 512
            V  +R  M+  G+ KEPGCSWVE+ +  + F   +A       V + L++L  +MK+ G
Sbjct: 644 EVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLG 703

Query: 513 YVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
           YV   T  V  D+E E +E  +  HSE+LA+ +G++ +P G TIR+ KNLR+C DCH+ F
Sbjct: 704 YV-PDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAF 762

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K IS +VER+ VVRD  RFHHF+NG CSCG++W
Sbjct: 763 KYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 208/499 (41%), Gaps = 120/499 (24%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH+ IL SGF  NTF LN LIN Y +      AR+LFD++ +P++V+ T+L++ Y + G
Sbjct: 26  AVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSG 85

Query: 108 QPQI---------------------------------ALLLFQKMLGNLVWPNEFTFATV 134
             ++                                 AL LF +M      P+ FTF++V
Sbjct: 86  NVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSV 145

Query: 135 IKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCND---------VDGARR 184
           + A S++AD     Q +H  +   G      V ++L+  Y  C           +  AR+
Sbjct: 146 LSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARK 205

Query: 185 VF------------------------DLMGCRNV---------VSWTSIIVAHAQNAQGH 211
           VF                        DL+  R +         V+W ++I  + +     
Sbjct: 206 VFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYE 265

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACAS----LGRLVSGKVAHGVVVRSGCE----F 263
           EA + FR  +     + +++   S+I+AC S    +G    G+  HG ++R+  E    F
Sbjct: 266 EAFDTFRRMHSMG-IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHF 324

Query: 264 NDVVASALVDMYAK--------------------------CGSVNY-----SDKVFNRIS 292
              V +AL+  Y K                           G VN      ++ +F+ + 
Sbjct: 325 VLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMP 384

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             +V+T+T MI G A+ G G   L LFN+M S G++P D  F G + ACS  G +D G Q
Sbjct: 385 ERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG-Q 443

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
            + S   + G          ++ M  R G ++ A  +  ++   P    + W  +++A  
Sbjct: 444 QIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTM---PYVDSVSWNAMIAALA 500

Query: 413 LHGRVDIAVEASNQLIESN 431
            HG    A+E   Q+++ +
Sbjct: 501 QHGHGVKAIELFEQMMKED 519



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 77/273 (28%)

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD----------------- 187
           I  + +H HI T GF+ N  + + L+++Y K +++  AR++FD                 
Sbjct: 22  IIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAY 81

Query: 188 ----------------LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
                            +  R+ VS+ ++I A++    GH AL +F +   +    P+  
Sbjct: 82  SSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMK-RYGFLPDPF 140

Query: 232 MLASVINACASLG-RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS---------V 281
             +SV++A + +       ++ H  V++ G      V +AL+  Y  C S         +
Sbjct: 141 TFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLM 200

Query: 282 NYSDKVF-----NRISNPSVVT----------------------------YTSMIVGAAK 308
             + KVF     N+I  PS  T                            + +MI G  +
Sbjct: 201 ASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVR 260

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            GL   + D F  M S GI+ ++ T+  ++ AC
Sbjct: 261 RGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC 293



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 11/199 (5%)

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
           +  +  H  ++ SG + N  + + L+++Y K  ++ Y+ K+F++I  P +V  T+++   
Sbjct: 22  IIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAY 81

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           +  G  + +  LFN      I+ + V++  ++ A SH       +     M ++YG +PD
Sbjct: 82  SSSGNVKLAQQLFNA-TPLTIR-DTVSYNAMITAYSHGNDGHAALNLFVQM-KRYGFLPD 138

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV-EASN 425
              ++ V+  L      +   ++     +         GTLL  S  +  +   V  AS+
Sbjct: 139 PFTFSSVLSALSLIADEERHCQMLHCEVIK-------LGTLLIPSVTNALLSCYVCCASS 191

Query: 426 QLIESNQQVANAYVTLSNT 444
            L++S+Q +A+A      T
Sbjct: 192 PLVKSSQLMASARKVFDET 210


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/525 (38%), Positives = 312/525 (59%), Gaps = 15/525 (2%)

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN----LVWPNEFTFATVIKACSMLADL 144
           L P   S      GY+       +L LF+ M+ +    +V  +E        A + + D 
Sbjct: 157 LTPTPSSSPLWHFGYVRNNLVYHSLELFRAMIASDSASVV--DEAAALVAFSASARVPDR 214

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGK--CNDVDGARRVFDLMGCRNVVSWTSIIV 202
                +H  I   GF+ N  V ++++D Y K    D++ AR+VFD M  R+VVSW S+I 
Sbjct: 215 GVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIA 273

Query: 203 AHAQNAQGHEALEMF-REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
            +AQN    EA+ ++ +  N     + N   L++V+ ACA  G + +GK  H  VVR G 
Sbjct: 274 LYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGL 333

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           E N  V +++VDMY+KCG V  + + F +I   +++++++MI G   +G G+ +L++F E
Sbjct: 334 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTE 393

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M   G++PN +TF+ VL ACSH+GL+DEG    ++M +++GI    +HY C+VD+LGR G
Sbjct: 394 MKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAG 453

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            LDEAY L K ++V PD    +WG LLSA R+H  V++A  +  +L E +   +  YV L
Sbjct: 454 CLDEAYSLIKEMKVKPDAA--IWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLL 511

Query: 442 SNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLL 501
           SN YA A  W++V  +R  +K   I K PG S  E++ + Y FY G+    +  E+ S L
Sbjct: 512 SNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYL 571

Query: 502 RELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI-SIPKGITIRIMK 560
            +L  +M+E GYV   TG V  D+++E +E  + +HSE+LA+AF L+ S+P+ + I I+K
Sbjct: 572 EKLLERMQEAGYV-PNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSV-IHIIK 629

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH   K I+ I ER+ ++RD+ RFHHF++G CSC D+W
Sbjct: 630 NLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 7/241 (2%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVR--LKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           AS+H+ I K GF  N   +N +++ Y +   +  +VAR++FD M E +VVS+ S++A Y 
Sbjct: 218 ASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYA 276

Query: 105 NMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
             G    A+ L+ KML  G  +  N    + V+ AC+    + TGK+IH  +   G + N
Sbjct: 277 QNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEEN 336

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + V +S+VDMY KC  V+ A R F  +  +N++SW+++I  +  + +G EALE+F E   
Sbjct: 337 VYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMK- 395

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSV 281
           +S  RPN     SV+ AC+  G L  G+  +  + +  G E        +VD+  + G +
Sbjct: 396 RSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCL 455

Query: 282 N 282
           +
Sbjct: 456 D 456



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C H  ++ +   +H+++++ G   N +    +++ Y +  + ++A + F ++ E N+
Sbjct: 309 LLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 368

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+++++ GY   G+ Q AL +F +M  + + PN  TF +V+ ACS    L  G+  +  
Sbjct: 369 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 428

Query: 154 I-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
           + + FG +  +     +VD+ G+   +D A  +   M  + +   W +++ A
Sbjct: 429 MKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 480


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 340/610 (55%), Gaps = 19/610 (3%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKA-HFIQQLQECKHL---ISLASVHSEILKSGF 58
           + L    +FT  + SL R   RS     A  F   L+ C  L   +S   +H  +++ G 
Sbjct: 23  RELAYQSLFT-ESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGC 81

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV--VSYTSLMAGYINMGQPQIALLLF 116
            +  F L  LI+ Y +    + AR++F+E    +   V Y +L++GY    +   A  +F
Sbjct: 82  EAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMF 141

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
           ++M    V  +  T   ++  C++   L  G+ +H      G    + V +S + MY KC
Sbjct: 142 RRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKC 201

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             V+  RR+FD M  + +++W ++I  ++QN   ++ LE+F +    S   P+   L SV
Sbjct: 202 GSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMK-SSGVCPDPFTLVSV 260

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           +++CA LG    G+    +V  +G   N  +++AL+ MYA+CG++  +  VF+ +   S+
Sbjct: 261 LSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSL 320

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++T+MI     +G+G   L LF++MI RGI+P+   FV VL ACSHSGL D+G++   +
Sbjct: 321 VSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRA 380

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M R+Y + P  +HY+C+VD+LGR GRLDEA +   S+ V+PDG   +WG LL A ++H  
Sbjct: 381 MKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGA--VWGALLGACKIHKN 438

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           VD+A  A  ++IE        YV +SN Y+ +   E +  +R  M+     K+PG S+VE
Sbjct: 439 VDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 498

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKE-RGYVGGKTGLVFVDVEDEAREEIVG 535
            + + + F AG+   E+  EV  +L ELE  + E  G +    G    +V    RE    
Sbjct: 499 HKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRG---EEVSSTTRE---- 551

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595
            HSERLA+AFG+++   G  I ++KNLR+C DCH   KL+S IV+R FVVRD +RFH+F+
Sbjct: 552 -HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFK 610

Query: 596 NGSCSCGDFW 605
           +G CSC D+W
Sbjct: 611 DGVCSCKDYW 620


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/591 (35%), Positives = 335/591 (56%), Gaps = 26/591 (4%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L  C  +  LA   ++H  IL S    +    + L+N Y++  +   AR++F+ M 
Sbjct: 134 FACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 193

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGK 148
             NV SYT++++ Y+  G+   AL LF +M     + PN +TFAT++ A   L +L  G+
Sbjct: 194 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 253

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
           ++H H+ + GF  N+VV ++LV MYGKC     AR+VFD M  RNV+SWTS+I A+AQ+ 
Sbjct: 254 KVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHG 313

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
              EAL +F+  + +    P+    +S +NACA LG L  G+  H  VV +    +  + 
Sbjct: 314 NPQEALNLFKRMDVE----PSGVSFSSALNACALLGALDEGREIHHRVVEANLA-SPQME 368

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++L+ MYA+CGS++ + +VFNR+      +  +MI    ++G  + +L ++ +M   GI 
Sbjct: 369 TSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIP 428

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
            + +TFV VL ACSH+ LV +    L S+   +G++P  +HY C+VD+LGR+GRL +A +
Sbjct: 429 ADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEE 488

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           L +++    D   + W TLLS  + HG +D    A+ ++ E        YV LSN YA A
Sbjct: 489 LVETMPYQADA--VAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAA 546

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG-------SEVLSLL 501
             +++   +R EM+  G+ +    S++EI ++ + F +G    ++          V SLL
Sbjct: 547 KRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLL 606

Query: 502 RELERKMKERGYVGGKTGLVFVDVE----DEAREEIVGLHSERLALAFGLISIP---KGI 554
            EL   MK+ GYV   T  V+++ +    +E ++  +  HSERLA+A+GLI+        
Sbjct: 607 VELLEPMKQAGYV-PDTREVYLEQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSR 665

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R++ + R+C  CH   KL+SDI E+   VRD +RFHHF  G+CSCGD W
Sbjct: 666 PLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 197/356 (55%), Gaps = 11/356 (3%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +Q L+E + L      H  ++ +GF ++      L+  Y +      A+++F+ M   ++
Sbjct: 43  LQALEEGRRL------HEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDL 96

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            +++S++A Y   G+ ++A++L+++M+   V PN  TFA  +  C+ +A L  G+ IH  
Sbjct: 97  FAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQR 156

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I       + V+  SL++MY KC+++  AR+VF+ M  RNV S+T++I A+ Q  +  EA
Sbjct: 157 ILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEA 216

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE+F   +      PN +  A+++ A   LG L  G+  H  +   G + N VV +ALV 
Sbjct: 217 LELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVT 276

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCGS   + KVF+ ++  +V+++TSMI   A++G  + +L+LF  M    ++P+ V+
Sbjct: 277 MYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVS 333

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           F   L+AC+  G +DEG +    +       P  +  T ++ M  R G LD+A ++
Sbjct: 334 FSSALNACALLGALDEGREIHHRVVEANLASPQME--TSLLSMYARCGSLDDARRV 387



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 197/395 (49%), Gaps = 34/395 (8%)

Query: 99  LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158
           ++A  +  G+P  AL L+ +M    +  ++F   +++ AC+ L  L  G+++H H+   G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F+ ++ + ++L+ MY KC  +D A+RVF+ M  +++ +W+SII A+A+  +G  A+ ++R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
               +  + PN    A  +  CAS+  L  G+  H  ++ S    +DV+  +L++MY KC
Sbjct: 121 RMIAEGVE-PNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 179

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGV 337
             +  + KVF  +   +V +YT+MI    + G    +L+LF+ M     I+PN  TF  +
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 338 LHACSHSGLVDEGIQ---HLDS---------------MYRKYGIIPDAKH---------- 369
           L A    G +++G +   HL S               MY K G   +A+           
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 370 --YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
             +T ++    + G   EA  L K + V+P G  + + + L+A  L G +D   E  +++
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFKRMDVEPSG--VSFSSALNACALLGALDEGREIHHRV 357

Query: 428 IESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +E+N        +L + YA  G  ++   + + MK
Sbjct: 358 VEANLASPQMETSLLSMYARCGSLDDARRVFNRMK 392


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 204/562 (36%), Positives = 327/562 (58%), Gaps = 34/562 (6%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           +NT + N L++ YV+      AR++FD+M E NVVS+T+++ GY+  G  + A LLF +M
Sbjct: 23  TNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM 82

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCN 177
                 P       V+    ML  LI   ++    + F      ++V  ++++D  G C+
Sbjct: 83  ------PER----NVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMID--GLCS 130

Query: 178 D--VDGARRVFDLMGCRNVVSWTSIIVAHAQNA-----------QGHEALEMFREFNYQS 224
           +  +  AR +FD M  RNVV+WTS+I     +            +G E LE    F+   
Sbjct: 131 EGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE-LEALALFSLMQ 189

Query: 225 RD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           R+  RP+   + SV++ C SL  L  G+  H  +VRS  + +  V+S L+ MY KCG + 
Sbjct: 190 REGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLV 249

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + +VF+R S+  +V + S+I G A++G G  +L++F++M S  I P+++TF+GVL ACS
Sbjct: 250 TAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACS 309

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           ++G V EG++  +SM  KY + P  +HY C+VD+LGR G+L+EA  L +++ V+ D   +
Sbjct: 310 YTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADA--I 367

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LL A R H  +D+A  A+ +L++     A  Y+ LSN Y+    W++V  LR  M+
Sbjct: 368 VWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMR 427

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE-VLSLLRELERKMKERGYVGGKTGLV 521
              + K PGCSW+E+  + + F  G +      E +L  L +L   ++E GY    +  V
Sbjct: 428 AKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGS-FV 486

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             DV++E +   +  HSE+LA+A+GL+ +P+G+ IR+MKNLR+C D H   KLI+ +  R
Sbjct: 487 MHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGR 546

Query: 582 DFVVRDVNRFHHFRNGSCSCGD 603
           + ++RD NRFHHF++G CSC D
Sbjct: 547 EIILRDTNRFHHFKDGLCSCSD 568



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCY 72
           S + R+  R S  +    I  L  C  L SL     VHS++++S F  + +  + LI  Y
Sbjct: 186 SLMQREGVRPSFPS---VISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMY 242

Query: 73  VRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132
           ++      A+++FD     ++V + S++AGY   G  + AL +F  M  + + P+E TF 
Sbjct: 243 IKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFI 302

Query: 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS----LVDMYGKCNDVDGARRVFDL 188
            V+ ACS    +  G +I    E+   +Y +   +     +VD+ G+   ++ A  + + 
Sbjct: 303 GVLSACSYTGKVKEGLEI---FESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIEN 359

Query: 189 MGCR-NVVSWTSIIVA 203
           M    + + W +++ A
Sbjct: 360 MPVEADAIVWGALLGA 375



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 138/347 (39%), Gaps = 69/347 (19%)

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
           MAGY    +P+ A  LF KM                                        
Sbjct: 1   MAGYFQNKRPREARKLFDKMP--------------------------------------- 21

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           + N +  + LV  Y +   +  AR+VFD M  RNVVSWT++I  + Q     EA  +F  
Sbjct: 22  ETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLF-- 79

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASA-LVDMYAK 277
             ++  +R       +V++    LG L+  G+V     +       DVVAS  ++D    
Sbjct: 80  --WRMPER-------NVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCS 130

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAA-------------KYGLGRFSLDLFNEMIS 324
            G +  + ++F+ +   +VV +TSMI G               + G    +L LF+ M  
Sbjct: 131 EGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQR 190

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G++P+  + + VL  C     +D G Q    + R    I D    + ++ M  + G L 
Sbjct: 191 EGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI-DIYVSSVLITMYIKCGDLV 249

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            A ++            ++W ++++    HG  + A+E  + +  S+
Sbjct: 250 TAKRVFDRFS---SKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSS 293


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 316/556 (56%), Gaps = 4/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H   +K+GF    +  N ++  Y +    + A ++F+ +   +  ++ S++ GY++ GQ 
Sbjct: 131 HGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQL 190

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             +L + + M G     +  ++  V+  C+ + D + G Q+H        + N+ V S+L
Sbjct: 191 DGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSAL 250

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           VDMYGKC+ V  A R F+++  +NVVSWT+++ A+ QN    +AL++F +   +   +PN
Sbjct: 251 VDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGV-QPN 309

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +   A  +N+CA L  L +G      V+++G   + +V++AL++MY+K GS+  + +VF 
Sbjct: 310 EFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFI 369

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +    VV++  +I G A +GL R  ++ F+ M+S  + P+ VTFVGVL AC+  GLVDE
Sbjct: 370 SMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDE 429

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
              +L++M ++ GI P  +HYTC+V +L R GRLDEA +   +  +  D   + W +LL+
Sbjct: 430 AFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTD--VVAWRSLLN 487

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           + +++    +    + Q+++        YV LSN YA A  W+ V  +R  M+   + K 
Sbjct: 488 SCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKS 547

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG SW+ +    + F +   +  +  ++   L EL  ++K  GYV     +V  D++DE 
Sbjct: 548 PGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYV-PNFAVVLHDIDDER 606

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +EE +  HSE+LALAFGLI  PKG TI IMKNLR+C DCH   KLIS +  R  VVRD  
Sbjct: 607 KEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAV 666

Query: 590 RFHHFRNGSCSCGDFW 605
           RFH    G CSC D+W
Sbjct: 667 RFHCIEGGICSCNDYW 682



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 197/410 (48%), Gaps = 16/410 (3%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N+LI+ Y +  +  +AR +FD M   N VS   LM+GY + G+ + +L L + +   +  
Sbjct: 49  NNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQLLRVVDFGM-- 106

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
            NE+  +  + A + +     G+Q H +    GF     V ++++ MY +C  ++ A +V
Sbjct: 107 -NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKV 165

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ +   +  ++ S+I  +    Q   +L + R    ++ ++ +     +V+  CAS+  
Sbjct: 166 FESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEA-EKWDYVSYVAVLGHCASMKD 224

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
            V G   H   ++   E N  V SALVDMY KC  V+ +++ F  +   +VV++T+++  
Sbjct: 225 SVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTA 284

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
             +  L   +L LF +M   G++PN+ T+   L++C+    +  G   L +   K G   
Sbjct: 285 YTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTG-NALGACVMKTGHWD 343

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
                  +++M  ++G +++A+++  S+   P    + W  +++    HG     +EA +
Sbjct: 344 HLLVSNALMNMYSKSGSIEDAHRVFISM---PLRDVVSWNLIITGYAHHGLAREGMEAFH 400

Query: 426 QLIESNQQVANAYVTLSNTYALAGEW----ENVHSLRSEMKRTGIHKEPG 471
            ++ +   V  +YVT     +   +     E  + L + MK  GI   PG
Sbjct: 401 SMLSA--AVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGI--TPG 446



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 1/198 (0%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
           A VH++ LK     N +  + L++ Y +      A + F+ + E NVVS+T++M  Y   
Sbjct: 229 AQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQN 288

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
              + AL LF  M    V PNEFT+A  + +C+ LA L TG  +   +   G   +L+V 
Sbjct: 289 ELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVS 348

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           ++L++MY K   ++ A RVF  M  R+VVSW  II  +A +    E +E F      +  
Sbjct: 349 NALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSM-LSAAV 407

Query: 227 RPNQHMLASVINACASLG 244
            P+      V++ACA LG
Sbjct: 408 IPSYVTFVGVLSACAQLG 425



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 11/269 (4%)

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
           DL  GK +H  + T    +++V+ ++L+  Y KC  V  AR VFD M  RN VS   ++ 
Sbjct: 26  DLSKGKALHARLITAA-HFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMS 84

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
            +A + +  E+L++ R  ++      N+++L++ ++A A++     G+  HG  V++G  
Sbjct: 85  GYASSGRHKESLQLLRVVDFGM----NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFA 140

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
               V +A++ MY +C  +  + KVF  +S      + SMI G    G    SL +   M
Sbjct: 141 EQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNM 200

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
                K + V++V VL  C+       G Q H  ++ ++  +  +    + +VDM G+  
Sbjct: 201 TGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLEL--NVYVGSALVDMYGKC- 257

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
             D  +   ++ +V P+   + W  +++A
Sbjct: 258 --DHVHDANRAFEVLPEKNVVSWTAVMTA 284


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 200/583 (34%), Positives = 331/583 (56%), Gaps = 17/583 (2%)

Query: 30  KAHFIQQLQECKHL-----ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           +A ++  L+ C HL          +H   +  GF ++    N LI+ Y +    + A  +
Sbjct: 29  QATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGV 88

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FD+M   N++SYTS++  Y +  +   A  L++KML   + P+ + +A  +  C  + + 
Sbjct: 89  FDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIRE- 147

Query: 145 ITGKQIHTHIETFGFQYNLVVCS-SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVA 203
             G+ IH  ++    +    VCS +LV MYG+   +  A+ VFD +  +++ S+ ++I  
Sbjct: 148 --GEAIH--VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAV 203

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
            A+   G +A+ ++ E   ++ + PN     SV++AC+ LG L  GK  H  V + G + 
Sbjct: 204 FAKYDDGSKAISLYIEMEGRNLE-PNLWTYTSVLDACSKLGALTEGKEIHKKV-KGGDQP 261

Query: 264 NDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            DV   +ALV+MYAKCGS + +  VFN     +V T+TS++   ++ G  ++ L+ +  M
Sbjct: 262 TDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRM 321

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G+ P+DVTF  + +ACSHSGL DEG+ +  +M   + I+P   HYTC++D+LGR GR
Sbjct: 322 NCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGR 381

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           L EA +L +++   PD   + W  LLSA +++G + I   A  ++ E N   +  Y+ + 
Sbjct: 382 LREAEELVRTMPYSPD--VVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMG 439

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N YA AG+W +V  ++  +K+ G+ K PG S +E + + + F  G+       E+ + L+
Sbjct: 440 NMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQ 499

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNL 562
           E+  ++   GY    T  V VDV +E + E++  HSER+AL  GL++   G T+ I+KNL
Sbjct: 500 EVHEQLSHAGY-EPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKNL 558

Query: 563 RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+C DCH  FKL+S ++ R  +VRD +RFH F+ GSCSCGD+W
Sbjct: 559 RICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 601



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 166/331 (50%), Gaps = 13/331 (3%)

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD--LITGKQIHTHIETF 157
           M  Y      + AL LF+K +   +  N+ T+ TV+K+C+ L D  L  GK+IH H    
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           GF  +LVV +SL+ MY KC     A  VFD M  +N++S+TS+I A+   A+  EA E++
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           ++   +    P+ +  A+ +  C ++     G+  H V + +      V ++ALV MY +
Sbjct: 121 KKMLSEGI-MPDIYAYAAALAVCPTIRE---GEAIH-VKLGNHERRTPVCSNALVGMYGR 175

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
            G +  +  VF+ I    + +Y +MI   AKY  G  ++ L+ EM  R ++PN  T+  V
Sbjct: 176 FGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSV 235

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
           L ACS  G + EG +    +  K G  P D  + T +V+M  + G   EA  +     + 
Sbjct: 236 LDACSKLGALTEGKEIHKKV--KGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLK 293

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                  W +L+SA    G+    +EA  ++
Sbjct: 294 ---NVFTWTSLMSAYSQPGQSQYRLEAYQRM 321


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/546 (35%), Positives = 322/546 (58%), Gaps = 14/546 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +   + ++I  Y ++ +   AR+LFDEM   NV ++T++++GY   G+  +A  LF+ M 
Sbjct: 175 DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP 234

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                 NE ++  ++   +    +   K+     E    ++ +V C+ ++  +G   ++ 
Sbjct: 235 ER----NEVSWTAMLMGYTQSGRM---KEAFELFEAMPVKW-IVACNEMILQFGLAGEMH 286

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            AR +F+ M  R+  +W ++I    +     EAL +F     +        M+ SV++ C
Sbjct: 287 RARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMI-SVLSVC 345

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
           ASL  L  G+  H  +VRS  + +  VAS L+ MY KCG +  +  +FNR     VV + 
Sbjct: 346 ASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWN 405

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           SMI G +++GLG  +L++F++M S G++P++VTF+GVL ACS+SG V EG +  ++M   
Sbjct: 406 SMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCT 465

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           Y + P  +HY C+VD+LGR GR+DEA +L + + ++PD   ++WG LL A R H ++D+A
Sbjct: 466 YQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDA--IVWGALLGACRNHMKLDLA 523

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
             A  +L +   + A  YV LS+ YA  G W +V  LR ++ R  I K PGCSW+E+  +
Sbjct: 524 EVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVEKK 582

Query: 481 TYAFYAGNALFERGSEVLS-LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
            + F  G++       +++ +L +L   ++E GY    +  V  DV++E +   +G HSE
Sbjct: 583 VHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGS-FVLHDVDEEEKTHSLGYHSE 641

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           RLA+A+GL+ +P+G+ IR+MKNLR+C DCH   KLI+ +  R+ ++RD NRFHHF++GSC
Sbjct: 642 RLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSC 701

Query: 600 SCGDFW 605
           SC DFW
Sbjct: 702 SCKDFW 707



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 23/295 (7%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           NT + N +I+ YV+      AR++FD M E NVVS+TS++ GY+  G  + A  LF +M 
Sbjct: 82  NTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM- 140

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCND 178
                P       V+    M+  L+   +I    + F    + ++VV ++++  Y +   
Sbjct: 141 -----PRR----NVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGR 191

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           +D AR +FD M  RNV +WT+++  +A+N +   A ++F E   +  +     ML     
Sbjct: 192 LDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLF-EVMPERNEVSWTAML----- 245

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
               +G   SG++     +        +VA + ++  +   G ++ +  +F  +      
Sbjct: 246 ----MGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEG 301

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
           T+ +MI    + GL   +L LF  M   G+  N  + + VL  C+    +D G Q
Sbjct: 302 TWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQ 356



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 54/295 (18%)

Query: 69  INCYVRLKKTQVARQLFDEMLEPN--VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
           I+ Y R+     AR++FD    P   + S+ ++++ Y    +P+ ALLLF +M       
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP------ 79

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
                                            Q N V  + ++  Y K   V  AR+VF
Sbjct: 80  ---------------------------------QRNTVSFNGMISGYVKNGMVADARKVF 106

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D+M  RNVVSWTS++  + Q     EA ++F E       R N      +I       R+
Sbjct: 107 DVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM-----PRRNVVSWTVMIGGLLKESRI 161

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
              K    ++     E + VV + ++  Y + G ++ + ++F+ +   +V T+T+M+ G 
Sbjct: 162 DDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGY 217

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           AK G    +  LF  M  R    N+V++  +L   + SG + E  +  ++M  K+
Sbjct: 218 AKNGRVDVARKLFEVMPER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKW 268



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 60/271 (22%)

Query: 167 SSLVDMYGKCNDVDGARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           +S +  YG+  D+  AR+VFD   +  R + SW +++ A+ ++ +  +AL +F       
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLF------- 75

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
            D+  Q                           R+   FN +++      Y K G V  +
Sbjct: 76  -DQMPQ---------------------------RNTVSFNGMISG-----YVKNGMVADA 102

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            KVF+ +   +VV++TSM+ G  + G+   +  LF EM  R +    V   G+L      
Sbjct: 103 RKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKE---- 158

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG---RTGRLDEAYKLAKSIQVDPDGGP 401
                    +D   + + +IP+ K    V +M+G   + GRLDEA +L   ++V      
Sbjct: 159 -------SRIDDAKKLFDMIPE-KDVVVVTNMIGGYCQVGRLDEARELFDEMKVR---NV 207

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
             W T++S    +GRVD+A +    + E N+
Sbjct: 208 FTWTTMVSGYAKNGRVDVARKLFEVMPERNE 238



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M K   R  +   A     R  +          I  L  C  L SL     VH+ +++S 
Sbjct: 306 MIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSE 365

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
           F  + +  + LI  YV+      A+ +F+  L  +VV + S++ GY   G  + AL +F 
Sbjct: 366 FDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFH 425

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKC 176
            M  + V P+E TF  V+ ACS    +  G +I   ++ T+  +  +   + +VD+ G+ 
Sbjct: 426 DMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRA 485

Query: 177 NDVDGARRVFDLMGCR-NVVSWTSIIVA 203
             VD A  + + M    + + W +++ A
Sbjct: 486 GRVDEAMELVEKMPMEPDAIVWGALLGA 513



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%)

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           Q  +   +++V  Y + +    A  +FD M  RN VS+  +I  + +N    +A ++F  
Sbjct: 49  QRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDV 108

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF------NDVVASALVD 273
                   P ++++        S   +V G V  G+V  +   F      N V  + ++ 
Sbjct: 109 M-------PERNVV--------SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIG 153

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
              K   ++ + K+F+ I    VV  T+MI G  + G    + +LF+EM  R    N  T
Sbjct: 154 GLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR----NVFT 209

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRK-YGIIPDAKHYTCVVDMLGRT--GRLDEAYKLA 390
           +  ++   + +G VD        + RK + ++P+    +    ++G T  GR+ EA++L 
Sbjct: 210 WTTMVSGYAKNGRVD--------VARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELF 261

Query: 391 KSIQV 395
           +++ V
Sbjct: 262 EAMPV 266


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 327/568 (57%), Gaps = 17/568 (2%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY--- 103
           A+VH  ++K+GF S+ F  + ++  Y +      A  LF  +L+PNVV + +++AG    
Sbjct: 237 AAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRD 296

Query: 104 ---INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
              +     + AL L+ ++    + P EFTF++VI+AC++  D+  GKQIH  +    FQ
Sbjct: 297 EAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQ 356

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +  + S+L+D+Y     ++   R F  +  ++VV+WT++I    QN     AL +F E 
Sbjct: 357 GDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHEL 416

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
              +  +P+   ++SV+NACASL    +G+       +SG      + ++ + MYA+ G 
Sbjct: 417 -LGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGD 475

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           V+ + + F  + +  +V+++++I   A++G  R +L  FNEM+   + PN++TF+GVL A
Sbjct: 476 VHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTA 535

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK-SIQVDPDG 399
           CSH GLVDEG+++ ++M  +Y + P  KH TCVVD+LGR GRL +A    + SI  D   
Sbjct: 536 CSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDE-- 593

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
            P++W +LL++ R+H  ++     +++++E     + +YV L N Y  AGE      +R 
Sbjct: 594 -PVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRD 652

Query: 460 EMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTG 519
            MK  G+ KEPG SW+E+R   ++F AG+      + + S L E+  K+ +       + 
Sbjct: 653 VMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKLTATDASS- 711

Query: 520 LVFVDVEDEAREE--IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
                 +D  R E   +  HSE+LA+A GLI +P+   IR+MKNLR+CRDCH   KLIS 
Sbjct: 712 ---TKSDDTIRNEQSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKLISK 768

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             +R+ V+RD  RFHHFR+GSCSC D+W
Sbjct: 769 SEKREIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 197/388 (50%), Gaps = 16/388 (4%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           A+++  L+ C      A+VH+ I+++    + F  N L+  Y RL     AR+L DEM  
Sbjct: 18  AYYLHHLRSCSAPRHAAAVHAHIVRAHPSPSLFLRNTLLAAYCRLGGH--ARRLLDEMPR 75

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQ 149
            N VS+  L+  Y   GQP+ +L  F +   +  V  + FT+A  + ACS    L  GK 
Sbjct: 76  TNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKA 135

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H      G    + V +SLV MY +C D+  AR+VFD    R+ VSW +++  + +   
Sbjct: 136 VHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGA 195

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA--HGVVVRSGCEFNDVV 267
             + L +F     +S    N   L SVI  CA     V    A  HG VV++G + +  +
Sbjct: 196 QDDMLRVFAMMR-RSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFL 254

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG------AAKYGLGRFSLDLFNE 321
           ASA+V MYAK G+++ +  +F  + +P+VV + +MI G      A    + R +L L++E
Sbjct: 255 ASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSE 314

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           + SRG++P + TF  V+ AC+ +G ++ G Q +     K+    D    + ++D+   +G
Sbjct: 315 VQSRGMEPTEFTFSSVIRACNLAGDIEFGKQ-IHGQVLKHCFQGDDFIGSALIDLYLNSG 373

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
            +++ ++   S+   P    + W  ++S
Sbjct: 374 CMEDGFRCFTSV---PKQDVVTWTAMIS 398


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 338/582 (58%), Gaps = 13/582 (2%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T++ +   ++ C +L  LA    +HS +LK GF      +  L + Y +  +   A  +F
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF 360

Query: 86  DEML-EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
                  NVVS+T++++G I  G   +A++LF +M  + V PNEFT++ ++KA    +  
Sbjct: 361 SMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA----SLS 416

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           I   QIH  +    +Q+   V ++L+  Y K    + A  +F ++  ++VV+W++++  H
Sbjct: 417 ILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCH 476

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV-SGKVAHGVVVRSGCEF 263
           AQ      A  +F +   Q   +PN+  ++SVI+ACA     V  G+  H + ++     
Sbjct: 477 AQAGDCEGATYLFNKMAIQGI-KPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
              V+SALV MY++ G+++ +  VF R ++  +V++ SMI G A++G    +++ F +M 
Sbjct: 536 AICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           + GI+ + VTF+ V+  C+H+GLV EG Q+ DSM R + I P  +HY C+VD+  R G+L
Sbjct: 596 ASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           DE   L + +      G ++W TLL A R+H  V++   ++++L+      ++ YV LSN
Sbjct: 656 DETMSLIRDMPFP--AGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSN 713

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA AG+W+    +R  M    + KE GCSW++I+++ ++F A +       ++   L+ 
Sbjct: 714 IYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKV 773

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +  ++K+ GY    T  V  D+ ++ +E ++  HSERLALAFGLI+ P G  ++I+KNLR
Sbjct: 774 IITRLKQDGY-SPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLR 832

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH V K++S I +R+ ++RD +RFHHF  G+CSCGDFW
Sbjct: 833 VCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 200/391 (51%), Gaps = 17/391 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH++ +K G  S+ F  N L+N Y +    + A+ +F+ M   ++VS+ +LMAG + + +
Sbjct: 223 VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG-LQLNE 281

Query: 109 PQI-ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            ++ AL LF +    +    + T+ATVIK C+ L  L   +Q+H+ +   GF     V +
Sbjct: 282 CELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMT 341

Query: 168 SLVDMYGKCNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +L D Y KC ++  A  +F +  G RNVVSWT+II    QN     A+ +F     + R 
Sbjct: 342 ALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMR-EDRV 400

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+   ++++ A  S    +     H  V+++  +    V +AL+  Y+K GS   +  
Sbjct: 401 MPNEFTYSAMLKASLS----ILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALS 456

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-HSG 345
           +F  I    VV +++M+   A+ G    +  LFN+M  +GIKPN+ T   V+ AC+  S 
Sbjct: 457 IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSA 516

Query: 346 LVDEGIQ-HLDSM-YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            VD+G Q H  S+ YR +  I  +   + +V M  R G +D A ++    Q D D   + 
Sbjct: 517 GVDQGRQFHAISIKYRYHDAICVS---SALVSMYSRKGNIDSA-QIVFERQTDRD--LVS 570

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           W +++S    HG    A+E   Q+  S  Q+
Sbjct: 571 WNSMISGYAQHGYSMKAIETFRQMEASGIQM 601



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 165/315 (52%), Gaps = 16/315 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y++        ++F+ M + NVV++TSL+ G  +       + LF +M    +WPN
Sbjct: 141 LVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPN 200

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
            FTFA+V+ A +    L  G+++H     FG + ++ VC+SL++MY KC  V+ A+ VF+
Sbjct: 201 PFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFN 260

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R++VSW +++     N    EAL++F E +  +  +  Q   A+VI  CA+L +L 
Sbjct: 261 WMETRDMVSWNTLMAGLQLNECELEALQLFHE-SRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGA 306
             +  H  V++ G      V +AL D Y+KCG +  +  +F+  +   +VV++T++I G 
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-------SHSGLVDEGIQHLD---- 355
            + G    ++ LF+ M    + PN+ T+  +L A         H+ ++    QH+     
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGT 439

Query: 356 ---SMYRKYGIIPDA 367
              + Y K+G   DA
Sbjct: 440 ALLASYSKFGSTEDA 454



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC-SSLVDMYGKCNDVDGARRVFDL 188
           T + V+KAC  + D + G+Q+H      G     V   +SLVDMY KC  V     VF+ 
Sbjct: 101 TLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG 160

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  +NVV+WTS++   A      E + +F     +    PN    ASV++A AS G L  
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGI-WPNPFTFASVLSAVASQGALDL 219

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G+  H   V+ GC  +  V ++L++MYAKCG V  +  VFN +    +V++ +++ G   
Sbjct: 220 GQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQL 279

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
                 +L LF+E  +   K    T+  V+  C++   +    Q L S   K+G      
Sbjct: 280 NECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGN 338

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
             T + D   + G L +A  +            + W  ++S    +G + +AV
Sbjct: 339 VMTALADAYSKCGELADALNIFS--MTTGSRNVVSWTAIISGCIQNGDIPLAV 389



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 26/218 (11%)

Query: 174 GKC-NDVDGARRVFDLMGCRNV-VSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPN 229
           G C  D  GAR   D +  R+  V    ++  +A+       LE+  +F+   R     +
Sbjct: 42  GVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGM---VLEVLDQFSVARRGGVLVD 98

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVF 288
              L+ V+ AC S+   V G+  H + V+ G +  +V A ++LVDMY KCGSV    +VF
Sbjct: 99  SATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVF 158

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             +   +VVT+TS++ G A   +    + LF  M + GI PN  TF  VL A +  G +D
Sbjct: 159 EGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALD 218

Query: 349 EG------------------IQHLDSMYRKYGIIPDAK 368
            G                     L +MY K G++ DAK
Sbjct: 219 LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 316/567 (55%), Gaps = 16/567 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINM 106
           +HS I  SGF S     N ++  Y R    + AR++FD M E   +VVS+  +++ Y++ 
Sbjct: 182 IHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHN 241

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
            + + A+ L+Q+M    + P++ T+ +++ ACS   D+  G+ +H  I     + N++V 
Sbjct: 242 DRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG 298

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF------ 220
           ++LV MY KC     AR VFD M  R+++SWT+II A+ +     EA  +F++       
Sbjct: 299 NALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKN 358

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
               R +P+     +++NACA +  L  GK+        G   +  V +A+V++Y KCG 
Sbjct: 359 GSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGE 418

Query: 281 VNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
           +  + ++F+ + S P V  + +MI   A++G    +L LF  M   G++P+  +FV +L 
Sbjct: 419 IEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILL 478

Query: 340 ACSHSGLVDEGIQHLDSMYRKY-GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
           ACSH+GL D+G  +  SM  +Y  +    +H+ CV D+LGR GRL EA +  + + V PD
Sbjct: 479 ACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPD 538

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
              + W +LL+A R H  +  A E +N+L+    + A  YV LSN YA   +W  V  +R
Sbjct: 539 A--VAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVR 596

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             M   G+ KE G S +EI    + F  G+    R  E+   L +L  +MKE GYV   T
Sbjct: 597 KFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP-DT 655

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
            +V   V+++ +E ++  HSERLA+A GLIS P G  +R+ KNLR+C DCH   KLIS I
Sbjct: 656 KMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKI 715

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
             R  VVRD  RFH F++G CSC D+W
Sbjct: 716 AGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 203/390 (52%), Gaps = 20/390 (5%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           FI  L  C    SL     +H  ++ S    +    N L+N Y +      A+++F +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 90  EP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
              NV+S++ +   +   G    AL  F+ ML   +   +    T++ ACS  A +  G+
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQ 206
            IH+ I   GF+  L+V ++++ MYG+C  V+ AR+VFD M    R+VVSW  ++  +  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N +G +A+++++        RP++    S+++AC+S   +  G+V H  +V    E N +
Sbjct: 241 NDRGKDAIQLYQRMQL----RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVI 296

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI--- 323
           V +ALV MYAKCGS   +  VF+++   S++++T++I    +  L   +  LF +M+   
Sbjct: 297 VGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELE 356

Query: 324 ----SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
               S+ +KP+ + FV +L+AC+    +++G + +       G+  D    T VV++ G+
Sbjct: 357 KNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGK 415

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
            G ++EA ++  ++   PD    LW  +++
Sbjct: 416 CGEIEEARRIFDAVCSRPD--VQLWNAMIA 443



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 188/381 (49%), Gaps = 27/381 (7%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A+  FD + + N+ S+T L+A +   GQ +  L   ++M  + V P+  TF T + +C  
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTS 199
              L  G +IH  +     + +  V ++L++MY KC  +  A+RVF  M   RNV+SW+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +  AHA +    EAL  FR F      +  +  + ++++AC+S   +  G++ H  +  S
Sbjct: 131 MAGAHALHGNVWEALRHFR-FMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALS 189

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP--SVVTYTSMIVGAAKYGLGRFSLD 317
           G E   +VA+A++ MY +CG+V  + KVF+ +      VV++  M+        G+ ++ 
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG----IQHLDSMYRKYGIIPDAKHYTCV 373
           L+  M    ++P+ VT+V +L ACS +  V  G     Q ++    K  I+ +A     +
Sbjct: 250 LYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNA-----L 301

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE---- 429
           V M  + G   EA  +   ++       + W T++SA      V  A     Q++E    
Sbjct: 302 VSMYAKCGSHTEARAVFDKME---QRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKN 358

Query: 430 -SNQQV---ANAYVTLSNTYA 446
            S+Q+V   A A+VT+ N  A
Sbjct: 359 GSSQRVKPDALAFVTILNACA 379



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY  C+    A+  FD +  RN+ SWT ++ A A + Q  E L        Q   RP+  
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMR-QDGVRPDAV 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
              + + +C     L  G   H +VV S  E +  V++AL++MY KCGS++++ +VF ++
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 292 SNPSVVTYTSMIVGA-AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
                V   S++ GA A +G    +L  F  M+  GIK      V +L ACS   LV +G
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            + + S     G   +      V+ M GR G ++EA K+
Sbjct: 180 -RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKV 217



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MYA C S   +   F+ +   ++ ++T ++   A  G  + +L     M   G++P+ VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+  L +C     + +GI+ +  M     +  D K    +++M  + G L  A ++   +
Sbjct: 61  FITALGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 394 QVDPDGGPLLWGTLLSASRLHGRV 417
           +   +   + W  +  A  LHG V
Sbjct: 120 ERTRN--VISWSIMAGAHALHGNV 141


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 201/559 (35%), Positives = 319/559 (57%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLI-NCYVRLKKT-QVARQLFDEMLEPNVVSYTSLMAGYINM 106
           +H+ +LK+G  ++   L  L+ +C      +   AR +FD +  P+  ++ +++  + + 
Sbjct: 7   LHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADS 66

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                  L   KM    V P+ FTF  V+KAC   A L TG  +H+ +   GF  ++ V 
Sbjct: 67  SPSFSLSLF-SKMAMAGVSPDHFTFPFVLKAC---ARLQTGLDLHSLLFKLGFDSDVYVQ 122

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+  YG C  +D A +VF+ M  R++VSW+S+I   A+N  G+EAL +F+        
Sbjct: 123 NGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTV 182

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P++ ++ SV++A + LG L  GK   G + R+G EF   + +ALVDM+++CG +  S +
Sbjct: 183 KPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMR 242

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   +V+T+T++I G A +G    +L +F EM + G +P+ VTF GVL ACSH GL
Sbjct: 243 VFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGL 302

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V EG    +S+  +YG+ P  +HY C+VD+LGR G L+EA K    + + P+   ++W T
Sbjct: 303 VSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS--IIWRT 360

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A   H  +++A +   ++ E +      YV LSN Y   G W     +R+ M+   I
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRI 420

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K+PGCS + +    + F AG+    +   +   L  +   +K  GY    + ++F D+E
Sbjct: 421 SKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLF-DIE 479

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  +G HSE+LA+AF L+      TIR+MKNLR+C DCH   K  SD+ ER+ ++R
Sbjct: 480 EEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIR 539

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF  GSCSC D+W
Sbjct: 540 DRNRFHHFSKGSCSCRDYW 558



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 141/270 (52%), Gaps = 4/270 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L +   +HS + K GF S+ +  N LI+ Y        A ++F+EM E ++VS+
Sbjct: 94  LKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSW 153

Query: 97  TSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           +S++A +   G    AL LFQ+M L   V P+E    +V+ A S+L DL  GK I   I 
Sbjct: 154 SSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFIS 213

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G ++ + + ++LVDM+ +C  ++ + RVFD MG RNV++WT++I   A + +  EAL 
Sbjct: 214 RNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALR 273

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDM 274
           MF E       +P+      V+ AC+  G +  G  V   +    G E        +VD+
Sbjct: 274 MFYEMRNHGF-QPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDL 332

Query: 275 YAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
             + G +N + K  + +   P+ + + +++
Sbjct: 333 LGRAGLLNEACKFVDGMPIRPNSIIWRTLL 362


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 338/582 (58%), Gaps = 13/582 (2%)

Query: 29  TKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           T++ +   ++ C +L  LA    +HS +LK GF      +  L + Y +  +   A  +F
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF 360

Query: 86  DEML-EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
                  NVVS+T++++G I  G   +A++LF +M  + V PNEFT++ ++KA    +  
Sbjct: 361 SMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA----SLS 416

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           I   QIH  +    +Q+   V ++L+  Y K    + A  +F ++  ++VV+W++++  H
Sbjct: 417 ILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCH 476

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV-SGKVAHGVVVRSGCEF 263
           AQ      A  +F +   Q   +PN+  ++SVI+ACA     V  G+  H + ++     
Sbjct: 477 AQAGDCEGATYLFNKMAIQGI-KPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
              V+SALV MY++ G+++ +  VF R ++  +V++ SMI G A++G    +++ F +M 
Sbjct: 536 AICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           + GI+ + VTF+ V+  C+H+GLV EG Q+ DSM R + I P  +HY C+VD+  R G+L
Sbjct: 596 ASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655

Query: 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           DE   L + +      G ++W TLL A R+H  V++   ++++L+      ++ YV LSN
Sbjct: 656 DETMSLIRDMPFP--AGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSN 713

Query: 444 TYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRE 503
            YA AG+W+    +R  M    + KE GCSW++I+++ ++F A +       ++   L+ 
Sbjct: 714 IYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKV 773

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           +  ++K+ GY    T  V  D+ ++ +E ++  HSERLALAFGLI+ P G  ++I+KNLR
Sbjct: 774 IITRLKQDGY-SPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLR 832

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH V K++S I +R+ ++RD +RFHHF  G+CSCGDFW
Sbjct: 833 VCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 200/391 (51%), Gaps = 17/391 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH++ +K G  S+ F  N L+N Y +    + A+ +F+ M   ++VS+ +LMAG + + +
Sbjct: 223 VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG-LQLNE 281

Query: 109 PQI-ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
            ++ AL LF +    +    + T+ATVIK C+ L  L   +Q+H+ +   GF     V +
Sbjct: 282 CELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMT 341

Query: 168 SLVDMYGKCNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +L D Y KC ++  A  +F +  G RNVVSWT+II    QN     A+ +F     + R 
Sbjct: 342 ALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMR-EDRV 400

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+   ++++ A  S    +     H  V+++  +    V +AL+  Y+K GS   +  
Sbjct: 401 MPNEFTYSAMLKASLS----ILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALS 456

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-HSG 345
           +F  I    VV +++M+   A+ G    +  LFN+M  +GIKPN+ T   V+ AC+  S 
Sbjct: 457 IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSA 516

Query: 346 LVDEGIQ-HLDSM-YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            VD+G Q H  S+ YR +  I  +   + +V M  R G +D A ++    Q D D   + 
Sbjct: 517 GVDQGRQFHAISIKYRYHDAICVS---SALVSMYSRKGNIDSA-QIVFERQTDRD--LVS 570

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           W +++S    HG    A+E   Q+  S  Q+
Sbjct: 571 WNSMISGYAQHGYSMKAIETFRQMEASGIQM 601



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 166/315 (52%), Gaps = 16/315 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y++        ++F+ M + NVV++TSL+ G  +       + LF +M    +WPN
Sbjct: 141 LVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPN 200

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
            FTFA+V+ A +    L  G+++H     FG + ++ VC+SL++MY KC  V+ A+ VF+
Sbjct: 201 PFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFN 260

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R++VSW +++     N    EAL++F E +  +  +  Q   A+VI  CA+L +L 
Sbjct: 261 WMETRDMVSWNTLMAGLQLNECELEALQLFHE-SRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGA 306
             +  H  V++ G      V +AL D Y+KCG +  +  +F+  +   +VV++T++I G 
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-------SHSGLVDEGIQHLDSM-- 357
            + G    ++ LF+ M    + PN+ T+  +L A         H+ ++    QH+ S+  
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGT 439

Query: 358 -----YRKYGIIPDA 367
                Y K+G   DA
Sbjct: 440 ALLASYSKFGSTEDA 454



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 3/261 (1%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC-SSLVDMYGKCNDVDGARRVFDL 188
           T + V+KAC  + D + G+Q+H      G     V   +SLVDMY KC  V     VF+ 
Sbjct: 101 TLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG 160

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248
           M  +NVV+WTS++   A      E + +F     +    PN    ASV++A AS G L  
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGI-WPNPFTFASVLSAVASQGALDL 219

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G+  H   V+ GC  +  V ++L++MYAKCG V  +  VFN +    +V++ +++ G   
Sbjct: 220 GQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQL 279

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
                 +L LF+E  +   K    T+  V+  C++   +    Q L S   K+G      
Sbjct: 280 NECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGN 338

Query: 369 HYTCVVDMLGRTGRLDEAYKL 389
             T + D   + G L +A  +
Sbjct: 339 VMTALADAYSKCGELADALNI 359



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 174 GKC-NDVDGARRVFDLMGCRNV-VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           G C  D  GAR   D +  R+  V    ++  +A+     E L+ F     +     +  
Sbjct: 42  GVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQF-SVARRGGVLVDSA 100

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNR 290
            L+ V+ AC S+   V G+  H + V+ G +  +V A ++LVDMY KCGSV    +VF  
Sbjct: 101 TLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG 160

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           +   +VVT+TS++ G A   +    + LF  M + GI PN  TF  VL A +  G +D G
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220

Query: 351 ------------------IQHLDSMYRKYGIIPDAK 368
                                L +MY K G++ DAK
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 197/556 (35%), Positives = 316/556 (56%), Gaps = 4/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H  +LK+GF  + +  N L++ Y +    Q A  +++E+   ++V+Y S+++  +  G  
Sbjct: 156 HGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYL 215

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           +  L + + M+   V  ++ TF      C+ L DL  G  +H  + T   + +  V S++
Sbjct: 216 REGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAI 275

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           ++MYGKC     AR VFD +  RNVV WT+++ +  QN    EAL +F +   Q   + N
Sbjct: 276 INMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKME-QENVKSN 334

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +   A ++NACA L    +G + HG   +SG + + +V +AL++MYAK G +  + KVF+
Sbjct: 335 EFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFS 394

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            + +  ++T+ +MI G + +GLG+ +L +F +M++    PN VTF GVL AC H GLV E
Sbjct: 395 DMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQE 454

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G  +L  + +++G+ P  +HYTC+V +L +TG+L+EA    ++  V  D   + W TLL+
Sbjct: 455 GFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWD--VVAWRTLLN 512

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           A  +H    +    +  ++E +      Y  LSN YA    W+ V  +R  M+   I KE
Sbjct: 513 ACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKE 572

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG SW+EI + T+ F + +       +    ++EL   +K  GY     G V  DVEDE 
Sbjct: 573 PGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYT-PDIGAVLHDVEDEQ 631

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +E  +  HSE+LA+A+GL+ +P   +I ++KNLR+C DCH   +LIS +  R  VVRD N
Sbjct: 632 KEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDAN 691

Query: 590 RFHHFRNGSCSCGDFW 605
           RFHHFR+G CSC D+W
Sbjct: 692 RFHHFRDGRCSCLDYW 707



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 217/445 (48%), Gaps = 26/445 (5%)

Query: 39  ECKHLISLASVHSEILKSGFLS--NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           + K+L    ++HS ++ +   +  +   +N LIN Y ++ +  +A  LFD M E NVVS+
Sbjct: 41  DTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSW 100

Query: 97  TSLMAGYINMGQPQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
           ++LM GY+  G     + L + M+  GN V PNE+  A  I +C     +  G+Q H  +
Sbjct: 101 SALMTGYLLNGFSLKVIRLLKDMISEGN-VSPNEYILAIAISSCCDRGRVEEGRQCHGLL 159

Query: 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214
              GF ++  V ++LV MY KC+ V  A  V++ +   ++V++ SI+ +  +N    E L
Sbjct: 160 LKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGL 219

Query: 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           E+ R    +S  + ++    +  + CASL  L  G   HG ++ S  E +  V+SA+++M
Sbjct: 220 EVLRSMVSESV-KWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINM 278

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCG    +  VF+ + + +VV +T+++    + G    +L+LF++M    +K N+ T+
Sbjct: 279 YGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTY 338

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLA 390
             +L+AC+       G     S+   +      KH+  V    ++M  ++G ++ A K+ 
Sbjct: 339 AVLLNACAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVF 393

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
             +        + W  ++     HG    A+     ++ + +     YVT +   +  G 
Sbjct: 394 SDMM---HRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEH--PNYVTFTGVLSACGH 448

Query: 451 W----ENVHSLRSEMKRTGIHKEPG 471
                E  + L   MK+ G+  +PG
Sbjct: 449 LGLVQEGFYYLHHLMKQFGV--QPG 471



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 16/312 (5%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F+     C  L  L     VH ++L S    + +  + +IN Y +  K+ +AR +FD
Sbjct: 234 KVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFD 293

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            +   NVV +T++MA     G  + AL LF KM    V  NEFT+A ++ AC+ L+    
Sbjct: 294 GLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRN 353

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           G  +H H E  GF+++++V ++L++MY K  D++ A++VF  M  R++++W ++I   + 
Sbjct: 354 GSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSH 413

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFND 265
           +  G +AL +F++    + + PN      V++AC  LG +  G    H ++ + G +   
Sbjct: 414 HGLGKKALLVFQDM-LAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGL 472

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGA---AKYGLGRFSLDLFN 320
              + +V + +K G +N + + F R +     VV + +++        YGLGR+  +   
Sbjct: 473 EHYTCIVSLLSKTGQLNEA-RNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVL 531

Query: 321 EMISRGIKPNDV 332
           EM      PNDV
Sbjct: 532 EM-----DPNDV 538



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 142/268 (52%), Gaps = 9/268 (3%)

Query: 123 LVWPNEFTFAT---VIKACSMLAD---LITGKQIHTH--IETFGFQYNLVVCSSLVDMYG 174
           L+ PN  + ++   +IK   + AD   L  GK IH+H  + +   + +++  +SL++ Y 
Sbjct: 18  LLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYA 77

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           K N V  A  +FD M  RNVVSW++++  +  N    + + + ++   +    PN+++LA
Sbjct: 78  KVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILA 137

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294
             I++C   GR+  G+  HG+++++G  F++ V +ALV MY+KC  V  +  V+N +   
Sbjct: 138 IAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVN 197

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
            +V Y S++    + G  R  L++   M+S  +K + VTFV     C+    +  G+ H+
Sbjct: 198 DIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGL-HV 256

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
                   +  DA   + +++M G+ G+
Sbjct: 257 HGKMLTSDVECDAYVSSAIINMYGKCGK 284


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 333/607 (54%), Gaps = 48/607 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   L  C  L SL     +H++++++    + +  + L+  Y +    + A+ +F+ + 
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLH 332

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N V++T L+AG++  G    ++ LF +M   L+  ++F  AT+I  C    DL  G+Q
Sbjct: 333 DRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 392

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H+     G    +VV +SL+ MY KC+++  A  +F  M  +++VSWTS+I AH+Q   
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGN 452

Query: 210 GHEALEMF----------------------------REFNYQSRD---RPNQHMLASVIN 238
             +A E F                            R +N    +   RP+     ++  
Sbjct: 453 IAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFK 512

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA LG    G    G  V+ G   +  VA+A++ MY+KCG +  + KVF+ ++   +V+
Sbjct: 513 GCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 572

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G+G+ ++++F++++ RG KP+ +++V VL  CSHSGLV EG  + D M 
Sbjct: 573 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMK 632

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R + I P  +H++C+VD+LGR G L EA  L   + + P     +WG LLSA ++HG  +
Sbjct: 633 RVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAE--VWGALLSACKIHGNNE 690

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  + E +   + +Y+ ++  YA AG+ ++   +R  M+  GI K PG SW+E+ 
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVN 750

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F A +    +   +   L EL  K+   GYV            D  R EI   HS
Sbjct: 751 NKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVR----------TDSPRSEI--HHS 798

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFGL+S+P  + I IMKNLR+C DCH V KLIS +  R+FV+RD  RFHHF  GS
Sbjct: 799 EKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGS 858

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 859 CSCGDYW 865



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 151/314 (48%), Gaps = 35/314 (11%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM- 119
           N  T N ++N YV+L +   A +LF  M   +V S+ +LM+GY    Q   +L  F  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                 PN FTFA  +K+C  L +     Q+   ++ FG Q +  V ++LVDM+ +C  V
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 180 DGARR-------------------------------VFDLMGCRNVVSWTSIIVAHAQNA 208
           D A R                               +FD M  R+VVSW  ++ A +Q+ 
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 209 QGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
           +  EAL+M    + QS+  R +     S + ACA L  L  GK  H  V+R+    +  V
Sbjct: 250 RVREALDMV--VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYV 307

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           ASALV++YAKCG    +  VFN + + + V +T +I G  ++G    S++LFN+M +  +
Sbjct: 308 ASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 328 KPNDVTFVGVLHAC 341
             +      ++  C
Sbjct: 368 TLDQFALATLISGC 381



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N++  + +++ Y K   +  A  +F  M  R+V SW +++  + Q+ Q   +LE F   +
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                 PN    A  + +C +LG         G+V + G + +  VA+ALVDM+ +CG+V
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAK-YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           + + ++F RI  P++    SM+VG  K YG+   +L+LF+ M  R +    V++  ++ A
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDH-ALELFDSMPERDV----VSWNMMVSA 244

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
            S SG V E +  +  M  K G+  D+  YT  +    R   L
Sbjct: 245 LSQSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARLSSL 286


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 321/562 (57%), Gaps = 9/562 (1%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           S  +V+  + K  ++S+    N LIN YVR      AR++FDEM +  + ++ +++AG I
Sbjct: 12  SAVAVYGRMRKKNYMSS----NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLI 67

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
                +  L LF++M G    P+E+T  +V    + L  +  G+QIH +   +G + +LV
Sbjct: 68  QFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLV 127

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V SSL  MY +   +     V   M  RN+V+W ++I+ +AQN      L +++     S
Sbjct: 128 VNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI-S 186

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             RPN+    +V+++C+ L     G+  H   ++ G      V S+L+ MY+KCG +  +
Sbjct: 187 GCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDA 246

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSH 343
            K F+   +   V ++SMI     +G G  +++LFN M  +  ++ N+V F+ +L+ACSH
Sbjct: 247 AKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSH 306

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           SGL D+G++  D M  KYG  P  KHYTCVVD+LGR G LD+A  + +S+ +  D   ++
Sbjct: 307 SGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTD--IVI 364

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W TLLSA  +H   ++A     ++++ +   +  YV L+N +A A  W +V  +R  M+ 
Sbjct: 365 WKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRD 424

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             + KE G SW E + + + F  G+    +  E+ S L+EL  +MK +GY    T  V  
Sbjct: 425 KNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGY-KPDTASVLH 483

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+++E +E  +  HSE+LA+AF L+ +P+G  IRI+KNLR+C DCH  FK IS I  R+ 
Sbjct: 484 DMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREI 543

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
            +RD +RFHHF NG CSCGD+W
Sbjct: 544 TLRDGSRFHHFINGKCSCGDYW 565


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 321/562 (57%), Gaps = 9/562 (1%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           S  +V+  + K  ++S+    N LIN YVR      AR++FDEM +  + ++ +++AG I
Sbjct: 10  SAVAVYGRMRKKNYMSS----NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLI 65

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
                +  L LF++M G    P+E+T  +V    + L  +  G+QIH +   +G + +LV
Sbjct: 66  QFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLV 125

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V SSL  MY +   +     V   M  RN+V+W ++I+ +AQN      L +++     S
Sbjct: 126 VNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI-S 184

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             RPN+    +V+++C+ L     G+  H   ++ G      V S+L+ MY+KCG +  +
Sbjct: 185 GCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDA 244

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDVTFVGVLHACSH 343
            K F+   +   V ++SMI     +G G  +++LFN M  +  ++ N+V F+ +L+ACSH
Sbjct: 245 AKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSH 304

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           SGL D+G++  D M  KYG  P  KHYTCVVD+LGR G LD+A  + +S+ +  D   ++
Sbjct: 305 SGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTD--IVI 362

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W TLLSA  +H   ++A     ++++ +   +  YV L+N +A A  W +V  +R  M+ 
Sbjct: 363 WKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRD 422

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
             + KE G SW E + + + F  G+    +  E+ S L+EL  +MK +GY    T  V  
Sbjct: 423 KNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGY-KPDTASVLH 481

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+++E +E  +  HSE+LA+AF L+ +P+G  IRI+KNLR+C DCH  FK IS I  R+ 
Sbjct: 482 DMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREI 541

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
            +RD +RFHHF NG CSCGD+W
Sbjct: 542 TLRDGSRFHHFINGKCSCGDYW 563


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 209/596 (35%), Positives = 335/596 (56%), Gaps = 45/596 (7%)

Query: 37  LQECKHLISLASVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVS 95
           L+  K L++ A +H      GFL SN F     I+ +        AR++FD      VV+
Sbjct: 151 LKYGKVLLNHAVIH------GFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVT 204

Query: 96  YTSLMAGYINMGQPQIALLLFQKMLGNL--VWPNEFTFATVIKACSMLADLITGKQIHT- 152
           +  +++GY    + + +  LF +M      V PN  T   ++ ACS L DL+ GK I+  
Sbjct: 205 WNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNK 264

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ--- 209
           +I+    + NL++ ++L+DM+  C ++D AR VFD M  R+V+SWTSI+   A   +   
Sbjct: 265 YIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDL 324

Query: 210 ---------------------GH-------EALEMFREFNYQSRDRPNQHMLASVINACA 241
                                G+       E L +FR+    S  +P++  + S++ ACA
Sbjct: 325 ARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ-MSNVKPDEFTMVSILTACA 383

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            LG L  G+ A   + ++  + +  + +AL+DMY KCG+V  + K+FN +      T+T+
Sbjct: 384 HLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTA 443

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MIVG A  G G  +L +F+ M+   + P+++T++GV+ AC+H GLV +G     +M  ++
Sbjct: 444 MIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQH 503

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           GI P+  HY C+VD+LGR G L EA ++  ++ V P+   ++WG+LL A R+H  V +A 
Sbjct: 504 GIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNS--IVWGSLLGACRVHKNVQLAE 561

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            A+N+++E   +    YV L N YA   +W+N+H++R  M   GI K PGCS +E+    
Sbjct: 562 MAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIV 621

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           Y F AG+    +  E+ + L  +++ +   GY    T  VF+DV +E +E  + +HSE+L
Sbjct: 622 YEFVAGDKSHPQSKEIYAKLENMKQDLSNAGY-SPDTSEVFLDVGEEDKETALYMHSEKL 680

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           A+A+ LIS  KG+TIRI+KNLRMC DCH +  ++S +  R+ +VRD  RFHHFR+G
Sbjct: 681 AIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 190/397 (47%), Gaps = 37/397 (9%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI--NCYVRLKKTQVARQLFDEMLEP 91
           I  L+ C  +  +  +HS+ +K+G  SN   L  +I   C         AR++FDE+ +P
Sbjct: 39  ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQP 98

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           +V  + +++ GY  +   +  + L++ ML + + P+ FTF  ++K  +    L  GK + 
Sbjct: 99  SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLL 158

Query: 152 THIETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
            H    GF   NL V    + ++  C  V+ AR++FD+     VV+W  ++  + +  + 
Sbjct: 159 NHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRY 218

Query: 211 HEALEMFREFNYQSR-DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVA 268
            E+  +F E   +     PN   L  +++AC+ L  LV GK  +   ++ G  E N ++ 
Sbjct: 219 EESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILE 278

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG---------AAKY---------- 309
           +AL+DM+A CG ++ +  VF+ +    V+++TS++ G         A KY          
Sbjct: 279 NALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYV 338

Query: 310 ----------GLGRFS--LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
                      + RF   L LF +M    +KP++ T V +L AC+H G ++ G +   + 
Sbjct: 339 SWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG-EWAKTY 397

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
             K  I  D      ++DM  + G +++A K+   +Q
Sbjct: 398 IDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ 434



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 166/370 (44%), Gaps = 21/370 (5%)

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATV--IKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           P ++L LF K + +    + F  + +  ++ C+ + ++    QIH+     G   N +  
Sbjct: 14  PNLSLSLFLKRMISNTPLHSFVKSPISLLETCNTMYEI---NQIHSQTIKTGLSSNHLFL 70

Query: 167 SSLVDM--YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           + ++      +  DV  AR+VFD +   +V  W ++I  +++       + +++     +
Sbjct: 71  TKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHN 130

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVA-HGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
             +P+      ++        L  GKV  +  V+    + N  V    + +++ CG VNY
Sbjct: 131 I-KPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNY 189

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVGVLHAC 341
           + K+F+      VVT+  ++ G  ++     S  LF EM  +   + PN VT V +L AC
Sbjct: 190 ARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSAC 249

Query: 342 SH-SGLVDEGIQHLDSMYRKYGII-PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           S    LV  G + + + Y K GI+ P+      ++DM    G +D A  +   ++     
Sbjct: 250 SKLKDLV--GGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR--- 304

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
             + W ++++      R+D+A +  +Q+ E +     ++  + + Y     ++ V +L  
Sbjct: 305 DVISWTSIVTGFANTCRIDLARKYFDQMPERDYV---SWTAMIDGYLRMNRFKEVLTLFR 361

Query: 460 EMKRTGIHKE 469
           +M+ + +  +
Sbjct: 362 DMQMSNVKPD 371


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 200/527 (37%), Positives = 318/527 (60%), Gaps = 7/527 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQP-QIALLLFQKMLG-NLVWPNEFTFATVIKAC 138
           AR+LF ++  PN+ S+ S++ G      P +  ++LF+KM+      PN FT A V+KAC
Sbjct: 43  ARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKAC 102

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           S+++ L  G+Q+H ++   GF  +  V ++LV+ Y KC D+  A +VFD +  RN+V+W+
Sbjct: 103 SIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWS 162

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +A+    +EAL +FR+   ++   P++  + SVI+ACA+ G L +GK  H  + +
Sbjct: 163 TMISGYARIGLVNEALGLFRDMQ-KAGVVPDEVTMVSVISACAASGALDTGKWVHAYINK 221

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
              E +  +++ALV+MYAKCG +  + +VF+ +       ++SMIVG A  GL   +L+ 
Sbjct: 222 QLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEE 281

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F  M    +KPN VTF+GVL AC+HSGLV EG ++  SM  ++GI+P  + Y C+VD+L 
Sbjct: 282 FFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLC 340

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R   +++A  L +++ + P+  P++W TLL   +    +D +   + +L+E     A  Y
Sbjct: 341 RASLVEDACTLVETMPISPN--PVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENY 398

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           + LSN YA   +WE +  +R +MK  GI   PGCS +E+    + F  G+       EV 
Sbjct: 399 ILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVR 458

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
            +LR++ +++   G+  G +  V  +V DE +E  +  HSERLA+A+GL+     + IRI
Sbjct: 459 EILRDISKRVHAVGHQPGISD-VLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRI 517

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +KNLR+C DCH+V K+IS    R+ +VRD  RFH F NGSCSC DFW
Sbjct: 518 VKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 144/261 (55%), Gaps = 2/261 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ +LKSGF S+ F    L+N Y + +   +A ++FDE+ + N+V+++++++GY  +G 
Sbjct: 114 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 173

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+ M    V P+E T  +VI AC+    L TGK +H +I     + +L + ++
Sbjct: 174 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 233

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV+MY KC  ++ A+ VFD M  ++  +W+S+IV  A N    +ALE F     +++ +P
Sbjct: 234 LVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRME-EAKVKP 292

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N      V++ACA  G +  G+     ++  G   +  +   +VD+  +   V  +  + 
Sbjct: 293 NHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLV 352

Query: 289 NRIS-NPSVVTYTSMIVGAAK 308
             +  +P+ V + +++VG  K
Sbjct: 353 ETMPISPNPVIWRTLLVGCKK 373



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 147/281 (52%), Gaps = 11/281 (3%)

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKC-----NDVDGARRVFDLMGCRNVVSWTSIIV 202
           +QIH  + T     +  +   L  + G C      D+D AR++F  +   N+ SW S+I 
Sbjct: 5   RQIHARLLTHAMPIS-SISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 63

Query: 203 AHAQN-AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
             +Q+     E + +FR+   +    PN   +A V+ AC+ +  L  G+  H  V++SG 
Sbjct: 64  GCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGF 123

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V +ALV+ YAKC  +  + KVF+ I++ ++V +++MI G A+ GL   +L LF +
Sbjct: 124 GSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRD 183

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M   G+ P++VT V V+ AC+ SG +D G + + +   K  I  D +  T +V+M  + G
Sbjct: 184 MQKAGVVPDEVTMVSVISACAASGALDTG-KWVHAYINKQLIETDLELSTALVNMYAKCG 242

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
            ++ A ++  ++ V        W +++    ++G  + A+E
Sbjct: 243 CIERAKEVFDAMPVKDTKA---WSSMIVGLAINGLAEDALE 280


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 206/581 (35%), Positives = 319/581 (54%), Gaps = 36/581 (6%)

Query: 53  ILKSGFLSNTFTLNHLINCYV-RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           + +S  +  T T N ++  Y  R  K +VARQLFD + EP++ SY  ++A Y++    + 
Sbjct: 27  VFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVES 86

Query: 112 ALLLFQKMLGN-------------------------LVWP--NEFTFATVIKACSMLADL 144
           A L F +M                            LV P  N  ++  +I       DL
Sbjct: 87  ARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDL 146

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
              KQ+           ++V  ++++  + K   ++ A + F+ M  +N+V+W ++I  +
Sbjct: 147 DLAKQLFEVAPV----RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGY 202

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            +N Q    L++F+    +S  RPN   L+SV+  C++L  L  GK  H ++ +S   +N
Sbjct: 203 IENCQAENGLKLFKRM-VESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWN 261

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
               ++L+ MY KCG +  + K+F  +    VVT+ +MI G A++G G  +L LF++M  
Sbjct: 262 ITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRD 321

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G+KP+ +TFV VL AC+H+G VD GI++ +SM R YG+     HYTCVVD+LGR G+L 
Sbjct: 322 EGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLV 381

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           EA  L K +   P     ++GTLL A R+H  +++A  A+  L+  + + A  YV L+N 
Sbjct: 382 EAVDLIKKMPFKPHSA--IFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANV 439

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLREL 504
           YA    W++V  +R  MK   + K PG SW+E++   + F +G+ +    + +   L EL
Sbjct: 440 YAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNEL 499

Query: 505 ERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRM 564
           ERKM+  GYV         DV +E +++I+  HSE+LA+A+GLI +P G  IR+ KNLR+
Sbjct: 500 ERKMRLAGYV-PDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRV 558

Query: 565 CRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           C DCH   K IS I  R  +VRD  RFHHFR G CSCGD+W
Sbjct: 559 CGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 37/204 (18%)

Query: 40  CKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C +L +L     VH  I KS    N      L++ Y +    + A +LF  M + +VV++
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTW 296

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            ++++GY   G  + AL LF KM    + P+  TF  V+ AC+           H     
Sbjct: 297 NAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACN-----------HAGFVD 345

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G +Y     +S+V  YG     D    V DL+G               +  +  EA+++
Sbjct: 346 LGIEY----FNSMVRDYGVEAKPDHYTCVVDLLG---------------RGGKLVEAVDL 386

Query: 217 FREFNYQSRDRPNQHMLASVINAC 240
            ++  +    +P+  +  +++ AC
Sbjct: 387 IKKMPF----KPHSAIFGTLLGAC 406


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 302/540 (55%), Gaps = 42/540 (7%)

Query: 105 NMGQPQ--IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           N+  PQ    + ++ +M  + V P+  TF  ++ +      L  G++ H  I  FG   +
Sbjct: 36  NVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKD 95

Query: 163 LVVCSSLVDMYGKCND-------------------------------VDGARRVFDLMGC 191
             V +SL++MY  C D                               ++ AR++FD M  
Sbjct: 96  PFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPE 155

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR----PNQHMLASVINACASLGRLV 247
           RNV+SW+ +I  +    +  EAL++FRE      +     PN+  +++V++AC  LG L 
Sbjct: 156 RNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALE 215

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGA 306
            GK  H  + + G E + V+ +AL+DMYAKCGS+  + +VF+ + S   V  Y++MI   
Sbjct: 216 QGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCL 275

Query: 307 AKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
           A YGL      +F+EM  S  I PN VTFVG+L AC H GL+++G  +   M  ++GI P
Sbjct: 276 AMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITP 335

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
             +HY C+VD+ GR+G + EA     S+ ++PD   L+WG+LLS SR+ G +     A  
Sbjct: 336 SIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV--LIWGSLLSGSRMLGDIKTCEGALK 393

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +LIE +   + AYV LSN YA  G W  V  +R EM+  GI K PGCS+VE+    + F 
Sbjct: 394 RLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFV 453

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
            G+   +    + ++L E+ ++++E GYV   T  V +D+E++ +E  +  HSE+LA+AF
Sbjct: 454 VGDESQQESERIYAMLEEIMQRLREAGYVS-DTKEVLLDLEEKDKEMALSYHSEKLAIAF 512

Query: 546 GLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            L+    G  +RI+KNLR+C DCH V K+IS +  R+ VVRD NRFHHF +GSCSC DFW
Sbjct: 513 CLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 14/256 (5%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN--- 122
           N ++N Y +      AR+LFDEM E NV+S++ L+ GY+  G+ + AL LF++M      
Sbjct: 131 NSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 190

Query: 123 --LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              V PN+FT +TV+ AC  L  L  GK +H++I+ +G + ++V+ ++L+DMY KC  ++
Sbjct: 191 EVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLE 250

Query: 181 GARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
            A+RVFD +G  ++V +++++I   A      E  ++F E    +   PN      ++ A
Sbjct: 251 RAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGA 310

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVA----SALVDMYAKCGSVNYSDKVFNRIS-NP 294
           C   G +  GK    ++     EF    +      +VD+Y + G +  ++     +   P
Sbjct: 311 CVHRGLINKGKSYFKMMTE---EFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEP 367

Query: 295 SVVTYTSMIVGAAKYG 310
            V+ + S++ G+   G
Sbjct: 368 DVLIWGSLLSGSRMLG 383



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVSYTSLMAGYINMG 107
           VHS I K G   +      LI+ Y +    + A+++FD +  + +V +Y++++      G
Sbjct: 220 VHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYG 279

Query: 108 QPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVV 165
                  +F +M   N + PN  TF  ++ AC     +  GK     + E FG   ++  
Sbjct: 280 LTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQH 339

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
              +VD+YG+   +  A      M    +V+ W S++
Sbjct: 340 YGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLL 376


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 325/563 (57%), Gaps = 12/563 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++KS    + F  + L++CY+++  T+ A  LFDEM + + VS+ SL++G   +GQ
Sbjct: 67  IHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQ 126

Query: 109 PQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               L +F KM  +  +  NEFTF +VI AC        G  +H      G  Y + V +
Sbjct: 127 LGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVN 186

Query: 168 SLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           +LV+MYGK   V+ A R+F  M    +++VSW SI+   AQN   +EA   F        
Sbjct: 187 ALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGF 246

Query: 226 DRPNQHMLASVINACAS--LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
             P+   + S++ AC +  LGR+V  +V HGV+   G + N  + + L+++Y+K G +N 
Sbjct: 247 -FPDDATMVSLLQACENFPLGRMV--EVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNN 303

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHACS 342
           S KVF  IS P  V +T+M+ G A +G G+ +++ F  ++   G++P+ VTF  +L ACS
Sbjct: 304 SRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACS 363

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           HSGLV EG      M   Y + P   HY+C+VD+LGR G LD+A++L K++  +P+ G  
Sbjct: 364 HSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSG-- 421

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LL A R+H  +D+  EA+  LI  +      Y+ LSN Y+ AG W +   +R+ MK
Sbjct: 422 VWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMK 481

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
              + +  GCS++E  ++ + F   +        +   L E+ +K+++ G+V  +T  + 
Sbjct: 482 NKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVH-ETESIL 540

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            DV++E + +++  HSE++ALA+GL+     + + I+KNLR+CRDCH+  K +S + +R 
Sbjct: 541 HDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRT 600

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            ++RD  RFH F  G CSCGD+W
Sbjct: 601 IIIRDTKRFHQFSGGLCSCGDYW 623


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/539 (35%), Positives = 314/539 (58%), Gaps = 5/539 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWP 126
           L++ Y +      A ++F+ M   N V++++L+ G++  G+   A  LF+ ML   L + 
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFL 333

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +  + A+ ++AC+ L+DL  GKQ+H  +   G   +L   +SL+ MY K   +D A  +F
Sbjct: 334 SPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLF 393

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  ++ VS+++++  + QN +  EA  +FR+       +P+   + S+I AC+ L  L
Sbjct: 394 DQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ-ACNVQPDVATMVSLIPACSHLAAL 452

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  HG V+  G      + +AL+DMYAKCG ++ S ++F+ +    +V++ +MI G 
Sbjct: 453 QHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGY 512

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +GLG+ +  LF +M  +  +P+DVTF+ ++ ACSHSGLV EG +    M  KYGI P 
Sbjct: 513 GIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPR 572

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HY  +VD+L R G LDEAY+  + + +  D    +WG LL A R+H  +D+  + S+ 
Sbjct: 573 MEHYIGMVDLLARGGFLDEAYQFIQGMPLKAD--VRVWGALLGACRVHKNIDLGKQVSSM 630

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + +   +    +V LSN ++ AG ++    +R   K  G  K PGCSW+EI    +AF  
Sbjct: 631 IQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIG 690

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+    + SE+   L  +   + + GY    T  V  DVE+E +E+ +  HSE+LA+AFG
Sbjct: 691 GDRSHAQSSEIYQELDNILVDINKLGY-RADTSFVLQDVEEEEKEKALLYHSEKLAIAFG 749

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++++ +  TI + KNLR+C DCH V K ++ + +R  +VRD NRFHHF+NG CSCGDFW
Sbjct: 750 VLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 169/361 (46%), Gaps = 48/361 (13%)

Query: 80  VARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +AR LFD++  P +  Y +L+  Y   G      L        L  PN +TF  V+KACS
Sbjct: 81  LARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACS 140

Query: 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199
            L DL + + +H H    G   +L V ++LVD+Y KC     A  VF  M  R+VV+W +
Sbjct: 141 ALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNA 200

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           ++  +A + +  + +        Q    PN   L +++   A  G L  G+  H   VR+
Sbjct: 201 MLAGYALHGKYSDTIACL--LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRA 258

Query: 260 GCEFND-----VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            C  +D     +V +AL+DMYAKCG + Y+ +VF  ++  + VT+++++ G    G    
Sbjct: 259 -CSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLE 317

Query: 315 SLDLFNEMISRG---IKPNDVTFVGVLHACS-----------HSGLVDEGIQHLD----- 355
           +  LF +M+++G   + P  V     L AC+           H+ L   G+ H D     
Sbjct: 318 AFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGL-HTDLTAGN 374

Query: 356 ---SMYRKYGII------------PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ---VDP 397
              SMY K G+I             D   Y+ +V    + G+ DEA+++ + +Q   V P
Sbjct: 375 SLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQP 434

Query: 398 D 398
           D
Sbjct: 435 D 435



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 142/308 (46%), Gaps = 28/308 (9%)

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C D+  AR +FD +    +  + ++I A++       AL ++R    +   +PN +    
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPA-LALRLYRSLRRRRLPQPNNYTFPF 134

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V+ AC++L  L S +  H    R+G   +  V++ALVD+YAKC S  ++  VF R+    
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPNDVTFVGVLHACSHSGLVDEG---- 350
           VV + +M+ G A +  G++S  +   ++ +    PN  T V +L   +  G + +G    
Sbjct: 195 VVAWNAMLAGYALH--GKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVH 252

Query: 351 ---IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
              ++       K G++      T ++DM  + G L  A ++ +++ V  +   + W  L
Sbjct: 253 AYSVRACSLHDHKDGVLVG----TALLDMYAKCGHLVYASRVFEAMAVRNE---VTWSAL 305

Query: 408 LSASRLHGRVDIAVEASNQLIE------SNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           +    L GR+  A      ++       S   VA+A    +N   L    + +H+L   +
Sbjct: 306 VGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLC-LGKQLHAL---L 361

Query: 462 KRTGIHKE 469
            ++G+H +
Sbjct: 362 AKSGLHTD 369


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 204/589 (34%), Positives = 330/589 (56%), Gaps = 37/589 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V S I + G   +T  +N L++ Y++      ARQ+FDE    N+V Y ++M+ Y++   
Sbjct: 253 VCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEW 312

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
               L++  +ML     P++ T  + I AC+ L DL  GK  H ++   G +    + ++
Sbjct: 313 ASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNA 372

Query: 169 LVDMYGKCN-------------------------------DVDGARRVFDLMGCRNVVSW 197
           ++DMY KC                                D++ A R+FD M  R++VSW
Sbjct: 373 IIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSW 432

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-LASVINACASLGRLVSGKVAHGVV 256
            ++I A  Q +   EA+E+FRE   Q++  P   + +  + +AC  LG L   K     +
Sbjct: 433 NTMIGALVQVSMFEEAIELFREM--QNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYI 490

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
            ++    +  + +ALVDM+++CG  + +  VF R+    V  +T+ I   A  G    ++
Sbjct: 491 EKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAI 550

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           +LFNEM+ + +KP+DV FV +L ACSH G VD+G Q   SM + +GI P   HY C+VD+
Sbjct: 551 ELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDL 610

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
           LGR G L+EA  L +S+ ++P+   ++WG+LL+A R H  V++A  A+ +L +   +   
Sbjct: 611 LGRAGLLEEAVDLIQSMPIEPN--DVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVG 668

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
            +V LSN YA AG+W +V  +R +MK  G+ K PG S +E++   + F +G+      + 
Sbjct: 669 IHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTH 728

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +  +L E+  ++ E GYV   T  V +DV+++ +E ++  HSE+LA+A+GLI+  +GI I
Sbjct: 729 IGLMLEEINCRLSEAGYVPDTTN-VLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPI 787

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           R++KNLRMC DCH   KL+S +  R+  VRD NR+H F+ G CSC D+W
Sbjct: 788 RVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 216/434 (49%), Gaps = 39/434 (8%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           K  F   L  C  +++L+    VH  +LK G   + F  N LI+ Y    K  + R+LFD
Sbjct: 130 KYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFD 189

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            MLE NVVS+TSL+ GY      + A+ LF +M    V PN  T   VI AC+ L DL  
Sbjct: 190 GMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLEL 249

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GK++ ++I   G + + ++ ++LVDMY KC D+  AR++FD    +N+V + +I+  +  
Sbjct: 250 GKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVH 309

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           +    + L +  E   Q   RP++  + S I ACA LG L  GK +H  V+R+G E  D 
Sbjct: 310 HEWASDVLVILDEM-LQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN 368

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG---------------- 310
           +++A++DMY KCG    + KVF  + N +VVT+ S+I G  + G                
Sbjct: 369 ISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428

Query: 311 -------LGRF--------SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
                  +G          +++LF EM ++GI  + VT VG+  AC + G +D   + + 
Sbjct: 429 LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA-KWVC 487

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           +   K  I  D +  T +VDM  R G    A  + K ++         W   +    + G
Sbjct: 488 TYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSA---WTAAIGVMAMEG 544

Query: 416 RVDIAVEASNQLIE 429
             + A+E  N+++E
Sbjct: 545 NTEGAIELFNEMLE 558



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 218/442 (49%), Gaps = 18/442 (4%)

Query: 37  LQECKHLISLASVHSEILKSGFLSN--TFTLNHLINCYVR---LKKTQVARQLF--DEML 89
           L  CK L  L  +H +++K G L +     LN LI   V+   L+    AR  F  D+  
Sbjct: 32  LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGN 91

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             ++  Y  L+ GY + G    A+LL+ +ML   + P+++TF  ++ ACS +  L  G Q
Sbjct: 92  MASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQ 151

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +H  +   G + ++ V +SL+  Y +C  VD  R++FD M  RNVVSWTS+I  ++    
Sbjct: 152 VHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDL 211

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             EA+ +F +   ++   PN   +  VI+ACA L  L  GK     +   G E + ++ +
Sbjct: 212 SKEAVSLFFQMG-EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVN 270

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALVDMY KCG +  + ++F+  +N ++V Y +++     +      L + +EM+ +G +P
Sbjct: 271 ALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRP 330

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + VT +  + AC+  G +  G      + R  G+         ++DM  + G+ + A K+
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCGKREAACKV 389

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + +   P+   + W +L++     G +++A    ++++E +    N   T+        
Sbjct: 390 FEHM---PNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWN---TMIGALVQVS 443

Query: 450 EWENVHSLRSEMKRTGIHKEPG 471
            +E    L  EM+  GI   PG
Sbjct: 444 MFEEAIELFREMQNQGI---PG 462


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 322/572 (56%), Gaps = 40/572 (6%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           +I   VR      AR+L  +  E NVVS+TSL+AGY   G+P  A+  F  ML + V P+
Sbjct: 177 VIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPD 236

Query: 128 EFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNLVVCSSLVDMYGKCND------- 178
           E      + ACS L +L  G+ +H  +  +      NLVV  +L+DMY KC D       
Sbjct: 237 EVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAV 294

Query: 179 -------------------------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
                                    VD AR +FD MG R+V+++ S+I  +  + +  +A
Sbjct: 295 FDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDA 354

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++F +       R +   + S++ ACASLG L  G+  H  + +   E +  + +AL+D
Sbjct: 355 LQLFMQMRRHGM-RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLD 413

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY KCG V+ +  VF+R+    V T+T+MI G A  G+G+ +L+ F +M   G +P  VT
Sbjct: 414 MYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVT 473

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           ++ VL ACSHS L+DEG  H + M   + + P  +HY C++D+L R+G LDEA  L +++
Sbjct: 474 YIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTM 533

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            + P+   ++WG++LSA R+H  +D+A  A+  L++   +    YV L N Y  + +W +
Sbjct: 534 PMQPNA--VIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWAD 591

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
              +R  M+  G+ K  G S + +  Q + F A +       E+++++ E+  ++K  GY
Sbjct: 592 AKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGY 651

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
               T  + VDV++E +E+ +  HSE++A+AFGLIS+P  + I I+KNLR+C DCH   K
Sbjct: 652 -SPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIK 710

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L+S +  R+ +VRD +RFHHFR+G+CSC DFW
Sbjct: 711 LVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 38/278 (13%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N +I+ Y +L    VAR LFD+M   +V+++ S++ GYI+ G+ + AL LF +M  + + 
Sbjct: 308 NAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMR 367

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
            + FT  +++ AC+ L  L  G+ +H  IE    + ++ + ++L+DMY KC  VD A  V
Sbjct: 368 ADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAV 427

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASL 243
           F  MG R+V +WT++I   A N  G +ALE F +     RD  +P      +V+ AC+  
Sbjct: 428 FHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMK---RDGFQPTSVTYIAVLTACSHS 484

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             L  G++           FN++                   +  +++ +P V  Y  MI
Sbjct: 485 SLLDEGRL----------HFNEM-------------------RSLHKL-HPQVEHYGCMI 514

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
              A+ GL   ++ L   M    ++PN V +  +L AC
Sbjct: 515 DLLARSGLLDEAMHLVQTM---PMQPNAVIWGSILSAC 549



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 169/415 (40%), Gaps = 81/415 (19%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLI----NCYVRLKKTQVARQLFDEMLEPNVVSY---TSL 99
           + +H+ +  SG +++  +  HL+    N     +  +    LFD +  P+  ++   T+L
Sbjct: 16  SQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRL--PHSTTFLFDTAL 73

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH---IET 156
            A           +LL ++M    V    FTF  V + C+  A    G  +  H   + T
Sbjct: 74  RACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRT 133

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC------------------------- 191
                  +V + L+ MY      D ARR FD +                           
Sbjct: 134 MLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRL 193

Query: 192 ------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASL 243
                 RNVVSWTS+I  +++  +  +A+     FN    D   P++  +   ++AC+ L
Sbjct: 194 LVQAPERNVVSWTSLIAGYSRAGRPADAVYC---FNCMLSDGVAPDEVAVIGALSACSKL 250

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN---RISNPS----- 295
             L  G++ H +V +      D +  AL+DMYAKCG +  +  VF+   R   P      
Sbjct: 251 KNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAI 310

Query: 296 ------------------------VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
                                   V+T+ SMI G    G  R +L LF +M   G++ ++
Sbjct: 311 IDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADN 370

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            T V +L AC+  G +  G + L +   +  +  D    T ++DM  + GR+DEA
Sbjct: 371 FTVVSLLTACASLGALPHG-RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEA 424



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 42/224 (18%)

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323
           + VV + ++    + G ++ + ++  +    +VV++TS+I G ++ G    ++  FN M+
Sbjct: 170 DAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCML 229

Query: 324 SRGIKPNDVTFVGVLHACSHSG------------------LVDEGIQHLDSMYRKYGIIP 365
           S G+ P++V  +G L ACS                     + D  +  L  MY K G I 
Sbjct: 230 SDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIA 289

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
            A+    V D +GR  +                  P  W  ++      G VD+A    +
Sbjct: 290 QAQ---AVFDAVGRGQK------------------PEPWNAIIDGYCKLGHVDVARSLFD 328

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           Q+   +    N+ +T    Y  +G   +   L  +M+R G+  +
Sbjct: 329 QMGARDVITFNSMIT---GYIHSGRLRDALQLFMQMRRHGMRAD 369



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 34  IQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           +  L  C  L +L    ++H+ I +     + +    L++ Y++  +   A  +F  M E
Sbjct: 374 VSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGE 433

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK-- 148
            +V ++T+++AG    G  + AL  F +M  +   P   T+  V+ ACS  + L  G+  
Sbjct: 434 RDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLH 493

Query: 149 --------QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTS 199
                   ++H  +E +G          ++D+  +   +D A  +   M  + N V W S
Sbjct: 494 FNEMRSLHKLHPQVEHYG---------CMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGS 544

Query: 200 IIVA 203
           I+ A
Sbjct: 545 ILSA 548


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 210/617 (34%), Positives = 334/617 (54%), Gaps = 49/617 (7%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRL---KKTQVARQLFDEML 89
              Q+  CK    L  +H+  +K+G + +      L+  ++ L   ++ + AR+ F ++ 
Sbjct: 18  LFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLK-FLTLSTQREIKYARKFFSQIH 76

Query: 90  EPNVVSYTSLMAGYINMGQPQI-------ALLLFQKMLGN-LVWPNEFTFATVIKACSML 141
            PN  S+ +++    +     +       ALL F  ML + LV PN+FTF  V+KAC+ L
Sbjct: 77  HPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKL 136

Query: 142 ADLITGKQIHTHIETFG--------------------------------FQYNLVVCSSL 169
           A +  GKQ+H  +   G                                 + N+V+ + +
Sbjct: 137 ARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVM 196

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +D Y +  D+  +R +FD M  ++VVSW  +I   AQN    EA+EMF +        PN
Sbjct: 197 IDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVP-PN 255

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
              L SV+ A + LG +  GK  H    ++  E +DV+ SAL+DMY+KCGS++ + +VF 
Sbjct: 256 YVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFE 315

Query: 290 RISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            I N  + +T++++I G A +G  R +LD F  M   G+ P+DV ++GVL ACSH+GLV+
Sbjct: 316 GIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVE 375

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG      M    G++P  +HY C+VD+LGR G L+EA +L  ++ V PD   ++   LL
Sbjct: 376 EGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDD--VILKALL 433

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A ++HG +++    +  L+      + +YV LSN +A  G WE V  +R +MK   I K
Sbjct: 434 GACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRK 493

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           +PGCSW+E+    + F   +    R   + S+L E+  +++  GY    T  V ++++++
Sbjct: 494 DPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQ-VLLNMDEK 552

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            ++  +  HSE++A+AFGLIS      ++I+KNLR+C DCH   KL+S I  R  +VRD 
Sbjct: 553 EKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDR 612

Query: 589 NRFHHFRNGSCSCGDFW 605
            RFHHF NGSCSC D+W
Sbjct: 613 KRFHHFENGSCSCMDYW 629


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 316/580 (54%), Gaps = 39/580 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N F    LI  YVR      AR++ D M E   +++ ++++GY++ G  + AL LF+KM 
Sbjct: 222 NEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMR 281

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ----YNLVVCSSLVDMYGKC 176
              V  +E T+ +VI AC+     + GKQ+H +I          + L V ++L+ +Y K 
Sbjct: 282 LLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKY 341

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAH-------------------------------A 205
             VDGAR++F  M  +++++W +++  +                               A
Sbjct: 342 GKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLA 401

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           QN  G +AL++F +      + PN +  A  I AC+ LG L +G+  H  +V  G +   
Sbjct: 402 QNGFGEQALKLFNQMKLDGYE-PNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTL 460

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V +A++ MYA+CG V  +  +F  +     V++ SMI    ++G G  +++L+ +M+  
Sbjct: 461 SVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKE 520

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           GI P+  TF+ VL ACSH+GLV+EG ++ +SM   YGI P   HY  ++D+  R G+  +
Sbjct: 521 GILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSD 580

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           A  +  S+  +      +W  LL+  R HG +D+ +EA+ +L +   Q    YV LSN Y
Sbjct: 581 AKNVIDSMPFEARAP--IWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMY 638

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           A  G W +V   R  M+  G+ KEP CSW E+ ++ + F   + +      + + L +L 
Sbjct: 639 ASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLN 698

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
            +MK+ GY+   T  V  D+E E +E  +  HSE+LA+AFGL+ +P+G T+R+ KNLR+C
Sbjct: 699 LEMKKIGYI-PDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRIC 757

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH+  K +S +V R+ VVRD  RFHHF+NG CSC ++W
Sbjct: 758 GDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 210/495 (42%), Gaps = 115/495 (23%)

Query: 45  SLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVS-------- 95
           SLA +VH  ++ SGF      +N LI+ Y +      AR+LFDE+ +P+V++        
Sbjct: 30  SLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAY 89

Query: 96  -------------------------YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
                                    Y +++ GY +M     A+ LF+ M      P++FT
Sbjct: 90  SALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFT 149

Query: 131 FATVIKACSML-ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC---------NDVD 180
           FA+V+ A +++  D     Q+H  +  FG +    V ++L+ +Y KC         + + 
Sbjct: 150 FASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMA 209

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQ------------------------GH----- 211
            AR++FD M  RN   WT++I  + +N                          G+     
Sbjct: 210 SARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGL 269

Query: 212 --EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC----EFND 265
             +AL +FR+       + ++    SVI+ACA  G  + GK  H  ++++      +F  
Sbjct: 270 FEDALTLFRKMRLLGV-QVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLL 328

Query: 266 VVASALVDMYAKCGSVNYSDKV-------------------------------FNRISNP 294
            V + L+ +Y K G V+ + K+                               F ++   
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEK 388

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
           +++T+T MI G A+ G G  +L LFN+M   G +PND  F G + ACS  G ++ G Q L
Sbjct: 389 NLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ-L 447

Query: 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLH 414
            +     G          ++ M  R G ++ A  +  ++   P   P+ W ++++A   H
Sbjct: 448 HAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTM---PFVDPVSWNSMIAALGQH 504

Query: 415 GRVDIAVEASNQLIE 429
           G    A+E   Q+++
Sbjct: 505 GHGVKAIELYEQMLK 519



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 131/254 (51%), Gaps = 3/254 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           + +  T N L++ YV   + + A+  F +M E N++++T +++G    G  + AL LF +
Sbjct: 356 VKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQ 415

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           M  +   PN++ FA  I ACS+L  L  G+Q+H  I   G    L V ++++ MY +C  
Sbjct: 416 MKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGI 475

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           V+ AR +F  M   + VSW S+I A  Q+  G +A+E++ +   +    P++    +V++
Sbjct: 476 VEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQM-LKEGILPDRRTFLTVLS 534

Query: 239 ACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSV 296
           AC+  G +  G +  + ++   G    +   + ++D++ + G  + +  V + +      
Sbjct: 535 ACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARA 594

Query: 297 VTYTSMIVGAAKYG 310
             + +++ G   +G
Sbjct: 595 PIWEALLAGCRTHG 608



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 167/415 (40%), Gaps = 89/415 (21%)

Query: 131 FATVIKACSM-LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           FA +   C   L+     + +H H+   GF+    + + L+D+Y K +D   AR++FD +
Sbjct: 15  FAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEI 74

Query: 190 GCRNVVSWTSIIVAHAQ------------------------NA---------QGHEALEM 216
              +V++ T++I A++                         NA          GH A+E+
Sbjct: 75  PQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIEL 134

Query: 217 FREFNYQSRDRPNQHMLASVINACASL--GRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
           FR   + +  +P+    ASV++A   +       G++ HG VV+ G E    V +AL+ +
Sbjct: 135 FRAMRW-ANFQPDDFTFASVLSASTLIFYDERQCGQM-HGTVVKFGIEIFPAVLNALLSV 192

Query: 275 YAKC----------------------------------------GSVNYSDKVFNRISNP 294
           Y KC                                        G +  + ++ + ++  
Sbjct: 193 YVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQ 252

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354
             + + +MI G   +GL   +L LF +M   G++ ++ T+  V+ AC+  G    G Q +
Sbjct: 253 PGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQ-V 311

Query: 355 DSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            +   K  + PD      V    + +  + G++D A K+   +   P    + W TLLS 
Sbjct: 312 HAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEM---PVKDIITWNTLLSG 368

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
               GR++ A     Q+ E N      +  + +  A  G  E    L ++MK  G
Sbjct: 369 YVNAGRMEEAKSFFAQMPEKNLLT---WTVMISGLAQNGFGEQALKLFNQMKLDG 420



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 10/202 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H++I+  G  S     N +I  Y R    + AR +F  M   + VS+ S++A     G 
Sbjct: 447 LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGH 506

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVCS 167
              A+ L+++ML   + P+  TF TV+ ACS    +  G +  ++ +E +G        +
Sbjct: 507 GVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYA 566

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQNAQGHEALEMFREFNYQ 223
            ++D++ +      A+ V D M        W +++     H     G EA E   +   Q
Sbjct: 567 RMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQ 626

Query: 224 SRDRPNQHMLASVINACASLGR 245
                  ++L S  N  ASLGR
Sbjct: 627 ---HDGTYVLLS--NMYASLGR 643



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 56/265 (21%)

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT---------- 298
            +  HG V+ SG +    + + L+D+Y K     Y+ K+F+ I  P V+           
Sbjct: 32  ARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSA 91

Query: 299 -----------------------YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
                                  Y +MI G +    G  +++LF  M     +P+D TF 
Sbjct: 92  LGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFA 151

Query: 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML-------------GRTGR 382
            VL A +     +     +     K+GI    + +  V++ L               +  
Sbjct: 152 SVLSASTLIFYDERQCGQMHGTVVKFGI----EIFPAVLNALLSVYVKCASSPLVSSSSL 207

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           +  A KL   +   P     +W TL++    +G +  A E  + + E      NA ++  
Sbjct: 208 MASARKLFDEM---PKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMIS-- 262

Query: 443 NTYALAGEWENVHSLRSEMKRTGIH 467
             Y   G +E+  +L  +M+  G+ 
Sbjct: 263 -GYLHHGLFEDALTLFRKMRLLGVQ 286


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 202/607 (33%), Positives = 332/607 (54%), Gaps = 48/607 (7%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   L  C  L SL     +H+++++S    + +  + LI  Y +    + A+++F+ + 
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N VS+T L+ G +       ++ LF +M   L+  ++F  AT+I  C    DL  G+Q
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ 392

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ--- 206
           +H+     G    +VV +SL+ +Y KC D+  A  VF  M  R++VSWTS+I A++Q   
Sbjct: 393 LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGN 452

Query: 207 ----------------------------NAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
                                       +    + L+M+     Q    P+     ++  
Sbjct: 453 IIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFR 512

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +G    G    G  V++G   N  VA+A + MY+KCG ++ + K+F+ ++   VV+
Sbjct: 513 GCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS 572

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G+G+ +   F++M+S+G KP+ +++V VL  CSHSGLV EG  + D M 
Sbjct: 573 WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMT 632

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R +GI P  +H++C+VD+LGR G L EA  L   + + P     +WG LLSA ++HG  +
Sbjct: 633 RVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAE--VWGALLSACKIHGNDE 690

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  + E +   + +Y+ L+  Y+ AG+ ++   +R  M+  GI K PG SW+E+ 
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 750

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F A +    +   + + L EL  K+   GYV            +  R EI   HS
Sbjct: 751 NKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYV----------RTESPRSEI--HHS 798

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFG++S+P  + I IMKNLR+C DCH V KLIS + +R+FV+RD  RFHHF++GS
Sbjct: 799 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 858

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 859 CSCGDYW 865



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 5/308 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F  N ++  Y +L     A + F++M E +VVS+  ++A     G+ + AL L  +M   
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V  +  T+ + + AC+ L  L  GKQ+H  +     Q +  V S+L+++Y KC     A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +RVF+ +  RN VSWT +I    Q     +++E+F +   +     +Q  LA++I+ C +
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM-AIDQFALATLISGCFN 383

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              L  G+  H + ++SG     VV+++L+ +YAKCG +  ++ VF+ +S   +V++TSM
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I   ++ G    + + F+ M +R    N +T+  +L A    G  ++G++   +M  +  
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 499

Query: 363 IIPDAKHY 370
           + PD   Y
Sbjct: 500 VTPDWVTY 507



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 149/314 (47%), Gaps = 35/314 (11%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM- 119
           N  T N ++N Y +      A +LFD M   +V S+ +LM+GY    +    L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 120 -LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
             G+ + PN FTF  V+K+C  L       Q+      F F  +  V ++LVDM+ +C  
Sbjct: 130 RSGDSL-PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGY 188

Query: 179 VDGARRV-------------------------------FDLMGCRNVVSWTSIIVAHAQN 207
           VD A R+                               F+ M  R+VVSW  +I A +Q+
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  EAL +  E + +   R +     S + ACA L  L  GK  H  V+RS  + +  V
Sbjct: 249 GRVREALGLVVEMHRKGV-RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           ASAL+++YAKCGS   + +VFN + + + V++T +I G+ +Y     S++LFN+M +  +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 328 KPNDVTFVGVLHAC 341
             +      ++  C
Sbjct: 368 AIDQFALATLISGC 381



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 8/272 (2%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N++  + +++ Y K   +  A  +FD M  R+V SW +++  + Q  +  + LE F   +
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                 PN      V+ +C +LG         G+  +     +  V +ALVDM+ +CG V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAK-YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +++ ++F++I  P++    SM+ G AK YG+   +++ F +M  R +    V++  ++ A
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH-AIEYFEDMAERDV----VSWNMMIAA 244

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDG 399
            S SG V E +  +  M+RK G+  D+  YT  +    R   L    +L AK I+  P  
Sbjct: 245 LSQSGRVREALGLVVEMHRK-GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 303

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            P +   L+      G    A    N L + N
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRN 335



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 46/270 (17%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR-I 291
           LA  + +C S G L   +  HG +V  G      + + L+  Y  CG+++ + ++    I
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK----------------------- 328
             P+V+T+  M+ G AK G    + +LF+ M  R +                        
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 329 ---------PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
                    PN  TF  V+ +C   G  +   Q L  ++ K+    D    T +VDM  R
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL-GLFWKFDFWGDPDVETALVDMFVR 185

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLW---GTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
            G +D A +L   I+      P ++     L   ++L+G +D A+E    + E +    N
Sbjct: 186 CGYVDFASRLFSQIER-----PTIFCRNSMLAGYAKLYG-IDHAIEYFEDMAERDVVSWN 239

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
             +      + +G       L  EM R G+
Sbjct: 240 MMIA---ALSQSGRVREALGLVVEMHRKGV 266


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 331/585 (56%), Gaps = 17/585 (2%)

Query: 28  HTKAHFIQQLQECKHL-----ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR 82
             +A ++  L+ C HL          +H   +  GF ++    N LI+ Y +    + A 
Sbjct: 81  QNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAA 140

Query: 83  QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA 142
            +F++M   N++SYTS++  Y +  +   A  L++KML   + P+ + +A  +  C  + 
Sbjct: 141 GVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIR 200

Query: 143 DLITGKQIHTHIETFGFQYNLVVCS-SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           +   G+ IH  ++    +    VCS +LV MYG+   +  A+ VFD +  +++ S+ ++I
Sbjct: 201 E---GEAIH--VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMI 255

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
              A+   G +A+ ++ E   ++ + PN     SV++AC+ LG L  GK  H  V + G 
Sbjct: 256 AVFAKYDDGSKAISLYIEMEGRNLE-PNLWTFTSVLDACSKLGALTEGKEIHKKV-KGGD 313

Query: 262 EFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
           +  DV   +ALV+MYAKCGS + +  VFN     +V T+TS++   ++ G  ++ L+ + 
Sbjct: 314 QPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQ 373

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M   G+ P+DVTF  + +ACSHSGL DEG+ +  +M   + I+P   HYTC++D+LGR 
Sbjct: 374 RMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRV 433

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           GRL EA +L +++   PD   + W  LLSA +++G + I   A  ++ E N   +  Y+ 
Sbjct: 434 GRLREAEELVRTMPYSPD--VVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLL 491

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           + N YA AG+W +V  ++  +K+ G+ K PG S +E + + + F  G+       E+ + 
Sbjct: 492 MGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRAR 551

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L+E+  ++   GY    T  V VDV +E + E++  HSER+AL  GL++   G T+ I+K
Sbjct: 552 LQEVHEQLSHAGY-EPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVK 610

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR+C DCH  FKL+S ++ R  +VRD +RFH F+ GSCSCGD+W
Sbjct: 611 NLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 183/369 (49%), Gaps = 13/369 (3%)

Query: 62  TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           TF  N L+  Y R K    A   F E+ E N  SY  +M  Y      + AL LF+K + 
Sbjct: 17  TFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSIN 76

Query: 122 NLVWPNEFTFATVIKACSMLAD--LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             +  N+ T+ TV+K+C+ L +  L  GK+IH H    GF  +LVV +SL+ MY KC   
Sbjct: 77  EELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSF 136

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             A  VF+ M  +N++S+TS+I A+   A+  EA E++++   +    P+ +  A+ +  
Sbjct: 137 KFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGI-MPDIYAYAAALAV 195

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C ++     G+  H V + +      V ++ALV MY + G +  +  VF+ I    + +Y
Sbjct: 196 CPTIR---EGEAIH-VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASY 251

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI   AKY  G  ++ L+ EM  R ++PN  TF  VL ACS  G + EG +    +  
Sbjct: 252 NNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKV-- 309

Query: 360 KYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           K G  P D  + T +V+M  + G   EA  +     +        W +L+SA    G+  
Sbjct: 310 KGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLK---NVFTWTSLMSAYSQPGQSQ 366

Query: 419 IAVEASNQL 427
             +EA  ++
Sbjct: 367 YRLEAYQRM 375


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 180/525 (34%), Positives = 319/525 (60%), Gaps = 3/525 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  + +P    + +++ GY+N    ++AL  + +M+   + P+ FT+  ++KAC+ 
Sbjct: 86  AASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTR 145

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L  +  GKQIH H+   G + ++ V +SL++MYG+C +++ +  VF+ +  ++  SW+S+
Sbjct: 146 LKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSM 205

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
             A        E L +FRE   ++  +  +  + S ++ACA+ G L  G   HG ++R+ 
Sbjct: 206 FSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNI 265

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E N +V ++LVDMY KCG ++ +  +F ++   + +TY++MI G A +G G  +L +F+
Sbjct: 266 SELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFS 325

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EMI  G++P+ V +V +L+ACSHSGLV EG +    M ++  + P A+HY C+VD+LGR 
Sbjct: 326 EMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRA 385

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G L+EA +  +SI ++ +   ++W + LS  R+H  +++   A+ +L++        Y+ 
Sbjct: 386 GLLEEALETIQSIPIEQND--VVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLL 443

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           +SN Y+ A  W++V   R+E+   G+ + PG S V+++ +T+ F + +    +  E+  +
Sbjct: 444 ISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKM 503

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L ++E ++K  GY    T  + ++V++E ++E +  HS+++A+AF L+  P G  I+I +
Sbjct: 504 LHQMEWQLKFEGYSPDLTQ-ILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIAR 562

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLRMC DCH   K IS I ER+ VVRD NRFH F+ G+CSC D+W
Sbjct: 563 NLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 209/611 (34%), Positives = 327/611 (53%), Gaps = 47/611 (7%)

Query: 36  QLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV---ARQLFDEMLEPN 92
             ++C+ +  L   HS+I++ G  S+   +  LIN   R   +     A +LFD + +P+
Sbjct: 28  HFEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPD 87

Query: 93  VVSYTSLMAGYIN--MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
              Y +++ G+++  +      LLL+  ML N V PN FTF +++ AC  +     G QI
Sbjct: 88  AFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQI 144

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF------------------------ 186
           H H+  FGF  + V  +SL+ MY     ++ ARRVF                        
Sbjct: 145 HAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLI 204

Query: 187 -------DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
                   LM  +N  SW +++ A+ Q  + HEA  +F     ++ +  ++ +  ++++A
Sbjct: 205 DEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSA 264

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS--VV 297
           C  LG L  GK  H  + R+G E +  + +A+VDMY KCG +  + +VF+ +  P   + 
Sbjct: 265 CTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWIS 324

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++  MI G A +G G  ++ LF EM  + + P+D+TF+ +L AC+HSGLV+EG  +   M
Sbjct: 325 SWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYM 384

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R YGI P  +H+ C+VD+LGR G + EA KL   + V PD   L  GTLL A + H  +
Sbjct: 385 IRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVL--GTLLGACKKHRNI 442

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++  E   ++IE     +  YV L+N YA AG+WE+   +R  M   G+ K PG S +E+
Sbjct: 443 ELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIEL 502

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF---VDVEDEAREEIV 534
           +   + F AG     +  E+ + + E+   +K  GYV    G++     D E+E  E  +
Sbjct: 503 QGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFD-EEEDGENPL 561

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSE+LA+AFGL     G T+RI+KNLR+C DCH   KLIS + +R+ +VRD  RFH F
Sbjct: 562 YYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRF 621

Query: 595 RNGSCSCGDFW 605
           + G CSC D+W
Sbjct: 622 KMGQCSCQDYW 632



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 36/311 (11%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L  C+ +     +H+ + K GF +++  LN LI+ YV  +  + AR++F  +  P+
Sbjct: 128 FPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPD 187

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQ-----------KMLGNLVWPNEF--TFA------- 132
            VS+TSL++GY   G    A  +FQ            M+   V  N F   FA       
Sbjct: 188 SVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKA 247

Query: 133 ------------TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
                       T++ AC+ L  L  GK IH +I+  G + +  + +++VDMY KC  ++
Sbjct: 248 ENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLE 307

Query: 181 GARRVFD--LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
            A +VF    + CR + SW  +I   A +  G  A+++F+E   Q R  P+     +++ 
Sbjct: 308 KALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQ-RVAPDDITFLNLLT 366

Query: 239 ACASLGRLVSGKVAHGVVVR-SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           ACA  G +  G+     ++R  G E        +VD+  + G V  + K+ + +     V
Sbjct: 367 ACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDV 426

Query: 298 TYTSMIVGAAK 308
           T    ++GA K
Sbjct: 427 TVLGTLLGACK 437


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 321/561 (57%), Gaps = 11/561 (1%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            +H  ++ SG   N    N L++ Y ++     +R++  +M   +VV++ +L+ GY     
Sbjct: 485  LHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENED 544

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVCS 167
            P  AL  FQ +    V  N  T  +V+ AC +  DL+  GK +H +I + GF+ +  V +
Sbjct: 545  PDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKN 604

Query: 168  SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM---FREFNYQS 224
            SL+ MY KC D+  ++ +F+ +  R++++W +I+ A+A +  G E L++    R F    
Sbjct: 605  SLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLS- 663

Query: 225  RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
                +Q   +  ++A A L  L  G+  HG+ V+ G E +  + +A  DMY+KCG +   
Sbjct: 664  ---LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEV 720

Query: 285  DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             K+     N S+ ++  +I    ++G      + F+EM+  GIKP  VTFV +L ACSH 
Sbjct: 721  VKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHG 780

Query: 345  GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            GLVD+G+ + D + + +G+ P  +H  CV+D+LGR+GRL EA      + + P+   L+W
Sbjct: 781  GLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPN--DLVW 838

Query: 405  GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
             +LL++ ++H  +D   +A+  L +   +  + +V  SN +A  G WE+V ++R +M   
Sbjct: 839  RSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFK 898

Query: 465  GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
             I K+  CSWV+++D+  +F  G+    +  E+ + L ++++ +KE GYV   T     D
Sbjct: 899  NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV-ADTSQALQD 957

Query: 525  VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
             ++E +E  +  HSERLALA+ L+S P+G T+RI KNLR+C DCH V+K +S ++ R  V
Sbjct: 958  TDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIV 1017

Query: 585  VRDVNRFHHFRNGSCSCGDFW 605
            +RD  RFHHF +G CSC D+W
Sbjct: 1018 LRDQYRFHHFESGLCSCKDYW 1038



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 192/395 (48%), Gaps = 11/395 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + KSG LS+ +    +++ Y        +R++F+EM + NVVS+TSLM GY + G+
Sbjct: 182 VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 241

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+  + +++ M G  V  NE + + VI +C +L D   G+QI   +   G +  L V +S
Sbjct: 242 PEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENS 301

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR--D 226
           L+ M+G   +VD A  +F+ +  R+ +SW SI+ A+AQN    E+    R FN   R  D
Sbjct: 302 LISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEES---SRIFNLMRRFHD 358

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             N   ++++++    +     G+  HG+VV+ G +    V + L+ MYA  G    +D 
Sbjct: 359 EVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADL 418

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF ++    ++++ S++      G    +L +   MI  G   N VTF   L AC     
Sbjct: 419 VFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEF 478

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
            D+G + L  +    G+  +      +V M G+ G +  + ++   +   P    + W  
Sbjct: 479 FDKG-RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQM---PRRDVVAWNA 534

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
           L+     +   D A+ A   L    + V+  Y+T+
Sbjct: 535 LIGGYAENEDPDKALAAFQTL--RVEGVSANYITV 567



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 207/433 (47%), Gaps = 26/433 (6%)

Query: 22  NKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVA 81
           N   SC  +  F Q  +E     +  ++H+  +K     +    N LIN Y +  + + A
Sbjct: 57  NPELSCFDQTGFSQITRE----TTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPA 112

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141
           R LFD+M   N VS+ ++M+G + +G     +  FQKM    + P+ F  A+++ AC   
Sbjct: 113 RYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRS 172

Query: 142 ADLI-TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
             +   G Q+H  +   G   ++ V ++++ +YG    V  +R+VF+ M  RNVVSWTS+
Sbjct: 173 GSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSL 232

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +V ++   +  E +++++    +  +  N++ ++ VI++C  L     G+   G V++SG
Sbjct: 233 MVGYSDKGEPEEVIDIYKSMRGEGVE-CNENSMSLVISSCGLLKDESLGRQIIGQVIKSG 291

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E    V ++L+ M+   G+V+Y++ +FN+IS    +++ S++   A+ G    S  +FN
Sbjct: 292 LESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFN 351

Query: 321 EMISRGIKPNDV---TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
            M     + N     T + VL    H      GI  L     K G         CV + L
Sbjct: 352 LMRRFHDEVNSTTVSTLLSVLGDVDHQKW-GRGIHGL---VVKMGF----DSVVCVCNTL 403

Query: 378 GR----TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
            R     GR +EA  + K +   P    + W +L+++    GR   A+     +I + + 
Sbjct: 404 LRMYAGAGRSEEADLVFKQM---PTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKS 460

Query: 434 VANAYVTLSNTYA 446
           V   YVT ++  A
Sbjct: 461 V--NYVTFTSALA 471



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 168/367 (45%), Gaps = 10/367 (2%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           +++KSG  S     N LI+ +  +     A  +F+++ E + +S+ S++A Y   G  + 
Sbjct: 286 QVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEE 345

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADL---ITGKQIHTHIETFGFQYNLVVCSS 168
           +  +F  M     + +E    TV    S+L D+     G+ IH  +   GF   + VC++
Sbjct: 346 SSRIFNLMRR---FHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNT 402

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ MY      + A  VF  M  ++++SW S++ +   + +  +AL +      ++    
Sbjct: 403 LLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSM-IRTGKSV 461

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S + AC S      G++ HG+VV SG   N ++ +ALV MY K G ++ S +V 
Sbjct: 462 NYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVL 521

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            ++    VV + ++I G A+      +L  F  +   G+  N +T V VL AC   G + 
Sbjct: 522 LQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLL 581

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  + L +     G   D      ++ M  + G L  +  L   +    +   + W  +L
Sbjct: 582 ERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD---NRSIITWNAIL 638

Query: 409 SASRLHG 415
           +A+  HG
Sbjct: 639 AANAHHG 645


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 314/560 (56%), Gaps = 11/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V + ++ SGF  + + +N ++  +V+      AR+LFDEM E ++ S+ +++ G+++ G 
Sbjct: 139 VFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGN 198

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A  LF  M          TF T+I+A + L  +  G+QIH+     G   +  V  +
Sbjct: 199 FSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCA 258

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-- 226
           L+DMY KC  ++ A  VFD M  +  V W SII ++A +    EAL     F Y+ RD  
Sbjct: 259 LIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALS----FYYEMRDSG 314

Query: 227 -RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            + +   ++ VI  CA L  L   K AH  +VR G + + V  +ALVD Y+K G +  + 
Sbjct: 315 AKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAW 374

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            VFNR+   +V+++ ++I G   +G G  ++++F +M+  G+ PN VTF+ VL ACS+SG
Sbjct: 375 HVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSG 434

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L + G +   SM R + + P A HY C+V++LGR G LDEAY+L +S    P     +W 
Sbjct: 435 LSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTN--MWA 492

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
           TLL+A R+H  +++   A+  L     +    Y+ L N Y  +G+ +    +   +KR G
Sbjct: 493 TLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKG 552

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
           +   P C+W+E++ Q+YAF  G+    +  E+   +  +  ++   GYV     L+  DV
Sbjct: 553 LRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALL-PDV 611

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
            DE  + I+  HSE+LA+AFGLI+ P    ++I +  R+C DCH   K I+ +  R+ VV
Sbjct: 612 -DEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVV 670

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD +RFHHFR+GSCSCGD+W
Sbjct: 671 RDASRFHHFRDGSCSCGDYW 690



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 149/303 (49%), Gaps = 13/303 (4%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  ++ AC  L  +   K++  ++   GF+ +L V + ++ ++ KC  +  AR++FD M
Sbjct: 119 TYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEM 178

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEA----LEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             +++ SW ++I     +    EA    L M+ EFN   R R       ++I A A LG 
Sbjct: 179 PEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFN-DGRSRT----FTTMIRASAGLGL 233

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           +  G+  H   ++ G   +  V+ AL+DMY+KCGS+  +  VF+++   + V + S+I  
Sbjct: 234 VQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIAS 293

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    +L  + EM   G K +  T   V+  C+    ++   Q   ++ R+ G   
Sbjct: 294 YALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRR-GYDT 352

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
           D    T +VD   + GR+++A+ +   ++       + W  L++    HG+ + AVE   
Sbjct: 353 DIVANTALVDFYSKWGRMEDAWHVFNRMRRK---NVISWNALIAGYGNHGQGEEAVEMFE 409

Query: 426 QLI 428
           Q++
Sbjct: 410 QML 412


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/588 (35%), Positives = 337/588 (57%), Gaps = 25/588 (4%)

Query: 38  QECKHLISLASVHSEILKSGFLSNTFTL---NHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           + C  +  L  +H+  L++ +     TL     ++           A ++FD +   +  
Sbjct: 113 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSF 172

Query: 95  SYTSLM-AGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            + +L+ A   ++ + + A +L++KML      P++ TF  V+KAC+ +     GKQ+H 
Sbjct: 173 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHC 232

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF  ++ V + L+ +YG C  +D AR+VFD M  R++VSW S+I A  +  +   
Sbjct: 233 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 292

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN---DV-VA 268
           AL++FRE   Q    P+ + + SV++ACA LG L  G  AH  ++R  C+ +   DV V 
Sbjct: 293 ALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK-CDVDVAMDVLVK 349

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--G 326
           ++L++MY KCGS+  +++VF  +    + ++ +MI+G A +G    +++ F+ M+ +   
Sbjct: 350 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 409

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++PN VTFVG+L AC+H G V++G Q+ D M R Y I P  +HY C+VD++ R G + EA
Sbjct: 410 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 469

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHG-RVDIAVEASNQLI-------ESNQQVANAY 438
             +  S+ + PD   ++W +LL A    G  V+++ E +  +I        SN   + AY
Sbjct: 470 IDMVMSMPMKPDA--VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 527

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LS  YA A  W +V  +R  M   GI KEPGCS +EI   ++ F+AG+    +  ++ 
Sbjct: 528 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 587

Query: 499 SLLRELERKMKERGYVGGKTGLVFVD-VEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             L+ ++ +++  GY+  ++    VD   D ++E  + LHSERLA+AFGLI++P    IR
Sbjct: 588 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 647

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I KNLR+C DCH+V KLIS +   + +VRD  RFHHF++GSCSC D+W
Sbjct: 648 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 318/559 (56%), Gaps = 9/559 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLI-NCYVRLKKT-QVARQLFDEMLEPNVVSYTSLMAGYINM 106
           +H+ +LK+G  ++   L  L+ +C      +   AR +FD +  P+  ++ +++  + + 
Sbjct: 7   LHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADS 66

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
                  L   KM    V P+ FTF  V+KAC   A L TG  +H+ +   GF  ++ V 
Sbjct: 67  SPSFSLSLF-SKMTMAGVSPDHFTFPFVLKAC---ARLQTGLDLHSLLFKLGFDSDVYVQ 122

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L+  YG C  +D A + F+ M  R++VSW+S+I   A+N  G+EAL +F+        
Sbjct: 123 NGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTV 182

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P++ ++ SV++A + LG L  GK   G + R+G EF   + +ALVDM+++CG +  S +
Sbjct: 183 KPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMR 242

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF+ +   +V+T+T++I G A +G    +L +F EM + G +P+ VTF GVL ACSH GL
Sbjct: 243 VFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGL 302

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           V EG    +S+  +YG+ P  +HY C+VD+LGR G L+EA K    + + P+   ++W T
Sbjct: 303 VSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS--IIWRT 360

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL A   H  +++A +   ++ E +      YV LSN Y   G W     +R+ M+   I
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRI 420

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            K+PGCS + +    + F AG+    +   +   L  +   +K  GY    + ++F D+E
Sbjct: 421 SKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLF-DIE 479

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +E +E  +G HSE+LA+AF L+      TIR+MKNLR+C DCH   K  SD+ ER+ ++R
Sbjct: 480 EEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIR 539

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF  GSCSC D+W
Sbjct: 540 DRNRFHHFSKGSCSCRDYW 558



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 140/270 (51%), Gaps = 4/270 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L +   +HS + K GF S+ +  N LI+ Y        A + F+EM E ++VS+
Sbjct: 94  LKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSW 153

Query: 97  TSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           +S++A +   G    AL LFQ+M L   V P+E    +V+ A S+L DL  GK I   I 
Sbjct: 154 SSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFIS 213

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             G ++ + + ++LVDM+ +C  ++ + RVFD MG RNV++WT++I   A + +  EAL 
Sbjct: 214 RNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALR 273

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDM 274
           MF E       +P+      V+ AC+  G +  G  V   +    G E        +VD+
Sbjct: 274 MFYEMRNHGF-QPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDL 332

Query: 275 YAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
             + G +N + K  + +   P+ + + +++
Sbjct: 333 LGRAGLLNEACKFVDGMPIRPNSIIWRTLL 362


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/548 (37%), Positives = 310/548 (56%), Gaps = 10/548 (1%)

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE----PNVVSYTSLMAGYINMGQPQIAL 113
            L+N      LI  +    +   AR++F++  E    P  V + ++  GY   G P+ AL
Sbjct: 104 LLNNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESV-WVAMGIGYSRNGYPKEAL 162

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
           LL+ +M+        F F+  +KACS L DL TG+ +H  +       + VV ++L+ +Y
Sbjct: 163 LLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLY 222

Query: 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
            +    + A R+FD M  RN+VSW S+I    +     EA+E FR    +     +   L
Sbjct: 223 SEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGF-SWVTL 281

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
            +++  CA +  L SGK  H V+V+S  + +  V ++LVDMYAKCG+++Y  +VFN +  
Sbjct: 282 TTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQG 341

Query: 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
             + ++ ++I G A  G    +++ F EMI  G  P+ +TF+ +L  CSH+GL D+G + 
Sbjct: 342 KDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRL 401

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
            + M   +GI P  +HY C+VD+LGR GR+ EA ++ K++   P G   +WG+LL++ RL
Sbjct: 402 FEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGS--IWGSLLNSCRL 459

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           HG V +A   + +L E     A  YV LSN YA AG WE+V  +R  M++ G+ KE GCS
Sbjct: 460 HGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCS 519

Query: 474 WVEIRDQTYAFYAGNA-LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           W++I+ + + F AG +  F    E   + + L   M+E GYV   TG+V  DV +E R  
Sbjct: 520 WLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYV-PDTGVVLHDVSEEMRAM 578

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            V  HSERLA  F LI+   G+ IRI KNLR+C DCH   K +S +  R  V+RD NRFH
Sbjct: 579 WVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFH 638

Query: 593 HFRNGSCS 600
           HF++G CS
Sbjct: 639 HFKDGVCS 646



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L  L +   VH+++LK+    +    N L+  Y      + A ++FD M 
Sbjct: 180 FSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMP 239

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
             N+VS+ SL+AG +       A+  F+ M G  +  +  T  T++  C+ +  L +GK+
Sbjct: 240 HRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKE 299

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           IH  I     + +  V +SLVDMY KC  +D  RRVF+ M  +++ SW ++I  +A N +
Sbjct: 300 IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGR 359

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------KVAHGV 255
             EA+E F+E    S   P+     ++++ C+  G    G       K+ HG+
Sbjct: 360 MTEAMESFQEM-ICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGI 411



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
           LA  F LI+   G+ IRI KNL +C DCH   K++S
Sbjct: 700 LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVS 735


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 301/529 (56%), Gaps = 8/529 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV--WPNEFTFATVIKAC 138
           A  + + +   N   + +++  Y     P  AL LF  ML       P++FT+  ++K+C
Sbjct: 47  AHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSC 106

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           + L     GKQ+H  I   G + +  V + L+ MY  C     A +VF  M  R+VVSWT
Sbjct: 107 ARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWT 166

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I     + +  EA+ +F E   +    PN+  + SV+ ACA  G +  G+   GV+  
Sbjct: 167 SMIDGFVDDDRALEAIRLFEEM-VEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEE 225

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
                   V +AL+DMYAKCGS+  + KVF+ I N  V  +T+MI G A +GL   ++ L
Sbjct: 226 RKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTL 285

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F++M S G++P++ T   VL AC ++G   EG  + +SM+ KYGI P  +HY C+VD+L 
Sbjct: 286 FDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLA 345

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE--ASNQLIESNQQVAN 436
           RTG LDEA +  + + ++PD   +LW TL+ AS++HG +D + +      L++ +     
Sbjct: 346 RTGHLDEAEEFIRKMPIEPD--VVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCG 403

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +YV L N YA AG+W +   +R  M + G+ K PGCS +E+    + F AG++      +
Sbjct: 404 SYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEK 463

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           + + L E+E ++K  GY   K   V ++++++ +   +  HSE+LA+AFGLI    G  I
Sbjct: 464 IYAKLDEVEERLKAEGY-HPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEI 522

Query: 557 RIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           RI+KNLR C DCH V KLIS I ++D +VRD  RFHHF NG CSC D+W
Sbjct: 523 RIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 143/264 (54%), Gaps = 3/264 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I KSG  S+ +  N LI+ Y    K+  A ++F +M + +VVS+TS++ G+++  +
Sbjct: 118 LHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDR 177

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF++M+ + V PNE T  +V++AC+    +  G+++   IE         V ++
Sbjct: 178 ALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTA 237

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  +  AR+VFD +  ++V +WT++I   A +    EA+ +F +       RP
Sbjct: 238 LIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGL-RP 296

Query: 229 NQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           ++  + +V++AC + G    G    + +  + G +        +VD+ A+ G ++ +++ 
Sbjct: 297 DERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEF 356

Query: 288 FNRIS-NPSVVTYTSMIVGAAKYG 310
             ++   P VV + ++I  +  +G
Sbjct: 357 IRKMPIEPDVVLWRTLIWASKVHG 380


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/607 (33%), Positives = 332/607 (54%), Gaps = 48/607 (7%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   L  C  L SL     +H+++++S    + +  + LI  Y +    + A+++F+ + 
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 322

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N VS+T L+ G +       ++ LF +M   L+  ++F  AT+I  C    DL  G+Q
Sbjct: 323 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ 382

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ--- 206
           +H+     G    +VV +SL+ +Y KC D+  A  VF  M  R++VSWTS+I A++Q   
Sbjct: 383 LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGN 442

Query: 207 ----------------------------NAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
                                       +    + L+M+     Q    P+     ++  
Sbjct: 443 IIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFR 502

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +G    G    G  V++G   N  VA+A + MY+KCG ++ + K+F+ ++   VV+
Sbjct: 503 GCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS 562

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G+G+ +   F++M+S+G KP+ +++V VL  CSHSGLV EG  + D M 
Sbjct: 563 WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMT 622

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R +GI P  +H++C+VD+LGR G L EA  L   + + P     +WG LLSA ++HG  +
Sbjct: 623 RVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAE--VWGALLSACKIHGNDE 680

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  + E +   + +Y+ L+  Y+ AG+ ++   +R  M+  GI K PG SW+E+ 
Sbjct: 681 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 740

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F A +    +   + + + EL  K+   GYV            +  R EI   HS
Sbjct: 741 NKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV----------RTESPRSEI--HHS 788

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFG++S+P  + I IMKNLR+C DCH V KLIS + +R+FV+RD  RFHHF++GS
Sbjct: 789 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 848

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 849 CSCGDYW 855



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 5/308 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F  N ++  Y +L     A + F++M E +VVS+  ++A     G+ + AL L  +M   
Sbjct: 195 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 254

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V  +  T+ + + AC+ L  L  GKQ+H  +     Q +  V S+L+++Y KC     A
Sbjct: 255 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 314

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +RVF+ +  RN VSWT +I    Q     +++E+F +   +     +Q  LA++I+ C +
Sbjct: 315 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM-AIDQFALATLISGCFN 373

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              L  G+  H + ++SG     VV+++L+ +YAKCG +  ++ VF+ +S   +V++TSM
Sbjct: 374 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 433

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I   ++ G    + + F+ M +R    N +T+  +L A    G  ++G++   +M  +  
Sbjct: 434 ITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 489

Query: 363 IIPDAKHY 370
           + PD   Y
Sbjct: 490 VTPDWVTY 497



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 161/361 (44%), Gaps = 47/361 (13%)

Query: 27  CHTKAHFIQQ-----LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78
           C    H + Q     L+ C    +LA   ++H  ++  G  S  F  N L++ Y+     
Sbjct: 12  CRLLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGAL 71

Query: 79  QVARQLF-DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML------GNLVWPNEFTF 131
             AR+L   ++ EPNV+++  +M GY   G    A  LF +M        N +  +    
Sbjct: 72  SDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRP 131

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV------ 185
           A    +C  L       Q+      F F  +  V ++LVDM+ +C  VD A R+      
Sbjct: 132 AGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIER 191

Query: 186 -------------------------FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
                                    F+ M  R+VVSW  +I A +Q+ +  EAL +  E 
Sbjct: 192 PTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEM 251

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
           + +   R +     S + ACA L  L  GK  H  V+RS  + +  VASAL+++YAKCGS
Sbjct: 252 HRKGV-RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 310

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
              + +VFN + + + V++T +I G+ +Y     S++LFN+M +  +  +      ++  
Sbjct: 311 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 370

Query: 341 C 341
           C
Sbjct: 371 C 371



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 140/312 (44%), Gaps = 18/312 (5%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL- 188
             A  +++C     L   + +H  + T G    + + ++L+  Y  C  +  ARR+    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN-------ACA 241
           +   NV++   ++  +A+     +A E+F       RD  + + L S  +       +C 
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRM--PRRDVASWNTLMSDTSRPAGSWMSCG 139

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
           +LG         G+  +     +  V +ALVDM+ +CG V+++ ++F++I  P++    S
Sbjct: 140 ALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNS 199

Query: 302 MIVGAAK-YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           M+ G AK YG+   +++ F +M  R +    V++  ++ A S SG V E +  +  M+RK
Sbjct: 200 MLAGYAKLYGIDH-AIEYFEDMAERDV----VSWNMMIAALSQSGRVREALGLVVEMHRK 254

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
            G+  D+  YT  +    R   L    +L AK I+  P   P +   L+      G    
Sbjct: 255 -GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 313

Query: 420 AVEASNQLIESN 431
           A    N L + N
Sbjct: 314 AKRVFNSLQDRN 325



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 20/244 (8%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR-I 291
           LA  + +C S G L   +  HG +V  G      + + L+  Y  CG+++ + ++    I
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF------VGVLHACSHSG 345
             P+V+T+  M+ G AK G    + +LF+ M  R +   +          G   +C   G
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALG 142

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW- 404
             +   Q L  ++ K+    D    T +VDM  R G +D A +L   I+      P ++ 
Sbjct: 143 CRELAPQLL-GLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIER-----PTIFC 196

Query: 405 --GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
               L   ++L+G +D A+E    + E +    N  +      + +G       L  EM 
Sbjct: 197 RNSMLAGYAKLYG-IDHAIEYFEDMAERDVVSWNMMIA---ALSQSGRVREALGLVVEMH 252

Query: 463 RTGI 466
           R G+
Sbjct: 253 RKGV 256


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/607 (33%), Positives = 332/607 (54%), Gaps = 48/607 (7%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   L  C  L SL     +H+++++S    + +  + LI  Y +    + A+++F+ + 
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N VS+T L+ G +       ++ LF +M   L+  ++F  AT+I  C    DL  G+Q
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ 392

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ--- 206
           +H+     G    +VV +SL+ +Y KC D+  A  VF  M  R++VSWTS+I A++Q   
Sbjct: 393 LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGN 452

Query: 207 ----------------------------NAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
                                       +    + L+M+     Q    P+     ++  
Sbjct: 453 IIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFR 512

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA +G    G    G  V++G   N  VA+A + MY+KCG ++ + K+F+ ++   VV+
Sbjct: 513 GCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS 572

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G+G+ +   F++M+S+G KP+ +++V VL  CSHSGLV EG  + D M 
Sbjct: 573 WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMT 632

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R +GI P  +H++C+VD+LGR G L EA  L   + + P     +WG LLSA ++HG  +
Sbjct: 633 RVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAE--VWGALLSACKIHGNDE 690

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  + E +   + +Y+ L+  Y+ AG+ ++   +R  M+  GI K PG SW+E+ 
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 750

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F A +    +   + + + EL  K+   GYV            +  R EI   HS
Sbjct: 751 NKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV----------RTESPRSEI--HHS 798

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFG++S+P  + I IMKNLR+C DCH V KLIS + +R+FV+RD  RFHHF++GS
Sbjct: 799 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 858

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 859 CSCGDYW 865



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 5/308 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           F  N ++  Y +L     A + F++M E +VVS+  ++A     G+ + AL L  +M   
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V  +  T+ + + AC+ L  L  GKQ+H  +     Q +  V S+L+++Y KC     A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +RVF+ +  RN VSWT +I    Q     +++E+F +   +     +Q  LA++I+ C +
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM-AIDQFALATLISGCFN 383

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
              L  G+  H + ++SG     VV+++L+ +YAKCG +  ++ VF+ +S   +V++TSM
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I   ++ G    + + F+ M +R    N +T+  +L A    G  ++G++   +M  +  
Sbjct: 444 ITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 499

Query: 363 IIPDAKHY 370
           + PD   Y
Sbjct: 500 VTPDWVTY 507



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 149/314 (47%), Gaps = 35/314 (11%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM- 119
           N  T N ++N Y +      A +LFD M   +V S+ +LM+GY    +    L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 120 -LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
             G+ + PN FTF  V+K+C  L       Q+      F F  +  V ++LVDM+ +C  
Sbjct: 130 RSGDSL-PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGY 188

Query: 179 VDGARRV-------------------------------FDLMGCRNVVSWTSIIVAHAQN 207
           VD A R+                               F+ M  R+VVSW  +I A +Q+
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  EAL +  E + +   R +     S + ACA L  L  GK  H  V+RS  + +  V
Sbjct: 249 GRVREALGLVVEMHRKGV-RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           ASAL+++YAKCGS   + +VFN + + + V++T +I G+ +Y     S++LFN+M +  +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 328 KPNDVTFVGVLHAC 341
             +      ++  C
Sbjct: 368 AIDQFALATLISGC 381



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 8/272 (2%)

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           N++  + +++ Y K   +  A  +FD M  R+V SW +++  + Q  +  + LE F   +
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                 PN      V+ +C +LG         G+  +     +  V +ALVDM+ +CG V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAK-YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           +++ ++F++I  P++    SM+ G AK YG+   +++ F +M  R +    V++  ++ A
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH-AIEYFEDMAERDV----VSWNMMIAA 244

Query: 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-AKSIQVDPDG 399
            S SG V E +  +  M+RK G+  D+  YT  +    R   L    +L AK I+  P  
Sbjct: 245 LSQSGRVREALGLVVEMHRK-GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 303

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
            P +   L+      G    A    N L + N
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRN 335



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 46/270 (17%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR-I 291
           LA  + +C S G L   +  HG +V  G      + + L+  Y  CG+++ + ++    I
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK----------------------- 328
             P+V+T+  M+ G AK G    + +LF+ M  R +                        
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 329 ---------PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
                    PN  TF  V+ +C   G  +   Q L  ++ K+    D    T +VDM  R
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL-GLFWKFDFWGDPDVETALVDMFVR 185

Query: 380 TGRLDEAYKLAKSIQVDPDGGPLLW---GTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
            G +D A +L   I+      P ++     L   ++L+G +D A+E    + E +    N
Sbjct: 186 CGYVDFASRLFSQIER-----PTIFCRNSMLAGYAKLYG-IDHAIEYFEDMAERDVVSWN 239

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
             +      + +G       L  EM R G+
Sbjct: 240 MMIA---ALSQSGRVREALGLVVEMHRKGV 266


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 212/612 (34%), Positives = 331/612 (54%), Gaps = 12/612 (1%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M   L +N  F  A  S     K     +    I  L  C  L  +      H E +K G
Sbjct: 175 MITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLG 234

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP-QIALLLF 116
              +    N L+  Y    +    +++F  MLE + VS+ +++    + G     A+ +F
Sbjct: 235 LDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVF 294

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
            +M+     PN  TF  ++   S L+      QIH  I  +  + +  + ++L+  YGK 
Sbjct: 295 LEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKS 354

Query: 177 NDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
            +++    +F  M   R+ VSW S+I  +  N    +A+++      Q   R +    A+
Sbjct: 355 GEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVW-LMMQRGQRLDCFTFAT 413

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V++ACA++  L  G   H   +R+  E + V+ SALVDMY+KCG ++Y+ + FN +   +
Sbjct: 414 VLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRN 473

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           + ++ SMI G A++G G  +L LF  M   G  P+ +TFVGVL ACSH GLVDEG ++  
Sbjct: 474 LYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFK 533

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA-SRLH 414
           SM   YG++P  +HY+C+VD+LGR G LD+       + + P+   L+W T+L A  R +
Sbjct: 534 SMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPN--ILIWRTVLGACCRGN 591

Query: 415 GR-VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           GR  ++   A+  L   + Q A  YV LSN YA  G+WE++   R  M+   + KE GCS
Sbjct: 592 GRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCS 651

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
           WV ++D  + F AG+        + + L+EL++K+++ GYV  +      D+E E +EE+
Sbjct: 652 WVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYV-PQIKFALYDLEPENKEEL 710

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           +  HSE+LA+AF +++   G+ IRIMKNLR+C DCH  FK IS +V+R  V+RD NRFHH
Sbjct: 711 LSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHH 769

Query: 594 FRNGSCSCGDFW 605
           F +G CSC D+W
Sbjct: 770 FEDGKCSCRDYW 781



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 193/366 (52%), Gaps = 11/366 (3%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H  +LK GF S+ F  N LIN YVR+     AR+LFDEM + N V++  L++GY   G P
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTH-IETFGFQYNLVVC 166
           + A  + ++M+     PN F F + I+AC  SML     G+Q+H + I T      + V 
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRR-KGRQVHGYAIRTGLNDAKVAVG 141

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + L++MY KC D+D AR VF LM  ++ VSW S+I    QN    +A++ +     ++  
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMR-KTGL 200

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            P+   L S +++CASLG ++ G+  HG  ++ G + +  V++ L+ +YA+   +    K
Sbjct: 201 MPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQK 260

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLG-RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           VF+ +     V++ ++I   A  G     ++++F EM+  G  PN VTF+ +L   + S 
Sbjct: 261 VFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLL--ATVSS 318

Query: 346 LVDEGIQH-LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           L    + H + ++  KY +  D      ++   G++G ++   ++   +    D   + W
Sbjct: 319 LSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRD--EVSW 376

Query: 405 GTLLSA 410
            +++S 
Sbjct: 377 NSMISG 382


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/557 (33%), Positives = 319/557 (57%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH   +++G +S T   N L++ Y      +   ++F  M + NVVS+T+++  Y   G 
Sbjct: 107 VHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGH 166

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
                 LFQ+M    + P+ F   + + A +    L  GK +H +    G +  L V ++
Sbjct: 167 FDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANA 226

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY KC  ++ AR +FD +  ++ +SW ++I  ++++   +EA  +F E   Q R  P
Sbjct: 227 LMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLR--P 284

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   +A ++ A ASL  L  G+  H   VR G   ++ VA+ALVDMY KCG++  + ++F
Sbjct: 285 NAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLF 344

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++N +++++T MI G   +G GR ++ LF +M   GI+P+  +F  +L+ACSHSGL D
Sbjct: 345 DMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRD 404

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG +  ++M  ++ I P  KHY C+VD+L  TG L EAY+  +++ ++PD    +W +LL
Sbjct: 405 EGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSS--IWVSLL 462

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
              R+H  V +A + +  + E   +    YV L+N YA A  WE V  L++++   G+ +
Sbjct: 463 RGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRE 522

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
             GCSW+E+R + + F+A N    +G  +   L ++ R+M+E G+   K     +  +D 
Sbjct: 523 NTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGH-DPKKKYALMGADDA 581

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             +E +  HS +LA+AFG++++ +G  IR+ KN R+C  CH+  K IS +  R+ ++RD 
Sbjct: 582 VHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDS 641

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFHHF  G CSC  +W
Sbjct: 642 NRFHHFEEGRCSCRGYW 658



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 189/385 (49%), Gaps = 6/385 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K GF +     N LI+ Y +  + + A  +FDEM + +++S+ S++ G  + G 
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF +M       +  T  +V+ AC        G  +H +    G      + ++
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY  C+D     ++F  M  +NVVSWT++I ++ +     +   +F+E   +   RP
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG-IRP 184

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   + S ++A A    L  GK  HG  +R+G E    VA+AL++MY KCG +  +  +F
Sbjct: 185 DVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIF 244

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + ++    +++ ++I G ++  L   +  LFNEM+ + ++PN VT   +L A +    ++
Sbjct: 245 DHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLE 303

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G + + +   + G + D      +VDM  + G L  A +L     +  +   + W  ++
Sbjct: 304 RG-REMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRL---FDMLTNKNLISWTIMI 359

Query: 409 SASRLHGRVDIAVEASNQLIESNQQ 433
           +   +HGR   A+    Q+  S  Q
Sbjct: 360 AGYGMHGRGRDAIALFEQMKGSGIQ 384



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
           + G  +H ++  +GF     VC++L+  Y K N ++ A  VFD M  R+++SW SII   
Sbjct: 1   MDGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGC 60

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
           A N    +A+E+F     + ++  +  +L SV+ AC        G V HG  VR+G    
Sbjct: 61  ASNGLYDKAVELFVRMWLEGQELDSTTLL-SVMPACVQSHYSFIGGVVHGYSVRTGLISE 119

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
             + +AL+DMY+ C     ++K+F  +   +VV++T+MI    + G       LF EM  
Sbjct: 120 TSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGL 179

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR---KYGIIPDAKHYTCVVDMLGRTG 381
            GI+P+       L A +     +E ++H  S++    + GI         +++M  + G
Sbjct: 180 EGIRPDVFAITSALDAFAG----NESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCG 235

Query: 382 RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441
            ++EA  +   +        + W TL+     + R ++A EA     E   Q+    VT+
Sbjct: 236 YMEEARFIFDHVTKKD---TISWNTLIGG---YSRSNLANEAFTLFNEMLLQLRPNAVTM 289

Query: 442 S 442
           +
Sbjct: 290 A 290



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 107/197 (54%), Gaps = 2/197 (1%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH   +++G        N L+  YV+    + AR +FD + + + +S+ +L+ GY    
Sbjct: 207 SVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSN 266

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               A  LF +ML  L  PN  T A ++ A + L+ L  G+++H +    G+  +  V +
Sbjct: 267 LANEAFTLFNEMLLQLR-PNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVAN 325

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY KC  +  ARR+FD++  +N++SWT +I  +  + +G +A+ +F +    S  +
Sbjct: 326 ALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMK-GSGIQ 384

Query: 228 PNQHMLASVINACASLG 244
           P+    ++++ AC+  G
Sbjct: 385 PDAGSFSAILYACSHSG 401


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 318/564 (56%), Gaps = 4/564 (0%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           LI +A SVH   ++ GF  N F    L++ Y +     VARQLF+ M E NVVS+ ++++
Sbjct: 137 LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVS 196

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY + G  + A+ LF  M    +  + +T  ++I A   +  L  G  IH  I   G++ 
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYEN 256

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + ++L+D+Y   N VD A RVF  M  ++V +WT ++   +       A++ F +  
Sbjct: 257 DKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKML 316

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                + +  +L  ++++C+  G L  G+  H + +++    N  V SA++DMYA CG++
Sbjct: 317 GIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNL 376

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + + F  +    VV + +MI G    G G  ++DLF +M   G+ P++ TFV VL+AC
Sbjct: 377 EDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYAC 436

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH+G+V EG+Q    M +    IP+ +HY CV+D+LGR G+LD AY    ++   PD   
Sbjct: 437 SHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFD- 495

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            ++ TLL A R+HG + +  E S ++ E     A  YV LSN YALAG WE V   R+ +
Sbjct: 496 -VYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASL 554

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +   + K+PG S +EI  + Y F AG     +  ++  +L+ L  K+K+ GYV   T ++
Sbjct: 555 RSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYV-PNTNVL 613

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             DV D+ +++I+  HSE++A+AFGL+    G  IRI KNLR C DCH   K +S +  R
Sbjct: 614 LQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGR 673

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
             V++D NRFH F++G CSC D+W
Sbjct: 674 VLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 206/395 (52%), Gaps = 12/395 (3%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L++ K L  L  +H++I+ SG   NTF  N L+N YV       A+Q+F      NVVS+
Sbjct: 31  LRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSW 90

Query: 97  TSLMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155
           T L++G         A+ +F++M +GN   PN  T ++V+ A + L  +   K +H    
Sbjct: 91  TILISGLAKNDCFVEAIDVFREMTMGNFK-PNAVTISSVLPAFANLGLIRIAKSVHCFWV 149

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
             GF+ N+ V ++LVDMY K   +  AR++F+ M  RNVVSW +I+  ++ +    EA++
Sbjct: 150 RGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAID 209

Query: 216 MFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           +   FN   R     + + + S+I A  S+G L  G   HG ++R+G E +  + +AL+D
Sbjct: 210 L---FNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMD 266

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDV 332
           +Y     V+ + +VF+ +    V  +T M+ G +       ++  FN+M+  + +K + +
Sbjct: 267 IYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSI 326

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
             +G+L +CSHSG + +G + + ++  K     +    + V+DM    G L++A +    
Sbjct: 327 VLMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYG 385

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
           +    +   + W  +++ + ++G    A++   Q+
Sbjct: 386 MG---EKDVVCWNAMIAGNGMNGYGTDAIDLFLQM 417



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 5/288 (1%)

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L DL   +QIH  I T G  +N  + +SL++ Y  C  +  A+++F    C+NVVSWT +
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTIL 93

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I   A+N    EA+++FRE       +PN   ++SV+ A A+LG +   K  H   VR G
Sbjct: 94  ISGLAKNDCFVEAIDVFREMT-MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG 152

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E N  V +ALVDMY+K G +  + ++F  +S  +VV++ +++ G + +G    ++DLFN
Sbjct: 153 FEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFN 212

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M  +G+  +  T + ++ A    G +  G   +     + G   D    T ++D+    
Sbjct: 213 LMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDIYVSH 271

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
             +D+A+++   + V       L  T  S+ R     D A++  N+++
Sbjct: 272 NCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGR---HWDRAIKHFNKML 316


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 216/596 (36%), Positives = 334/596 (56%), Gaps = 36/596 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
            +Q L ECK +  L  +H+  L+S     S T  L   I  +  L     A ++FD++  
Sbjct: 25  LLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDN 84

Query: 91  PNVVSYTSLM---AGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLIT 146
           PN   +  L+   A   ++   + A+LL+  ML  +  +P+  TF  V+KAC+ L  L  
Sbjct: 85  PNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFE 144

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GKQ H H+   GFQ ++ + +SL+  Y  C  ++ A+ VFD M  R++VSW ++I     
Sbjct: 145 GKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMI----- 199

Query: 207 NAQGHEALEMFREFN---------YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                +A  +F EF           Q    P+ + + SVINACA L  L  G  AH  ++
Sbjct: 200 -----DAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLL 254

Query: 258 R----SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
           R    S    + +V ++L+DMY KCGS++ + ++F  +    V ++ SMI+G A +G G 
Sbjct: 255 RNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGE 314

Query: 314 FSLDLFNEMI--SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
            +L+ F  MI  SR + PN +TFVGVL AC+H  +V+EG ++ D M  +Y I P  +HY 
Sbjct: 315 LALECFERMIRISRFV-PNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYG 373

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL-SASRLHGRVDIAVEASNQLIES 430
           C+VD+L R G +DEA +L  S+ + PD   ++W +LL S  + +  V+++   + Q++ES
Sbjct: 374 CLVDILARAGLIDEALELVASMPMKPDV--VIWRSLLDSCCKKNASVELSENIARQILES 431

Query: 431 NQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNA 489
            +   +  YV LS  YA A  W +V  +R  M   GI KEPGCS +E+   T+ F+AG+ 
Sbjct: 432 EEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDT 491

Query: 490 LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLIS 549
              +  E+  +L  +E ++   GY    +    VD  + ++ + + LHSERLA+A GL++
Sbjct: 492 SHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLN 551

Query: 550 IPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  G+ IRI KNLR+C DCH V  LIS+I   + +VRD  RFHHF++GSCSC D+W
Sbjct: 552 LKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/591 (34%), Positives = 325/591 (54%), Gaps = 15/591 (2%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR-- 82
           SS     H +  +      + L  +H+ +L++  + N+   +H ++   RL  + + R  
Sbjct: 6   SSSSGDDHLLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLS---RLALSLIPRDI 62

Query: 83  ----QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKA 137
               ++F + L P +    +++  +     P     LF+ +  N   P N  + +  +K 
Sbjct: 63  NYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKC 122

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C    DL+ G QIH  I + GF  + ++ ++L+D+Y  C +   A +VFD +  R+ VSW
Sbjct: 123 CIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSW 182

Query: 198 TSIIVAHAQNAQGHEALEMFREF--NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
             +   + +N +  + L +F +   +     +P+       + ACA+LG L  GK  H  
Sbjct: 183 NVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDF 242

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           +  +G      +++ LV MY++CGS++ + +VF  +   +VV++T++I G A  G G+ +
Sbjct: 243 IDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEA 302

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR-KYGIIPDAKHYTCVV 374
           ++ FNEM+  GI P + T  G+L ACSHSGLV EG+   D M   ++ I P+  HY CVV
Sbjct: 303 IEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVV 362

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
           D+LGR   LD+AY L KS+++ PD    +W TLL A R+HG V++     + LIE   + 
Sbjct: 363 DLLGRARLLDKAYSLIKSMEMKPDST--IWRTLLGACRVHGDVELGERVISHLIELKAEE 420

Query: 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
           A  YV L NTY+  G+WE V  LRS MK   IH +PGCS +E++   + F   +    R 
Sbjct: 421 AGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRK 480

Query: 495 SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
            E+  +L E+ +++K  GYV   T  +     +E +   +  HSE+LA+AFG++  P G 
Sbjct: 481 EEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGT 540

Query: 555 TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           TIR+ KNLR C DCH+  K +SD+ +R  +VRD +RFHHF+ GSCSC DFW
Sbjct: 541 TIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/601 (34%), Positives = 328/601 (54%), Gaps = 52/601 (8%)

Query: 37  LQECKHLISLA---SVHSEIL-KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C HL  L     +H+ +L  +  + N+F    L++ Y   K+ +  R +FD M    
Sbjct: 294 LPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRT 353

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIH 151
           +  + +++AGY+       A+ LF +M+  L + PN  T ++V+ AC      +  + IH
Sbjct: 354 IAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIH 413

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA------ 205
           + +  +GF+ +  V ++L+DMY +   ++ AR +F  M  +++VSW ++I  +       
Sbjct: 414 SCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHD 473

Query: 206 ---------QNAQGHEALEMFREF--NYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
                    Q  Q    +  F ++  N     +PN   L +V+  CA+L  L  GK  H 
Sbjct: 474 DALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHA 533

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
             V+     +  V SALVDMYAKCG +N S  VF ++S  +V+T+  +I+    +G G  
Sbjct: 534 YAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEE 593

Query: 315 SLDLFNEMISRG-----IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           +L LF  M+  G     I+PN+VT++ +  + SHSG+VDEG+    +M  K+GI P + H
Sbjct: 594 ALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDH 653

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSI-----QVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
           Y C+VD+LGR+G+++EAY L K++     +VD       W +LL A ++H  ++I   A+
Sbjct: 654 YACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDA------WSSLLGACKIHQNLEIGEIAA 707

Query: 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAF 484
             L   +  V + Y T  +             L  +MK  G+ KEPGCSW+E  D+ + F
Sbjct: 708 KNLFVLDPNVLD-YGTKQSM------------LGRKMKEKGVRKEPGCSWIEHGDEVHKF 754

Query: 485 YAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALA 544
            AG+    +  EV   L  L  +MK+ GYV   T  V  +V +E +E ++  HSERLA+A
Sbjct: 755 LAGDVSHPQSKEVHEYLETLSLRMKKEGYVP-DTSCVLHNVGEEEKETMLCGHSERLAIA 813

Query: 545 FGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           FGL++   G TIR+ KNLR+C DCH   K IS IV+R+ ++RDV RFHHFRNG+CSCGD+
Sbjct: 814 FGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDY 873

Query: 605 W 605
           W
Sbjct: 874 W 874



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 188/378 (49%), Gaps = 13/378 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ + K G    T   N L+N Y +      AR++FDE+   + VS+ S++       +
Sbjct: 107 LHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEE 166

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-LITGKQIHTHIETFGFQYNLVVCS 167
            ++A+ LF+ ML   V P  FT  +V  ACS L + L+ GKQ+H  +   G  +     +
Sbjct: 167 WELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNN 225

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LV MY K   V  A+ +FD+   +++VSW +II + +QN +  EAL ++     QS  R
Sbjct: 226 ALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEAL-LYLHVMLQSGVR 284

Query: 228 PNQHMLASVINACASLGRLVSGKVAHG-VVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           PN   LASV+ AC+ L  L  GK  H  V++ +    N  V  ALVDMY  C        
Sbjct: 285 PNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRL 344

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIKPNDVTFVGVLHAC--SH 343
           VF+ +   ++  + +MI G  +      +++LF EM+   G+ PN VT   VL AC    
Sbjct: 345 VFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCE 404

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           S L  EGI    S   K+G   D      ++DM  R GR++ A  +  S+        + 
Sbjct: 405 SFLDKEGIH---SCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMN---RKDIVS 458

Query: 404 WGTLLSASRLHGRVDIAV 421
           W T+++   + GR D A+
Sbjct: 459 WNTMITGYVVCGRHDDAL 476



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 207/421 (49%), Gaps = 29/421 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ +L++G    TFT N L+  Y +L +   A+ LFD   + ++VS+ ++++      +
Sbjct: 209 VHAFVLRNGDW-RTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDR 267

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI-ETFGFQYNLVVCS 167
            + ALL    ML + V PN  T A+V+ ACS L  L  GK+IH  +        N  V  
Sbjct: 268 FEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGC 327

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +LVDMY  C   +  R VFD M  R +  W ++I  + +N   +EA+E+F E  ++    
Sbjct: 328 ALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLS 387

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           PN   L+SV+ AC      +  +  H  VV+ G E +  V +AL+DMY++ G +  +  +
Sbjct: 388 PNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSI 447

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-------------------IK 328
           F  ++   +V++ +MI G    G    +L+L ++M  RG                   +K
Sbjct: 448 FGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDM-QRGQAEHRINTFDDYEDNKNFPLK 506

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN VT + VL  C+    + +G + + +   K  +  D    + +VDM  + G L+ +  
Sbjct: 507 PNSVTLMTVLPGCAALAALGKG-KEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRT 565

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE---SNQQVANAYVTLSNTY 445
           + + + V      + W  L+ A  +HG+ + A++   +++E   +N+++    VT    +
Sbjct: 566 VFEQMSVR---NVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIF 622

Query: 446 A 446
           A
Sbjct: 623 A 623



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 3/233 (1%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           A+  +  M+   V P+ F F  V+KA + + DL  GKQ+H H+  FG      V +SLV+
Sbjct: 69  AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVN 128

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MYGKC D+D ARRVFD +  R+ VSW S+I A  +  +   A+ +FR    ++   P   
Sbjct: 129 MYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVG-PTSF 187

Query: 232 MLASVINACASL-GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
            L SV +AC++L   L+ GK  H  V+R+G ++     +ALV MYAK G V  +  +F+ 
Sbjct: 188 TLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDV 246

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
             +  +V++ ++I   ++      +L   + M+  G++PN VT   VL ACSH
Sbjct: 247 FDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSH 299


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/588 (35%), Positives = 337/588 (57%), Gaps = 25/588 (4%)

Query: 38  QECKHLISLASVHSEILKSGFLSNTFTL---NHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           + C  +  L  +H+  L++ +     TL     ++           A ++FD +   +  
Sbjct: 47  ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSF 106

Query: 95  SYTSLM-AGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            + +L+ A   ++ + + A +L++KML      P++ TF  V+KAC+ +     GKQ+H 
Sbjct: 107 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHC 166

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF  ++ V + L+ +YG C  +D AR+VFD M  R++VSW S+I A  +  +   
Sbjct: 167 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 226

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN---DV-VA 268
           AL++FRE   Q    P+ + + SV++ACA LG L  G  AH  ++R  C+ +   DV V 
Sbjct: 227 ALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK-CDVDVAMDVLVK 283

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--G 326
           ++L++MY KCGS+  +++VF  +    + ++ +MI+G A +G    +++ F+ M+ +   
Sbjct: 284 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 343

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++PN VTFVG+L AC+H G V++G Q+ D M R Y I P  +HY C+VD++ R G + EA
Sbjct: 344 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 403

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHG-RVDIAVEASNQLI-------ESNQQVANAY 438
             +  S+ + PD   ++W +LL A    G  V+++ E +  +I        SN   + AY
Sbjct: 404 IDMVMSMPMKPDA--VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 461

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LS  YA A  W +V  +R  M   GI KEPGCS +EI   ++ F+AG+    +  ++ 
Sbjct: 462 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 521

Query: 499 SLLRELERKMKERGYVGGKTGLVFVD-VEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             L+ ++ +++  GY+  ++    VD   D ++E  + LHSERLA+AFGLI++P    IR
Sbjct: 522 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 581

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I KNLR+C DCH+V KLIS +   + +VRD  RFHHF++GSCSC D+W
Sbjct: 582 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 311/548 (56%), Gaps = 16/548 (2%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            NT + N ++ C+        AR  FD M   +V S+ ++++    +G    A  LF  M
Sbjct: 102 PNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAM 161

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF--GFQYNLVVCSSLVDMYGKCN 177
                 P +      +   +M++  +    +   +E F      +++  ++++  Y K  
Sbjct: 162 ------PEK----NCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFG 211

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            V+ A R+F  M  R +V+W ++I  + +N +  + L +FR    ++  +PN   L SV+
Sbjct: 212 RVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM-LETGVKPNALSLTSVL 270

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
             C++L  L  GK  H +V +     +    ++LV MY+KCG +  + ++F +I    VV
Sbjct: 271 LGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVV 330

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            + +MI G A++G G+ +L LF+EM   G+KP+ +TFV VL AC+H+GLVD G+Q+ ++M
Sbjct: 331 CWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTM 390

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R +GI    +HY C+VD+LGR G+L EA  L KS+   P   P ++GTLL A R+H  +
Sbjct: 391 RRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPH--PAIYGTLLGACRIHKNL 448

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++A  A+  L+E +  +A  YV L+N YA    W++V S+R  MK   + K PG SW+EI
Sbjct: 449 NLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEI 508

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
               + F + + L    + +   L++LE+KMK  GYV      V  DV +E +E+++  H
Sbjct: 509 NSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYV-PDLEFVLHDVGEELKEQLLLWH 567

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AFGL+ +P G+ IR+ KNLR+C DCH   K IS I  R+ +VRD  RFHHF++G
Sbjct: 568 SEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDG 627

Query: 598 SCSCGDFW 605
            CSC D+W
Sbjct: 628 FCSCRDYW 635



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 3/254 (1%)

Query: 52  EILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           E   +  + +  T   +I  Y++  + ++A +LF EM    +V++ +++AGY+  G+ + 
Sbjct: 187 ECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAED 246

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
            L LF+ ML   V PN  +  +V+  CS L+ L  GKQ+H  +       +    +SLV 
Sbjct: 247 GLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVS 306

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC D+  A  +F  +  ++VV W ++I  +AQ+  G +AL +F E   +   +P+  
Sbjct: 307 MYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGL-KPDWI 365

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYS-DKVFN 289
              +V+ AC   G +  G      + R  G E      + +VD+  + G ++ + D + +
Sbjct: 366 TFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKS 425

Query: 290 RISNPSVVTYTSMI 303
               P    Y +++
Sbjct: 426 MPFKPHPAIYGTLL 439



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 137/323 (42%), Gaps = 67/323 (20%)

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           HTH   F    N++  + L+  Y +C D+D A RVF+ M  ++ V+W SI+ A A+   G
Sbjct: 30  HTHQHEFN-NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKP-G 87

Query: 211 HEALEMFREFNYQSRDRPN----QHMLA---------------------------SVINA 239
           H   E  R+  ++   +PN      MLA                           ++I+A
Sbjct: 88  H--FEYARQL-FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISA 144

Query: 240 ---------------------CASLGRLVSGKVAHG-----VVVRSGCEFNDVVA-SALV 272
                                C S   +VSG VA G     V          V+  +A++
Sbjct: 145 LAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMI 204

Query: 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332
             Y K G V  ++++F  +S  ++VT+ +MI G  + G     L LF  M+  G+KPN +
Sbjct: 205 TGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNAL 264

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           +   VL  CS+   +  G Q +  +  K  +  D    T +V M  + G L +A++L   
Sbjct: 265 SLTSVLLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELF-- 321

Query: 393 IQVDPDGGPLLWGTLLSASRLHG 415
           IQ+ P    + W  ++S    HG
Sbjct: 322 IQI-PRKDVVCWNAMISGYAQHG 343



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 40  CKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C +L +L     VH  + K    S+T     L++ Y +    + A +LF ++   +VV +
Sbjct: 273 CSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCW 332

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHTHIE 155
            ++++GY   G  + AL LF +M    + P+  TF  V+ AC+    +  G Q  +T   
Sbjct: 333 NAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRR 392

Query: 156 TFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            FG +      + +VD+ G+   +  A
Sbjct: 393 DFGIETKPEHYACMVDLLGRAGKLSEA 419


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 329/621 (52%), Gaps = 68/621 (10%)

Query: 49  VHSEILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEM------------------- 88
           +H+  L++   S   F  N LI+ Y+RL     AR+ FDE+                   
Sbjct: 128 LHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMG 187

Query: 89  ----------LEP--NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136
                       P  +V+S+TSL+A Y    + + A+  F+ ML + + P+E T   V+ 
Sbjct: 188 MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLS 247

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND------------------ 178
           AC+ L DL  G+ +H  +E  G   +  +  +L+DMY KC D                  
Sbjct: 248 ACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ 307

Query: 179 --------------VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
                         VD AR +FD M  R+++++ S++  +  + Q  EAL +F       
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             R +   + +++ ACASLG L  G+  H  + +   E +  + +AL+DMY KCG V+ +
Sbjct: 368 L-RVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             VF R+    V T+T+MI G A  G+G+ +L+ F +M   G +PN V+++ VL ACSHS
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
            L++EG  + D M   Y I P  +HY C++D+LGR+G LDEA  L K++ + P+   ++W
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNA--VIW 544

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            ++LSA R+H  +D+A  A+  L++        YV L N Y  + +WEN   +R  M+  
Sbjct: 545 ASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEER 604

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            + K  G S + +  Q + F   +    R  E++++L E+  ++K  GY    T  + VD
Sbjct: 605 QVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGY-SPLTSQITVD 663

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           V++E +E+ +  HSE+LA+AFGLI++   + + I KNLR+C DCH   KLIS +  R+ +
Sbjct: 664 VDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREII 723

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD +RFHHFR G+CSC DFW
Sbjct: 724 VRDRSRFHHFREGTCSCNDFW 744



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 170/413 (41%), Gaps = 75/413 (18%)

Query: 47  ASVHSEILKSGFL-----SNTFTLNHLINCY-VRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           A +H+ +  SG L     S    LN L+NC        + A  LFD M     +  T+L 
Sbjct: 16  AELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALR 75

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA---DLITGKQIHTH-IET 156
           A       P    LLF++M    V P+ FTF  + K  S  +    L+    +H   + T
Sbjct: 76  ACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRT 135

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-------------------- 196
                   V +SL+ MY +      ARR FD +  ++ V+                    
Sbjct: 136 MLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLL 195

Query: 197 -----------WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
                      WTS+I A+++  +  EA+  F+         P++  + +V++ACA L  
Sbjct: 196 LSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG-IAPDEVTVIAVLSACAKLKD 254

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN---RISNPS------- 295
           L  G+  H +V   G   ++ +  AL+DMYAKCG   ++ +VF+   R   P        
Sbjct: 255 LELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIID 314

Query: 296 ----------------------VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
                                 ++T+ SM+ G    G  R +L LF  M    ++ ++ T
Sbjct: 315 GYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFT 374

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
            V +L AC+  G + +G + L +   +  +  D    T ++DM  + GR+DEA
Sbjct: 375 VVNLLTACASLGALQQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/588 (35%), Positives = 337/588 (57%), Gaps = 25/588 (4%)

Query: 38  QECKHLISLASVHSEILKSGFLSNTFTL---NHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           + C  +  L  +H+  L++ +     TL     ++           A ++FD +   +  
Sbjct: 56  ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSF 115

Query: 95  SYTSLM-AGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            + +L+ A   ++ + + A +L++KML      P++ TF  V+KAC+ +     GKQ+H 
Sbjct: 116 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHC 175

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF  ++ V + L+ +YG C  +D AR+VFD M  R++VSW S+I A  +  +   
Sbjct: 176 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 235

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN---DV-VA 268
           AL++FRE   Q    P+ + + SV++ACA LG L  G  AH  ++R  C+ +   DV V 
Sbjct: 236 ALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK-CDVDVAMDVLVK 292

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR--G 326
           ++L++MY KCGS+  +++VF  +    + ++ +MI+G A +G    +++ F+ M+ +   
Sbjct: 293 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           ++PN VTFVG+L AC+H G V++G Q+ D M R Y I P  +HY C+VD++ R G + EA
Sbjct: 353 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 412

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHG-RVDIAVEASNQLI-------ESNQQVANAY 438
             +  S+ + PD   ++W +LL A    G  V+++ E +  +I        SN   + AY
Sbjct: 413 IDMVMSMPMKPDA--VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 470

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LS  YA A  W +V  +R  M   GI KEPGCS +EI   ++ F+AG+    +  ++ 
Sbjct: 471 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 530

Query: 499 SLLRELERKMKERGYVGGKTGLVFVD-VEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             L+ ++ +++  GY+  ++    VD   D ++E  + LHSERLA+AFGLI++P    IR
Sbjct: 531 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 590

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I KNLR+C DCH+V KLIS +   + +VRD  RFHHF++GSCSC D+W
Sbjct: 591 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 307/560 (54%), Gaps = 11/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS++++ GF +N      + N YV+      A    ++M   N V+ T LM GY    +
Sbjct: 214 IHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAAR 273

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + ALLLF KM+   V  + F F+ ++KAC+ L DL TGKQIH++    G +  + V + 
Sbjct: 274 NRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTP 333

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD Y KC   + AR+ F+ +   N  SW+++I  + Q+ Q   ALE+F+    +     
Sbjct: 334 LVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGV-LL 392

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N  +  ++  AC+++  L+ G   H   ++ G        SA++ MY+KCG V+Y+ + F
Sbjct: 393 NSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAF 452

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I  P  V +T++I   A +G    +L LF EM   G++PN VTF+G+L+ACSHSGLV 
Sbjct: 453 LTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVK 512

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG + LDSM  +YG+ P   HY C++D+  R G L EA ++ +S+  +PD   + W +LL
Sbjct: 513 EGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPD--VMSWKSLL 570

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
                H  ++I + A++ +   +   +  YV + N YALAG+W+     R  M    + K
Sbjct: 571 GGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRK 630

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE---RKMKERGYVGGKTGLVFVDV 525
           E  CSW+ ++ + + F  G+    +  ++ S L+EL    +K KER          F + 
Sbjct: 631 EVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTE- 689

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
               R+E +  HSERLA+A+GLI       I + KN R C+DCHD  K +S +  R+ VV
Sbjct: 690 ----RKEQLLDHSERLAIAYGLICTAADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVV 745

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD NRFHH  +G CSC D+W
Sbjct: 746 RDGNRFHHINSGECSCRDYW 765



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           SN F  N ++  Y   K    A + FD++++ ++ S++++++ Y   G+   A+ LF +M
Sbjct: 124 SNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRM 183

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
           L   + PN   F+T+I + +  + L  GKQIH+ +   GF  N+ + + + +MY KC  +
Sbjct: 184 LDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWL 243

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
           DGA    + M  +N V+ T ++V + + A+  +AL +F +   +  +  +  + + ++ A
Sbjct: 244 DGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVEL-DGFVFSIILKA 302

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           CA+LG L +GK  H   ++ G E    V + LVD Y KC     + + F  I  P+  ++
Sbjct: 303 CAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSW 362

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SGLVDEGIQHLDSMY 358
           +++I G  + G    +L++F  + S+G+  N   +  +  ACS  S L+     H D++ 
Sbjct: 363 SALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAI- 421

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
            K G++      + ++ M  + G++D A++   +I   PD   + W  ++ A   HG+
Sbjct: 422 -KKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTID-KPD--TVAWTAIICAHAYHGK 475



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP 91
           +  Q       LI  A +H++ +K G ++     + +I+ Y +  +   A Q F  + +P
Sbjct: 399 NIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKP 458

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           + V++T+++  +   G+   AL LF++M G+ V PN  TF  ++ ACS    +  GK+I 
Sbjct: 459 DTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKIL 518

Query: 152 THI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
             + + +G    +   + ++D+Y +   +  A  V   +    +V+SW S++
Sbjct: 519 DSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLL 570


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/568 (34%), Positives = 317/568 (55%), Gaps = 11/568 (1%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           K +  +  V + ++ SG   + +  N ++  +V+      AR+LFDEM E N++S+ +++
Sbjct: 145 KSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTII 204

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
            G ++ G    A  LF  M  +        F T+I+A + L  +  G+Q+H+     G  
Sbjct: 205 GGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVG 264

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            ++ V  +L+DMY KC  ++ A+ VFD M  +  V W SII  +A +    EAL M+   
Sbjct: 265 GDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMY--- 321

Query: 221 NYQSRD---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
            Y+ RD   + +    + +I  CA L  L   K AH  +VR G   + V  +ALVD+Y+K
Sbjct: 322 -YEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSK 380

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
            G +  +  VF+ + + +V+++ ++I G   +G G  ++++F  M+  G+ PN VTF+ V
Sbjct: 381 WGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L ACS+SGL D G +  +SM R + I P A HY C++++LGR G LDEA+ L K     P
Sbjct: 441 LSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKP 500

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
                +W  LL+A R+H   ++   A+ +L     +  + YV L N Y  +G  E   ++
Sbjct: 501 TVN--MWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAV 558

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
              +KR G+   P CSW+EI+ Q Y F +G+    +  E+   L EL  ++ + GYV  +
Sbjct: 559 IQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYV-PQ 617

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
              +  DV DE  E ++  HSE+LA+AFGLI+      ++I+++ R+C DCH   KLI+ 
Sbjct: 618 DKFLLPDV-DEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIAL 676

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  R+ VVRD +RFHHF++GSCSCGD+W
Sbjct: 677 VTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 5/299 (1%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  ++ AC  L  +   K++  ++   G   +  + + ++ M+ KC  +  ARR+FD M
Sbjct: 133 TYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEM 192

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             +N++SW +II          EA  +F    +Q        M  ++I A A LG + +G
Sbjct: 193 PEKNILSWNTIIGGLVDAGDYFEAFRLFL-MMWQDFSDAGSRMFVTMIRASAGLGLIFAG 251

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  H   +++G   +  VA AL+DMY+KCGS+  +  VF+++   + V + S+I G A +
Sbjct: 252 RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALH 311

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G    +L ++ EM   G+K ++ TF  ++  C+    ++   Q    + R +G   D   
Sbjct: 312 GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVR-HGFGLDIVA 370

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            T +VD+  + GR+++A  +     + P    + W  L++    HGR   AVE   +++
Sbjct: 371 NTALVDLYSKWGRIEDAKHV---FDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 104/226 (46%), Gaps = 4/226 (1%)

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           HEALE+F           +     ++++AC  L  +   K     ++ SG + ++ + + 
Sbjct: 112 HEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNR 171

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           ++ M+ KCG +  + ++F+ +   +++++ ++I G    G    +  LF  M        
Sbjct: 172 VLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAG 231

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
              FV ++ A +  GL+  G Q L S   K G+  D      ++DM  + G +++A  + 
Sbjct: 232 SRMFVTMIRASAGLGLIFAGRQ-LHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVF 290

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             +   P+   + W ++++   LHG  + A+    ++ +S  ++ N
Sbjct: 291 DQM---PEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 227/597 (38%), Positives = 333/597 (55%), Gaps = 17/597 (2%)

Query: 18   LTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVR 74
            L RQN     +  A  I  L  C  L  LA+   +H + +K G   +T   N L+  Y  
Sbjct: 474  LMRQNSIGPSNFAA--ISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGE 531

Query: 75   LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI--ALLLFQKMLGNLVWPNEFTFA 132
              +     ++F+ M   +VVS+ S+M G +   Q  I  ++ +F  M+ + + PN+ TF 
Sbjct: 532  CGRMSECWEIFNSMSAHDVVSWNSIM-GVMASSQAPITESVQVFSNMMKSGLVPNKVTFV 590

Query: 133  TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GC 191
              + A + L+ L  GKQIH+ +   G   +  V ++L+  Y K  DVD   R+F  M G 
Sbjct: 591  NFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGR 650

Query: 192  RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
            R+ +SW S+I  +  N    EA++        S    +    + V+NACAS+  L  G  
Sbjct: 651  RDAISWNSMISGYIYNGHLQEAMDCVC-LMMHSEQMMDHCTFSIVLNACASVAALERGME 709

Query: 252  AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
             H   +RS  E + VV SALVDMY+KCG ++Y+ KVF+ +S  +  ++ SMI G A++GL
Sbjct: 710  MHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGL 769

Query: 312  GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
            GR +L++F EM   G  P+ VTFV VL ACSH+GLV+ G+ + + M   YGI+P  +HY+
Sbjct: 770  GRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYS 828

Query: 372  CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA---SRLHGRVDIAVEASNQLI 428
            CV+D+LGR G LD+  +  K + + P+   L+W T+L A   S+   ++D+  EAS  L+
Sbjct: 829  CVIDLLGRAGELDKIQEYMKRMPMKPN--TLIWRTVLVACQQSKHRAKIDLGTEASRMLL 886

Query: 429  ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN 488
            E   Q    YV  S  +A  G WE+    R+ MK   + KE G SWV + D  + F AG+
Sbjct: 887  ELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGD 946

Query: 489  ALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLI 548
                   E+   L  L +K++  GYV   T  V  D+E+E +EE++  HSE+LA+AF L 
Sbjct: 947  RSHPNTKEIYEKLNFLIQKIRNAGYV-PLTEYVLHDLEEENKEELLRYHSEKLAVAFVLT 1005

Query: 549  SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
                G  IRIMKNLR+C DCH  F+ IS IV R  ++RD  RFHHF++G CSCGD+W
Sbjct: 1006 RSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 205/429 (47%), Gaps = 39/429 (9%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           S  S+H E++K G   + F  NHL+N Y +  +   AR++FD M   N VS+T L++G++
Sbjct: 83  SPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHV 142

Query: 105 NMGQPQIALLLFQKML--GNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGFQ 160
             G P+ A  LF+ ML  G    P  FTF +V++AC  S    L    Q+H  +    F 
Sbjct: 143 LSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFT 202

Query: 161 YNLVVCSSLVDMYGKCNDVDG--ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
            N  VC++L+ MYG C+      A+RVFD    R++++W +++  +A+         +FR
Sbjct: 203 SNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFR 262

Query: 219 EFNYQSRD---RPNQHMLASVINAC----ASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
              Y       RP +H   S+I A      SLG L    V    V++SGC  +  V SAL
Sbjct: 263 AMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVR---VLKSGCSSDLYVGSAL 319

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           V  +A+ G ++ +  ++  +   + VT   +I G  K   G  + ++F  M +R     +
Sbjct: 320 VSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF--MGARDSAAVN 377

Query: 332 V-TFVGVLHACSHSGLVDEGIQ----------HLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           V T+V +L A +     ++G++              +YRK  +         +V+M  + 
Sbjct: 378 VDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAV------SNGLVNMYAKC 431

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G +D+A ++ + ++       + W T+++A   +G  + A+  +  L+  N    + +  
Sbjct: 432 GAIDKACRVFQLMEARDR---ISWNTIITALDQNGYCEAAM-MNYCLMRQNSIGPSNFAA 487

Query: 441 LSNTYALAG 449
           +S   + AG
Sbjct: 488 ISGLSSCAG 496



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 190/387 (49%), Gaps = 8/387 (2%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ +L++G +     + N L+N Y +      A ++F  M   + +S+ +++      G
Sbjct: 404 VHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNG 463

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + A++ +  M  N + P+ F   + + +C+ L  L  G+Q+H     +G   +  V +
Sbjct: 464 YCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSN 523

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII-VAHAQNAQGHEALEMFREFNYQSRD 226
           +LV MYG+C  +     +F+ M   +VVSW SI+ V  +  A   E++++F     +S  
Sbjct: 524 ALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNM-MKSGL 582

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
            PN+    + + A   L  L  GK  H V+++ G   ++ V +AL+  YAK G V+  ++
Sbjct: 583 VPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCER 642

Query: 287 VFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +F+R+S     +++ SMI G    G  + ++D    M+      +  TF  VL+AC+   
Sbjct: 643 LFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVA 702

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            ++ G++ + +   +  +  D    + +VDM  + GR+D A K+  S+    +     W 
Sbjct: 703 ALERGME-MHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNE---FSWN 758

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQ 432
           +++S    HG    A+E   ++ ES +
Sbjct: 759 SMISGYARHGLGRKALEIFEEMQESGE 785


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/519 (37%), Positives = 303/519 (58%), Gaps = 5/519 (0%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M  P+ VS+T+L+A Y++ G    A+ + ++   + + P+ FT   V+ AC+ +ADL TG
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 148 KQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           + +     +  G   ++ V ++ +D+Y KC +++ AR VFD M  R+ V+W +++  +A 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    EAL++F     +   +P+ + +   ++AC  LG L  G+ A G+V       N V
Sbjct: 121 NGHPREALDLFFAMQMEGA-KPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPV 179

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
           + +AL+DMYAKCGS + +  VF ++    ++ + +MI+G    G  + +  L  +M   G
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSG 239

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386
           +K ND TF+G+L +C+H+GLV++G Q+  +M   Y I P  +HY C+VD+  R G L+EA
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEA 299

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           ++L   + +  +   ++WG LL   ++H   D+A  A  QLI      +  YV LSN Y+
Sbjct: 300 HQLIGDMPMLANA--VVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYS 357

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            +G WE+   LR EMK  GI K P  SWVE+  + + FY G+       ++ + L EL  
Sbjct: 358 NSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGM 417

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +MK  GY    T +V  DVE+E +E  +  HSE++A+AF LI+   G TIR+ KNLR+C 
Sbjct: 418 EMKAMGY-EPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCT 476

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           DCH   KLIS I  R+ VVRD NRFH FR+G CSC D+W
Sbjct: 477 DCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L N      LI+ Y +   T  A  +F +MLE +++ + +++ G    G  +IA  L  +
Sbjct: 175 LGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQ 234

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQ-IHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           M  + V  N+ TF  ++ +C+    +  G+Q  H     +     +     +VD++ +  
Sbjct: 235 MKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAG 294

Query: 178 DVDGARRVF-DLMGCRNVVSWTSII 201
            ++ A ++  D+    N V W +++
Sbjct: 295 LLEEAHQLIGDMPMLANAVVWGALL 319


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 319/577 (55%), Gaps = 40/577 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  T   ++  Y ++   + AR+ FDEM E +VVS+ ++ + Y     P+ AL LF +ML
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P++ T+   I +CS + D      I   I+      N  V ++L+DM+ K  +++
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 181 GARRVFDLMGC--------------------------------RNVVSWTSIIVAHAQNA 208
            AR +FD +G                                 R+VVSW S+I  +AQN 
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +   ++E+F+E       +P++  +ASV++AC  +G L        +V     +      
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++L+ MY+KCGSV  + ++F  +    VV++ ++I G A  G G+ ++ L   M   GI+
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VT++GVL ACSH+GL++EG     S+       P   HY C+VD+LGR G LDEA  
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKM 545

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           L +S+ + P  G  ++G+LL+ASR+H RV +   A+++L E   Q    YV LSN YA  
Sbjct: 546 LIQSMPMKPHAG--VYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASF 603

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G WE+V  +R  MK+ G+ K  G SWVE + Q + F  G+   E+  ++  LL ELERKM
Sbjct: 604 GRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKM 663

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  G+V  K+     DVE+E +EE++G HSE+LA+ F L+    G TIR++KNLR+C DC
Sbjct: 664 KRVGFVADKS-CALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDC 722

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K+IS +  R+ VVRD NRFH F  G CSC D+W
Sbjct: 723 HTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 10/271 (3%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           G   N  T N +I+ Y R+ K  +AR+LFD M + +VVS+ S++AGY   G+  +++ LF
Sbjct: 320 GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELF 379

Query: 117 QKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           ++M+  + + P+E T A+V+ AC  +  L     +   +     +  +   +SL+ MY K
Sbjct: 380 KEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSK 439

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C  V  A R+F  MG R+VVS+ ++I   A N  G EA+++      +  + P+      
Sbjct: 440 CGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE-PDHVTYIG 498

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NP 294
           V+ AC+  G L  GK     +     +      + +VD+  + G ++ +  +   +   P
Sbjct: 499 VLTACSHAGLLNEGKNVFKSIQAPTVDH----YACMVDLLGRAGELDEAKMLIQSMPMKP 554

Query: 295 SVVTYTSMIVGA---AKYGLGRFSLDLFNEM 322
               Y S++  +    + GLG  +     E+
Sbjct: 555 HAGVYGSLLNASRIHKRVGLGELAASKLFEL 585



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           SG + H  V++ G   +  + +A++DMYAK G V+ +  +F +++  ++  + SMI G  
Sbjct: 113 SGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCW 172

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           K G    ++ LFN M +R I    +T+  ++   +  G ++   ++ D M
Sbjct: 173 KSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEM 218


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/548 (37%), Positives = 309/548 (56%), Gaps = 13/548 (2%)

Query: 64  TLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-N 122
           T N ++N Y    +   A +LF +M   +V+S+TS++ G    G+   AL  F+ M+G +
Sbjct: 187 TWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFS 246

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL--VVCSSLVDMYGKCNDVD 180
            V  +  T    + A + + D   G QIH  +  FGF   L   V +SLV  Y  C  + 
Sbjct: 247 GVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMG 306

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---FNYQSRDRPNQHMLASVI 237
            A +VF    C+NVV WT+++     N +  EALE+F E   FN      PN+    S +
Sbjct: 307 DACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVV----PNESSFTSAL 362

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           N+C  L  L  G+V H   ++ G E      ++LV MY+KCG +  +  VF  I   +VV
Sbjct: 363 NSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVV 422

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++ S+IVG A++G G ++L LF EM+  G++ +++T  G+L ACS SG++ +        
Sbjct: 423 SWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYF 482

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            RK  +    +HY C+VD+LGR G ++EA  LA S+ V+ +   ++W  LLSA R+H  +
Sbjct: 483 ARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANS--MVWLVLLSACRVHSSL 540

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           D+A  A+ ++ E     + AYV LSN YA +  W  V  +R +MK  GI K+PG SW+ +
Sbjct: 541 DVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITL 600

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
           +   + F + +       E+   L  L  K++E GY+  +      DVE E  EE++  H
Sbjct: 601 KGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQ-FALHDVEIEQNEEMLSYH 659

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SERLA+AFGL+S  +G TI IMKNLR+C DCH    L++ IV R+ VVRD +RFHHF+NG
Sbjct: 660 SERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKNG 719

Query: 598 SCSCGDFW 605
            CSCGD+W
Sbjct: 720 ICSCGDYW 727



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 163/367 (44%), Gaps = 65/367 (17%)

Query: 55  KSGFLSNTFT-LNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113
           KS   S  FT LNHL N     +K   AR +F+++  P+V  YT L+  Y +      A+
Sbjct: 54  KSSSTSLNFTFLNHLKN-----QKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAI 108

Query: 114 LLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173
            LF ++  N    +  ++ +VIKA  +  D +T  ++   +     Q N +  ++++  +
Sbjct: 109 NLFNQIPSNT--KDTISWNSVIKASIICNDFVTAVKLFDEMP----QRNSISWTTIIHGF 162

Query: 174 -------------------------------GKCND--VDGARRVFDLMGCRNVVSWTSI 200
                                          G CN+  V+ A R+F  M  R+V+SWTSI
Sbjct: 163 LSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSI 222

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           IV   +N + ++AL  F+     S    +   L   ++A A +    +G   H  + + G
Sbjct: 223 IVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFG 282

Query: 261 --CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
             C  ++ V+++LV  YA C  +  + KVF      +VV +T+++ G         +L++
Sbjct: 283 FCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEV 342

Query: 319 FNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQH-------LDSMYRK 360
           F+EM+   + PN+ +F   L++C            H+  +  G+++       L  MY K
Sbjct: 343 FSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSK 402

Query: 361 YGIIPDA 367
            G I DA
Sbjct: 403 CGFIGDA 409



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 33/286 (11%)

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP--NQHM 232
           K   +D AR VF+ +   +V  +T +++A+A N   HEA+ +F +    ++D    N  +
Sbjct: 69  KNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVI 128

Query: 233 LASVI----------------NACASLGRLVSGKVAHGVVVRSGCEFN-------DVVA- 268
            AS+I                    S   ++ G ++ G V  +   FN       DV   
Sbjct: 129 KASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATW 188

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGI 327
           +A+V+ Y   G VN + ++F ++ +  V+++TS+IVG  + G    +L  F  M+   G+
Sbjct: 189 NAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGV 248

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY--TCVVDMLGRTGRLDE 385
             +  T V  L A +       GIQ    M+ K+G       +    +V       R+ +
Sbjct: 249 GISSTTLVCGLSAAAKILDFYAGIQIHCCMF-KFGFCCGLDEFVSASLVTFYASCKRMGD 307

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           A K+            ++W  LL+   L+ +   A+E  ++++  N
Sbjct: 308 ACKVFGETVCK---NVVVWTALLTGCGLNDKHVEALEVFSEMMRFN 350



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 5/179 (2%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++ F   L  C  L  L     +H+  +K G  +  +T N L+  Y +      A  +F 
Sbjct: 355 ESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFK 414

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            + E NVVS+ S++ G    G    AL+LF++ML   V  +E T   ++ ACS    L  
Sbjct: 415 GICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQK 474

Query: 147 GKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            +    +       +  +   + +VD+ G+C +V+ A  +   M    N + W  ++ A
Sbjct: 475 ARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSA 533


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 321/588 (54%), Gaps = 35/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H    K GF+ + F    LI  Y   ++   AR LFD+M  P+ V++  ++ GY   G 
Sbjct: 143 IHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGH 202

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF+ M  + + P+     TV+ AC    +L  G+ IH  ++  G+  +  + ++
Sbjct: 203 YDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTA 262

Query: 169 LVDMYGKCNDVDGARRV-------------------------------FDLMGCRNVVSW 197
           L++MY  C  +D AR++                               FD M  R++V W
Sbjct: 263 LINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCW 322

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           +++I  +A++ Q  EAL++F E   Q R  P+Q  + SVI+AC+ +G L      H  V 
Sbjct: 323 SAMISGYAESDQPQEALKLFDEM-LQKRSVPDQITMLSVISACSHVGALAQANWIHTYVD 381

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           RSG      V +AL+DMYAKCG++  + +VF  +   +V++++SMI   A +G    ++ 
Sbjct: 382 RSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIK 441

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF  M    I+PN VTF+GVL+AC H+GLV+EG +   SM  ++GI P  +HY C+VD+ 
Sbjct: 442 LFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLY 501

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R   L +A +L +++   P+   ++WG+L+SA ++HG  ++   A+ +L+E       A
Sbjct: 502 CRANFLRKAIELIETMPFAPN--VIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGA 559

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
            V LSN YA    W +V  +R  M   GI KE   S +EI +Q + F   +   ++  E+
Sbjct: 560 LVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEI 619

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
              L E+  K+K  GY    +G + +D+E+E ++E+V  HSE+LA+ +GLIS      IR
Sbjct: 620 YEKLDEVVSKLKLVGYKPSTSG-ILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIR 678

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLR+C DCH   KL+S + + + VVRD  RFHH   G CSC D+W
Sbjct: 679 IVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 179/380 (47%), Gaps = 37/380 (9%)

Query: 84  LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSMLA 142
           +F ++  P+      L+        P+  + L+  +   N    + F+F +++KA S ++
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIV 202
               G +IH      GF  +  + + L+ MY  C  +  AR +FD M   + V+W  II 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
            + QN    +AL +F +    S  +P+  +L +V++AC   G L  G+  H  V  +G  
Sbjct: 196 GYCQNGHYDDALRLFEDMR-SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL---GRF----- 314
            +  + +AL++MYA CG+++ + K+++ +S+  ++  T+M+ G AK G+    RF     
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM 314

Query: 315 -----------------------SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
                                  +L LF+EM+ +   P+ +T + V+ ACSH G + +  
Sbjct: 315 IERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA- 373

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
             + +   + G          ++DM  + G L +A ++ +++   P    + W ++++A 
Sbjct: 374 NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENM---PRKNVISWSSMINAF 430

Query: 412 RLHGRVDIAVEASNQLIESN 431
            +HG  D A++   ++ E N
Sbjct: 431 AMHGNADSAIKLFRRMKEVN 450


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/568 (34%), Positives = 316/568 (55%), Gaps = 11/568 (1%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM 100
           K +  +  V + ++ SG   + +  N ++  +V+      AR+LFDEM E N++S+ +++
Sbjct: 145 KSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTII 204

Query: 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160
            G ++ G    A  LF  M           F T+I+A + L  +  G+Q+H+     G  
Sbjct: 205 GGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVG 264

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            ++ V  +L+DMY KC  ++ A+ VFD M  +  V W SII  +A +    EAL M+   
Sbjct: 265 GDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMY--- 321

Query: 221 NYQSRD---RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
            Y+ RD   + +    + +I  CA L  L   K AH  +VR G   + V  +ALVD+Y+K
Sbjct: 322 -YEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSK 380

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
            G +  +  VF+ + + +V+++ ++I G   +G G  ++++F  M+  G+ PN VTF+ V
Sbjct: 381 WGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L ACS+SGL D G +  +SM R + I P A HY C++++LGR G LDEA+ L K     P
Sbjct: 441 LSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKP 500

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
                +W  LL+A R+H   ++   A+ +L     +  + YV L N Y  +G  E   ++
Sbjct: 501 TVN--MWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAV 558

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
              +KR G+   P CSW+EI+ Q Y F +G+    +  E+   L EL  ++ + GYV  +
Sbjct: 559 IQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYV-PQ 617

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
              +  DV DE  E ++  HSE+LA+AFGLI+      ++I+++ R+C DCH   KLI+ 
Sbjct: 618 XKFLLPDV-DEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIAL 676

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  R+ VVRD +RFHHF++GSCSCGD+W
Sbjct: 677 VTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 5/299 (1%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  ++ AC  L  +   K++  ++   G   +  + + ++ M+ KC  +  ARR+FD M
Sbjct: 133 TYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEM 192

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             +N++SW +II          EA  +F    +Q        M  ++I A A LG + +G
Sbjct: 193 PEKNILSWNTIIGGLVDAGDYFEAFRLFL-MMWQXFSDAGSRMFVTMIRASAGLGLIFAG 251

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +  H   +++G   +  VA AL+DMY+KCGS+  +  VF+++   + V + S+I G A +
Sbjct: 252 RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALH 311

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G    +L ++ EM   G+K ++ TF  ++  C+    ++   Q    + R +G   D   
Sbjct: 312 GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVR-HGFGLDIVA 370

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            T +VD+  + GR+++A  +     + P    + W  L++    HGR   AVE   +++
Sbjct: 371 NTALVDLYSKWGRIEDAKHV---FDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 104/226 (46%), Gaps = 4/226 (1%)

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           HEALE+F           +     ++++AC  L  +   K     ++ SG + ++ + + 
Sbjct: 112 HEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNR 171

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           ++ M+ KCG +  + ++F+ +   +++++ ++I G    G    +  LF  M        
Sbjct: 172 VLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAG 231

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
              FV ++ A +  GL+  G Q L S   K G+  D      ++DM  + G +++A  + 
Sbjct: 232 SRMFVTMIRASAGLGLIFAGRQ-LHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVF 290

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             +   P+   + W ++++   LHG  + A+    ++ +S  ++ N
Sbjct: 291 DQM---PEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 218/665 (32%), Positives = 346/665 (52%), Gaps = 76/665 (11%)

Query: 9   LIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHL 68
           L+ ++  S ++ QN           + Q  + K   +L +VHS++    F  N      L
Sbjct: 17  LVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIK---TLKNVHSKVFNLSFHENPSLGIKL 73

Query: 69  INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128
           +  Y    +  +AR +FD + E NV+ Y  ++  Y+N      ALL+F+ M+     P+ 
Sbjct: 74  MRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDH 133

Query: 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK------------- 175
           +T+  V+KACS   +L  G Q+H  +   G   NL V + L+ +YGK             
Sbjct: 134 YTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDE 193

Query: 176 ----------------------------CNDVDGARR----------------------- 184
                                       C ++DG R+                       
Sbjct: 194 MQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVL 253

Query: 185 ----VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
               +F  +  +++VSW  +I  + +N+   ++++++ +   +    P+    ASV+ AC
Sbjct: 254 YVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMG-KCEVEPDAITCASVLRAC 312

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             L  L+ G+  H  V R     N ++ ++L+DMYA+CG +  + +VF+R+    V ++T
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360
           S+I      G G  ++ LF EM + G  P+ + FV +L ACSHSGL++EG  +   M   
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420
           Y I P  +H+ C+VD+LGR+GR+DEAY + K + + P+    +WG LLS+ R++  +DI 
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNER--VWGALLSSCRVYSNMDIG 490

Query: 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQ 480
           + A+++L++   + +  YV LSN YA AG W  V ++RS MKR  I K PG S VE+ +Q
Sbjct: 491 ILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQ 550

Query: 481 TYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
            + F AG+    +  E+   L  L  KMKE GYV  KT     DVE+E +E  + +HSE+
Sbjct: 551 VHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYV-PKTDSALHDVEEEDKECHLAVHSEK 609

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+ F +++  +   IRI KNLR+C DCH   KLIS IV+R+ V+RD NRFHHF++G CS
Sbjct: 610 LAIVFAILNTQES-PIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICS 668

Query: 601 CGDFW 605
           CGD+W
Sbjct: 669 CGDYW 673


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 327/562 (58%), Gaps = 8/562 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H     SG L N      +I+ Y +  +   AR  F+E+   N V++ ++M  Y   G+
Sbjct: 53  IHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGR 112

Query: 109 PQIALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG--FQYNLV 164
            + AL LF++M        P++F+F+  I+ACS L DL  G++IH  +   G     ++V
Sbjct: 113 DREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVV 172

Query: 165 VCSSLVDMYGKCNDVDGARRVFD-LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
           V ++L++MY KC D++ AR+VFD +    + V W ++I A+AQ+ +G +AL+++R  +  
Sbjct: 173 VGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDT 232

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
           +   P Q    +VI+ CA L  L  G+  H  V  +  + N +V++ALV MY KCG ++ 
Sbjct: 233 TDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDE 292

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +  VF+ +     +++ ++I   A +G    +L L+ EM  +G+KP +VTFVG+L ACSH
Sbjct: 293 ALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSH 352

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
            GLV +G+ +   M   + I P   H+ C++D+LGR GRL EA  + KS+ +  +   + 
Sbjct: 353 GGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANA--VQ 410

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           W +LL A + HG +   V A++Q+++     +  YV LSN YA AG W++V  +R  M  
Sbjct: 411 WMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAA 470

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            G+ K PG SW+EI D  + F +G+    +G E+   L ++  +MK  GYV   T  VF 
Sbjct: 471 RGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYV-PDTSSVFH 529

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           D+E+E +E+++  HSE+LA+ +G + +P    +RI+KNLR+C DCH   K +S I  R  
Sbjct: 530 DLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKI 589

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           VVRD  RFH F NGSCSC D+W
Sbjct: 590 VVRDAARFHLFENGSCSCRDYW 611



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 178/329 (54%), Gaps = 11/329 (3%)

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD--LITGKQIHTHIETF 157
           MA + + G    AL+ F++M  +   P+  TF+ ++ A + +    +  G++IH +    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           G   N+VV ++++ MYGKC  +D AR  F+ +  +N V+W +++  +  + +  EALE+F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 218 REFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDM 274
           RE   +SR  RP++   +  I AC++L  L  G+  H ++ R G E +   VV +AL++M
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 275 YAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDV 332
           Y+KCG +  + KVF+ I  +   V + +MI   A++G G+ +LDL+  M  +  + P   
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
           TFV V+  C+    + +G + + +  R      +      +V M G+ G LDEA  +  S
Sbjct: 241 TFVTVIDVCAELSALKQG-RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299

Query: 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           +++  +   + W T++S+   HG  D A+
Sbjct: 300 MKLKDE---ISWNTIISSYAYHGHSDQAL 325



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F+  +  C  L +L    ++H+ +  + F +N    N L++ Y +      A  +F  M 
Sbjct: 242 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 301

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS---MLAD--- 143
             + +S+ ++++ Y   G    ALLL+Q+M    V P E TF  ++ ACS   ++AD   
Sbjct: 302 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLD 361

Query: 144 ----LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWT 198
               +    +I   +  FG          ++D+ G+   +  A  V   M  + N V W 
Sbjct: 362 YFYRMQDDHRIKPSVPHFG---------CIIDLLGRGGRLAEAELVLKSMPIQANAVQWM 412

Query: 199 SIIVA 203
           S++ A
Sbjct: 413 SLLGA 417


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 319/577 (55%), Gaps = 40/577 (6%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  T   ++  Y ++   + AR+ FDEM E +VVS+ ++ + Y     P+ AL LF +ML
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
              + P++ T+   I +CS + D      I   I+      N  V ++L+DM+ K  +++
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 181 GARRVFDLMGC--------------------------------RNVVSWTSIIVAHAQNA 208
            AR +FD +G                                 R+VVSW S+I  +AQN 
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +   ++E+F+E       +P++  +ASV++AC  +G L        +V     +      
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++L+ MY+KCGSV  + ++F  +    VV++ ++I G A  G G+ ++ L   M   GI+
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VT++GVL ACSH+GL++EG     S+       P   HY C+VD+LGR G LDEA  
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKM 545

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
           L +S+ + P  G  ++G+LL+ASR+H RV +   A+++L E   Q    YV LSN YA  
Sbjct: 546 LIQSMPMKPHAG--VYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASF 603

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
           G WE+V  +R  MK+ G+ K  G SWVE + Q + F  G+   E+  ++  LL ELERKM
Sbjct: 604 GRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKM 663

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           K  G+V  K+     DVE+E +EE++G HSE+LA+ F L+    G TIR++KNLR+C DC
Sbjct: 664 KRVGFVADKS-CALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDC 722

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H   K+IS +  R+ VVRD NRFH F  G CSC D+W
Sbjct: 723 HTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 10/271 (3%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           G   N  T N +I+ Y R+ K  +AR+LFD M + +VVS+ S++AGY   G+  +++ LF
Sbjct: 320 GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELF 379

Query: 117 QKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           ++M+  + + P+E T A+V+ AC  +  L     +   +     +  +   +SL+ MY K
Sbjct: 380 KEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSK 439

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           C  V  A R+F  MG R+VVS+ ++I   A N  G EA+++      +  + P+      
Sbjct: 440 CGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE-PDHVTYIG 498

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NP 294
           V+ AC+  G L  GK     +     +      + +VD+  + G ++ +  +   +   P
Sbjct: 499 VLTACSHAGLLNEGKNVFKSIQAPTVDH----YACMVDLLGRAGELDEAKMLIQSMPMKP 554

Query: 295 SVVTYTSMIVGA---AKYGLGRFSLDLFNEM 322
               Y S++  +    + GLG  +     E+
Sbjct: 555 HAGVYGSLLNASRIHKRVGLGELAASKLFEL 585



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           SG + H  V++ G   +  + +A++DMYAK G V+ +  +F +++  ++  + SMI G  
Sbjct: 113 SGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCW 172

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           K G    ++ LFN M +R I    +T+  ++   +  G ++   ++ D M
Sbjct: 173 KSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEM 218


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 331/588 (56%), Gaps = 34/588 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V++ I  SG   N   ++ L++ Y++     VA++LFDE    N+    ++ + Y+  G 
Sbjct: 258 VYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGL 317

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F  M+ + V P+  +  + I +CS L +++ GK  H ++   GF+    +C++
Sbjct: 318 TREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA 377

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA-------------------- 208
           L+DMY KC+  D A R+FD M  + VV+W SI+  + +N                     
Sbjct: 378 LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSW 437

Query: 209 --------QG---HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                   QG    EA+E+F     Q     +   + S+ +AC  LG L   K  +  + 
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE 497

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           ++G + +  + + LVDM+++CG    +  +FN ++N  V  +T+ I   A  G    +++
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIE 557

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF++MI +G+KP+ V FVG L ACSH GLV +G +   SM + +G+ P+  HY C+VD+L
Sbjct: 558 LFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLL 617

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G L+EA +L + + ++P+   ++W +LL+A R+ G V++A  A+ ++     +   +
Sbjct: 618 GRAGLLEEAVQLIEDMPMEPN--DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGS 675

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN YA AG W ++  +R  MK  G+ K PG S ++IR +T+ F +G+        +
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            ++L E+ ++    G+V   +  V +DV+++ +  ++  HSE+LA+A+GLIS  KG TIR
Sbjct: 736 EAMLDEVSQRASHLGHVPDLSN-VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIR 794

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I+KNLR+C DCH   K  S +  R+ ++RD NRFH+ R G CSCGDFW
Sbjct: 795 IVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 218/436 (50%), Gaps = 34/436 (7%)

Query: 13  LAASSLTRQN--KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI- 69
           LA ++ T+ +   +S C TKA     L+ CK +  L   H  + K G  ++  T+  L+ 
Sbjct: 15  LATTTTTKPSLLNQSKC-TKAT-PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVA 72

Query: 70  -NCYVRLKKT-QVARQLFDEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            +C +  +++   A+++F+          Y SL+ GY + G    A+LLF +M+ + + P
Sbjct: 73  RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +++TF   + AC+       G QIH  I   G+  +L V +SLV  Y +C ++D AR+VF
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  RNVVSWTS+I  +A+     +A+++F          PN   +  VI+ACA L  L
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
            +G+  +  +  SG E ND++ SALVDMY KC +++ + ++F+     ++    +M    
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQHLD 355
            + GL R +L +FN M+  G++P+ ++ +  + +CS           H  ++  G +  D
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           ++               ++DM  +  R D A+++   +    +   + W ++++    +G
Sbjct: 373 NI------------CNALIDMYMKCHRQDTAFRIFDRMS---NKTVVTWNSIVAGYVENG 417

Query: 416 RVDIAVEASNQLIESN 431
            VD A E    + E N
Sbjct: 418 EVDAAWETFETMPEKN 433


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 304/559 (54%), Gaps = 14/559 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++++G  SNT     ++N YV+      A+++FD+M     V+ T LM GY   G+
Sbjct: 206 IHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGR 265

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF  ++   V  + F F+ V+KAC+ L +L  GKQIH  +   G +  + V + 
Sbjct: 266 ARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTP 325

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD Y KC+  + A R F  +   N VSW++II  + Q +Q  EA++ F+    ++    
Sbjct: 326 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASIL 385

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S+  AC+ L     G   H   ++     +    SAL+ MY+KCG ++ +++VF
Sbjct: 386 NSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVF 445

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + NP +V +T+ I G A YG    +L LF +M+S G+KPN VTF+ VL ACSH+GLV+
Sbjct: 446 ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVE 505

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G   LD+M RKY + P   HY C++D+  R+G LDEA K  K++  +PD   + W   L
Sbjct: 506 QGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDA--MSWKCFL 563

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           S    H  +++   A  +L + + +    YV   N Y  AG+WE    +   M    + K
Sbjct: 564 SGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKK 623

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           E  CSW++ + + + F  G+    +  E+   L+E +         G   G +F     E
Sbjct: 624 ELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFD---------GFMEGDMFQCNMTE 674

Query: 529 AREEIVGLHSERLALAFGLISI--PKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            RE+++  HSERLA+AFGLIS+       I++ KNLR C DCH+  K +S +   + V+R
Sbjct: 675 RREQLLD-HSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIR 733

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFHHF+ G CSC D+W
Sbjct: 734 DSRRFHHFKEGKCSCNDYW 752



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 194/399 (48%), Gaps = 15/399 (3%)

Query: 37  LQECKHLISLASVHSEIL----KSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEP 91
            + C+ L SL+  H  +L    + G  + +  L N ++  Y   +  + A +LFDEM E 
Sbjct: 90  FEACRELRSLS--HGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSEL 147

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N VS T++++ Y   G    A+ LF  ML +   P    + T++K+      L  G+QIH
Sbjct: 148 NAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIH 207

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            H+   G   N  + + +V+MY KC  + GA+RVFD M  +  V+ T ++V + Q  +  
Sbjct: 208 AHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRAR 267

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +AL++F +   +  +  +  + + V+ ACASL  L  GK  H  V + G E    V + L
Sbjct: 268 DALKLFVDLVTEGVEW-DSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPL 326

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-N 330
           VD Y KC S   + + F  I  P+ V+++++I G  +      ++  F  + S+     N
Sbjct: 327 VDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILN 386

Query: 331 DVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
             T+  +  ACS     + G Q H D++ R   +I      + ++ M  + G LD+A ++
Sbjct: 387 SFTYTSIFQACSVLADCNIGGQVHADAIKR--SLIGSQYGESALITMYSKCGCLDDANEV 444

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            +S+  +PD   + W   +S    +G    A+    +++
Sbjct: 445 FESMD-NPD--IVAWTAFISGHAYYGNASEALRLFEKMV 480



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 160/331 (48%), Gaps = 5/331 (1%)

Query: 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           A    Q+M    V  + +++  + +AC  L  L  G+ +H  +       ++++ + ++ 
Sbjct: 67  AFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQ 126

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY +C  ++ A ++FD M   N VS T++I A+A+     +A+ +F      S D+P   
Sbjct: 127 MYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGM-LASGDKPPSS 185

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           M  +++ +  +   L  G+  H  V+R+G   N  + + +V+MY KCG +  + +VF+++
Sbjct: 186 MYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQM 245

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
           +    V  T ++VG  + G  R +L LF ++++ G++ +   F  VL AC+    ++ G 
Sbjct: 246 AVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGK 305

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
           Q + +   K G+  +    T +VD   +    + A +  + I+   D   + W  ++S  
Sbjct: 306 Q-IHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPND---VSWSAIISGY 361

Query: 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
               + + AV+    L   N  + N++   S
Sbjct: 362 CQMSQFEEAVKTFKSLRSKNASILNSFTYTS 392


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 333/574 (58%), Gaps = 31/574 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY---- 103
           +VH  ++K+G  ++ F  + +++ Y +      A  LF  +L+PNVV + +++AG     
Sbjct: 238 AVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDE 297

Query: 104 --INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
             ++    + AL L+ ++    + P EFTF++VI+AC++  D+  GKQIH  +    FQ 
Sbjct: 298 AAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQG 357

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + S+L+D+Y     ++   R F  +  ++VV+WT++I    QN     AL +F E  
Sbjct: 358 DDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHEL- 416

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                +P+   ++SV+NACASL  + +G+       +SG +    + ++ + MYA+ G+V
Sbjct: 417 LGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNV 476

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + + F  + +  VV+++++I   A++G  R +L  FNEM+   + PN++TF+GVL AC
Sbjct: 477 EAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTAC 536

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK-SIQVDPDGG 400
           SH GLVDEG+++ + M  +YG+ P  KH TCVVD+LGR GRL +A    + SI  D    
Sbjct: 537 SHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDE--- 593

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P++W +LL + R+H  ++     +++++E     +  YV L N Y  AGE      +R  
Sbjct: 594 PVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGELSLGSKIRDL 653

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAG-------NALFERGSEVLSLLRELERKMKERGY 513
           MK  G+ KEPG SW+E+R   ++F AG       NA++ + +E+LS + +L         
Sbjct: 654 MKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSKIDKLT-------- 705

Query: 514 VGGKTGLVFVD-VEDEAREE-IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDV 571
               T    ++ VE   RE+  +  HSE+LA+A G+I +P+   IR+MKNLR+CRDCH  
Sbjct: 706 ---TTDTSCIEWVETTGREQNWMNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCHST 762

Query: 572 FKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            KLIS    R+ ++RDV RFHHFR+GSCSCGD+W
Sbjct: 763 MKLISKSECREIILRDVIRFHHFRDGSCSCGDYW 796



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 197/393 (50%), Gaps = 20/393 (5%)

Query: 31  AHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLK--KTQVARQLFDEM 88
           A ++  L+ C  L   A+VH  I ++    + F  N L+  Y RL    T  AR+L DEM
Sbjct: 14  AFYLHHLRSCASLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEM 73

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLF-QKMLGNLVWPNEFTFATVIKACSMLADLITG 147
              N VS+  L+  Y   GQ + +L  F        V  + FT+A  + ACS    L  G
Sbjct: 74  PRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEG 133

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           K +H      G    + V +SLV MY +C D+  ARRVFD+   R+ VSW S++  + + 
Sbjct: 134 KVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLR- 192

Query: 208 AQGHEALEMFREFNYQSRDRP--NQHMLASVINACASLGRLVSG--KVAHGVVVRSGCEF 263
              HE  EM R F    R     N   L SVI  C+     V G  +  HG VV++G + 
Sbjct: 193 VGAHE--EMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDT 250

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG------AAKYGLGRFSLD 317
           +  +ASA+VDMYAK G+++ +  +F  + +P+VV + +MI G      A    + R +L 
Sbjct: 251 DLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALS 310

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           L++E+ SRG++P + TF  V+ AC+ +G ++ G Q +     K+    D    + ++D+ 
Sbjct: 311 LYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQ-IHGQVLKHCFQGDDFIGSALIDLY 369

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
             +  +++ ++  +S+   P    + W  ++S 
Sbjct: 370 FNSACMEDGFRCFRSV---PKQDVVTWTAMISG 399


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 332/565 (58%), Gaps = 6/565 (1%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L++   +H+  +K+   SN    N LI+ Y +      A  +FD+M+  +++S+T+++A
Sbjct: 228 YLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIA 287

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
            Y        AL L +K+    +  +     + + ACS L  L   K++H +    G   
Sbjct: 288 AYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS- 346

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +L++ + ++D+Y  C +++ A R+F+ + C++VVSWTS+I  +  N   +EAL +F    
Sbjct: 347 DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMK 406

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
             S + P+   L S+++A ASL  L  GK  HG + R G        ++LVDMYA CGS+
Sbjct: 407 ETSVE-PDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSL 465

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + KVF    + S+V +T+MI     +G G+ +++LF+ M  + + P+ +TF+ +L+AC
Sbjct: 466 ENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYAC 525

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SHSGL++EG + L++M  KY + P  +HY C+VD+LGR   L+EAY   KS+Q++P    
Sbjct: 526 SHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAE- 584

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W   L A R+H    +   A+ +L++ +     +YV +SN +A +G W++V  +R  M
Sbjct: 585 -VWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRM 643

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM-KERGYVGGKTGL 520
           K  G+ K PGCSW+E+ ++ + F   +       ++   L ++  K+ KE GYV  +T L
Sbjct: 644 KGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVP-QTKL 702

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  +V  E + +++  HSERLA+A+GL+S  +G  IRI KNLR+C DCH   KL+S   E
Sbjct: 703 VLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFE 762

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ +VRD +RFHHF +G CSCGDFW
Sbjct: 763 RELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/403 (30%), Positives = 216/403 (53%), Gaps = 17/403 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ILKS  + + +  N L+  +VR  K   A ++FDE+ E + +++ S++AG+   G 
Sbjct: 134 IHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGL 193

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL  F  +    + P+E +  +++ A   L  L+ GK+IH +        NL + ++
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNT 253

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  V  A  VFD M  ++++SWT++I A+AQN    EAL++ R+   +  D  
Sbjct: 254 LIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMD-V 312

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +  M+ S + AC+ L  L   K  HG  ++ G   + ++ + ++D+YA CG++NY+ ++F
Sbjct: 313 DTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMF 371

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             I    VV++TSMI      GL   +L +F  M    ++P+ +T V +L A +    ++
Sbjct: 372 ESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALN 431

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL-----AKSIQVDPDGGPLL 403
           +G +    ++RK G + +      +VDM    G L+ AYK+     +KS+        +L
Sbjct: 432 KGKEIHGFIFRK-GFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSL--------VL 482

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
           W T+++A  +HGR   AVE  + ++E  + + +    L+  YA
Sbjct: 483 WTTMINAYGMHGRGKAAVELFS-IMEDQKLIPDHITFLALLYA 524



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 179/354 (50%), Gaps = 14/354 (3%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN-VVSYTSLMAGYIN 105
           A +H  I+K G+ S  F  N L++ Y +      AR+LFD M E N VVS+ S+++ Y  
Sbjct: 30  AEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSL 89

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            GQ   AL LF++M    V  N +T    ++AC   +    G +IH  I       ++ V
Sbjct: 90  NGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYV 149

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LV M+ +   +  A R+FD +  ++ ++W S+I    QN   +EAL+ F      + 
Sbjct: 150 ANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQ-DAN 208

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            +P++  L S++ A   LG L++GK  H   +++  + N  + + L+DMY+KC  V Y+ 
Sbjct: 209 LKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAG 268

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            VF+++ N  ++++T++I   A+      +L L  ++ ++G+  + +     L ACS   
Sbjct: 269 LVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS--- 325

Query: 346 LVDEGIQHLDSMYRKYGI-----IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
               G++ L      +G      + D      ++D+    G ++ A ++ +SI+
Sbjct: 326 ----GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIK 375



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 10/261 (3%)

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           + FTF  V+KAC ++ D+  G +IH  I   G+   + V +SLV MY KCND+ GAR++F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 187 DLMGCRN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           D M  RN VVSW SII A++ N Q  EAL +FRE   ++    N + L + + AC     
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQ-KAGVGANTYTLVAALQACEDSSF 127

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
              G   H  +++S    +  VA+ALV M+ + G ++Y+ ++F+ +     +T+ SMI G
Sbjct: 128 KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAG 187

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ--------HLDSM 357
             + GL   +L  F  +    +KP++V+ + +L A    G +  G +         LDS 
Sbjct: 188 FTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSN 247

Query: 358 YRKYGIIPDAKHYTCVVDMLG 378
            R    + D     C V   G
Sbjct: 248 LRIGNTLIDMYSKCCCVAYAG 268


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/571 (33%), Positives = 331/571 (57%), Gaps = 25/571 (4%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY---- 103
           +VH  ++K+G  ++ F  + +I+ Y +      A  LF  + +PNV+ + +++AG+    
Sbjct: 227 AVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDE 286

Query: 104 --INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
             +     + AL L+ +M    + P+EFTF+++++AC++  +   GKQIH  +    F  
Sbjct: 287 AAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHD 346

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + S+L+D+Y     ++   R F  +  +++V+WTS+I    QN    +AL +F+E +
Sbjct: 347 DDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQE-S 405

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                +P+   ++SV+NACASL    +G+    + ++ G      + ++ + M A+ G V
Sbjct: 406 ICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDV 465

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
           +   + F  + +  VV+++++I   A++G  R +L +FNEM++  + PN+VTF+ VL AC
Sbjct: 466 DAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTAC 525

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH GLVD+G+++ + M  +YG+ P  KH TCVVD+LGR GRL +A    +      D   
Sbjct: 526 SHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDA-- 583

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           ++W +LL++ R+HG ++     ++Q+++     + +YV L N Y  AGE       R  M
Sbjct: 584 VVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLM 643

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAG-------NALFERGSEVLSLLRELERKMKERGYV 514
           K  G+ KEPG SW+E+R   ++F AG       NA++++ +E+LS   ++E+        
Sbjct: 644 KERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLS---KIEKLANTDNAS 700

Query: 515 GGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKL 574
            G  G+        + + +VG HSE++A+AFG+I +P+   IR+MKNLR+CRDCH   KL
Sbjct: 701 TGSDGI------SSSEQNLVGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKL 754

Query: 575 ISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IS    R+ ++RD  RFHHFR GSCSCGD+W
Sbjct: 755 ISGSENREIILRDGIRFHHFRGGSCSCGDYW 785



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 201/392 (51%), Gaps = 18/392 (4%)

Query: 30  KAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV--ARQLFDE 87
           +A ++  L+ C  L  +A+VH+ I ++   ++ F  N L+  Y RL       A +L DE
Sbjct: 2   EAFYLDLLRSCTALPHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDE 61

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLIT 146
           M   N VSY  L++ Y   G P  AL  F +      +  + FT+A  + ACS   DL T
Sbjct: 62  MPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRT 121

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
           GK +H      G    + + +SL  MY  C ++  ARRVFD     + VSW S++  + +
Sbjct: 122 GKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVR 181

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS---LGRLVSGKVAHGVVVRSGCEF 263
                E L++F    +      N   L S+I  CAS   +GR ++  V HG VV++G + 
Sbjct: 182 AGAREETLKVFSLMCHHGLGW-NSFALGSIIKCCASGSDVGRHIAEAV-HGCVVKAGLDA 239

Query: 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG------AAKYGLGRFSLD 317
           +  +ASA++DMYAK G++  +  +F  + +P+V+ + +MI G      A    + R +L 
Sbjct: 240 DLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALS 299

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           L++EM SRG++P++ TF  +L AC+ +G    G Q +     K+    D    + ++D+ 
Sbjct: 300 LYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQ-IHGQVLKHSFHDDDYIGSALIDLY 358

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
             +G +++ Y+  +S+   P    + W +++S
Sbjct: 359 SDSGCMEDGYRCFRSL---PKQDIVTWTSMIS 387


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/556 (35%), Positives = 320/556 (57%), Gaps = 4/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H   +K+G   + +  + +++ Y +      A ++FD +   NV ++ S++ G+++ GQ 
Sbjct: 136 HGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQM 195

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             +  + + M+ N+   +  ++  V+  C+   +++ G Q+HT       + N+ V S+L
Sbjct: 196 DGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSAL 255

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           VDMYGKC+    A RVF+++  +N+VSWT+I+ A+ QN    +AL++F +   +   RPN
Sbjct: 256 VDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGV-RPN 314

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +   A  +N+CA L  L +G       +++G      V +AL++MY+K GSV  + +VF 
Sbjct: 315 EFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFL 374

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +    VV++ S+I+G A +G  R +++ F++M+     P+ VTF+GVL AC+  GLVDE
Sbjct: 375 SMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDE 434

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G  +L+ M ++ G+ P  +HYTC+V +L R GRLDEA +  +S  +  D   + W +LLS
Sbjct: 435 GFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTD--VVAWRSLLS 492

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           + +++    +    + Q+ +   +    YV LSN YA A  W+ V  +R  M+  G+ KE
Sbjct: 493 SCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKE 552

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG SW+++  + + F + +       ++   L+EL  K+K  GYV     +   DVEDE 
Sbjct: 553 PGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYV-PNIAVALHDVEDEQ 611

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +EE +  HSE+LALAFGLI  PKG  IRIMKN+R+C DCH   KLIS    R  VVRD  
Sbjct: 612 KEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTV 671

Query: 590 RFHHFRNGSCSCGDFW 605
           RFH   +G CSC D+W
Sbjct: 672 RFHCIEDGVCSCDDYW 687



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 212/431 (49%), Gaps = 23/431 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH+ ++++    +    N+LI  YV+  +  +ARQ+FD M   N VS   LM+GY + G
Sbjct: 37  AVHARVVRAARF-DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSG 95

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + AL L +     L   NE+  ++ + A + +     G+Q H +    G   +  VCS
Sbjct: 96  RHRDALALLRVADFGL---NEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCS 152

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +++ MY +C  +D A +VFD +   NV ++ S+I       Q   +  + R    ++  +
Sbjct: 153 AVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSM-VRNVGQ 211

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            +     +V+  CAS   +V G   H   ++   E N  V SALVDMY KC   + +++V
Sbjct: 212 WDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRV 271

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +   ++V++T+++    +  L   +L LF +M   G++PN+ T+   L++C+    +
Sbjct: 272 FEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATL 331

Query: 348 DEGIQHLDSMYRK---YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
             G   L +   K   +G++P       +++M  ++G +++A ++  S+   P    + W
Sbjct: 332 KNG-NALGACTMKTGHWGLLPVC---NALMNMYSKSGSVEDARRVFLSM---PCRDVVSW 384

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT----LSNTYALAGEWENVHSLRSE 460
            +++     HGR   A+EA + ++ + +    +YVT    LS    L    E  + L   
Sbjct: 385 NSIIIGYAHHGRAREAMEAFHDMLFAEE--VPSYVTFIGVLSACAQLGLVDEGFYYLNIM 442

Query: 461 MKRTGIHKEPG 471
           MK  G+  +PG
Sbjct: 443 MKEVGV--KPG 451



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 159/313 (50%), Gaps = 17/313 (5%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  L  C   K ++  + VH++ LK     N +  + L++ Y +      A ++F+ + 
Sbjct: 217 YVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLP 276

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E N+VS+T++M  Y      + AL LF  M    V PNEFT+A  + +C+ LA L  G  
Sbjct: 277 EKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNA 336

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +       G    L VC++L++MY K   V+ ARRVF  M CR+VVSW SII+ +A + +
Sbjct: 337 LGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGR 396

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVA 268
             EA+E F +  + + + P+      V++ACA LG +  G     ++++  G +      
Sbjct: 397 AREAMEAFHDMLF-AEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHY 455

Query: 269 SALVDMYAKCGSVNYSDK-VFNRISNPSVVTYTSMIVGAA---KYGLG-RFSLDLFNEMI 323
           + +V +  + G ++ +++ + +      VV + S++        YGLG R +  +F    
Sbjct: 456 TCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQ--- 512

Query: 324 SRGIKPNDV-TFV 335
              +KP DV T+V
Sbjct: 513 ---LKPKDVGTYV 522



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 138/270 (51%), Gaps = 11/270 (4%)

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
            +L  GK +H  +     ++++V  ++L+ +Y KC  +  AR+VFD M  RN VS   ++
Sbjct: 30  GELSLGKAVHARV-VRAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLM 88

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
             +A + +  +AL + R  ++      N+++L+S + A A +     G+  HG  +++G 
Sbjct: 89  SGYASSGRHRDALALLRVADFGL----NEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGL 144

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             +  V SA++ MY +C  ++ + KVF+ +S+ +V  + SMI G    G    S  +   
Sbjct: 145 AEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRS 204

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           M+    + + V++V VL  C+ +  V  G Q H  ++ R+  +  +    + +VDM G+ 
Sbjct: 205 MVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLEL--NVYVGSALVDMYGKC 262

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
              D  ++  +  +V P+   + W  +++A
Sbjct: 263 ---DFPHEANRVFEVLPEKNIVSWTAIMTA 289


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 313/555 (56%), Gaps = 7/555 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +GF  +    N L   Y+     + A +LF  M   ++VS+T++++GY     
Sbjct: 319 IHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFL 378

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  A+  ++ M  + V P+E T A V+ AC+ L DL TG ++H           ++V ++
Sbjct: 379 PDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY KC  +D A  +F  +  +NV+SWTSII     N +  EAL   R+     +  P
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQ--P 496

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L + + ACA +G L+ GK  H  V+R+G   +D + +AL+DMY +CG +N +   F
Sbjct: 497 NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF 556

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N      V ++  ++ G ++ G G   ++LF+ M+   ++P+++TF+ +L  CS S +V 
Sbjct: 557 NS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVR 615

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+ +   M   YG+ P+ KHY CVVD+LGR G L EA+K  + + V PD  P +WG LL
Sbjct: 616 QGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD--PAVWGALL 672

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H ++D+   ++  + E +++    Y+ L N YA  G+W  V  +R  MK  G+  
Sbjct: 673 NACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTV 732

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           + GCSWVE++ + +AF + +    +  E+ ++L     KM E G          +D  + 
Sbjct: 733 DAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISES-SSMDETEI 791

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           +R+EI   HSER A+AFGLI+   G+ I + KNL MC +CHD  K IS  V R+  VRD 
Sbjct: 792 SRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDA 851

Query: 589 NRFHHFRNGSCSCGD 603
             FHHF++G CSCGD
Sbjct: 852 EHFHHFKDGECSCGD 866



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 186/352 (52%), Gaps = 6/352 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLV 124
           N  +  +VR      A  +F +M E N+ S+  L+ GY   G    A+ L+ +ML    V
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            P+ +TF  V++ C  + DL  GK++H H+  +G++ ++ V ++L+ MY KC DV  AR 
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +FD M  R+++SW ++I  + +N   HE LE+F      S D P+   L SVI+AC  LG
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVD-PDLMTLTSVISACELLG 311

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
               G+  H  V+ +G   +  V ++L  MY   GS   ++K+F+R+    +V++T+MI 
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G     L   ++D +  M    +KP+++T   VL AC+  G +D G++ L  +  K  +I
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVE-LHKLAIKARLI 430

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
                   +++M  +   +D+A  +  +I   P    + W ++++  RL+ R
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNI---PRKNVISWTSIIAGLRLNNR 479



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 207/397 (52%), Gaps = 10/397 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  +  LA    VH  +++ G+  +   +N LI  YV+    + AR LFD M   ++
Sbjct: 203 LRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDI 262

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+ ++++GY   G     L LF  M G  V P+  T  +VI AC +L D   G+ IH +
Sbjct: 263 ISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           + T GF  ++ VC+SL  MY        A ++F  M  +++VSWT++I  +  N    +A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           ++ +R  + Q   +P++  +A+V++ACA+LG L +G   H + +++      +VA+ L++
Sbjct: 383 IDTYRMMD-QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLIN 441

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KC  ++ +  +F+ I   +V+++TS+I G  +     F   +F   +   ++PN +T
Sbjct: 442 MYSKCKCIDKALDIFHNIPRKNVISWTSIIAG-LRLNNRCFEALIFLRQMKMTLQPNAIT 500

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
               L AC+  G +  G + + +   + G+  D      ++DM  R GR++ A+    S 
Sbjct: 501 LTAALAACARIGALMCG-KEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQ 559

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           + D       W  LL+     G+  + VE  +++++S
Sbjct: 560 KKDVTS----WNILLTGYSERGQGSMVVELFDRMVKS 592


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 212/621 (34%), Positives = 328/621 (52%), Gaps = 50/621 (8%)

Query: 32  HFIQQLQECKHLISL---ASVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFD 86
           H+   L+ C    SL     +H+ I+ +G      TF  N L+  Y        AR++FD
Sbjct: 15  HYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFD 74

Query: 87  EMLE--PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           E+     + V +T+LM  ++       ALL+F +M    V P+E T   +   C+ L D+
Sbjct: 75  EIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDV 134

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF------------------ 186
           + G Q H  +   G       C++++DMY K   +  ARRVF                  
Sbjct: 135 VVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGV 194

Query: 187 -------------DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
                        D M  RN V+WT +I  +  +    E+  + RE  +      N   L
Sbjct: 195 IRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTL 254

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
            S++ AC+  G L+ G+  H   +++   E N +V +A+VDMYAKCG ++ + K F ++ 
Sbjct: 255 CSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP 314

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             +VV++ +M+ G A +GLGR +LD+F +M     KP+DVTF  VL ACSHSGLVD+G  
Sbjct: 315 QRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCF 373

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           +  ++   YGI P  +HY C+VD+LGR GRL+EA  L + + + P+   ++ G+LL +  
Sbjct: 374 YFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPN--EVVLGSLLGSCS 431

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG++ +      +L++ + Q    ++ LSN YALAG+    +SLR  +K+ GI K PG 
Sbjct: 432 IHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGM 491

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD-------- 524
           S + +  Q + F AG+    R  EV ++L E+  +++  GY        F          
Sbjct: 492 SSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDL 551

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           VE E +E+ +  HSE+LA+ FGLIS   G+ + I KNLR+C+DCH   K++S I  R+ V
Sbjct: 552 VEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIV 611

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           +RD NRFH F+ GSCSC D+W
Sbjct: 612 IRDRNRFHCFKEGSCSCCDYW 632


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-- 91
           ++ C +L  LA    +HS +LK GF S+   +  +++ Y +  +   A  +F  +L P  
Sbjct: 309 IKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIF--LLMPGS 366

Query: 92  -NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            NVVS+T+++ G I      +A  LF +M  + V PNEFT++TV+ A    +  I   QI
Sbjct: 367 QNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA----SIPILLPQI 422

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H  I    +Q+   V ++L+  Y K  + + A  +F ++  ++VV+W++++  ++Q    
Sbjct: 423 HAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDC 482

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACAS-LGRLVSGKVAHGVVVRSGCEFNDVVAS 269
             A  +F + + Q   +PN+  ++S I+ACAS    +  G+  H + ++   +    V S
Sbjct: 483 DGATNVFIKMSMQGM-KPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGS 541

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           ALV MYA+ GS++ +  VF R ++  +V++ SMI G A++G  + +LD F +M + GI+ 
Sbjct: 542 ALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEM 601

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +  TF+ V+  C+H+GLV EG Q+ DSM   + I P  +HY+C+VD+  R G+LDE   L
Sbjct: 602 DGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNL 661

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + +      G ++W TLL A R+H  V++   A+ +L+      +  YV LSN YA AG
Sbjct: 662 IEGMPF--PAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAG 719

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W+    +R  M    + KE GCSW++I+++ ++F A +       ++ + L+ +  ++K
Sbjct: 720 RWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLK 779

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           + GY    T +V  D+ +E +E ++ +HSERLALAFGLI+ P    ++I+KNLR+C DCH
Sbjct: 780 QEGYC-PNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCH 838

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            V K++S I +R+ ++RD +RFHHF  G+CSCGDFW
Sbjct: 839 MVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 198/402 (49%), Gaps = 29/402 (7%)

Query: 44  ISLASVHSEILKSGF-LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           +S   +H   +K GF  +       L++ Y++    +  R +F+ M + NVV++TSL+ G
Sbjct: 116 VSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTG 175

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
           Y+        + LF +M    VWPN FTF +V+ A +    +  G+++H     FG +  
Sbjct: 176 YVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRST 235

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
           + VC+SL++MY KC  V+ A+ VF  M  R++VSW +++     N    EAL++F + + 
Sbjct: 236 VFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHD-SR 294

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            S  + +Q   ++VI  CA+L +L   +  H  V++ G   +  V +A++D Y+KCG ++
Sbjct: 295 ASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELD 354

Query: 283 YSDKVFNRIS-NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            +  +F  +  + +VV++T+MI G  +      +  LF+ M    +KPN+ T+  VL A 
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTAS 414

Query: 342 -------SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
                   H+ ++    QH  S+             T ++    + G  +EA  + K I 
Sbjct: 415 IPILLPQIHAQIIKTNYQHAPSV------------GTALLASYSKLGNTEEALSIFKMID 462

Query: 395 VDPDGGPLLWGTLLS----ASRLHGRVDIAVEASNQLIESNQ 432
                  + W  +LS    A    G  ++ ++ S Q ++ N+
Sbjct: 463 ---HKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNE 501



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 3/257 (1%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLV-VCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           V+K C ++ D ++G+Q+H      GF    V V ++LVDMY KC  V+  R VF+ M  R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           NVV+WTS++  + Q     + + +F     +    PN     SV++A AS G +  G+  
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGV-WPNPFTFTSVLSAVASQGAVDLGRRV 223

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H   V+ GC     V ++L++MY+KCG V  +  VF ++    +V++ +++ G       
Sbjct: 224 HAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQ 283

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
             +L LF++  +   K +  T+  V+  C++   +    Q L S   K+G   D    T 
Sbjct: 284 LEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQ-LHSCVLKHGFHSDGNVMTA 342

Query: 373 VVDMLGRTGRLDEAYKL 389
           ++D   + G LD+A+ +
Sbjct: 343 IMDAYSKCGELDDAFNI 359


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 331/565 (58%), Gaps = 6/565 (1%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           +L++   +H+ ++K G+ SN    N LI+ Y +   T    + F  M + +++S+T+++A
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY        AL LF+ +    +  +E    ++++A S+L  ++  K+IH HI   G   
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 519

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           + V+ + LVD+YGKC ++  A RVF+ +  ++VVSWTS+I + A N    EA+E+FR   
Sbjct: 520 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM- 578

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            ++    +   L  +++A ASL  L  G+  H  ++R G      +A A+VDMYA CG +
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             +  VF+RI    ++ YTSMI     +G G+ +++LF++M    + P+ ++F+ +L+AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH+GL+DEG   L  M  +Y + P  +HY C+VDMLGR   + EA++  K ++ +P    
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAE- 757

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +W  LL+A R H   +I   A+ +L+E   +     V +SN +A  G W +V  +R++M
Sbjct: 758 -VWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKM 816

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM-KERGYVGGKTGL 520
           K +G+ K PGCSW+E+  + + F A +       E+   L E+ RK+ +E GYV   T  
Sbjct: 817 KASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVA-DTKF 875

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V  +V++  + +++  HSER+A+A+GL+  P    +RI KNLR+CRDCH   KL+S +  
Sbjct: 876 VLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFR 935

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           RD V+RD NRFHHF +G CSCGD W
Sbjct: 936 RDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 200/384 (52%), Gaps = 7/384 (1%)

Query: 49  VHSEILKSGFLSNT-FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +H+ +LKS   S+  +  N LI  Y R  K   A ++  +M   +VV++ SL+ GY+   
Sbjct: 306 IHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNL 365

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL  F  M+      +E +  ++I A   L++L+ G ++H ++   G+  NL V +
Sbjct: 366 MYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGN 425

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+DMY KCN      R F  M  ++++SWT++I  +AQN    EALE+FR+   + R  
Sbjct: 426 TLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA-KKRME 484

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            ++ +L S++ A + L  ++  K  H  ++R G   + V+ + LVD+Y KC ++ Y+ +V
Sbjct: 485 IDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRV 543

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  I    VV++TSMI  +A  G    +++LF  M+  G+  + V  + +L A +    +
Sbjct: 544 FESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSAL 603

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++G +    + RK G   +      VVDM    G L  A  +   I+     G L + ++
Sbjct: 604 NKGREIHCYLLRK-GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIE---RKGLLQYTSM 659

Query: 408 LSASRLHGRVDIAVEASNQLIESN 431
           ++A  +HG    AVE  +++   N
Sbjct: 660 INAYGMHGCGKAAVELFDKMRHEN 683



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 160/295 (54%), Gaps = 4/295 (1%)

Query: 49  VHSEILKS-GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +HS I K+       F    L+  Y +      A ++FDEM +    ++ +++  Y++ G
Sbjct: 102 LHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNG 161

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +P  AL L+  M    V     +F  ++KAC+ L D+ +G ++H+ +   G+     + +
Sbjct: 162 EPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVN 221

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +LV MY K +D+  ARR+FD    + + V W SI+ +++ + +  E LE+FRE  + +  
Sbjct: 222 ALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM-HMTGP 280

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
            PN + + S + AC        GK  H  V++S    +++ V +AL+ MY +CG +  ++
Sbjct: 281 APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++  +++N  VVT+ S+I G  +  + + +L+ F++MI+ G K ++V+   ++ A
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 197/539 (36%), Positives = 312/539 (57%), Gaps = 5/539 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWP 126
           L++ Y +      AR++FD M   N V++++L+ G++   +   A LLF+ ML   L + 
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +  + A+ ++AC+ L  L  G+Q+H  +   G   +L   +SL+ MY K   +D A  +F
Sbjct: 224 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 283

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  ++ VS+++++  + QN +  EA  +F++    + + P+   + S+I AC+ L  L
Sbjct: 284 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAAL 342

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+ +HG V+  G      + +AL+DMYAKCG ++ S +VFN + +  +V++ +MI G 
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 402

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +GLG+ +  LF EM + G  P+ VTF+ +L ACSHSGLV EG      M   YG+ P 
Sbjct: 403 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 462

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HY C+VD+L R G LDEAY+  +S+ +  D    +W  LL A R++  +D+  + S  
Sbjct: 463 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD--VRVWVALLGACRVYKNIDLGKKVSRM 520

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + E   +    +V LSN Y+ AG ++    +R   K  G  K PGCSW+EI    +AF  
Sbjct: 521 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 580

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+    +  E+   L  +   +K+ GY    T  V  D+E+E +E+ +  HSE+LA+A+G
Sbjct: 581 GDQSHPQSPEIYRELDNILVGIKKLGY-QPDTSFVLQDLEEEEKEKALICHSEKLAIAYG 639

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++S+ +  TI + KNLR+C DCH V K IS +  R  +VRD NRFHHF+NG CSCGDFW
Sbjct: 640 ILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 192/397 (48%), Gaps = 21/397 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   + +G  ++ F    L++ YV+      A  +F  M   ++V++ +++AGY + G
Sbjct: 31  AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 90

Query: 108 --QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN--- 162
                +A LL  +M  + + PN  T   ++   +    L  G  +H +        N   
Sbjct: 91  MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNS 150

Query: 163 -------LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
                  +++ ++L+DMY KC  +  ARRVFD M  RN V+W+++I      ++  +A  
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +F+    Q     +   +AS + ACASL  L  G+  H ++ +SG   +    ++L+ MY
Sbjct: 211 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 270

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           AK G ++ +  +F+ ++    V+Y++++ G  + G    +  +F +M +  ++P+  T V
Sbjct: 271 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330

Query: 336 GVLHACSHSGLVDEG-IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            ++ ACSH   +  G   H   + R  G+  +      ++DM  + GR+D + ++     
Sbjct: 331 SLIPACSHLAALQHGRCSHGSVIIR--GLASETSICNALIDMYAKCGRIDLSRQV---FN 385

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           + P    + W T+++   +HG   +  EA+   +E N
Sbjct: 386 MMPSRDIVSWNTMIAGYGIHG---LGKEATALFLEMN 419



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 155/332 (46%), Gaps = 49/332 (14%)

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML + V PN +TF   +KACS LAD   G+ IH H    G Q +L V ++L+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ-SRDRPNQHMLASVI 237
           +  A  +F  M  R++V+W +++  +A +   H A+        Q  R RPN   L +++
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFND----------VVASALVDMYAKCGSVNYSDKV 287
              A  G L  G   H   +R+    N           ++ +AL+DMYAKCGS+ Y+ +V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG---IKPNDVTFVGVLHACS-- 342
           F+ +   + VT++++I G         +  LF  M+++G   + P  +     L AC+  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASL 238

Query: 343 ---------HSGLVDEGIQ-------HLDSMYRKYGII------------PDAKHYTCVV 374
                    H+ L   G+         L SMY K G+I             D   Y+ +V
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 375 DMLGRTGRLDEAYKLAKSIQ---VDPDGGPLL 403
               + GR +EA+ + K +Q   V+PD   ++
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 1/209 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL     +H+ + KSG  ++    N L++ Y +      A  LFDEM   + VSY++L++
Sbjct: 240 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY+  G+ + A L+F+KM    V P+  T  ++I ACS LA L  G+  H  +   G   
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
              +C++L+DMY KC  +D +R+VF++M  R++VSW ++I  +  +  G EA  +F E N
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMN 419

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGK 250
                 P+      +++AC+  G ++ GK
Sbjct: 420 NLGFP-PDGVTFICLLSACSHSGLVIEGK 447


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 205/565 (36%), Positives = 325/565 (57%), Gaps = 11/565 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++  G+       N ++ CY R      AR++F EM E       S  A  +  GQ
Sbjct: 161 LHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQ 220

Query: 109 PQI---ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            +    A+ LF++M+   +  + FT A+V+ A + + DL+ G Q H  +   GF  N  V
Sbjct: 221 HREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHV 280

Query: 166 CSSLVDMYGKC-NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-GHEALEMFREFNYQ 223
            S L+D+Y KC   +   R+VF+ +   ++V W ++I   +Q      + +  FRE  + 
Sbjct: 281 GSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHN 340

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVN 282
               P+      V +AC++L     GK  H + ++S   +N V V +ALV MY+KCG+V+
Sbjct: 341 GF-HPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVH 399

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            + +VF+ +   ++V+  SMI G A++G+   SL LF  M+ + I PN +TF+ VL AC 
Sbjct: 400 DARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACV 459

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+G V+EG ++ + M  ++ I P+A+HY+C++D+LGR G+L EA ++ +++  +P  G +
Sbjct: 460 HTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNP--GSI 517

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
            W TLL A R HG V++AV+A+N+ ++     A  YV LSN YA A  WE   +++  M+
Sbjct: 518 EWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMR 577

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             G+ K+PGCSW+EI  + + F A +       E+   + E+ RKMK+ GYV      + 
Sbjct: 578 ERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALV 637

Query: 523 VD--VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
            D  VE + +E  +  HSE+LA+AFGLIS  + + I ++KNLR+C DCH+  KLIS I  
Sbjct: 638 KDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITG 697

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+  VRD +RFH F+ G CSCGD+W
Sbjct: 698 REITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 176/333 (52%), Gaps = 27/333 (8%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            N F+ N LIN Y +     +ARQ+FDE+ +P++VSY +L+A Y + G+ + AL LF ++
Sbjct: 73  PNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEV 132

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                  + FT + VI AC     L+  +Q+H  +   G+     V ++++  Y +   +
Sbjct: 133 RELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFL 190

Query: 180 DGARRVFDLM---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
           + ARRVF  M   G R+ VSW ++IVA  Q+ +G EA+E+FRE   +   + +   +ASV
Sbjct: 191 NEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGL-KVDMFTMASV 249

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC-GSVNYSDKVFNRISNPS 295
           + A   +  LV G   HG++++SG   N  V S L+D+Y+KC G +    KVF  I+ P 
Sbjct: 250 LTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPD 309

Query: 296 VVTYTSMIVGAAKY-GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------H 343
           +V + +MI G ++Y  L    +  F EM   G  P+D +FV V  ACS           H
Sbjct: 310 LVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVH 369

Query: 344 SGLVDEGIQH--------LDSMYRKYGIIPDAK 368
           +  +   I +        L +MY K G + DA+
Sbjct: 370 ALAIKSDIPYNRVSVNNALVAMYSKCGNVHDAR 402



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 40/315 (12%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF  ++KAC    DLITGK +H          +  + +    +Y KC  +  A+  FDL 
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFN-------------YQSRD--RPNQHM-- 232
              NV S+ ++I A+A+++  H A ++F E               Y  R   RP   +  
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 233 -------------LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279
                        L+ VI AC     LV  +  H  VV  G +    V +A++  Y++ G
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 280 SVNYSDKVFNRISNP---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
            +N + +VF  +        V++ +MIV   ++  G  +++LF EM+ RG+K +  T   
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR-TGRLDEAYKLAKSIQV 395
           VL A +    +  G+Q    M  K G   ++   + ++D+  +  G + E  K+ + I  
Sbjct: 249 VLTAFTCVKDLVGGMQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 396 DPDGGPLLWGTLLSA 410
            PD   +LW T++S 
Sbjct: 308 -PD--LVLWNTMISG 319


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 207/552 (37%), Positives = 324/552 (58%), Gaps = 14/552 (2%)

Query: 59  LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           L N  + + L+  Y +     +A++ FD M + + +++T++ A   + G+ + A    ++
Sbjct: 229 LRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGA----RE 284

Query: 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178
           ML  L   +   +  +++  S   DL   +++ + +E        VV  +LV++YGKC  
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVA-TTVVAGTLVNLYGKCGR 343

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD ARRV D M  R  VSWT++I A+AQN    EA+ +F+  + +  + P+   L SV++
Sbjct: 344 VDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAE-PSDITLISVVD 402

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRIS--NP 294
           +CA LG L  GK  H  + RS   F+   ++ +A++ MY KCG++  + +VF  +     
Sbjct: 403 SCAVLGTLSLGKRIHARI-RSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTR 461

Query: 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEM-ISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353
           SVVT+T+MI   A+ G+G  +++LF EM I  G +PN VTF+ VL ACSH G +++  +H
Sbjct: 462 SVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEH 521

Query: 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413
             SM   +G+ P   HY C+VD+LGR GRL EA KL      D +   + W   LSA ++
Sbjct: 522 FCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLR-HKDFEADVVCWIAFLSACQM 580

Query: 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
           +G ++ +  A+ ++ E   +     V LSN YA  G   +V  +R+EMK +G+ K  G S
Sbjct: 581 NGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRS 640

Query: 474 WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
           W+EI ++ + F   +    R  E+ S L  L R++KE GYV   T +V  DV++E + ++
Sbjct: 641 WIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVP-DTKMVLRDVDEEKKAQL 699

Query: 534 VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
           +G HSERLA+A G+IS P G T+R++KNLR+C DCH   K IS IV R  +VRD +RFHH
Sbjct: 700 LGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHH 759

Query: 594 FRNGSCSCGDFW 605
           F++G CSCGD+W
Sbjct: 760 FKDGVCSCGDYW 771



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 183/395 (46%), Gaps = 34/395 (8%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMGQPQIALLLFQKM 119
           + FT N +I  Y R+ +   AR+LF  M+   +VVS+  L+AGY    + + A  LF++M
Sbjct: 103 DAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRM 162

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
               +W +  T  +V++  +    L   +++   I   G   +   C++++  YGK   V
Sbjct: 163 P---LW-DTVTCTSVLQGYAHNGHLAEAQELFDRIGGAG-DRDATACNAMIAAYGKNARV 217

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE---------------FNYQS 224
           D A  +F  +  RN  SW+ +++ +AQN     A + F                  + Q 
Sbjct: 218 DLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQG 277

Query: 225 RDRPNQHML-----ASVINACASL-GRLVSGKVAHGVVVRSGCEF----NDVVASALVDM 274
             R  + ML       VI   A L G   +G +     + S  E       VVA  LV++
Sbjct: 278 ELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNL 337

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y KCG V+ + +V + +   + V++T+MI   A+ G    +++LF  M   G +P+D+T 
Sbjct: 338 YGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITL 397

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH-YTCVVDMLGRTGRLDEAYKLAKSI 393
           + V+ +C+  G +  G + + +  R   +   +      V+ M G+ G L+ A ++ +S+
Sbjct: 398 ISVVDSCAVLGTLSLG-KRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESV 456

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            +      + W  ++ A   +G  + A+E   +++
Sbjct: 457 PLRTR-SVVTWTAMIRAYAQNGVGEEAIELFQEMV 490



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 187/419 (44%), Gaps = 45/419 (10%)

Query: 13  LAASSLTRQNKRSSCHTKAHFIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLI 69
           +AA++L R+           F ++++ C   + L     +H EI +S    N    N LI
Sbjct: 1   MAAAALARR-----------FEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLI 49

Query: 70  NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF 129
           + + +      AR +F+ +  PN  S++ ++  Y++  +   A  LF  M G     + F
Sbjct: 50  DLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGF----DAF 105

Query: 130 TFATVIKACSMLADLITGKQI-HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188
           T+  +I A + +  L   +++ H  I       ++V  + LV  Y + + ++ A  +F  
Sbjct: 106 TWNIMIAAYARINRLDDARELFHGMISG----RDVVSWAILVAGYARHDRLEEASALFRR 161

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMF-REFNYQSRDRPNQHMLASVINA-CASLGRL 246
           M   + V+ TS++  +A N    EA E+F R      RD       A+  NA  A+ G+ 
Sbjct: 162 MPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRD-------ATACNAMIAAYGKN 214

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
               +A G+  +     N    S L+  YA+ G ++ + K F+R+     + +T+M    
Sbjct: 215 ARVDLAEGLFAQIKLR-NAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVL 273

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           +  G  R + ++   + +  +    + +  +L   S +G +DE  +   +M  ++  +  
Sbjct: 274 SDQGELRGAREMLRYLSAVDV----IAWNALLEGYSRTGDLDEVRRLFSAM--EHRTVAT 327

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
                 +V++ G+ GR+D+A ++  ++   P    + W  +++A   +G    A EA N
Sbjct: 328 TVVAGTLVNLYGKCGRVDDARRVLDAM---PVRTSVSWTAMIAAYAQNGN---AAEAIN 380


>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
 gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
          Length = 622

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 191/533 (35%), Positives = 311/533 (58%), Gaps = 10/533 (1%)

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMG----QPQIALLLFQKMLGNLVWPNEFTFATV 134
           ++A  +F+ ++EP    Y +LM G++  G    +P  AL L+  ML   V P+ +TF  V
Sbjct: 94  ELAASIFESLVEPEAFDYNTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFV 153

Query: 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--R 192
           +KAC+ LA L  G+Q+  HIE  G Q++  V +SL+  YGKC +   AR  FD +    R
Sbjct: 154 LKACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEER 213

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
              SW++++ A+ +     E LE F         RP++  + S I+ACA LG    G+  
Sbjct: 214 TTASWSALLAAYTKAGLWGECLESFGAMVLDGW-RPDESSMVSAISACAHLGAFDVGRSI 272

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H  ++R+    N ++ ++LVDMYAKCGS+  +  VF+ + + +   Y++M+ G A +G G
Sbjct: 273 HCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDG 332

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372
           R +L +F+ M+  G  P+   +VGVL+ACS +GL+++G++  D M  ++   P+A+HY C
Sbjct: 333 RKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGC 392

Query: 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           +VD++ R GRLD+A  L  S+   P      W +LL+A R+HG +D+A  A  +L     
Sbjct: 393 MVDLMARAGRLDDARALIGSMPTGPTD--TAWRSLLNACRIHGDLDLAESALEELRSLGA 450

Query: 433 QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFE 492
             A  YV +++ +A A  W    + R+E    G+ + PG S VE+R + + F + +    
Sbjct: 451 ANAGDYVIVADMHARAKNWAAAAAFRTEAVDWGLAQSPGFSAVEVRGELHRFVSQDMSHP 510

Query: 493 RGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPK 552
           R  ++  +L ++E +++  GY    T  V +DV +E +  +V  HS++LA+AFGL+S P+
Sbjct: 511 RTRDIYEMLHQMEWQLRFDGYR-PDTSEVALDVGEEEKRHVVAAHSQKLAMAFGLLSTPE 569

Query: 553 GITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           G  +R++ NLRM ++CH    LIS+I  R+ V+RD NR H FR G+C+C D+W
Sbjct: 570 GAPVRVVTNLRMSKECHAYSALISEIFGREIVIRDRNRLHRFRRGACTCRDYW 622



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 8/200 (4%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++  +  +  C HL +     S+H  +L++    NT     L++ Y +    + A  +FD
Sbjct: 250 ESSMVSAISACAHLGAFDVGRSIHCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFD 309

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            M + N  +Y+++++G    G  + AL +F  M+     P+   +  V+ ACS    L  
Sbjct: 310 AMDDKNAWAYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLED 369

Query: 147 GKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV-VSWTSIIVA- 203
           G +    +     F  N      +VD+  +   +D AR +   M       +W S++ A 
Sbjct: 370 GLRCFDRMRLEHKFAPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNAC 429

Query: 204 --HAQNAQGHEALEMFREFN 221
             H        ALE  R   
Sbjct: 430 RIHGDLDLAESALEELRSLG 449


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 332/596 (55%), Gaps = 18/596 (3%)

Query: 17  SLTRQNKRSSCHTKA-HFIQQLQECKHL---ISLASVHSEILKSGFLSNTFTLNHLINCY 72
           SL R   RS     A  F   L+ C  L   +S   +H  + K G  +  F L  LI+ Y
Sbjct: 39  SLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMY 98

Query: 73  VRLKKTQVARQLFDEMLEPNVVS--YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130
            +      AR++F+E  + + +S  Y +L++GY    +   A  +F++M    V  +  T
Sbjct: 99  CKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVT 158

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
              ++  C++   L  G+ +H      G    + V +S + MY KC  V+  RR+FD M 
Sbjct: 159 MLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMP 218

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            + +++W ++I  ++QN   ++ LE++ +    S   P+   L SV+++CA LG    G 
Sbjct: 219 VKGLITWNAVISGYSQNGLAYDVLELYEQMK-SSGVCPDPFTLVSVLSSCAHLGAKKIGH 277

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
               +V  +G   N  V++A + MYA+CG++  +  VF+ +   S+V++T+MI     +G
Sbjct: 278 EVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHG 337

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
           +G   L LF++MI RGI+P+   FV VL ACSHSGL D+G++   +M R+Y + P  +HY
Sbjct: 338 MGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY 397

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           +C+VD+LGR GRLDEA +  +S+ V+PDG   +WG LL A ++H  VD+A  A  ++IE 
Sbjct: 398 SCLVDLLGRAGRLDEAMEFIESMPVEPDGA--VWGALLGACKIHKNVDMAELAFAKVIEF 455

Query: 431 NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNAL 490
                  YV +SN Y+ +   E +  +R  M+     K+PG S+VE + + + F AG+  
Sbjct: 456 EPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRS 515

Query: 491 FERGSEVLSLLRELERKMKE-RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLIS 549
            E+  EV  +L ELE  + E  G +    G    +V    RE     HSERLA+AFG+++
Sbjct: 516 HEQTEEVHRMLDELETSVMELAGNMDCDRG---EEVSSTTRE-----HSERLAIAFGILN 567

Query: 550 IPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              G  I ++KNLR+C DCH   K +S IV+R FVVRD +RFH+F++G CSC D+W
Sbjct: 568 SIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 196/577 (33%), Positives = 323/577 (55%), Gaps = 11/577 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L  C +L +L  VH+ ++  G   N    N L+  Y +      A+++   M + +
Sbjct: 365 FTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRD 424

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIH 151
            V++ +L+ G+ +  +P  A+  F  +    V  N  T   ++ A     DL+  G  IH
Sbjct: 425 EVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIH 484

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            HI   GF+    V SSL+ MY +C D++ +  +FD++  +N  +W +I+ A+A    G 
Sbjct: 485 AHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGE 544

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EAL++  +         +Q   +       +L  L  G+  H ++++ G E ND V +A 
Sbjct: 545 EALKLIIKMR-NDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNAT 603

Query: 272 VDMYAKCGSVNYSDKVFNRISNP---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           +DMY KCG +   D VF  +  P   S  ++  +I   A++G  + + + F+EM+  G++
Sbjct: 604 MDMYGKCGEI---DDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLR 660

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           P+ VTFV +L ACSH GLVDEG+ +  SM  K+G+    +H  C++D+LGR G+L EA  
Sbjct: 661 PDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAEN 720

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448
               + V P    L+W +LL+A ++HG +++A +A+++L E +    +AYV  SN  A  
Sbjct: 721 FINKMPVPPT--DLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCAST 778

Query: 449 GEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508
             W +V ++R +M+   I K+P CSWV++++Q   F  G+    + +E+ + L EL++ +
Sbjct: 779 RRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKII 838

Query: 509 KERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDC 568
           +E GY+   T     D ++E +E  +  HSER+ALAFGLI+  +G  +RI KNLR+C DC
Sbjct: 839 REAGYM-PDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDC 897

Query: 569 HDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           H VFK++S I+ R  ++RD  RFHHF +G CSC D+W
Sbjct: 898 HSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 212/440 (48%), Gaps = 40/440 (9%)

Query: 12  TLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINC 71
           +  A+SL     RS C T+  F               VH+ ++K G   + F    L++ 
Sbjct: 58  SYVAASLVTACDRSGCMTEGAF--------------QVHAHVIKCGLACDVFVGTSLLHF 103

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y           +F E+ EPN+VS+TSLM GY   G  +  + +++++  + V+ NE   
Sbjct: 104 YGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAM 163

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
           ATVI++C +L D + G Q+   +   G    + V +SL+ M+G C+ ++ A  VFD M  
Sbjct: 164 ATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKE 223

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+ +SW SII A   N    ++LE F +  Y +  + +   +++++  C S   L  G+ 
Sbjct: 224 RDTISWNSIITASVHNGHCEKSLEYFSQMRY-THAKTDYITISALLPVCGSAQNLRWGRG 282

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            HG+VV+SG E N  V ++L+ MY++ G    ++ VF+++    ++++ SM+      G 
Sbjct: 283 LHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGN 342

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACS--------HSGLVDEGIQHLDSMYRKYGI 363
              +L+L  EM+      N VTF   L AC         H+ ++  G+ H         I
Sbjct: 343 YPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKIVHAFVILLGLHH-------NLI 395

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
           I +A     +V M G+ G +  A ++ K   + PD   + W  L+     +   + A+EA
Sbjct: 396 IGNA-----LVTMYGKFGSMAAAQRVCK---IMPDRDEVTWNALIGGHADNKEPNAAIEA 447

Query: 424 SNQLIESNQQVANAYVTLSN 443
            N L E  + V   Y+T+ N
Sbjct: 448 FNLLRE--EGVPVNYITIVN 465



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 194/399 (48%), Gaps = 12/399 (3%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +    + A+ +FD+M E N  S+ +LM+G++ +G  Q A+  F  ML + V P+ +  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 132 ATVIKACSMLADLITGK-QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           A+++ AC     +  G  Q+H H+   G   ++ V +SL+  YG    V     VF  + 
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVS 248
             N+VSWTS++V +A N    E + ++R      RD    N++ +A+VI +C  L   + 
Sbjct: 122 EPNIVSWTSLMVGYAYNGCVKEVMSVYRRLR---RDGVYCNENAMATVIRSCGVLVDKML 178

Query: 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           G    G V++SG +    VA++L+ M+  C S+  +  VF+ +     +++ S+I  +  
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVH 238

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
            G    SL+ F++M     K + +T   +L  C  +  +  G + L  M  K G+  +  
Sbjct: 239 NGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWG-RGLHGMVVKSGLESNVC 297

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
               ++ M  + G+ ++A  +   ++   +   + W +++++   +G    A+E   +++
Sbjct: 298 VCNSLLSMYSQAGKSEDAEFVFHKMR---ERDLISWNSMMASHVDNGNYPRALELLIEML 354

Query: 429 ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           ++ +  A  YVT +   +     E +  + + +   G+H
Sbjct: 355 QTRK--ATNYVTFTTALSACYNLETLKIVHAFVILLGLH 391



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 138/286 (48%), Gaps = 12/286 (4%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY K   ++ A+ VFD M  RN  SW +++    +     +A++ F     +   RP+ +
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHM-LEHGVRPSSY 59

Query: 232 MLASVINACASLGRLVSGKV-AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           + AS++ AC   G +  G    H  V++ G   +  V ++L+  Y   G V   D VF  
Sbjct: 60  VAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKE 119

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE- 349
           I  P++V++TS++VG A  G  +  + ++  +   G+  N+     V+ +C    LVD+ 
Sbjct: 120 IEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC--GVLVDKM 177

Query: 350 -GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G Q L S+  K G+         ++ M G    ++EA  +   ++   +   + W +++
Sbjct: 178 LGYQVLGSVI-KSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMK---ERDTISWNSII 233

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
           +AS  +G  + ++E  +Q+  ++ +    Y+T+S    + G  +N+
Sbjct: 234 TASVHNGHCEKSLEYFSQMRYTHAKT--DYITISALLPVCGSAQNL 277


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 321/567 (56%), Gaps = 10/567 (1%)

Query: 41  KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML-EPNVVSYTSL 99
           KHL     +HS +LK GF S    +  L++ Y +  +   A  +F  M    NVVS+T++
Sbjct: 272 KHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAM 331

Query: 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGF 159
           + G I  G   +A  LF +M  + V PN+ T++T++     +++     QIH  +    +
Sbjct: 332 IDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEASFPPQIHAQVIKTNY 387

Query: 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFRE 219
           +    V ++L+  Y K    + A  +F ++  ++VVSW++++  +AQ    + A   F +
Sbjct: 388 ECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIK 447

Query: 220 FNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
                  +PN+  ++S I+ACAS    V  G+  H + ++  C     V+SALV MYA+ 
Sbjct: 448 MTMHGL-KPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARK 506

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           GS+  +  VF R ++  ++++ SM+ G A++G  + +LD+F +M   GI  + +TF+ V+
Sbjct: 507 GSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVI 566

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
             C+H+GLV+EG Q+ D M R YGI P   HY C+VD+  R G+LDE   L + +     
Sbjct: 567 MGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPF--P 624

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
            GP +W  LL A R+H  V++   A+ +L+      +  YV LSN Y+ AG+W+    +R
Sbjct: 625 AGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVR 684

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             M    + KE GCSW++I+++ + F A +       ++ + LR +  K+K+ GY    T
Sbjct: 685 KLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYC-PDT 743

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
             V  DV ++ +E ++ +HSERLALAFGLI+ P    + I KNLR+  D H V K++S+I
Sbjct: 744 SFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEI 803

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
            +R+ V+RD  RFHHF++G CSCGDFW
Sbjct: 804 EDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 2/272 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           L++ Y+        R++F+ ML+ NVV++TSL+ GYI  G     + LF +M    VWPN
Sbjct: 97  LVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPN 156

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
            FTF++V+   +    +  G+ +H     FG    + VC+SL++MY KC  V+ AR VF 
Sbjct: 157 PFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 216

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247
            M  R++VSW +++     N +  EAL++F + +  S     +   ++VIN CA+L  L 
Sbjct: 217 RMETRDMVSWNTLMAGLVLNGRDLEALQLFHD-SRSSITMLTESTYSTVINLCANLKHLG 275

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGA 306
             +  H  V++ G      V +AL+D Y K G ++ +  VF  +S + +VV++T+MI G 
Sbjct: 276 LARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGC 335

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
            + G    +  LF+ M   G+ PND+T+  +L
Sbjct: 336 IQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 180/386 (46%), Gaps = 21/386 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH++ +K G  S  F  N L+N Y +    + AR +F  M   ++VS+ +LMAG +  G+
Sbjct: 179 VHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGR 238

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL LF     ++    E T++TVI  C+ L  L   +Q+H+ +   GF     V ++
Sbjct: 239 DLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTA 298

Query: 169 LVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           L+D Y K   +D A  VF LM G +NVVSWT++I    QN     A  +F     +    
Sbjct: 299 LMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMR-EDGVA 357

Query: 228 PNQHMLASVINAC-ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           PN    ++++    AS    +     H  V+++  E    V +AL+  Y+K  S   +  
Sbjct: 358 PNDLTYSTILTVSEASFPPQI-----HAQVIKTNYECTPTVGTALMVSYSKLCSTEEALS 412

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-SHSG 345
           +F  I    VV++++M+   A+ G    + + F +M   G+KPN+ T    + AC S + 
Sbjct: 413 IFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAA 472

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCV----VDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
            VD G Q     +    I        CV    V M  R G ++ A  + +  Q D D   
Sbjct: 473 GVDLGRQ-----FHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFER-QTDRD--L 524

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQL 427
           L W ++LS    HG    A++   Q+
Sbjct: 525 LSWNSMLSGYAQHGYSQKALDVFRQM 550



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 9/257 (3%)

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +IK C  + D + GKQ+H      G  + ++ V +SLVDMY   + V   R+VF+ M  R
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252
           NVV+WTS++  + Q     + + +F     +    PN    +SV++  AS G +  G+  
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGV-WPNPFTFSSVLSMVASQGMVDLGQHV 179

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG 312
           H   ++ GC     V ++L++MYAKCG V  +  VF R+    +V++ +++ G    G  
Sbjct: 180 HAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRD 239

Query: 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACS---HSGLVDEGIQHLDSMYRKYGIIPDAKH 369
             +L LF++  S      + T+  V++ C+   H GL     + L S   K+G       
Sbjct: 240 LEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLA----RQLHSSVLKHGFHSYGNV 295

Query: 370 YTCVVDMLGRTGRLDEA 386
            T ++D   + G+LD+A
Sbjct: 296 MTALMDAYNKAGQLDKA 312


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 197/539 (36%), Positives = 312/539 (57%), Gaps = 5/539 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWP 126
           L++ Y +      AR++FD M   N V++++L+ G++   +   A LLF+ ML   L + 
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +  + A+ ++AC+ L  L  G+Q+H  +   G   +L   +SL+ MY K   +D A  +F
Sbjct: 339 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 398

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  ++ VS+++++  + QN +  EA  +F++    + + P+   + S+I AC+ L  L
Sbjct: 399 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAAL 457

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+ +HG V+  G      + +AL+DMYAKCG ++ S +VFN + +  +V++ +MI G 
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 517

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +GLG+ +  LF EM + G  P+ VTF+ +L ACSHSGLV EG      M   YG+ P 
Sbjct: 518 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPR 577

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HY C+VD+L R G LDEAY+  +S+ +  D    +W  LL A R++  +D+  + S  
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD--VRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + E   +    +V LSN Y+ AG ++    +R   K  G  K PGCSW+EI    +AF  
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+    +  E+   L  +   +K+ GY    T  V  D+E+E +E+ +  HSE+LA+A+G
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGY-QPDTSFVLQDLEEEEKEKALICHSEKLAIAYG 754

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++S+ +  TI + KNLR+C DCH V K IS +  R  +VRD NRFHHF+NG CSCGDFW
Sbjct: 755 ILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 176/372 (47%), Gaps = 51/372 (13%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA--LLLFQKMLGNLVWPNEFTFATVIKAC 138
           A  LFD++  P+V +Y  L+  Y +      A  L L+++ML + V PN +TF   +KAC
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           S LAD   G+ IH H    G Q +L V ++L+DMY KC  +  A  +F  M  R++V+W 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQ-SRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           +++  +A +   H A+        Q  R RPN   L +++   A  G L  G   H   +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 258 RSGCEFND----------VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           R+    N           ++ +AL+DMYAKCGS+ Y+ +VF+ +   + VT++++I G  
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 308 KYGLGRFSLDLFNEMISRG---IKPNDVTFVGVLHACS-----------HSGLVDEGIQ- 352
                  +  LF  M+++G   + P  +     L AC+           H+ L   G+  
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 353 ------HLDSMYRKYGII------------PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
                  L SMY K G+I             D   Y+ +V    + GR +EA+ + K +Q
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ 433

Query: 395 ---VDPDGGPLL 403
              V+PD   ++
Sbjct: 434 ACNVEPDAATMV 445



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 192/397 (48%), Gaps = 21/397 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   + +G  ++ F    L++ YV+      A  +F  M   ++V++ +++AGY + G
Sbjct: 146 AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 205

Query: 108 --QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN--- 162
                +A LL  +M  + + PN  T   ++   +    L  G  +H +        N   
Sbjct: 206 MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNS 265

Query: 163 -------LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
                  +++ ++L+DMY KC  +  ARRVFD M  RN V+W+++I      ++  +A  
Sbjct: 266 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 325

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +F+    Q     +   +AS + ACASL  L  G+  H ++ +SG   +    ++L+ MY
Sbjct: 326 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 385

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           AK G ++ +  +F+ ++    V+Y++++ G  + G    +  +F +M +  ++P+  T V
Sbjct: 386 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445

Query: 336 GVLHACSHSGLVDEG-IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            ++ ACSH   +  G   H   + R  G+  +      ++DM  + GR+D + ++     
Sbjct: 446 SLIPACSHLAALQHGRCSHGSVIIR--GLASETSICNALIDMYAKCGRIDLSRQV---FN 500

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           + P    + W T+++   +HG   +  EA+   +E N
Sbjct: 501 MMPSRDIVSWNTMIAGYGIHG---LGKEATALFLEMN 534



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 1/209 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL     +H+ + KSG  ++    N L++ Y +      A  LFDEM   + VSY++L++
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 414

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY+  G+ + A L+F+KM    V P+  T  ++I ACS LA L  G+  H  +   G   
Sbjct: 415 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 474

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
              +C++L+DMY KC  +D +R+VF++M  R++VSW ++I  +  +  G EA  +F E N
Sbjct: 475 ETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMN 534

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGK 250
                 P+      +++AC+  G ++ GK
Sbjct: 535 NLGFP-PDGVTFICLLSACSHSGLVIEGK 562



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 20/111 (18%)

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMI--VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           G ++ +  +F++I +P V TY  +I    ++        L L+  M+   + PN+ TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 337 VLHACS-----------HSGLVDEGIQ-------HLDSMYRKYGIIPDAKH 369
            L ACS           H   +  G+Q        L  MY K   +PDA H
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 197/539 (36%), Positives = 312/539 (57%), Gaps = 5/539 (0%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-LVWP 126
           L++ Y +      AR++FD M   N V++++L+ G++   +   A LLF+ ML   L + 
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +  + A+ ++AC+ L  L  G+Q+H  +   G   +L   +SL+ MY K   +D A  +F
Sbjct: 339 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 398

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  ++ VS+++++  + QN +  EA  +F++    + + P+   + S+I AC+ L  L
Sbjct: 399 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAAL 457

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+ +HG V+  G      + +AL+DMYAKCG ++ S +VFN + +  +V++ +MI G 
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 517

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
             +GLG+ +  LF EM + G  P+ VTF+ +L ACSHSGLV EG      M   YG+ P 
Sbjct: 518 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 577

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +HY C+VD+L R G LDEAY+  +S+ +  D    +W  LL A R++  +D+  + S  
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD--VRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + E   +    +V LSN Y+ AG ++    +R   K  G  K PGCSW+EI    +AF  
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+    +  E+   L  +   +K+ GY    T  V  D+E+E +E+ +  HSE+LA+A+G
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGY-QPDTSFVLQDLEEEEKEKALICHSEKLAIAYG 754

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++S+ +  TI + KNLR+C DCH V K IS +  R  +VRD NRFHHF+NG CSCGDFW
Sbjct: 755 ILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 176/372 (47%), Gaps = 51/372 (13%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA--LLLFQKMLGNLVWPNEFTFATVIKAC 138
           A  LFD++  P+V +Y  L+  Y +      A  L L+++ML + V PN +TF   +KAC
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           S LAD   G+ IH H    G Q +L V ++L+DMY KC  +  A  +F  M  R++V+W 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQ-SRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           +++  +A +   H A+        Q  R RPN   L +++   A  G L  G   H   +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 258 RSGCEFND----------VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
           R+    N           ++ +AL+DMYAKCGS+ Y+ +VF+ +   + VT++++I G  
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 308 KYGLGRFSLDLFNEMISRG---IKPNDVTFVGVLHACS-----------HSGLVDEGIQ- 352
                  +  LF  M+++G   + P  +     L AC+           H+ L   G+  
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 353 ------HLDSMYRKYGII------------PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
                  L SMY K G+I             D   Y+ +V    + GR +EA+ + K +Q
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ 433

Query: 395 ---VDPDGGPLL 403
              V+PD   ++
Sbjct: 434 ACNVEPDAATMV 445



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 192/397 (48%), Gaps = 21/397 (5%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   + +G  ++ F    L++ YV+      A  +F  M   ++V++ +++AGY + G
Sbjct: 146 AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 205

Query: 108 --QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN--- 162
                +A LL  +M  + + PN  T   ++   +    L  G  +H +        N   
Sbjct: 206 MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNS 265

Query: 163 -------LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE 215
                  +++ ++L+DMY KC  +  ARRVFD M  RN V+W+++I      ++  +A  
Sbjct: 266 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 325

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275
           +F+    Q     +   +AS + ACASL  L  G+  H ++ +SG   +    ++L+ MY
Sbjct: 326 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 385

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           AK G ++ +  +F+ ++    V+Y++++ G  + G    +  +F +M +  ++P+  T V
Sbjct: 386 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445

Query: 336 GVLHACSHSGLVDEG-IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
            ++ ACSH   +  G   H   + R  G+  +      ++DM  + GR+D + ++     
Sbjct: 446 SLIPACSHLAALQHGRCSHGSVIIR--GLASETSICNALIDMYAKCGRIDLSRQV---FN 500

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           + P    + W T+++   +HG   +  EA+   +E N
Sbjct: 501 MMPSRDIVSWNTMIAGYGIHG---LGKEATALFLEMN 534



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 1/209 (0%)

Query: 42  HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           HL     +H+ + KSG  ++    N L++ Y +      A  LFDEM   + VSY++L++
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 414

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY+  G+ + A L+F+KM    V P+  T  ++I ACS LA L  G+  H  +   G   
Sbjct: 415 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 474

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
              +C++L+DMY KC  +D +R+VF++M  R++VSW ++I  +  +  G EA  +F E N
Sbjct: 475 ETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMN 534

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGK 250
                 P+      +++AC+  G ++ GK
Sbjct: 535 NLGFP-PDGVTFICLLSACSHSGLVIEGK 562



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 20/111 (18%)

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMI--VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVG 336
           G ++ +  +F++I +P V TY  +I    ++        L L+  M+   + PN+ TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 337 VLHACS-----------HSGLVDEGIQ-------HLDSMYRKYGIIPDAKH 369
            L ACS           H   +  G+Q        L  MY K   +PDA H
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 225/672 (33%), Positives = 351/672 (52%), Gaps = 74/672 (11%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQL----QECKHLISLASVHSEILKSGF 58
           K+  + LI +   + +T+ N+R      A F  ++    Q CK+L +L  +H   +KSG 
Sbjct: 142 KAAEKLLIDSYGPTVITQTNQRRR-RMNALFAWKITRKDQYCKNLRALTQIHGFFIKSGV 200

Query: 59  LSNTFTLNHLI-NCYVRLKKT-QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
            ++++ +  LI +C + +      AR+L     EP+   + +L+ GY    +P  ++ +F
Sbjct: 201 DTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVF 260

Query: 117 QKML-GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
            +M+    ++P+ F+FA V+KA +    L TG Q+H      G   +L V ++L+ MYG+
Sbjct: 261 VEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGE 320

Query: 176 C-------------------------------NDVDGARRVFDLMGCRN----------- 193
           C                               NDV GAR +FD M  RN           
Sbjct: 321 CGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGY 380

Query: 194 --------------------VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233
                                VSW+++IV  + N   +E+   FRE   ++  RPN+  L
Sbjct: 381 IKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL-LRAEMRPNEVSL 439

Query: 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN 293
             V++AC+  G    GK  HG V +SG  +   V +AL+DMY++CG+V  +  VF  +  
Sbjct: 440 TGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 499

Query: 294 P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             S+V++TSMI G A +G G  ++ +FNEM   G+ P++++F+ +L+ACSH+GL+ EG  
Sbjct: 500 KRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEG 559

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
           +   M R Y I P  +HY C+VD+ GR+G+L +AY     + + P    ++W TLL A  
Sbjct: 560 YFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTA--IVWRTLLGACS 617

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
            HG +++A +   +L E +   +   V LSN YA AG+W++V S+R  M    I K    
Sbjct: 618 SHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAW 677

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           S VE+    Y F A     E   E    L+E+  ++++      +      DVE+E +E+
Sbjct: 678 SLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKED 737

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
            V  HSE+LALAF L  +PKG  IRI+KNLR+CRDCH V KL S +   + V+RD NRFH
Sbjct: 738 QVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFH 797

Query: 593 HFRNGSCSCGDF 604
            F++GSCSCGD+
Sbjct: 798 SFKDGSCSCGDY 809


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 205/561 (36%), Positives = 321/561 (57%), Gaps = 6/561 (1%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L  +H+ ++++GF      L  L+   V +     ARQ+FDEM +P +  + +L  GY+ 
Sbjct: 27  LKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVR 86

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
              P  ++LL++KM    V P+EFT+  V+KA S L  L  G  +H H+   GF+   +V
Sbjct: 87  NQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIV 146

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            + LV MY K  ++  A  +F+ M  +++V+W + I    Q      ALE F +    + 
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAV 206

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
            + +   + S+++AC  LG L  G+  +    +   E N +V +A +DM+ KCGS   + 
Sbjct: 207 -QFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAAR 265

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+ +   +VV++++MIVG A  G    +L LF  M + G++PN VTF+GVL ACSH+G
Sbjct: 266 VLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 346 LVDEGIQHLDSMYR--KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           LV+EG ++   M R     + P  +HY C+VD+LGR+G L+EAY+  K ++V+PD G  +
Sbjct: 326 LVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTG--I 383

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG LL A  +H  + +  + ++ L+E+   + + +V LSN YA AG+W+ V  +RS+M++
Sbjct: 384 WGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRK 443

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            G  K    S VE   + + F  G+    +   +   L E+ +K++  GYV   TG VF 
Sbjct: 444 LGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYV-PDTGSVFH 502

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           DVE E +E  +  HSE+LA+AFGLI+   G  IR+MKNLR C DCH   K +S +  R+ 
Sbjct: 503 DVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREI 562

Query: 584 VVRDVNRFHHFRNGSCSCGDF 604
           ++RD NRFHHFRNG      F
Sbjct: 563 IMRDKNRFHHFRNGDKEWSKF 583


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 191/559 (34%), Positives = 322/559 (57%), Gaps = 5/559 (0%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           + H++I++ G   +  T N LIN Y +      AR+ F+EM   ++VS+ +++       
Sbjct: 64  ACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNA 123

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + AL L  +M       NEFT ++V+  C+    ++   Q+H          N  V +
Sbjct: 124 EDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGT 183

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +L+ +Y KC+ +  A ++F+ M  +N V+W+S++  + QN    EAL +FR       D+
Sbjct: 184 ALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQ 243

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            +  M++S ++ACA L  L+ GK  H +  +SG   N  V+S+L+DMYAKCG +  +  V
Sbjct: 244 -DPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLV 302

Query: 288 FNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           F  +    S+V + +MI G A++     ++ LF +M  RG  P+DVT+V VL+ACSH GL
Sbjct: 303 FQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGL 362

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
            +EG ++ D M R++ + P   HY+C++D+LGR G + +AY L + +  +      +WG+
Sbjct: 363 HEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSS--MWGS 420

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466
           LL++ +++G ++ A  A+  L E     A  ++ L+N YA   +W+ V   R  ++ T +
Sbjct: 421 LLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDV 480

Query: 467 HKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVE 526
            KE G SW+EI+++ ++F  G     +  ++ + L  L  ++K+  Y    T     DVE
Sbjct: 481 RKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNY-KVDTSNDLHDVE 539

Query: 527 DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
           +  ++ ++  HSE+LA+ FGL+ +P+ I IRI+KNLR+C DCH   KL+S    R+ +VR
Sbjct: 540 ENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVR 599

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D NRFHHF++G CSCG+FW
Sbjct: 600 DTNRFHHFKDGFCSCGEFW 618


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 297/486 (61%), Gaps = 8/486 (1%)

Query: 124 VWPNEFTFATVIKACS-MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           V P++  F   + AC   LADL  GK IH+ +   G + N VV ++LV+MYGK   +D A
Sbjct: 6   VLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEA 65

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINAC 240
            RVF  +G +++VSWT+++ A+++     EAL++FRE      D  +P++   A ++ AC
Sbjct: 66  TRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQAC 125

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFND-VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           A+L     G++AH  +   G + +D V+   +++MY KCG++  + +VF+ +S    V +
Sbjct: 126 ATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAW 185

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           T++I G A +G    SL +F  M   G KP+ V+ + VL  CSH+GLV++G      + +
Sbjct: 186 TTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK 245

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           ++G+ P  KHY C++D+LGR+G L+ A  + + +        + W   L+A ++H   + 
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATA--MNWAIFLAACKVHSDTER 303

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
              A+ +++E  + V  AYV+LSN YA AGEW+ V  +RS MK  G+ K+PG S +E+  
Sbjct: 304 GKRAAEKVLEL-EPVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNS 362

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F+AG+    R +E+  LL  L R+M+  GYV   T LV ++V +E +E ++  HSE
Sbjct: 363 RVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVP-DTKLVLLNVSEEQKERLLCFHSE 421

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL+S P G ++RI+KNLR+C DCH   K +S I  R+  +RD  RFHHF++G C
Sbjct: 422 KLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHC 481

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 482 SCGDYW 487



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS +L++G  SNT     L+N Y +      A ++F  +   ++VS+T+LM+ Y     
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDL 92

Query: 109 PQIALLLFQKM-LGNL--VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ-YNLV 164
            + AL LF++M L  L    P+   FA +++AC+ L+    G+  H  I+  G+   + V
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGV 152

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           +   +++MYGKC ++  A  VFD M  R+ V+WT+II  +A +    E+L MF     Q 
Sbjct: 153 LGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQ-QD 211

Query: 225 RDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
             +P+   L  V++ C+  G +  G      +    G E  +     ++D+  + G +  
Sbjct: 212 GSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEA 271

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAK 308
           ++ +  R+   +     ++ + A K
Sbjct: 272 AEVMIRRMPFQATAMNWAIFLAACK 296



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLF 85
           +++F   LQ C  L + A     H  I + G+ S+   L   +IN Y +    + A ++F
Sbjct: 115 RSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVF 174

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D M E + V++T++++GY + G  + +LL+F +M  +   P+  +   V+  CS    + 
Sbjct: 175 DGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVE 234

Query: 146 TGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            G      I + FG +        ++D+ G+  D++ A  +   M  +   ++W   + A
Sbjct: 235 QGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAA 294

Query: 204 ---HAQNAQGHEALEMFREFN 221
              H+   +G  A E   E  
Sbjct: 295 CKVHSDTERGKRAAEKVLELE 315


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 310/547 (56%), Gaps = 35/547 (6%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           SVH ++L+ GF +  F  + L++ Y ++   + AR++F EM    VV Y +L+ G +   
Sbjct: 167 SVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCK 226

Query: 108 QPQIALLLFQKMLG--NLVWP-----------------------------NEFTFATVIK 136
             + A  LFQ M+   ++ W                              +++TF +++ 
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILT 286

Query: 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           AC  LA L  GKQIH +I    ++ N+ V S+LVDMY KC  +  A  VF  M CRN++S
Sbjct: 287 ACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256
           WT++IV + QNA   EA+  F E       +P+   L SVI++CA+L  L  G   H + 
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEMQMDG-IKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
           + SG      V++ALV +Y KCGS+  + ++F+ +S    V++T+++ G A++G  + ++
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
           DLF +M++ G+KP+ VTF+GVL ACS +GLV++G  + DSM + +GI+P   HYTC++D+
Sbjct: 466 DLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDL 525

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436
             R+GR  EA +  K +   PD     W TLLS+ RL G ++I   A+  L+E++ Q   
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDA--FGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 437 AYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE 496
           +YV L + +A  G+W  V  LR  M+   + KEPGCSW++ +++ + F A +      S 
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSR 643

Query: 497 VLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI 556
           +   L  L  KM E GY    +  V  DV D  +  ++  HSE+LA+AFGLI +P+ + I
Sbjct: 644 IYEKLEWLNSKMAEEGYKPDVSS-VLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPI 702

Query: 557 RIMKNLR 563
           RI+KNLR
Sbjct: 703 RIVKNLR 709



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 196/411 (47%), Gaps = 76/411 (18%)

Query: 48  SVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV------------ 93
           +VH  ILK+ FL    TF LNHL+  Y +  +   AR++FDEM +PN+            
Sbjct: 33  AVHCLILKT-FLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAH 91

Query: 94  -------------------VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFAT 133
                              VSY +L+ G+ + G P  ++ L++ +L    V P   T + 
Sbjct: 92  SRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSA 151

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK------------------ 175
           +I   S L+D   G  +H  +   GF     V S LVDMY K                  
Sbjct: 152 MIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT 211

Query: 176 -------------CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                        C  ++ A+ +F LM  R+ ++WT+++    QN    EAL++FR    
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +     +Q+   S++ AC +L  L  GK  H  + R+  E N  V SALVDMY+KC S+ 
Sbjct: 272 EGVG-IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIR 330

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            ++ VF R++  +++++T+MIVG  +      ++  F+EM   GIKP+D T   V+ +C+
Sbjct: 331 LAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390

Query: 343 HSGLVDEGIQH----LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +   ++EG Q     L S   +Y  + +A     +V + G+ G +++A++L
Sbjct: 391 NLASLEEGAQFHCLALVSGLMRYITVSNA-----LVTLYGKCGSIEDAHRL 436



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           +  C +L SL   A  H   L SG +      N L+  Y +    + A +LFDEM   + 
Sbjct: 386 ISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           VS+T+L+ GY   G+ +  + LF+KML N + P+  TF  V+ ACS
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACS 491


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 317/576 (55%), Gaps = 7/576 (1%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLS-NTFTLNHL--INCYVRLKKTQVARQLFDEMLE 90
           I  ++   H   L  +H+ I+++  +   T +L  L  I     L+    +++ F ++  
Sbjct: 7   ISAIKSVSHKTRLLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSH 66

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
           P V  Y +++        PQ  LLL++ M    +  +  + +  +K+C     L  G Q+
Sbjct: 67  PLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQV 126

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H +I   G Q++ ++ ++++D+Y  C     A +VFD M  R+ V+W  +I    +N + 
Sbjct: 127 HCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRT 186

Query: 211 HEALEMFREFNYQS-RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS 269
            +AL +F      S +  P+      ++ ACA L  L  G+  HG ++  G      + +
Sbjct: 187 RDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCN 246

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329
           +L+ MY++CG ++ + +VF  + N +VV++++MI G A  G GR +++ F EM+  G+ P
Sbjct: 247 SLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLP 306

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           +D TF GVL ACS+SG+VDEG+     M R++G+ P+  HY C+VD+LGR G LD+AY+L
Sbjct: 307 DDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQL 366

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
             S+ V PD    +W TLL A R+HG V +       LIE   Q A  YV L N Y+ AG
Sbjct: 367 IMSMVVKPDS--TMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAG 424

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            WE V  +R  MK   I   PGCS +E++   + F   +    R  E+   L E+  +++
Sbjct: 425 HWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLR 484

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
             GYV   +  +   ++D+ +  ++  HSE+LA+AFG+++ P G  +R+  NLR+C DCH
Sbjct: 485 IAGYVVELSSELH-KMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCH 543

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +  KL S +  RD V+RD NRFHHFR G CSC D+W
Sbjct: 544 NFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 194/559 (34%), Positives = 304/559 (54%), Gaps = 14/559 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++++G  SN      ++N YV+      A+++FD+M     V++T LM GY   G+
Sbjct: 204 IHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGR 263

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL LF  ++   V  + F F+ V+KAC+ L +L  GKQIH  +   G +  + V + 
Sbjct: 264 ARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTP 323

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD Y KC+  + A R F  +   N VSW++II  + Q +Q  EA++ F+    ++    
Sbjct: 324 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVL 383

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     S+  AC+ L     G   H   ++     +    SAL+ MY+KCG ++ + +VF
Sbjct: 384 NSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVF 443

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
             + NP +V +T+ I G A YG    +L LF +M+S G+KPN VTF+ VL ACSH+GLV+
Sbjct: 444 ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVE 503

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G  +LD+M RKY + P   HY C++D+  R+G LDEA +  K++  +PD   + W   L
Sbjct: 504 QGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDA--MSWKCFL 561

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           S    H  +++   A  +L + + +    YV   N Y  AG+WE    +   M    + K
Sbjct: 562 SGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKK 621

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           E  CSW++ + + + F  G+    +  E+   L+E +         G   G +F     E
Sbjct: 622 ELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEKLKEFD---------GFMEGDMFQCSMTE 672

Query: 529 AREEIVGLHSERLALAFGLISIPKG--ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVR 586
            RE+++  HSERLA+AFGLIS+       I++ KNLR C DCH+  K +S +   + V+R
Sbjct: 673 RREQLLD-HSERLAIAFGLISVNGNARAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIR 731

Query: 587 DVNRFHHFRNGSCSCGDFW 605
           D  RFHHF+ G CSC D+W
Sbjct: 732 DSRRFHHFKEGKCSCNDYW 750



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 197/399 (49%), Gaps = 15/399 (3%)

Query: 37  LQECKHLISLASVHSEIL----KSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEP 91
            + C+ L SL+  H  +L    + G  + +  L N ++  Y      + A +LFDEM + 
Sbjct: 88  FEACRELRSLS--HGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDL 145

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           N VS T++++ Y   G    A+ LF +ML +   P    + T++K+      L  G+QIH
Sbjct: 146 NAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIH 205

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
            H+   G   N  + + +V+MY KC  + GA+RVFD M  +  V+WT ++V + Q  +  
Sbjct: 206 AHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRAR 265

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +AL++F +   +  +  +  + + V+ ACASL  L  GK  H  V + G E    V + L
Sbjct: 266 DALKLFVDLITEGVEW-DSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPL 324

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPN 330
           VD Y KC S   + + F  I  P+ V+++++I G  +      ++  F  + S+  +  N
Sbjct: 325 VDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLN 384

Query: 331 DVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
             T+  +  ACS     + G Q H D++ R   +I      + ++ M  + G LD+A+++
Sbjct: 385 SFTYTSIFQACSVLADCNIGGQVHADAIKR--SLIGSQYGESALITMYSKCGCLDDAHEV 442

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
            +S+  +PD   + W   +S    +G    A+    +++
Sbjct: 443 FESMD-NPD--IVAWTAFISGHAYYGNASEALRLFEKMV 478



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 164/336 (48%), Gaps = 5/336 (1%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G+   A   FQ+M    V  + +++  + +AC  L  L  G+ +H  +       ++++ 
Sbjct: 60  GKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQ 119

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           + ++ MY +C  ++ A ++FD M   N VS T++I A+A+     +A+ +F     +S D
Sbjct: 120 NCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRM-LESGD 178

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           +P   M  +++ +  +   L  G+  H  V+R+G   N  + + +V+MY KCG +  + +
Sbjct: 179 KPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKR 238

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF++++    V +T ++VG  + G  R +L LF ++I+ G++ +   F  VL AC+    
Sbjct: 239 VFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEE 298

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT 406
           +  G Q + +   K G+  +    T +VD   +    + A +  + I+   D   + W  
Sbjct: 299 LRFGKQ-IHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPND---VSWSA 354

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           ++S      + + AV+    L   N  V N++   S
Sbjct: 355 IISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTS 390


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/564 (35%), Positives = 317/564 (56%), Gaps = 4/564 (0%)

Query: 43  LISLA-SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           LI +A SVH   ++ GF  N F    L++ Y +     VARQLF+ M E NVV++ ++++
Sbjct: 137 LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVS 196

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           GY + G  + A+ LF  M    +  + +T  ++I A   +  L  G  IH  I   G++ 
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYEN 256

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +  + ++L+D+Y   N VD A RVF  M  ++V +WT ++   +       A++ F +  
Sbjct: 257 DKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKML 316

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                + +   L  ++++C+  G L  G+  H + +++    N  V SA++DMYA CG++
Sbjct: 317 GIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNL 376

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + + F  +    VV + +MI G    G G  ++DLF +M   G+ P++ TFV VL+AC
Sbjct: 377 EDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYAC 436

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH+G+V EG+Q    M +   +IP+ +HY CV+D+LGR G+LD AY    ++   PD   
Sbjct: 437 SHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFD- 495

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            ++ TLL A R+HG + +  E S ++ E     A  YV LSN YALAG WE V   R+ +
Sbjct: 496 -VYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASL 554

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +   + K+PG S +EI  + Y F AG     +  ++  +L+ L  K+K+ GYV   T ++
Sbjct: 555 RSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYV-PNTNVL 613

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             DV D+ +++I+  HSE++A+AFGL+       IRI KNLR C DCH   K +S +  R
Sbjct: 614 LQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGR 673

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
             V++D NRFH F++G CSC D+W
Sbjct: 674 VLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 205/394 (52%), Gaps = 10/394 (2%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L++ K L  L  +H++I+ SG   NTF  N L+N YV       A+Q+F      NVVS+
Sbjct: 31  LRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSW 90

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           T L++G         A+ +F++M+     PN  T ++V+ A + L  +   K +H     
Sbjct: 91  TILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVR 150

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF+ N+ V ++LVDMY K   +  AR++F+ M  RNVV+W +I+  ++ +    EA+++
Sbjct: 151 GGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDL 210

Query: 217 FREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274
              FN   R     + + + S+I A  S+G L  G   HG ++R+G E +  + +AL+D+
Sbjct: 211 ---FNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDI 267

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVT 333
           Y     V+ + +VF+ +S   V  +T M+ G +       ++  FN+M+  + +K + + 
Sbjct: 268 YVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIA 327

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
            +G+L +CSHSG + +G + + ++  K     +    + V+DM    G L++A +    +
Sbjct: 328 LMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM 386

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
               +   + W  +++ + ++G    A++   Q+
Sbjct: 387 G---EKDVVCWNAMIAGNGMNGYGTDAIDLFLQM 417



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 5/288 (1%)

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L DL   +QIH  I T G  +N  + +SL++ Y  C  +  A+++F     +NVVSWT +
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTIL 93

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I   A+N    EA+++FRE       +PN   ++SV+ A A+LG +   K  H   VR G
Sbjct: 94  ISGLAKNDCFVEAIDVFREM-IMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG 152

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E N  V +ALVDMY+K G +  + ++F  +S  +VVT+ +++ G + +G    ++DLFN
Sbjct: 153 FEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFN 212

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M  +G+  +  T + ++ A    G +  G   +     + G   D    T ++D+    
Sbjct: 213 LMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDIYVSH 271

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
             +D+A+++   + V       L  T  S+ R     D A++  N+++
Sbjct: 272 NCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGR---HWDRAIKHFNKML 316


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/567 (35%), Positives = 314/567 (55%), Gaps = 16/567 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYTSLMAGYINM 106
           +HS I  SGF S     N ++  Y R    + AR++FD M E   +VVS+  +++ Y++ 
Sbjct: 269 IHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHN 328

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
            + + A+ L+Q+M    +  ++ T+ +++ ACS   D+  G+ +H  I     + N++V 
Sbjct: 329 DRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG 385

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF------ 220
           ++LV MY KC     AR VFD M  R+++SWT+II A+ +     EA  +F++       
Sbjct: 386 NALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKN 445

Query: 221 NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
               R +P+     +++NACA +  L  GK+        G   +  V +A+V++Y KCG 
Sbjct: 446 GSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGE 505

Query: 281 VNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
           +    ++F+ + S P V  + +MI   A++G    +L LF  M   G++P+  +FV +L 
Sbjct: 506 IEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILL 565

Query: 340 ACSHSGLVDEGIQHLDSMYRKY-GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
           ACSH+GL D+G  +  SM  +Y  +    +H+ CV D+LGR GRL EA +  + + V PD
Sbjct: 566 ACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPD 625

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458
              + W +LL+A R H  +  A E +N+L+    + A  YV LSN YA   +W  V  +R
Sbjct: 626 A--VAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVR 683

Query: 459 SEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKT 518
             M   G+ KE G S +EI    + F  G+    R  E+   L +L  +MKE GYV   T
Sbjct: 684 KFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP-DT 742

Query: 519 GLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDI 578
            +V   V+++ +E ++  HSERLA+A GLIS P G  +R+ KNLR+C DCH   KLIS I
Sbjct: 743 KMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKI 802

Query: 579 VERDFVVRDVNRFHHFRNGSCSCGDFW 605
             R  VVRD  RFH F++G CSC D+W
Sbjct: 803 AGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 219/459 (47%), Gaps = 29/459 (6%)

Query: 4   SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTF 63
           SL R+ I + A   L +Q  R+   T A  +Q+    + L     +HS  +K   L    
Sbjct: 21  SLDRSDIAS-AVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNL 79

Query: 64  TL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
            L NH+++ Y        A+  FD + + N+ S+T L+A +   GQ +  L   ++M  +
Sbjct: 80  ILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQD 139

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
            V P+  TF T + +C     L  G +IH  +     + +  V ++L++MY KC  +  A
Sbjct: 140 GVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHA 199

Query: 183 RRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
           +RVF  M   RNV+SW+ +  AHA +    EAL  FR F      +  +  + ++++AC+
Sbjct: 200 KRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFR-FMLLLGIKATKSAMVTILSACS 258

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP--SVVTY 299
           S   +  G++ H  +  SG E   +VA+A++ MY +CG+V  + KVF+ +      VV++
Sbjct: 259 SPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSW 318

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG----IQHLD 355
             M+        G+ ++ L+  M    ++ + VT+V +L ACS +  V  G     Q ++
Sbjct: 319 NIMLSAYVHNDRGKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVN 375

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
               K  I+ +A     +V M  + G   EA  +   ++       + W T++SA     
Sbjct: 376 DELEKNVIVGNA-----LVSMYAKCGSHTEARAVFDKME---QRSIISWTTIISAYVRRR 427

Query: 416 RVDIAVEASNQLIE-----SNQQV---ANAYVTLSNTYA 446
            V  A     Q++E     S+Q+V   A A+VT+ N  A
Sbjct: 428 LVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACA 466


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 297/520 (57%), Gaps = 8/520 (1%)

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M+ P  V+Y + ++     G  Q AL L  +M       +E+T    + + ++L   +  
Sbjct: 1   MVVPPGVAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALL--RLPA 58

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
             +H+ +   G   +L V ++LVD Y K +    AR VFD M  R+VVSWTS++   A++
Sbjct: 59  DALHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARS 118

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
                AL+++R+        P++  +A+ +++CA    L  G+  H   VR   +    V
Sbjct: 119 RSHDSALQVYRDMVAAGVG-PDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSV 177

Query: 268 ASALVDMYAKCGSVNYSDKVFN--RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            ++LV MYAK GS+  + KVF+  R+     +T+T++IVG A+ G GR SL+++ +M+  
Sbjct: 178 GNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRS 237

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           G +P+ VTF+G+L ACSH+GLVD G  H  SM  ++GI P A HY C+VD+LGR GRLDE
Sbjct: 238 GCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDE 297

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           A  L        D    +W  LL+A R H   ++A  A+  +   +   A  YV LSN Y
Sbjct: 298 AMDLLNRSTTRLDA--TVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLY 355

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           + AG W +V  +R+ MK  GI KEPGCSWV     T+ FY  +    R +EV   + E+ 
Sbjct: 356 SRAGRWGDVARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMT 415

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
            +++ +GYV   T     D   E RE+ +  HSERLA+AFGL+++P G  IR+ KNLR+C
Sbjct: 416 ERIRGQGYV-ADTAWALQDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVC 474

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH   K+++    R+ V+RD N FHH ++G+CSCGD+W
Sbjct: 475 GDCHAAIKMVAQAYGREIVLRDSNCFHHMKDGACSCGDYW 514



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 16/252 (6%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++HS +L++G  ++    N L++ Y +L +   AR +FDEM   +VVS+TSL+ G     
Sbjct: 60  ALHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSR 119

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               AL +++ M+   V P+EF  A  + +C+    L  G+ +H           L V +
Sbjct: 120 SHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGN 179

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCR--NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           SLV MY K   +  A++VFD       + ++WT++IV +AQN +G E+LE++ +   +S 
Sbjct: 180 SLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADM-VRSG 238

Query: 226 DRPNQHMLASVINACASLGRLVSGK-------VAHGVVVRSGCEFNDVVASALVDMYAKC 278
            RP+      ++ AC+  G + +G+         HG+    G +      + +VD+  + 
Sbjct: 239 CRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIA--PGADHY----ACMVDLLGRA 292

Query: 279 GSVNYSDKVFNR 290
           G ++ +  + NR
Sbjct: 293 GRLDEAMDLLNR 304


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 195/556 (35%), Positives = 328/556 (58%), Gaps = 4/556 (0%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H   +KSG   + +  N +++ Y +    + A ++F+ +   ++ ++ S++ G++++G+ 
Sbjct: 131 HGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEF 190

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             ++ + + M+G +   +  ++  V+  C+   +L+ G Q+H        + N+ V S+L
Sbjct: 191 DGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSAL 250

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           VDMYGKC+    A   F+++  +NVVSWT+++ A+ QN +  +AL++F +   +   RPN
Sbjct: 251 VDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGV-RPN 309

Query: 230 QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
           +   A  +N+CA L  L +G       +++G      V +AL++MY+K GS++ + +VF 
Sbjct: 310 EFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFL 369

Query: 290 RISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349
            +    VV++ S+I+G A +GL R ++ +F++M+   I P+ VTFVGVL AC+  GLVDE
Sbjct: 370 SMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDE 429

Query: 350 GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLS 409
           G+ +L+ M ++ GI P  +HYTC+V +L R GRLDEA +   S  +  D   + W +LLS
Sbjct: 430 GLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTD--VVAWKSLLS 487

Query: 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE 469
           + +++    +    + Q+++        YV LSN YA A  W+ V  +R  M+  G+ KE
Sbjct: 488 SCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKE 547

Query: 470 PGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEA 529
           PG SW+++  + + F + +   +  +++   L+EL  ++K  GYV     +V  DVE E 
Sbjct: 548 PGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKVIGYV-PNCAVVLHDVEAEQ 606

Query: 530 REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVN 589
           +EE +  HSE++ALAFGLI  P+G TIRIMKNLR+C DCH   KLIS +  R  VVRD  
Sbjct: 607 KEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTV 666

Query: 590 RFHHFRNGSCSCGDFW 605
           RFH   +G CSC D+W
Sbjct: 667 RFHCIDDGVCSCDDYW 682



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 201/428 (46%), Gaps = 17/428 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H++++++    +    NHLI  Y +  +  +ARQ+FD M   N VS   LM+GY + G
Sbjct: 32  AIHAQMIRAAHF-DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAG 90

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +   AL L +    +L   NE+  +T + A + +     G+Q H +    G Q +  VC+
Sbjct: 91  RHSDALALLKAADFSL---NEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCN 147

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           +++ MY +C  V+ A +VF+ +   ++ ++ S+I       +   ++ + R    +    
Sbjct: 148 AVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQW 207

Query: 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            +   +A V+  CAS   L+ G   H   ++   E N  V SALVDMY KC     +   
Sbjct: 208 DHVSYVA-VLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSA 266

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F  +   +VV++T+++    +      +L LF ++   G++PN+ T+   L++C+    +
Sbjct: 267 FEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAAL 326

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
             G   L +   K G          +++M  ++G + +A+++  S+   P    + W ++
Sbjct: 327 KNG-NALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSM---PWRDVVSWNSV 382

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW----ENVHSLRSEMKR 463
           +     HG    A+   + ++ +  ++  +YVT         +     E ++ L   MK 
Sbjct: 383 IIGYAHHGLAREAMCVFHDMLLA--EIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKE 440

Query: 464 TGIHKEPG 471
            GI  +PG
Sbjct: 441 MGI--KPG 446



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 33  FIQQLQEC---KHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           ++  L  C   K L+    VH++ LK     N +  + L++ Y +    + A   F+ + 
Sbjct: 212 YVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLP 271

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           E NVVS+T++M  Y    + + AL LF  +    V PNEFT+A  + +C+ LA L  G  
Sbjct: 272 EKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNA 331

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ 209
           +       G    L VC++L++MY K   +  A RVF  M  R+VVSW S+I+ +A +  
Sbjct: 332 LSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGL 391

Query: 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVA 268
             EA+ +F +    +   P+      V+ ACA LG +  G     ++++  G +      
Sbjct: 392 AREAMCVFHDM-LLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHY 450

Query: 269 SALVDMYAKCGSVNYSDK-VFNRISNPSVVTYTSMIVGA---AKYGLG-RFSLDLFNEMI 323
           + +V +  + G ++ +++ + +      VV + S++        YGLG R +  +     
Sbjct: 451 TCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQ--- 507

Query: 324 SRGIKPNDV-TFV 335
              +KPNDV T+V
Sbjct: 508 ---LKPNDVGTYV 517



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 157/326 (48%), Gaps = 12/326 (3%)

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
            +L TGK IH  +      ++++  + L+  YGKC  +  AR++FD M  RN VS   ++
Sbjct: 25  GELCTGKAIHAQM-IRAAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLM 83

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261
             +A   +  +AL + +  ++      N+++L++ ++A A +     G+  HG  V+SG 
Sbjct: 84  SGYASAGRHSDALALLKAADFS----LNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGL 139

Query: 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           + +  V +A++ MY +C  V  + KVF  +S   +  + SMI G    G    S+ +   
Sbjct: 140 QEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRS 199

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           M+    + + V++V VL  C+ +  +  G Q H  ++ R+  +  +    + +VDM G+ 
Sbjct: 200 MVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRR--LEQNVYVGSALVDMYGKC 257

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL-IESNQQVANAYV 439
              D A     + +V P+   + W  +++A   + R + A++    L IE  +     Y 
Sbjct: 258 ---DCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYA 314

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTG 465
              N+ A     +N ++L +   +TG
Sbjct: 315 VALNSCAGLAALKNGNALSASAMKTG 340


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 308/526 (58%), Gaps = 13/526 (2%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           AR++FDEM + NVV++TS+++GY    +  +A  LF+ M       NE T+  ++K  + 
Sbjct: 190 AREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTR 245

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
              +    ++   +        +  C+ ++  +G   +V  AR VFD M  ++  +W+++
Sbjct: 246 SGRINEAAELFKAMPV----KPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSAL 301

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           I  + +     EAL +F     +   RPN   + S+++ C SL  L  G+  H  +VRS 
Sbjct: 302 IKIYERKGFELEALALFSLMQREGV-RPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH 360

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            + +  V+S L+ MY KCG +    +VF+R S+  +V + S+I G A++G G  +L++F+
Sbjct: 361 FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFH 420

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           EM S G  P+++TF+GVL AC ++G V EG++  +SM  KY +    +HY C+VD+LGR 
Sbjct: 421 EMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRA 480

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G+L+EA  L +++ V+ D   ++WG LLSA R H  +D+A  A+ +L++     A  Y+ 
Sbjct: 481 GKLNEAMNLIENMPVEADA--IVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYIL 538

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSE-VLS 499
           LSN YA    W++V  LR  M+   + K PGCSW+E+ ++ + F  G +      E ++ 
Sbjct: 539 LSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMK 598

Query: 500 LLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIM 559
            L +L   ++E GY    +  V  DV++E +   +  HSE++A+A+GL+ +P G  IR+M
Sbjct: 599 KLEKLGASLREAGYCPDGS-FVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVM 657

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           KNLR+C DCH   KLI+ +  R+ ++RD NRFHHF++G CSC DFW
Sbjct: 658 KNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 128/305 (41%), Gaps = 56/305 (18%)

Query: 55  KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALL 114
           +S F S+       I+ + RL +   AR +FD++    V S+ +++AGY +  +P  A  
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174
           LF KM                                        + N +  + LV  Y 
Sbjct: 69  LFDKMP---------------------------------------ERNTISWNGLVSGYV 89

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           K   +  AR+VFD M  RNVVSWTS++  + Q     EA  +F          P ++   
Sbjct: 90  KNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM-------PEKN--- 139

Query: 235 SVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASA-LVDMYAKCGSVNYSDKVFNRIS 292
            V++    LG L+  G+V     +       DVVAS  ++      G ++ + ++F+ + 
Sbjct: 140 -VVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP 198

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             +VV +TSMI G A       +  LF  M  +    N+VT+  +L   + SG ++E  +
Sbjct: 199 QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRINEAAE 254

Query: 353 HLDSM 357
              +M
Sbjct: 255 LFKAM 259



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 56/276 (20%)

Query: 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           F  +  +    +  + +   +D AR +FD +  + V SW +I+  +  N +  EA ++F 
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           +                                          E N +  + LV  Y K 
Sbjct: 72  KMP----------------------------------------ERNTISWNGLVSGYVKN 91

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G ++ + KVF+++   +VV++TSM+ G  + GL    +D    +  R  + N V++  +L
Sbjct: 92  GMISEARKVFDKMPERNVVSWTSMVRGYVQEGL----IDEAELLFWRMPEKNVVSWTVML 147

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIP--DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396
                 GL+++G   +D   R + +IP  D    T ++  L   GRL EA ++   +   
Sbjct: 148 -----GGLIEDG--RVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEM--- 197

Query: 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           P    + W +++S   ++ +VD+A +    + + N+
Sbjct: 198 PQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNE 233



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 11  FTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLN 66
           F L A +L    +R          I  L  C  L SL     VHS++++S F  + +  +
Sbjct: 310 FELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSS 369

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            LI  Y++       +++FD     ++V + S++AGY   G  + AL +F +M  +   P
Sbjct: 370 VLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAP 429

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           +E TF  V+ AC     +  G +I   +++ +         + +VD+ G+   ++ A  +
Sbjct: 430 DEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNL 489

Query: 186 FDLMGCR-NVVSWTSIIVA 203
            + M    + + W +++ A
Sbjct: 490 IENMPVEADAIVWGALLSA 508


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 320/589 (54%), Gaps = 41/589 (6%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYV-------------RLKKTQ 79
           F    + C+ L  L  +H+    SG  ++ FT NHL+  Y              R+ +  
Sbjct: 113 FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 172

Query: 80  V------------------ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121
           V                  AR+LFDEM E NV ++ +++AG  N+G  + +L  F  M  
Sbjct: 173 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 232

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
             + P+EF   +V + C+ L D++TG+Q+H ++   G   ++ V SSL  MY +C  +  
Sbjct: 233 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 292

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALE---MFREFNYQSRDRPNQHMLASVIN 238
              V  ++   ++VS  +II    QN     ALE   M R     +    +     S I+
Sbjct: 293 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAA----DVVTFVSAIS 348

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
           +C+ L  L  G+  HG V+++G +    V + LV MY++CG +  S++VF          
Sbjct: 349 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 408

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
            ++MI     +G G+ +++LF +M++ G +P+DVTF+ +L+ACSHSGL +EG+   + M 
Sbjct: 409 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 468

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           + YG+ P  KHYTCVVD+LGR+G LDEA  L  S+ + PDG  ++W TLLSA +     D
Sbjct: 469 KTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG--VIWKTLLSACKTQKNFD 526

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A   + ++IE +   + +YV LSN  A +  W +V  +R  M+   + KEPG SWVE++
Sbjct: 527 MAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELK 586

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
              + F  G+    R  E+   L E+  K+++ GY      +V  D+EDE +E  +  HS
Sbjct: 587 GHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGY-SPDMSMVLHDMEDEEKEVSLSHHS 645

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E+LA+AF  +S+P+G+ IR+MKNLR+C DCH   KL+S +  R+ VVRD
Sbjct: 646 EKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 197/557 (35%), Positives = 309/557 (55%), Gaps = 5/557 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V + ++ SGF  + + +N ++  +V+      AR+LFDEM E +V S+ +++ G ++ G 
Sbjct: 140 VFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGN 199

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A  LF  M          TFAT+I+A + L  +  GKQIH+     G   +  V  +
Sbjct: 200 FSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCA 259

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY KC  ++ A  VFD M  +  V W SII ++A +    EAL ++ E    S    
Sbjct: 260 LIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMR-DSGTTV 318

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +   ++ VI  CA L  L   K AH  +VR G   + V  +ALVD Y+K G +  +  VF
Sbjct: 319 DHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVF 378

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           NR+ + +V+++ ++I G   +G G+ ++++F +M+  G+ P  VTF+ VL ACS+SGL  
Sbjct: 379 NRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQ 438

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
            G +   SM R + + P A HY C++++LGR   LDEAY L ++    P     +W  LL
Sbjct: 439 RGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTAN--MWAALL 496

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H  +++   A+ +L     +    Y+ L N Y  +G+ +    +   +K+ G+  
Sbjct: 497 TACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRM 556

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
            P CSWVE++ Q YAF  G+    +  E+   +  L  ++ + GY      L+  DV DE
Sbjct: 557 LPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLL-PDV-DE 614

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
             + I+  HSE+LA+AFGLI+ P    ++I +  R+C DCH   KLI+ +  R+ VVRD 
Sbjct: 615 EEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDA 674

Query: 589 NRFHHFRNGSCSCGDFW 605
           +RFHHFRNGSCSCGD+W
Sbjct: 675 SRFHHFRNGSCSCGDYW 691



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 166/344 (48%), Gaps = 22/344 (6%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  ++ AC  L  +   K++  ++   GF+ +L V + ++ M+ KC  +  AR++FD M
Sbjct: 120 TYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEM 179

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMF----REFNYQSRDRPNQHMLASVINACASLGR 245
             ++V SW +++          EA  +F    +EFN   R R      A++I A A LG 
Sbjct: 180 PEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFN-DGRSR----TFATMIRASAGLGL 234

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
           +  GK  H   ++ G   +  V+ AL+DMY+KCGS+  +  VF+++   + V + S+I  
Sbjct: 235 VQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIAS 294

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G    +L L+ EM   G   +  T   V+  C+    ++   Q   ++ R +G   
Sbjct: 295 YALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVR-HGFAT 353

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
           D    T +VD   + GR+++A  +   ++       + W  L++    HG+   AVE   
Sbjct: 354 DIVANTALVDFYSKWGRMEDARHVFNRMR---HKNVISWNALIAGYGNHGQGQEAVEMFE 410

Query: 426 QLIESNQQVANAYVTL-----SNTYALAGE--WENVHSLRSEMK 462
           Q+++  + V   +VT      + +Y+   +  WE  +S++ + K
Sbjct: 411 QMLQ--EGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHK 452


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 329/587 (56%), Gaps = 27/587 (4%)

Query: 32  HFIQQLQECKHLISLASVHSEILKSGFLSNTFTL-NHLINCYVRLKKT------------ 78
           + +Q     KH   L  +H+  ++ G L N   +  HLI   V L               
Sbjct: 23  YLLQFCASSKH--KLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNVFTWVL 80

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
             A  +F  +  PNV ++ ++  GY     P  AL  +++M+ + + P+  T+  ++KA 
Sbjct: 81  SYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAI 140

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           S   ++  G+ IH+     GF+  + V +SL+ +Y  C D + A  VF+LM  R++V+  
Sbjct: 141 SKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXI 200

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I   A N +  EAL +FRE + +  + P+   + S+++A A LG L  G+  H  +++
Sbjct: 201 SVINGFALNGRPSEALTLFREMSAEGVE-PDGFTVVSLLSASAELGALELGRRVHVYLLK 259

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            G   N  V ++L+D+YAKC ++   ++        + V++TS+IVG A  G G  +L+L
Sbjct: 260 VGLRENSHVTNSLLDLYAKCDAIWEXER--------NAVSWTSLIVGLAVNGFGEEALEL 311

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F EM  +G+ P+++TFVGVL+ACSH G++DEG  +   M  ++GI+P  +HY C+VD+L 
Sbjct: 312 FREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLS 371

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R G + +AY+  +++ V P+   + W TLL A  +HG + +   A + L++   + +  Y
Sbjct: 372 RAGLVKQAYEYIQNMPVQPNA--VTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDY 429

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LSN Y     W +V  +R  M + G+ K  G S VE+ ++ Y F  GN    +  +V 
Sbjct: 430 VLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVY 489

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           +LL ++   +K  GYV   T  V  D+E+E +E+ +  HSE+ A+AF  ++   G TIR+
Sbjct: 490 ALLEKITELLKLEGYVP-HTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRV 548

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           MKNLR+C DCH   KL++ + +R+ V+RD  RFHHFR GSCSC D+W
Sbjct: 549 MKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 29/294 (9%)

Query: 28  HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           HT    ++ + +  ++    ++HS  +++GF S  F  N L++ Y     T+ A  +F+ 
Sbjct: 131 HTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFEL 190

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M + ++V+  S++ G+   G+P  AL LF++M    V P+ FT  +++ A + L  L  G
Sbjct: 191 MRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELG 250

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +++H ++   G + N  V +SL+D+Y KC+ +            RN VSWTS+IV  A N
Sbjct: 251 RRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXE--------RNAVSWTSLIVGLAVN 302

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-------KVAHGVVVR-- 258
             G EALE+FRE   Q    P++     V+ AC+  G L  G       K   G++ R  
Sbjct: 303 GFGEEALELFREMEGQGL-VPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIE 361

Query: 259 -SGCEFNDVVASALVDMYAKCGSVNYS-DKVFNRISNPSVVTYTSMIVGAAKYG 310
             GC         +VD+ ++ G V  + + + N    P+ VT+ +++     +G
Sbjct: 362 HYGC---------MVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHG 406


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/544 (36%), Positives = 313/544 (57%), Gaps = 21/544 (3%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
            ++I    R  +   AR++FDEM E NV+++T+++ GY    +  +A  LF+ M      
Sbjct: 176 TNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVM------ 229

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGAR 183
           P +    T +   SML       +I    E F       ++ C++++   G+  ++  AR
Sbjct: 230 PEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKAR 285

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
           RVFD M  R+  +W  +I A+ +     EALE+F +   Q   RP+   L S+++ CA+L
Sbjct: 286 RVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGV-RPSFPSLISILSVCATL 344

Query: 244 GRLVSGKVAHGVVVRSGCEFN-DV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
             L  G+  H  +VR  C+F+ DV VAS L+ MY KCG +  +  VF+R  +  ++ + S
Sbjct: 345 ASLQYGRQVHAHLVR--CQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNS 402

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           +I G A +GLG  +L +F+EM   G  PN VT + +L ACS+ G ++EG++  +SM  K+
Sbjct: 403 IISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKF 462

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
            + P  +HY+C VDMLGR G++D+A +L  S+ + PD    +WG LL A + H R+D+A 
Sbjct: 463 CVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDA--TVWGALLGACKTHSRLDLAE 520

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            A+ +L E   + A  Y+ LS+  A   +W +V  +R  M+   + K PGCSW+E+  + 
Sbjct: 521 VAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKV 580

Query: 482 YAFYAGNAL-FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSER 540
           + F  G        + +L +L + +  ++E GY       V  DV++E + + +  HSER
Sbjct: 581 HMFTRGGIRNHPEQAMILMMLEKTDGLLREAGY-SPDCSHVLHDVDEEEKVDSLSRHSER 639

Query: 541 LALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCS 600
           LA+A+GL+ +P+G+ IR+MKNLR+C DCH   KLIS + ER+ ++RD NRFHHF NG CS
Sbjct: 640 LAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECS 699

Query: 601 CGDF 604
           C D+
Sbjct: 700 CRDY 703



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 170/370 (45%), Gaps = 27/370 (7%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           N  + N L++ Y++ +  + AR +F+ M E NVVS+T+++ GY+  G    A LLF +M 
Sbjct: 78  NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMP 137

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND-- 178
                 NE ++        M   LI G +I    + +       V +S   + G C +  
Sbjct: 138 ER----NEVSWTV------MFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGR 187

Query: 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           VD AR +FD M  RNV++WT++I  + QN +   A ++F E   +  +     ML     
Sbjct: 188 VDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLF-EVMPEKTEVSWTSML----- 241

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSVV 297
               LG  +SG++              V+A +A++    + G +  + +VF+++ +    
Sbjct: 242 ----LGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNA 297

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           T+  MI    + G    +L+LF +M  +G++P+  + + +L  C+    +  G Q    +
Sbjct: 298 TWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R      D    + ++ M  + G L +A  +       P    ++W +++S    HG  
Sbjct: 358 VR-CQFDGDVYVASVLMTMYVKCGELVKAKLVFDRF---PSKDIIMWNSIISGYASHGLG 413

Query: 418 DIAVEASNQL 427
           + A++  +++
Sbjct: 414 EEALKVFHEM 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 159/368 (43%), Gaps = 66/368 (17%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H     S  ++N+F ++ L     R+ +   AR+ FD +    + S+ S+++GY   G 
Sbjct: 8   LHRAYSTSTGVNNSFEISRL----SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGL 63

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ A  +F +M                                        + N+V  + 
Sbjct: 64  PREARQMFDEMP---------------------------------------ERNIVSWNG 84

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV  Y K   ++ AR VF++M  RNVVSWT+++  + Q     EA  +F    ++  +R 
Sbjct: 85  LVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLF----WRMPER- 139

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA-LVDMYAKCGSVNYSDKV 287
           N+     +       GR+   +  + ++        DVVAS  ++    + G V+ + ++
Sbjct: 140 NEVSWTVMFGGLIDGGRIDDARKLYDMM-----PGKDVVASTNMIGGLCREGRVDEAREI 194

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           F+ +   +V+T+T+MI G   YG  +  +D+  ++     +  +V++  +L   + SG +
Sbjct: 195 FDEMRERNVITWTTMITG---YGQNK-RVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRI 250

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           ++  +  + M  K  I  +A     ++  LG  G + +A ++   ++ D D     W  +
Sbjct: 251 EDAEEFFEVMPMKPVIACNA-----MIVALGEVGEIVKARRVFDQME-DRDNA--TWRGM 302

Query: 408 LSASRLHG 415
           + A    G
Sbjct: 303 IKAYERKG 310



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 12/286 (4%)

Query: 11  FTLAASSLTRQNKRSSCHTK-AHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTLN 66
           F L A  L  Q +R          I  L  C  L SL     VH+ +++  F  + +  +
Sbjct: 311 FELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVAS 370

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L+  YV+  +   A+ +FD     +++ + S+++GY + G  + AL +F +M  +   P
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMP 430

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIET-FGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           N+ T   ++ ACS    L  G +I   +E+ F     +   S  VDM G+   VD A  +
Sbjct: 431 NKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMEL 490

Query: 186 FDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS-- 242
            + M  + +   W +++ A   +++   A    ++      +    ++L S INA  S  
Sbjct: 491 INSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKW 550

Query: 243 --LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             +  +        V    GC + +V     V M+ + G  N+ ++
Sbjct: 551 GDVAEMRKNMRTKNVSKFPGCSWIEV--GKKVHMFTRGGIRNHPEQ 594



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 33/254 (12%)

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           +   ++ AR+ FD +  + + SW SI+  +  N    EA +MF E        P ++++ 
Sbjct: 29  RIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEM-------PERNIV- 80

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEF------NDVVASALVDMYAKCGSVNYSDKVF 288
                  S   LVSG + + ++  +   F      N V  +A+V  Y + G V  ++ +F
Sbjct: 81  -------SWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLF 133

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
            R+   + V++T M  G    G    +  L++ M  + +    V    ++      G VD
Sbjct: 134 WRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDV----VASTNMIGGLCREGRVD 189

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           E  +  D M R+  +I     +T ++   G+  R+D A KL    +V P+   + W ++L
Sbjct: 190 EAREIFDEM-RERNVIT----WTTMITGYGQNKRVDVARKL---FEVMPEKTEVSWTSML 241

Query: 409 SASRLHGRVDIAVE 422
               L GR++ A E
Sbjct: 242 LGYTLSGRIEDAEE 255


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 320/560 (57%), Gaps = 9/560 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++KS    + F  + L++CY+ +  T  A++LFDEM   + +S+ SL++G+  +G 
Sbjct: 73  IHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGD 132

Query: 109 PQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
               L +F  M   + +  NE T  +VI AC+       G  +H      G +  + V +
Sbjct: 133 LGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVN 192

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           + ++MYGK   VD A ++F  +  +N+VSW S++    QN   +EA+  F          
Sbjct: 193 AFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGL-F 251

Query: 228 PNQHMLASVINACA--SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           P++  + S++ AC    LGRLV  +  HGV+   G   N  +A+ L+++Y+K G +N S 
Sbjct: 252 PDEATILSLLQACEKLPLGRLV--EAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSH 309

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF  IS P  V  T+M+ G A +G G+ +++ F   +  G+KP+ VTF  +L ACSHSG
Sbjct: 310 KVFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSG 369

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           LV +G  +   M   Y + P   HY+C+VD+LGR G L++AY+L KS+ ++P+ G  +WG
Sbjct: 370 LVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSG--VWG 427

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465
            LL A R++  +++  EA+  LI  N      Y+ LSN Y+ AG W +   +R+ MK   
Sbjct: 428 ALLGACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKV 487

Query: 466 IHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDV 525
             +  GCS++E  ++ + F   +       ++   L E+ RK+KE G+V  +T  +  DV
Sbjct: 488 FIRNAGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFV-SETESILHDV 546

Query: 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVV 585
           ++E + +++  HSE++ALAFGL+     + + I+KNLR+C DCH+  K +S I +R  ++
Sbjct: 547 DEEVKTDMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIII 606

Query: 586 RDVNRFHHFRNGSCSCGDFW 605
           RD  RFHHF +G CSC D+W
Sbjct: 607 RDSKRFHHFSDGLCSCADYW 626



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 13/245 (5%)

Query: 30  KAHFIQQLQECKHLIS---LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           +A  +  LQ C+ L     + ++H  I   G   N      L+N Y +L +  V+ ++F 
Sbjct: 254 EATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFA 313

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
           E+ +P+ V+ T+++AGY   G  + A+  F+  +   + P+  TF  ++ ACS    ++ 
Sbjct: 314 EISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMD 373

Query: 147 GKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA- 203
           GK     +  F   Q  L   S +VD+ G+C  ++ A R+   M    N   W +++ A 
Sbjct: 374 GKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGAC 433

Query: 204 --HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA--SLGRLVSGKVAHGVVVR- 258
             +     G EA E     N    D  N  ML+++ +A    S    V   +   V +R 
Sbjct: 434 RVYRNINLGKEAAENLIALN--PSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIRN 491

Query: 259 SGCEF 263
           +GC F
Sbjct: 492 AGCSF 496



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           +V H  V++S    +  +   LV  Y   GS   + K+F+ + +   +++ S++ G ++ 
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 310 G-LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAK 368
           G LG      +        + N++T + V+ AC+ +   DEG   L     K G+  + K
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEG-WCLHCCAVKLGMELEVK 189

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427
                ++M G+ G +D A+KL  ++   P+   + W ++L+    +G  + AV   N +
Sbjct: 190 VVNAFINMYGKFGCVDSAFKLFWAL---PEQNMVSWNSMLAVWTQNGIPNEAVNYFNMM 245


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 207/583 (35%), Positives = 326/583 (55%), Gaps = 15/583 (2%)

Query: 33   FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            F   L+ C  L +L     +H   LK GF       N L++ Y +  +   A ++F  M+
Sbjct: 473  FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMV 532

Query: 90   EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV--WPNEFTFATVIKACSMLADLITG 147
              +++S+ +++AGY++ G    AL  F  M    +   P+EFT  +++KACS    +  G
Sbjct: 533  GRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAG 592

Query: 148  KQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
            KQIH  +   GF    +  +  SLVD+Y KC ++  AR+ FD +  + ++SW+S+I+ +A
Sbjct: 593  KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYA 652

Query: 206  QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
            Q     EA+ +F+     S  + +  +L+S+I   A    L  GK    +VV+       
Sbjct: 653  QEGDFVEAMGLFKRLQELS-SQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLET 711

Query: 266  VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
             V+++LVDMY KCG V+ ++K F  +    V+++T MI G  K+GLG+ ++ +FN+M+  
Sbjct: 712  SVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRH 771

Query: 326  GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
             I+P++V ++ VL ACSHSG++ EG +    +    GI P  +HY CVVD+LGR GRL E
Sbjct: 772  NIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKE 831

Query: 386  AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
            A  L  ++ + P+ G  +W TLLS  R+HG +++  E    L+  + +    YV +SN Y
Sbjct: 832  AKHLVDTMPIKPNVG--IWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLY 889

Query: 446  ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
              AG W    + R      G+ KE G SWVEI  + + F +G         +   L+E+E
Sbjct: 890  GQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVE 949

Query: 506  RKMKER-GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLIS---IPKGITIRIMKN 561
            R+++E  GYV G    +  D++DE++EE +  HSE+LA+   L +     KG TIR+ KN
Sbjct: 950  RRLREELGYVYGLKHELH-DIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKN 1008

Query: 562  LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
            LR+C DCH+  K +S I +  +VVRD  RFH F +G CSCGD+
Sbjct: 1009 LRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 213/398 (53%), Gaps = 7/398 (1%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L+ C  L  +   +S    SG   N  T N+LI+ Y + ++  +A ++FD M E NVVS+
Sbjct: 379 LENCYVLEFIIFTNSNFRLSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSW 438

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
           T+LM+G++  G    +L LF +M    ++PNEFTF+T +KAC +L  L  G QIH     
Sbjct: 439 TALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLK 498

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            GF+  + V +SLVDMY KC  ++ A +VF  M  R+++SW ++I  +     G  AL  
Sbjct: 499 IGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALAT 558

Query: 217 FREFN-YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVD 273
           F      + ++RP++  L S++ AC+S G + +GK  HG +VRSG  C  +  +  +LVD
Sbjct: 559 FGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVD 618

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           +Y KCG++  + K F++I   ++++++S+I+G A+ G    ++ LF  +     + +   
Sbjct: 619 LYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFV 678

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
              ++   +   L+ +G Q + ++  K     +      +VDM  + G +DEA K    +
Sbjct: 679 LSSIIGVFADFALLQQGKQ-MQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEM 737

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           Q+      + W  +++    HG    AV   N+++  N
Sbjct: 738 QLK---DVISWTVMITGYGKHGLGKKAVSIFNKMLRHN 772


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/575 (34%), Positives = 332/575 (57%), Gaps = 13/575 (2%)

Query: 34  IQQLQECK---HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90
           + +LQE K    ++ LA      +K GF S+   L  LI+ + +  + ++AR LF E+ +
Sbjct: 41  VAELQELKLGMQILCLA------IKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRK 94

Query: 91  PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150
            +++S  ++++G+   G+ + ++ LF+++L +    +  T   +I   S          I
Sbjct: 95  KDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCI 154

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H      G   +  V ++L  +Y + N++  AR++FD    + + SW ++I    QN   
Sbjct: 155 HGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLT 214

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
             A+ +F+    ++   PN   + S+++ACA +G L  G+  H ++  +  E N  V++A
Sbjct: 215 DAAISLFQTMQ-KNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTA 273

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+DMYAKCGS+  + ++F+ +   + VT+ +MI G   +G G+ +L LF +M+S  +KP 
Sbjct: 274 LIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPT 333

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            +TF+ VL+ACSH+GLV EG     +M   +G  P A+HY C+VD+LGR G+L +A +  
Sbjct: 334 GLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFI 393

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           K++ V+P  GP +WG LL A  +H   ++A  AS +L E + +    YV +SN Y++  +
Sbjct: 394 KAMPVEP--GPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERK 451

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           +    S+R   K+  + K PGC+ +EI    + F +G+    +   + + L +L  KM E
Sbjct: 452 YPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTE 511

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            G+   +T  V  D+E+E +E  + +HSE+LA+AFGLIS   G  IRI+KNLR+C DCH+
Sbjct: 512 AGF-QTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHN 570

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K +S I +R  VVRD NRFHHF++G CSCGD+W
Sbjct: 571 WTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 2/266 (0%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           L    +R S  T    I       H      +H   +K G +S++     L   Y RL +
Sbjct: 123 LLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNE 182

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
              ARQLFDE  E  + S+ ++++G    G    A+ LFQ M  N V PN  T  +++ A
Sbjct: 183 MIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSA 242

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+ +  L  G+ +H+ I++  F+ N+ V ++L+DMY KC  +  AR +FDLM  +N V+W
Sbjct: 243 CAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTW 302

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK-VAHGVV 256
            ++I  +  +  G EAL++F +    S  +P      SV+ AC+  G +  G  + H +V
Sbjct: 303 NAMISGYGLHGHGQEALKLFYDM-LSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMV 361

Query: 257 VRSGCEFNDVVASALVDMYAKCGSVN 282
              G E      + +VD+  + G + 
Sbjct: 362 HDFGFEPLAEHYACMVDILGRAGQLK 387



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 159/334 (47%), Gaps = 6/334 (1%)

Query: 99  LMAGYINMGQPQIALLLFQKM-LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           +++G++     + ++ +F  M LGN    +  T   V+ A + L +L  G QI       
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF 217
           GF  ++ + + L+ ++ KC +V+ AR +F  +  ++++S  ++I     N +  +++ +F
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277
           +E    S +R +   +  +I   +  G        HG  V+ G   +  V++AL  +Y +
Sbjct: 121 KEL-LSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
              + ++ ++F+  +  ++ ++ +MI G  + GL   ++ LF  M    + PN VT   +
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L AC+  G +  G + + S+ +      +    T ++DM  + G +  A +L     + P
Sbjct: 240 LSACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVAREL---FDLMP 295

Query: 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           +   + W  ++S   LHG    A++    ++ S+
Sbjct: 296 EKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSS 329



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 148/363 (40%), Gaps = 60/363 (16%)

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           +I    +N+   +++ +F +    +  R +   + +V+ A A L  L  G     + ++ 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF 319
           G   +  + + L+ +++KCG V  +  +F  I    +++  +MI G    G    S+ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 320 NEMISRGIKPNDVTFVGVLHA-----------CSHSGLVDEGI-------QHLDSMYRKY 361
            E++S G + +  T VG++             C H   V  GI         L ++Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 362 GIIPDAKH------------YTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGT 406
             +  A+             +  ++    + G  D A  L +++Q   V+P+  P+   +
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPN--PVTVTS 238

Query: 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVT--LSNTYALAGEWENVHSLRSEMKRT 464
           +LSA    G + +  E  + LI+SN+  +N YV+  L + YA  G       L   M   
Sbjct: 239 ILSACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP-- 295

Query: 465 GIHKEPGCSWVEIRDQTY-AFYAGNALFERGSEVLSLLRE-LERKMKERGYVGGKTGLVF 522
                      E  + T+ A  +G  L   G E L L  + L   +K        TGL F
Sbjct: 296 -----------EKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVK-------PTGLTF 337

Query: 523 VDV 525
           + V
Sbjct: 338 LSV 340


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 329/590 (55%), Gaps = 8/590 (1%)

Query: 20  RQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSN---TFTLNHLINCYVRLK 76
           R   R +  T    +  L +   L    SVH+  L++    N         L++ Y + K
Sbjct: 194 RGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCK 253

Query: 77  KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVI 135
               A ++F  M   N V++++L+ G++   +   A  LF+ ML   + + +  + A+ +
Sbjct: 254 HLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASAL 313

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           + C+ LADL  G Q+H  +   G   +L   +SL+ MY K   ++ A  +FD +  ++ +
Sbjct: 314 RVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTI 373

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           S+ +++  + QN +  EA  +F++       +P+   + S+I AC+ L  L  G+ +HG 
Sbjct: 374 SYGALLSGYVQNGKAEEAFLVFKKMQ-ACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           V+  G      + ++L+DMYAKCG ++ S +VF+++    +V++ +MI G   +GLG+ +
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
             LF  M ++G +P+DVTF+ ++ ACSHSGLV EG    D+M  KYGI+P  +HY C+VD
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 552

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +L R G LDEAY+  +S+ +  D    +WG LL A R+H  +D+  + S  + +   +  
Sbjct: 553 LLARGGFLDEAYQFIQSMPLKAD--VRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGT 610

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             +V LSN ++ AG ++    +R   K  G  K PGCSW+EI    +AF  G+       
Sbjct: 611 GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSP 670

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           ++   L  +   +K+ GY    T  V  D+E+E +E+ +  HSE+LA+AFG++S+ +  T
Sbjct: 671 DIYHELDNILIDIKKLGY-QADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 729

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I + KNLR+C DCH   K ++ +  R  +VRD NRFHHF+NG CSCGDFW
Sbjct: 730 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 179/358 (50%), Gaps = 8/358 (2%)

Query: 80  VARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139
           +ARQ+FD +  P+  +Y +L+  Y   G    A+ L++ ML   V PN++TF  V+KACS
Sbjct: 51  LARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACS 110

Query: 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199
            LADL  G+ IH H    G   +L V ++L+D+Y +C     A  VF  M  R+VV+W +
Sbjct: 111 ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNA 170

Query: 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259
           ++  +A +   H A+    +   +   RPN   L S++   A  G L  G   H   +R+
Sbjct: 171 MLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRA 230

Query: 260 GCEFND---VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL 316
             + N+   ++ +AL+DMYAKC  + Y+ +VF+ ++  + VT++++I G         + 
Sbjct: 231 YLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAF 290

Query: 317 DLFNEMISRGIKPNDVTFVG-VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           +LF +M+  G+     T V   L  C+    +  G Q L ++  K GI  D      ++ 
Sbjct: 291 NLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTAGNSLLS 349

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           M  + G ++EA  L   I +      + +G LLS    +G+ + A     ++   N Q
Sbjct: 350 MYAKAGLINEATMLFDEIAIKDT---ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 192/406 (47%), Gaps = 18/406 (4%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  L  L    ++H+     G  ++ F    LI+ Y+R  +   A  +F +M   +V
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 94  VSYTSLMAGYINMG--QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151
           V++ +++AGY N G     IA LL  +  G L  PN  T  +++   +    L  G  +H
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLR-PNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 152 THIETFGFQYN---LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208
            +        N   +++ ++L+DMY KC  +  A RVF  M  RN V+W+++I       
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA 268
           +  EA  +F++   +     +   +AS +  CASL  L  G   H ++ +SG   +    
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAG 344

Query: 269 SALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328
           ++L+ MYAK G +N +  +F+ I+    ++Y +++ G  + G    +  +F +M +  ++
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 329 PNDVTFVGVLHACSHSGLVDEG-IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           P+  T V ++ ACSH   +  G   H   + R  G+  +      ++DM  + GR+D + 
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIR--GLALETSICNSLIDMYAKCGRIDLSR 462

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           ++   +   P    + W T+++   +HG   +  EA+   +    Q
Sbjct: 463 QVFDKM---PARDIVSWNTMIAGYGIHG---LGKEATTLFLSMKNQ 502



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G +  + +VF+RI  P    Y ++I   +  G    ++DL+  M+   + PN  TF  VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            ACS    +  G + + +     G+  D    T ++D+  R  R   A  +   +   P 
Sbjct: 107 KACSALADLCAG-RTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKM---PM 162

Query: 399 GGPLLWGTLLSASRLHG 415
              + W  +L+    HG
Sbjct: 163 RDVVAWNAMLAGYANHG 179


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 327/538 (60%), Gaps = 10/538 (1%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWP 126
           LI  YV     + A++LFDE+   +VVS+ ++++GY+  G  + AL LF++M+    V P
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRP 220

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +E T  TV+ AC+    +  G+ +H+ I   GF  NL + ++L+D+Y K  +V+ A  +F
Sbjct: 221 DESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF 280

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D +  ++V+SW ++I  +       EAL +F+E   +S + PN   + S++ ACA LG +
Sbjct: 281 DGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAI 339

Query: 247 VSGKVAHGVVVRS--GCEFN-DVVASALVDMYAKCGSVNYSDKVFNR-ISNPSVVTYTSM 302
             G+  H  + +   G   N   + ++L+DMYAKCG ++ + +VF+  +SN S+ T+ +M
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAM 399

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           I G A +G    + D+F+ M   GI+P+D+TFVG+L ACSHSG++D G     SM R Y 
Sbjct: 400 ISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYE 459

Query: 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
           I P  +HY C++D+LG +G   EA ++  ++ ++PDG  ++W +LL A ++HG +++   
Sbjct: 460 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDG--VIWCSLLKACKIHGNLELGES 517

Query: 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKE-PGCSWVEIRDQT 481
            + +LI+     + +YV LSN YA AG W  V  +R+ +   G+ K+ PGCS +EI    
Sbjct: 518 FAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVV 577

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F  G+ L  +  E+  +L E+E  ++E G+V   T  V  ++E+E RE  +  HSE+L
Sbjct: 578 HEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFV-PDTSEVLQEMEEEWREGALRHHSEKL 636

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           A+AFGLIS   G  + IMKNLR+C++CH+  KLIS I +R+ + RD  RF HFR+G C
Sbjct: 637 AIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 205/414 (49%), Gaps = 38/414 (9%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLIN-CYV--RLKKTQVARQLFDEMLEPNVVSYTSLMA 101
           S+  +H++++K+G  +  + L+ L+  C V         A  +FD + EPN++ + ++  
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 102 GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY 161
           G+     P  AL L+  M+   + P+ +TF  ++K+C+       G+QIH H+   GF  
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS------------------------- 196
           ++ V +SL+ MY +   ++ AR+VFD+   R+VVS                         
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 197 ------WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
                 W ++I  + +     EALE+F+E    +  RP++  + +V++ACA    +  G+
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H  +   G   N  + +AL+D+Y+K G V  + ++F+ + N  V+++ ++I G     
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKH 369
           L + +L LF EM+  G  PNDVT + +L AC+H G +D G   H+    +  G++ +   
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 370 Y-TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             T ++DM  + G +D A ++  S   +       W  ++S   +HGR + A +
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLST--WNAMISGFAMHGRANAAFD 414



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 52/351 (14%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS I   GF SN   +N LI+ Y +  + + A +LFD +   +V+S+ +L+ GY +M  
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI--ETFGFQYNL-VV 165
            + ALLLFQ+ML +   PN+ T  +++ AC+ L  +  G+ IH +I  +  G   N+  +
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 166 CSSLVDMYGKCNDVDGARRVFD-LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
            +SL+DMY KC D+D A++VFD  M  R++ +W ++I   A + + + A ++F      S
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIF------S 417

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
           R R N                              G E +D+    L+   +  G ++  
Sbjct: 418 RMRMN------------------------------GIEPDDITFVGLLSACSHSGMLDLG 447

Query: 285 DKVFNRIS-----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
             +F  ++      P +  Y  MI      GL + + ++ N M    ++P+ V +  +L 
Sbjct: 448 RNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLK 504

Query: 340 ACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKL 389
           AC   G ++ G      + +   I P ++  Y  + ++    GR +E  K+
Sbjct: 505 ACKIHGNLELGESFAKKLIK---IEPGNSGSYVLLSNIYAAAGRWNEVAKI 552


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/575 (35%), Positives = 330/575 (57%), Gaps = 14/575 (2%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C   + L S      + +  G+  + F    ++N Y +  K   A ++FD+M   ++
Sbjct: 112 LKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDL 171

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V +T+++ G    GQ + A+ ++++M    V  +      +I+AC+ L     G  IH +
Sbjct: 172 VCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGY 231

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           +       +++V +SLVDMY K   ++ A  VF  M  +NV+SW+++I   AQN     A
Sbjct: 232 MIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNA 291

Query: 214 LEM---FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
           L++    + F Y    +P+   L SV+ AC+ +G L  GK  HG +VR    F+ V ++A
Sbjct: 292 LQLVVDMQSFGY----KPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTA 346

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           ++DMY+KCGS++++  VF++IS    +++ ++I     +G G  +L LF +M    +KP+
Sbjct: 347 VIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPD 406

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
             TF  +L A SHSGLV++G      M  +Y I P  KHY C+VD+L R GR++EA +L 
Sbjct: 407 HATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELI 466

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450
           +S+  +P  G  +W  LLS    HG+  I   A+ +++E N      Y  +SN +A A  
Sbjct: 467 ESMITEP--GIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARR 524

Query: 451 WENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKE 510
           W+ V  +R  MK+TG+ K PG S +E+  + +AF   +    +  E++ +L +L+ +MK 
Sbjct: 525 WDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKA 584

Query: 511 RGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
            GYV  KT  V  ++E+E +E ++  HSERLA+AFGL++   G  + I KNLR+C DCH+
Sbjct: 585 MGYV-PKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHE 643

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K IS IV R+ VVRDV RFHHF++G CSCGD+W
Sbjct: 644 ATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 216/406 (53%), Gaps = 7/406 (1%)

Query: 45  SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYI 104
           ++A +H+ ++ +G   +  +   LI  Y RL   + ARQ+FD+  +  V ++ +++  Y 
Sbjct: 22  TIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYS 81

Query: 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
             G    AL L+ +M    V P+  T+  V+KAC+   DL +G++        G+  ++ 
Sbjct: 82  RRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVF 141

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           V ++++++Y KC  +D A RVFD MG R++V WT++I   AQN Q  EA++++R+  ++ 
Sbjct: 142 VGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQM-HKK 200

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
           R   +  ++  +I AC +LG    G   HG ++R     + +V ++LVDMYAK G +  +
Sbjct: 201 RVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELA 260

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             VF R+   +V++++++I G A+ G    +L L  +M S G KP+ V+ V VL ACS  
Sbjct: 261 SCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQV 320

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G +  G      + R+     D    T V+DM  + G L  A  +   I        + W
Sbjct: 321 GFLKLGKSVHGYIVRRLHF--DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDS---ISW 375

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANA-YVTLSNTYALAG 449
             ++++  +HG  + A+    Q+ E+N +  +A + +L + ++ +G
Sbjct: 376 NAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSG 421


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 195/565 (34%), Positives = 320/565 (56%), Gaps = 12/565 (2%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H   +K G   +      L++ Y +      A QLF      NVV Y +++AG+I   
Sbjct: 234 TLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTE 293

Query: 108 Q-----PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162
                    AL LF +M    + P++FTF+++IK C+ +     GKQIH HI     Q +
Sbjct: 294 DIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSD 353

Query: 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
             + S+L+++Y      +   + F+     ++VSWT++I  +AQN Q   AL +F E   
Sbjct: 354 EFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYEL-L 412

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
            S  +P++ ++ ++++ACA +    SG+  HG  V++G     +V ++ + MYAK G+++
Sbjct: 413 ASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLD 472

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +   F  I NP VV+++ MI   A++G  + +++LF  M S GI PN +TF+GVL ACS
Sbjct: 473 SAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACS 532

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG-- 400
           H GLV+EG+++ +SM + Y +  + KH TC+VD+L R GRL +A    K+  ++   G  
Sbjct: 533 HGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDA----KNFILNSGFGDH 588

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
           P++W TLLS  R++  +      + +LIE + Q +++YV L N Y  AG       +R  
Sbjct: 589 PVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIREL 648

Query: 461 MKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520
           MK  GI KEPG SW+E+ ++ ++F  G+        +   L  +  K ++ GY+  K   
Sbjct: 649 MKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGYIDQKIQN 708

Query: 521 VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVE 580
           V +  ++      V  HSE+LA++FG++S+P    +++MKNLR+C DCH   KLIS + +
Sbjct: 709 VTISTKEVKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEK 768

Query: 581 RDFVVRDVNRFHHFRNGSCSCGDFW 605
           R+ ++RD  RFHHF+ GSCSC D+W
Sbjct: 769 REIILRDSLRFHHFKEGSCSCNDYW 793



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 210/417 (50%), Gaps = 16/417 (3%)

Query: 50  HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109
           H+ ++K+ F    F LN+ +N Y +  +   A++LFD M E +V+SY  L++GY  MG  
Sbjct: 32  HAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFY 91

Query: 110 QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
             A+ LF +     +  ++F++A V+ AC  + D   GK IH      G    + + + L
Sbjct: 92  HKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLL 151

Query: 170 VDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN 229
           +DMY KC  +D AR +F+     + VSW S+I  +A+     E L++  + ++    R N
Sbjct: 152 IDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGL-RLN 210

Query: 230 QHMLASVINAC-ASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
              L S + +C  +L  +VS GK  HG  V+ G + + VV +AL+DMYAK G +  + ++
Sbjct: 211 AFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQL 270

Query: 288 FNRISNPSVVTYTSMIVGAAKY-----GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
           F    N +VV Y +MI G  +           +L LF++M  +GIKP+D TF  ++  C+
Sbjct: 271 FRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICN 330

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H    + G Q + +   K+ I  D    + ++++    G  ++  K   S    P    +
Sbjct: 331 HIEAFEYGKQ-IHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNST---PKLDIV 386

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT--LSNTYALAGE--WENVH 455
            W T+++    +G+ + A+    +L+ S ++     +T  LS    +A E   E VH
Sbjct: 387 SWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVH 443



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 182/380 (47%), Gaps = 12/380 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H   +  G     F  N LI+ Y + ++   AR LF+   E + VS+ SL+ GY  +G 
Sbjct: 132 IHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGA 191

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSM-LADLIT-GKQIHTHIETFGFQYNLVVC 166
            +  L L  KM    +  N FT  + +K+C + L ++++ GK +H +    G   ++VV 
Sbjct: 192 YEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVG 251

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-----GHEALEMFREFN 221
           ++L+DMY K   +  A ++F     +NVV + ++I    Q         +EAL++F +  
Sbjct: 252 TALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQ 311

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
            Q   +P+    +S+I  C  +     GK  H  + +   + ++ + S L+++Y+  GS 
Sbjct: 312 RQGI-KPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGST 370

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
               K FN      +V++T+MI G A+ G    +L LF E+++ G KP++     +L AC
Sbjct: 371 EDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSAC 430

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +       G + +     K GI   A      + M  ++G LD A    + I+ +PD   
Sbjct: 431 ADVAAERSG-EQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIK-NPD--V 486

Query: 402 LLWGTLLSASRLHGRVDIAV 421
           + W  ++ ++  HG    A+
Sbjct: 487 VSWSVMICSNAQHGHAKDAI 506



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 124 VWP-NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           V+P +   +  +++  S     I GK  H H+    F   L + ++ +++Y K  ++  A
Sbjct: 4   VFPLDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNA 63

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           +++FD M  R+V+S+  +I  +      H+A+ +F E       + ++   A V++AC  
Sbjct: 64  QKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACL-KLDKFSYAGVLSACGQ 122

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
           +     GKV HG+ +  G      + + L+DMY KC  ++++  +F        V++ S+
Sbjct: 123 IKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSL 182

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC--SHSGLVDEGIQHLDSMYRK 360
           I G A+ G     L L  +M   G++ N  T    L +C  + + +V  G + L     K
Sbjct: 183 ITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG-KTLHGYTVK 241

Query: 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            G+  D    T ++DM  +TG L +A +L ++    P+   +++  +++ 
Sbjct: 242 QGLDLDIVVGTALLDMYAKTGYLGDAIQLFRT---SPNQNVVMYNAMIAG 288


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 317/553 (57%), Gaps = 4/553 (0%)

Query: 53  ILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           ++ +GF  + +  N ++  +V+      A +LFDEM   N VS+ ++++GY++ G    A
Sbjct: 158 MVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEA 217

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
             LF  M          TFAT+I+A + L  +  G+Q+H+     G   ++ V  +L+DM
Sbjct: 218 FRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDM 277

Query: 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232
           Y KC  ++ A  VFD M  + +V W SII  +A +    EAL+++ E    S  + +   
Sbjct: 278 YSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMR-DSGVKMDHFT 336

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292
            + +I  C+ L  +   K  H  +VR+G   + V  +ALVD Y+K G V+ +  VF+R+S
Sbjct: 337 FSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMS 396

Query: 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352
             +++++ ++I G   +G G  ++D+F +M+  G+ PN VTF+ VL ACS SGL + G +
Sbjct: 397 CRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWE 456

Query: 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412
              SM R + + P A H+ C++++LGR G LDEAY L +     P     +W  LL A R
Sbjct: 457 IFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTAN--MWAALLRACR 514

Query: 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGC 472
           +HG +++   A+ +L     +  + Y+ L N Y  +G+ +    +   +KR G+   P C
Sbjct: 515 VHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPAC 574

Query: 473 SWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREE 532
           SW+E+ +Q +AF +G+    +  +V+  + EL   + + GYV  +   +  DV DE  E+
Sbjct: 575 SWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDV-DENEEK 633

Query: 533 IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFH 592
           I   HSE+LA+A+GL++  +   ++I+++ R+C DCH V KLI+ I +R+ V+RD +RFH
Sbjct: 634 IRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFH 693

Query: 593 HFRNGSCSCGDFW 605
           HFR+GSCSCGD+W
Sbjct: 694 HFRDGSCSCGDYW 706



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 40/348 (11%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS  +K+G   + F    LI+ Y +    + A  +FDEM +  +V + S++AGY   G 
Sbjct: 255 LHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGY 314

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL L+ +M  + V  + FTF+ +I+ CS LA +   KQ+H  +   GF  ++V  ++
Sbjct: 315 SEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTA 374

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD Y K   VD AR VFD M CRN++SW ++I  +  +  G EA++MF +   +    P
Sbjct: 375 LVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGM-MP 433

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N     +V++AC+     +SG    G          ++  S   D   K           
Sbjct: 434 NHVTFLAVLSACS-----ISGLFERGW---------EIFQSMTRDHKVK----------- 468

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
                P  + +  MI    + GL    LD    +I +   +P    +  +L AC   G +
Sbjct: 469 -----PRAMHFACMIELLGREGL----LDEAYALIRKAPFQPTANMWAALLRACRVHGNL 519

Query: 348 DEGIQHLDSMYRKYGIIPDA-KHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           + G    + +   YG+ P+   +Y  ++++   +G+L EA  + ++++
Sbjct: 520 ELGKFAAEKL---YGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLK 564



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 11/302 (3%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           T+  +I AC  L  +   K++  ++   GF+ +  + + ++ M+ KC  +  A R+FD M
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNYQSRDRPNQHMLASVINACASLGRL 246
             RN VSW +II  +  +    EA  +F   RE  Y    R      A++I A A L  +
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRT----FATMIRASAGLEII 249

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             G+  H   +++G   +  V+ AL+DMY+KCGS+  +  VF+ + + ++V + S+I G 
Sbjct: 250 FPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGY 309

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A +G    +LDL++EM   G+K +  TF  ++  CS    V    Q   S+ R  G   D
Sbjct: 310 ALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRN-GFGLD 368

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
               T +VD   + G++D+A  +   +        + W  L++    HG  + A++   +
Sbjct: 369 VVANTALVDFYSKWGKVDDARHVFDRMSCR---NIISWNALIAGYGNHGHGEEAIDMFEK 425

Query: 427 LI 428
           ++
Sbjct: 426 ML 427



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           +ALEMF  F  +           ++INAC  L  +   K     +V +G E +  + + +
Sbjct: 114 DALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRV 173

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           + M+ KCG +  + ++F+ +   + V++ ++I G    G    +  LF  M         
Sbjct: 174 LLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGP 233

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
            TF  ++ A +   ++  G Q L S   K G+  D      ++DM  + G L++A+ +  
Sbjct: 234 RTFATMIRASAGLEIIFPGRQ-LHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFD 292

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
            +   PD   + W ++++   LHG  + A++  +++ +S
Sbjct: 293 EM---PDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDS 328


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 180/525 (34%), Positives = 316/525 (60%), Gaps = 3/525 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F  + +P    + +++ GY+N+   + AL  + +M+     P+ FT+  ++KAC+ 
Sbjct: 85  AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L  +  GKQIH  +   G + ++ V +SL++MYG+C +++ +  VF+ +  +   SW+S+
Sbjct: 145 LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSM 204

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           + A A      E L +FR    ++  +  +  + S + ACA+ G L  G   HG ++R+ 
Sbjct: 205 VSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNI 264

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            E N +V ++LVDMY KCG ++ +  +F ++   + +TY++MI G A +G G  +L +F+
Sbjct: 265 SELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFS 324

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           +MI  G++P+ V +V VL+ACSHSGLV EG +    M ++  + P A+HY C+VD+LGR 
Sbjct: 325 KMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRA 384

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G L+EA +  +SI ++ +   ++W T LS  R+   +++   A+ +L++ +      Y+ 
Sbjct: 385 GLLEEALETIQSIPIEKN--DVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLL 442

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           +SN Y+    W++V   R+E+   G+ + PG S VE++ +T+ F + +    +  E+  +
Sbjct: 443 ISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKM 502

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L ++E ++K  GY    T  + ++V++E ++E +  HS+++A+AFGL+  P G  I+I +
Sbjct: 503 LHQMEWQLKFEGYSPDLTQ-ILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIAR 561

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLRMC DCH   K IS I ER+ VVRD NRFH F+ G+CSC D+W
Sbjct: 562 NLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/562 (37%), Positives = 318/562 (56%), Gaps = 47/562 (8%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP----NVVSYTSLMAGY 103
           ++H  ILK G   ++F    L++ YV++++   A ++FDE  E     +V+ +  L+ GY
Sbjct: 161 ALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGY 220

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
             MG    A  LF  M      P + T +                               
Sbjct: 221 CRMGDLVKATELFDSM------PKKDTGS------------------------------- 243

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
              +SL++ + K  D+  A+ +F  M  +NVVSWT+++   +QN    +ALE F     +
Sbjct: 244 --WNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCM-LE 300

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
              RPN + + S ++ACA +G L +G   H  +  +G + N V+ +ALVDMYAKCG++ +
Sbjct: 301 EGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEH 360

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           ++KVF+      ++ ++ MI G A +G  R +L  F  M   G KP+ V F+ VL+ACSH
Sbjct: 361 AEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSH 420

Query: 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL 403
           SG V+EG++  D+M R Y I P  KHYT VVDMLGR GRLDEA K  +++ + PD   ++
Sbjct: 421 SGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDF--VV 478

Query: 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463
           WG L  A R H  V++A  AS +L++   +   +YV LSN YA  G W++   +R  M+ 
Sbjct: 479 WGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRD 538

Query: 464 TGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV 523
            G HK+PG S++E+  + + F AG+    R  E+ S L E+    +E+GY   +   V  
Sbjct: 539 HGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYT-KEIECVLH 597

Query: 524 DVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDF 583
           ++E+E +EE +G HSE+LALAFG++S   G T+RI+KNLR+C DCH   K  S + +R+ 
Sbjct: 598 NIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREI 657

Query: 584 VVRDVNRFHHFRNGSCSCGDFW 605
           ++RD+ RFHHF +G CSCGD+W
Sbjct: 658 ILRDMKRFHHFNDGVCSCGDYW 679


>gi|302788234|ref|XP_002975886.1| hypothetical protein SELMODRAFT_104103 [Selaginella moellendorffii]
 gi|300156162|gb|EFJ22791.1| hypothetical protein SELMODRAFT_104103 [Selaginella moellendorffii]
          Length = 679

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/582 (34%), Positives = 344/582 (59%), Gaps = 15/582 (2%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
            I  +  C  L SL    ++ + I   GF  +    N L+N Y +      AR+ F +M 
Sbjct: 104 LINPVSACSSLGSLDHGRALEARITSMGFHLHPVVWNSLLNMYCKAGSIDNARKFFQDMA 163

Query: 90  -EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI--KACSMLADLIT 146
            + +VVS+T++++G+   G   +AL  F+KM+   V PNE TF +++  +ACS L  L  
Sbjct: 164 GDQSVVSWTAMISGFALHGCEDLALDFFRKMVAEGVRPNEVTFVSILALEACSNLNLLAA 223

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHA 205
           GK++H  I   G   ++V  +SL++MYGKC  +D ARRVF+  G CRN+++W+++I A++
Sbjct: 224 GKKLHELILDAGLDSSIVR-NSLLNMYGKCGGLDEARRVFERCGDCRNLITWSTMIAAYS 282

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG-RLVSGKVAHGVVVRSGCEFN 264
            N  G +AL ++++ + +  + P+++   S+++AC+  G  L  G+  H  +   G E  
Sbjct: 283 LNGDGRQALSLYKKMDLEGLE-PDEYTFTSLLDACSIAGDTLTEGRALHRRLEAKGLEKK 341

Query: 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324
            V+A+AL++MY + G +  + +VF ++++ ++V +T++I   A++G    ++DL   M  
Sbjct: 342 MVLATALINMYGRYGQLEDALRVFEKMNHWNLVAWTALIAAFAQHG-NVHAIDLSWRMHL 400

Query: 325 RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
            G++ +++ F+ VLHACSH+ +++ G+     M   +G+   A HY+C+VD+L R GR+ 
Sbjct: 401 EGVQADNIVFLSVLHACSHAVVLEAGLSCFQEMVADFGVRGGAAHYSCMVDLLARCGRVA 460

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444
           EA +L  S+  +P    +   TLL+A R+ G        +          A  YV +S+ 
Sbjct: 461 EAEELLHSMPFEP--AHMEMKTLLAACRVSGDTPRGARVARLASGLIPHDAAPYVLMSHA 518

Query: 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGN-ALFERGSEVLSLLRE 503
           YA   +W+ V  ++  M + G+ K  G S VE++++ + F+AGN +     +E+   LR 
Sbjct: 519 YAAVEKWDEVAEVQERMAKLGVKKPRGWSCVEVKNRVHQFFAGNFSWHSEAAEIEVELRR 578

Query: 504 LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLR 563
           L+  +KE GY+   TG +   +E++ +E+++ LHSER+A+AFGL+ +P G+ I ++KNLR
Sbjct: 579 LQAVVKEGGYIP-DTGQIGHRLEEDGKEDLLALHSERVAIAFGLLRVPAGLPIHVVKNLR 637

Query: 564 MCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +C DCH V K+IS  V R  VVRD  RFH F NG+CSCGD+W
Sbjct: 638 VCSDCHAVAKIISRSVGRRIVVRDAYRFHRFENGTCSCGDYW 679



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 213/393 (54%), Gaps = 14/393 (3%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   LQ+C    SL     +H+EI+ +G   + F  NHLI  Y +    + AR +F+++ 
Sbjct: 3   FASLLQQCGRSRSLPEGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEEARAVFEKIE 62

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
            PN+ S++ ++   ++ G  + AL L+  M    V  +       + ACS L  L  G+ 
Sbjct: 63  SPNIFSWSIIIGACVDNGLARRALELYHWMDHEGVRLDMVVLINPVSACSSLGSLDHGRA 122

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF-DLMGCRNVVSWTSIIVAHAQNA 208
           +   I + GF  + VV +SL++MY K   +D AR+ F D+ G ++VVSWT++I   A + 
Sbjct: 123 LEARITSMGFHLHPVVWNSLLNMYCKAGSIDNARKFFQDMAGDQSVVSWTAMISGFALHG 182

Query: 209 QGHEALEMFREFNYQSRDRPNQHMLASV--INACASLGRLVSGKVAHGVVVRSGCEFNDV 266
               AL+ FR+   +   RPN+    S+  + AC++L  L +GK  H +++ +G + + +
Sbjct: 183 CEDLALDFFRKMVAEGV-RPNEVTFVSILALEACSNLNLLAAGKKLHELILDAGLD-SSI 240

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
           V ++L++MY KCG ++ + +VF R  +  +++T+++MI   +  G GR +L L+ +M   
Sbjct: 241 VRNSLLNMYGKCGGLDEARRVFERCGDCRNLITWSTMIAAYSLNGDGRQALSLYKKMDLE 300

Query: 326 GIKPNDVTFVGVLHACSHSG-LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384
           G++P++ TF  +L ACS +G  + EG + L       G+       T +++M GR G+L+
Sbjct: 301 GLEPDEYTFTSLLDACSIAGDTLTEG-RALHRRLEAKGLEKKMVLATALINMYGRYGQLE 359

Query: 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
           +A ++ + +        + W  L++A   HG V
Sbjct: 360 DALRVFEKMN---HWNLVAWTALIAAFAQHGNV 389



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 178/330 (53%), Gaps = 19/330 (5%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
            FA++++ C     L  G++IH  I   G   +L + + L+ MYGKC  ++ AR VF+ +
Sbjct: 2   AFASLLQQCGRSRSLPEGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEEARAVFEKI 61

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
              N+ SW+ II A   N     ALE++   +++   R +  +L + ++AC+SLG L  G
Sbjct: 62  ESPNIFSWSIIIGACVDNGLARRALELYHWMDHEGV-RLDMVVLINPVSACSSLGSLDHG 120

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAK 308
           +     +   G   + VV ++L++MY K GS++ + K F  ++ + SVV++T+MI G A 
Sbjct: 121 RALEARITSMGFHLHPVVWNSLLNMYCKAGSIDNARKFFQDMAGDQSVVSWTAMISGFAL 180

Query: 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGV--LHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           +G    +LD F +M++ G++PN+VTFV +  L ACS+  L+  G        + + +I D
Sbjct: 181 HGCEDLALDFFRKMVAEGVRPNEVTFVSILALEACSNLNLLAAG-------KKLHELILD 233

Query: 367 AKHYTCVV-----DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           A   + +V     +M G+ G LDEA ++ +  +       + W T+++A  L+G    A+
Sbjct: 234 AGLDSSIVRNSLLNMYGKCGGLDEARRVFE--RCGDCRNLITWSTMIAAYSLNGDGRQAL 291

Query: 422 EASNQL-IESNQQVANAYVTLSNTYALAGE 450
               ++ +E  +     + +L +  ++AG+
Sbjct: 292 SLYKKMDLEGLEPDEYTFTSLLDACSIAGD 321


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 306/534 (57%), Gaps = 59/534 (11%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+  +   V+ AC+ +   + GK +H      G   +L V ++LVDMY KC  VD A +V
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 186 FDLMGCR-----------------------------------NVVSWTSIIVAHAQNAQG 210
           FD +  +                                   NVVSW+++I A AQ   G
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 211 HEALEMFREFNY-QSRD---------------RPNQHMLASVINACASLGRLVSGKVAHG 254
            E L++FRE  + ++ D               +PN   ++  + ACA L  L  G+  H 
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 255 VVVRSGCEFNDV---VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            ++R+   F+     VA+ L+DMYAK G ++ +  VF+ +   + V++TS++ G   +G 
Sbjct: 191 YILRN--HFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
           G+ +L++F+EM   G++P+ VT + VL+ACSHSG++D+GI+  +SM +++G+IP  +HY 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           C+VD+LGR GRL+EA +L + +Q++P    ++W  LLS  R+H  V++   A+ QL+E N
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPS--SIVWVALLSGCRIHANVELGEHAAKQLLELN 366

Query: 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALF 491
            +   +Y  LSN YA A  W++V  +RS MK +GI K PGCSWV+ +  T  FY  +   
Sbjct: 367 SENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTH 426

Query: 492 ERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIP 551
            +  ++  +LR L +++K  GYV  +T     DV+DE + +++  HSE+LALA+G++   
Sbjct: 427 PQSKQIYEILRSLTQRIKVLGYV-PETSFALHDVDDEEKVDLLFEHSEKLALAYGILISA 485

Query: 552 KGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            G  IRI KNLR+C DCH+    IS I++ + ++RD +RFHHF+ GSCSC  +W
Sbjct: 486 PGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 143/316 (45%), Gaps = 62/316 (19%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH   ++SG   + F  N L++ Y +      A ++FD + E +VVS+ +++ GY  +G
Sbjct: 34  AVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIG 93

Query: 108 QPQIALLLFQKM-----------------------LG----------------------- 121
           + + AL LF+KM                       LG                       
Sbjct: 94  RFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFS 153

Query: 122 ------NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-LVVCSSLVDMYG 174
                  LV PN FT +  + AC+ LA L  G+QIH +I    F    L V + L+DMY 
Sbjct: 154 WMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYA 213

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234
           K  D+D AR VFD +  +N VSWTS++  +  + +G EALE+F E       +P+   L 
Sbjct: 214 KSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGL-QPDGVTLL 272

Query: 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA----SALVDMYAKCGSVNYSDKVFNR 290
            V+ AC+  G +  G      + +   EF  +      + +VD+  + G +N + ++   
Sbjct: 273 VVLYACSHSGMIDQGIEFFNSMSK---EFGVIPGQEHYACMVDLLGRAGRLNEAMELIEG 329

Query: 291 IS-NPSVVTYTSMIVG 305
           +   PS + + +++ G
Sbjct: 330 MQMEPSSIVWVALLSG 345



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 31/286 (10%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
           RP+   L +V+ ACAS+G  + GK  HG+ VRSG  F D+ V +ALVDMYAKCG V+ + 
Sbjct: 10  RPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSG-SFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           KVF+RI    VV++ +M+ G ++ G    +L LF +M    I+ N V++  V+ A +  G
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 346 L---------------VDEGIQHLDSMYRKYGII-PDAKHYTCVVDMLGRTGRLDEAYKL 389
           L                ++ ++    M+++ G++ P+    +C +    R   L    ++
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 390 AKSIQVDPDGGPLLW--GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
              I  +      L+    L+      G +D+A    + L + N     ++ +L   Y +
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN---FVSWTSLMTGYGM 245

Query: 448 AGEWENVHSLRSEMKRTGIHKEP--------GCSWVEIRDQTYAFY 485
            G  +    +  EM+R G+  +          CS   + DQ   F+
Sbjct: 246 HGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFF 291



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 16/240 (6%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSN-TFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           L  C  L +L     +H+ IL++ F S   +  N LI+ Y +     VAR +FD + + N
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
            VS+TSLM GY   G+ + AL +F +M    + P+  T   V+ ACS    +  G +   
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292

Query: 153 HI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA---HAQN 207
            + + FG        + +VD+ G+   ++ A  + + M    + + W +++     HA  
Sbjct: 293 SMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANV 352

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACA----SLGRLVSGKVAHGVVVRSGCEF 263
             G  A +   E N ++      + L S I A A     + R+ S     G+  R GC +
Sbjct: 353 ELGEHAAKQLLELNSEN---DGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSW 409


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 206/618 (33%), Positives = 325/618 (52%), Gaps = 49/618 (7%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK---TQVA 81
           SSC     ++     C  +  +   HS +L+ G  +N   ++ +   +  L K      A
Sbjct: 2   SSC-----WVPPPWACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFT-FCSLSKHGDINYA 55

Query: 82  RQLFDEMLEPNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
            +LF  +  P+   Y +L   + ++ Q P ++LL +  ML + V PN FTF ++I+AC +
Sbjct: 56  LKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKL 115

Query: 141 LADLITGKQIHTHIETFGF-------------------------------QYNLVVCSSL 169
             +    KQ+H H+  FGF                                 N+V  +SL
Sbjct: 116 EEE---AKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSL 172

Query: 170 VDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           V  Y +   VD A RVF+LM C+ N VSW ++I    +  +  EA  +FR    + +   
Sbjct: 173 VSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMEL 232

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           ++ + A++++AC  +G L  G   H  V ++G   +  +A+ ++DMY KCG ++ +  VF
Sbjct: 233 DRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVF 292

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLV 347
             +    V ++  MI G A +G G  ++ LF EM     + P+ +TFV VL AC+HSGLV
Sbjct: 293 CGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLV 352

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407
           +EG  +   M   +GI P  +HY C+VD+L R GRL+EA K+   + + PD   L  G L
Sbjct: 353 EEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVL--GAL 410

Query: 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467
           L A R+HG +++  E  N++IE + + +  YV L N YA  G+WE V  +R  M   G+ 
Sbjct: 411 LGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVK 470

Query: 468 KEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVED 527
           KEPG S +E+      F AG         + + + E+   ++  G+V    G V  D+ +
Sbjct: 471 KEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDG-VLHDLVE 529

Query: 528 EAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRD 587
           E RE  +  HSE+LA+A+GL+   +G T+R+ KNLR+C+DCH   K+IS + + D ++RD
Sbjct: 530 EERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRD 589

Query: 588 VNRFHHFRNGSCSCGDFW 605
            +RFHHF NG CSC D+W
Sbjct: 590 RSRFHHFSNGECSCKDYW 607


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/551 (35%), Positives = 317/551 (57%), Gaps = 21/551 (3%)

Query: 57  GF-LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL 115
           GF +S+ F    +++ Y +  K + AR +FD +L+ +VV +T+L+ GY   G    AL +
Sbjct: 131 GFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEV 190

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           F+ M+G+ + PNE+T A+V+ +C  L DL+ GK IH  +  +G +  +   +SL+ MY K
Sbjct: 191 FEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSK 250

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
           CN V+ + +VF+ +   + V+WTS IV   QN +   AL MFRE   +    PN   L+S
Sbjct: 251 CNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREM-MRCSISPNHFTLSS 309

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           +++AC+SL  L +G+  H V V+ G + N  V +AL+ +Y KCG+V  +  VF+ ++   
Sbjct: 310 ILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELD 369

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
           +V+  +MI   A+ G G  +L+LF  +   G++PN VTF+ +L AC+++GLV+EG Q   
Sbjct: 370 IVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFS 429

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            +   + I     HYTC++D+LGR  R +EA  L +  + +PD   + W TLL+A ++HG
Sbjct: 430 LIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGK-NPD--VIQWRTLLNACKIHG 486

Query: 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475
            V++A +   ++++   +    ++ L+N YA AG+W+NV  ++S  +   + K P  SWV
Sbjct: 487 EVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWV 546

Query: 476 EIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVG 535
           +I  + + F AG+    R  E+  +L EL  K+   GY    T  V  D+E+E +   + 
Sbjct: 547 DIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGY-NPDTKFVLQDLEEEKKISALY 605

Query: 536 LHSERLALAFGLI-SIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
            HSE+LA+AF L  +  K   IRI KNLR+C D                + RD  RFHHF
Sbjct: 606 YHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDY--------------IIARDAKRFHHF 651

Query: 595 RNGSCSCGDFW 605
           + G CSC D+W
Sbjct: 652 KGGICSCKDYW 662



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 217/371 (58%), Gaps = 10/371 (2%)

Query: 26  SCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85
           +C+T    I Q    K L +L S+H+ ILKSG L + F  + LI+ Y++      AR+LF
Sbjct: 2   NCYTS--LIAQCTNKKSLTTLKSLHTHILKSGSLFSFFG-HKLIDGYIKCSVITEARKLF 58

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           DEM   ++V++ S+++ +++ G+ + A+ L+  ML   V P+ +TF+ + KA S +    
Sbjct: 59  DEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSR 118

Query: 146 TGKQIHTHIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAH 204
            G++ H      GF+  +  V + +VDMY K   +  AR VFD +  ++VV +T++IV +
Sbjct: 119 EGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGY 178

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN 264
            Q+    EALE+F +    SR +PN++ LASV+ +C +LG LV+GK+ HG+VV+ G E  
Sbjct: 179 NQHGLDGEALEVFEDM-VGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLE-- 235

Query: 265 DVVAS--ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            VVAS  +L+ MY+KC  V  S KVFN ++  S VT+TS IVG  + G    +L +F EM
Sbjct: 236 SVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREM 295

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
           +   I PN  T   +LHACS   +++ G + + ++  K G+  +      ++ + G+ G 
Sbjct: 296 MRCSISPNHFTLSSILHACSSLAMLEAG-EQIHAVTVKLGVDGNKFVDAALIHLYGKCGN 354

Query: 383 LDEAYKLAKSI 393
           +++A  +  S+
Sbjct: 355 VEKARSVFDSL 365



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 143/295 (48%), Gaps = 26/295 (8%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K G  S   +   L+  Y +    + + ++F+ +   + V++TS + G +  G+
Sbjct: 225 IHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGR 284

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            ++AL +F++M+   + PN FT ++++ ACS LA L  G+QIH      G   N  V ++
Sbjct: 285 EEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAA 344

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ +YGKC +V+ AR VFD +   ++VS  ++I A+AQN  GHEALE+F        + P
Sbjct: 345 LIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLE-P 403

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA------------SALVDMYA 276
           N     S++ AC + G           +V  GC+   ++             + ++D+  
Sbjct: 404 NVVTFISILLACNNAG-----------LVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLG 452

Query: 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +      +  +     NP V+ + +++     +G    +     +M+ +   P D
Sbjct: 453 RAKRFEEATMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQA--PRD 505


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 311/532 (58%), Gaps = 11/532 (2%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMG-----QPQIALLLFQKMLGNLVWPNEFTFATVI 135
           A  +F  + +P    Y +LM GY+  G      P  AL LF  M+ + V P+ +TF  V 
Sbjct: 86  AASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVF 145

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRN 193
           KAC+ L  L  G+Q+  H+   GFQ +    +SL+  YGKC + D ARR F+ M    + 
Sbjct: 146 KACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQT 205

Query: 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253
             SW++++ A+ +  +  E +E F     ++  RP++  + S ++ACA LG    G+  H
Sbjct: 206 TASWSALLAAYTRAGRWAECVESFGAM-VRAGWRPDESSMVSALSACAHLGAHDVGRSIH 264

Query: 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
             ++R+    N  ++++LVDMYAKCG +  +  VF+ + + +  TY++M+ G A +G GR
Sbjct: 265 CALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGR 324

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            +L++F+ M+  G +P+   +VGVL+ACS +GL++EG++  D M  ++ + P+A+HY C+
Sbjct: 325 KALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCM 384

Query: 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433
           VD++ R GRLD+A  L  ++   P      W +LL+A R+HG +++A  A  +L      
Sbjct: 385 VDLMARAGRLDDARALIGNMPTGPTD--TAWRSLLNACRIHGNLELAERALQELERLGAT 442

Query: 434 VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFER 493
            A  Y+ LS+ +A A   +   + R+E    G+ + PG S VE+   T+ F + +    R
Sbjct: 443 NAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPR 502

Query: 494 GSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKG 553
             ++  +L ++E +++  GY    + L  +D  +E +  +V  HS++LA+AFGL+S P+G
Sbjct: 503 ADDIYEMLHQMEWQLRFEGYTPDTSELA-LDAGEEEKRRVVAAHSQKLAMAFGLLSTPEG 561

Query: 554 ITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             +R++ NLRM ++CH    LIS+I  R+ VVRD NRFH F+ G+CSCG++W
Sbjct: 562 APVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++  +  L  C HL +     S+H  +L++    NTF    L++ Y +    + A  +FD
Sbjct: 241 ESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFD 300

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            M + N  +Y+++++G    G  + AL +F  M+     P+   +  V+ ACS    L  
Sbjct: 301 AMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEE 360

Query: 147 GKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV-VSWTSIIVA 203
           G +    +        N      +VD+  +   +D AR +   M       +W S++ A
Sbjct: 361 GLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNA 419


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 332/564 (58%), Gaps = 10/564 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NVVSYTSLMAGYINMG 107
           +H+  + +G  S     N LI  Y +    + AR++F  + E  + VS+ S++  Y+   
Sbjct: 160 LHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           +   AL L+ +M    +  + FT A+V+ A + + DL+ G Q H  +   G+  N  V S
Sbjct: 220 EGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGS 279

Query: 168 SLVDMYGKCND-VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-GHEALEMFREFNYQSR 225
            L+D+Y KC   +   R+VFD +   ++V W ++I  ++       EALE FR+      
Sbjct: 280 GLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGH 339

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYS 284
            RP+   L  VI+AC+++     G+  HG+ ++     N + V +AL+ MY+KCG++  +
Sbjct: 340 -RPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDA 398

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
             +F+ +   + V+Y SMI G A++G+G  SL LF  M+  G  P ++TF+ VL AC+H+
Sbjct: 399 KTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHT 458

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G V++G  + + M +K+GI P+A H++C++D+LGR G+L EA +L ++I  DP  G   W
Sbjct: 459 GRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDP--GFFFW 516

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
             LL A R+HG V++A++A+N+L++ +   A  YV L+N Y+  G  ++  S+R  M+  
Sbjct: 517 SALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDR 576

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGG-KTGLVFV 523
           G+ K+PGCSW+E+  + + F A +       ++   L E+ RK+K+ GY    ++ LV  
Sbjct: 577 GVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGG 636

Query: 524 DVEDEAREE--IVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
           D     REE   +G HSE+LA++FGL+S  +G  I + KNLR+C DCH+  K IS++V+R
Sbjct: 637 DDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKR 696

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           +  VRD +RFH F++G CSCG +W
Sbjct: 697 EITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 222/453 (49%), Gaps = 17/453 (3%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           +S +   HF+    +C+ L    S    +       N F+ N LI+ Y +    +VA QL
Sbjct: 41  TSTYLSNHFLLLYSKCRRL----SAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQL 96

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FDEM +P+ VSY +L+A Y   G  Q A  LF +M    +  + FT + +I AC +   L
Sbjct: 97  FDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGL 156

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVA 203
           I  +Q+H      G    + V ++L+  Y K   +  ARR+F  +   R+ VSW S++VA
Sbjct: 157 I--RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVA 214

Query: 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263
           + Q+ +G +ALE++ E   +     +   LASV+ A  ++  L+ G   H  +++SG   
Sbjct: 215 YMQHREGSKALELYLEMTVRGL-IVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQ 273

Query: 264 NDVVASALVDMYAKCGSVNYS-DKVFNRISNPSVVTYTSMIVGAAKY-GLGRFSLDLFNE 321
           N  V S L+D+Y+KCG       KVF+ ISNP +V + +MI G + Y  L   +L+ F +
Sbjct: 274 NSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQ 333

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY-TCVVDMLGRT 380
           +   G +P+D + V V+ ACS+     +G Q +  +  K  I  +       ++ M  + 
Sbjct: 334 LQVVGHRPDDCSLVCVISACSNMSSPSQGRQ-VHGLALKLDIPSNRISVNNALIAMYSKC 392

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYV 439
           G L +A  L  ++   P+   + + ++++    HG    ++    +++E      N  ++
Sbjct: 393 GNLRDAKTLFDTM---PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFI 449

Query: 440 TLSNTYALAGEWENVHSLRSEMKRT-GIHKEPG 471
           ++    A  G  E+     + MK+  GI  E G
Sbjct: 450 SVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           H     +  C +   L +GK  H + ++S    +  +++  + +Y+KC  ++ + +VF+ 
Sbjct: 9   HNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
             + +V ++ ++I   AK      +  LF+EM     +P+ V++  ++ A +  G     
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYARRGDTQPA 124

Query: 351 IQ 352
            Q
Sbjct: 125 FQ 126


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/544 (36%), Positives = 312/544 (57%), Gaps = 10/544 (1%)

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM-GQPQIALLLFQKMLG 121
           F  N L++ Y +      A +LF  M + NVVS+T+++A   N  G+ + AL    +M  
Sbjct: 108 FVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRR 167

Query: 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
           + V  N +TF++V+ AC     L     +H  I   G   ++ V SSL+D Y K  D+D 
Sbjct: 168 DGVAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDS 224

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241
            R VFD M   ++V W SII   AQ+  G  A+E+F     +S    NQ  L SV+ AC 
Sbjct: 225 GRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMK-ESGFLANQGTLTSVLRACT 283

Query: 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
            +  L  G+  H  V++   +   ++ +AL+DMY KCG +  +D +F+R+ +  V+++++
Sbjct: 284 GMVMLEVGRQVHAHVLKYDRDL--ILHNALLDMYCKCGCLLDADALFSRMHDRDVISWST 341

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI G A+ G    +L +F+ M + G  PN++T VGVL ACSH+GLV++G  +  SM + +
Sbjct: 342 MISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLF 401

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           GI P+ +H  C+VD+LGR G+LDEA K    ++ +PD   ++W TLL A R+H    +A 
Sbjct: 402 GIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDS--VIWRTLLGACRMHKNATLAS 459

Query: 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQT 481
            A+ ++++   +   A + LSN YA   +W N       M+  G+ KEPG SW+E+    
Sbjct: 460 YAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLV 519

Query: 482 YAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERL 541
           + F AG         ++  L  L R+ K+ GYV  +T  V  D+  E +E+++  HSE+L
Sbjct: 520 HVFIAGELSHPCSDRIVQELNRLIRRAKDLGYV-PQTEFVLQDLGTEQKEDLLKYHSEKL 578

Query: 542 ALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
           A+AFG ++  +G  +RIMKNLR+C DCH   KL+S    +  ++RD  RFHHF++G CSC
Sbjct: 579 AIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSC 638

Query: 602 GDFW 605
           GD+W
Sbjct: 639 GDYW 642



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 120/217 (55%), Gaps = 3/217 (1%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
           F   L  C     LA++H++I+K G  S+ F  + LI+ Y++L      R +FDEM+  +
Sbjct: 177 FSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCD 236

Query: 93  VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHT 152
           +V + S++AG+   G    A+ LF +M  +    N+ T  +V++AC+ +  L  G+Q+H 
Sbjct: 237 LVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHA 296

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
           H+    +  +L++ ++L+DMY KC  +  A  +F  M  R+V+SW+++I   AQN +  E
Sbjct: 297 HV--LKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVE 354

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
           AL++F     +    PN   +  V+ AC+  G +  G
Sbjct: 355 ALKVFDLMKAEG-PTPNNITMVGVLFACSHAGLVEDG 390



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 169/376 (44%), Gaps = 27/376 (7%)

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE------TFGFQ 160
           G    AL L   +    V  +  +   +IK C     +  G+ IH H+            
Sbjct: 45  GPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATH 104

Query: 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220
            +L V +SLV MY K   +D A  +F  M  RNVVSWT+++ A A NA G +  E  R  
Sbjct: 105 GSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALA-NAPGRKK-EALRFL 162

Query: 221 NYQSRD--RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
               RD    N +  +SV+ AC + G L +    H  +++ G + +  V S+L+D Y K 
Sbjct: 163 VEMRRDGVAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKL 219

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338
           G ++    VF+ +    +V + S+I G A+ G G  +++LF  M   G   N  T   VL
Sbjct: 220 GDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVL 279

Query: 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398
            AC+   +++ G Q + +   KY    D   +  ++DM  + G L +A  L   +    D
Sbjct: 280 RACTGMVMLEVGRQ-VHAHVLKYD--RDLILHNALLDMYCKCGCLLDADALFSRMH---D 333

Query: 399 GGPLLWGTLLSASRLHGRVDIAVEASN--QLIESNQQVANAYVTLSNTYAL--AGEWEN- 453
              + W T++S    +GR   +VEA     L+++     N    +   +A   AG  E+ 
Sbjct: 334 RDVISWSTMISGLAQNGR---SVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDG 390

Query: 454 VHSLRSEMKRTGIHKE 469
            H  RS  K  GI  E
Sbjct: 391 WHYFRSMDKLFGIQPE 406


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/623 (32%), Positives = 333/623 (53%), Gaps = 68/623 (10%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYV--RLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           L  +H+ +L+SG   + +    L+ CY          A ++F  +  PNV  +  ++ G 
Sbjct: 49  LTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGC 108

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH-----------T 152
           +   +   A+  + +M+ +   PN+FT+ T+ KACS+   +  G+QIH            
Sbjct: 109 LENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167

Query: 153 HIETFGFQY-------------------NLVVCSSLVDMYGKCN---------------- 177
           HI++ G Q                    ++V  ++++D Y KC                 
Sbjct: 168 HIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 178 ---------------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                          ++  AR++FD M  R+ +SW+S++  +    +  EALE+F++   
Sbjct: 228 IGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ- 286

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +   RP + +L+SV+ AC+++G +  G+  H  + R+  + + V+ +AL+DMYAKCG ++
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLD 346

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
              +VF  +    + T+ +MI G A +G    +L+LF+++    +KPN +T VGVL AC+
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+G VD+G++   +M   YG+ P+ +HY C+VD+LGR+G   EA  L  S+ + P+    
Sbjct: 407 HAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAA-- 464

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LL A R+HG  D+A      L+E   Q +  YV LSN YA  G +++V  +R  MK
Sbjct: 465 VWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK 524

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             GI   PG S V++    + F  G+    +  E+   L+ ++ +++  G+    T  V 
Sbjct: 525 NRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH-SPDTSQVL 583

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+++E +E  V  HSE+LA+AFGLI+   G  I I+KNLR+C DCH   KLIS I +R+
Sbjct: 584 FDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDRE 643

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD  R+HHF+NG+CSC DFW
Sbjct: 644 IIVRDRVRYHHFKNGTCSCKDFW 666


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/587 (32%), Positives = 327/587 (55%), Gaps = 43/587 (7%)

Query: 58  FLSNTFTLNHLINCYVRL------KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI 111
           ++  T   +HL+  +V+       K    A Q+ D   +P + +  S++  +     P+ 
Sbjct: 30  YVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEK 89

Query: 112 ALLLFQKML--GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169
           +   ++++L  GN + P+ +T   +++AC+ L    TG Q+H      GF  +  V + L
Sbjct: 90  SFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGL 149

Query: 170 VDMYG-------------------------------KCNDVDGARRVFDLMGCRNVVSWT 198
           + +Y                                +C DV  AR++F+ M  R+ ++W 
Sbjct: 150 ISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWN 209

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           ++I  +AQ  +  EAL +F     +   + N   + SV++AC  LG L  G+ AH  + R
Sbjct: 210 AMISGYAQVGESREALNVFHLMQLEGV-KVNGVAMISVLSACTQLGALDQGRWAHSYIER 268

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           +  +    +A+ LVD+YAKCG +  + +VF  +   +V T++S + G A  G G   L+L
Sbjct: 269 NKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLEL 328

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F+ M   G+ PN VTFV VL  CS  G VDEG +H DSM  ++GI P  +HY C+VD+  
Sbjct: 329 FSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYA 388

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R GRL++A  + + + + P     +W +LL ASR++  +++ V AS +++E       AY
Sbjct: 389 RAGRLEDAVSIIQQMPMKPHAA--VWSSLLHASRMYKNLELGVLASKKMLELETANHGAY 446

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           V LSN YA + +W+NV  +R  MK  G+ K+PGCS +E+  + + F+ G+    + +++ 
Sbjct: 447 VLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQID 506

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
           ++ +++ R+++  GY    T ++F D+++E +E+ + LHSE+ A+AFG++S+ + + IRI
Sbjct: 507 AVWKDISRRLRLAGYKADTTPVMF-DIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRI 565

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +KNLR+C DCH V  +IS I  R+ +VRD NRFHHF++G CSC  FW
Sbjct: 566 VKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 322/603 (53%), Gaps = 38/603 (6%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT--QVARQLFDEMLEPNVV 94
           L+ C +   L  +H+ +L++    + F  + LI   +         A ++  ++  PN+ 
Sbjct: 24  LECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLF 83

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154
            Y +L+ G      P+ +   + K L   + P+  T   ++KAC+ L +   G Q H   
Sbjct: 84  IYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQA 143

Query: 155 ETFGFQYNLVVCSSLVDMYG-------------------------------KCNDVDGAR 183
              GF+ +  V +SLV MY                                +C D   AR
Sbjct: 144 IKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSAR 203

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            +FD M  RN+V+W+++I  +A+N    +A+E F     +     N+ ++  VI++CA L
Sbjct: 204 ELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGV-VANETVMVGVISSCAHL 262

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
           G L  G+ AH  V+R+    N ++ +A+VDMYA+CG+V  +  VF ++    V+ +T++I
Sbjct: 263 GALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALI 322

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
            G A +G    +L  F+EM  +G  P D+TF  VL ACSH+G+V+ G++  +SM R +G+
Sbjct: 323 AGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGV 382

Query: 364 IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEA 423
            P  +HY C+VD+LGR G+L +A K    + V P+    +W  LL A R+H  V++    
Sbjct: 383 EPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAP--IWRALLGACRIHKNVEVGERV 440

Query: 424 SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYA 483
              L+E   + +  YV LSN YA A +W++V  +R  MK  G+ K PG S +EI  + + 
Sbjct: 441 GKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHE 500

Query: 484 FYAGNALFERGSEVLSLLRE-LERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLA 542
           F  G+       ++  +  + +  K+K  GYVG     +F D+++E +E  +  HSE+LA
Sbjct: 501 FTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMF-DIDEEEKEGALHRHSEKLA 559

Query: 543 LAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCG 602
           +A+G++ I     IRI+KNLR+C DCH   KLIS + E + +VRD NRFHHF+ G+CSC 
Sbjct: 560 IAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCM 619

Query: 603 DFW 605
           D+W
Sbjct: 620 DYW 622


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 324/551 (58%), Gaps = 21/551 (3%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            +TF+ N +++CYVR    + A+  FD M   +  S+ +++ GY   G+ + A  LF  M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
           +      NE ++  +I       DL    +  +H         +V  ++++  Y K   V
Sbjct: 182 MEK----NEVSWNAMISGYIECGDL----EKASHFFKVAPVRGVVAWTAMITGYMKAKKV 233

Query: 180 DGARRVF-DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
           + A  +F D+   +N+V+W ++I  + +N++  + L++FR    +   RPN   L+S + 
Sbjct: 234 ELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM-LEEGIRPNSSGLSSALL 292

Query: 239 ACASLGRLVSGKVAHGVVVRSG-CEFNDVVA-SALVDMYAKCGSVNYSDKVFNRISNPSV 296
            C+ L  L  G+  H +V +S  C  NDV A ++L+ MY KCG +  + K+F  +    V
Sbjct: 293 GCSELSALQLGRQIHQIVSKSTLC--NDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V + +MI G A++G    +L LF EMI   I+P+ +TFV VL AC+H+GLV+ G+ + +S
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFES 410

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           M R Y + P   HYTC+VD+LGR G+L+EA KL +S+   P     ++GTLL A R+H  
Sbjct: 411 MVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAA--VFGTLLGACRVHKN 468

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           V++A  A+ +L++ N Q A  YV L+N YA    WE+V  +R  MK + + K PG SW+E
Sbjct: 469 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFV--DVEDEAREEIV 534
           IR++ + F + + +     E+ S+ ++L+   K+    G K  L F   +VE+E +E+++
Sbjct: 529 IRNKVHHFRSSDRIH---PELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLL 585

Query: 535 GLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF 594
             HSE+LA+AFG I +P+G  I++ KNLR+C DCH   K IS+I +R+ +VRD  RFHHF
Sbjct: 586 LWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHF 645

Query: 595 RNGSCSCGDFW 605
           ++GSCSCGD+W
Sbjct: 646 KDGSCSCGDYW 656



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 59/311 (18%)

Query: 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN-AQGHEALEMFRE------FNYQ---- 223
           +  D+DGA RVF  M  +N ++W S+++  +++ ++  EA ++F E      F+Y     
Sbjct: 73  RSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLS 132

Query: 224 ------SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR------SGCEFNDVVASAL 271
                 + ++             AS   +++G    G + +      S  E N+V  +A+
Sbjct: 133 CYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAM 192

Query: 272 VDMYAKCG-------------------------------SVNYSDKVFNRIS-NPSVVTY 299
           +  Y +CG                                V  ++ +F  ++ N ++VT+
Sbjct: 193 ISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            +MI G  +       L LF  M+  GI+PN       L  CS    +  G Q +  +  
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQIVS 311

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           K  +  D    T ++ M  + G L +A+KL    +V      + W  ++S    HG  D 
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKL---FEVMKKKDVVAWNAMISGYAQHGNADK 368

Query: 420 AVEASNQLIES 430
           A+    ++I++
Sbjct: 369 ALCLFREMIDN 379



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 40  CKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           C  L +L     +H  + KS   ++   L  LI+ Y +  +   A +LF+ M + +VV++
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
            ++++GY   G    AL LF++M+ N + P+  TF  V+ AC+           H  +  
Sbjct: 354 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN-----------HAGLVN 402

Query: 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM 216
            G  Y      S+V  Y      D    + DL+G               +  +  EAL++
Sbjct: 403 IGMAY----FESMVRDYKVEPQPDHYTCMVDLLG---------------RAGKLEEALKL 443

Query: 217 FREFNYQSRDRPNQHMLASVINAC 240
            R   +    RP+  +  +++ AC
Sbjct: 444 IRSMPF----RPHAAVFGTLLGAC 463


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 306/561 (54%), Gaps = 47/561 (8%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN 105
           L S+H+   K GFL  T T N  I  Y    +   AR++FD M   + VS+ S++ GY  
Sbjct: 30  LPSLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAV 89

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G    A  LF+++L     P   T+                                  
Sbjct: 90  SGDVGSAQRLFERVLA----PTPVTW---------------------------------- 111

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S+V  + +  DV+ ARRVF+ M  R++VSW ++I     N    EAL +FR +  +  
Sbjct: 112 -TSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFR-WMMEEG 169

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             PN+  + SV++AC   G L +GK  H  V +    +++ + +ALVDMYAKCG+V  + 
Sbjct: 170 FVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELAL 229

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHS 344
           +VF  +   +  T+ +MI G A  G    +LD+F +M   G + P++VTFVGVL ACSH+
Sbjct: 230 EVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHA 289

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           G VD G +H  ++ +KYG+    +HY C+VD+L R+G L EA+KL   + + PD   ++W
Sbjct: 290 GFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPD--VVVW 347

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
             LL   RLH  V +A    N + E     +  +V LSN YA  G W  V  +R  M+  
Sbjct: 348 RALLGGCRLHKNVKMA---ENVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSK 404

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           GI K PGCS VE+    + F +G+       ++ + L E+  +M++ GYV  +T  VF D
Sbjct: 405 GIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVT-ETAEVFYD 463

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
           +EDE +E+ +G HSE+LA+AFGLI  P   TIRI+KNLR C DCH   KL+S I  R+ V
Sbjct: 464 IEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIV 523

Query: 585 VRDVNRFHHFRNGSCSCGDFW 605
           VRD  RFHHFR G+CSC DFW
Sbjct: 524 VRDRARFHHFRGGACSCNDFW 544



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 51/257 (19%)

Query: 231 HMLASVINACASLGRLV--------------SGKVAHGVVVRSGCEFNDVVA-SALVDMY 275
           H L S+   C  LG L+              +G+V     V  G    D V+ ++++  Y
Sbjct: 28  HHLPSLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGY 87

Query: 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG------------------------- 310
           A  G V  + ++F R+  P+ VT+TSM+ G  + G                         
Sbjct: 88  AVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMIS 147

Query: 311 ------LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
                 L   +L LF  M+  G  PN  T V VL AC+ +G ++ G + +     K  + 
Sbjct: 148 GCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETG-KWVHVFVEKKRLR 206

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424
            D    T +VDM  + G ++ A ++   ++         W  +++   ++G    A++  
Sbjct: 207 WDEFLGTALVDMYAKCGAVELALEVFTGLRAR---NTCTWNAMINGLAMNGYSAKALDMF 263

Query: 425 NQLIESNQQVANAYVTL 441
            Q+ E N  VA   VT 
Sbjct: 264 RQM-ELNGTVAPDEVTF 279


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 318/575 (55%), Gaps = 12/575 (2%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLIN-CYVRLKKT-QVARQLFDEMLEPNVV 94
           LQ C +L  L  + + ++ +G  ++    N ++N C V +  +   A+ LF  +L P   
Sbjct: 16  LQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQ 75

Query: 95  SYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPNEFTFATVIKACSMLADLITGKQIHTH 153
           ++ S++ G+     P  A+  + +ML + V  P+ FTF+  +KAC  +  L   +++H  
Sbjct: 76  AWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGS 135

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   G++ ++VVC+ LV  YG+   V+ AR VFD M  R++V+W ++I  ++Q     EA
Sbjct: 136 IIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEA 195

Query: 214 LEMFREFNYQSRDRP--NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           L   R ++Y   +    +   L  ++++C+ +G L  G   H +    G   N  V +AL
Sbjct: 196 L---RVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNAL 252

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331
           +DMYAKCGS++ + +VFN +   +  T+ SMIVG   +G G  ++  FN+M+  G++PN 
Sbjct: 253 IDMYAKCGSLDGALEVFNGMPRDAF-TWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNS 311

Query: 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391
           + F+G+L  CSH GLV+EG++    M  K+ + P  KHY C+VDM GR G+L++A ++  
Sbjct: 312 IAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIG 371

Query: 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451
                 D  P+LW  LLS+S++H  V I   A   L +     A   V L+  YA A + 
Sbjct: 372 DSPWQDD--PVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDE 429

Query: 452 ENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKER 511
           + V  +R  +K+ GI   PG SW+E+ DQ + F   +        +   L E+  K    
Sbjct: 430 QGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMA 489

Query: 512 GYVGGKTGLVF-VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHD 570
           GYV  K+  +F     +E  E     HSE+LA+AFGL   P+G ++RI+KNLR+CRDCH+
Sbjct: 490 GYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHE 549

Query: 571 VFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             K +S    RD +VRD  RFHHF+ G CSC D+W
Sbjct: 550 FTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 156/342 (45%), Gaps = 32/342 (9%)

Query: 34  IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           I+ L++C+       VH  I+++G+  +      L+ CY R    ++AR +FD M E ++
Sbjct: 123 IKALKKCE------EVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDL 176

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V++ ++++ Y   G  Q AL ++  M    V  + FT   ++ +CS +  L  G ++H  
Sbjct: 177 VAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRI 236

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G   N+ V ++L+DMY KC  +DGA  VF+ M  R+  +W S+IV    +  G EA
Sbjct: 237 ASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEA 295

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALV 272
           +  F +   ++  RPN      ++  C+  G +  G +  H +  +   +        +V
Sbjct: 296 IYFFNQM-LEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIV 354

Query: 273 DMYAKCGSVNYS-----------DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
           DMY + G +  +           D V  RI   S   + ++++G          + + N 
Sbjct: 355 DMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIG---------EIAMRNL 405

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
                +   D   +  ++A ++    ++G+  +  + +K GI
Sbjct: 406 SQLGAVNAGDCVLLATIYAGAND---EQGVARMRKLIKKQGI 444


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 332/564 (58%), Gaps = 18/564 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQ---VARQLFDEMLEPNVVSYTSLMAGYIN 105
           +HS +L+ G +S+T     L++ Y +L+  Q    AR++F  M   NV+S+T+L++GY+ 
Sbjct: 271 LHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQ 330

Query: 106 MG-QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV 164
            G Q   A+ L  +ML   + PN  T+++++KAC+ L+D  +G+QIH  +         V
Sbjct: 331 CGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNV 390

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ-NAQGHEALEMFREFNYQ 223
           V ++LV MY +   ++ AR+ FD +  RN++S +S I    + NA     +E        
Sbjct: 391 VGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSSQIE-------- 442

Query: 224 SRDRP-NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           S D   +    AS+++A A++G    G+  H + +++G E +  ++++LV MY++CG ++
Sbjct: 443 SMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLD 502

Query: 283 YSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
            + + F+ + +  +V+++TS+I   AK+G    +L LF++MI  G+KPNDVT++ VL AC
Sbjct: 503 DACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSAC 562

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           SH GLV EG ++  SM + + +IP  +HY C+VD+L R+G + EA +    +    D   
Sbjct: 563 SHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADA-- 620

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
           L+W TLL A R +  ++I   A+  +I+   Q    YV LSN YA  G W+ V  +RS M
Sbjct: 621 LVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLM 680

Query: 462 KRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLV 521
           +   + KE G SW+ + +  + F AG+    R  E+ + L  L R++K+ GYV   T +V
Sbjct: 681 RHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYV-PDTSIV 739

Query: 522 FVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER 581
             D+ D+ +E+ +  HSE++A+AFGLI+      IRI KNLR+C DCH   K IS    R
Sbjct: 740 LHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGR 799

Query: 582 DFVVRDVNRFHHFRNGSCSCGDFW 605
           + ++RD NRFH  ++G CSCG++W
Sbjct: 800 EIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 195/382 (51%), Gaps = 14/382 (3%)

Query: 54  LKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112
           +K+GF     ++   LI+ + R      AR++F+ ++E  VV +T ++  Y+  G    A
Sbjct: 174 IKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKA 233

Query: 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172
           + LF  ML +   P+ +T ++++ AC+       G+Q+H+ +   G   +  V   LVDM
Sbjct: 234 VELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDM 293

Query: 173 YGKC---NDVDGARRVFDLMGCRNVVSWTSIIVAHAQ-NAQGHEALEMFREFNYQSRDRP 228
           Y K      ++ AR+VF  M   NV+SWT++I  + Q   Q + A+E+  E   +S + P
Sbjct: 294 YTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIE-P 352

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N    +S++ ACA+L    SG+  H  V+++     +VV +ALV MYA+ G +  + K F
Sbjct: 353 NHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAF 412

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           +++   ++++ TS  +G      GR +    +++ S  +  +  TF  +L A +  GL  
Sbjct: 413 DQLYERNLLS-TSSDIGET----GRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPT 467

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G Q L ++  K G   D      +V M  R G LD+A +     +++ D   + W +++
Sbjct: 468 KG-QQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFD--EMEDDHNVISWTSII 524

Query: 409 SASRLHGRVDIAVEASNQLIES 430
           SA   HG  + A+   + +I S
Sbjct: 525 SALAKHGHAERALSLFHDMILS 546



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 180/353 (50%), Gaps = 18/353 (5%)

Query: 48  SVHSEILKSGFL-SNTFTLNHLINCYVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYIN 105
           ++H  +L +  L ++    N L+  Y +    + AR++FD M    ++VS+T++      
Sbjct: 64  ALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTR 123

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC--SMLADLITGKQIHTHIETFGFQYNL 163
            G  Q AL+L  +ML + + PN FT      AC    L     G  +   I+T  +  ++
Sbjct: 124 NGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDV 183

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            V  +L+DM+ +  D+  AR+VF+ +  R VV WT +I  + Q     +A+E+F     +
Sbjct: 184 SVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM-LE 242

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC---GS 280
               P+ + ++S+++ACA  G    G+  H +V+R G   +  V+  LVDMY K     S
Sbjct: 243 DGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQS 302

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKY-GLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339
           +  + KVF R+   +V+++T++I G  +  G    +++L  EM++  I+PN +T+  +L 
Sbjct: 303 MECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLK 362

Query: 340 ACSHSGLVDEGIQ-HLDSMYRKYG---IIPDAKHYTCVVDMLGRTGRLDEAYK 388
           AC++    D G Q H   M    G   ++ +A     +V M   +G ++EA K
Sbjct: 363 ACANLSDQDSGRQIHARVMKTSIGNVNVVGNA-----LVSMYAESGCMEEARK 410



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 149/297 (50%), Gaps = 15/297 (5%)

Query: 147 GKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSWTSIIVAH 204
           G+ +H  +  T     + +V +SL+ MY KC  V  ARRVFD M G R++VSWT++    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV--SGKVAHGVVVRSGCE 262
            +N    EAL +  E   +S  RPN   L +  +AC   G L   SG    G  +++G  
Sbjct: 122 TRNGAEQEALVLLGEM-LESGLRPNAFTLCAAAHACFP-GELFRSSGGTVLGFAIKTGFW 179

Query: 263 FNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321
             DV V  AL+DM+A+ G +  + KVFN +   +VV +T MI    + G    +++LF  
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG 381
           M+  G +P+  T   ++ AC+  G    G Q L S+  + G++ D      +VDM  +  
Sbjct: 240 MLEDGFEPDGYTMSSMVSACAEQGSAGLG-QQLHSLVLRLGLVSDTCVSCGLVDMYTKL- 297

Query: 382 RLDEAYKLAKSI-QVDPDGGPLLWGTLLS-----ASRLHGRVDIAVEASNQLIESNQ 432
           +++++ + A+ + +  P    + W  L+S       + +  V++  E  N+ IE N 
Sbjct: 298 QMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNH 354


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/636 (34%), Positives = 339/636 (53%), Gaps = 86/636 (13%)

Query: 45  SLASVHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           +L  +HS+IL    L    +L   L+  Y    +    R +FDE+ + NVV +  ++  Y
Sbjct: 53  TLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSY 112

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +N G  Q ALL+F+ M     +P+ +T+  V+KACS+  +L  G QIH  +   G   NL
Sbjct: 113 VNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNL 172

Query: 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223
            + + LV MYGKC  +D ARRV D M  R++VSW S++  +AQN + ++AL++ RE    
Sbjct: 173 YIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREME-D 231

Query: 224 SRDRPNQHMLASVINACASLG-----------------RLVSGKVAHGVVVRSGCEFNDV 266
            + +P+   + S++ A  +                    L+S  V   V V      N+ 
Sbjct: 232 LKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYV------NNA 285

Query: 267 VASALVDMYAK-------------------CGSVNYS-------DKVFNRISNPSVVTYT 300
           + +  VD+Y +                   CG ++ +       + V  +   P+++   
Sbjct: 286 MPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLEN 345

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISR-------------------------------GIKP 329
           ++I   AK G  + +  +F++M+ R                               G  P
Sbjct: 346 ALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTP 405

Query: 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
           + + FV VL ACSH+GLVDEG ++  ++  +YGI P  +HY C+VD+LGR G++DEAY L
Sbjct: 406 DWIAFVSVLAACSHAGLVDEG-RYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHL 464

Query: 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
            + + ++P+    +WG+LLSA R++  ++IA+ A++ L +   + +  YV LSN YA AG
Sbjct: 465 TRQMPMEPN--ERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAG 522

Query: 450 EWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509
            W++V ++RS M   GI K PG S VEI D  Y F AG+    +  E+   L  L  +MK
Sbjct: 523 RWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMK 582

Query: 510 ERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569
           E GY+  +T     DVE+E +E  + +HSE+LA+ F +++   G TIRI KN+R+C DCH
Sbjct: 583 ELGYM-PETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCH 641

Query: 570 DVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
              KLIS I ER+ ++RD +RFHHFR+G CSCGD+W
Sbjct: 642 VATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 180/480 (37%), Positives = 299/480 (62%), Gaps = 10/480 (2%)

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
           EFT++ ++ A      +I+  ++H  +    ++ +  V ++L+D Y K   V+ A +VF 
Sbjct: 1   EFTYSVILTALP----VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 56

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL-GRL 246
            +  +++V+W++++  +AQ  +   A++MF E   +   +PN+   +S++N CA+    +
Sbjct: 57  GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT-KGGIKPNEFTFSSILNVCAATNASM 115

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
             GK  HG  ++S  + +  V+SAL+ MYAK G++  +++VF R     +V++ SMI G 
Sbjct: 116 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 175

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366
           A++G    +LD+F EM  R +K + VTF+GV  AC+H+GLV+EG ++ D M R   I P 
Sbjct: 176 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 235

Query: 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
            +H +C+VD+  R G+L++A K+ +++  +P  G  +W T+L+A R+H + ++   A+ +
Sbjct: 236 KEHNSCMVDLYSRAGQLEKAMKVIENMP-NP-AGSTIWRTILAACRVHKKTELGRLAAEK 293

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           +I    + + AYV LSN YA +G+W+    +R  M    + KEPG SW+E++++TY+F A
Sbjct: 294 IIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLA 353

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G+       ++   L +L  ++K+ GY    T  V  D++DE +E ++  HSERLA+AFG
Sbjct: 354 GDRSHPLKDQIYMKLEDLSTRLKDLGY-EPDTSYVLQDIDDEHKEAVLAQHSERLAIAFG 412

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHF-RNGSCSCGDFW 605
           LI+ PKG  + I+KNLR+C DCH V KLI+ I ER+ VVRD NRFHHF  +G CSCGDFW
Sbjct: 413 LIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 156/296 (52%), Gaps = 14/296 (4%)

Query: 43  LISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102
           +IS + VH++++K+ +  ++     L++ YV+L K + A ++F  + + ++V++++++AG
Sbjct: 13  VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAG 72

Query: 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML-ADLITGKQIHTHIETFGFQY 161
           Y   G+ + A+ +F ++    + PNEFTF++++  C+   A +  GKQ H          
Sbjct: 73  YAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDS 132

Query: 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221
           +L V S+L+ MY K  +++ A  VF     +++VSW S+I  +AQ+ Q  +AL++F+E  
Sbjct: 133 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMK 192

Query: 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA--SALVDMYAKCG 279
            + + + +      V  AC   G +  G+    ++VR  C+        S +VD+Y++ G
Sbjct: 193 -KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRD-CKIAPTKEHNSCMVDLYSRAG 250

Query: 280 SVNYSDKVFNRISNPSVVTYTSMIVGA----AKYGLGRFSLDLFNEMISRGIKPND 331
            +  + KV   + NP+  T    I+ A     K  LGR + +    M     KP D
Sbjct: 251 QLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAM-----KPED 301


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 323/588 (54%), Gaps = 18/588 (3%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNH-------LINCYVRLKKTQVA 81
           T   +   L  C   IS  S+H  I     + N  +L H       LI  +   ++  +A
Sbjct: 130 TPEAYTDLLHAC---ISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLA 186

Query: 82  RQLFDEMLEPNVVS---YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           R++FD++ + ++++   + ++  GY   G P+ AL+++  ML + + P  F+ +  +KAC
Sbjct: 187 RKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKAC 246

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
             L DL  G+ IH  I     + + VV + L+ +Y +    D AR+VFD M  RNVV+W 
Sbjct: 247 VDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWN 306

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I   ++  + HE   +FR+   +     +   L +++ AC+ +  L++GK  H  +++
Sbjct: 307 SLISVLSKKVRVHEMFNLFRKMQEEMIGF-SWATLTTILPACSRVAALLTGKEIHAQILK 365

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           S  + +  + ++L+DMY KCG V YS +VF+ +    + ++  M+   A  G     ++L
Sbjct: 366 SKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINL 425

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F  MI  G+ P+ +TFV +L  CS +GL + G+   + M  ++ + P  +HY C+VD+LG
Sbjct: 426 FEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILG 485

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R G++ EA K+ +++   P     +WG+LL++ RLHG V +   A+ +L          Y
Sbjct: 486 RAGKIKEAVKVIETMPFKPSAS--IWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNY 543

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNAL-FERGSEV 497
           V +SN YA A  W+NV  +R  MK+ G+ KE GCSWV+++D+   F AG    F    E 
Sbjct: 544 VMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEY 603

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             +  EL+  +++ GY    T +V  DV++E +   V  HSERLA  + LI   +G+ IR
Sbjct: 604 KKVWTELQEAIEKSGY-SPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIR 662

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I KNLR+C DCH   K++S +  R  V+RD  RFHHF +G CSC D+W
Sbjct: 663 ITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 200/548 (36%), Positives = 321/548 (58%), Gaps = 11/548 (2%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEP---NVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
           N ++ CY R      AR++F EM E    + VS+ +++       +   A+ LF++M+  
Sbjct: 178 NAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRR 237

Query: 123 LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC-NDVDG 181
            +  + FT A+V+ A + + DL+ G+Q H  +   GF  N  V S L+D+Y KC   +  
Sbjct: 238 GLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVE 297

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQ-GHEALEMFREFNYQSRDRPNQHMLASVINAC 240
            R+VF+ +   ++V W ++I   +       + L  FRE   ++  RP+      V +AC
Sbjct: 298 CRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQ-RNGFRPDDCSFVCVTSAC 356

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           ++L     GK  H + ++S   +N V V +ALV MY+KCG+V+ + +VF+ +   + V+ 
Sbjct: 357 SNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSL 416

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            SMI G A++G+   SL LF  M+ + I PN +TF+ VL AC H+G V+EG ++ + M  
Sbjct: 417 NSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKE 476

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           ++ I P+A+HY+C++D+LGR G+L EA ++ +++  +P  G + W TLL A R HG V++
Sbjct: 477 RFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNP--GSIEWATLLGACRKHGNVEL 534

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
           AV+A+N+ +      A  YV LSN YA A  WE   +++  M+  G+ K+PGCSW+EI  
Sbjct: 535 AVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDK 594

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD--VEDEAREEIVGLH 537
           + + F A +       E+   + ++ +KMK+ GYV      +  D  VE + RE  +  H
Sbjct: 595 KVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYH 654

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LA+AFGLIS  +G+ I ++KNLR+C DCH+  KLIS +  R+  VRD +RFH F+ G
Sbjct: 655 SEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEG 714

Query: 598 SCSCGDFW 605
            CSC D+W
Sbjct: 715 HCSCRDYW 722



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 8/289 (2%)

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
            N F+ N LIN Y +     +AR++FDE+ +P++VSY +L+A Y + G+    L LF+++
Sbjct: 73  PNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEV 132

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
               +  + FT + VI AC     L+  +Q+H  +   G      V ++++  Y +   +
Sbjct: 133 RELRLGLDGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKGFL 190

Query: 180 DGARRVFDLM---GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             ARRVF  M   G R+ VSW ++IVA  Q+ +G EA+ +FRE   +   + +   +ASV
Sbjct: 191 SEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGL-KVDMFTMASV 249

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC-GSVNYSDKVFNRISNPS 295
           + A   +  LV G+  HG++++SG   N  V S L+D+Y+KC GS+    KVF  I+ P 
Sbjct: 250 LTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPD 309

Query: 296 VVTYTSMIVGAAKY-GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343
           +V + +MI G + Y  L    L  F EM   G +P+D +FV V  ACS+
Sbjct: 310 LVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSN 358



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 146/321 (45%), Gaps = 44/321 (13%)

Query: 130 TFATVIKACSMLADLITGKQIHT---------------------------HIETFGF--- 159
           TF  ++KAC    DLITGK +H                            H     F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 160 QY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFR 218
           QY N+   ++L++ Y K + +  ARRVFD +   ++VS+ ++I A+A   +    L +F 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 219 EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278
           E   + R   +   L+ VI AC     LV  +  H  VV  G +    V +A++  Y++ 
Sbjct: 131 EVR-ELRLGLDGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRK 187

Query: 279 GSVNYSDKVFNRISNP---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV 335
           G ++ + +VF  +        V++ +MIV   ++  G  ++ LF EM+ RG+K +  T  
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMA 247

Query: 336 GVLHACSH-SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR-TGRLDEAYKLAKSI 393
            VL A +    LV  G +    M  K G   ++   + ++D+  +  G + E  K+ + I
Sbjct: 248 SVLTAFTCVKDLV--GGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEI 305

Query: 394 QVDPDGGPLLWGTLLSASRLH 414
              PD   +LW T++S   L+
Sbjct: 306 TA-PD--LVLWNTMISGFSLY 323


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 330/587 (56%), Gaps = 34/587 (5%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           V++ I  SG   N   ++ L++ Y++     VA++LFDE    N+    ++ + Y+  G 
Sbjct: 258 VYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGL 317

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + AL +F  M+ + V P+  +  + I +CS L +++ GK  H ++   GF+    +C++
Sbjct: 318 TREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA 377

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA-------------------- 208
           L+DMY KC+  D A R+FD M  + VV+W SI+  + +N                     
Sbjct: 378 LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSW 437

Query: 209 --------QG---HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
                   QG    EA+E+F     Q     +   + S+ +AC  LG L   K  +  + 
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE 497

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           ++G + +  + + LVDM+++CG    +  +FN ++N  V  +T+ I   A  G    +++
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIE 557

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF++MI +G+KP+ V FVG L ACSH GLV +G +   SM + +G+ P+  HY C+VD+L
Sbjct: 558 LFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLL 617

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
           GR G L+EA +L + + ++P+   ++W +LL+A R+ G V++A  A+ ++     +   +
Sbjct: 618 GRAGLLEEAVQLIEDMPMEPND--VIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGS 675

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN YA AG W ++  +R  MK  G+ K PG S ++IR +T+ F +G+        +
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
            ++L E+ ++    G+V   +  V +DV+++ +  ++  HSE+LA+A+GLIS  KG TIR
Sbjct: 736 EAMLDEVSQRASHLGHVPDLSN-VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIR 794

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           I+KNLR+C DCH   K  S +  R+ ++RD NRFH+ R G CSCGDF
Sbjct: 795 IVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 218/436 (50%), Gaps = 34/436 (7%)

Query: 13  LAASSLTRQN--KRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI- 69
           LA ++ T+ +   +S C TKA     L+ CK +  L   H  + K G  ++  T+  L+ 
Sbjct: 15  LATTTTTKPSLLNQSKC-TKAT-PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVA 72

Query: 70  -NCYVRLKKT-QVARQLFDEMLE-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            +C +  +++   A+++F+          Y SL+ GY + G    A+LLF +M+ + + P
Sbjct: 73  RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           +++TF   + AC+       G QIH  I   G+  +L V +SLV  Y +C ++D AR+VF
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  RNVVSWTS+I  +A+     +A+++F          PN   +  VI+ACA L  L
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGA 306
            +G+  +  +  SG E ND++ SALVDMY KC +++ + ++F+     ++    +M    
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS-----------HSGLVDEGIQHLD 355
            + GL R +L +FN M+  G++P+ ++ +  + +CS           H  ++  G +  D
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372

Query: 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
           ++               ++DM  +  R D A+++   +    +   + W ++++    +G
Sbjct: 373 NI------------CNALIDMYMKCHRQDTAFRIFDRMS---NKTVVTWNSIVAGYVENG 417

Query: 416 RVDIAVEASNQLIESN 431
            VD A E    + E N
Sbjct: 418 EVDAAWETFETMPEKN 433


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 311/563 (55%), Gaps = 12/563 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  I+  GF S+ +  N L+  Y +    Q A+ +F      NV S+T ++A + + G 
Sbjct: 79  IHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGH 138

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L + M    + PN  TF  ++ A + L+ L  G+ +H  I   GF  ++ V + 
Sbjct: 139 YMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANC 198

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY KC  +  A  VF+ +  R+V++WT+++ A+A N    +AL++F        + P
Sbjct: 199 LINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVE-P 257

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVV-VRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
            +    +V++ CA +     G+  HGV+  RS  E N  V +AL++MY KC S + + KV
Sbjct: 258 TEVTFVTVVDVCADIAVFGIGREVHGVIDARS--EANVCVGNALINMYGKCASPDEARKV 315

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-----GIKPNDVTFVGVLHACS 342
           F+ +    ++T+ SMI    + G G  +L+++  M        GI  +D+TF+GVL ACS
Sbjct: 316 FDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACS 375

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+GLV +  +   SM   YG  P +    C++D+LGR G LDEA +   S+   PD    
Sbjct: 376 HAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPD--HT 433

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +W  LL A   H  V+ A  A+++++      + +YV LSN YALA  W+++  +R  M 
Sbjct: 434 IWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMD 493

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
           + G+ K  G S +EI    + F AG+    R  E+   LR +E  ++ERGYV      V 
Sbjct: 494 QRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKA-VL 552

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            +   EA+E++   HSERLA+AFG+IS P G  +RIMKNLR+C DCH   K+IS    R 
Sbjct: 553 HNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRK 612

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD NRFH FRNGSCSC D+W
Sbjct: 613 IIVRDANRFHEFRNGSCSCEDYW 635



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 158/317 (49%), Gaps = 18/317 (5%)

Query: 124 VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183
           V P+    A  ++ C   A +  GK+IH HI   GF+ +  +C+ LV+MYGKC  +  A+
Sbjct: 53  VSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAK 112

Query: 184 RVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243
            VF +   RNV SWT ++ A A N    +AL +    + +    PN      ++ A A+L
Sbjct: 113 SVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGIS-PNSITFIELLGAVAAL 171

Query: 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI 303
             L  G+  H  +   G   +  VA+ L++MYAKC S+  +  VF  +++ SV+ +T+++
Sbjct: 172 SWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALV 231

Query: 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363
              A  G  R +L +F  M   G++P +VTFV V+  C+   +   G +        +G+
Sbjct: 232 AAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGRE-------VHGV 284

Query: 364 IPDAKHYT--CV----VDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
           I DA+     CV    ++M G+    DEA K+  ++Q       + W ++++    +G  
Sbjct: 285 I-DARSEANVCVGNALINMYGKCASPDEARKVFDAMQ---RKDIITWNSMIAVYGQNGYG 340

Query: 418 DIAVEASNQLIESNQQV 434
             A+E   ++ ES   +
Sbjct: 341 FQALEIYKRMQESRMTI 357



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 141/265 (53%), Gaps = 8/265 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H  I   GFL++ F  N LIN Y + +    A  +F+ +   +V+++T+L+A Y   G
Sbjct: 179 ALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNG 238

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
             + AL +F  M  + V P E TF TV+  C+ +A    G+++H  I+    + N+ V +
Sbjct: 239 FFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARS-EANVCVGN 297

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR-- 225
           +L++MYGKC   D AR+VFD M  +++++W S+I  + QN  G +ALE+++    +SR  
Sbjct: 298 ALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQ-ESRMT 356

Query: 226 ---DRPNQHMLASVINACASLGRLV-SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV 281
                 +      V+ AC+  G +  S K+   ++   G +   +    L+D+  + G +
Sbjct: 357 ILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWL 416

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGA 306
           + +++  N +      T  ++++GA
Sbjct: 417 DEAEEFINSMPYHPDHTIWTILLGA 441


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 321/573 (56%), Gaps = 10/573 (1%)

Query: 40  CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP--NVVSYT 97
           C H+  +  +HS    SGF S     N L+  Y +    + A  +F+ M E   + VS+ 
Sbjct: 151 CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 98  SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157
           S++  Y    +   AL L++ M+      + FT A+V+   S + DL  G Q H      
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKT 270

Query: 158 GFQYNLVVCSSLVDMYGKCN-DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQ-GHEALE 215
           GF  N  V S L+DMY KC   +  +R+VF+ +   ++V W ++I  ++QN +   EALE
Sbjct: 271 GFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALE 330

Query: 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDM 274
            FR+   ++   P+       I+AC++L     GK  H + ++S    N + V +ALV M
Sbjct: 331 CFRQMQ-RAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTM 389

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           Y+KCG++  + K+F R+   + VT  S+I G A++G+G  SL+LF +M++  I P  +T 
Sbjct: 390 YSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITL 449

Query: 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394
           V +L AC+H+G V+EG ++ + M   +GI P+A+HY+C++D+LGR G+L EA +L  ++ 
Sbjct: 450 VSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMP 509

Query: 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454
             P  G   W  LL A R +G +++A +A+NQ ++     A  Y+ L++ Y+ A +WE  
Sbjct: 510 FSP--GSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEA 567

Query: 455 HSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYV 514
             +R  M+  GI K+PGCSW+E+  + + F A +    R  E+   L E+  KMK  GYV
Sbjct: 568 ARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYV 627

Query: 515 GGKTGLVFVDVE--DEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVF 572
                    D E  ++ +E ++  HSE+LA+AFGL+    G  + ++KNLR+C DCH+  
Sbjct: 628 PDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAI 687

Query: 573 KLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           K +S I  R   VRD  RFH F +G CSCGD+W
Sbjct: 688 KFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 200/398 (50%), Gaps = 20/398 (5%)

Query: 25  SSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQL 84
           SS +   HFI    +C  L +     ++  +     N F+ N LI  Y +     VA  L
Sbjct: 41  SSTYLSNHFILLYSKCNLLTTAHHAFNQTHEP----NVFSFNALIAAYAKESLIHVAHHL 96

Query: 85  FDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144
           FD++ +P++VS+ +L+  Y + G    AL LF +M    +  + FTF+ VI AC     L
Sbjct: 97  FDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGL 156

Query: 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIV 202
           I  +Q+H+   + GF   + V +SL+  Y K   ++ A  VF+ MG   R+ VSW S+IV
Sbjct: 157 I--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIV 214

Query: 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
           A+ Q+ +G +AL ++R+  ++  +  +   LASV+   + +  L  G   H   +++G  
Sbjct: 215 AYGQHKRGLKALALYRDMVHRGFE-IDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFN 273

Query: 263 FNDVVASALVDMYAKCGS-VNYSDKVFNRISNPSVVTYTSMIVGAAKYG-LGRFSLDLFN 320
            N  V S L+DMYAKCG+ ++ S KVF  I    +V + +MI G ++   L   +L+ F 
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFR 333

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHY--TCVVDML 377
           +M   G  P+D +FV  + ACS+     +G Q H  +M  +   IP  +      +V M 
Sbjct: 334 QMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSE---IPSNQISVNNALVTMY 390

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
            + G L +A KL    Q  P    +   ++++    HG
Sbjct: 391 SKCGNLQDARKL---FQRMPQHNTVTLNSIIAGYAQHG 425



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 47/318 (14%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           +F  ++K+C    DL+TGK +HT         +  + +  + +Y KCN +  A   F+  
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS- 248
              NV S+ ++I A+A+ +  H A  +F +       +P+     ++INA A  G  +S 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQI-----PQPDLVSFNTLINAYADRGDTLSA 124

Query: 249 ----GKVAHGVVVRSGCEFNDVVAS----------------------------ALVDMYA 276
               G++    +V  G  F+ V+ +                            +L+  Y+
Sbjct: 125 LSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYS 184

Query: 277 KCGSVNYSDKVFNRISNP--SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF 334
           K G +  ++ VFN +       V++ SMIV   ++  G  +L L+ +M+ RG + +  T 
Sbjct: 185 KNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTL 244

Query: 335 VGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKHYTCVVDMLGRTGR-LDEAYKLAKS 392
             VL   S    +  G+Q H  ++  K G   +    + ++DM  + G  + E+ K+ + 
Sbjct: 245 ASVLTTFSCVEDLSGGLQFHAKAI--KTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE 302

Query: 393 IQVDPDGGPLLWGTLLSA 410
           I        ++W T++S 
Sbjct: 303 I---CGSDLVVWNTMISG 317


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/525 (36%), Positives = 299/525 (56%), Gaps = 4/525 (0%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           A  +F     PN+  + +++ GY     P  A+ L++ M    + PN +TF  V+ AC  
Sbjct: 20  AHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCK 79

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSI 200
           L  L  G+++H+ I   G  +   + + L+ +Y  C  +D A  +FD M   +  SW+++
Sbjct: 80  LLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTM 139

Query: 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260
           +  ++QN Q  E L++ RE   ++    +   LASV+  C  LG L  GK  H  + + G
Sbjct: 140 VSGYSQNGQAVETLKLLREMQAENVSS-DAFTLASVVGVCGDLGVLDLGKWVHSYIDKEG 198

Query: 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFN 320
            + + V+ +ALV MY+KCGS++ + KVF  ++   V T++ MI G A +G    +L LF+
Sbjct: 199 VKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFD 258

Query: 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
            M    I PN VTF  VL A SHSGLV++G Q  ++M+ +Y I P  KHY C+VD+  R 
Sbjct: 259 AMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRA 318

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440
           G +  A+K  +++ ++P+   +LW TLL A + HG   +    S ++++ +      YV 
Sbjct: 319 GMVGHAHKFIQTMPIEPN--VVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVF 376

Query: 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSL 500
           +SN YA  G W +V  +RS MK     K+ G S +EI    + F  G     +  ++  +
Sbjct: 377 VSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGM 436

Query: 501 LRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMK 560
           L ++ RK+K+ G+V   T  V  D+++E +E  +GLHSERLA+A+GL+  P G  IRI+K
Sbjct: 437 LHQMARKLKQVGHV-ASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVK 495

Query: 561 NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           NLR CRDCH+V KLIS++  R+ ++RD   FHHFR   CSC D+W
Sbjct: 496 NLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 31/322 (9%)

Query: 37  LQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ L     +HS+I+K+G    T  LN LI  Y        A  +FDEM EP+ 
Sbjct: 74  LNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDS 133

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
            S++++++GY   GQ    L L ++M    V  + FT A+V+  C  L  L  GK +H++
Sbjct: 134 ASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSY 193

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I+  G + ++V+ ++LV MY KC  +D A +VF  M  R+V +W+ +I  +A +    +A
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKA 253

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA----S 269
           L++F     +S+  PN     SV++A +  G +  G   H +      E+          
Sbjct: 254 LQLFDAMK-RSKIIPNCVTFTSVLSAYSHSGLVEKG---HQIFETMWTEYKITPQIKHYG 309

Query: 270 ALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMIVGAAKY----GLGRFSLDLFNEMIS 324
            +VD++ + G V ++ K    +   P+VV + +++ GA K     GLG        E IS
Sbjct: 310 CMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLL-GACKTHGYKGLG--------EHIS 360

Query: 325 RGI------KPNDVTFVGVLHA 340
           R I       P +  FV  ++A
Sbjct: 361 RKILKLDPSSPENYVFVSNVYA 382


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 296/486 (60%), Gaps = 8/486 (1%)

Query: 124 VWPNEFTFATVIKACS-MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           V P++  F   + AC   LADL  GK IH+ +   G + N VV ++LV+MYGK   +D A
Sbjct: 6   VLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEA 65

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINAC 240
            RVF  +  +++VSWT+++ A+++     EAL++FRE      D  +P++   A ++ AC
Sbjct: 66  TRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQAC 125

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFND-VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           A+L     G++AH  +   G + +D V+   +++MY KCG++  + +VF+ +S    V +
Sbjct: 126 ATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAW 185

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
           T++I G A +G    SL +F  M   G KP+ V+ + VL  CSH+GLV++G      + +
Sbjct: 186 TTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK 245

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           ++G+ P  KHY C++D+LGR+G L+ A  + + +        + W   L+A ++H   + 
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATA--MNWAIFLAACKVHSDTER 303

Query: 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRD 479
              A+ +++E  + V  AYV+LSN YA AGEW+ V  +RS MK  G+ K+PG S +E+  
Sbjct: 304 GKRAAEKVLEL-EPVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNS 362

Query: 480 QTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSE 539
           + + F+AG+    R +E+  LL  L R+M+  GYV   T LV ++V +E +E ++  HSE
Sbjct: 363 RVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVP-DTKLVLLNVSEEQKERLLCFHSE 421

Query: 540 RLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSC 599
           +LA+AFGL+S P G ++RI+KNLR+C DCH   K +S I  R+  +RD  RFHHF++G C
Sbjct: 422 KLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHC 481

Query: 600 SCGDFW 605
           SCGD+W
Sbjct: 482 SCGDYW 487



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS +L++G  SNT     L+N Y +      A ++F  +   ++VS+T+LM+ Y     
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDL 92

Query: 109 PQIALLLFQKM-LGNL--VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ-YNLV 164
            + AL LF++M L  L    P+   FA +++AC+ L+    G+  H  I+  G+   + V
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGV 152

Query: 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224
           +   +++MYGKC ++  A  VFD M  R+ V+WT+II  +A +    E+L MF     Q 
Sbjct: 153 LGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQ-QD 211

Query: 225 RDRPNQHMLASVINACASLGRLVSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283
             +P+   L  V++ C+  G +  G      +    G E  +     ++D+  + G +  
Sbjct: 212 GSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEA 271

Query: 284 SDKVFNRISNPSVVTYTSMIVGAAK 308
           ++ +  R+   +     ++ + A K
Sbjct: 272 AEVMIRRMPFQATAMNWAIFLAACK 296



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLF 85
           +++F   LQ C  L + A     H  I + G+ S+   L   +IN Y +    + A ++F
Sbjct: 115 RSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVF 174

Query: 86  DEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
           D M E + V++T++++GY + G  + +LL+F +M  +   P+  +   V+  CS    + 
Sbjct: 175 DGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVE 234

Query: 146 TGKQIHTHI-ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSIIVA 203
            G      I + FG +        ++D+ G+  D++ A  +   M  +   ++W   + A
Sbjct: 235 QGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAA 294

Query: 204 ---HAQNAQGHEALEMFREFN 221
              H+   +G  A E   E  
Sbjct: 295 CKVHSDTERGKRAAEKVLELE 315


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 201/623 (32%), Positives = 331/623 (53%), Gaps = 68/623 (10%)

Query: 46  LASVHSEILKSGFLSNTFTLNHLINCYV--RLKKTQVARQLFDEMLEPNVVSYTSLMAGY 103
           L  +H  +L+SG   + +    L+ CY          A ++F  +  PNV  +  ++ G 
Sbjct: 49  LTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGC 108

Query: 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNL 163
           +   +   A+  + +M+ +   PN+FT+ T+ KACS+   +  G+QIH H+   G   ++
Sbjct: 109 LENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167

Query: 164 -----------------------------VVC-SSLVDMYGKCN---------------- 177
                                        VVC ++++D Y KC                 
Sbjct: 168 HIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 178 ---------------DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222
                          ++  AR++FD M  R+ +SW+S++  +    +  EALE+F++   
Sbjct: 228 IGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ- 286

Query: 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           +   RP + +L+SV+ AC+++G +  G+  H  + R+  + + V+ +AL+DMYAKCG ++
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLD 346

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
              +VF  +    + T+ +MI G A +G    +L+LF+++    +KPN +T VGVL AC+
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406

Query: 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
           H+G VD+G++   +M   YG+ P+ +HY C+VD+LGR+G   EA  L  S+ + P+    
Sbjct: 407 HAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAA-- 464

Query: 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
           +WG LL A R+HG  D+A      L+E   Q +  YV LSN YA  G +++V  +R  MK
Sbjct: 465 VWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK 524

Query: 463 RTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVF 522
             GI   PG S V++    + F  G+    +  E+   L+ ++ +++  G+    T  V 
Sbjct: 525 DRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH-SPDTSQVL 583

Query: 523 VDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERD 582
            D+++E +E  V  HSE+LA+AFGLI+   G  I I+KNLR+C DCH   KLIS I +R+
Sbjct: 584 FDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDRE 643

Query: 583 FVVRDVNRFHHFRNGSCSCGDFW 605
            +VRD  R+HHF+NG+CSC DFW
Sbjct: 644 IIVRDRVRYHHFKNGTCSCKDFW 666


>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
 gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
          Length = 483

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 177/476 (37%), Positives = 295/476 (61%), Gaps = 4/476 (0%)

Query: 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189
           TF +VI+AC+ L DL  G+ +H  + T G + + V+ ++L++MY +C+  D A  VFD M
Sbjct: 12  TFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDVPDKAIEVFDAM 71

Query: 190 GCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
             ++VV WT++I AH+Q  QG EALE+F+  + +   R ++   + V++ CA+L  L   
Sbjct: 72  HNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGV-RADKVAFSLVLDVCANLAALAQA 130

Query: 250 KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
           ++ H  V  +  E + VV + LV+MY KCG +N + +VF ++++  +V++TS+I   A+ 
Sbjct: 131 RILHATVAGTELEQDMVVKNTLVNMYGKCGKLNEARQVFEKMASKDMVSWTSIIAAYAQQ 190

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G    + +LF+ M   G   + V FV V+  C+H+GL+ +      SM + YG+ P  ++
Sbjct: 191 GSASAAFELFHAMQQAGEAIDTVIFVKVMSGCNHAGLLKDARNWFVSMLQDYGLSPVNEN 250

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
           Y C++D+LGR G+L +   L +++ ++PD   + W + L+A ++H  +   V A+ +L++
Sbjct: 251 YACILDLLGRLGQLQDVEDLLENMTLEPDF--IAWMSFLNACKVHKDMKRGVRAAQRLVQ 308

Query: 430 SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNA 489
            N++ + +YV LS+ +A+ G+++    LR  + R    K PG SW+EI+D+ + F +G+ 
Sbjct: 309 LNRRNSASYVLLSDIHAVCGKFDAAAKLRRRIGRDCGKKVPGLSWIEIKDKVHKFASGSR 368

Query: 490 LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLIS 549
              R  E+ + L+ L   M+E GYV   T +V +DVE+E +E+++  HSE+ A+AFGLIS
Sbjct: 369 THPRNDEIFAELQRLGVLMREAGYV-PDTEVVLMDVEEEEKEQVLCYHSEKQAMAFGLIS 427

Query: 550 IPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            P G  +R++KNLR+C DCH   K IS I  R   VRD NRFH F++G CSC D+W
Sbjct: 428 TPSGTPLRVVKNLRVCTDCHTATKFISKITGRQITVRDANRFHEFKDGFCSCKDYW 483



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 165/373 (44%), Gaps = 45/373 (12%)

Query: 30  KAHFIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++ F   ++ C  L  L     +H  ++  G   +T    +LIN Y R      A ++FD
Sbjct: 10  RSTFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDVPDKAIEVFD 69

Query: 87  EMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
            M   +VV +T+++A +   GQ   AL LF++M    V  ++  F+ V+  C+ LA L  
Sbjct: 70  AMHNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGVRADKVAFSLVLDVCANLAALAQ 129

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ 206
            + +H  +     + ++VV ++LV+MYGKC  ++ AR+VF+ M  +++VSWTSII A+AQ
Sbjct: 130 ARILHATVAGTELEQDMVVKNTLVNMYGKCGKLNEARQVFEKMASKDMVSWTSIIAAYAQ 189

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
                 A E+F     Q+ +  +  +   V++ C   G L   +                
Sbjct: 190 QGSASAAFELFHAMQ-QAGEAIDTVIFVKVMSGCNHAGLLKDAR---------------- 232

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326
             +  V M    G             +P    Y  ++    + G  +   DL   M    
Sbjct: 233 --NWFVSMLQDYG------------LSPVNENYACILDLLGRLGQLQDVEDLLENMT--- 275

Query: 327 IKPNDVTFVGVLHACSHSGLVDEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383
           ++P+ + ++  L+AC     +  G+   Q L  + R+     ++  Y  + D+    G+ 
Sbjct: 276 LEPDFIAWMSFLNACKVHKDMKRGVRAAQRLVQLNRR-----NSASYVLLSDIHAVCGKF 330

Query: 384 DEAYKLAKSIQVD 396
           D A KL + I  D
Sbjct: 331 DAAAKLRRRIGRD 343



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           R ++    SVI ACA L  L  G++ H  ++  GCE + V+ + L++MY++C   + + +
Sbjct: 7   RGDRSTFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDVPDKAIE 66

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SG 345
           VF+ + N SVV +T+MI   ++ G G  +L+LF  M   G++ + V F  VL  C++ + 
Sbjct: 67  VFDAMHNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGVRADKVAFSLVLDVCANLAA 126

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L    I H  +      +  D      +V+M G+ G+L+EA ++ + +        + W 
Sbjct: 127 LAQARILH--ATVAGTELEQDMVVKNTLVNMYGKCGKLNEARQVFEKM---ASKDMVSWT 181

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449
           ++++A    G    A E    L  + QQ   A  T+     ++G
Sbjct: 182 SIIAAYAQQGSASAAFE----LFHAMQQAGEAIDTVIFVKVMSG 221


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 323/588 (54%), Gaps = 18/588 (3%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNH-------LINCYVRLKKTQVA 81
           T   +   L  C   IS  S+H  I     + N  +L H       LI  +   ++  +A
Sbjct: 137 TPEAYTDLLHAC---ISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLA 193

Query: 82  RQLFDEMLEPNVVS---YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138
           R++FD++ + ++++   + ++  GY   G P+ AL+++  ML + + P  F+ +  +KAC
Sbjct: 194 RKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKAC 253

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
             L DL  G+ IH  I     + + VV + L+ +Y +    D AR+VFD M  RNVV+W 
Sbjct: 254 VDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWN 313

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           S+I   ++  + HE   +FR+   +     +   L +++ AC+ +  L++GK  H  +++
Sbjct: 314 SLISVLSKKVRVHEMFNLFRKMQEEMIGF-SWATLTTILPACSRVAALLTGKEIHAQILK 372

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
           S  + +  + ++L+DMY KCG V YS +VF+ +    + ++  M+   A  G     ++L
Sbjct: 373 SKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINL 432

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F  MI  G+ P+ +TFV +L  CS +GL + G+   + M  ++ + P  +HY C+VD+LG
Sbjct: 433 FEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILG 492

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R G++ EA K+ +++   P     +WG+LL++ RLHG V +   A+ +L          Y
Sbjct: 493 RAGKIKEAVKVIETMPFKPSAS--IWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNY 550

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNAL-FERGSEV 497
           V +SN YA A  W+NV  +R  MK+ G+ KE GCSWV+++D+   F AG    F    E 
Sbjct: 551 VMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEY 610

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             +  EL+  +++ GY    T +V  DV++E +   V  HSERLA  + LI   +G+ IR
Sbjct: 611 KKVWTELQEAIEKSGY-SPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIR 669

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I KNLR+C DCH   K++S +  R  V+RD  RFHHF +G CSC D+W
Sbjct: 670 ITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 717


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 196/578 (33%), Positives = 316/578 (54%), Gaps = 13/578 (2%)

Query: 33   FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN 92
            F   L  C +L  L  VH+ ++      N    N L+  Y +      A+++   M E +
Sbjct: 556  FTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERD 615

Query: 93   VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD--LITGKQI 150
            VV++ +L+ G+ +   P   +  F  M    +  N  T   ++  C M  D  L  G  I
Sbjct: 616  VVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTC-MSPDYLLKHGMPI 674

Query: 151  HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
            H HI   GF+ +  V SSL+ MY +C D++ +  +FD++  +N  +W +I  A+A    G
Sbjct: 675  HAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPG 734

Query: 211  HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
             EAL+          D  +Q   +  +    +L  L  G+  H  +++ G E ++ V +A
Sbjct: 735  EEALKFIARMRNDGVDL-DQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNA 793

Query: 271  LVDMYAKCGSVNYSDKVFNRISNPSVVTYTS---MIVGAAKYGLGRFSLDLFNEMISRGI 327
             +DMY KCG +   D VF  +  P + +  S   +I   A++G  R + + F+EM+  G+
Sbjct: 794  TMDMYGKCGEI---DDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGL 850

Query: 328  KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
            KP+ VTFV +L ACSH GLVDEG+ +  SM  ++G+    +H  C++D+LGR+GRL EA 
Sbjct: 851  KPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAE 910

Query: 388  KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
                 + V P+    +W +LL+A ++HG +++  +A+++L E N    +AYV  SN  A 
Sbjct: 911  GFIDKMPVPPN--EFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCAS 968

Query: 448  AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
               W +V ++R +M+   + K+P CSW++++++   F  G+    + +++ + L EL + 
Sbjct: 969  TQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKM 1028

Query: 508  MKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRD 567
             +E G++   T     D ++E +E  +  HSER+ALAFGLI+  +G  +RI KNLR+C D
Sbjct: 1029 TREEGHMP-DTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGD 1087

Query: 568  CHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            CH VFKL+S IV R  VVRD  RFHHF  G CSC D+W
Sbjct: 1088 CHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 202/415 (48%), Gaps = 13/415 (3%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77
           + R + ++   T +  +      +HL     +H  I KSG  SN    N L++ Y +   
Sbjct: 443 MRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGS 502

Query: 78  TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137
           ++ A  +F  M   +++S+ S+MA ++  G+   A+LL  +ML      N  TF T + A
Sbjct: 503 SEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSA 562

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C  L  L   K +H  +  F   +NL++ ++LV MYGK   +D A++V  +M  R+VV+W
Sbjct: 563 CYNLEKL---KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTW 619

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVS-GKVAHG 254
            ++I  HA +   +  ++    FN   R+    N   + +++  C S   L+  G   H 
Sbjct: 620 NALIGGHADDKDPNATIQ---AFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHA 676

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            +V +G E +  V S+L+ MYA+CG +N S  +F+ ++N +  T+ ++    A YG G  
Sbjct: 677 HIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEE 736

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
           +L     M + G+  +  +F   L    +  ++DEG Q L S   K G   D       +
Sbjct: 737 ALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEG-QQLHSWIIKLGFELDEYVLNATM 795

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
           DM G+ G +D+ +++    ++        W  L+SA   HG    A EA +++++
Sbjct: 796 DMYGKCGEIDDVFRILPIPKIRSKRS---WNILISALARHGFFRQATEAFHEMLD 847



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 198/398 (49%), Gaps = 15/398 (3%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K G +SN F    L++ Y        A +LF+E+ EPN+VS+TSLM  Y + G 
Sbjct: 271 IHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGH 330

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV-VCS 167
            +  L +++ +  N +     T ATVI+ C M  D   G QI   +   G   + V V +
Sbjct: 331 TKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVAN 390

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227
           SL+ M+G  + V+ A RVF+ M  R+ +SW SII A A N +  E+L     F +  R  
Sbjct: 391 SLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLG---HFFWMRRTH 447

Query: 228 PNQH--MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           P      +++++ AC S   L  G+  HG++ +SG E N  V ++L+ MYA+ GS   ++
Sbjct: 448 PKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAE 507

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            VF+ +    ++++ SM+    + G    ++ L  EM+      N VTF   L AC +  
Sbjct: 508 LVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNL- 566

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
              E ++ + +    + +  +      +V M G+ G +DEA K+ K   + P+   + W 
Sbjct: 567 ---EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCK---IMPERDVVTWN 620

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
            L+         +  ++A N L+     ++N Y+T+ N
Sbjct: 621 ALIGGHADDKDPNATIQAFN-LMRREGLLSN-YITIVN 656



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 193/397 (48%), Gaps = 9/397 (2%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           ++H+  +K     NTF  N L+N Y +    + A+ +FD+M + N  S+ ++++G++ +G
Sbjct: 168 ALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVG 227

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG-KQIHTHIETFGFQYNLVVC 166
               A+  F  M  N V P+ +  A+++ AC     +  G +QIH ++   G   N+ V 
Sbjct: 228 WYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVG 287

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD 226
           +SL+  YG    V  A ++F+ +   N+VSWTS++V +A N    E L ++R   +    
Sbjct: 288 TSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLI 347

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDMYAKCGSVNYSD 285
                M A+VI  C   G    G    G V++SG + + V VA++L+ M+    SV  + 
Sbjct: 348 CTGNTM-ATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEAS 406

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VFN +     +++ S+I  +A  G    SL  F  M     K + +T   +L AC  + 
Sbjct: 407 RVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQ 466

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            +  G + L  +  K G+  +      ++ M  + G  ++A  +  ++   P    + W 
Sbjct: 467 HLKWG-RGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTM---PARDLISWN 522

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           +++++    G+   A+    +++++ +  A  YVT +
Sbjct: 523 SMMASHVEDGKYSHAILLLVEMLKTRK--AMNYVTFT 557



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 138/284 (48%), Gaps = 5/284 (1%)

Query: 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV 195
           K  S +++   GK +H        Q N    ++LV+MY K   +  A+ VFD M  RN  
Sbjct: 155 KGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDA 214

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG-KVAHG 254
           SW ++I    +    H+A++ F    +++   P+ +++AS++ AC   G +  G +  HG
Sbjct: 215 SWNNMISGFVRVGWYHKAMQFFCHM-FENGVTPSSYVIASMVTACDRSGCMTEGARQIHG 273

Query: 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            VV+ G   N  V ++L+  Y   GSV+ ++K+F  I  P++V++TS++V  A  G  + 
Sbjct: 274 YVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKE 333

Query: 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
            L+++  +   G+     T   V+  C   G    G Q L  + +             ++
Sbjct: 334 VLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLI 393

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
            M G    ++EA ++  ++Q   +   + W ++++AS  +GR +
Sbjct: 394 SMFGNYDSVEEASRVFNNMQ---ERDTISWNSIITASAHNGRFE 434


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 305/527 (57%), Gaps = 8/527 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQP-QIALLLFQKMLGN-LVWPNEFTFATVIKAC 138
           AR++F ++  P + +Y S++ G +    P +  + LF+ M+G     PN FT A V+KAC
Sbjct: 43  ARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKAC 102

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198
           S++  L  GKQIH  I   GF  +  V SSLV+ Y KC ++  AR+VFD +  RN+V W+
Sbjct: 103 SIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWS 162

Query: 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258
           +++  +A+    +EAL MFRE      + P++  L  V++ACA +G L  GK  H  + +
Sbjct: 163 AMVSGYARLGMINEALIMFREMQVVGIE-PDEVSLVGVLSACAMVGALDIGKWVHAYIKK 221

Query: 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
                +  + +AL++MYAKCG +  + ++F+ +       ++SMIVG A +GL   +L++
Sbjct: 222 RMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNV 281

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F+ M     KPN VTF+G+L AC+H GLV +G ++  SM  + GI P  +HY C+VD+L 
Sbjct: 282 FSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLC 340

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438
           R G +DEAY  A  I   P   P++W TLL A   +  +  A   + +L+E     A  Y
Sbjct: 341 RGGLIDEAYDFALII---PTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENY 397

Query: 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           + L+N YA   + E V  +R  MK  GI   PGC+ +E+    + F  G+       E+ 
Sbjct: 398 IILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIK 457

Query: 499 SLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRI 558
             LR++  K+   GY      +V   V DE +E ++  HSERLA+A+GL+      TIRI
Sbjct: 458 KTLRDVALKILISGY-KPFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRI 516

Query: 559 MKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +KNLR+C DCH+V K+IS I +R+ +VRD  RFH F NG+CSC D+W
Sbjct: 517 VKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 154/275 (56%), Gaps = 4/275 (1%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  +++L     +H++IL+SGF S+ +  + L+N Y + ++  +AR++FDE+ E N+
Sbjct: 99  LKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNL 158

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           V ++++++GY  +G    AL++F++M    + P+E +   V+ AC+M+  L  GK +H +
Sbjct: 159 VCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAY 218

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I+      +L + ++L++MY KC  ++ AR +FD M  ++  +W+S+IV  A +    +A
Sbjct: 219 IKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDA 278

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L +F     +++ +PN      +++ACA  G +  GK     ++  G E +      +VD
Sbjct: 279 LNVFSRME-EAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVD 337

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK 308
           +  + G ++ +      I  P  V + +++V   K
Sbjct: 338 LLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTK 372



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 68  LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127
           LIN Y +    + AR++FDEM   +  +++S++ G    G  + AL +F +M      PN
Sbjct: 234 LINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPN 293

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD 187
             TF  ++ AC+    +  GK+  + +   G + ++     +VD+  +   +D A     
Sbjct: 294 HVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFAL 353

Query: 188 LMGCRNVVSWTSIIVAHAQNAQGHEA---------LEMFREFNY 222
           ++   + V W +++VA+ +N    +A         LE ++  NY
Sbjct: 354 IIPTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENY 397



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 44/223 (19%)

Query: 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL-GRFSLDLFNEMISRGIK-PNDVTFVG 336
           G+ +Y+ K+F++I NP +  Y S+I G     +  +  + LF +M+ +G   PN  T   
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97

Query: 337 VLHACSHSGLVDEGIQ------------------HLDSMYRKYGIIPDAKH--------- 369
           VL ACS    ++EG Q                   L + Y K   I  A+          
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157

Query: 370 ---YTCVVDMLGRTGRLDEAYKLAKSIQV---DPDGGPLLWGTLLSASRLHGRVDIA--V 421
              ++ +V    R G ++EA  + + +QV   +PD   L+   +LSA  + G +DI   V
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLV--GVLSACAMVGALDIGKWV 215

Query: 422 EA--SNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462
            A    ++I  + ++  A   L N YA  G  E    +  EM+
Sbjct: 216 HAYIKKRMIHVDLELNTA---LINMYAKCGCIEKAREIFDEMR 255


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 197/607 (32%), Positives = 332/607 (54%), Gaps = 48/607 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   L  C  L SL     +H++++++    + +  + L+  Y +    + A+ +F+ + 
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 332

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N V++T L++G++  G    ++ LF +M   L+  ++F  AT+I  C    DL  G+Q
Sbjct: 333 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 392

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ--- 206
           +H+     G    +VV +SL+ MY KC+++  A  +F  M  +++VSWTS+I A++Q   
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 452

Query: 207 ----------------------------NAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
                                       +    + L M++    +   RP+     ++  
Sbjct: 453 VAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFK 512

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA LG    G    G  V+ G   +  VA+A++ MY+KCG +  + KVF+ ++   +V+
Sbjct: 513 GCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 572

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G+G+ ++++F++++ RG KP+ +++V VL  CSHSGLV EG  + D M 
Sbjct: 573 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMK 632

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R + I P  +H++C+VD+LGR G L EA  L   + + P     +WG LLSA ++HG  +
Sbjct: 633 RAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAE--VWGALLSACKIHGNNE 690

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  + E +   + +Y+ ++  YA AG+ ++   +R  M+  GI K PG SW+E+ 
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVD 750

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F A +    +   +   L EL  K+   GYV            D  R EI   HS
Sbjct: 751 NKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVR----------TDSTRSEI--HHS 798

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFGL+++P  + I IMKNLR+C DCH V KLIS +  R+FV+RD  RFHHF  GS
Sbjct: 799 EKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGS 858

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 859 CSCGDYW 865



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 184/410 (44%), Gaps = 39/410 (9%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM- 119
           N  T N ++N Y +L +   A +LF  M   +V S+ +LM+GY    Q  ++L  F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                WPN FT A  +K+C  L       Q+   ++ F  Q +  V ++LVDM+ +C  V
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 180 DGARR-------------------------------VFDLMGCRNVVSWTSIIVAHAQNA 208
           D A R                               +FD M  R+VVSW  ++ A +Q+ 
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 209 QGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
           +  EAL+M    + QS+  R +     S + ACA L  L  GK  H  V+R+    +  V
Sbjct: 250 RVREALDMV--VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYV 307

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           ASALV++YAK G    +  VFN + + + V +T +I G  +YG    S++LFN+M +  +
Sbjct: 308 ASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELM 367

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
             +      ++  C     +  G Q L S+  K G I        ++ M  +   L  A 
Sbjct: 368 TLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            + + +    +   + W ++++A    G V  A E  + + E N    NA
Sbjct: 427 AIFRFMN---EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNA 473



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 34/190 (17%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK-VFNRI 291
            A  + +C + G L   +  HG +V  G      + + L+  Y  CG+++ + + +   I
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK----------------------- 328
           ++P+V+T+  M+ G AK G    +++LF  M +R +                        
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 329 ---------PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
                    PN  T    + +C   G     +Q L +M +K+    D++    +VDM  R
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVR 185

Query: 380 TGRLDEAYKL 389
            G +D A +L
Sbjct: 186 CGAVDLASRL 195


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 208/544 (38%), Positives = 313/544 (57%), Gaps = 28/544 (5%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +      ARQ+FDEM   NVVS+T+L++GY   G+      LF  ML +  +PNEF F
Sbjct: 2   YAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVD-CYPNEFAF 60

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK-CNDV-----DGARRV 185
           A+VI +C    D + GKQ+H      G   ++ V ++L+  Y K C D        A RV
Sbjct: 61  ASVIISC----DYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRV 116

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           F+ M  RN+VSW S+I A        EAL +FR+  Y+    P+    + V+ ACA    
Sbjct: 117 FESMEFRNLVSWNSMIAAE------EEALLLFRQL-YREGLAPDWCTFSIVLKACAGFVT 169

Query: 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVG 305
                  +  VV++G E + V+A+ L+  YA+CGS+++S +VF+++ +  VV++ SMI  
Sbjct: 170 ERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKA 229

Query: 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP 365
            A +G  + +L LF+EM    ++P+  T V +L ACSH+GLV+EGI   DSM   +G+ P
Sbjct: 230 YALHGQAKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSP 286

Query: 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425
              HY C+VD+LGR G L EA +L   + + PD   ++W  LLS+ R +G   +A  A++
Sbjct: 287 QLDHYACMVDILGRAGLLLEAGELISRMPMKPD--SVVWSALLSSCRKYGETQLAKLAAD 344

Query: 426 QLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFY 485
           +L E     +  YV +SN Y   G +     +R EM  + + KEPG SW+EI ++ + F 
Sbjct: 345 KLKELEPGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFA 404

Query: 486 AGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAF 545
           +G     +   + + L  L  ++K  GYV  +T L   D+E+E ++E +  HSE+LAL F
Sbjct: 405 SGGRRHPQREAIYAKLYSLIGQLKGVGYVP-ETSLALQDIEEEHKQEQLYHHSEKLALVF 463

Query: 546 GLIS----IPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601
            L+S       G  IRI+KN+R+C DCH+  KL SD+++++ VVRD NRFHHF+N  CSC
Sbjct: 464 ALMSEGSLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSC 523

Query: 602 GDFW 605
            D+W
Sbjct: 524 NDYW 527



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 28/259 (10%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MY KC D+D AR+VFD MG RNVVSWT++I  +AQ+ + +E   +F +        PN+ 
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVDC--YPNEF 58

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY------SD 285
             ASVI +C      V GK  H + ++ G   +  V +AL+  Y+K    N+      + 
Sbjct: 59  AFASVIISC----DYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEAC 114

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +VF  +   ++V++ SMI    +      +L LF ++   G+ P+  TF  VL AC  +G
Sbjct: 115 RVFESMEFRNLVSWNSMIAAEEE------ALLLFRQLYREGLAPDWCTFSIVLKAC--AG 166

Query: 346 LVDEGIQHLDSMYR---KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPL 402
            V E  +H  ++Y    K G   D      ++    R G +  + ++   ++       +
Sbjct: 167 FVTE--RHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMR---SRDVV 221

Query: 403 LWGTLLSASRLHGRVDIAV 421
            W +++ A  LHG+   A+
Sbjct: 222 SWNSMIKAYALHGQAKEAL 240



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +V+S+++K+GF  +    N LI+ Y R      ++Q+FD+M   +VVS+ S++  Y   G
Sbjct: 175 AVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHG 234

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE-TFGFQYNLVVC 166
           Q + AL LF +M    V P+  T   ++ ACS    +  G  I   +    G    L   
Sbjct: 235 QAKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHY 291

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCR-NVVSWTSII 201
           + +VD+ G+   +  A  +   M  + + V W++++
Sbjct: 292 ACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALL 327


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 334/599 (55%), Gaps = 17/599 (2%)

Query: 18  LTRQNKRSSCHTKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNTFTL-NHLINCYV 73
           L R +       K  ++  L+ C +L +L+    +H+ +L  G L     + N +I  Y 
Sbjct: 349 LRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYG 408

Query: 74  RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133
           +  +T+ A  +F+ M   + VS+ +++   +   + Q AL LF  M    +  NEFT  +
Sbjct: 409 KCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLS 468

Query: 134 VIKACSMLADLITGKQIHTHIETFGFQYN-LVVCSSLVDMYGKCNDVDGARRVFDLMGCR 192
           +++AC  L DL   +QIH      GF  N   V +S+V+MY +C  +  A++ FD +  +
Sbjct: 469 LLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEK 528

Query: 193 NVVSWTSIIVAHAQ--NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            +V+W+ I+ A+AQ  +  G  A + F+E   +   +P +    S ++ACA++  L  G+
Sbjct: 529 GLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGI-KPGEVTFVSALDACAAMATLEHGR 587

Query: 251 VAHGVVVRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY 309
             H     SG  E + V+ + +++MY KCGS + +  VF+++    ++++ S+IV  A  
Sbjct: 588 SMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHN 647

Query: 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369
           G    +L    EM+ +G  P+  T V +L+  SH+GL++ G++H  S  + +G+ P +  
Sbjct: 648 GHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQ 707

Query: 370 YTCVVDMLGRTGRLDEAYKL---AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426
             C+VD+L R G LD A +L   + + Q D     + W TLL+A + +G     +  + +
Sbjct: 708 LKCLVDLLARKGFLDAAEELILASPACQADT----IAWMTLLAACKSYGDPQRGIRCAER 763

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYA 486
           + E   Q + ++V L+N YA  G W +   +R  M+R  + KEPGCSW+E+    + F +
Sbjct: 764 VFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFIS 823

Query: 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFG 546
           G +   +  E+   L +L  +M+E GYV   T +V  DVE+  +EEI+  HSERLA+ FG
Sbjct: 824 GESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVH-DVEEGDKEEILSRHSERLAIVFG 882

Query: 547 LISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           L+S   G TIR++KNLR+C DCH   K+IS +V R+ VVRD +RFHHF++G CSCGDFW
Sbjct: 883 LMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 171/318 (53%), Gaps = 2/318 (0%)

Query: 72  YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131
           Y +  +   A  +FD +   NV S+T +MA Y   G  + AL LF +M      P++  F
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 132 ATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC 191
              + AC+   +L  G+QIH+ +   G   N+++ +SLV+MYGKC DV  A +VFD M  
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251
           R+VVSWT+++  +AQN    +ALE     + +   +PNQ    ++++ CA L  L  G+ 
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGV-KPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL 311
            H  ++  G E + ++ +ALV MY  CGS +    VF+R+   SV+ +T+MI G ++ G 
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
               L +F +M   G+K N+VT++ ++  C +   V EG + +D+   +          T
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEG-EMIDARILESPFCSSTLLAT 299

Query: 372 CVVDMLGRTGRLDEAYKL 389
            ++ + G+ G LD A  L
Sbjct: 300 SLISLYGQCGILDRAKGL 317



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 208/426 (48%), Gaps = 9/426 (2%)

Query: 1   MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSG 57
           M  + ++N  +  A    TR     +   K  F+  L  C     L     +HS ++ SG
Sbjct: 29  MMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVGSG 88

Query: 58  FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
             SN    N L+N Y + +    A ++FD ML  +VVS+T+++A Y   G    AL    
Sbjct: 89  LTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLS 148

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           +M    V PN+ TF T++  C+ L  L  G++IH  I   G + + ++ ++LV MYG C 
Sbjct: 149 RMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCG 208

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
             D  + VF  MG  +V+ WT++I   +QN Q  E L +FR+ + +   + N+    S++
Sbjct: 209 SFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGV-KANEVTYMSMV 267

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
             C +L  +  G++    ++ S    + ++A++L+ +Y +CG ++ +  +   +    VV
Sbjct: 268 EVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVV 327

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
            + +M+   A+ G    ++ L   M   G   N VT++ VL AC++   + +G + + + 
Sbjct: 328 AWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQG-REIHAR 386

Query: 358 YRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
               G++  +      V+ M G+ G+ + A  + +++   P    + W  +++AS  + +
Sbjct: 387 VLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAM---PRKDDVSWNAVINASVGNSK 443

Query: 417 VDIAVE 422
              A+E
Sbjct: 444 FQDALE 449



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 172 MYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231
           MYGKC  V  A  VFD +  +NV SWT ++ A++QN    EALE+F    ++   RP++ 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEG-TRPDKV 59

Query: 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291
           +    ++ACA+ G L  G+  H  VV SG   N +++++LV+MY KC  V  ++KVF+ +
Sbjct: 60  VFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351
               VV++T+M+   A+ G    +L+  + M + G+KPN VTFV ++  C+   L+D G 
Sbjct: 120 LLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLG- 178

Query: 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411
           + +       G+ PD      +V M G  G  D+   +   +        LLW T+++  
Sbjct: 179 RKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRM---GQSSVLLWTTMIAGC 235

Query: 412 RLHGRVD 418
             +G+ +
Sbjct: 236 SQNGQYE 242


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 193/557 (34%), Positives = 314/557 (56%), Gaps = 25/557 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++ +G+    +    L+  Y R    + AR + D M E NVVS+T++++GY    +
Sbjct: 57  VHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNER 116

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P  A  LF  ML                     A +   KQ+H       F+ ++ V SS
Sbjct: 117 PDQAWELFIMMLR--------------------AGIHQVKQVHAFAVKTNFELHMFVGSS 156

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+DMY K  ++  ARRVFD++  R+VVS+T+I+  + Q     EAL++FR   Y    + 
Sbjct: 157 LLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLL-YNEGMQC 215

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           NQ    +++NA + L  +  GK  HG+++R    F   + ++L+DMY+KCG + YS +VF
Sbjct: 216 NQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVF 275

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           + +   SVV++ +M++G  ++GL    + LF  M    +KP+ VT + VL   SH GLVD
Sbjct: 276 DSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVLSGYSHGGLVD 334

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           EG+   D + ++   + + +HY CV+D+LGR+G+L +A  L + +   P     +WG+LL
Sbjct: 335 EGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRA--IWGSLL 392

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
            A R+H  V +    + +L++   + A  YV LSN YA AG W++V  +R  M +  + K
Sbjct: 393 GACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTVIK 452

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           EPG SW+ +    + F++      R  ++ + ++E+   +K  G+V      V  DV+DE
Sbjct: 453 EPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVP-DLSCVLHDVDDE 511

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
            +E ++  HSE+LA+ FGL+S P  +TI++MKNLR+C DCH+  K +S +  R+  +RD 
Sbjct: 512 QKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDK 571

Query: 589 NRFHHFRNGSCSCGDFW 605
           NRFH    G+C+CGD+W
Sbjct: 572 NRFHLITEGACTCGDYW 588



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 153/299 (51%), Gaps = 7/299 (2%)

Query: 7   RNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLN 66
           RN++   A  S   QN+R        FI  L+   H +    VH+  +K+ F  + F  +
Sbjct: 99  RNVVSWTAMISGYSQNERPD-QAWELFIMMLRAGIHQVK--QVHAFAVKTNFELHMFVGS 155

Query: 67  HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126
            L++ Y + +  Q AR++FD +   +VVSYT++++GY  +G  + AL LF+ +    +  
Sbjct: 156 SLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQC 215

Query: 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186
           N+ TF  ++ A S L+ +  GKQ+H  I      + + + +SL+DMY KC  +  +RRVF
Sbjct: 216 NQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVF 275

Query: 187 DLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246
           D M  R+VVSW ++++ + ++   HE +++FR    +   +P+   L +V++  +  G +
Sbjct: 276 DSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEV--KPDSVTLLAVLSGYSHGGLV 333

Query: 247 VSG-KVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-NPSVVTYTSMI 303
             G  +   +V       N      ++D+  + G +  +  +  ++   P+   + S++
Sbjct: 334 DEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWGSLL 392



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 27/286 (9%)

Query: 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190
           +   I  C     L  G+Q+H  +   G++  L + + LV MY +C  ++ AR V D M 
Sbjct: 38  YDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMP 97

Query: 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK 250
            RNVVSWT++I  ++QN +  +A E+F              ML + I+           K
Sbjct: 98  ERNVVSWTAMISGYSQNERPDQAWELF------------IMMLRAGIHQV---------K 136

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
             H   V++  E +  V S+L+DMYAK  ++  + +VF+ +    VV+YT+++ G  + G
Sbjct: 137 QVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLG 196

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYRKYGIIPDAKH 369
           L   +LDLF  + + G++ N VTF  +L+A S    +D G Q H   + R+       ++
Sbjct: 197 LDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQN 256

Query: 370 YTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
              ++DM  + G+L  + ++  S+   P+   + W  +L     HG
Sbjct: 257 --SLIDMYSKCGKLLYSRRVFDSM---PERSVVSWNAMLMGYGRHG 297



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           H     I  C     L  G+  H  +V +G      +A+ LV MYA+CG++  +  V + 
Sbjct: 36  HDYDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDG 95

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPNDVTFVGV-----LHACSHS 344
           +   +VV++T+MI G ++      + +LF  M+  GI +   V    V     LH    S
Sbjct: 96  MPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKTNFELHMFVGS 155

Query: 345 GLVD--EGIQHLDSMYRKYGIIP--DAKHYTCVVDMLGRTGRLDEAYKL 389
            L+D     +++    R + ++P  D   YT ++    + G  +EA  L
Sbjct: 156 SLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDL 204


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 313/555 (56%), Gaps = 7/555 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +GF  +    N L   Y+     + A +LF  M   ++VS+T++++GY     
Sbjct: 319 IHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFL 378

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+ A+  ++ M  + V P+E T A V+ AC+ L DL TG ++H           ++V ++
Sbjct: 379 PEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L++MY KC  +D A  +F  +  +NV+SWTSII     N +  EAL  FR+     +  P
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMTLQ--P 496

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L + + ACA +G L+ GK  H  V+R+G   +D + +AL+DMY +CG +N +   F
Sbjct: 497 NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQF 556

Query: 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348
           N      V ++  ++ G ++ G G   ++LF+ M+   ++P+++TF+ +L  C  S +V 
Sbjct: 557 NS-QKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVR 615

Query: 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408
           +G+ +   M  +YG+ P+ KHY CVVD+LGR G L EA+K  + + V PD  P +WG LL
Sbjct: 616 QGLMYFSKM-EEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD--PAVWGALL 672

Query: 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468
           +A R+H  +D+   ++ ++ E ++     Y+ L N YA  G+W  V  +R  MK  G+  
Sbjct: 673 NACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTV 732

Query: 469 EPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDE 528
           + GCSWVE++ + +AF + +    +  E+ ++L     KM E G          +D  + 
Sbjct: 733 DAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMSEVGLTTSSESSS-MDETEI 791

Query: 529 AREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDV 588
           +R+EI   HSER A+AFGLI+   G+ I + KNL MC  CHD  K IS  V R+  VRD 
Sbjct: 792 SRDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESCHDTVKFISKTVRREISVRDS 851

Query: 589 NRFHHFRNGSCSCGD 603
             FHHF++G CSCGD
Sbjct: 852 EHFHHFKDGECSCGD 866



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 187/352 (53%), Gaps = 6/352 (1%)

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLG-NLV 124
           N  +  +VR      A  +F +M E N+ S+  L+ GY   G    A+ L+ +ML    V
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGV 192

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
            P+ +TF  V++ C  + DL  G+++H H+  +G++ ++ V ++L+ MY KC DV  AR 
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +FD M  R+++SW ++I  + +N  GHE L++F      S D P+   L SVI+AC  LG
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVD-PDLMTLTSVISACELLG 311

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
               G+  H  V+ +G   +  V ++L  MY   GS   ++K+F+R+    +V++T+MI 
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMIS 371

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
           G     L   ++D +  M    +KP+++T   VL AC+  G +D G++ L  +  K  +I
Sbjct: 372 GYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVE-LHKLAIKARLI 430

Query: 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
                   +++M  +   +D+A  +  +I   P    + W ++++  RL+ R
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNI---PRKNVISWTSIIAGLRLNNR 479



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 208/397 (52%), Gaps = 10/397 (2%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C  +  LA    VH  +++ G+  +   +N LI  YV+    + AR LFD M   ++
Sbjct: 203 LRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDI 262

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+ ++++GY   G     L LF  M G  V P+  T  +VI AC +L D   G+ IH +
Sbjct: 263 ISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           + T GF  ++ VC+SL  MY        A ++F  M C+++VSWT++I  +  N    +A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKA 382

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           ++ +R  + Q   +P++  +A+V++ACA+LG L +G   H + +++      +VA+ L++
Sbjct: 383 IDTYRMMD-QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLIN 441

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KC  ++ +  +F+ I   +V+++TS+I G         +L  F +M    ++PN +T
Sbjct: 442 MYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPNAIT 500

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
               L AC+  G +  G + + +   + G+  D      ++DM  R GR++ A+    S 
Sbjct: 501 LTAALAACARIGALMCG-KEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQ 559

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           + D       W  LL+     G+  + VE  ++++++
Sbjct: 560 KKDVSS----WNILLTGYSERGQGSVVVELFDRMVKA 592


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 202/591 (34%), Positives = 329/591 (55%), Gaps = 39/591 (6%)

Query: 49   VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
            V   I++ GF  +    N LI+ +      + A  +FD M E +++S+ ++++ Y + G 
Sbjct: 498  VLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL 557

Query: 109  PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
             + +L  F  M       N  T ++++  CS + +L  G+ IH  +   G   N+ +C++
Sbjct: 558  CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNT 617

Query: 169  LVDMYGKCNDVDGARRVFDLMGCRNVVSWTS----------------------------- 199
            L+ +Y +    + A  VF  M  R+++SW S                             
Sbjct: 618  LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDR 677

Query: 200  -----IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
                 +I  HA+N + +EA++ ++    + +  P  ++    + A A+L  L  G+  HG
Sbjct: 678  VTWNALIGGHAENEEPNEAVKAYKLI--REKGIPANYITMVSLAATANLAVLEEGQQLHG 735

Query: 255  VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314
            +V++ G E +  V +A +DMY KCG ++   K+  +  N S +++  +I   A++G  + 
Sbjct: 736  LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQK 795

Query: 315  SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
            + + F+EM+  G KP+ VTFV +L AC+H GLVDEG+ + DSM R++G+ P  +H  C++
Sbjct: 796  ARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCII 855

Query: 375  DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
            D+LGR+GRL  A    K + V P+   L W +LL+A R+HG +++A + +  L+E +   
Sbjct: 856  DLLGRSGRLSHAEGFIKEMPVPPN--DLAWRSLLAACRIHGNLELARKTAEHLLELDPSD 913

Query: 435  ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERG 494
             +AYV  SN  A +G+WE+V +LR EM    I K+P CSWV+++D+ ++F  G     + 
Sbjct: 914  DSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQA 973

Query: 495  SEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGI 554
            S + + L EL +  KE GYV   T     D+++E +E  +  HSERLALAFGLI+ P+  
Sbjct: 974  SRISAKLGELMKMTKEAGYV-PDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESS 1032

Query: 555  TIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            T+RI KNLR+C DCH V+K +S IV R  V+RD  RFHHF  G CSCGD+W
Sbjct: 1033 TLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 205/415 (49%), Gaps = 40/415 (9%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  ++K+G L + +    L++ Y  +     A++LF+EM + NVVS+TSLM GY + G 
Sbjct: 397 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 456

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P   L ++Q+M    V  N+ TFATV  +C +L D + G Q+  HI  +GF+ ++ V +S
Sbjct: 457 PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANS 516

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L+ M+   + V+ A  VFD M   +++SW ++I A+A +    E+L  F    +   +  
Sbjct: 517 LISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL-HNET 575

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L+S+++ C+S+  L  G+  HG+VV+ G + N  + + L+ +Y++ G    ++ VF
Sbjct: 576 NSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVF 635

Query: 289 NRISNPSVVTYTSMIVGAAKYG--------------LGRFSLDLFNEMIS---------- 324
             ++   ++++ SM+    + G              +G+     +N +I           
Sbjct: 636 QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNE 695

Query: 325 ----------RGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374
                     +GI  N +T V  L A ++  +++EG Q L  +  K G   D       +
Sbjct: 696 AVKAYKLIREKGIPANYITMVS-LAATANLAVLEEG-QQLHGLVIKLGFESDLHVTNAAM 753

Query: 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429
           DM G+ G + +  K+   +    +   L W  L+SA   HG    A E  +++++
Sbjct: 754 DMYGKCGEMHDVLKM---LPQPINRSRLSWNILISAFARHGCFQKARETFHEMLK 805



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 188/435 (43%), Gaps = 93/435 (21%)

Query: 66  NH-LINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124
           NH L++ + +  K + A  LF  M+E +VVS+ +++ GY   G    +  +F+ ML   +
Sbjct: 130 NHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGL 189

Query: 125 WPNEFTFATVIKACSMLADLITGKQIHTHIETFGF-QYNLV------------------- 164
            P+ +T  +V++A +    LI   QIH  I   G+  Y++V                   
Sbjct: 190 VPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD 249

Query: 165 ---------------------------VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
                                      + ++L+DMY K  +++ A+R FD M  +NV+SW
Sbjct: 250 LRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISW 309

Query: 198 TSIIVAHAQNAQGH--EALEMFREFNYQSRD----------------------------- 226
           TS+I  +A++  GH   A  +F E  +++                               
Sbjct: 310 TSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG 369

Query: 227 -RPNQHMLASVINACASLGRLV-SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
             PN  M+AS+I AC+  G +   G   HG VV++G   +  V +ALV  Y   G V  +
Sbjct: 370 VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNA 429

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            K+F  + + +VV++TS++VG +  G     L+++  M   G+  N  TF  V  +C   
Sbjct: 430 QKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC--- 486

Query: 345 GLVDE---GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA-YKLAKSIQVDPDGG 400
           GL+++   G Q L  +  +YG          ++ M      ++EA Y      + D    
Sbjct: 487 GLLEDQVLGYQVLGHII-QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECD---- 541

Query: 401 PLLWGTLLSASRLHG 415
            + W  ++SA   HG
Sbjct: 542 IISWNAMISAYAHHG 556



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 145/267 (54%), Gaps = 8/267 (2%)

Query: 61  NTFTLNHLINCYVRLKKTQVA--RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQK 118
           N  +   LI+ Y +     +A  R +FDEM   N  S++++++GY+ +G  + A+ LF +
Sbjct: 305 NVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQ 364

Query: 119 MLGNLVWPNEFTFATVIKACS---MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175
           M G  V PN F  A++I ACS    +AD   G Q+H  +   G   ++ V ++LV  YG 
Sbjct: 365 MWGLGVEPNGFMVASLITACSRSGYMAD--EGFQVHGFVVKTGILGDVYVGTALVHFYGS 422

Query: 176 CNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
              V  A+++F+ M   NVVSWTS++V ++ +    E L +++    Q     NQ+  A+
Sbjct: 423 IGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR-QEGVSGNQNTFAT 481

Query: 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
           V ++C  L   V G    G +++ G E +  VA++L+ M++   SV  +  VF+ ++   
Sbjct: 482 VTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECD 541

Query: 296 VVTYTSMIVGAAKYGLGRFSLDLFNEM 322
           ++++ +MI   A +GL R SL  F+ M
Sbjct: 542 IISWNAMISAYAHHGLCRESLRCFHWM 568



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 178/441 (40%), Gaps = 125/441 (28%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H+ ++ +GF S+      LI  YV++     AR +FD M E +VVS+T++++GY   G+
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
            + A +LF  M                + C + A+                        +
Sbjct: 112 FEKAFVLFSDM----------------RHCGVKAN-----------------------HA 132

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVD + KC  ++ A  +F  M  R+VVSW ++I  +A      ++  MFR    +    P
Sbjct: 133 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM-LRGGLVP 191

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV--------------------- 267
           + + L SV+ A A  G L+     HG++ + G    D+V                     
Sbjct: 192 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 251

Query: 268 --------------------------ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301
                                      +AL+DMYAK G +  + + F+ +   +V+++TS
Sbjct: 252 KGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTS 311

Query: 302 MIVGAAKYGLG-----RFSLD----------------------------LFNEMISRGIK 328
           +I G AK+G G     R+  D                            LF +M   G++
Sbjct: 312 LISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 371

Query: 329 PNDVTFVGVLHACSHSG-LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           PN      ++ ACS SG + DEG Q +     K GI+ D    T +V   G  G +  A 
Sbjct: 372 PNGFMVASLITACSRSGYMADEGFQ-VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ 430

Query: 388 KLAKSIQVDPDGGPLLWGTLL 408
           KL + +   PD   + W +L+
Sbjct: 431 KLFEEM---PDHNVVSWTSLM 448



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 43/223 (19%)

Query: 126 PNEFTFATVIKACSMLADLITGKQ---IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182
           P     +  +K   +  D    KQ   IHTH+ T GF  +L + + L+  Y K  DV  A
Sbjct: 25  PTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAA 84

Query: 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242
           R VFD M  R+VVSWT+++  ++QN +  +A  +F +                       
Sbjct: 85  RNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDM---------------------- 122

Query: 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302
             R    K  H                ALVD ++KCG +  +  +F  +    VV++ +M
Sbjct: 123 --RHCGVKANH----------------ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 164

Query: 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           I G A  G    S  +F  M+  G+ P+  T   VL A +  G
Sbjct: 165 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 207



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 21/242 (8%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           R +  +   ++  C        G + H  ++ +G   +  + + L+  Y K G V  +  
Sbjct: 27  RLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARN 86

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND--VTF---VGVLHAC 341
           VF+ +   SVV++T+M+ G ++ G    +  LF++M   G+K N   V F    G +   
Sbjct: 87  VFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDA 146

Query: 342 SH--SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG 399
           S+    +++  +   ++M   Y +   A    C+   + R G + + Y L   ++   +G
Sbjct: 147 SYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEG 206

Query: 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459
                G L+ A+++HG +        QL   +  +      L N YA  G   +   LR 
Sbjct: 207 -----GGLIIANQIHGII-------TQLGYGSYDIVTG--LLINAYAKNGSLRSAKDLRK 252

Query: 460 EM 461
            M
Sbjct: 253 GM 254


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 317/550 (57%), Gaps = 7/550 (1%)

Query: 57  GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF 116
           G + +  ++  +I  Y    K   ++ LF  M   +VVS+ +++A Y   G  + A  LF
Sbjct: 110 GAMRDIISVTAMIGAYCGSLKD--SKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLF 167

Query: 117 QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
            +M      P+ +TF++++ AC+    L  G+ +H  I   GF  +  + ++L+ MY +C
Sbjct: 168 HRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRC 227

Query: 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASV 236
             ++ ARR F  +  + + +W +++ A+AQ  +G +AL +++    +    P++   +SV
Sbjct: 228 GSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFT-PDRFTFSSV 286

Query: 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV 296
           +++CASLG L  GK  H      G E + ++ +ALV+MYAKCGS+  + K F+ ISN  V
Sbjct: 287 VDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDV 346

Query: 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356
           V++++MI  +A++G    +L+L + M  +GI  N+VT   VLHACSH G + EGI +   
Sbjct: 347 VSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMG 406

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           + + +GI  D ++    +D+LGR G L EA  +  ++        L+  TLL   ++HG 
Sbjct: 407 LSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALV--TLLGGCKVHGD 464

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVE 476
           V      + +++    +   +YV L+N YA AG W++V  LR  M++ G+ ++ GCS +E
Sbjct: 465 VRRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIE 524

Query: 477 IRDQTYAFYAGNALFERGSEVLSLLRELERKMKER-GYVGGKTGLVFVDVEDEAREEIVG 535
            RD+ Y F  G+    R  E+ + L  L  +MKE  GYV   T  VF DV D+ +EE++ 
Sbjct: 525 YRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVP-DTRDVFHDVSDDKKEELLK 583

Query: 536 LHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595
            HSE++A+ FGLI+ P G T+RI+KNLR+C DCH V KL S I  R  +VRD  RFHHF 
Sbjct: 584 FHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFE 643

Query: 596 NGSCSCGDFW 605
            G CSCGD+W
Sbjct: 644 GGICSCGDYW 653



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 187/393 (47%), Gaps = 37/393 (9%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140
           ARQ+FD + + N  S++ L+  Y+     Q AL ++++M+   +  + +T ++V+ AC+ 
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--------- 191
           L D+  G+ +    E  GF+ ++VV +SL+ ++ KC  ++ A  VF  MG          
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 192 ---------------------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
                                ++VVSW ++I A+       +A  +F          P+ 
Sbjct: 121 MIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHT-PDI 179

Query: 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290
           +  +S++ ACAS  RL  G++ H  +   G + +  + + L+ MY +CGS+  + + F  
Sbjct: 180 YTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYS 239

Query: 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG 350
           I    +  + +M+   A++  G+ +L L+  M+  G  P+  TF  V+ +C+  G + EG
Sbjct: 240 IEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 299

Query: 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            + +       G   D    T +V+M  + G L +A K    I    +   + W  +++A
Sbjct: 300 -KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS---NKDVVSWSAMIAA 355

Query: 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443
           S  HG  + A+E S+ +  + Q +A   VT S+
Sbjct: 356 SAQHGHAEEALELSHLM--NLQGIAQNEVTASS 386


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/607 (32%), Positives = 332/607 (54%), Gaps = 48/607 (7%)

Query: 33  FIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           +   L  C  L SL     +H++++++    + +  + L+  Y +    + A+ +F+ + 
Sbjct: 293 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 352

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149
           + N V++T L++G++  G    ++ LF +M   L+  ++F  AT+I  C    DL  G+Q
Sbjct: 353 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 412

Query: 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ--- 206
           +H+     G    +VV +SL+ MY KC+++  A  +F  M  +++VSWTS+I A++Q   
Sbjct: 413 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 472

Query: 207 ----------------------------NAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238
                                       +    + L M++    +   RP+     ++  
Sbjct: 473 VAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFK 532

Query: 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT 298
            CA LG    G    G  V+ G   +  VA+A++ MY+KCG +  + KVF+ ++   +V+
Sbjct: 533 GCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 592

Query: 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358
           + +MI G +++G+G+ ++++F++++ RG KP+ +++V VL  CSHSGLV EG  + D M 
Sbjct: 593 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMK 652

Query: 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418
           R + I P  +H++C+VD+LGR G L EA  L   + + P     +WG LLSA ++HG  +
Sbjct: 653 RAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAE--VWGALLSACKIHGNNE 710

Query: 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478
           +A  A+  + E +   + +Y+ ++  YA AG+ ++   +R  M+  GI K PG SW+E+ 
Sbjct: 711 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVD 770

Query: 479 DQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHS 538
           ++ + F A +    +   +   L EL  K+   GYV            D  R EI   HS
Sbjct: 771 NKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVR----------TDSTRSEI--HHS 818

Query: 539 ERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGS 598
           E+LA+AFGL+++P  + I IMKNLR+C DCH V KLIS +  R+FV+RD  RFHHF  GS
Sbjct: 819 EKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGS 878

Query: 599 CSCGDFW 605
           CSCGD+W
Sbjct: 879 CSCGDYW 885



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 184/410 (44%), Gaps = 39/410 (9%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM- 119
           N  T N ++N Y +L +   A +LF  M   +V S+ +LM+GY    Q  ++L  F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
                WPN FT A  +K+C  L       Q+   ++ F  Q +  V ++LVDM+ +C  V
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 180 DGARR-------------------------------VFDLMGCRNVVSWTSIIVAHAQNA 208
           D A R                               +FD M  R+VVSW  ++ A +Q+ 
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 209 QGHEALEMFREFNYQSRD-RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
           +  EAL+M    + QS+  R +     S + ACA L  L  GK  H  V+R+    +  V
Sbjct: 270 RVREALDMV--VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYV 327

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
           ASALV++YAK G    +  VFN + + + V +T +I G  +YG    S++LFN+M +  +
Sbjct: 328 ASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELM 387

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
             +      ++  C     +  G Q L S+  K G I        ++ M  +   L  A 
Sbjct: 388 TLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            + + +    +   + W ++++A    G V  A E  + + E N    NA
Sbjct: 447 AIFRFMN---EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNA 493



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 34/190 (17%)

Query: 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK-VFNRI 291
            A  + +C + G L   +  HG +V  G      + + L+  Y  CG+++ + + +   I
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 292 SNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK----------------------- 328
           ++P+V+T+  M+ G AK G    +++LF  M +R +                        
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 329 ---------PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379
                    PN  T    + +C   G     +Q L +M +K+    D++    +VDM  R
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVR 205

Query: 380 TGRLDEAYKL 389
            G +D A +L
Sbjct: 206 CGAVDLASRL 215


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/595 (33%), Positives = 326/595 (54%), Gaps = 44/595 (7%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +HS ++ SG  SN    N L+N Y + +    A ++FD ML  +VVS+T+++A Y   G 
Sbjct: 32  IHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGC 91

Query: 109 PQIALLLFQKML--GNLVW-----------------------------PNEFTFATVIKA 137
              AL +F+ M    ++ W                              NEFT  ++++A
Sbjct: 92  WSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEA 151

Query: 138 CSMLADLITGKQIHTHIETFGFQYN-LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS 196
           C  L DL   +QIH      GF  N   V +S+V+MY +C  +   ++ FD +  + +V+
Sbjct: 152 CGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVA 211

Query: 197 WTSIIVAHAQ--NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254
           W+ ++ A+AQ  +  G  A + F+E   +   +P +    S ++ACA++  L  G+  H 
Sbjct: 212 WSIMLAAYAQSKDGSGRRAFKFFQEMEAEGI-KPGEVTFVSALDACAAMATLEHGRSMHR 270

Query: 255 VVVRSG-CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313
               SG  E + V+ + +++MY KCGS + +  VF+++    ++++ S+IV  A  G   
Sbjct: 271 RAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHAL 330

Query: 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373
            +L    EM+ +G  P+  T V +L+  SH+GL++ G++H  S  + +G+ P +    C+
Sbjct: 331 EALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCL 390

Query: 374 VDMLGRTGRLDEAYKL---AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430
           VD+L R G LD A +L   + + Q D     + W TLL+A + +G     +  + ++ E 
Sbjct: 391 VDLLARKGFLDAAEELILASPACQADT----IAWMTLLAACKSYGDPQRGIRCAERVFEL 446

Query: 431 NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNAL 490
             Q + ++V L+N YA  G W +   +R  M+R  + KEPGCSW+E+    + F +G + 
Sbjct: 447 EPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESK 506

Query: 491 FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISI 550
             +  E+   L +L  +M+E GYV   T +V  DVE+  +EEI+  HSERLA+ FGL+S 
Sbjct: 507 HPKIREICEELEKLTLRMREAGYVPDTTNVVH-DVEEGDKEEILSRHSERLAIVFGLMST 565

Query: 551 PKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
             G TIR++KNLR+C DCH   K+IS +V R+ VVRD +RFHHF++G CSCGDFW
Sbjct: 566 RPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 620



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 184/388 (47%), Gaps = 52/388 (13%)

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P++  F   + AC+   +L  G+QIH+ +   G   N+++ +SLV+MYGKC DV  A +V
Sbjct: 8   PDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKV 67

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF-----------------NYQSRD-- 226
           FD M  R+VVSWT+++  +AQN    +AL +F                    N + +D  
Sbjct: 68  FDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDAL 127

Query: 227 -----------RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDM 274
                      R N+  L S++ AC  L  L   +  H      G   N   V +++V+M
Sbjct: 128 ELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNM 187

Query: 275 YAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA--KYGLGRFSLDLFNEMISRGIKPNDV 332
           YA+CGS+  + K F+ +    +V ++ M+   A  K G GR +   F EM + GIKP +V
Sbjct: 188 YARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEV 247

Query: 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKY---GIIPDAKHY-TCVVDMLGRTGRLDEAYK 388
           TFV  L AC+        ++H  SM+R+    G +  +      +++M G+ G   +A  
Sbjct: 248 TFVSALDACAAMAT----LEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKL 303

Query: 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV--ANAYVTLSNTYA 446
           +   +   P+   + W +L+ A   +G    A+EA + L E   Q    ++  ++S  Y 
Sbjct: 304 VFDQM---PEKCLISWNSLIVAYAHNGH---ALEALSSLQEMLLQGFDPDSGTSVSILYG 357

Query: 447 L--AGEWE-NVHSLRSEMKRTGIHKEPG 471
           L  AG  E  V   RS ++  G+    G
Sbjct: 358 LSHAGLLERGVEHFRSSIQDHGLEPSSG 385



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 42/219 (19%)

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RP++ +    ++ACA+ G L  G+  H  VV SG   N +++++LV+MY KC  V  ++K
Sbjct: 7   RPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEK 66

Query: 287 VFNRISNPSVVTYTSMI-----------------------------VGAAKYGLGRF--S 315
           VF+ +    VV++T+M+                             V  A  G  +F  +
Sbjct: 67  VFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDA 126

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC--- 372
           L+LF+ M   G++ N+ T + +L AC   GL D  ++    ++ +        + T    
Sbjct: 127 LELFHGMELEGLRSNEFTLLSLLEAC--GGLED--LKLARQIHARAAAGGFGGNSTAVGN 182

Query: 373 -VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA 410
            VV+M  R G L +  K   S++   + G + W  +L+A
Sbjct: 183 SVVNMYARCGSLLDTKKAFDSLE---EKGLVAWSIMLAA 218



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 33  FIQQLQECKHLISLA---SVHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEM 88
           F+  L  C  + +L    S+H     SGF+  +  L N +IN Y +      A+ +FD+M
Sbjct: 249 FVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQM 308

Query: 89  LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG- 147
            E  ++S+ SL+  Y + G    AL   Q+ML     P+  T  +++   S    L  G 
Sbjct: 309 PEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGV 368

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR-VFDLMGCR-NVVSWTSIIVA 203
           +   + I+  G + +      LVD+  +   +D A   +     C+ + ++W +++ A
Sbjct: 369 EHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAA 426


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 319/590 (54%), Gaps = 38/590 (6%)

Query: 48  SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +VH+ +++ G   N    + L+  Y        AR L  E   P  V++ +L++G+   G
Sbjct: 44  AVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGG 101

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSM-LADLITGKQIHTHIETFGFQYNLVVC 166
           +   +   F  M      P   T+ +V+ AC     D++ G Q+H  +   G   +L V 
Sbjct: 102 RFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVE 161

Query: 167 SSLVDMYGKCND-------------------------------VDGARRVFDLMGCRNVV 195
           ++LVDMY +C D                               VD AR +FD M  R+ V
Sbjct: 162 NALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTV 221

Query: 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255
           SWT++I  +   A+  EALEMFRE  Y S    ++  + SVI ACA LG L  G+     
Sbjct: 222 SWTAMIDGYVWAARFREALEMFREMQY-SNVSADEFTMVSVITACAQLGALEMGEWVRVY 280

Query: 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315
           + R G + +  V +AL+DMY+KCGS+  +  VF  + +    T+T++I+G A  G    +
Sbjct: 281 MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEA 340

Query: 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375
           +++F+ MI     P++VTF+GVL AC+H+GLVD+G +   SM   Y I P+  HY C++D
Sbjct: 341 IEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIID 400

Query: 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435
           +LGR G++ EA      + + P+    +WGTLL+A R+HG  +I    + +L+E + + +
Sbjct: 401 LLGRAGKITEALDTIDQMPMTPNS--TIWGTLLAACRVHGNSEIGELVAERLLELDPENS 458

Query: 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGS 495
             Y+ LSN YA    WE+V  LR  +   GI KEPGCS +E+    + F AG+       
Sbjct: 459 MVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSK 518

Query: 496 EVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGIT 555
           E+ S L  +   +   GY    T  VFV+V ++ +++++  HSE+LA+AF L+S      
Sbjct: 519 EIYSKLESIISDLNNVGYFPDVTE-VFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTV 577

Query: 556 IRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           IRI+KNLRMC DCH+  KLIS +  R+ VVRD  RFHHFR+G CSC D+W
Sbjct: 578 IRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 155/354 (43%), Gaps = 45/354 (12%)

Query: 116 FQKMLGNLVWPNEFTFATVIKACSMLA----DLITGKQIHTHIETFGFQYNLVVCSSLVD 171
           + +ML     P+ +TF  ++KA +  A         + +H H+   G   N  V SSLV 
Sbjct: 7   YARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVA 66

Query: 172 MYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230
            Y    D         L+G C   V+W ++I  H +  +  E+   F +   ++   P  
Sbjct: 67  AYTAGGD---GAAARALVGECDTPVAWNALISGHNRGGRFGESCGSFVDMA-RAGAAPTP 122

Query: 231 HMLASVINACASLGR-LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFN 289
               SV++AC    R ++ G   HG VV SG   +  V +ALVDMYA+C  +  + KVF+
Sbjct: 123 VTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFD 182

Query: 290 RISNPSVVTYTSMIVGAAKYG-----------------------------LGRF--SLDL 318
            +   SVV++TS++ G A+ G                               RF  +L++
Sbjct: 183 GMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEM 242

Query: 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378
           F EM    +  ++ T V V+ AC+  G ++ G      M R+ GI  DA     ++DM  
Sbjct: 243 FREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYS 301

Query: 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432
           + G ++ A  + K +          W  ++    ++G  + A+E  +++I  ++
Sbjct: 302 KCGSIERALDVFKGMH---HRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSE 352



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 227 RPNQH----MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282
           RP+ +    +L +V  A    G     +  H  VVR G   N  VAS+LV  Y   G   
Sbjct: 16  RPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGA 75

Query: 283 YSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342
            +  +      P  V + ++I G  + G    S   F +M   G  P  VT+V VL AC 
Sbjct: 76  AARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACG 133

Query: 343 HSGLVDE--GIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG 400
             G  D   G+Q +       G++PD +    +VDM      +  A+K+   +QV     
Sbjct: 134 -KGTRDVLLGMQ-VHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVR---S 188

Query: 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460
            + W +LLS     G+VD A +  +++ E +     ++  + + Y  A  +     +  E
Sbjct: 189 VVSWTSLLSGLARLGQVDEARDLFDRMPERDTV---SWTAMIDGYVWAARFREALEMFRE 245

Query: 461 MKRTGIHKE 469
           M+ + +  +
Sbjct: 246 MQYSNVSAD 254


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 336/583 (57%), Gaps = 18/583 (3%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L S+     VH+ ++K     +T   N L + Y + ++ + A + F  + E +V
Sbjct: 172 LNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDV 231

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+TS+++   + GQ   +L  F  ML + + PNE+T  +V+ AC ++  L  G QIH+ 
Sbjct: 232 ISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSL 291

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ------- 206
               G+  ++++ +S++ +Y KC  +  A+++F+ M   N+V+W ++I  HA+       
Sbjct: 292 SIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAED 351

Query: 207 ----NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
               +  G  AL MF++  Y+S  +P+    +SV++ C++L  L  G+  HG +++SG  
Sbjct: 352 DVAAHKSGSTALAMFQKL-YRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVL 410

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            + VV +ALV MY KCGS++ + K F  + + +++++TSMI G A++GL + +L LF +M
Sbjct: 411 ADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDM 470

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              GIKPN VTFVGVL ACSH+GL DE + + + M ++Y I P   H+ C++DM  R GR
Sbjct: 471 RLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGR 530

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           ++EA+ +   +  +P+    +W  L++  R HG+ D+   A+ QL++   +    YV+L 
Sbjct: 531 VEEAFDVVHKMNFEPN--ETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLL 588

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N +  AG W++V  +R  MK   + K    SW+ I+++ Y+F   +    +  E+  LL 
Sbjct: 589 NMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLE 648

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEARE-EIVGLHSERLALAFGLISIPKGITIRIMKN 561
            +  ++K  GY   +   V    E+E R      LHSE+LA+AFGL+++P    IR++K+
Sbjct: 649 TVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKS 708

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           + MCRDCH+  + IS +  R+ V+RD  + H F NG CSCG +
Sbjct: 709 ITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGY 751



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 212/406 (52%), Gaps = 19/406 (4%)

Query: 31  AHFIQQLQEC--KHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +++   LQEC  ++L + A  +H  I+K+GF  + F +  L+N Y +    + A ++FD 
Sbjct: 65  SYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDN 124

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +   NV ++T+L+ GY+    P +AL LF KML    +P+ +T   V+ ACS L  +  G
Sbjct: 125 LPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFG 184

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           KQ+H ++  +   ++  + +SL   Y K   ++ A + F ++  ++V+SWTS+I +   N
Sbjct: 185 KQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDN 244

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            Q   +L  F +       +PN++ L SV++AC  +  L  G   H + ++ G   + ++
Sbjct: 245 GQAARSLSFFMDM-LSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILI 303

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK-----------YGLGRFSL 316
            ++++ +Y KCG +  + K+F  +   ++VT+ +MI G AK           +  G  +L
Sbjct: 304 KNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTAL 363

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            +F ++   G+KP+  TF  VL  CS+   +++G + +     K G++ D    T +V M
Sbjct: 364 AMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQG-EQIHGQIIKSGVLADVVVGTALVSM 422

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             + G +D+A   +K+    P    + W ++++    HG    A++
Sbjct: 423 YNKCGSIDKA---SKAFLEMPSRTMISWTSMITGFARHGLSQQALQ 465


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 336/583 (57%), Gaps = 18/583 (3%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L S+     VH+ ++K     +T   N L + Y + ++ + A + F  + E +V
Sbjct: 166 LNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDV 225

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+TS+++   + GQ   +L  F  ML + + PNE+T  +V+ AC ++  L  G QIH+ 
Sbjct: 226 ISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSL 285

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ------- 206
               G+  ++++ +S++ +Y KC  +  A+++F+ M   N+V+W ++I  HA+       
Sbjct: 286 SIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAED 345

Query: 207 ----NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
               +  G  AL MF++  Y+S  +P+    +SV++ C++L  L  G+  HG +++SG  
Sbjct: 346 DVAAHKSGSTALAMFQKL-YRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVL 404

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            + VV +ALV MY KCGS++ + K F  + + +++++TSMI G A++GL + +L LF +M
Sbjct: 405 ADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDM 464

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              GIKPN VTFVGVL ACSH+GL DE + + + M ++Y I P   H+ C++DM  R GR
Sbjct: 465 RLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGR 524

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           ++EA+ +   +  +P+    +W  L++  R HG+ D+   A+ QL++   +    YV+L 
Sbjct: 525 VEEAFDVVHKMNFEPN--ETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLL 582

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N +  AG W++V  +R  MK   + K    SW+ I+++ Y+F   +    +  E+  LL 
Sbjct: 583 NMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLE 642

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEARE-EIVGLHSERLALAFGLISIPKGITIRIMKN 561
            +  ++K  GY   +   V    E+E R      LHSE+LA+AFGL+++P    IR++K+
Sbjct: 643 TVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKS 702

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDF 604
           + MCRDCH+  + IS +  R+ V+RD  + H F NG CSCG +
Sbjct: 703 ITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGY 745



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 212/406 (52%), Gaps = 19/406 (4%)

Query: 31  AHFIQQLQEC--KHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           +++   LQEC  ++L + A  +H  I+K+GF  + F +  L+N Y +    + A ++FD 
Sbjct: 59  SYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDN 118

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           +   NV ++T+L+ GY+    P +AL LF KML    +P+ +T   V+ ACS L  +  G
Sbjct: 119 LPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFG 178

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           KQ+H ++  +   ++  + +SL   Y K   ++ A + F ++  ++V+SWTS+I +   N
Sbjct: 179 KQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDN 238

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            Q   +L  F +       +PN++ L SV++AC  +  L  G   H + ++ G   + ++
Sbjct: 239 GQAARSLSFFMDM-LSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILI 297

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK-----------YGLGRFSL 316
            ++++ +Y KCG +  + K+F  +   ++VT+ +MI G AK           +  G  +L
Sbjct: 298 KNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTAL 357

Query: 317 DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376
            +F ++   G+KP+  TF  VL  CS+   +++G + +     K G++ D    T +V M
Sbjct: 358 AMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQG-EQIHGQIIKSGVLADVVVGTALVSM 416

Query: 377 LGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422
             + G +D+A   +K+    P    + W ++++    HG    A++
Sbjct: 417 YNKCGSIDKA---SKAFLEMPSRTMISWTSMITGFARHGLSQQALQ 459


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 204/532 (38%), Positives = 305/532 (57%), Gaps = 10/532 (1%)

Query: 49  VHSEILKSGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           +HS  ++ G+L  + F     ++ Y +  + ++AR LF EM   NVV++ ++M   +  G
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199

Query: 108 QP--QIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
           +P   I      +  G L  PN  +      AC+    L  G+Q H  +   GF+ ++ V
Sbjct: 200 RPLETIEAYFGLREAGGL--PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 257

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            +S+VD YGKC     AR VFD MG RN VSW S++ A+AQN    EA   +     +S 
Sbjct: 258 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR-RSG 316

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
           + P   M++S +  CA L  L  G+  H V VRS  + N  VASALVDMY KCG V  ++
Sbjct: 317 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 376

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHS 344
           ++F      ++VT+ +MI G A  G  + +L +F++MI  G   PN +T V V+ +CS  
Sbjct: 377 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 436

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GL  +G +  ++M  ++GI P  +HY CVVD+LGR G  ++AY++ + + + P     +W
Sbjct: 437 GLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSIS--VW 494

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
           G LL A ++HG+ ++   A+ +L E + Q +  +V LSN +A AG W     +R EMK  
Sbjct: 495 GALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNV 554

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
           GI K+PGCSWV  ++  + F A +   E  +E+ +LL +L ++M+  GY+   T     D
Sbjct: 555 GIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYM-PDTQYSLYD 613

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLIS 576
           +E+E +E  V  HSE+LALAFGLI IP G+ IRIMKNLR+C DCH  FK IS
Sbjct: 614 LEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFIS 665



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 175/387 (45%), Gaps = 12/387 (3%)

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           + F   HL+N Y +L     A         P VVSYT+ ++G    G+P  AL  F  ML
Sbjct: 50  SPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGML 109

Query: 121 GNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQY--NLVVCSSLVDMYGKCN 177
              + PN+FTF +  KA +      T G QIH+    FG+      V C++L DMY K  
Sbjct: 110 RLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAAL-DMYFKTG 168

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
            +  AR +F  M  RNVV+W +++     + +  E +E +     ++   PN     +  
Sbjct: 169 RLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLR-EAGGLPNVVSACAFF 227

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
           NACA    L  G+  HG VV+ G E +  V +++VD Y KC     +  VF+ +   + V
Sbjct: 228 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 287

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHLDS 356
           ++ SM+   A+ G    +   +      G +P D      L  C  +GL+   + + L +
Sbjct: 288 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC--AGLLGLHLGRALHA 345

Query: 357 MYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416
           +  +  I  +    + +VDM G+ G +++A ++       P    + W  ++      G 
Sbjct: 346 VAVRSCIDANIFVASALVDMYGKCGCVEDAEQI---FYETPQRNLVTWNAMIGGYAHIGD 402

Query: 417 VDIAVEASNQLIESNQQVANAYVTLSN 443
              A+   + +I S +   N Y+TL N
Sbjct: 403 AQNALLVFDDMIRSGETAPN-YITLVN 428



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 37  LQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L+ L    ++H+  ++S   +N F  + L++ Y +    + A Q+F E  + N+
Sbjct: 328 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 387

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKACSMLADLITGKQI-H 151
           V++ +++ GY ++G  Q ALL+F  M+      PN  T   VI +CS       G ++  
Sbjct: 388 VTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFE 447

Query: 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS-WTSIIVA---HAQN 207
           T  E FG +      + +VD+ G+    + A  V   M  R  +S W +++ A   H + 
Sbjct: 448 TMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKT 507

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
             G  A E   E + Q       H+L S  N  AS GR
Sbjct: 508 ELGRIAAEKLFELDPQDS---GNHVLLS--NMFASAGR 540


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/528 (36%), Positives = 306/528 (57%), Gaps = 9/528 (1%)

Query: 81  ARQLFDEMLEPNVVSYTSLMAGYINMGQ-PQIALLLFQKML--GNLVWPNEFTFATVIKA 137
           AR +F ++  PN+ S+ SL+ GY  +    +  + LF+K+   G  V PN FT A V+KA
Sbjct: 43  ARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPV-PNSFTLAFVLKA 101

Query: 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197
           C+++     G Q+H+H+   GF  +L V +SLV+ YGKC ++  AR+VF+ M  RN+V+W
Sbjct: 102 CAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAW 161

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           T++I  HA+     EA+E+FRE   ++  +P+   L SV++ACA  G L  G   H  + 
Sbjct: 162 TAMISGHARVGAVDEAMELFREMQ-KAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIE 220

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           +     +  +++ALVDMYAKCG +  + +VF  +       ++SMI+G A +GL + ++D
Sbjct: 221 KYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAID 280

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
            F +M+   + P+ VTF+ VL AC+H GLV  G +   S+  ++GI P  +HY C VD+L
Sbjct: 281 AFQQMLETEVTPDHVTFLAVLSACAHGGLVSRG-RRFWSLMLEFGIEPSVEHYGCKVDLL 339

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R+G ++EAY++  ++++ P+     W +LL   +    +++    +  L+E     A  
Sbjct: 340 CRSGLVEEAYRITTTMKIPPNAA--TWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAEN 397

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           Y+ +SN Y+   +WE +  LR  MK   I   PGCS +E+    + F  G+        +
Sbjct: 398 YIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKML 457

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
              + E+  ++++ GY    +  V   V DE +E  +  HSER A+A+GL+     I IR
Sbjct: 458 REFMEEMSMRVRDSGYRPSISD-VLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIR 516

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR+C DCH+V K+IS + ER+ +VRD  RFH F  G+CSC DFW
Sbjct: 517 VVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 146/264 (55%), Gaps = 2/264 (0%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VHS +LK GF S+ F    L+N Y + ++   AR++F+EM   N+V++T++++G+  +G 
Sbjct: 114 VHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGA 173

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              A+ LF++M    + P+  T  +V+ AC++   L  G  +H +IE +    +L + ++
Sbjct: 174 VDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTA 233

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LVDMY KC  ++ A++VF  M  ++  +W+S+I+  A +    +A++ F++   ++   P
Sbjct: 234 LVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM-LETEVTP 292

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           +     +V++ACA  G +  G+    +++  G E +       VD+  + G V  + ++ 
Sbjct: 293 DHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRIT 352

Query: 289 NRIS-NPSVVTYTSMIVGAAKYGL 311
             +   P+  T+ S+++G  K  L
Sbjct: 353 TTMKIPPNAATWRSLLMGCKKKKL 376



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 17/239 (7%)

Query: 268 ASALVDMYAKC-----GSVNYSDKVFNRISNPSVVTYTSMIVGAAK-YGLGRFSLDLFNE 321
           A AL  + A C     G++NY+  VF +I +P++ ++ S+I G ++ + L +  + LF +
Sbjct: 22  AFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKK 81

Query: 322 MISRGIK-PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380
           +   G   PN  T   VL AC+      EG+Q + S   K G        T +V+  G+ 
Sbjct: 82  LTETGYPVPNSFTLAFVLKACAIVTAFGEGLQ-VHSHVLKDGFGSSLFVQTSLVNFYGKC 140

Query: 381 GRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN-QQVANAYV 439
             +  A K+ + +   P    + W  ++S     G VD A+E   ++ ++  Q  A   V
Sbjct: 141 EEIGFARKVFEEM---PVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLV 197

Query: 440 TLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVL 498
           ++ +  A+AG  +  + L + +++  +  +     +E+       YA     ER  +V 
Sbjct: 198 SVVSACAVAGALDIGYWLHAYIEKYFVLTD-----LELSTALVDMYAKCGCIERAKQVF 251


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 326/588 (55%), Gaps = 18/588 (3%)

Query: 30  KAHFIQQLQECKHLISLASVHSEI--LKSGFLSNTFTLNHLINCYVRLKKTQVA------ 81
           +AH +  ++ C  L++L S H+ +  L+   L+  F L+ L+   V       A      
Sbjct: 67  EAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASS 126

Query: 82  --RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKAC 138
             R LFD++ +P    Y SL+      G    AL ++++ML      PN FT A  +KAC
Sbjct: 127 YARNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSPRPNSFTLAFALKAC 185

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSW 197
           + +     G+Q+H      G   +  V + L+++Y KC  V  AR VFD M G +N+V+W
Sbjct: 186 AAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAW 245

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           ++++  +++    +EAL +FRE      + P++  + SVI+ACA  G L  GK  H  + 
Sbjct: 246 SAMVSGYSRVGMVNEALGLFREMQAVGVE-PDEVTMVSVISACAKAGALDLGKWVHAYID 304

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           R G   +  +++AL+DMYAKCG +  +  VF+ +       +++MIVG A +GL   +L 
Sbjct: 305 RKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 364

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF+ M+   ++PN+VTF+GVL AC+HSGLV++G ++  S+ +  GI P  ++Y C+VD+L
Sbjct: 365 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYW-SIMQNLGIKPSMENYGCMVDLL 423

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R+G LD+AY     + V P+   ++W TLL A +   R+DIA  A+ +L+E        
Sbjct: 424 CRSGLLDDAYSFVIGMPVSPNS--VIWRTLLVACKSSNRIDIAESATKRLLELEPHNPEN 481

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN YA   +W+ V  LR +MK   +    G S +EI    + F   +       E+
Sbjct: 482 YVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREI 541

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             +LRE+  +++  G+    T  V  DV +E +E  +  HSERLA+A+GL+       IR
Sbjct: 542 RLVLREMADRVRRAGH-KPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIR 600

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR C DCH+V K+IS    R+ VVRD  RFH F  GSCSC DFW
Sbjct: 601 VVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 318/572 (55%), Gaps = 6/572 (1%)

Query: 37  LQECKHL--ISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L+ C HL  +SLA  +++ +LK+GF+  +   N LI+ Y +      AR +F+ M   + 
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           VS+ S+++GYI  G    A+ LF+ M+      +  T+  +I   + LADL  GK +H++
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
               G   +L V ++L+DMY KC +V  + ++F  MG  + V+W ++I A  +       
Sbjct: 434 GIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATG 493

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           L++  +   +S   P+       +  CASL     GK  H  ++R G E    + +AL++
Sbjct: 494 LQVTTQMR-KSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY+KCG +  S +VF R+S   VVT+T MI     YG G  +L+ F +M   GI P+ V 
Sbjct: 553 MYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVV 612

Query: 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           F+ +++ACSHSGLVDEG+   + M   Y I P  +HY CVVD+L R+ ++ +A +  +++
Sbjct: 613 FIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAM 672

Query: 394 QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453
            + PD    +W ++L A R  G ++ A   S ++IE N       +  SN YA   +W+ 
Sbjct: 673 PIKPDAS--IWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDK 730

Query: 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513
           V  +R  +K   I K PG SW+E+    + F +G+    +   +   L  L   M + GY
Sbjct: 731 VSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGY 790

Query: 514 VGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFK 573
           +     +     E+E +  ++  HSERLA+AFGL++   G  +++MKNLR+C DCH+V K
Sbjct: 791 IPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTK 850

Query: 574 LISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LIS IV R+ +VRD NRFH F++G+CSC D W
Sbjct: 851 LISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 219/453 (48%), Gaps = 11/453 (2%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLAS---VHSEILKSGFL 59
           ++ ++N +F  A     +  +      K  F   ++ C  L        V+ +IL  GF 
Sbjct: 79  RAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFE 138

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119
           S+ F  N L++ Y R+     ARQ+FDEM   ++VS+ SL++GY + G  + AL ++ ++
Sbjct: 139 SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHEL 198

Query: 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179
             + + P+ FT ++V+ A   L  +  G+ +H      G    +VV + LV MY K    
Sbjct: 199 KNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRP 258

Query: 180 DGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239
             ARRVFD M  R+ VS+ ++I  + +     E++ MF E   Q   +P+   ++SV+ A
Sbjct: 259 TDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQF--KPDLLTVSSVLRA 316

Query: 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTY 299
           C  L  L   K  +  ++++G      V + L+D+YAKCG +  +  VFN +     V++
Sbjct: 317 CGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSW 376

Query: 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359
            S+I G  + G    ++ LF  M+    + + +T++ ++   +    +  G + L S   
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFG-KGLHSNGI 435

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419
           K GI  D      ++DM  + G + ++ K+  S+     G  + W T++SA    G    
Sbjct: 436 KSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGT---GDTVTWNTVISACVRFGDFAT 492

Query: 420 AVEASNQLIESN--QQVANAYVTLSNTYALAGE 450
            ++ + Q+ +S     +A   VTL    +LA +
Sbjct: 493 GLQVTTQMRKSEVVPDMATFLVTLPMCASLAAK 525



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 183/362 (50%), Gaps = 6/362 (1%)

Query: 35  QQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEP-NV 93
           + L    +L  L  +H+ ++  G  S+ F    LI+ Y   ++   +  +F  +    NV
Sbjct: 12  RALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNV 71

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
             + S++  +   G    AL  + K+  + V P+++TF +VIKAC+ L D   G  ++  
Sbjct: 72  YLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ 131

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213
           I   GF+ +L V ++LVDMY +   +  AR+VFD M  R++VSW S+I  ++ +    EA
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191

Query: 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273
           LE++ E    S   P+   ++SV+ A  +L  +  G+  HG  ++SG     VV + LV 
Sbjct: 192 LEIYHELK-NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVA 250

Query: 274 MYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333
           MY K      + +VF+ +     V+Y +MI G  K  +   S+ +F E + +  KP+ +T
Sbjct: 251 MYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLT 309

Query: 334 FVGVLHACSHSGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS 392
              VL AC H  L D  + +++ +   K G + ++     ++D+  + G +  A  +  S
Sbjct: 310 VSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNS 367

Query: 393 IQ 394
           ++
Sbjct: 368 ME 369



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGL 311
           H +V+  G + +D  +  L+D Y+       S  VF R+S   +V  + S+I   +K GL
Sbjct: 27  HALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGL 86

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK---YGIIPDAK 368
              +L+ + ++    + P+  TF  V+ AC  +GL D  +  L  +Y +    G   D  
Sbjct: 87  FPEALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEMGDL--VYEQILDMGFESDLF 142

Query: 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428
               +VDM  R G L  A ++   +   P    + W +L+S    HG  + A+E  ++L 
Sbjct: 143 VGNALVDMYSRMGLLTRARQVFDEM---PVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199

Query: 429 ES 430
            S
Sbjct: 200 NS 201


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 324/584 (55%), Gaps = 15/584 (2%)

Query: 33  FIQQLQECKHLISLAS---VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89
           F   L+ C  L +L     +H   LK GF       N L++ Y +  +   A ++F  ++
Sbjct: 110 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIV 169

Query: 90  EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV--WPNEFTFATVIKACSMLADLITG 147
           + +++S+ +++AG+++ G    AL  F  M    +   P+EFT  +++KACS    +  G
Sbjct: 170 DRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229

Query: 148 KQIHTHIETFGFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205
           KQIH  +   GF    +  +  SLVD+Y KC  +  AR+ FD +  + ++SW+S+I+ +A
Sbjct: 230 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 289

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265
           Q  +  EA+ +F+    +   + +   L+S+I   A    L  GK    + V+       
Sbjct: 290 QEGEFVEAMGLFKRLQ-ELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLET 348

Query: 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
            V +++VDMY KCG V+ ++K F  +    V+++T +I G  K+GLG+ S+ +F EM+  
Sbjct: 349 SVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRH 408

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
            I+P++V ++ VL ACSHSG++ EG +    +   +GI P  +HY CVVD+LGR GRL E
Sbjct: 409 NIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKE 468

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           A  L  ++ + P+ G  +W TLLS  R+HG +++  E    L+  + +    YV +SN Y
Sbjct: 469 AKHLIDTMPIKPNVG--IWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLY 526

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
             AG W    + R      G+ KE G SWVEI  + + F +G         +   L+E E
Sbjct: 527 GQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAE 586

Query: 506 RKMKER-GYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLIS---IPKGITIRIMKN 561
           R+++E  GYV G    +  D++DE++EE +  HSE+LA+   L +     KG TIR+ KN
Sbjct: 587 RRLREELGYVYGLKHELH-DIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKN 645

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR+C DCH+  K +S I +  +VVRD  RFH F +G CSCGD+W
Sbjct: 646 LRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 213/390 (54%), Gaps = 11/390 (2%)

Query: 47  ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINM 106
             VH  +LKSG   N  T N+LI+ Y + ++  +A ++FD M E NVVS+++LM+G++  
Sbjct: 26  GQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLN 85

Query: 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC 166
           G  + +L LF +M    ++PNEFTF+T +KAC +L  L  G QIH      GF+  + V 
Sbjct: 86  GDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVG 145

Query: 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF---REFNYQ 223
           +SLVDMY KC  ++ A +VF  +  R+++SW ++I        G +AL+ F   +E N  
Sbjct: 146 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANI- 204

Query: 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSV 281
            ++RP++  L S++ AC+S G + +GK  HG +VRSG  C  +  +  +LVD+Y KCG +
Sbjct: 205 -KERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 263

Query: 282 NYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341
             + K F++I   ++++++S+I+G A+ G    ++ LF  +     + +      ++   
Sbjct: 264 FSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVF 323

Query: 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP 401
           +   L+ +G Q + ++  K     +      VVDM  + G +DEA K    +Q+      
Sbjct: 324 ADFALLRQGKQ-MQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKD---V 379

Query: 402 LLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           + W  +++    HG    +V    +++  N
Sbjct: 380 ISWTVVITGYGKHGLGKKSVRIFYEMLRHN 409



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 155/313 (49%), Gaps = 8/313 (2%)

Query: 126 PNEF-TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184
           PN+     ++++ C+       G Q+H ++   G   NL+  + L+DMY KC +   A +
Sbjct: 3   PNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           VFD M  RNVVSW++++  H  N     +L +F E   Q    PN+   ++ + AC  L 
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQG-IYPNEFTFSTNLKACGLLN 121

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G   HG  ++ G E    V ++LVDMY+KCG +N ++KVF RI + S++++ +MI 
Sbjct: 122 ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIA 181

Query: 305 GAAKYGLGRFSLDLFNEMISRGIK--PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362
           G    G G  +LD F  M    IK  P++ T   +L ACS +G++  G Q    + R   
Sbjct: 182 GFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGF 241

Query: 363 IIPDAKHYT-CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
             P +   T  +VD+  + G L  A K    I+   +   + W +L+      G    A+
Sbjct: 242 HCPSSATITGSLVDLYVKCGYLFSARKAFDQIK---EKTMISWSSLILGYAQEGEFVEAM 298

Query: 422 EASNQLIESNQQV 434
               +L E N Q+
Sbjct: 299 GLFKRLQELNSQI 311


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/640 (32%), Positives = 328/640 (51%), Gaps = 71/640 (11%)

Query: 33  FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLI-NCYVRLKKT-QVARQLFDEMLE 90
           ++  L +C  L     +H++I K+G  ++      L+ +C + +      A +LF     
Sbjct: 5   WVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPN 64

Query: 91  PNVVSYTSLMAGYINMGQPQIALL--LFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148
           P+   + +L+   +++ Q  ++ L    Q      + P+ FTFA  +KA +    L  G 
Sbjct: 65  PDTFMHNTLIRS-LSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGI 123

Query: 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF---------------------- 186
           Q+H+     GF  ++ V ++L+ MY +C D   ARRVF                      
Sbjct: 124 QLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCG 183

Query: 187 ------DLMGC----------------------------------RNVVSWTSIIVAHAQ 206
                 D+ GC                                  R+ VSW+++IV  A 
Sbjct: 184 DVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAH 243

Query: 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV 266
           N    EA   FRE   +   R N+  L  V++ACA  G    GK+ HG V ++G  +   
Sbjct: 244 NGCFDEAFGFFREL-LREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGS 302

Query: 267 VASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325
           V +AL+D Y+KCG+V  +  VF  +    S+V++TS+I G A +G G  ++ LF+EM   
Sbjct: 303 VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEES 362

Query: 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385
           G++P+ +TF+ +L+ACSHSGLV+EG      M   YGI P  +HY C+VD+ GR  RL +
Sbjct: 363 GVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQK 422

Query: 386 AYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445
           AY+    + V P+   ++W TLL A  +HG +++A     +L E +   +  +V LSN Y
Sbjct: 423 AYEFICEMPVSPNA--IIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVY 480

Query: 446 ALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELE 505
           A+AG+W++V S+R  M    + K PG S +EI    Y F AG    E   E    LRE+ 
Sbjct: 481 AVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIM 540

Query: 506 RKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMC 565
            +++       +   V  D+E+E +E+ V  HSE+LA AFG+  +PKG  +RI+KNLR+C
Sbjct: 541 LRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVC 600

Query: 566 RDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
            DCH V KLIS + + + +VRD +RFH F++G CSC D+W
Sbjct: 601 GDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 64/284 (22%)

Query: 29  TKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEM 88
           T A  ++ +   +HL     +HS+  + GF ++ F    LI+ Y     +  AR++FDEM
Sbjct: 105 TFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEM 164

Query: 89  LEPNVV-------------------------------SYTSLMAGYINMGQPQI------ 111
            EPNVV                               S+  ++AGY   G+  +      
Sbjct: 165 SEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFY 224

Query: 112 -------------------------ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146
                                    A   F+++L   +  NE +   V+ AC+       
Sbjct: 225 EMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEF 284

Query: 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG-CRNVVSWTSIIVAHA 205
           GK +H  +E  GF Y   V ++L+D Y KC +V  AR VF  M   R++VSWTSII   A
Sbjct: 285 GKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLA 344

Query: 206 QNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSG 249
            +  G EA+++F E   +S  RP+     S++ AC+  G +  G
Sbjct: 345 MHGCGEEAIQLFHEME-ESGVRPDGITFISLLYACSHSGLVEEG 387



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 20/271 (7%)

Query: 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG---ARR 184
           E  + +++  CS L      KQIH  I   G   + +V   L+ ++      D    A R
Sbjct: 2   EEAWVSLLSKCSSLKPT---KQIHAQICKTGLHTDPLVFGKLL-LHCAITISDALHYALR 57

Query: 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244
           +F      +     ++I + + +     +L  F +   Q    P+    A  + A A+  
Sbjct: 58  LFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSR 117

Query: 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV 304
            L  G   H    R G + +  V + L+ MYA+CG    + +VF+ +S P+VVT+ +++ 
Sbjct: 118 HLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLT 177

Query: 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII 364
            A + G    + D+F  M  R    N  ++ G+L   + +G        L    R +  +
Sbjct: 178 AAFRCGDVEGAQDVFGCMPVR----NLTSWNGMLAGYAKAG-------ELGLARRVFYEM 226

Query: 365 P--DAKHYTCVVDMLGRTGRLDEAYKLAKSI 393
           P  D   ++ ++      G  DEA+   + +
Sbjct: 227 PLRDEVSWSTMIVGFAHNGCFDEAFGFFREL 257


>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
 gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
          Length = 809

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/568 (34%), Positives = 304/568 (53%), Gaps = 15/568 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN---VVSYTSLMAGYIN 105
            H  I+ SG          L++ + R  +   AR++F+++ + +   +  + +++  Y +
Sbjct: 246 AHDYIVGSGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAH 305

Query: 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV 165
            G  + AL L   +    V PN  TF + + ACS L D   G+ +H  I+  GF   + V
Sbjct: 306 RGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQD---GRALHLLIDESGFDREVSV 362

Query: 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
            ++LV MYG+C  +  + ++F  M  +++ SW S I AHA + +  E +++  +   +  
Sbjct: 363 ANALVTMYGRCGSLLDSAKLFSEMAEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGEGG 422

Query: 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285
             P+   L + ++AC  L    S K  H      G E    VA+ LVDMY K G V+ + 
Sbjct: 423 LEPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDTAR 482

Query: 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
            +F+R    +V T+ +M     + G+ R  L L   M   G +P+ VTFV +L  C HSG
Sbjct: 483 YIFDRALRRNVTTWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPDSVTFVSLLSVCGHSG 542

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
           L++E   +  +M R++GI P  KHY+CV+D+L R G L +A      I V       +W 
Sbjct: 543 LLEEARYNFVAMRREFGIDPSPKHYSCVIDLLARAGELQQAEDFIARISVSSPASSPMWM 602

Query: 406 TLLSASRLHGRVDI--------AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457
            LL A R  G            A++       S    + A+V L+N  A +G W+   S+
Sbjct: 603 ALLGACRSLGDSSSRARRAARNAMDVEKMEPRSQHDPSAAHVALANICAASGNWDEALSI 662

Query: 458 RSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGK 517
           R  M   G+ KEPG S + ++++ + F AG+    R  E+ + LR LER M +RGYV   
Sbjct: 663 RKAMAEKGLRKEPGRSLIAVKNRLHEFVAGDRDHPRREEIYAELRRLERAMVDRGYV-VD 721

Query: 518 TGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISD 577
           TG+V  +V +  + +++G HSE+LA+AFG++S P G ++RI+KNLR C DCH   KLIS 
Sbjct: 722 TGMVTHNVGEADKRDLLGCHSEKLAVAFGVLSTPPGSSLRIIKNLRACGDCHTAIKLISA 781

Query: 578 IVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           I  R+ VVRD NRFHHFRNGSCSCGD+W
Sbjct: 782 IEGREIVVRDSNRFHHFRNGSCSCGDYW 809



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 219/426 (51%), Gaps = 25/426 (5%)

Query: 16  SSLTRQNKRSSCHTKAHFIQQLQECKHLISLA---SVHSEILKSGFLSNT-------FTL 65
           ++++R     +C + A     L+EC  L  LA    +H++I +SG L +        F  
Sbjct: 3   AAISRSGVDDACRSYARL---LKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLG 59

Query: 66  NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW 125
           N L+  Y +  +T  A++ FD +   N+ S+TS++  Y + G    AL  F +M+   V 
Sbjct: 60  NCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVE 119

Query: 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185
           P+   F   +  C +L  L  G  IH  I+      +L + ++LV MYGKC  +D A+++
Sbjct: 120 PDRLVFLAALNVCGILKRLEDGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQL 179

Query: 186 FDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245
           FD +  +NV+SWT ++   A+N +  E   + R    +   +P++ +L +++N C+S G 
Sbjct: 180 FDCLEMKNVISWTILVSVFAENGRRRETWGLLRSMAVEG-IKPDKVLLLTLLNVCSSRGV 238

Query: 246 LVSGK-VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS---VVTYTS 301
           L     +AH  +V SG +   VVA+AL+ M+A+CG V+ + ++F ++++ S   +  + +
Sbjct: 239 LDEDSWMAHDYIVGSGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNA 298

Query: 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361
           MI   A  G  + +L L + +  +G+KPN +TF+  L AC  S L D    HL  +  + 
Sbjct: 299 MITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGAC--SSLQDGRALHL--LIDES 354

Query: 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421
           G   +      +V M GR G L ++ KL   +  + D     W + ++A   HGR D  +
Sbjct: 355 GFDREVSVANALVTMYGRCGSLLDSAKLFSEM-AEKDLAS--WNSAIAAHAYHGRSDECI 411

Query: 422 EASNQL 427
           +  +Q+
Sbjct: 412 KLLDQM 417



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 163/374 (43%), Gaps = 26/374 (6%)

Query: 3   KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNT 62
           +  ++  +F L   SL  Q  + +C T   FI  L  C  L    ++H  I +SGF    
Sbjct: 306 RGCSKEALFLL--DSLQLQGVKPNCIT---FISSLGACSSLQDGRALHLLIDESGFDREV 360

Query: 63  FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122
              N L+  Y R      + +LF EM E ++ S+ S +A +   G+    + L  +M G 
Sbjct: 361 SVANALVTMYGRCGSLLDSAKLFSEMAEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGE 420

Query: 123 -LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDG 181
             + P+  T  T + AC  LAD  + K++H      G +    V + LVDMYGK  DVD 
Sbjct: 421 GGLEPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDT 480

Query: 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINA 239
           AR +FD    RNV +W ++  A+ Q       L + R      RD  RP+     S+++ 
Sbjct: 481 ARYIFDRALRRNVTTWNAMAGAYRQCGVTRGVLWLVRTMQ---RDGYRPDSVTFVSLLSV 537

Query: 240 CASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRI--SNPSV 296
           C   G L   +     + R  G + +    S ++D+ A+ G +  ++    RI  S+P+ 
Sbjct: 538 CGHSGLLEEARYNFVAMRREFGIDPSPKHYSCVIDLLARAGELQQAEDFIARISVSSPAS 597

Query: 297 VTYTSMIVGAAKYGLGRF----------SLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
                 ++GA +  LG            ++D+  +M  R         V + + C+ SG 
Sbjct: 598 SPMWMALLGACR-SLGDSSSRARRAARNAMDV-EKMEPRSQHDPSAAHVALANICAASGN 655

Query: 347 VDEGIQHLDSMYRK 360
            DE +    +M  K
Sbjct: 656 WDEALSIRKAMAEK 669


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 326/588 (55%), Gaps = 18/588 (3%)

Query: 30  KAHFIQQLQECKHLISLASVHSEI--LKSGFLSNTFTLNHLINCYVRLKKTQVA------ 81
           +AH +  ++ C  L++L S H+ +  L+   L+  F L+ L+   V       A      
Sbjct: 18  EAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASS 77

Query: 82  --RQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML-GNLVWPNEFTFATVIKAC 138
             R LFD++ +P    Y SL+      G    AL ++++ML      PN FT A  +KAC
Sbjct: 78  YARNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSPRPNSFTLAFALKAC 136

Query: 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM-GCRNVVSW 197
           + +     G+Q+H      G   +  V + L+++Y KC  V  AR VFD M G +N+V+W
Sbjct: 137 AAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAW 196

Query: 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257
           ++++  +++    +EAL +FRE      + P++  + SVI+ACA  G L  GK  H  + 
Sbjct: 197 SAMVSGYSRVGMVNEALGLFREMQAVGVE-PDEVTMVSVISACAKAGALDLGKWVHAYID 255

Query: 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317
           R G   +  +++AL+DMYAKCG +  +  VF+ +       +++MIVG A +GL   +L 
Sbjct: 256 RKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 315

Query: 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377
           LF+ M+   ++PN+VTF+GVL AC+HSGLV++G ++  S+ +  GI P  ++Y C+VD+L
Sbjct: 316 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYW-SIMQNLGIKPSMENYGCMVDLL 374

Query: 378 GRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437
            R+G LD+AY     + V P+   ++W TLL A +   R+DIA  A+ +L+E        
Sbjct: 375 CRSGLLDDAYSFVIGMPVSPNS--VIWRTLLVACKSSNRIDIAESATKRLLELEPHNPEN 432

Query: 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEV 497
           YV LSN YA   +W+ V  LR +MK   +    G S +EI    + F   +       E+
Sbjct: 433 YVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREI 492

Query: 498 LSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557
             +LRE+  +++  G+    T  V  DV +E +E  +  HSERLA+A+GL+       IR
Sbjct: 493 RLVLREMADRVRRAGH-KPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIR 551

Query: 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           ++KNLR C DCH+V K+IS    R+ VVRD  RFH F  GSCSC DFW
Sbjct: 552 VVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 317/535 (59%), Gaps = 14/535 (2%)

Query: 79  QVARQLFDEMLEPNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGNLVWPNEFTFATVIKA 137
           + A  +F  + EP    Y +LM G++  G+ P  AL L+  ML N V P+ +TF  V+KA
Sbjct: 87  EYAAAIFATLDEPEAFDYNTLMRGHVVGGRDPAAALRLYVDMLHNDVVPDGYTFPFVLKA 146

Query: 138 CSMLADLITGKQIHTHIETFGF-QYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNV 194
           C+ L     G+Q+  H    GF +++    +SL+  YGKC + + ARR F+ M  G R  
Sbjct: 147 CAQLLAFRQGRQLQGHAMKLGFLEHDEHAQNSLISFYGKCGEPELARRAFEQMEAGERTA 206

Query: 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRD--RPNQHMLASVINACASLGRLVSGKVA 252
            SW++++ A+ +  +  + LE    F    RD  RP++  + S ++ACA LG    G+  
Sbjct: 207 ASWSALLAAYTKAGRWADCLE---SFGAMVRDGWRPDESSMVSALSACAHLGAYDVGRSV 263

Query: 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI-SNPSVVTYTSMIVGAAKYGL 311
           HG ++R+    N  + ++LVDMYAKCG +  +  VF+ +    +  TY++M+ G A +G 
Sbjct: 264 HGALLRNTVTLNTFMETSLVDMYAKCGCIEKATAVFDGMDGKKNEWTYSAMVSGLALHGD 323

Query: 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT 371
           GR +L +F+ MIS G KP++  +VGVL+ACS SGL++EG++  D M  +  + P+A+HY 
Sbjct: 324 GRKALKVFDAMISEGHKPDEAVYVGVLNACSRSGLLEEGLRCFDRMRLERKVAPNAQHYG 383

Query: 372 CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431
           C+VD++ R GR+DEA +L  S+   P      W +LL+A R+HG +++A  A  +L    
Sbjct: 384 CMVDLMARAGRMDEARELIGSMPTGPTD--TAWRSLLNACRIHGDIELADRALQELARLG 441

Query: 432 QQV-ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNAL 490
             V A  Y+ L++ +A A  WE   +LR+E    G+ + PG S VE+  + + F + +  
Sbjct: 442 GAVNAGDYIILADMHAKAKNWEEAVALRTEAVHRGLAQAPGFSAVEVHGKMHRFTSQDRS 501

Query: 491 FERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISI 550
             R +++  +L ++E +++  GY    T  V ++ +DE +   V  HS++LA+AFGL+S 
Sbjct: 502 HPRTADIYEMLHQMEWQLRFEGYKP-DTSEVALEADDEEKRRAVAAHSQKLAMAFGLLST 560

Query: 551 PKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           P+G  +R++ NLRM ++CH    LIS+I  R+ VVRD NRFH FR G CSCG++W
Sbjct: 561 PEGTPVRVVTNLRMSKECHAYSALISEIFGREVVVRDRNRFHRFRRGGCSCGNYW 615



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 24/189 (12%)

Query: 30  KAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86
           ++  +  L  C HL +     SVH  +L++    NTF    L++ Y +    + A  +FD
Sbjct: 241 ESSMVSALSACAHLGAYDVGRSVHGALLRNTVTLNTFMETSLVDMYAKCGCIEKATAVFD 300

Query: 87  EM-LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145
            M  + N  +Y+++++G    G  + AL +F  M+     P+E  +  V+ ACS    L 
Sbjct: 301 GMDGKKNEWTYSAMVSGLALHGDGRKALKVFDAMISEGHKPDEAVYVGVLNACSRSGLLE 360

Query: 146 TG----------KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV- 194
            G          +++  + + +G          +VD+  +   +D AR +   M      
Sbjct: 361 EGLRCFDRMRLERKVAPNAQHYG---------CMVDLMARAGRMDEARELIGSMPTGPTD 411

Query: 195 VSWTSIIVA 203
            +W S++ A
Sbjct: 412 TAWRSLLNA 420


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 327/612 (53%), Gaps = 12/612 (1%)

Query: 1    MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLA---SVHSEILKSG 57
            M   L  N  F  A S      +     +    I  L  C  L  L     +H E  K G
Sbjct: 528  MISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWG 587

Query: 58   FLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQI-ALLLF 116
               +    N L+  Y         +++F +M E + VS+ S +          + AL  F
Sbjct: 588  LDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYF 647

Query: 117  QKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176
             +M+     PN  TF  ++ A S  + L  G QIH  I  +    +  + ++L+  YGKC
Sbjct: 648  LEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKC 707

Query: 177  NDVDGARRVFDLMG-CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235
              ++    +F  M   R+ VSW S+I  +  +   H+A+++      Q   + +    A+
Sbjct: 708  EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM-MQRGQKLDGFTFAT 766

Query: 236  VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295
            V++ACAS+  L  G   H   VR+  E + VV SALVDMYAKCG ++Y+ + F  +   +
Sbjct: 767  VLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRN 826

Query: 296  VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD 355
            + ++ SMI G A++G G+ +L +F  M   G  P+ VTFVGVL ACSH GLVDEG +H  
Sbjct: 827  IYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFK 886

Query: 356  SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA-SRLH 414
            SM   YG+ P  +H++C+VD+LGR G + +     K++ +DP+   L+W T+L A  R +
Sbjct: 887  SMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPN--ILIWRTVLGACCRAN 944

Query: 415  GR-VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCS 473
            GR  ++   A+  LIE   Q A  YV LSN +A  G WE+V   R  M++  + K+ GCS
Sbjct: 945  GRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCS 1004

Query: 474  WVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEI 533
            WV ++D  + F AG+       ++   L+EL  K+++ GYV  +T     D+E E +EE+
Sbjct: 1005 WVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYV-PETKYALYDLELENKEEL 1063

Query: 534  VGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHH 593
            +  HSE+LA+AF +++    + IRIMKNLR+C DCH  FK IS IV R  ++RD NRFHH
Sbjct: 1064 LSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHH 1122

Query: 594  FRNGSCSCGDFW 605
            F  G CSCGD+W
Sbjct: 1123 FGGGMCSCGDYW 1134



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 199/404 (49%), Gaps = 12/404 (2%)

Query: 37  LQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSY 96
           L +C  L+ L  + + I KSGFL + +  + L+N + R      A+ +F +M + N V+ 
Sbjct: 362 LADCG-LVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTM 420

Query: 97  TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156
             LM G     Q + A  +F++M  +LV  N  +   ++   +  ++L  GK+    +  
Sbjct: 421 NGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHA 479

Query: 157 FGFQYNLV-----VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGH 211
           + F+  LV     + ++LV+MYGKC  +D A  VF LM  ++ VSW S+I     N +  
Sbjct: 480 YLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFE 539

Query: 212 EALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271
           EA+  F          P+   + S +++C+SLG L  G+  HG   + G + +  V++AL
Sbjct: 540 EAVSCFHTMKRNGM-VPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNAL 598

Query: 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF-SLDLFNEMISRGIKPN 330
           + +YA+  S+N   KVF ++     V++ S I   AKY      +L  F EM+  G +PN
Sbjct: 599 LTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPN 658

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390
            VTF+ +L A S   ++  G Q + ++  KY +  D      ++   G+  ++++   + 
Sbjct: 659 RVTFINILAAVSSFSVLGLGHQ-IHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIF 717

Query: 391 KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434
             +    D   + W +++S     G +  A++    +++  Q++
Sbjct: 718 SRMSERRD--EVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKL 759



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 207/418 (49%), Gaps = 26/418 (6%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H ++ K+GF  + F  N LIN YVR+     AR+LFDEM + N+VS++ L++GY     
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD--LITGKQIHTHIETFGFQYNLVVC 166
           P  A  LF+ ++ + + PN F   + ++AC       +  G QIH  I       ++++ 
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 167 SSLVDMYGKCN-DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR 225
           + L+ MY  C+  +D A RVFD +  RN V+W SII  + +      A ++F     +  
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 226 D---RPNQHMLASVINACASLGR--LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280
           +   RPN++ L S++ A  SL    LV  +     + +SG   +  V SALV+ +A+ G 
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGL 401

Query: 281 VNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340
           ++ +  +F ++ + + VT   ++VG A+   G  +  +F EM    ++ N  + V +L  
Sbjct: 402 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLST 460

Query: 341 CSHSGLVDEGI---QHLDSMYRKYGIIPDAKHY--TCVVDMLGRTGRLDEAYKLAKSIQV 395
            +    + EG    Q + +   + G++ DA+      +V+M G+   +D A  +    Q+
Sbjct: 461 FTEFSNLKEGKRKGQEVHAYLFRSGLV-DARISIGNALVNMYGKCTAIDNACSV---FQL 516

Query: 396 DPDGGPLLWGTLLSASRLHGRVDIAVEA-----SNQLIESNQQVANAYVTLSNTYALA 448
            P    + W +++S    + R + AV        N ++ SN  V +   TLS+  +L 
Sbjct: 517 MPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVIS---TLSSCSSLG 571



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 193/387 (49%), Gaps = 8/387 (2%)

Query: 49  VHSEILKSGFLSNTFTL-NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMG 107
           VH+ + +SG +    ++ N L+N Y +      A  +F  M   + VS+ S+++G  +  
Sbjct: 477 VHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNE 536

Query: 108 QPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS 167
           + + A+  F  M  N + P+ F+  + + +CS L  L  G+QIH     +G   ++ V +
Sbjct: 537 RFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSN 596

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ-NAQGHEALEMFREFNYQSRD 226
           +L+ +Y + + ++  ++VF  M   + VSW S I A A+  A   +AL+ F E   Q+  
Sbjct: 597 ALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEM-MQAGW 655

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
           RPN+    +++ A +S   L  G   H ++++     ++ + +AL+  Y KC  +   + 
Sbjct: 656 RPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEI 715

Query: 287 VFNRISN-PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345
           +F+R+S     V++ SMI G    G+   ++DL   M+ RG K +  TF  VL AC+   
Sbjct: 716 IFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVA 775

Query: 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWG 405
            ++ G++ + +   +  +  D    + +VDM  + G++D A   ++  ++ P      W 
Sbjct: 776 TLERGME-VHACAVRACLESDVVVGSALVDMYAKCGKIDYA---SRFFELMPVRNIYSWN 831

Query: 406 TLLSASRLHGRVDIAVEASNQLIESNQ 432
           +++S    HG    A++   ++ +  Q
Sbjct: 832 SMISGYARHGHGQKALKIFTRMKQHGQ 858



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 15/263 (5%)

Query: 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII 201
           + L     +H  +   GF  ++  C++L+++Y +  ++  AR++FD M  +N+VSW+ +I
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR--LVSGKVAHGVVVRS 259
             + QN    EA  +F+     S   PN   + S + AC   G   +  G   H  + + 
Sbjct: 214 SGYTQNRMPDEACSLFKGV-ISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKL 272

Query: 260 GCEFNDVVASALVDMYAKC-GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318
            C  + ++++ L+ MY+ C GS++ + +VF+ I   + VT+ S+I    + G    +  L
Sbjct: 273 PCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKL 332

Query: 319 FNEMISRGI----KPNDVTFVG-VLHACSHSGLVDEGIQHLDSMY---RKYGIIPDAKHY 370
           F+ M   G+    +PN+ T    V  ACS   L D G+  L+ M     K G + D    
Sbjct: 333 FSVMQMEGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVG 389

Query: 371 TCVVDMLGRTGRLDEAYKLAKSI 393
           + +V+   R G +D A  + K +
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQM 412


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 332/579 (57%), Gaps = 14/579 (2%)

Query: 37  LQECKHLISLASVHSEILK--SGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVV 94
           L  C  +  L  +H++ ++  S    NTF L   I  +  L   + A ++F ++  PN  
Sbjct: 33  LNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSF 92

Query: 95  SYTSLM-AGYINMGQPQIALLLFQKMLGN-LVWPNEFTFATVIKACSMLADLITGKQIHT 152
            + +L+ A   +  + Q A+ L+ +ML    V  ++ TF  V+KAC+ L  L  G+QIH 
Sbjct: 93  MWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHA 152

Query: 153 HIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHE 212
            I   GF  ++ + +SLV  Y  C+ +D A+ VFD M  R++VSW  +I A  +  +   
Sbjct: 153 QILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDA 212

Query: 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS--GCEFNDVVA-S 269
           AL +F E   Q    P+ + + S+ NACA +G L  G  AH  +++       NDV+  +
Sbjct: 213 ALNLFGEM--QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNT 270

Query: 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI-SRGIK 328
           +LVDMY KCGS+  + ++F+R+    V ++ SMI+G + +G    +L+ F  M+ +  + 
Sbjct: 271 SLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLM 330

Query: 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388
           PN +TFVGVL AC+H GLV EG ++ D M  +Y I P+ +HY C+VD+L R G +DEA  
Sbjct: 331 PNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALD 390

Query: 389 LAKSIQVDPDGGPLLWGTLLSAS-RLHGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYA 446
           +  ++ + PD   ++W +LL A  + +  V+++ E + +++E+   V +  YV LS  YA
Sbjct: 391 VVSNMPMRPD--LVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYA 448

Query: 447 LAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELER 506
            A  W +V  +R  M   G+ KEPGCS +EI    + F+AG+    +  E+ S L  +E 
Sbjct: 449 SASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEE 508

Query: 507 KMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCR 566
           +++  GY    +    VD   + ++  + LHSERLA+AFGL+    G+ IRI KNLR+C 
Sbjct: 509 RVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCN 568

Query: 567 DCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           +CH V KLIS +  R+ +VRD  RFHHF++G+CSC D+W
Sbjct: 569 NCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 210/608 (34%), Positives = 319/608 (52%), Gaps = 47/608 (7%)

Query: 6   TRNLIFTLAASSLTRQNKRSSCH------TKAHFIQQLQECKHLISLASVHSEILKSGFL 59
           T  ++F L++  + +   R+  H      ++   I  L+       L  VH++I+K+   
Sbjct: 31  TAKMLFALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAP 90

Query: 60  SNTFTLNHLINCYVRLKKTQVARQLFD--EMLEPNVVSYTSLMAGYINMGQPQIALLLFQ 117
            +   L  +            A+Q+F   E  +P    + S +        P  A++LF 
Sbjct: 91  LSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFY 150

Query: 118 KMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177
           ++    V P+ FT ++V++AC  L DL  G+ +H  +E  GF+                 
Sbjct: 151 RLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR----------------- 193

Query: 178 DVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237
                             SWTS+I  + Q  +  EA+ +F +   ++  + N+  + +V+
Sbjct: 194 ------------------SWTSMIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVL 234

Query: 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV 297
            ACA LG L  G   H    R G + N  +++ L+DMY KCG +  + KVF  +   +VV
Sbjct: 235 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 294

Query: 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357
           ++++MI G A +G    +L LF++M   GI+PN VTF+G+LHACSH GL+ EG +   SM
Sbjct: 295 SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 354

Query: 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417
            R YGIIP  +HY C+VD+L R G L EA++   ++ + P+G  ++WG LL A R+H  V
Sbjct: 355 TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG--VVWGALLGACRVHKNV 412

Query: 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477
           ++A EA   L+E +      YV LSN YA AG WE+   +R  MK   + K PG S + +
Sbjct: 413 EMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITV 472

Query: 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLH 537
               + F AG        ++     EL  +M+ +GYV   T +V +D+E+  + + V  H
Sbjct: 473 DGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPN-TSVVLLDIEEGEKVKFVSRH 531

Query: 538 SERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNG 597
           SE+LAL FGL++ P    IRIMKNLR+C DCH  FKLIS IV R+ VVRD NRFH F + 
Sbjct: 532 SEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDN 591

Query: 598 SCSCGDFW 605
           SCSC D+W
Sbjct: 592 SCSCRDYW 599


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 193/565 (34%), Positives = 318/565 (56%), Gaps = 15/565 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++ SG   N    N L++ Y ++ +   +R++  +M   +VV++ +L+ GY     
Sbjct: 367 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 426

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT-GKQIHTHIETFGFQYNLVVCS 167
           P  AL  FQ M    V  N  T  +V+ AC +  DL+  GK +H +I + GF+ +  V +
Sbjct: 427 PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 486

Query: 168 SLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM---FREFNYQS 224
           SL+ MY KC D+  ++ +F+ +  RN+++W +++ A+A +  G E L++    R F    
Sbjct: 487 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS- 545

Query: 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284
               +Q   +  ++A A L  L  G+  HG+ V+ G E +  + +A  DMY+KCG +   
Sbjct: 546 ---LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV 602

Query: 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344
            K+     N S+ ++  +I    ++G        F+EM+  GIKP  VTFV +L ACSH 
Sbjct: 603 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 662

Query: 345 GLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404
           GLVD+G+ + D + R +G+ P  +H  CV+D+LGR+GRL EA      + + P+   L+W
Sbjct: 663 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPN--DLVW 720

Query: 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464
            +LL++ ++HG +D   +A+  L +   +  + YV  SN +A  G WE+V ++R +M   
Sbjct: 721 RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 780

Query: 465 GIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVD 524
            I K+  CSWV+++D+  +F  G+    +  E+ + L ++++ +KE GYV   T     D
Sbjct: 781 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV-ADTSQALQD 839

Query: 525 VEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVERDFV 584
            ++E +E  +  HSERLALA+ L+S P+G T+RI KNLR+C DCH V+K +S ++ R  V
Sbjct: 840 TDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIV 899

Query: 585 VRDVNRFHHFRNGSCSCG----DFW 605
           +RD  RFHHF  G    G     FW
Sbjct: 900 LRDQYRFHHFERGLFGKGSGFQQFW 924



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 193/384 (50%), Gaps = 10/384 (2%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           +H  ++K GF S     N L+  Y    ++  A  +F +M   +++S+ SLMA ++N G+
Sbjct: 266 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 325

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
              AL L   M+ +    N  TF + + AC        G+ +H  +   G  YN ++ ++
Sbjct: 326 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 385

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           LV MYGK  ++  +RRV   M  R+VV+W ++I  +A++    +AL  F+    +     
Sbjct: 386 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVS-S 444

Query: 229 NQHMLASVINACASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287
           N   + SV++AC   G L+  GK  H  +V +G E ++ V ++L+ MYAKCG ++ S  +
Sbjct: 445 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDL 504

Query: 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347
           FN + N +++T+ +M+   A +G G   L L ++M S G+  +  +F   L A +   ++
Sbjct: 505 FNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVL 564

Query: 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLL--WG 405
           +EG Q L  +  K G   D+  +    DM  + G + E  K+     + P     L  W 
Sbjct: 565 EEG-QQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM-----LPPSVNRSLPSWN 618

Query: 406 TLLSASRLHGRVDIAVEASNQLIE 429
            L+SA   HG  +      ++++E
Sbjct: 619 ILISALGRHGYFEEVCATFHEMLE 642



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 6/343 (1%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH  + KSG LS+ +    +++ Y        +R++F+EM + NVVS+TSLM GY + G+
Sbjct: 64  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 123

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P+  + +++ M G  V  NE + + VI +C +L D   G+QI   +   G +  L V +S
Sbjct: 124 PEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENS 183

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR--D 226
           L+ M G   +VD A  +FD M  R+ +SW SI  A+AQN    E+   FR F+   R  D
Sbjct: 184 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEES---FRIFSLMRRFHD 240

Query: 227 RPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286
             N   ++++++    +     G+  HG+VV+ G +    V + L+ MYA  G    ++ 
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 287 VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346
           VF ++    ++++ S++      G    +L L   MIS G   N VTF   L AC     
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360

Query: 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389
            ++G + L  +    G+  +      +V M G+ G + E+ ++
Sbjct: 361 FEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 402



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 172/360 (47%), Gaps = 16/360 (4%)

Query: 92  NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI-TGKQI 150
           N VS+ ++M+G + +G     +  F+KM    + P+ F  A+++ AC     +   G Q+
Sbjct: 5   NEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQV 64

Query: 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG 210
           H  +   G   ++ V ++++ +YG    V  +R+VF+ M  RNVVSWTS++V ++   + 
Sbjct: 65  HGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEP 124

Query: 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270
            E +++++    +     N++ ++ VI++C  L     G+   G VV+SG E    V ++
Sbjct: 125 EEVIDIYKGMRGEGVG-CNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENS 183

Query: 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330
           L+ M    G+V+Y++ +F+++S    +++ S+    A+ G    S  +F+ M     + N
Sbjct: 184 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVN 243

Query: 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR----TGRLDEA 386
             T   +L    H      G + +  +  K G         CV + L R     GR  EA
Sbjct: 244 STTVSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSVVCVCNTLLRMYAGAGRSVEA 298

Query: 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446
             + K +   P    + W +L+++    GR   A+     +I S + V   YVT ++  A
Sbjct: 299 NLVFKQM---PTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV--NYVTFTSALA 353



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 99/200 (49%), Gaps = 5/200 (2%)

Query: 189 MGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV- 247
           M  RN VSW +++    +     E +E FR+       +P+  ++AS++ AC   G +  
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKM-CDLGIKPSSFVIASLVTACGRSGSMFR 59

Query: 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307
            G   HG V +SG   +  V++A++ +Y   G V+ S KVF  + + +VV++TS++VG +
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI-QHLDSMYRKYGIIPD 366
             G     +D++  M   G+  N+ +   V+ +C    L DE + + +     K G+   
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL--LKDESLGRQIIGQVVKSGLESK 177

Query: 367 AKHYTCVVDMLGRTGRLDEA 386
                 ++ MLG  G +D A
Sbjct: 178 LAVENSLISMLGSMGNVDYA 197


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 204/584 (34%), Positives = 326/584 (55%), Gaps = 20/584 (3%)

Query: 37  LQECKHLISLA---SVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93
           L  C  L S+      H+ I+K     ++   N L + Y +      + + F E  E +V
Sbjct: 88  LNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDV 147

Query: 94  VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153
           +S+T++++   + G+  + L LF +ML   V PN+FT  +V+  CS +     G Q+H+ 
Sbjct: 148 ISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSL 207

Query: 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ------- 206
               G + NL + +SLV +Y KC  +D A+ +F+ M  +N+++W ++I  HAQ       
Sbjct: 208 STKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKD 267

Query: 207 --NAQ--GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262
             +AQ  G EAL M+ + N   R +P+   L+S++  C+ L  L  G+  H   ++SG  
Sbjct: 268 NFSAQQTGTEALGMYLKLNRSGR-KPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFL 326

Query: 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322
            + VV +ALVDMY KCGS+  + K F  +S  +++++TSMI   A++G  + +L LF +M
Sbjct: 327 SDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDM 386

Query: 323 ISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382
              G +PN +TFVGVL ACSH+G+VDE +++ + M ++Y I P   HY C+VDM  R GR
Sbjct: 387 RLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGR 446

Query: 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442
           LDEA+ + K + V+P+    +W  L++  R HG  ++   A+ QL++   +    YV L 
Sbjct: 447 LDEAFDVIKRMDVEPN--EFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLL 504

Query: 443 NTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLR 502
           N Y  A  WE+V  +R  MK   + K    S + I+ + ++F   N L    +E+ +LL 
Sbjct: 505 NMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLN 564

Query: 503 ELERKMKERGYVGGKTGLVFVDVEDEAREEIVG---LHSERLALAFGLISIPKGITIRIM 559
           +L  + K  GY   +   V  D E+EA E+       HSE+LA+ FGL++ P G  IR++
Sbjct: 565 DLVDRAKSLGYEQLENMEVIDDEEEEAEEKAFSSAVYHSEKLAVTFGLLNTPIGAPIRVI 624

Query: 560 KNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603
           K++ MC+DCHD  K++S    R  +++D  R H F NG CSC D
Sbjct: 625 KSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRLHKFVNGQCSCAD 668



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 200/386 (51%), Gaps = 18/386 (4%)

Query: 49  VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108
           VH+ ++K+G     F ++ L+N Y +      AR++FD +   NVV +T+LM GY+   Q
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 109 PQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168
           P++A+ +F  ML +  +P+ FT +  + ACS L  +  GKQ H  I  +   ++  + ++
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228
           L  +Y K   +D + + F   G ++V+SWT+II A   N +    L +F E  +++ + P
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVE-P 180

Query: 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288
           N   L SV++ C+++     G   H +  + G E N  + ++LV +Y KCG ++ +  +F
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 289 NRISNPSVVTYTSMIVGAAK-----------YGLGRFSLDLFNEMISRGIKPNDVTFVGV 337
           NR+   +++T+ +MI G A+              G  +L ++ ++   G KP+  T   +
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSI 300

Query: 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397
           L  CS    +++G + + +   K G + D    T +VDM  + G ++ A K      +D 
Sbjct: 301 LTVCSRLAALEQG-EQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAF----LDM 355

Query: 398 DGGPLL-WGTLLSASRLHGRVDIAVE 422
               L+ W +++++   HG+   A++
Sbjct: 356 STRTLISWTSMITSFARHGQSQHALQ 381



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 8/215 (3%)

Query: 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYG 310
           + H  V+++G      V S LV++YAKCG +  + KVF+ +   +VV +T+++ G  +  
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370
               ++++F +M+  G  P++ T    L+ACS    +  G Q   +   KY I  D+   
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQ-FHAFIIKYRISHDSSIG 119

Query: 371 TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA----VEASNQ 426
             +  +  + G LD +    K+ +   +   + W T++SA   +GR  +     +E   +
Sbjct: 120 NALCSLYSKFGSLDSS---VKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFE 176

Query: 427 LIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461
            +E N     + ++L +T   +     VHSL +++
Sbjct: 177 NVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKL 211


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 306/584 (52%), Gaps = 19/584 (3%)

Query: 31  AHFIQQLQEC--KHLISLAS-VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDE 87
           A ++  LQ C     + L   +HS ++++   +N      + N YVR    + A+ +FD 
Sbjct: 189 AVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDG 248

Query: 88  MLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147
           M   N V++T LM GY    + ++AL LF +M    V  +EF F+ V+K C  L D   G
Sbjct: 249 MDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMG 308

Query: 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207
           +QIH+HI   G +  + V + LVD Y KC D++ A R F  +   N VSW+++I   +Q+
Sbjct: 309 RQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQS 368

Query: 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267
            +  + +++F     +     N  +  SV  ACA+   L  G  AHG  ++ G       
Sbjct: 369 GRLEDCIKIFTSLRSEGV-VLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYG 427

Query: 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327
            SA+V MY+KCG ++Y+ + F  I  P  V +T++I G A +G    +L  F  M S G+
Sbjct: 428 ESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGV 487

Query: 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387
           +PN VTF+ VL ACSHSGLV E  Q+L SM R YG+ P   HY C++D   R G L EA 
Sbjct: 488 RPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEAL 547

Query: 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447
           +L   +  +PD   + W +LL     H  + +   A+  L   +      Y+ L N Y+ 
Sbjct: 548 ELINRMPFEPDA--MSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSA 605

Query: 448 AGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERK 507
            G+WE    +R  M    + KE  CSW+ ++ Q + F  G+    +   + S L E +  
Sbjct: 606 FGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCS 665

Query: 508 MKERGYVGGKTGLVFVDVEDE------AREEIVGLHSERLALAFGLISIPKGITIRIMKN 561
           + +       + +  ++ ED+      AR+E +  HSE+LA+AFGLIS      I + KN
Sbjct: 666 VID-------SPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPILVFKN 718

Query: 562 LRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605
           LR CRDCH+  K +S +  R  VVRD  RFHHF++G CSC D+W
Sbjct: 719 LRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 205/416 (49%), Gaps = 23/416 (5%)

Query: 17  SLTRQNKRSSCH------------TKAHFIQQLQE-CKHLISLAS---VHSEILKSGFLS 60
           SL++Q K    H               H  Q L E C  L SLA    +H  + ++    
Sbjct: 61  SLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNP 120

Query: 61  NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKML 120
           +    N L+  Y         +++FDEML  N+VS+  +++ Y   G+ + A+ LF  M 
Sbjct: 121 SGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQ 180

Query: 121 GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180
            + + PN   + +++++C   + L  GKQIH+H+       N+ V +++ +MY +C  ++
Sbjct: 181 ASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLE 240

Query: 181 GARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240
           GA+ VFD M  +N V+WT ++V + Q  +   ALE+F     +  +  ++ + + V+  C
Sbjct: 241 GAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVEL-DEFVFSIVLKVC 299

Query: 241 ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYT 300
             L     G+  H  +V+ G E    V + LVD Y KCG +  + + F RIS P+ V+++
Sbjct: 300 CGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWS 359

Query: 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ-HLDSMYR 359
           ++I G ++ G     + +F  + S G+  N   +  V  AC+    ++ G Q H D++ R
Sbjct: 360 ALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKR 419

Query: 360 KYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415
             G++      + +V M  + GRLD A +  +SI  +PD   + W  ++S    HG
Sbjct: 420 --GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDA--VAWTAIISGYAYHG 470


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,940,321,412
Number of Sequences: 23463169
Number of extensions: 363730412
Number of successful extensions: 1002671
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9166
Number of HSP's successfully gapped in prelim test: 2484
Number of HSP's that attempted gapping in prelim test: 839019
Number of HSP's gapped (non-prelim): 55080
length of query: 605
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 456
effective length of database: 8,863,183,186
effective search space: 4041611532816
effective search space used: 4041611532816
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)