Query 039695
Match_columns 605
No_of_seqs 752 out of 4249
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 5E-123 1E-127 1009.9 67.6 600 2-605 94-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 9E-119 2E-123 999.2 66.3 596 1-603 259-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-76 4.2E-81 659.4 44.5 579 2-598 58-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8.2E-64 1.8E-68 547.4 55.8 462 4-471 379-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 5E-61 1.1E-65 525.6 51.8 521 27-583 367-911 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-60 2.6E-65 520.3 42.0 486 90-598 84-581 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-26 3.1E-31 263.6 51.1 450 4-466 406-868 (899)
8 PF14432 DYW_deaminase: DYW fa 100.0 3.8E-31 8.3E-36 213.0 7.5 106 471-595 2-116 (116)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-26 1.3E-30 258.5 50.9 450 3-465 371-833 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 1.2E-20 2.7E-25 184.1 34.0 444 3-459 56-514 (966)
11 PRK11447 cellulose synthase su 99.9 1.3E-18 2.8E-23 199.8 49.9 448 4-466 121-702 (1157)
12 PRK11447 cellulose synthase su 99.9 2.7E-18 5.9E-23 197.1 51.8 404 44-463 286-739 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.3E-23 170.7 30.9 362 93-467 116-488 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-17 5.6E-22 177.6 43.6 391 65-464 130-571 (615)
15 PRK11788 tetratricopeptide rep 99.8 1E-18 2.2E-23 178.9 30.0 297 138-471 45-354 (389)
16 PRK09782 bacteriophage N4 rece 99.8 4.2E-16 9.1E-21 171.4 48.7 446 3-466 86-708 (987)
17 PRK11788 tetratricopeptide rep 99.8 5.9E-18 1.3E-22 173.2 32.3 293 99-429 41-346 (389)
18 PRK15174 Vi polysaccharide exp 99.8 4.6E-17 9.9E-22 175.1 39.9 351 74-435 17-386 (656)
19 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.8E-21 175.3 42.9 393 65-466 18-458 (765)
20 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.8E-21 171.6 36.4 329 128-466 42-383 (656)
21 PRK10049 pgaA outer membrane p 99.8 2.2E-15 4.8E-20 165.6 45.8 396 33-437 21-463 (765)
22 PRK14574 hmsH outer membrane p 99.8 9.6E-15 2.1E-19 157.6 43.8 395 67-466 73-515 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.5E-14 3.1E-19 159.4 43.9 446 2-467 254-743 (987)
24 TIGR00990 3a0801s09 mitochondr 99.8 7.3E-15 1.6E-19 158.6 38.7 359 95-465 129-538 (615)
25 KOG4422 Uncharacterized conser 99.8 2.5E-14 5.4E-19 134.7 36.1 311 4-330 124-467 (625)
26 PRK14574 hmsH outer membrane p 99.7 6.8E-14 1.5E-18 151.1 44.1 422 5-437 44-520 (822)
27 KOG2002 TPR-containing nuclear 99.7 1.6E-12 3.5E-17 134.7 37.4 400 59-466 267-747 (1018)
28 KOG0495 HAT repeat protein [RN 99.6 2.7E-10 5.8E-15 113.4 43.6 409 54-478 471-892 (913)
29 KOG2076 RNA polymerase III tra 99.6 6.3E-12 1.4E-16 129.5 32.9 330 141-475 152-523 (895)
30 PF13429 TPR_15: Tetratricopep 99.6 5.4E-15 1.2E-19 143.4 9.9 255 201-463 15-276 (280)
31 KOG2002 TPR-containing nuclear 99.6 1.1E-10 2.3E-15 121.5 40.4 367 91-466 268-677 (1018)
32 KOG4422 Uncharacterized conser 99.5 5.6E-10 1.2E-14 105.8 37.1 405 41-466 129-592 (625)
33 PRK10747 putative protoheme IX 99.5 2.7E-11 5.8E-16 123.1 29.7 285 106-431 97-391 (398)
34 KOG2003 TPR repeat-containing 99.5 4E-11 8.7E-16 114.0 27.6 269 173-450 429-709 (840)
35 KOG0495 HAT repeat protein [RN 99.5 2.6E-09 5.6E-14 106.6 40.6 422 7-442 452-892 (913)
36 PF13429 TPR_15: Tetratricopep 99.5 2.8E-13 6E-18 131.4 12.6 254 100-357 15-274 (280)
37 PRK10747 putative protoheme IX 99.5 4.3E-11 9.3E-16 121.6 29.0 276 176-463 97-389 (398)
38 KOG1126 DNA-binding cell divis 99.5 1.7E-11 3.7E-16 122.7 23.3 276 143-466 334-622 (638)
39 KOG2003 TPR repeat-containing 99.5 4.3E-11 9.4E-16 113.8 24.8 409 48-465 222-690 (840)
40 KOG1155 Anaphase-promoting com 99.5 3.9E-10 8.5E-15 108.0 31.3 193 265-461 330-533 (559)
41 TIGR00540 hemY_coli hemY prote 99.5 2.6E-10 5.6E-15 116.6 32.9 290 105-429 96-398 (409)
42 KOG0547 Translocase of outer m 99.4 3.6E-10 7.8E-15 109.0 30.6 385 69-463 122-565 (606)
43 TIGR00540 hemY_coli hemY prote 99.4 1.3E-10 2.7E-15 118.9 29.6 280 74-392 96-395 (409)
44 KOG2076 RNA polymerase III tra 99.4 8.7E-10 1.9E-14 114.1 34.9 315 74-394 151-510 (895)
45 KOG1915 Cell cycle control pro 99.4 1.7E-08 3.8E-13 97.1 37.8 402 60-474 71-510 (677)
46 COG2956 Predicted N-acetylgluc 99.4 7.6E-10 1.6E-14 101.4 26.3 216 106-324 48-277 (389)
47 PF13041 PPR_2: PPR repeat fam 99.4 1.6E-12 3.4E-17 88.7 6.2 50 91-140 1-50 (50)
48 KOG1126 DNA-binding cell divis 99.3 1E-10 2.2E-15 117.2 20.1 246 208-464 333-586 (638)
49 KOG1173 Anaphase-promoting com 99.3 3.8E-09 8.2E-14 104.0 30.3 393 60-463 47-517 (611)
50 TIGR02521 type_IV_pilW type IV 99.3 2.4E-10 5.2E-15 107.6 22.1 200 263-464 29-232 (234)
51 KOG4318 Bicoid mRNA stability 99.3 1.9E-09 4.2E-14 111.0 28.8 89 16-111 11-101 (1088)
52 PF13041 PPR_2: PPR repeat fam 99.3 3.9E-12 8.5E-17 86.8 6.5 50 294-343 1-50 (50)
53 KOG4318 Bicoid mRNA stability 99.3 7.7E-11 1.7E-15 121.0 18.6 263 215-520 11-274 (1088)
54 KOG1155 Anaphase-promoting com 99.3 1.9E-08 4.1E-13 96.7 33.3 314 138-463 174-494 (559)
55 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.6E-13 95.7 32.2 367 61-436 96-506 (564)
56 KOG1915 Cell cycle control pro 99.3 3.2E-07 6.9E-12 88.7 41.2 444 7-463 85-584 (677)
57 COG3071 HemY Uncharacterized e 99.3 1.7E-08 3.7E-13 95.7 31.9 294 98-429 87-389 (400)
58 COG2956 Predicted N-acetylgluc 99.2 1.9E-08 4.1E-13 92.5 25.6 215 141-358 48-276 (389)
59 KOG1840 Kinesin light chain [C 99.2 7.1E-09 1.5E-13 105.2 25.2 232 231-462 200-477 (508)
60 KOG4162 Predicted calmodulin-b 99.2 1.9E-07 4.2E-12 95.6 34.7 400 55-466 316-785 (799)
61 PRK12370 invasion protein regu 99.2 5.1E-09 1.1E-13 111.3 24.6 263 192-465 254-536 (553)
62 COG3071 HemY Uncharacterized e 99.2 3.3E-08 7.2E-13 93.7 26.9 278 176-463 97-389 (400)
63 KOG0547 Translocase of outer m 99.2 2.8E-07 6E-12 89.5 32.4 400 4-431 124-567 (606)
64 KOG2376 Signal recognition par 99.2 1.8E-06 4E-11 86.0 38.6 433 5-458 22-514 (652)
65 TIGR02521 type_IV_pilW type IV 99.1 2E-08 4.3E-13 94.4 22.7 191 93-288 31-226 (234)
66 PRK12370 invasion protein regu 99.1 8.7E-09 1.9E-13 109.5 21.5 213 244-464 275-502 (553)
67 KOG1129 TPR repeat-containing 99.1 8.1E-09 1.7E-13 94.8 16.5 231 198-466 227-460 (478)
68 KOG2047 mRNA splicing factor [ 99.1 1.2E-05 2.6E-10 80.9 39.8 439 26-474 118-697 (835)
69 KOG1173 Anaphase-promoting com 99.1 2.4E-07 5.2E-12 91.6 27.1 278 159-442 240-530 (611)
70 KOG2047 mRNA splicing factor [ 99.0 1.9E-05 4.2E-10 79.6 40.0 395 61-462 137-613 (835)
71 PRK11189 lipoprotein NlpI; Pro 99.0 3.5E-08 7.6E-13 96.0 20.2 213 245-466 41-267 (296)
72 COG3063 PilF Tfp pilus assembl 99.0 4.1E-08 9E-13 86.3 17.6 163 299-466 38-204 (250)
73 KOG1840 Kinesin light chain [C 99.0 1.4E-06 3E-11 88.7 30.8 237 164-429 200-478 (508)
74 KOG1129 TPR repeat-containing 99.0 1.9E-08 4.2E-13 92.4 15.4 197 264-467 222-427 (478)
75 PRK11189 lipoprotein NlpI; Pro 98.9 5.5E-07 1.2E-11 87.7 24.0 220 209-436 41-271 (296)
76 KOG1125 TPR repeat-containing 98.9 4.4E-08 9.6E-13 97.1 15.9 221 240-464 295-527 (579)
77 KOG4162 Predicted calmodulin-b 98.9 4.2E-05 9.1E-10 78.9 36.0 402 26-436 319-789 (799)
78 KOG1156 N-terminal acetyltrans 98.9 6.3E-05 1.4E-09 76.2 36.2 382 73-466 52-470 (700)
79 PF12569 NARP1: NMDA receptor- 98.9 1.2E-06 2.7E-11 90.2 25.0 256 171-466 12-293 (517)
80 PF12569 NARP1: NMDA receptor- 98.8 7.1E-06 1.5E-10 84.7 28.1 302 135-463 11-333 (517)
81 PF04733 Coatomer_E: Coatomer 98.8 1.1E-06 2.5E-11 84.2 20.7 226 197-435 38-270 (290)
82 KOG3785 Uncharacterized conser 98.8 4.1E-06 8.9E-11 78.2 23.2 381 69-468 64-494 (557)
83 KOG1156 N-terminal acetyltrans 98.8 0.00037 8E-09 70.8 39.1 442 8-463 20-510 (700)
84 KOG3785 Uncharacterized conser 98.8 0.00015 3.2E-09 68.1 32.8 240 210-470 270-520 (557)
85 cd05804 StaR_like StaR_like; a 98.8 1.9E-05 4.1E-10 79.7 30.3 200 266-465 115-337 (355)
86 KOG0985 Vesicle coat protein c 98.8 6.5E-05 1.4E-09 79.5 33.6 158 279-461 1089-1246(1666)
87 PF04733 Coatomer_E: Coatomer 98.8 1.6E-07 3.5E-12 90.0 14.2 247 203-464 10-265 (290)
88 KOG0985 Vesicle coat protein c 98.8 3.9E-05 8.5E-10 81.0 31.9 366 47-463 967-1369(1666)
89 KOG0548 Molecular co-chaperone 98.7 7.6E-06 1.7E-10 80.9 24.9 374 71-465 11-456 (539)
90 KOG1174 Anaphase-promoting com 98.7 1.8E-05 3.8E-10 75.7 25.9 264 56-324 226-499 (564)
91 KOG0624 dsRNA-activated protei 98.7 0.00018 3.8E-09 67.4 31.5 346 67-468 43-398 (504)
92 PRK04841 transcriptional regul 98.7 0.00014 3.1E-09 83.2 38.5 326 139-465 385-761 (903)
93 KOG1070 rRNA processing protei 98.7 2.4E-06 5.3E-11 92.8 21.1 202 262-467 1455-1666(1710)
94 KOG0624 dsRNA-activated protei 98.7 5.6E-05 1.2E-09 70.6 27.1 291 169-466 44-372 (504)
95 KOG3616 Selective LIM binding 98.7 3.1E-05 6.7E-10 79.0 27.5 344 66-459 561-932 (1636)
96 cd05804 StaR_like StaR_like; a 98.7 8.8E-05 1.9E-09 74.8 31.7 195 95-292 8-213 (355)
97 KOG4340 Uncharacterized conser 98.6 2.4E-05 5.2E-10 71.6 23.3 189 268-463 244-442 (459)
98 PF12854 PPR_1: PPR repeat 98.6 5.3E-08 1.2E-12 59.5 4.3 33 158-190 2-34 (34)
99 PF12854 PPR_1: PPR repeat 98.6 4.5E-08 9.7E-13 59.8 3.8 33 57-89 2-34 (34)
100 TIGR03302 OM_YfiO outer membra 98.6 6E-06 1.3E-10 77.9 19.6 181 265-465 33-233 (235)
101 KOG2376 Signal recognition par 98.6 0.00098 2.1E-08 67.1 35.1 393 50-465 35-488 (652)
102 KOG3616 Selective LIM binding 98.6 0.00021 4.5E-09 73.2 30.6 259 174-466 743-1026(1636)
103 COG3063 PilF Tfp pilus assembl 98.6 1.4E-05 2.9E-10 70.8 19.2 193 268-463 38-235 (250)
104 KOG4340 Uncharacterized conser 98.5 9.7E-06 2.1E-10 74.0 18.2 303 131-460 13-335 (459)
105 PRK10370 formate-dependent nit 98.5 7.7E-06 1.7E-10 74.1 16.4 119 344-466 52-175 (198)
106 PRK15359 type III secretion sy 98.5 3.8E-06 8.2E-11 71.9 13.2 108 334-445 27-136 (144)
107 PLN02789 farnesyltranstransfer 98.5 5.2E-05 1.1E-09 73.9 22.4 145 313-462 125-300 (320)
108 PRK15359 type III secretion sy 98.5 3.1E-06 6.8E-11 72.5 12.3 102 362-466 21-123 (144)
109 KOG1128 Uncharacterized conser 98.4 1.1E-05 2.4E-10 82.6 16.7 220 159-463 394-615 (777)
110 KOG1128 Uncharacterized conser 98.4 1.7E-05 3.8E-10 81.2 18.0 191 260-466 393-584 (777)
111 PRK15363 pathogenicity island 98.4 9.1E-06 2E-10 68.4 13.2 97 367-464 35-132 (157)
112 KOG3617 WD40 and TPR repeat-co 98.4 0.0016 3.4E-08 68.0 31.2 358 61-459 725-1169(1416)
113 PRK10370 formate-dependent nit 98.4 3.3E-05 7.2E-10 70.0 17.7 155 272-439 23-182 (198)
114 PRK15179 Vi polysaccharide bio 98.4 4.2E-05 9.2E-10 82.1 21.1 140 295-440 85-227 (694)
115 KOG1127 TPR repeat-containing 98.3 0.00022 4.7E-09 75.8 24.5 394 47-460 476-909 (1238)
116 PRK04841 transcriptional regul 98.3 0.0015 3.3E-08 74.8 33.8 370 64-434 343-764 (903)
117 COG4783 Putative Zn-dependent 98.3 0.0006 1.3E-08 67.3 25.4 138 305-464 315-454 (484)
118 KOG1070 rRNA processing protei 98.3 0.00015 3.2E-09 79.5 22.2 225 229-458 1457-1694(1710)
119 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3.1E-11 54.1 4.3 35 94-128 1-35 (35)
120 TIGR02552 LcrH_SycD type III s 98.3 1.3E-05 2.8E-10 68.1 11.6 103 362-465 11-115 (135)
121 KOG1127 TPR repeat-containing 98.3 0.0022 4.8E-08 68.5 29.4 391 60-461 524-993 (1238)
122 KOG0548 Molecular co-chaperone 98.3 0.0003 6.5E-09 70.0 22.0 347 101-465 10-422 (539)
123 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.2E-11 53.4 4.6 35 297-331 1-35 (35)
124 KOG1125 TPR repeat-containing 98.2 8.7E-05 1.9E-09 74.3 17.7 244 204-456 295-563 (579)
125 COG4783 Putative Zn-dependent 98.2 0.00052 1.1E-08 67.7 22.6 177 280-463 252-436 (484)
126 TIGR03302 OM_YfiO outer membra 98.2 0.00014 2.9E-09 68.6 17.8 184 228-432 31-234 (235)
127 PRK14720 transcript cleavage f 98.2 0.0011 2.3E-08 72.4 25.8 167 129-325 32-198 (906)
128 KOG3617 WD40 and TPR repeat-co 98.1 0.0026 5.6E-08 66.5 26.6 157 83-255 716-883 (1416)
129 PF13812 PPR_3: Pentatricopept 98.1 3.8E-06 8.3E-11 51.7 4.2 34 93-126 1-34 (34)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.9E-05 2.1E-09 73.4 15.4 125 332-462 170-295 (395)
131 PLN02789 farnesyltranstransfer 98.1 0.0012 2.6E-08 64.4 22.6 203 202-413 45-267 (320)
132 KOG1914 mRNA cleavage and poly 98.1 0.016 3.5E-07 58.1 30.5 119 347-467 347-467 (656)
133 COG5010 TadD Flp pilus assembl 98.1 0.00018 4E-09 65.2 15.0 151 272-426 73-227 (257)
134 PF13812 PPR_3: Pentatricopept 98.1 7.3E-06 1.6E-10 50.4 4.5 33 297-329 2-34 (34)
135 PRK15179 Vi polysaccharide bio 98.1 0.00079 1.7E-08 72.5 22.3 142 261-409 82-230 (694)
136 KOG3081 Vesicle coat complex C 98.0 0.0054 1.2E-07 55.9 23.6 176 253-435 96-276 (299)
137 COG5010 TadD Flp pilus assembl 98.0 0.00084 1.8E-08 61.0 17.9 151 303-457 73-224 (257)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00023 5E-09 70.8 15.7 129 266-398 170-299 (395)
139 KOG3060 Uncharacterized conser 97.9 0.001 2.2E-08 60.0 16.3 181 278-465 25-221 (289)
140 cd00189 TPR Tetratricopeptide 97.9 0.00015 3.2E-09 56.6 10.1 94 370-464 3-97 (100)
141 TIGR02552 LcrH_SycD type III s 97.9 0.00039 8.5E-09 58.9 13.1 113 318-436 5-120 (135)
142 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.9E-10 47.4 3.4 31 94-124 1-31 (31)
143 PF01535 PPR: PPR repeat; Int 97.9 2E-05 4.3E-10 47.2 3.5 31 297-327 1-31 (31)
144 PRK14720 transcript cleavage f 97.8 0.0035 7.6E-08 68.5 22.7 219 56-307 24-268 (906)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0005 1.1E-08 59.1 13.5 116 344-460 24-143 (145)
146 PF13414 TPR_11: TPR repeat; P 97.8 6E-05 1.3E-09 55.3 5.9 64 401-464 3-67 (69)
147 PF04840 Vps16_C: Vps16, C-ter 97.8 0.022 4.8E-07 55.5 25.2 105 272-393 184-288 (319)
148 PF09976 TPR_21: Tetratricopep 97.8 0.0021 4.6E-08 55.2 16.0 126 299-427 15-144 (145)
149 KOG3081 Vesicle coat complex C 97.8 0.0073 1.6E-07 55.1 19.5 110 273-385 145-259 (299)
150 KOG2053 Mitochondrial inherita 97.8 0.09 2E-06 56.2 38.2 68 403-470 438-508 (932)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00049 1.1E-08 56.7 10.8 97 369-465 4-106 (119)
152 KOG3060 Uncharacterized conser 97.7 0.012 2.6E-07 53.4 19.2 165 271-439 58-229 (289)
153 PRK15331 chaperone protein Sic 97.7 0.00049 1.1E-08 58.4 9.9 102 362-463 31-133 (165)
154 PF13432 TPR_16: Tetratricopep 97.6 0.00014 3.1E-09 52.5 5.8 59 407-465 3-61 (65)
155 PF12895 Apc3: Anaphase-promot 97.6 6.8E-05 1.5E-09 57.5 4.0 80 380-460 2-83 (84)
156 PLN03088 SGT1, suppressor of 97.6 0.00046 1E-08 68.9 10.2 107 338-448 9-117 (356)
157 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.002 4.3E-08 53.0 12.1 106 333-438 4-113 (119)
158 KOG0553 TPR repeat-containing 97.5 0.00097 2.1E-08 61.8 10.3 98 341-442 91-190 (304)
159 CHL00033 ycf3 photosystem I as 97.5 0.0015 3.2E-08 57.8 11.3 95 367-461 35-139 (168)
160 PLN03088 SGT1, suppressor of 97.5 0.0016 3.5E-08 65.1 12.7 92 303-398 9-102 (356)
161 PF13432 TPR_16: Tetratricopep 97.5 0.00041 8.8E-09 50.1 6.3 62 373-435 3-65 (65)
162 PRK02603 photosystem I assembl 97.4 0.0023 4.9E-08 56.8 11.8 84 367-450 35-121 (172)
163 PF14559 TPR_19: Tetratricopep 97.4 0.00026 5.7E-09 51.6 4.3 54 412-465 2-55 (68)
164 PRK02603 photosystem I assembl 97.4 0.0051 1.1E-07 54.5 13.4 129 296-450 35-166 (172)
165 PF13371 TPR_9: Tetratricopept 97.3 0.00081 1.8E-08 49.8 6.6 59 408-466 2-60 (73)
166 KOG1538 Uncharacterized conser 97.3 0.025 5.3E-07 57.9 18.6 199 130-394 600-800 (1081)
167 PF08579 RPM2: Mitochondrial r 97.3 0.004 8.7E-08 48.9 10.3 81 95-175 27-116 (120)
168 KOG0550 Molecular chaperone (D 97.3 0.0071 1.5E-07 58.5 13.8 267 171-466 57-352 (486)
169 cd00189 TPR Tetratricopeptide 97.3 0.0029 6.3E-08 49.0 9.9 88 341-432 10-99 (100)
170 PF05843 Suf: Suppressor of fo 97.3 0.0078 1.7E-07 58.0 14.4 142 94-240 2-150 (280)
171 PRK10866 outer membrane biogen 97.2 0.082 1.8E-06 49.6 20.2 173 271-462 38-239 (243)
172 KOG0553 TPR repeat-containing 97.2 0.0012 2.6E-08 61.2 7.6 91 375-466 89-180 (304)
173 PF10037 MRP-S27: Mitochondria 97.2 0.0037 8.1E-08 62.7 11.6 120 57-176 61-186 (429)
174 PF06239 ECSIT: Evolutionarily 97.2 0.0035 7.7E-08 55.6 10.0 89 293-382 44-153 (228)
175 COG4235 Cytochrome c biogenesi 97.2 0.0035 7.6E-08 58.6 10.5 106 364-470 152-262 (287)
176 PF05843 Suf: Suppressor of fo 97.2 0.025 5.3E-07 54.5 16.7 135 298-435 3-141 (280)
177 PF12895 Apc3: Anaphase-promot 97.2 0.0018 4E-08 49.5 7.2 80 309-392 2-83 (84)
178 PRK10153 DNA-binding transcrip 97.1 0.016 3.4E-07 60.7 16.1 65 401-466 420-484 (517)
179 PRK10153 DNA-binding transcrip 97.1 0.022 4.7E-07 59.7 16.9 140 293-436 334-488 (517)
180 PF14938 SNAP: Soluble NSF att 97.1 0.29 6.2E-06 47.3 24.3 96 299-394 158-264 (282)
181 CHL00033 ycf3 photosystem I as 97.1 0.011 2.4E-07 52.1 12.7 99 335-434 39-153 (168)
182 PF13431 TPR_17: Tetratricopep 97.1 0.00042 9.2E-09 42.2 2.1 32 424-455 2-33 (34)
183 PF10037 MRP-S27: Mitochondria 97.0 0.01 2.3E-07 59.5 12.9 117 126-243 64-186 (429)
184 PF13281 DUF4071: Domain of un 97.0 0.061 1.3E-06 53.0 17.7 163 270-435 146-339 (374)
185 PF08579 RPM2: Mitochondrial r 97.0 0.01 2.3E-07 46.6 9.9 79 300-379 29-116 (120)
186 PF04840 Vps16_C: Vps16, C-ter 97.0 0.39 8.5E-06 46.9 24.3 111 332-461 178-288 (319)
187 PF06239 ECSIT: Evolutionarily 97.0 0.015 3.2E-07 51.8 11.9 105 227-346 44-153 (228)
188 PRK15363 pathogenicity island 97.0 0.031 6.8E-07 47.4 13.2 87 341-431 45-133 (157)
189 PF13414 TPR_11: TPR repeat; P 97.0 0.002 4.4E-08 47.0 5.6 66 366-432 2-69 (69)
190 PF14938 SNAP: Soluble NSF att 97.0 0.058 1.3E-06 52.2 17.2 56 168-223 119-184 (282)
191 PF14559 TPR_19: Tetratricopep 96.9 0.00084 1.8E-08 48.9 3.2 56 379-435 3-59 (68)
192 KOG2796 Uncharacterized conser 96.9 0.063 1.4E-06 49.0 15.2 126 97-222 181-314 (366)
193 PF12688 TPR_5: Tetratrico pep 96.8 0.014 3.1E-07 47.6 10.0 88 374-461 8-101 (120)
194 KOG1130 Predicted G-alpha GTPa 96.8 0.0095 2.1E-07 57.5 9.7 132 332-463 196-343 (639)
195 PRK10803 tol-pal system protei 96.8 0.017 3.6E-07 54.7 11.4 98 368-465 144-247 (263)
196 PF13428 TPR_14: Tetratricopep 96.8 0.0027 5.7E-08 41.5 4.3 42 402-443 2-43 (44)
197 KOG0550 Molecular chaperone (D 96.8 0.37 7.9E-06 47.2 20.0 85 305-392 258-346 (486)
198 KOG1130 Predicted G-alpha GTPa 96.7 0.02 4.2E-07 55.5 11.5 255 102-357 26-341 (639)
199 KOG2796 Uncharacterized conser 96.7 0.14 2.9E-06 46.9 15.8 232 194-433 69-318 (366)
200 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0073 1.6E-07 60.1 8.7 64 367-430 75-141 (453)
201 PF03704 BTAD: Bacterial trans 96.7 0.03 6.4E-07 48.1 11.5 63 401-463 62-124 (146)
202 PF12688 TPR_5: Tetratrico pep 96.6 0.061 1.3E-06 43.9 12.2 100 100-199 8-111 (120)
203 KOG2041 WD40 repeat protein [G 96.6 1.1 2.5E-05 46.8 25.4 30 59-88 689-718 (1189)
204 KOG1914 mRNA cleavage and poly 96.6 1 2.2E-05 45.8 35.6 161 297-460 367-535 (656)
205 KOG2280 Vacuolar assembly/sort 96.5 1.4 3E-05 46.7 27.0 114 328-459 681-794 (829)
206 KOG2280 Vacuolar assembly/sort 96.5 1.4 3.1E-05 46.6 26.3 106 272-393 691-796 (829)
207 COG3898 Uncharacterized membra 96.5 0.97 2.1E-05 44.0 27.0 302 78-394 69-390 (531)
208 COG4700 Uncharacterized protei 96.4 0.51 1.1E-05 41.0 16.7 80 304-388 132-214 (251)
209 COG4700 Uncharacterized protei 96.4 0.56 1.2E-05 40.7 17.5 134 327-463 85-221 (251)
210 PF13371 TPR_9: Tetratricopept 96.3 0.013 2.8E-07 43.2 6.2 63 375-438 3-66 (73)
211 PF13424 TPR_12: Tetratricopep 96.1 0.0099 2.2E-07 44.6 4.6 62 401-462 5-73 (78)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.8 3.9E-05 43.1 26.9 410 47-464 29-531 (660)
213 PRK10866 outer membrane biogen 96.0 1.4 3E-05 41.4 20.5 52 172-223 41-98 (243)
214 PRK10803 tol-pal system protei 95.9 0.11 2.4E-06 49.2 11.6 92 344-435 156-251 (263)
215 KOG3941 Intermediate in Toll s 95.9 0.072 1.6E-06 49.1 9.6 111 283-394 52-186 (406)
216 PF12921 ATP13: Mitochondrial 95.8 0.11 2.4E-06 42.9 9.9 51 326-376 47-97 (126)
217 KOG4555 TPR repeat-containing 95.8 0.076 1.6E-06 42.9 8.4 91 375-466 51-146 (175)
218 KOG1538 Uncharacterized conser 95.8 0.45 9.8E-06 49.1 15.9 43 173-220 757-799 (1081)
219 KOG0543 FKBP-type peptidyl-pro 95.8 0.09 2E-06 51.3 10.5 66 401-466 257-322 (397)
220 PF13525 YfiO: Outer membrane 95.7 0.57 1.2E-05 42.7 15.0 50 407-456 147-199 (203)
221 PF04184 ST7: ST7 protein; In 95.6 1.2 2.6E-05 45.1 17.6 99 337-435 265-380 (539)
222 KOG2053 Mitochondrial inherita 95.6 4.4 9.5E-05 44.0 42.8 214 5-224 19-256 (932)
223 COG3898 Uncharacterized membra 95.6 2.5 5.5E-05 41.3 27.3 211 242-464 166-392 (531)
224 KOG1920 IkappaB kinase complex 95.5 2 4.4E-05 48.0 20.0 158 177-394 894-1053(1265)
225 PF13424 TPR_12: Tetratricopep 95.3 0.024 5.3E-07 42.4 4.0 64 367-430 5-75 (78)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.12 2.7E-06 51.6 9.6 61 330-393 74-138 (453)
227 PF09205 DUF1955: Domain of un 95.2 0.55 1.2E-05 38.3 11.2 139 308-467 14-152 (161)
228 KOG0543 FKBP-type peptidyl-pro 95.2 0.28 6.1E-06 48.0 11.5 139 303-464 215-355 (397)
229 PF13512 TPR_18: Tetratricopep 95.2 0.55 1.2E-05 39.3 11.7 63 374-436 17-82 (142)
230 PRK11619 lytic murein transgly 95.1 6.1 0.00013 42.9 31.6 116 310-428 255-373 (644)
231 PRK11906 transcriptional regul 95.0 0.44 9.5E-06 47.9 12.6 64 401-464 338-401 (458)
232 KOG2041 WD40 repeat protein [G 94.9 6 0.00013 41.8 29.0 152 75-254 747-902 (1189)
233 COG4235 Cytochrome c biogenesi 94.8 0.88 1.9E-05 43.0 13.4 104 328-435 153-261 (287)
234 COG0457 NrfG FOG: TPR repeat [ 94.8 3.1 6.8E-05 37.9 25.8 197 265-465 59-266 (291)
235 PF03704 BTAD: Bacterial trans 94.6 0.37 8E-06 41.2 10.1 67 302-369 68-138 (146)
236 KOG1920 IkappaB kinase complex 94.6 10 0.00022 42.8 26.0 27 164-190 791-819 (1265)
237 PF04053 Coatomer_WDAD: Coatom 94.5 0.55 1.2E-05 48.2 12.4 135 304-466 269-404 (443)
238 PF00515 TPR_1: Tetratricopept 94.4 0.081 1.8E-06 32.0 3.9 32 402-433 2-33 (34)
239 KOG1585 Protein required for f 94.3 4.2 9.2E-05 37.2 16.4 88 369-458 152-250 (308)
240 PF13281 DUF4071: Domain of un 94.2 3.4 7.5E-05 41.0 16.6 72 67-138 146-227 (374)
241 PF13525 YfiO: Outer membrane 94.2 4.2 9.2E-05 37.0 20.2 23 200-222 48-70 (203)
242 PF07719 TPR_2: Tetratricopept 94.2 0.14 2.9E-06 30.8 4.6 33 402-434 2-34 (34)
243 PF12921 ATP13: Mitochondrial 94.1 0.61 1.3E-05 38.5 9.6 97 127-241 1-99 (126)
244 KOG3941 Intermediate in Toll s 94.0 0.43 9.4E-06 44.2 9.1 111 79-189 51-185 (406)
245 PF04184 ST7: ST7 protein; In 93.9 1.5 3.3E-05 44.3 13.5 152 309-474 181-334 (539)
246 COG3118 Thioredoxin domain-con 93.9 4.9 0.00011 38.0 15.9 50 307-357 145-194 (304)
247 COG3118 Thioredoxin domain-con 93.7 3.3 7.2E-05 39.1 14.6 122 339-466 142-267 (304)
248 PRK11906 transcriptional regul 93.7 4.7 0.0001 40.9 16.6 158 297-459 252-431 (458)
249 PF08631 SPO22: Meiosis protei 93.5 7.5 0.00016 37.4 21.3 67 265-331 121-192 (278)
250 smart00299 CLH Clathrin heavy 93.5 2.8 6E-05 35.4 13.1 42 301-343 12-53 (140)
251 COG1729 Uncharacterized protei 93.5 0.62 1.4E-05 43.3 9.4 93 369-466 144-246 (262)
252 PF04097 Nic96: Nup93/Nic96; 93.4 7.4 0.00016 42.2 19.0 85 202-292 266-354 (613)
253 PF13512 TPR_18: Tetratricopep 93.4 1.8 3.9E-05 36.2 11.1 113 305-435 19-133 (142)
254 KOG1941 Acetylcholine receptor 93.4 0.82 1.8E-05 44.0 10.2 122 337-459 128-270 (518)
255 KOG2066 Vacuolar assembly/sort 93.2 14 0.00031 39.8 22.4 75 63-140 393-467 (846)
256 COG1729 Uncharacterized protei 93.1 1 2.2E-05 41.9 10.3 92 299-393 145-241 (262)
257 PF09205 DUF1955: Domain of un 92.7 4 8.6E-05 33.5 11.6 136 105-262 14-152 (161)
258 PF10300 DUF3808: Protein of u 92.5 6.9 0.00015 40.8 16.7 161 301-464 193-376 (468)
259 COG5107 RNA14 Pre-mRNA 3'-end 92.5 4 8.7E-05 40.7 13.6 127 94-222 398-530 (660)
260 COG4785 NlpI Lipoprotein NlpI, 92.1 1.2 2.6E-05 39.8 8.7 154 305-466 74-268 (297)
261 COG3629 DnrI DNA-binding trans 91.9 0.8 1.7E-05 43.3 8.1 63 401-463 153-215 (280)
262 PRK15331 chaperone protein Sic 91.5 1.3 2.8E-05 38.0 8.2 82 74-156 49-133 (165)
263 PF10300 DUF3808: Protein of u 91.5 20 0.00043 37.5 21.9 161 131-292 191-374 (468)
264 KOG2610 Uncharacterized conser 91.2 7.6 0.00016 37.3 13.5 149 309-461 116-273 (491)
265 PF13176 TPR_7: Tetratricopept 91.1 0.45 9.7E-06 29.2 3.8 26 437-462 1-26 (36)
266 PF09613 HrpB1_HrpK: Bacterial 91.1 9.2 0.0002 32.8 13.1 89 341-433 20-109 (160)
267 COG0457 NrfG FOG: TPR repeat [ 91.0 12 0.00026 33.9 25.3 198 232-433 61-268 (291)
268 COG4105 ComL DNA uptake lipopr 91.0 13 0.00029 34.5 17.7 142 298-464 36-196 (254)
269 PF13181 TPR_8: Tetratricopept 90.9 0.44 9.5E-06 28.6 3.7 31 403-433 3-33 (34)
270 PF13170 DUF4003: Protein of u 90.7 7 0.00015 37.8 13.4 139 30-170 60-224 (297)
271 smart00299 CLH Clathrin heavy 90.4 9.8 0.00021 32.0 14.9 40 99-139 13-52 (140)
272 KOG1585 Protein required for f 90.3 15 0.00032 33.9 15.4 45 164-220 92-136 (308)
273 PF13170 DUF4003: Protein of u 90.0 6.7 0.00015 38.0 12.7 62 313-375 160-225 (297)
274 PF13176 TPR_7: Tetratricopept 90.0 0.57 1.2E-05 28.7 3.6 28 403-430 1-28 (36)
275 PF07035 Mic1: Colon cancer-as 90.0 12 0.00027 32.5 13.3 133 113-258 14-148 (167)
276 KOG4234 TPR repeat-containing 89.9 1.1 2.3E-05 39.6 6.3 92 375-466 103-199 (271)
277 KOG4555 TPR repeat-containing 89.8 5.7 0.00012 32.5 9.8 87 342-431 54-145 (175)
278 PF13428 TPR_14: Tetratricopep 89.6 0.67 1.5E-05 29.9 3.9 31 436-466 2-32 (44)
279 PF07079 DUF1347: Protein of u 89.4 26 0.00056 35.4 29.6 325 61-394 127-522 (549)
280 COG3629 DnrI DNA-binding trans 89.1 2.6 5.7E-05 39.9 8.9 76 265-340 153-236 (280)
281 PF09613 HrpB1_HrpK: Bacterial 88.8 2.1 4.5E-05 36.7 7.2 54 412-465 21-74 (160)
282 KOG4570 Uncharacterized conser 88.7 5.4 0.00012 37.9 10.3 99 56-158 58-165 (418)
283 PRK11619 lytic murein transgly 88.7 41 0.00088 36.7 40.5 442 4-469 42-510 (644)
284 PF02259 FAT: FAT domain; Int 88.4 29 0.00062 34.6 17.3 70 397-466 142-215 (352)
285 PF04053 Coatomer_WDAD: Coatom 88.3 5.3 0.00012 41.1 11.3 100 72-188 328-427 (443)
286 PF07079 DUF1347: Protein of u 88.3 31 0.00067 34.9 34.7 192 266-462 299-522 (549)
287 TIGR02561 HrpB1_HrpK type III 88.3 2.1 4.6E-05 35.9 6.8 55 412-466 21-75 (153)
288 KOG2114 Vacuolar assembly/sort 88.1 45 0.00097 36.5 26.2 145 66-218 338-487 (933)
289 PRK09687 putative lyase; Provi 88.0 26 0.00056 33.7 26.9 75 262-341 203-277 (280)
290 KOG1258 mRNA processing protei 87.5 41 0.00088 35.3 33.5 381 61-449 44-489 (577)
291 COG4105 ComL DNA uptake lipopr 87.4 25 0.00054 32.8 20.4 180 265-464 35-233 (254)
292 PRK09687 putative lyase; Provi 87.3 29 0.00062 33.4 26.4 80 161-243 35-118 (280)
293 TIGR02508 type_III_yscG type I 86.6 12 0.00026 29.0 9.3 87 144-235 21-107 (115)
294 COG4649 Uncharacterized protei 86.6 9.5 0.00021 33.0 9.7 119 104-224 69-197 (221)
295 KOG2610 Uncharacterized conser 86.0 30 0.00064 33.5 13.6 149 207-357 116-273 (491)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 6.1 0.00013 30.4 7.4 62 312-375 23-84 (103)
297 PF06552 TOM20_plant: Plant sp 85.7 15 0.00032 32.2 10.7 45 417-468 96-140 (186)
298 COG1747 Uncharacterized N-term 85.3 48 0.001 34.1 20.1 90 196-291 68-157 (711)
299 PF13431 TPR_17: Tetratricopep 85.3 1.3 2.8E-05 26.8 3.0 31 152-183 3-33 (34)
300 PF02284 COX5A: Cytochrome c o 85.3 6.7 0.00015 30.5 7.5 60 314-375 28-87 (108)
301 PF10602 RPN7: 26S proteasome 85.2 9.1 0.0002 33.8 9.7 61 95-155 38-100 (177)
302 KOG4648 Uncharacterized conser 84.8 3.1 6.6E-05 39.9 6.7 47 304-352 105-152 (536)
303 PF02259 FAT: FAT domain; Int 84.8 44 0.00095 33.2 21.7 148 294-447 144-304 (352)
304 PF00637 Clathrin: Region in C 84.1 0.8 1.7E-05 38.9 2.5 84 234-320 11-94 (143)
305 COG4649 Uncharacterized protei 83.9 16 0.00036 31.6 9.9 50 140-189 70-120 (221)
306 KOG1464 COP9 signalosome, subu 83.5 39 0.00085 31.6 17.9 148 268-423 148-325 (440)
307 PF11207 DUF2989: Protein of u 83.4 7.2 0.00016 34.8 8.0 76 379-455 119-198 (203)
308 PF13374 TPR_10: Tetratricopep 83.2 2.8 6E-05 26.3 4.3 27 403-429 4-30 (42)
309 PF07719 TPR_2: Tetratricopept 83.2 1.9 4.1E-05 25.6 3.3 30 436-465 2-31 (34)
310 PF00515 TPR_1: Tetratricopept 82.7 2.1 4.4E-05 25.6 3.3 30 436-465 2-31 (34)
311 PF10602 RPN7: 26S proteasome 82.5 34 0.00074 30.2 12.2 56 267-322 38-99 (177)
312 PF07721 TPR_4: Tetratricopept 82.4 1.9 4E-05 24.1 2.7 23 437-459 3-25 (26)
313 PF14853 Fis1_TPR_C: Fis1 C-te 82.3 6.2 0.00013 26.7 5.6 32 406-437 6-37 (53)
314 PF14853 Fis1_TPR_C: Fis1 C-te 82.2 11 0.00023 25.6 6.7 50 438-513 4-53 (53)
315 KOG4648 Uncharacterized conser 81.9 3.5 7.7E-05 39.5 5.9 111 338-455 104-215 (536)
316 PRK10941 hypothetical protein; 81.8 12 0.00027 35.5 9.6 63 403-465 183-245 (269)
317 KOG0890 Protein kinase of the 81.7 1.5E+02 0.0032 37.0 24.8 314 134-466 1389-1733(2382)
318 PF13374 TPR_10: Tetratricopep 81.7 2.8 6E-05 26.2 3.8 28 436-463 3-30 (42)
319 smart00028 TPR Tetratricopepti 81.4 3.2 6.8E-05 23.5 3.9 29 404-432 4-32 (34)
320 PF13929 mRNA_stabil: mRNA sta 81.2 20 0.00043 34.1 10.4 112 312-423 144-260 (292)
321 TIGR02561 HrpB1_HrpK type III 80.8 30 0.00064 29.3 10.2 52 343-397 22-74 (153)
322 COG2976 Uncharacterized protei 80.6 42 0.0009 29.9 14.3 92 337-433 95-191 (207)
323 KOG0890 Protein kinase of the 80.5 1.6E+02 0.0035 36.7 23.7 306 98-431 1388-1732(2382)
324 PF00637 Clathrin: Region in C 80.5 0.79 1.7E-05 39.0 1.1 84 134-220 13-96 (143)
325 PF13174 TPR_6: Tetratricopept 80.4 3.3 7.2E-05 24.2 3.6 22 441-462 6-27 (33)
326 KOG4570 Uncharacterized conser 80.3 11 0.00024 36.0 8.3 98 259-360 58-164 (418)
327 PF13181 TPR_8: Tetratricopept 80.2 4 8.6E-05 24.2 3.9 29 436-464 2-30 (34)
328 PF13174 TPR_6: Tetratricopept 80.0 2.7 5.8E-05 24.6 3.1 31 404-434 3-33 (33)
329 PF07035 Mic1: Colon cancer-as 79.0 43 0.00093 29.2 12.9 32 55-86 22-53 (167)
330 KOG0276 Vesicle coat complex C 79.0 41 0.00088 35.3 12.5 148 278-460 599-746 (794)
331 KOG3807 Predicted membrane pro 78.7 25 0.00055 33.8 10.3 18 419-436 380-397 (556)
332 PF13762 MNE1: Mitochondrial s 77.6 24 0.00052 29.8 8.9 92 50-141 25-128 (145)
333 PF08631 SPO22: Meiosis protei 77.6 69 0.0015 30.8 21.9 59 165-223 86-150 (278)
334 KOG0276 Vesicle coat complex C 77.4 25 0.00055 36.8 10.5 101 72-189 647-747 (794)
335 KOG1941 Acetylcholine receptor 77.4 77 0.0017 31.2 17.0 94 196-289 85-186 (518)
336 COG3947 Response regulator con 77.3 9 0.00019 36.1 6.8 61 403-463 281-341 (361)
337 KOG3364 Membrane protein invol 76.5 18 0.0004 29.9 7.6 49 416-464 50-100 (149)
338 PF02284 COX5A: Cytochrome c o 76.1 20 0.00043 28.0 7.3 47 393-441 39-85 (108)
339 PF09477 Type_III_YscG: Bacter 76.0 37 0.0008 26.8 9.2 80 142-224 20-99 (116)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 75.8 21 0.00044 27.6 7.2 45 111-155 25-69 (103)
341 PF06552 TOM20_plant: Plant sp 75.7 11 0.00024 33.0 6.6 34 417-450 51-84 (186)
342 PF07721 TPR_4: Tetratricopept 75.3 5.8 0.00013 22.1 3.3 21 167-187 5-25 (26)
343 PHA02875 ankyrin repeat protei 75.2 1E+02 0.0022 31.5 17.2 148 170-331 72-230 (413)
344 PRK15180 Vi polysaccharide bio 75.2 20 0.00043 36.4 8.9 122 309-434 302-424 (831)
345 KOG1586 Protein required for f 74.9 70 0.0015 29.5 13.5 55 411-465 164-225 (288)
346 PRK12798 chemotaxis protein; R 74.7 1E+02 0.0022 31.2 21.1 179 278-461 125-321 (421)
347 PF11207 DUF2989: Protein of u 74.7 28 0.00062 31.2 9.0 73 313-386 123-197 (203)
348 COG4455 ImpE Protein of avirul 74.3 13 0.00028 33.6 6.7 72 371-443 5-80 (273)
349 KOG1308 Hsp70-interacting prot 74.2 2.1 4.5E-05 41.2 2.0 90 380-469 127-216 (377)
350 PF04097 Nic96: Nup93/Nic96; 72.3 1.2E+02 0.0026 33.0 15.1 56 168-223 116-181 (613)
351 KOG0292 Vesicle coat complex C 70.1 1.9E+02 0.004 32.3 22.8 151 47-222 624-781 (1202)
352 PF14561 TPR_20: Tetratricopep 70.0 15 0.00032 28.3 5.5 46 421-466 8-53 (90)
353 KOG1550 Extracellular protein 69.2 1.7E+02 0.0036 31.5 23.3 115 144-261 228-359 (552)
354 KOG2114 Vacuolar assembly/sort 69.0 1.9E+02 0.0041 32.0 26.5 75 373-450 711-786 (933)
355 PF10579 Rapsyn_N: Rapsyn N-te 67.5 18 0.0004 26.7 5.2 47 343-389 18-65 (80)
356 KOG4234 TPR repeat-containing 67.4 56 0.0012 29.3 9.0 91 343-434 107-201 (271)
357 KOG0551 Hsp90 co-chaperone CNS 67.2 36 0.00077 33.0 8.4 93 368-460 82-178 (390)
358 TIGR03504 FimV_Cterm FimV C-te 66.2 11 0.00023 24.4 3.4 27 439-465 3-29 (44)
359 smart00386 HAT HAT (Half-A-TPR 65.7 11 0.00023 21.7 3.4 29 415-443 1-29 (33)
360 PF04910 Tcf25: Transcriptiona 65.6 1.5E+02 0.0033 29.7 14.4 63 401-463 100-167 (360)
361 PF13762 MNE1: Mitochondrial s 65.1 86 0.0019 26.6 9.7 46 297-342 80-126 (145)
362 PF09670 Cas_Cas02710: CRISPR- 63.5 1.3E+02 0.0028 30.4 12.4 53 306-359 141-197 (379)
363 PF11768 DUF3312: Protein of u 63.2 69 0.0015 33.5 10.2 24 269-292 412-435 (545)
364 KOG0545 Aryl-hydrocarbon recep 63.1 1.1E+02 0.0024 28.4 10.2 61 406-466 235-295 (329)
365 KOG4077 Cytochrome c oxidase, 62.9 53 0.0012 26.9 7.4 59 314-374 67-125 (149)
366 KOG4279 Serine/threonine prote 62.8 1.4E+02 0.0031 32.5 12.3 181 252-435 185-400 (1226)
367 COG1747 Uncharacterized N-term 62.1 2E+02 0.0044 29.9 21.1 49 228-278 64-112 (711)
368 TIGR02508 type_III_yscG type I 62.0 75 0.0016 24.9 8.7 85 246-334 21-105 (115)
369 PRK13342 recombination factor 61.9 1.9E+02 0.0042 29.6 14.1 112 110-240 154-275 (413)
370 KOG1464 COP9 signalosome, subu 61.7 1.4E+02 0.0031 28.0 13.8 185 56-241 20-237 (440)
371 PF07163 Pex26: Pex26 protein; 61.0 69 0.0015 30.3 8.9 87 201-288 90-181 (309)
372 KOG2066 Vacuolar assembly/sort 61.0 2.6E+02 0.0057 30.8 21.5 31 266-296 506-536 (846)
373 PRK15180 Vi polysaccharide bio 60.5 1.1E+02 0.0024 31.3 10.7 126 343-471 301-427 (831)
374 KOG1586 Protein required for f 60.4 1.4E+02 0.0031 27.6 16.1 59 378-436 165-230 (288)
375 KOG4642 Chaperone-dependent E3 60.2 35 0.00076 31.4 6.7 81 382-463 25-106 (284)
376 KOG4507 Uncharacterized conser 59.4 28 0.0006 36.4 6.5 97 343-444 619-719 (886)
377 PHA02875 ankyrin repeat protei 58.9 1.5E+02 0.0034 30.2 12.5 16 172-187 141-156 (413)
378 PF15469 Sec5: Exocyst complex 57.9 1.4E+02 0.0029 26.5 10.9 20 338-357 93-112 (182)
379 COG4455 ImpE Protein of avirul 57.8 1.5E+02 0.0033 27.1 11.5 74 298-375 3-80 (273)
380 PF11846 DUF3366: Domain of un 57.4 47 0.001 29.8 7.4 32 401-432 144-175 (193)
381 PF14561 TPR_20: Tetratricopep 56.5 89 0.0019 23.9 8.3 61 401-461 22-85 (90)
382 PF10366 Vps39_1: Vacuolar sor 55.8 54 0.0012 26.2 6.6 28 195-222 40-67 (108)
383 KOG2063 Vacuolar assembly/sort 52.6 4E+02 0.0086 30.3 16.6 131 196-342 506-637 (877)
384 TIGR03504 FimV_Cterm FimV C-te 52.5 36 0.00079 22.0 4.1 22 303-324 6-27 (44)
385 PF11663 Toxin_YhaV: Toxin wit 52.2 17 0.00038 30.0 3.2 33 307-341 106-138 (140)
386 PF04190 DUF410: Protein of un 52.2 2.1E+02 0.0046 27.1 18.6 82 264-360 89-170 (260)
387 PF07163 Pex26: Pex26 protein; 52.0 1.4E+02 0.003 28.4 9.2 85 100-186 90-181 (309)
388 PRK13800 putative oxidoreducta 51.4 4.4E+02 0.0095 30.4 29.6 182 161-358 696-879 (897)
389 PF10345 Cohesin_load: Cohesin 51.4 3.6E+02 0.0078 29.4 32.9 57 407-463 540-605 (608)
390 PF10366 Vps39_1: Vacuolar sor 51.1 76 0.0017 25.3 6.7 28 297-324 40-67 (108)
391 KOG3364 Membrane protein invol 51.0 97 0.0021 25.9 7.2 73 364-436 29-106 (149)
392 KOG1258 mRNA processing protei 50.6 3.4E+02 0.0073 28.9 23.9 177 162-341 296-485 (577)
393 PF14669 Asp_Glu_race_2: Putat 50.5 1.9E+02 0.004 25.9 11.2 56 133-188 137-206 (233)
394 PF09986 DUF2225: Uncharacteri 50.4 1.1E+02 0.0025 27.9 8.7 65 402-466 119-196 (214)
395 PF10579 Rapsyn_N: Rapsyn N-te 49.9 35 0.00075 25.3 4.1 44 414-457 19-65 (80)
396 PF14669 Asp_Glu_race_2: Putat 49.5 1.9E+02 0.0042 25.8 13.6 93 188-291 101-207 (233)
397 KOG2396 HAT (Half-A-TPR) repea 49.1 3.3E+02 0.0072 28.4 21.3 277 79-392 268-555 (568)
398 PF07720 TPR_3: Tetratricopept 47.8 64 0.0014 19.7 4.5 29 404-432 4-34 (36)
399 PF12862 Apc5: Anaphase-promot 47.7 65 0.0014 24.8 5.8 52 412-463 9-69 (94)
400 PF11838 ERAP1_C: ERAP1-like C 47.2 2.8E+02 0.0061 27.0 17.2 83 346-430 145-230 (324)
401 KOG2422 Uncharacterized conser 47.1 1.8E+02 0.0039 30.7 9.9 56 408-463 349-406 (665)
402 COG3947 Response regulator con 46.7 57 0.0012 31.1 5.9 56 166-221 282-340 (361)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 46.6 1.3E+02 0.0029 24.7 7.8 42 419-460 81-124 (126)
404 PF11848 DUF3368: Domain of un 46.4 82 0.0018 20.7 5.2 33 307-339 13-45 (48)
405 PF11663 Toxin_YhaV: Toxin wit 45.7 28 0.0006 28.8 3.4 32 105-138 107-138 (140)
406 PF09477 Type_III_YscG: Bacter 44.3 1.6E+02 0.0035 23.4 8.1 78 245-325 21-98 (116)
407 KOG2300 Uncharacterized conser 44.2 3.9E+02 0.0084 27.8 19.6 124 201-324 330-473 (629)
408 PF13929 mRNA_stabil: mRNA sta 44.1 3E+02 0.0065 26.4 16.4 113 106-218 141-262 (292)
409 KOG1550 Extracellular protein 43.7 4.4E+02 0.0096 28.3 17.8 109 78-190 228-355 (552)
410 KOG0376 Serine-threonine phosp 43.3 20 0.00044 36.4 2.8 95 338-436 11-107 (476)
411 PF11846 DUF3366: Domain of un 42.9 99 0.0021 27.7 7.1 51 343-393 120-170 (193)
412 PF11848 DUF3368: Domain of un 42.2 83 0.0018 20.7 4.7 31 105-135 14-44 (48)
413 TIGR01503 MthylAspMut_E methyl 41.8 1.9E+02 0.0041 29.7 9.1 99 453-569 152-257 (480)
414 PRK13800 putative oxidoreducta 41.5 6.1E+02 0.013 29.3 28.6 248 126-398 633-883 (897)
415 KOG2908 26S proteasome regulat 41.5 3.6E+02 0.0077 26.6 10.6 50 343-392 87-140 (380)
416 PF10255 Paf67: RNA polymerase 41.4 83 0.0018 31.9 6.7 26 436-461 165-190 (404)
417 KOG4507 Uncharacterized conser 41.3 1.2E+02 0.0027 31.9 7.9 137 327-466 567-707 (886)
418 PRK10941 hypothetical protein; 40.8 2E+02 0.0044 27.4 9.0 67 371-438 185-252 (269)
419 COG4976 Predicted methyltransf 40.8 53 0.0011 30.1 4.6 60 376-436 4-64 (287)
420 PF14689 SPOB_a: Sensor_kinase 39.6 46 0.00099 23.4 3.4 26 299-324 26-51 (62)
421 KOG0403 Neoplastic transformat 39.1 4.5E+02 0.0097 27.0 17.9 58 371-430 513-572 (645)
422 PRK10564 maltose regulon perip 39.0 49 0.0011 31.7 4.4 36 96-131 260-295 (303)
423 PF07064 RIC1: RIC1; InterPro 38.9 3.5E+02 0.0075 25.7 14.5 85 169-258 159-248 (258)
424 PRK10564 maltose regulon perip 38.8 61 0.0013 31.1 5.0 41 298-338 259-299 (303)
425 PF12968 DUF3856: Domain of Un 38.8 2.2E+02 0.0047 23.3 7.4 61 401-461 55-126 (144)
426 PF14863 Alkyl_sulf_dimr: Alky 38.7 1.4E+02 0.0031 25.2 6.7 63 384-451 58-120 (141)
427 KOG1498 26S proteasome regulat 38.4 4.3E+02 0.0093 26.6 18.9 187 261-478 48-255 (439)
428 cd08819 CARD_MDA5_2 Caspase ac 38.4 1.8E+02 0.0039 22.2 7.1 38 175-213 48-85 (88)
429 KOG0292 Vesicle coat complex C 38.3 36 0.00079 37.4 3.8 76 337-430 626-701 (1202)
430 COG4976 Predicted methyltransf 38.3 51 0.0011 30.2 4.2 55 341-398 5-61 (287)
431 cd08326 CARD_CASP9 Caspase act 37.4 1.2E+02 0.0026 22.9 5.5 62 47-112 19-80 (84)
432 cd00280 TRFH Telomeric Repeat 37.4 1.8E+02 0.0039 25.7 7.2 26 408-434 118-143 (200)
433 PHA03100 ankyrin repeat protei 37.2 5E+02 0.011 27.0 14.6 14 48-61 49-62 (480)
434 COG2976 Uncharacterized protei 37.2 3.1E+02 0.0068 24.6 13.8 89 136-224 97-189 (207)
435 COG4941 Predicted RNA polymera 37.1 4.2E+02 0.0091 26.1 10.9 120 312-435 272-399 (415)
436 COG4785 NlpI Lipoprotein NlpI, 36.5 3.4E+02 0.0074 24.9 15.6 62 163-224 99-163 (297)
437 cd08819 CARD_MDA5_2 Caspase ac 36.5 1.9E+02 0.0042 22.0 7.0 38 277-315 48-85 (88)
438 PF04090 RNA_pol_I_TF: RNA pol 35.9 2.7E+02 0.0059 25.1 8.4 62 402-463 42-104 (199)
439 PHA03100 ankyrin repeat protei 35.6 5.3E+02 0.012 26.9 13.9 42 47-88 86-131 (480)
440 KOG3824 Huntingtin interacting 35.2 71 0.0015 30.6 4.8 60 377-437 126-186 (472)
441 KOG4077 Cytochrome c oxidase, 35.0 2.3E+02 0.0051 23.3 6.9 46 112-157 68-113 (149)
442 PF11768 DUF3312: Protein of u 35.0 3.2E+02 0.007 28.8 9.8 21 169-189 414-434 (545)
443 cd00280 TRFH Telomeric Repeat 34.8 2.3E+02 0.005 25.1 7.4 26 373-398 117-142 (200)
444 PF12069 DUF3549: Protein of u 33.9 4.8E+02 0.01 25.8 12.5 85 271-358 172-257 (340)
445 PF14689 SPOB_a: Sensor_kinase 33.8 58 0.0012 22.9 3.2 30 92-121 22-51 (62)
446 PF13934 ELYS: Nuclear pore co 33.6 3.9E+02 0.0084 24.7 10.3 70 337-412 114-183 (226)
447 KOG4334 Uncharacterized conser 33.0 28 0.00062 35.1 2.0 174 91-278 372-573 (650)
448 KOG3824 Huntingtin interacting 32.3 71 0.0015 30.6 4.3 54 342-398 127-182 (472)
449 COG5108 RPO41 Mitochondrial DN 32.2 2.2E+02 0.0047 30.7 8.1 72 301-376 33-112 (1117)
450 cd08326 CARD_CASP9 Caspase act 32.1 2.2E+02 0.0047 21.5 6.2 41 173-213 40-80 (84)
451 COG5159 RPN6 26S proteasome re 31.2 4.8E+02 0.01 25.0 13.0 130 2-131 10-167 (421)
452 PF08967 DUF1884: Domain of un 31.2 55 0.0012 24.2 2.7 24 493-516 6-29 (85)
453 smart00804 TAP_C C-terminal do 30.7 45 0.00098 23.5 2.2 24 208-231 39-62 (63)
454 PRK14700 recombination factor 29.9 5.2E+02 0.011 25.1 9.7 44 96-139 126-172 (300)
455 KOG1524 WD40 repeat-containing 29.9 2.6E+02 0.0056 29.2 7.9 89 366-459 572-668 (737)
456 COG2912 Uncharacterized conser 29.7 1.5E+02 0.0032 28.1 5.9 60 405-464 185-244 (269)
457 COG2909 MalT ATP-dependent tra 29.2 8.8E+02 0.019 27.4 23.5 218 174-392 426-684 (894)
458 PF11838 ERAP1_C: ERAP1-like C 28.7 5.5E+02 0.012 24.9 17.6 79 144-222 146-229 (324)
459 PF13934 ELYS: Nuclear pore co 28.1 4.8E+02 0.011 24.1 12.8 20 302-321 114-133 (226)
460 PF12796 Ank_2: Ankyrin repeat 28.0 1.8E+02 0.004 21.6 5.5 13 74-86 6-18 (89)
461 COG5108 RPO41 Mitochondrial DN 27.9 3E+02 0.0066 29.7 8.2 74 133-206 33-115 (1117)
462 KOG4642 Chaperone-dependent E3 27.8 5.1E+02 0.011 24.2 9.2 15 303-317 51-65 (284)
463 PRK11639 zinc uptake transcrip 27.6 2.5E+02 0.0055 24.5 6.9 20 111-130 43-62 (169)
464 PF11817 Foie-gras_1: Foie gra 27.5 2.8E+02 0.006 26.1 7.6 21 200-220 184-204 (247)
465 PF11525 CopK: Copper resistan 27.4 21 0.00046 25.3 0.1 21 581-601 8-28 (73)
466 COG0735 Fur Fe2+/Zn2+ uptake r 27.2 2.9E+02 0.0063 23.4 7.0 42 136-177 28-69 (145)
467 PF06957 COPI_C: Coatomer (COP 27.1 1.5E+02 0.0033 30.3 5.9 45 390-434 289-333 (422)
468 TIGR02270 conserved hypothetic 26.8 7.1E+02 0.015 25.6 25.7 45 161-205 98-142 (410)
469 KOG4521 Nuclear pore complex, 26.7 1.1E+03 0.024 27.8 15.5 20 273-292 928-947 (1480)
470 COG5191 Uncharacterized conser 26.5 1.3E+02 0.0027 29.1 4.9 75 366-441 106-182 (435)
471 COG5159 RPN6 26S proteasome re 26.4 5.9E+02 0.013 24.5 12.1 45 305-349 12-63 (421)
472 PF07575 Nucleopor_Nup85: Nup8 26.4 6E+02 0.013 27.4 10.9 75 214-291 390-464 (566)
473 PRK11639 zinc uptake transcrip 26.4 2.5E+02 0.0055 24.5 6.7 61 322-384 17-77 (169)
474 PF12862 Apc5: Anaphase-promot 26.3 3E+02 0.0065 21.1 7.7 19 340-358 50-68 (94)
475 COG0735 Fur Fe2+/Zn2+ uptake r 26.0 3.4E+02 0.0074 23.0 7.2 64 319-384 9-72 (145)
476 KOG0686 COP9 signalosome, subu 26.0 7.1E+02 0.015 25.3 13.9 59 266-324 151-215 (466)
477 PF10345 Cohesin_load: Cohesin 25.7 9E+02 0.019 26.4 32.5 157 64-221 61-252 (608)
478 KOG2471 TPR repeat-containing 25.5 7.9E+02 0.017 25.7 13.5 290 120-413 9-381 (696)
479 PF10475 DUF2450: Protein of u 25.4 3.2E+02 0.0069 26.4 7.8 54 167-222 102-155 (291)
480 cd07153 Fur_like Ferric uptake 25.0 1.7E+02 0.0037 23.4 5.1 45 99-143 6-50 (116)
481 cd08332 CARD_CASP2 Caspase act 25.0 2.3E+02 0.0049 21.7 5.3 59 47-109 23-81 (90)
482 PF09454 Vps23_core: Vps23 cor 24.9 1.5E+02 0.0033 21.1 4.0 50 293-343 5-54 (65)
483 PF10255 Paf67: RNA polymerase 24.6 3.3E+02 0.0072 27.7 7.8 57 267-323 124-191 (404)
484 cd07153 Fur_like Ferric uptake 24.6 1.8E+02 0.0039 23.3 5.1 44 303-346 7-50 (116)
485 PF15015 NYD-SP12_N: Spermatog 24.2 6.4E+02 0.014 25.7 9.3 19 372-390 233-251 (569)
486 PLN03192 Voltage-dependent pot 24.1 7.1E+02 0.015 28.4 11.4 59 269-332 623-684 (823)
487 PF04190 DUF410: Protein of un 24.1 6.2E+02 0.013 24.0 17.5 112 75-197 3-124 (260)
488 KOG2223 Uncharacterized conser 23.8 5.8E+02 0.012 26.0 8.9 104 353-459 461-571 (586)
489 PF09670 Cas_Cas02710: CRISPR- 23.6 7.8E+02 0.017 24.9 12.4 60 96-157 135-198 (379)
490 COG2178 Predicted RNA-binding 23.4 4.6E+02 0.0099 23.6 7.4 52 273-324 37-97 (204)
491 PF12926 MOZART2: Mitotic-spin 23.4 3.4E+02 0.0073 20.7 7.3 62 126-189 8-69 (88)
492 PF09454 Vps23_core: Vps23 cor 23.3 1.7E+02 0.0036 20.9 4.0 34 91-124 6-39 (65)
493 PF02607 B12-binding_2: B12 bi 23.1 1.5E+02 0.0032 21.7 4.0 37 307-343 12-48 (79)
494 PF08311 Mad3_BUB1_I: Mad3/BUB 23.0 4.3E+02 0.0093 21.7 8.1 42 349-391 81-123 (126)
495 PF08424 NRDE-2: NRDE-2, neces 22.8 7.3E+02 0.016 24.3 13.3 116 312-431 47-184 (321)
496 PHA02791 ankyrin-like protein; 22.6 7E+02 0.015 24.0 10.6 17 172-188 134-150 (284)
497 PRK14015 pepN aminopeptidase N 22.4 1.2E+03 0.027 26.8 15.3 153 300-457 686-846 (875)
498 PF00244 14-3-3: 14-3-3 protei 22.4 6.4E+02 0.014 23.5 11.8 164 302-466 7-200 (236)
499 TIGR02270 conserved hypothetic 22.1 8.7E+02 0.019 24.9 25.0 25 228-252 98-122 (410)
500 PF01475 FUR: Ferric uptake re 21.8 1.6E+02 0.0036 23.7 4.4 46 301-346 12-57 (120)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-123 Score=1009.92 Aligned_cols=600 Identities=31% Similarity=0.576 Sum_probs=590.2
Q ss_pred chhhhhccchHHHHHHHHHhhhCC-CCCChhhHHHHHHHhhChhHH---HHHHHHHHHhCCCCchHHHHHHHHHHHcCCC
Q 039695 2 KKSLTRNLIFTLAASSLTRQNKRS-SCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77 (605)
Q Consensus 2 ~~~l~~~~~~~~a~~~l~~m~~~g-~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 77 (605)
++.+.+.|++++|+++|.+|...+ ..|+..||..++.+|.+.+.. .++|..|.+.|+.||+.+||.|+++|+++|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 456788999999999999998764 789999999999999988766 8999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039695 78 TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157 (605)
Q Consensus 78 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 157 (605)
+++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.++|..+.+.
T Consensus 174 ~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH
Q 039695 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237 (605)
Q Consensus 158 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 237 (605)
|+.||..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...| +.||..||++++
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll 332 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMI 332 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHH
Q 039695 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317 (605)
Q Consensus 238 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (605)
.+|++.|.+++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++|++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 039695 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397 (605)
Q Consensus 318 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 397 (605)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++|+..|
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p 492 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEe
Q 039695 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477 (605)
Q Consensus 398 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 477 (605)
+ ..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++
T Consensus 493 ~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 493 T--VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred C--HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeeeccccCccchHHHHHHHHHHHHHHHHCCccCCCccccccccchhhhhhhhhhhhHHHHHHHcccCCCCCCcEE
Q 039695 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557 (605)
Q Consensus 478 ~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~ 557 (605)
++.+|.|++||..||+.+++++.++++..+|++.||.|| +++++|++++++|+..+.+||||||++|||+++|+|.|||
T Consensus 571 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~-~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~ 649 (697)
T PLN03081 571 KKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE-ENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQ 649 (697)
T ss_pred CCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC-cchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEE
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred EEecccccCCchhhhHhhhhhccceEEEecCCcccccccccccCCCCC
Q 039695 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGDFW 605 (605)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~w 605 (605)
|+||||+|+|||+|+|+||++.+|+|||||++|||||+||+|||+|||
T Consensus 650 i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 650 ITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-119 Score=999.20 Aligned_cols=596 Identities=36% Similarity=0.666 Sum_probs=584.7
Q ss_pred CchhhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHH---HHHHHHHHHhCCCCchHHHHHHHHHHHcCCC
Q 039695 1 MKKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77 (605)
Q Consensus 1 l~~~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 77 (605)
|+..+.+.|++++|+++|.+|.+.|+.||..||..++.+|.+.++. +++|..+.+.|+.||..+||+||.+|+++|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999999988877 8999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039695 78 TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157 (605)
Q Consensus 78 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 157 (605)
+++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH
Q 039695 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237 (605)
Q Consensus 158 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 237 (605)
|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. + ++||..||+.++
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL 496 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAAL 496 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 5 899999999999
Q ss_pred HhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHH
Q 039695 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLD 317 (605)
Q Consensus 238 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (605)
.+|++.|.++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 039695 318 LFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397 (605)
Q Consensus 318 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 397 (605)
+|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+++|+.|+..+|++++++|+++|++++|.+++++|+.+|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEe
Q 039695 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEI 477 (605)
Q Consensus 398 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 477 (605)
+ ..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|+||+|||++
T Consensus 656 d--~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 656 D--PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeeeccccCccchHHHHHHHHHHHHHHHHCCccCCCccccccccchhhhhhhhhhhhHHHHHHHcccCCCCCCcEE
Q 039695 478 RDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIR 557 (605)
Q Consensus 478 ~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~ 557 (605)
++.+|.|++||.+||+.++|+..|+++..+|++.||.|| +++++ ++++++|+..+++||||||++|||+++|++.|||
T Consensus 734 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~-~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~ 811 (857)
T PLN03077 734 KGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS-ESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIW 811 (857)
T ss_pred CCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC-cchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEE
Confidence 999999999999999999999999999999999999999 77777 4578899999999999999999999999999999
Q ss_pred EEecccccCCchhhhHhhhhhccceEEEecCCcccccccccccCCC
Q 039695 558 IMKNLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSCGD 603 (605)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~ 603 (605)
|+||||+|+|||+++|+||++.+|+|||||++|||||+||+|||+|
T Consensus 812 i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 812 VTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-76 Score=659.36 Aligned_cols=579 Identities=24% Similarity=0.386 Sum_probs=514.1
Q ss_pred chhhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHH---HHHHHHHHHhCCCCchHHHHHHHHHHHcCCCh
Q 039695 2 KKSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78 (605)
Q Consensus 2 ~~~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 78 (605)
++.+.+.|++++|+.+|..|.+.|+.|+..++..++++|.+.+.. .++|..+.+.|..++..++|+||.+|+++|++
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~ 137 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL 137 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh
Confidence 467889999999999999999999999999999999999877655 89999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 039695 79 QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG 158 (605)
Q Consensus 79 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 158 (605)
+.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.++|..+.+.|
T Consensus 138 ~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g 217 (857)
T PLN03077 138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217 (857)
T ss_pred HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHH
Q 039695 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238 (605)
Q Consensus 159 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 238 (605)
+.||..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|...| +.||..||+.++.
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~ 296 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVIS 296 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHH
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 039695 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398 (605)
Q Consensus 319 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 398 (605)
|++|.+.|+.||..||+.++.+|++.|++++|.++++.| .+.|+.|+..+|++|+++|+++|++++|.++|++|+ +++
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999 566999999999999999999999999999999998 567
Q ss_pred chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc-------
Q 039695 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPG------- 471 (605)
Q Consensus 399 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~------- 471 (605)
..+|++++.+|.++|+.++|..+|++|.+..++|..+|..++.+|++.|..+.+.+++..|.+.|+.++..
T Consensus 455 --~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 --VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred --eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 89999999999999999999999999987555566677777766666666666666666666655544332
Q ss_pred ----------------------eeEEEeCCEEeeeeccccCccchHHHHHHHHHHHHHHHHCCccCCCccc--cccccch
Q 039695 472 ----------------------CSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL--VFVDVED 527 (605)
Q Consensus 472 ----------------------~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~--~~~~~~~ 527 (605)
.+|. ..+.++..|++.+++. +++++|.+.|+.||..++ ++..+..
T Consensus 533 ~y~k~G~~~~A~~~f~~~~~d~~s~n-------~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSHEKDVVSWN-------ILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred HHHHcCCHHHHHHHHHhcCCChhhHH-------HHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 2332 2366777888888776 789999999999997776 3333332
Q ss_pred hh-hhhhhhhhhHHHHHHHcccCCCCCCcEEEEecccccCCchhhhHhhhhhccc------eEEEecCCccccccccc
Q 039695 528 EA-REEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCHDVFKLISDIVER------DFVVRDVNRFHHFRNGS 598 (605)
Q Consensus 528 ~~-~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~g~ 598 (605)
.+ .++.. ...+.+.-.+|+.+...+.. ++++.+.++|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+
T Consensus 602 ~g~v~ea~-~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 602 SGMVTQGL-EYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred cChHHHHH-HHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 11 12222 23344555688877766665 6999999999999999999999743 22344555555555443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-64 Score=547.44 Aligned_cols=462 Identities=17% Similarity=0.237 Sum_probs=423.3
Q ss_pred hhhhccchHHHHHHHHHhhhCCCC--------------------------------CChhhHHHHHHHhhChhHH---HH
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSC--------------------------------HTKAHFIQQLQECKHLISL---AS 48 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~--------------------------------~~~~~~~~~l~~~~~~~~~---~~ 48 (605)
.+.+.|+.++|+++|++|.+.|+. |+..||..++.+|++.++. .+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 455667777777777777766642 6788899999999888876 89
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 49 VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML----EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124 (605)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 124 (605)
++..|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999995 59999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CChhhHH
Q 039695 125 WPNEFTFATVIKACSMLADLITGKQIHTHIET--FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC----RNVVSWT 198 (605)
Q Consensus 125 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~ 198 (605)
.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|+.|.+ |+..+||
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999987 67899999999999999999999999999999975 6779999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 039695 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278 (605)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 278 (605)
++|.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|++||++|+++
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccC----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 039695 279 GSVNYSDKVFNRIS----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354 (605)
Q Consensus 279 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 354 (605)
|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999995 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHh----hcC-------------------CHHHHHHHHHhCC---CCCCchhhHHHHHH
Q 039695 355 DSMYRKYGIIPDAKHYTCVVDMLG----RTG-------------------RLDEAYKLAKSIQ---VDPDGGPLLWGTLL 408 (605)
Q Consensus 355 ~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m~---~~p~~~~~~~~~ll 408 (605)
++| .+.|+.||..+|++++.++. +++ ..++|..+|++|. ..|+ ..+|+.++
T Consensus 778 ~~M-~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd--~~T~~~vL 854 (1060)
T PLN03218 778 SQA-KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT--MEVLSQVL 854 (1060)
T ss_pred HHH-HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Confidence 999 56699999999999997743 222 2467999999986 6788 99999999
Q ss_pred HHHHHcCChHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 039695 409 SASRLHGRVDIAVEASNQLIE-SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPG 471 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 471 (605)
.++...+..+.+..+++.+.. -.+++..+|..|++++.+. .++|..++++|.+.|+.|+..
T Consensus 855 ~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 855 GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888888888888888877654 3466678999999988432 368999999999999988764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-61 Score=525.59 Aligned_cols=521 Identities=13% Similarity=0.216 Sum_probs=413.5
Q ss_pred CCChhhHHHHHHHhh---ChhHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHH
Q 039695 27 CHTKAHFIQQLQECK---HLISLASVHSEILKSGF-LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAG 102 (605)
Q Consensus 27 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 102 (605)
.++...+..++..+. +..++.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 445556666666664 44445888888988885 56777888888999999999999999999988999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 039695 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182 (605)
Q Consensus 103 ~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 182 (605)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC----CChhhHHHHHHHHHHcCChhHHHHHHHHHHH--cCCCCCChhHHHhHHHhhcccCchhhHHHHHHHH
Q 039695 183 RRVFDLMGC----RNVVSWTSIIVAHAQNAQGHEALEMFREFNY--QSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256 (605)
Q Consensus 183 ~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 256 (605)
.++|++|.. ||.++||.||.+|++.|++++|.++|.+|.. .| +.||..||++++.+|++.|++++|.++|+.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998853 8889999999999999999999999999976 45 8899999999999999999999999999999
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 257 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
.+.|++|+..+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999887 4788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCchhhHHHHHHH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ---VDPDGGPLLWGTLLS 409 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~~~ll~ 409 (605)
+|+.++.+|++.|++++|.++|++| .+.|+.||..+|++||.+|++.|++++|.++|++|. ..|| ..+|++++.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM-~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd--~~Ty~sLL~ 762 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN--TITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 9999999999999999999999998 556889999999999999999999999999998875 5678 889999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCCceeEEEeCCEEeeeecc
Q 039695 410 ASRLHGRVDIAVEASNQLIESN-QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI-HKEPGCSWVEIRDQTYAFYAG 487 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~-~~~~~~s~~~~~~~~~~f~~~ 487 (605)
+|.+.|+++.|.++++++.+.+ .++..+|..|+.+|.+ +++++.++.+.+..-+. .......|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w------------- 827 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW------------- 827 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch-------------
Confidence 9999999999999999998865 3455678888766542 45555554433332110 00000111
Q ss_pred ccCccchHHHHHHHHHHHHHHHHCCccCCCccc--cccccchhhhhhhhhhhhHHHHHHHcccCCCCCCcE--EEEeccc
Q 039695 488 NALFERGSEVLSLLRELERKMKERGYVGGKTGL--VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITI--RIMKNLR 563 (605)
Q Consensus 488 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~--~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~--~~~~~~~ 563 (605)
..+ ...++++|.+.|+.||..++ ++ .+. .+.... ...+.+--.+++.+.+++... .+++.+
T Consensus 828 ------~~~----Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl--~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~- 892 (1060)
T PLN03218 828 ------TSW----ALMVYRETISAGTLPTMEVLSQVL-GCL--QLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF- 892 (1060)
T ss_pred ------HHH----HHHHHHHHHHCCCCCCHHHHHHHH-HHh--cccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh-
Confidence 122 33789999999999996555 22 111 121111 122334445666666554332 244443
Q ss_pred ccCC-chhhhHhhhhhccceE
Q 039695 564 MCRD-CHDVFKLISDIVERDF 583 (605)
Q Consensus 564 ~~~~-~~~~~~~~~~~~~~~~ 583 (605)
+. -++|..++..|..+.|
T Consensus 893 --~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 893 --GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred --ccChHHHHHHHHHHHHcCC
Confidence 32 2578888888886644
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-60 Score=520.34 Aligned_cols=486 Identities=21% Similarity=0.299 Sum_probs=421.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 039695 90 EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168 (605)
Q Consensus 90 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 168 (605)
.++..+|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..+.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhh
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 248 (605)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 039695 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328 (605)
Q Consensus 249 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 328 (605)
+.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 039695 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408 (605)
Q Consensus 329 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll 408 (605)
||..||+.++.+|++.|.+++|.+++..| .+.|+.||..+|++|+++|+++|++++|.++|++|. +|| ..+|++|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d--~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKN--LISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCC--eeeHHHHH
Confidence 99999999999999999999999999999 456999999999999999999999999999999997 577 99999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCCceeEEEeCCEEeeeec
Q 039695 409 SASRLHGRVDIAVEASNQLIESN-QQVANAYVTLSNTYALAGEWENVHSLRSEMKR-TGIHKEPGCSWVEIRDQTYAFYA 486 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~f~~ 486 (605)
.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|+.++|.++|+.|.+ .|+.|+...... .+.
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~ 470 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIE 470 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHH
Confidence 99999999999999999999865 44578999999999999999999999999986 588765432221 233
Q ss_pred cccCccchHHHHHHHHHHHHHHHHCCccCCCccc--cccccchhhhhhhhhhhhHHHHHHHcccCCCCCCcEEEEecccc
Q 039695 487 GNALFERGSEVLSLLRELERKMKERGYVGGKTGL--VFVDVEDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRM 564 (605)
Q Consensus 487 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~--~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~ 564 (605)
+....++.+++++ ++ .+.++.||..+| ++..+...+.-+......++ .+++.+...+..+.+++.+..
T Consensus 471 ~l~r~G~~~eA~~----~~---~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 471 LLGREGLLDEAYA----MI---RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred HHHhcCCHHHHHH----HH---HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHh
Confidence 4456677776653 33 345788995554 22222211111111112222 245544434444567788999
Q ss_pred cCCchhhhHhhhhhccceEEE-------ecCCccccccccc
Q 039695 565 CRDCHDVFKLISDIVERDFVV-------RDVNRFHHFRNGS 598 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~~~~~~~g~ 598 (605)
+|+..+|.+++..|..+.+-. --.+..|.|..|-
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999876521 1234556675553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.4e-26 Score=263.58 Aligned_cols=450 Identities=13% Similarity=0.062 Sum_probs=309.1
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChh---HHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhH
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLI---SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 80 (605)
.+...|++++|++.+..+......+... ...+...+.+.+ ....++..+.+. .+.++.+++.+...|...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRA-DLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhh-HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH
Confidence 3456788888888888876654222211 122222233333 335555555443 35566777778888888888888
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039695 81 ARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157 (605)
Q Consensus 81 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 157 (605)
|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+. .+..++..+...+...|+.++|...++.+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888877632 3455677777777788888888888888776542 25567777777777778888888888777766
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHH
Q 039695 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA 234 (605)
Q Consensus 158 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~ 234 (605)
+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.... +.+...+.
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 639 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALL 639 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 4 45566677777778888888888888777653 456677777778888888888888887776643 33555666
Q ss_pred hHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCC
Q 039695 235 SVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGL 311 (605)
Q Consensus 235 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 311 (605)
.+..++...|++++|...+..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...+...|+
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 77777777788888887777777654 44566777777777777777777777777753 344566667777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 039695 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAK 391 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (605)
+++|...|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+
T Consensus 719 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 719 YPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred HHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 77777777777764 344456666777777777777777777777543 23346677777777777777777777777
Q ss_pred hCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 392 SIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 392 ~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
++. ..|+ ++.+++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 795 ~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 795 TVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 653 2232 26677777777777777 6677777777777777777777777777777777777777777776654
No 8
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=3.8e-31 Score=212.99 Aligned_cols=106 Identities=53% Similarity=0.937 Sum_probs=96.5
Q ss_pred ceeEEEeCCEEeeeeccccCccchHHHHHHHHHHHHHHHHCCccCCCccccccccchhhh--------hhhhhhhhHHHH
Q 039695 471 GCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAR--------EEIVGLHSERLA 542 (605)
Q Consensus 471 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~~~~h~e~~a 542 (605)
|+||+++ |.|++||.+||+. ++..++...||.|+ +..+.|++.++++ +..+.+||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPD-TKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcch-hhhhCCCchhhhhhhcccccchhhhhccHHHHH
Confidence 6899875 9999999999988 45677788999999 7888888887665 568899999999
Q ss_pred HHHcccCCCCCCcEEEEecc-cccCCchhhhHhhhhhccceEEEecCCcccccc
Q 039695 543 LAFGLISIPKGITIRIMKNL-RMCRDCHDVFKLISDIVERDFVVRDVNRFHHFR 595 (605)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 595 (605)
++|||+++ ||+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999988 899999 999999999999999999999999999999996
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.9e-26 Score=258.53 Aligned_cols=450 Identities=13% Similarity=0.002 Sum_probs=370.0
Q ss_pred hhhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhCh---hHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChh
Q 039695 3 KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHL---ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ 79 (605)
Q Consensus 3 ~~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 79 (605)
..+.+.|++++|.+.|+++.+.... +...+..+...+... ......+..+.+... .+......++..|.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHH
Confidence 3467789999999999998765321 223333333333333 333555555555442 23455667788899999999
Q ss_pred HHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 039695 80 VARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156 (605)
Q Consensus 80 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 156 (605)
+|.++++.+.. +++.+|+.+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++.+.+
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998843 4677899999999999999999999999987532 2455677788888999999999999999988
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHH
Q 039695 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233 (605)
Q Consensus 157 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 233 (605)
.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++.... +.+..++
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 604 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAW 604 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHH
Confidence 75 56788899999999999999999999998854 456678889999999999999999999998653 5677889
Q ss_pred HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcC
Q 039695 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYG 310 (605)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 310 (605)
..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998865 55677888999999999999999999998764 45678999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 039695 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390 (605)
Q Consensus 311 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 390 (605)
++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+..++..+..++.+.|++++|.+.+
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998874 44677788888899999999999999998863 4576678888999999999999999998
Q ss_pred HhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 391 KSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 391 ~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+++. ..|+ +..++..+...+...|+.++|...|+++++..|+++.++..++.+|.+.|+ ++|...+++..+..
T Consensus 760 ~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 760 EAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 8854 2333 377889999999999999999999999999999999999999999999999 88999999987754
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-20 Score=184.08 Aligned_cols=444 Identities=12% Similarity=0.082 Sum_probs=352.2
Q ss_pred hhhhhccchHHHHHHHHHhhhCCC--CCChhhHHHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhH
Q 039695 3 KSLTRNLIFTLAASSLTRQNKRSS--CHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80 (605)
Q Consensus 3 ~~l~~~~~~~~a~~~l~~m~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 80 (605)
.++.+.|++++|.+--...-++.. .++...+..+...+.+.....+--...++. .+--..+|+.+.+.+-..|++++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHH
Confidence 456778899999888776544422 122222333333333332221111111111 12345688889999999999999
Q ss_pred HHHHHhcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHH
Q 039695 81 ARQLFDEMLE--P-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT-VIKACSMLADLITGKQIHTHIET 156 (605)
Q Consensus 81 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~ 156 (605)
|+.+++.+.+ | .+..|..+..++...|+.+.|...|.+.++ +.|+.+...+ +-...-..|++++|...+.++++
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999998844 3 568899999999999999999999999888 4566554333 33333457899999999998887
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHH
Q 039695 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN---VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233 (605)
Q Consensus 157 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 233 (605)
.. +.-...|+.|...+-..|++..|+.-|++...-| ...|-.|...|-..+.+++|+..|.+..... +-....+
T Consensus 213 ~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~ 289 (966)
T KOG4626|consen 213 TQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAH 289 (966)
T ss_pred hC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--Ccchhhc
Confidence 64 3345678999999999999999999999987644 3578888999999999999999999887643 3356778
Q ss_pred HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcC
Q 039695 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYG 310 (605)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 310 (605)
..+...|-..|.++.|...++..++.. +.-+..|+.|.+++-..|++.+|.+.+++... ....+.+.|...|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 888888999999999999999998865 44477899999999999999999999998874 34568889999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHH
Q 039695 311 LGRFSLDLFNEMISRGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 311 ~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (605)
..++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.+ .+.|+ ...|+.+...|-..|+.+.|..
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999887 5665 4678899999999999999999999886 78999 8899999999999999999999
Q ss_pred HHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 039695 389 LAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 389 ~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
.+.+ +...|. -....+.|.+.+...|++.+|++.++.++++.|+-+.+|..++.+.---.+|.+=.+-++
T Consensus 444 ~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 444 CYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9987 445664 245889999999999999999999999999999999999999988877777776433333
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.3e-18 Score=199.84 Aligned_cols=448 Identities=11% Similarity=0.011 Sum_probs=272.4
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHH----hhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChh
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQE----CKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQ 79 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 79 (605)
.+.+.|++++|++.|+...... .|+...-...... -++...+...++.+.+.. +-++..+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 4678899999999999987652 2332211111121 134444566677766653 446677888889999999999
Q ss_pred HHHHHHhcCCCCC------hhh-----------------HH----------------------------------HHHHH
Q 039695 80 VARQLFDEMLEPN------VVS-----------------YT----------------------------------SLMAG 102 (605)
Q Consensus 80 ~A~~~f~~m~~~~------~~~-----------------~~----------------------------------~li~~ 102 (605)
+|+..|+++.... ... +. ..-..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9999998863210 000 10 11223
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHH------------HHH
Q 039695 103 YINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-NLVVC------------SSL 169 (605)
Q Consensus 103 ~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------~~L 169 (605)
+...|++++|+..|++.++... -|...+..+..++...|++++|...++++++..... +...+ ..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 4556788888888888777432 156677777777888888888888888877654221 11111 122
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch
Q 039695 170 VDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246 (605)
Q Consensus 170 i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 246 (605)
...+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCH
Confidence 4456677888888888877754 345566677778888888888888888877643 222333333333221 1223
Q ss_pred hhHHHHHHHHHHhCC--------CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CcchHHHHHHHHHHcCChhHH
Q 039695 247 VSGKVAHGVVVRSGC--------EFNDVVASALVDMYAKCGSVNYSDKVFNRISN--P-SVVTYTSMIVGAAKYGLGRFS 315 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~--------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 315 (605)
++|..++..+..... ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333333322111000 00011122233444445555555555554432 2 223344444455555555555
Q ss_pred HHHHHHHHHcCCCC-CHHHH--------------------------------------------HHHHHHHhccCcHHHH
Q 039695 316 LDLFNEMISRGIKP-NDVTF--------------------------------------------VGVLHACSHSGLVDEG 350 (605)
Q Consensus 316 ~~l~~~m~~~g~~p-d~~t~--------------------------------------------~~ll~a~~~~g~~~~a 350 (605)
...|++..+. .| +...+ ..+...+...|+.++|
T Consensus 515 ~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 5555554432 11 11111 2233445555666666
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 351 IQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 351 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
.++++. .+++...+..+.+.+.+.|++++|++.|++.. ..|+ ++..+..+...+...|+.++|++.++++.+
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 665541 13345666778888888899999998888754 3454 367888888888899999999999998888
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 430 SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 430 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..|+++..+..++.++...|++++|.++++++.....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 8888888888888889899999999999988876543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=2.7e-18 Score=197.13 Aligned_cols=404 Identities=10% Similarity=0.018 Sum_probs=299.9
Q ss_pred hHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCC--CC---hhhHHHH------------HHHHHhc
Q 039695 44 ISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE--PN---VVSYTSL------------MAGYINM 106 (605)
Q Consensus 44 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~---~~~~~~l------------i~~~~~~ 106 (605)
..+...+...++.. +.+..++..|...|.+.|++++|+..|++..+ |+ ...|..+ ...+.+.
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 33355555555543 33667777788888888888888888887633 22 1223222 2345677
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 039695 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF 186 (605)
Q Consensus 107 g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~ 186 (605)
|++++|+..|++..+... .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|...+
T Consensus 365 g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 888888888888877532 245566667777888888888888888888764 344556666767664 45678888888
Q ss_pred hhcCCCC------------hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHH
Q 039695 187 DLMGCRN------------VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHG 254 (605)
Q Consensus 187 ~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 254 (605)
+.++... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7765321 1234456677888999999999999988754 3345667778888999999999999999
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC----c---------chHHHHHHHHHHcCChhHHHHHHHH
Q 039695 255 VVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS----V---------VTYTSMIVGAAKYGLGRFSLDLFNE 321 (605)
Q Consensus 255 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~l~~~ 321 (605)
.+.+.. +.+......+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|..+++.
T Consensus 520 ~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 520 RLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 988754 3455555566667788999999999999886421 1 1123446678889999999999872
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCc
Q 039695 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQV-DPDG 399 (605)
Q Consensus 322 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~ 399 (605)
.+++...+..+...+...|++++|...|+...+ ..|+ ...+..++.+|...|++++|++.++.... .|+
T Consensus 599 -----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~- 669 (1157)
T PRK11447 599 -----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND- 669 (1157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-
Confidence 344566777888899999999999999999864 3565 88899999999999999999999998653 333
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN------AYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 400 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
+...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|...+++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3667888889999999999999999999988765543 556678999999999999999998853
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-18 Score=170.70 Aligned_cols=362 Identities=15% Similarity=0.149 Sum_probs=307.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH-HHHHHH
Q 039695 93 VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV-CSSLVD 171 (605)
Q Consensus 93 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~ 171 (605)
..+|..+.+.+-..|++++|+.+++.|.+...+ ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 457888999999999999999999999985322 5668999999999999999999999998875 455443 344556
Q ss_pred HHHhCCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-hhHHHhHHHhhcccCchh
Q 039695 172 MYGKCNDVDGARRVFDLMGC--RN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN-QHMLASVINACASLGRLV 247 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~ 247 (605)
..-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+.-|++.... .|+ ...|..+-..+...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcch
Confidence 66678999999998887654 33 478999999999999999999999998764 344 456777888888888889
Q ss_pred hHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PS-VVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 248 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
.|...+....... +....++..|.-.|-..|.++-|...+++..+ |+ ...|+.|..++-..|+..+|...|.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 8888887776643 44567778888889999999999999999875 44 36899999999999999999999999887
Q ss_pred cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchh
Q 039695 325 RGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGP 401 (605)
Q Consensus 325 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~ 401 (605)
..|+ ....+.|...+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|+.-+++ +.++|. -.
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fA 422 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FA 422 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HH
Confidence 4454 4678889999999999999999999775 67888 77889999999999999999999987 456776 25
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
..++.+...|...|++..|.+.+.+++..+|.-..++..|+.+|-..|+..+|..-++...+....
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 689999999999999999999999999999999999999999999999999999999988775543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.6e-17 Score=177.56 Aligned_cols=391 Identities=12% Similarity=0.028 Sum_probs=286.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcc
Q 039695 65 LNHLINCYVRLKKTQVARQLFDEM--LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSML 141 (605)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~ 141 (605)
+...-..|.+.|+++.|++.|++. ..|+...|..+..+|.+.|++++|++.+...++. .| +...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 334566778889999999999987 3477788888999999999999999999998875 34 455788888889999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----------------------------
Q 039695 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR----------------------------- 192 (605)
Q Consensus 142 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----------------------------- 192 (605)
|++++|..-+..+...+-..+.. ...++.-+.+......+...++.-+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999988776665443111111 111111111111112222222221110
Q ss_pred Ch---hhHHHHHHHH---HHcCChhHHHHHHHHHHHcCCCCCC-hhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcH
Q 039695 193 NV---VSWTSIIVAH---AQNAQGHEALEMFREFNYQSRDRPN-QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND 265 (605)
Q Consensus 193 ~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 265 (605)
+. ..+..+...+ ...+++++|++.|++....+...|+ ...+..+...+...|++++|...+...++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 00 0011111000 1236889999999998876523443 4566777777788999999999999998764 3456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHAC 341 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~ 341 (605)
..+..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+. .| +...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 6888889999999999999999998764 45678889999999999999999999999885 34 456677788889
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhh------HHHHHHHHHHH
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPL------LWGTLLSASRL 413 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~------~~~~ll~~~~~ 413 (605)
.+.|++++|...|+...+ ..|+ ...++.+..++...|++++|++.|++. ...|+.... .++..+..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 999999999999998864 3454 788999999999999999999999883 333431111 12222333445
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
.|++++|.+.++++++++|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 799999999999999999999889999999999999999999999998764
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1e-18 Score=178.87 Aligned_cols=297 Identities=10% Similarity=0.058 Sum_probs=193.1
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-CC------hhhHHHHHHHHHHcCCh
Q 039695 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RN------VVSWTSIIVAHAQNAQG 210 (605)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~------~~~~~~li~~~~~~g~~ 210 (605)
+...|++++|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+.. ++ ...|..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666777766666653 33445666666666666666666666666543 11 13455556666666666
Q ss_pred hHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039695 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR 290 (605)
Q Consensus 211 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 290 (605)
++|+.+|.++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 66666666665432 23344444444444444555555444444444321110000
Q ss_pred cCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--HH
Q 039695 291 ISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--AK 368 (605)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 368 (605)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~ 250 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSE 250 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHH
Confidence 01123455666777788888888888877642 223456666777788888888888888887532 343 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 447 (605)
.++.++.+|.+.|++++|...++++. ..|+ ...+..+...+...|++++|...++++++..|++. .+..++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~ 327 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPG--ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhh
Confidence 67788888888899999988888754 4566 55668888899999999999999999999988875 55555655553
Q ss_pred ---cCChhHHHHHHHHHHhCCCccCCc
Q 039695 448 ---AGEWENVHSLRSEMKRTGIHKEPG 471 (605)
Q Consensus 448 ---~g~~~~a~~~~~~m~~~~~~~~~~ 471 (605)
.|+.+++..++++|.++++.++|.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999999988885
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=4.2e-16 Score=171.44 Aligned_cols=446 Identities=12% Similarity=0.006 Sum_probs=286.3
Q ss_pred hhhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHH--------HHc
Q 039695 3 KSLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINC--------YVR 74 (605)
Q Consensus 3 ~~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~--------~~~ 74 (605)
+-+.+.|++++|+..+++..+. .|+...+...+....+......+++.+.+.. +-+..++..+... |.+
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q 162 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQ 162 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhh
Confidence 3455667777777777766543 3444444444444444444456666666553 3334444444444 666
Q ss_pred CCChhHHHHHHhcCCCC--ChhhHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-cCChHHHHHH
Q 039695 75 LKKTQVARQLFDEMLEP--NVVSYTS-LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM-LADLITGKQI 150 (605)
Q Consensus 75 ~g~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~ 150 (605)
.+....+++ .+...| +..+... +...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+..+
T Consensus 163 ~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al 238 (987)
T PRK09782 163 LPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLAL 238 (987)
T ss_pred HHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHH
Confidence 666666665 233223 3333333 378888888888899999888887543 33334555556665 355 666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CChhhHHH--------------------------
Q 039695 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-----RNVVSWTS-------------------------- 199 (605)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~-------------------------- 199 (605)
+.. .+..++.++..+++.|.+.|+.++|.+++++++. |+..+|--
T Consensus 239 ~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 314 (987)
T PRK09782 239 QSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQY 314 (987)
T ss_pred hch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHH
Confidence 442 3346788888999999999999999999888742 11000000
Q ss_pred ----HHH---------------------------------------------------------------HHHHcCChhH
Q 039695 200 ----IIV---------------------------------------------------------------AHAQNAQGHE 212 (605)
Q Consensus 200 ----li~---------------------------------------------------------------~~~~~g~~~~ 212 (605)
++. ..++.|+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHH
Confidence 000 0134556666
Q ss_pred HHHHHHHHHH-cCCCCCChhHHHhHHHhhccc------------------------------------------------
Q 039695 213 ALEMFREFNY-QSRDRPNQHMLASVINACASL------------------------------------------------ 243 (605)
Q Consensus 213 A~~~~~~m~~-~~~~~p~~~t~~~ll~a~~~~------------------------------------------------ 243 (605)
|.++|+.... .+...++......++..+...
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~ 474 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPS 474 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCC
Confidence 6666665543 111112222222333333222
Q ss_pred ---------------CchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHHHH
Q 039695 244 ---------------GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVTYTSMIVGA 306 (605)
Q Consensus 244 ---------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 306 (605)
++.++|...+....... |+......+...+...|++++|...|+++.. |+...+..+...+
T Consensus 475 ~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 475 YDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 23333444333333322 3332233334444577888888888876653 4445566667777
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (605)
.+.|+.++|..+|++..+.. +++...+..+.......|++++|...+++.. .+.|+...|..+..++.+.|++++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887753 2223333334445556699999999998886 4577888899999999999999999
Q ss_pred HHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 387 YKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 387 ~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+..+++.. ..|+ +...+..+..++...|+.++|+..++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 629 ~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 629 VSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99998854 4555 367888899999999999999999999999999999999999999999999999999999988755
Q ss_pred C
Q 039695 466 I 466 (605)
Q Consensus 466 ~ 466 (605)
.
T Consensus 708 P 708 (987)
T PRK09782 708 D 708 (987)
T ss_pred C
Confidence 3
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=5.9e-18 Score=173.19 Aligned_cols=293 Identities=13% Similarity=0.073 Sum_probs=227.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 039695 99 LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN---LVVCSSLVDMYGK 175 (605)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~ 175 (605)
....+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999998642 2455888899999999999999999999987542222 3568889999999
Q ss_pred CCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHH
Q 039695 176 CNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252 (605)
Q Consensus 176 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 252 (605)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+...+ ..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVE-------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHH--------------------
Confidence 9999999999999975 567789999999999999999999999998765 2221110
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 039695 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329 (605)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 329 (605)
....+..+...+.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|.++|+++...+...
T Consensus 179 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 179 -----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred -----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 011233455566677777777777776653 2 34466777788888999999999999988753333
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHH
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLL 408 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll 408 (605)
...++..+..++...|++++|...++.+.+ ..|+...+..++..+.+.|++++|.++++++ ...|+ ...++.++
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~--~~~~~~l~ 322 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS--LRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC--HHHHHHHH
Confidence 345678888899999999999999998853 3677667788999999999999999999864 45577 77888888
Q ss_pred HHHHH---cCChHHHHHHHHHHHh
Q 039695 409 SASRL---HGRVDIAVEASNQLIE 429 (605)
Q Consensus 409 ~~~~~---~g~~~~a~~~~~~~~~ 429 (605)
..+.. +|+.+++...++++++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHH
Confidence 77664 5688888888888875
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.6e-17 Score=175.07 Aligned_cols=351 Identities=10% Similarity=-0.007 Sum_probs=253.3
Q ss_pred cCCChhHHHHHHhcCCC------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 039695 74 RLKKTQVARQLFDEMLE------PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITG 147 (605)
Q Consensus 74 ~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 147 (605)
+..+++.---.|..-++ .+..-...++..+.+.|++++|+.+++..+..... +...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 44555555555554433 12233445666777888888888888888776443 233444455666678888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 039695 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224 (605)
Q Consensus 148 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 224 (605)
.+.++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888888764 44566777788888888888888888887754 345677788888888888888888888776543
Q ss_pred CCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHH
Q 039695 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTS 301 (605)
Q Consensus 225 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 301 (605)
+.+...+.. +..+...|++++|...+..+++....++......+...+.+.|+.++|...|+.... .+...+..
T Consensus 175 --P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 --PPRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred --CCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 122222222 234667788888888888877654334444555567778888999989888888764 34566777
Q ss_pred HHHHHHHcCChhH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHH
Q 039695 302 MIVGAAKYGLGRF----SLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVD 375 (605)
Q Consensus 302 li~~~~~~g~~~~----A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 375 (605)
+...|.+.|++++ |+..|++.... .| +...+..+...+...|++++|...++.... ..|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 8888888898885 78899988874 34 456788888888999999999999998863 4565 667777888
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 376 MLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
+|.+.|++++|.+.++++. ..|+ ....+..+..++...|+.++|...++++++..|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999998865 4455 123344456778899999999999999999988864
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.3e-16 Score=175.33 Aligned_cols=393 Identities=12% Similarity=0.042 Sum_probs=249.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhc
Q 039695 65 LNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSM 140 (605)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~t~~~ll~a~~~ 140 (605)
..-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++.++. .| +...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33444555566777777766666532 23334666666666677777777777766653 23 33344555556666
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHH
Q 039695 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--R-NVVSWTSIIVAHAQNAQGHEALEMF 217 (605)
Q Consensus 141 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 217 (605)
.|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.. | +...+..+...+.+.+..++|++.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 677777777777666653 33444 66666666677777777777766644 2 3344455566666666666676666
Q ss_pred HHHHHcCCCCCCh------hHHHhHHHhh-----cccCch---hhHHHHHHHHHHh-CCCCcHh--HHHH---HHHHHHh
Q 039695 218 REFNYQSRDRPNQ------HMLASVINAC-----ASLGRL---VSGKVAHGVVVRS-GCEFNDV--VASA---LVDMYAK 277 (605)
Q Consensus 218 ~~m~~~~~~~p~~------~t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-g~~~~~~--~~~~---li~~y~~ 277 (605)
+.... .|+. ......+... ...+++ +.|...++.+.+. ...|+.. ...+ .+..+..
T Consensus 174 ~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 174 DDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 54432 1221 0111111111 111223 5566666666643 1122211 1111 1223456
Q ss_pred cCCHHHHHHHHhccCCCC--cchH--HHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHH
Q 039695 278 CGSVNYSDKVFNRISNPS--VVTY--TSMIVGAAKYGLGRFSLDLFNEMISRGIKP---NDVTFVGVLHACSHSGLVDEG 350 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~--~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a 350 (605)
.|++++|+..|+.+.+.+ ...+ ..+...|...|++++|+..|+++....... .......+..++...|++++|
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 688888888888887532 1211 224667888889999999988877642111 123455666677888999999
Q ss_pred HHHHHHHHHhcC----------CCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCC
Q 039695 351 IQHLDSMYRKYG----------IIPD---AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 351 ~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
.++++.+..... -.|+ ...+..+...+...|++++|++.++++. ..|+ +...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 988888854311 1123 2355677888889999999999998854 3444 37789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+++|++.++++++.+|+++..+..++..+.+.|+|++|..+++++.+...
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999887543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-16 Score=171.58 Aligned_cols=329 Identities=12% Similarity=0.018 Sum_probs=267.9
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 039695 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAH 204 (605)
Q Consensus 128 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 204 (605)
..-...++..+...|+++.|..+++..+.... -+......++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33455677788899999999999999988753 3455556666777789999999999999865 3566788889999
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039695 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 284 (605)
.+.|++++|+..|++..... +.+...+..+..++...|+.++|...+..+......+ ...+..+. .+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHcCCHHHH
Confidence 99999999999999998753 3456677888889999999999999999887765333 33333333 47889999999
Q ss_pred HHHHhccCCC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHH
Q 039695 285 DKVFNRISNP----SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE----GIQHLDS 356 (605)
Q Consensus 285 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~ 356 (605)
...++.+.+. +...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999987653 23344555678899999999999999999853 3356677788889999999986 7899998
Q ss_pred HHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 357 MYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 357 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
.. .+.|+ ...+..+...+.+.|++++|...+++.. ..|+ +...+..+..++...|++++|...++++++.+|++
T Consensus 276 Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 276 AL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 86 45666 7889999999999999999999998854 4454 36678889999999999999999999999999998
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 435 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+..+..++.++...|++++|.+.+++..+...
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77777788899999999999999999877644
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=2.2e-15 Score=165.58 Aligned_cols=396 Identities=11% Similarity=-0.006 Sum_probs=294.4
Q ss_pred HHHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh
Q 039695 33 FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML---EPNVVSYTSLMAGYINMGQP 109 (605)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~ 109 (605)
+..+..-.++...+..++....... +.+...+..+...+.+.|++++|.++|++.. ..+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 4444444444444466666655422 4455568889999999999999999999962 34567788899999999999
Q ss_pred hHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 039695 110 QIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 110 ~~a~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 188 (605)
++|+..+++..+. .| +.. +..+..++...|+.++|...++.+.+.. +.+...+..+..++.+.|..+.|.+.++.
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 9999999999886 34 444 7778888899999999999999999975 44666777788899999999999999998
Q ss_pred cCC-CCh------hhHHHHHHHHH-----HcCCh---hHHHHHHHHHHHcCCCCCChh-HHHh----HHHhhcccCchhh
Q 039695 189 MGC-RNV------VSWTSIIVAHA-----QNAQG---HEALEMFREFNYQSRDRPNQH-MLAS----VINACASLGRLVS 248 (605)
Q Consensus 189 m~~-~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~p~~~-t~~~----ll~a~~~~~~~~~ 248 (605)
... |+. .....++..+. ..+++ ++|++.++.+...-...|+.. .+.. .+.++...++.++
T Consensus 176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 776 211 01122222222 22234 788999998886421334332 2211 1344567799999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------cchHHHHHHHHHHcCChhHHHHHHHH
Q 039695 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS-------VVTYTSMIVGAAKYGLGRFSLDLFNE 321 (605)
Q Consensus 249 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~ 321 (605)
|...++.+.+.+.+........+...|...|++++|...|+.+.+.+ ...+..+..++.+.|++++|..++++
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999987632112222335778999999999999999886422 12455667788999999999999999
Q ss_pred HHHcCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHH
Q 039695 322 MISRGI-----------KPND---VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 322 m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 386 (605)
+..... .|+. ..+..+...+...|+.++|++.++++... .|+ ...+..+..++...|++++|
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 987521 2332 24456667888899999999999998643 454 88899999999999999999
Q ss_pred HHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 387 YKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 387 ~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
++.+++.. ..|+ +...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 413 ~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 413 ENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999854 4565 35677778888999999999999999999999999754
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=9.6e-15 Score=157.60 Aligned_cols=395 Identities=11% Similarity=-0.030 Sum_probs=269.1
Q ss_pred HHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHH---HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 039695 67 HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM---AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143 (605)
Q Consensus 67 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 143 (605)
.++..+...|+.++|+..+++...|+...+..+. ..|...|++++|+++|+++.+.... |...+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCC
Confidence 6777777778888888888877666444433333 3566668888888888888775332 34555566667777778
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--R-NVVSWTSIIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 144 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 220 (605)
.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+ | +...+..+..+..+.|-...|+++..+-
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 88888777777665 34445555555555455666557777777754 3 4455666777777777777777766543
Q ss_pred HHcCCCCCChhH------HHhHHHhh-----cccCchhh---HHHHHHHHHHh-C-CCCcHhH-HHHH---HHHHHhcCC
Q 039695 221 NYQSRDRPNQHM------LASVINAC-----ASLGRLVS---GKVAHGVVVRS-G-CEFNDVV-ASAL---VDMYAKCGS 280 (605)
Q Consensus 221 ~~~~~~~p~~~t------~~~ll~a~-----~~~~~~~~---a~~~~~~~~~~-g-~~~~~~~-~~~l---i~~y~~~g~ 280 (605)
... +.|...- ....++-- ....++.. +..-++.+... + .++.... ..+. +-++.+.|+
T Consensus 230 p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 230 PNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred ccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 211 1111110 11111100 01122223 33333333331 1 1222122 2333 445678899
Q ss_pred HHHHHHHHhccCCCC--cc--hHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHH
Q 039695 281 VNYSDKVFNRISNPS--VV--TYTSMIVGAAKYGLGRFSLDLFNEMISRG-----IKPNDVTFVGVLHACSHSGLVDEGI 351 (605)
Q Consensus 281 ~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~ 351 (605)
+.++.+.|+.+..+. +. +-.++..+|...+++++|+.+|+++.... ..++......|..++..++++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999998532 23 44567899999999999999999987642 1223344578899999999999999
Q ss_pred HHHHHHHHhcC------------CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChH
Q 039695 352 QHLDSMYRKYG------------IIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 352 ~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
.+++.+.+... -.|| ...+..++..+...|++.+|++.++++...-+.+...+..+...+...|.+.
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPR 467 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999964211 1123 4556667888899999999999999975332334889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+|++.++.+..++|++..+...++..+...|+|++|.++.+.+.+...
T Consensus 468 ~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 468 KAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999988877654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=1.5e-14 Score=159.43 Aligned_cols=446 Identities=10% Similarity=0.050 Sum_probs=320.2
Q ss_pred chhhhhccchHHHHHHHHHhhhCCC-CCChhhHHHHHHHhhChhHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHcCCChh
Q 039695 2 KKSLTRNLIFTLAASSLTRQNKRSS-CHTKAHFIQQLQECKHLISLASVHSEILKSGFLSN-TFTLNHLINCYVRLKKTQ 79 (605)
Q Consensus 2 ~~~l~~~~~~~~a~~~l~~m~~~g~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 79 (605)
.+.+.+.|+.++|.+.+..+...-. .|...++.-.+.......... .....+ .+.++ ....-.++..+.+.++++
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA--LANYTV-QFADNRQYVVGATLPVLLKEGQYD 330 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh--ccchhh-hhHHHHHHHHHHHHHHHHhccHHH
Confidence 4567889999999999999875533 366666666665555443220 000111 11111 122334578899999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039695 80 VARQLFDEMLEPNVVSYTSLMAGYI--NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157 (605)
Q Consensus 80 ~A~~~f~~m~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 157 (605)
.|.++.+ ....+. . ..++... ..+...++...+..|.+... -+......+--.....|+.++|.++++.....
T Consensus 331 ~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~ 405 (987)
T PRK09782 331 AAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPF 405 (987)
T ss_pred HHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC
Confidence 8888754 222222 2 2333333 34666777777777876521 13333333333345779999999999988763
Q ss_pred -C-CCCchhHHHHHHHHHHhCCC---HHHHHHH------------Hh-------------hcCC---C--ChhhHHHHHH
Q 039695 158 -G-FQYNLVVCSSLVDMYGKCND---VDGARRV------------FD-------------LMGC---R--NVVSWTSIIV 202 (605)
Q Consensus 158 -g-~~~~~~~~~~Li~~y~~~g~---~~~A~~~------------~~-------------~m~~---~--~~~~~~~li~ 202 (605)
+ -..+....+.|++.|.+.+. ..++..+ .. .... + +...|..+..
T Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~ 485 (987)
T PRK09782 406 QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAK 485 (987)
T ss_pred CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 1 12345566688899988877 3333333 11 1111 2 5667788887
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 039695 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282 (605)
Q Consensus 203 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 282 (605)
++.. +++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.+
T Consensus 486 ~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~ 559 (987)
T PRK09782 486 CYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGA 559 (987)
T ss_pred HHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHH
Confidence 7776 8999999988887764 467655555556667899999999999987654 344445667788899999999
Q ss_pred HHHHHHhccCCCCcchHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 039695 283 YSDKVFNRISNPSVVTYTSMIV---GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359 (605)
Q Consensus 283 ~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 359 (605)
+|.+.|+...+.++..++.... ...+.|++++|+..|++..+ ..|+...+..+..++.+.|++++|...++...
T Consensus 560 eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL- 636 (987)
T PRK09782 560 ARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL- 636 (987)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 9999999887654444443333 33445999999999999987 45678889999999999999999999999886
Q ss_pred hcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 360 KYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 360 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
.+.|+ ...+..+...+...|++++|++.+++.. ..|+ ++..+..+..++...|++++|+..+++++++.|++..+
T Consensus 637 --~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 637 --ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred --HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 45676 7888899999999999999999998753 4554 37799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
....++...+..+++.|.+-+++....++.
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999988877766553
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=7.3e-15 Score=158.59 Aligned_cols=359 Identities=9% Similarity=0.014 Sum_probs=262.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039695 95 SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYG 174 (605)
Q Consensus 95 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 174 (605)
.+...-..+.+.|++++|+..|++.++ +.|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 355667788899999999999999887 56788889999999999999999999999999875 456778889999999
Q ss_pred hCCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCChhHHHhH--------------
Q 039695 175 KCNDVDGARRVFDLMGCR---NVVSWTSIIVAHAQNAQGHEALEMFREFNYQS-RDRPNQHMLASV-------------- 236 (605)
Q Consensus 175 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~t~~~l-------------- 236 (605)
..|++++|..-|...... +......++..+.. ..+........... ...|........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999887655321 11111111111111 11111111111110 000100000000
Q ss_pred -------------HHh------hcccCchhhHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 039695 237 -------------INA------CASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-- 293 (605)
Q Consensus 237 -------------l~a------~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 293 (605)
+.. ....+.+++|...+...++.+ .+.....++.+...|...|++++|...|++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 000 012356888889998888765 233456788888999999999999999998874
Q ss_pred CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHH
Q 039695 294 PS-VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYT 371 (605)
Q Consensus 294 ~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 371 (605)
|+ ..+|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...|+... .+.|+ ...+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal---~l~P~~~~~~~ 437 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI---DLDPDFIFSHI 437 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCccCHHHHH
Confidence 43 4577888888999999999999999998752 2356788888889999999999999999886 45665 77788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH-------HHH
Q 039695 372 CVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT-------LSN 443 (605)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~ 443 (605)
.+..++.+.|++++|+..|++.. ..|+ ++..|+.+...+...|++++|+..|++++++.|.+...+.. ...
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999998753 3443 37789999999999999999999999999999875443322 122
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 039695 444 TYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 444 ~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.|...|++++|.+++++..+..
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC
Confidence 3444799999999999887654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.5e-14 Score=134.68 Aligned_cols=311 Identities=14% Similarity=0.145 Sum_probs=222.0
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhh--ChhHH----HHHHHHHHHhCCCCchHHHHHHHHHHHcCCC
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECK--HLISL----ASVHSEILKSGFLSNTFTLNHLINCYVRLKK 77 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~--~~~~~----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 77 (605)
.+..+++.+.+.=++++|++.|+....-.-..+++-.. ..... .+-+-.|.+.| +.+..+| |.|.
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~ 194 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGA 194 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cccc
Confidence 35567777788888888888776655554444443321 11111 22222232222 2222333 4565
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039695 78 TQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157 (605)
Q Consensus 78 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 157 (605)
+.+ -+| +....+..+|.+||.|+++--..+.|.+++++-.....+.+..+||.+|.+.. +..++++..+|+..
T Consensus 195 vAd--L~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 195 VAD--LLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQ 267 (625)
T ss_pred HHH--HHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHh
Confidence 544 344 44445778999999999999999999999999999889999999999998754 33458899999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHH----HhhcC----CCChhhHHHHHHHHHHcCChhH-HHHHHHHHHHc--C-C
Q 039695 158 GFQYNLVVCSSLVDMYGKCNDVDGARRV----FDLMG----CRNVVSWTSIIVAHAQNAQGHE-ALEMFREFNYQ--S-R 225 (605)
Q Consensus 158 g~~~~~~~~~~Li~~y~~~g~~~~A~~~----~~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--~-~ 225 (605)
.+.||..|+|+++.+.++.|+++.|++. +.+|+ +|...+|.-+|..+.+.+++.+ |..++.++... | .
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 9999999999999999999998876654 44554 4899999999999999888755 45555555431 1 0
Q ss_pred CC---C-ChhHHHhHHHhhcccCchhhHHHHHHHHHHhC----CCCc---HhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 039695 226 DR---P-NQHMLASVINACASLGRLVSGKVAHGVVVRSG----CEFN---DVVASALVDMYAKCGSVNYSDKVFNRISN- 293 (605)
Q Consensus 226 ~~---p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 293 (605)
++ | |...|.+.++.|.+..+.+.|.++++...... +.++ ..-|..+.+..++...++.-...|+.|..
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 2 56678899999999999999999998776521 2333 23455677778888888888888888863
Q ss_pred ---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 039695 294 ---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN 330 (605)
Q Consensus 294 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 330 (605)
|+..+...++.+..-.|.++-.-+++..|+..|..-+
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 6777777778888888888888888888777654433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=6.8e-14 Score=151.10 Aligned_cols=422 Identities=9% Similarity=0.028 Sum_probs=305.8
Q ss_pred hhhccchHHHHHHHHHhhhCCCC--CChhhHHHHHHHhhChhHHHHHHHHHHHhCCCCc-h--HHHHHHHHHHHcCCChh
Q 039695 5 LTRNLIFTLAASSLTRQNKRSSC--HTKAHFIQQLQECKHLISLASVHSEILKSGFLSN-T--FTLNHLINCYVRLKKTQ 79 (605)
Q Consensus 5 l~~~~~~~~a~~~l~~m~~~g~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~li~~~~~~g~~~ 79 (605)
..++|+++.|+..|.+..+.... |....+..++...++...+...++..+ .|+ . ....++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 47899999999999998765322 112222333333333333344444443 332 2 23333356788889999
Q ss_pred HHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 039695 80 VARQLFDEMLE--P-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIET 156 (605)
Q Consensus 80 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 156 (605)
.|.++|+++.+ | ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999944 3 4667778889999999999999999999875 45656664444444445666669999999999
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhH--HHHHHHHHH---------cCC---hhHHHHHHHH
Q 039695 157 FGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSW--TSIIVAHAQ---------NAQ---GHEALEMFRE 219 (605)
Q Consensus 157 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~--~~li~~~~~---------~g~---~~~A~~~~~~ 219 (605)
.. +.+...+..++....+.|-...|.++..+-+. +...-| ...+.-.++ ..+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 85 66788889999999999999999999888764 111111 001111111 122 3456666666
Q ss_pred HHHcCCCCCCh-hHH----HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 039695 220 FNYQSRDRPNQ-HML----ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294 (605)
Q Consensus 220 m~~~~~~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 294 (605)
+...-+..|.. .-| .-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|..+|..+..+
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 65422122322 222 2345577888999999999999999998878889999999999999999999999988542
Q ss_pred ---------CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHhccCcHHHHH
Q 039695 295 ---------SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-----------KPND---VTFVGVLHACSHSGLVDEGI 351 (605)
Q Consensus 295 ---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~a~ 351 (605)
+......|.-+|...+++++|..+++++.+.-. .||+ ..+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 222346789999999999999999999987311 1222 23444566778899999999
Q ss_pred HHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 352 QHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 352 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
+.++.+.. ..| |......+.+.+...|.+.+|++.++... ..|+ +..+...++.++...++++.|..+.+.+.+
T Consensus 437 ~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 437 KKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999963 345 58889999999999999999999998755 3444 366777888889999999999999999999
Q ss_pred cCCCCCch
Q 039695 430 SNQQVANA 437 (605)
Q Consensus 430 ~~p~~~~~ 437 (605)
..|+++.+
T Consensus 513 ~~Pe~~~~ 520 (822)
T PRK14574 513 RSPEDIPS 520 (822)
T ss_pred hCCCchhH
Confidence 99999754
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.6e-12 Score=134.69 Aligned_cols=400 Identities=13% Similarity=0.130 Sum_probs=233.5
Q ss_pred CCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--h
Q 039695 59 LSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPN------VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF--T 130 (605)
Q Consensus 59 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~--t 130 (605)
..|+.+.+.|.+.|--.|+++.+..+...+...+ ..+|--+-++|-..|++++|...|.+..+. .||.+ .
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 4567788888888888888888888887774322 345777888888889999999888777664 34543 4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----CHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 039695 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN----DVDGARRVFDLMGCR---NVVSWTSIIVA 203 (605)
Q Consensus 131 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~ 203 (605)
+..+...+...|+++.+...|+.+.+.. +.+..+.-.|...|+..+ ..+.|..+......+ |...|-.+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4556777888889999988888888763 556667777777777664 445566665555432 33333333333
Q ss_pred HHHcCChhHHHHHHHHH----HHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh---CCCC------cHhHHHH
Q 039695 204 HAQNAQGHEALEMFREF----NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---GCEF------NDVVASA 270 (605)
Q Consensus 204 ~~~~g~~~~A~~~~~~m----~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~------~~~~~~~ 270 (605)
+-+. ++..++..|... ...+ ..+.....+.+.......|.++.|...+...... -..+ ++.+-..
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 2222 222223333222 1222 2233344444444444444444444444433332 0011 1111112
Q ss_pred HHHHHHhc----------------------------------CCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChh
Q 039695 271 LVDMYAKC----------------------------------GSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGR 313 (605)
Q Consensus 271 li~~y~~~----------------------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 313 (605)
|...+-.. +...+|...++...+ .|+..|+-+...|.....+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 22222222 334445555544432 34445555555555555555
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcc------------CcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhh
Q 039695 314 FSLDLFNEMISR-GIKPNDVTFVGVLHACSHS------------GLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGR 379 (605)
Q Consensus 314 ~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~------------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 379 (605)
.|.+-|...... ...+|.++..+|.+.|... +..++|+++|.+.++ ..| |...-+-+.-.++.
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhh
Confidence 555544444331 1225666665555544321 335567777776642 333 46666777777788
Q ss_pred cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCChhHHHHH
Q 039695 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN--QQVANAYVTLSNTYALAGEWENVHSL 457 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~ 457 (605)
.|++.+|.++|.+....-+....+|-.+..+|...|++..|+++|+..++.. .+++.+...|+.++.+.|+|.+|.+.
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8888888888877652211125678888888888888888888888877643 34455677788888888888888887
Q ss_pred HHHHHhCCC
Q 039695 458 RSEMKRTGI 466 (605)
Q Consensus 458 ~~~m~~~~~ 466 (605)
........+
T Consensus 739 ll~a~~~~p 747 (1018)
T KOG2002|consen 739 LLKARHLAP 747 (1018)
T ss_pred HHHHHHhCC
Confidence 776665443
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=2.7e-10 Score=113.42 Aligned_cols=409 Identities=9% Similarity=0.038 Sum_probs=302.3
Q ss_pred HHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCC------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-
Q 039695 54 LKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML------EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP- 126 (605)
Q Consensus 54 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p- 126 (605)
...|+..+..-|-.=...+-+.|.+-.++.+..... +.--.+|+.--..|.+.+.++-|..+|...++. .|
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~ 548 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPC 548 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccc
Confidence 344555555555555555555555555555554431 122346777777777777777777777777663 23
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 039695 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVA 203 (605)
Q Consensus 127 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 203 (605)
+...|......--..|..+.-..+++.++..- +.....|-....-+-..|++..|+.++++.-+ .+...|-+-+..
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL 627 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44455555555556677788888888877653 44555666666777778898888888777643 356678888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 039695 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283 (605)
Q Consensus 204 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 283 (605)
-..+..+++|..+|.+.... .|+...|..-++.---.+..++|.++++..++.- +.-...|-.+...+-+.++++.
T Consensus 628 e~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHH
Confidence 88888999999999887764 4666666665555566788889999888887753 5556778888888888899999
Q ss_pred HHHHHhccCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 039695 284 SDKVFNRISN--P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 284 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 360 (605)
|+..|..-.+ | .+..|-.+...=-+.|+.-+|..++++....+.+ |...|...+..-.+.|..++|..+..+..++
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9988887765 4 3456777777777788899999999888776433 6788888889889999999999888877654
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 361 YGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 361 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
.+.+...|.--|-+..+.++-..+.+.+++-. .| +.+.-++...+....+++.|..-|.++++.+|++..+|..
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d--phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD--PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHHHHHHhcc--CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 34457788888888888888777777777664 34 6677777788888899999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeC
Q 039695 441 LSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478 (605)
Q Consensus 441 l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 478 (605)
+-..+.+.|.-++-.+++.+..... |.-|..|..+.
T Consensus 857 fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 9999999999999999999887754 45677887543
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=6.3e-12 Score=129.54 Aligned_cols=330 Identities=13% Similarity=0.116 Sum_probs=223.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChhHHHHHH
Q 039695 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM---GCRNVVSWTSIIVAHAQNAQGHEALEMF 217 (605)
Q Consensus 141 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 217 (605)
.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+--. ...|..-|-.+..-..+.|.+++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377777777777777664 455666777777777777777776655433 2345566666666667777777777777
Q ss_pred HHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHH----HHHHHHHHhcCCHHHHHHHHhccCC
Q 039695 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVA----SALVDMYAKCGSVNYSDKVFNRISN 293 (605)
Q Consensus 218 ~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~~~~ 293 (605)
.+..+.. +++...+-.-...|-+.|+...|..-+.++.....+.|..-. ...+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7766653 445555555556666677777777777666665433232222 2234445555666667666665543
Q ss_pred -----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---------------------------CCHHHHHHHHHHH
Q 039695 294 -----PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK---------------------------PNDVTFVGVLHAC 341 (605)
Q Consensus 294 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------------------pd~~t~~~ll~a~ 341 (605)
-+...+|.++..|.+...++.|......+...... ++... ..+.-+.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 23445677777777777777777777766652222 22222 1222233
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCchhhHHHHHHHHHHHcCChH
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIP--DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD-PDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
.+....+....+...+ .+..+.| +...|.-+.++|.+.|++.+|++++..+... +..+..+|--+..++...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l-~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFL-VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHH-HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4444444444444444 3335444 4888999999999999999999999987633 3434779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 039695 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 475 (605)
+|.+.+++++...|++..+-..|...|-+.|+.++|.+++..+..-+....+++.|-
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999998874444344556664
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=5.4e-15 Score=143.40 Aligned_cols=255 Identities=17% Similarity=0.149 Sum_probs=113.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHh-HHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 039695 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS-VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279 (605)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 279 (605)
...+.+.|++++|++++.+..... .+|+...|-. +...+...++.+.|...++.+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 334445555555555554322221 1233333332 2233344556666666666666554 2255566666666 6778
Q ss_pred CHHHHHHHHhccC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 039695 280 SVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDS 356 (605)
Q Consensus 280 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 356 (605)
++++|.+++...- .++...+..++..+.+.++++++..++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877664 3566778888888999999999999999987632 345777788888889999999999999999
Q ss_pred HHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 357 MYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQV--DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 357 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
.++ ..|+ ......++..+...|+.+++.++++.... ..+ +..|..+..++...|+.+.|...++++.+..|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~--~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD--PDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS--CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH--HHHHHHHHHHhcccccccccccccccccccccc
Confidence 874 4675 77888999999999999998888776542 234 678999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 434 VANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 434 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
|+.....+++++...|+.++|.+++++..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999887643
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.1e-10 Score=121.49 Aligned_cols=367 Identities=10% Similarity=0.046 Sum_probs=237.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 039695 91 PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW--PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSS 168 (605)
Q Consensus 91 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 168 (605)
.|++.-|.|-+-|.-.|++..++.+...+...... .-..+|-.+.+++-..|++++|.+.|.+..+..-..-+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46777777888888888888888888777664311 1234577778888888888888888887776542222344456
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcC----ChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGC--R-NVVSWTSIIVAHAQNA----QGHEALEMFREFNYQSRDRPNQHMLASVINACA 241 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 241 (605)
|..+|.+.|+++.|...|+.+-. | +..+...|...|+..+ ..++|..++.+.... .+.|...|..+...+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 77888888888888888887754 3 3445555556666554 456666666666553 2446666666666555
Q ss_pred ccCchhhHHHHHHH----HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CCcc------hHHHHHH
Q 039695 242 SLGRLVSGKVAHGV----VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-------PSVV------TYTSMIV 304 (605)
Q Consensus 242 ~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~ 304 (605)
...-+.. ...+.. +...+-++.+.+.|.+...+...|+++.|...|..... +|.. +--.+..
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 4433332 444443 33456567788889999999999999999998887652 2221 1122344
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIKPNDV-TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRL 383 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 383 (605)
.+-..++.+.|.+.|...... .|+-+ .|..++......+...+|...+....... ..++..++-+.+.+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhh
Confidence 455567788888888888774 44433 23333322223466777777777765432 33344555566677777777
Q ss_pred HHHHHHHH----hCCCCCCchhhHHHHHHHHHHH------------cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039695 384 DEAYKLAK----SIQVDPDGGPLLWGTLLSASRL------------HGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447 (605)
Q Consensus 384 ~~A~~~~~----~m~~~p~~~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 447 (605)
.-|.+-|. +....+| +.+.-+|.+.|.+ .+..+.|+++|.++++.+|.|..+-+.++-+++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D--~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTD--AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCc--hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 66666333 3333345 5666666665532 2345678888888888888887777778888888
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 039695 448 AGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~ 466 (605)
.|++.+|..+|.++++...
T Consensus 659 kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS 677 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh
Confidence 8888888888888887654
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=5.6e-10 Score=105.83 Aligned_cols=405 Identities=11% Similarity=0.092 Sum_probs=280.0
Q ss_pred hChhHHHHHHHHHHHhCCCCchHHHHHHHHHH--HcCCChhHH-HHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHH
Q 039695 41 KHLISLASVHSEILKSGFLSNTFTLNHLINCY--VRLKKTQVA-RQLFDEML---EPNVVSYTSLMAGYINMGQPQIALL 114 (605)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A-~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~a~~ 114 (605)
+...+.--+++.|...|...+..+--.|+..- -...++.-| ++.|-.|. +.+..+|- .|...+ -
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK--------~G~vAd--L 198 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK--------SGAVAD--L 198 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc--------cccHHH--H
Confidence 33444467788888888877777666665432 233333333 34455553 34555653 344333 2
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC----
Q 039695 115 LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG---- 190 (605)
Q Consensus 115 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---- 190 (605)
+|+. .+-+..||.++|.+.++-...+.|.+++.+......+.+..++|.+|.+-+-.-+ .++..+|.
T Consensus 199 ~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 199 LFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred HHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 3332 2236789999999999999999999999999888778999999999976554433 44555553
Q ss_pred CCChhhHHHHHHHHHHcCChhH----HHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhh-HHHHHHHHHH----hCC
Q 039695 191 CRNVVSWTSIIVAHAQNAQGHE----ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS-GKVAHGVVVR----SGC 261 (605)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~----~g~ 261 (605)
.||..|+|+++++..+.|+++. |++++.+|++.| +.|...+|-.+|.-+.+.++... +..+...+.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 5999999999999999998764 578889999999 99999999999998888877644 3344444433 112
Q ss_pred ----CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 039695 262 ----EFNDVVASALVDMYAKCGSVNYSDKVFNRISN--------PS---VVTYTSMIVGAAKYGLGRFSLDLFNEMISRG 326 (605)
Q Consensus 262 ----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 326 (605)
+.|...+..-++.+....+.+-|.++-.-... ++ ..-|..+....++....+.-+..|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 33556677778888899999999888665542 22 2346677888889999999999999999888
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcC-C--------HHH-----HHHHHHh
Q 039695 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG-R--------LDE-----AYKLAKS 392 (605)
Q Consensus 327 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~~ 392 (605)
+-|+..+...+++|....+.++-..+++..+ ..+|..-+...-.-+...+++.. . +.. |..+++.
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999988888888 55665444444444444444443 1 111 1122211
Q ss_pred CC------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 393 IQ------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN---QQVAN--AYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 393 m~------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
.. ...+..+...+..+..+.+.|..++|.+++..+.... |..+. +..-+.+.-.+......|..+++.|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 0112225567777777889999999999998887543 44332 2334555556677788888888888
Q ss_pred HhCCC
Q 039695 462 KRTGI 466 (605)
Q Consensus 462 ~~~~~ 466 (605)
...+.
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 76655
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2.7e-11 Score=123.13 Aligned_cols=285 Identities=12% Similarity=0.025 Sum_probs=173.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhCCCHHHHH
Q 039695 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVC--SSLVDMYGKCNDVDGAR 183 (605)
Q Consensus 106 ~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~y~~~g~~~~A~ 183 (605)
.|++++|.+.+....+.+-.| ...|.....+....|+.+.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 477777776666544432111 122333334446677777777777777654 3443322 23356777777777777
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhC
Q 039695 184 RVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260 (605)
Q Consensus 184 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 260 (605)
..++++.+ .+......+...|.+.|++++|++++..+.+.+ ..+ ......+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~-~~~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGD-EEHRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCC-HHHHHHHH-----------------------
Confidence 77777654 345566677777777788888887777777665 221 11111000
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 039695 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGV 337 (605)
Q Consensus 261 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 337 (605)
..++..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. +||.... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 00111222222223334445555555542 45556667777777778888888888777663 4444221 2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcC
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g 415 (605)
+.+....++.+++.+..+...++ .|+ ...+.++...+.+.|++++|.+.|+.. ...|+ ...+..|...+...|
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g 375 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD--AYDYAWLADALDRLH 375 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcC
Confidence 33444557788888887777543 343 666777888888888888888888774 35577 777777888888888
Q ss_pred ChHHHHHHHHHHHhcC
Q 039695 416 RVDIAVEASNQLIESN 431 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~ 431 (605)
+.++|.+.+++.+.+-
T Consensus 376 ~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 376 KPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHhhh
Confidence 8888888888877643
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4e-11 Score=114.04 Aligned_cols=269 Identities=11% Similarity=0.082 Sum_probs=186.7
Q ss_pred HHhCCCHHHHHHHHhhcCCCChhhHHH----HH-HHHHH-cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch
Q 039695 173 YGKCNDVDGARRVFDLMGCRNVVSWTS----II-VAHAQ-NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~~~~~~~~~----li-~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 246 (605)
|.+.|+++.|.+++.-....|..+-++ |- --|.+ ..++..|.+.-+...... +-|....+.--+.....|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcH
Confidence 456666666666665554433322211 11 11222 223444444443333221 22333333333344557888
Q ss_pred hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 323 (605)
+.|...+.+.+...-.-....|| +.-.+-+.|++++|...|-++. ..++...-.+.+.|-...++.+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 88888888888765433334444 3334667889999999887764 3566666677788888889999999987766
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchh
Q 039695 324 SRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGP 401 (605)
Q Consensus 324 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~ 401 (605)
.. ++.|+.....|...|-+.|+-.+|.+.+-. .+..-| +.++..-|..-|....-+++|+..|++.. ..|+ .
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~yd---syryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~--~ 659 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYD---SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN--Q 659 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhh---cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc--H
Confidence 54 555677888888999999999999887763 345545 58888888888899999999999998854 6788 8
Q ss_pred hHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 402 LLWGTLLSAS-RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 402 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
.-|..++..| ++.|++..|..+++......|.+......|+.++...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999887665 678999999999999999999999999999998887774
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=2.6e-09 Score=106.56 Aligned_cols=422 Identities=11% Similarity=0.089 Sum_probs=328.3
Q ss_pred hccchHHHHHHHHH----hhhCCCCCChhhHHHHHHHhhChhHH---HHHHHHHHHhCCCCc--hHHHHHHHHHHHcCCC
Q 039695 7 RNLIFTLAASSLTR----QNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSN--TFTLNHLINCYVRLKK 77 (605)
Q Consensus 7 ~~~~~~~a~~~l~~----m~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~ 77 (605)
++|+.+-..+++.+ ++..|+..+...+..--.+|-..+.. +.+....+..|+... ..+|+.-.+.|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 45666666665554 55667888888888777778777665 777777777776533 3578888899999999
Q ss_pred hhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 039695 78 TQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHI 154 (605)
Q Consensus 78 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 154 (605)
++-|+.+|....+ .+...|......=-..|..++-..+|++....- +-....|....+-.-..|+...|+.++..+
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9999999987744 356678877777677899999999999998863 224445555556667789999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCh-h
Q 039695 155 ETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ-H 231 (605)
Q Consensus 155 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~ 231 (605)
.+.. +.+..+|-+-+..-..+..++.|+.+|.+... +....|.--+..---.+..++|++++++..+. -|+- .
T Consensus 611 f~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~K 686 (913)
T KOG0495|consen 611 FEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHK 686 (913)
T ss_pred HHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHH
Confidence 9876 44778999999999999999999999998765 66677776666666788999999999988874 3554 4
Q ss_pred HHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHH
Q 039695 232 MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAK 308 (605)
Q Consensus 232 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 308 (605)
.|..+-..+-+.++++.|...|..=.+. ++..+..|-.|...--+.|++-.|+.+|++..- .|...|-..|..-.+
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 5556666777778888887776544432 456677899999999999999999999998763 466889999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 039695 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 388 (605)
.|+.++|..+..+..+. .+-+...|..-|-...+.++-......+ + ...-|+.+.-.+..++-...+++.|.+
T Consensus 766 ~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL----k--kce~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL----K--KCEHDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred cCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH----H--hccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888875 5556677777777666666644443333 3 235566777778888999999999999
Q ss_pred HHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 039695 389 LAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 389 ~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
.|.+.. ..|+ +..+|.-+...+.++|.-+.-.+++.+....+|.....|....
T Consensus 839 Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 839 WFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 998854 4554 3668999999999999999999999999999999877776553
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=2.8e-13 Score=131.43 Aligned_cols=254 Identities=11% Similarity=0.057 Sum_probs=83.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 039695 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT-VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178 (605)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 178 (605)
-..+.+.|++++|++++++-.....+|+...|-. +...+...++.+.|.+.++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 3444555666666666644333322233333322 2333444566666666666666554 2244455555555 56666
Q ss_pred HHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHH
Q 039695 179 VDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256 (605)
Q Consensus 179 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 256 (605)
+++|.++++..-+ ++...+..++..+.+.++++++.+++.........+++...|......+.+.|+.++|...+...
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666654422 44555666666666667777777766665543323445555666666666666666666666666
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 039695 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333 (605)
Q Consensus 257 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 333 (605)
++.. |.|..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|++++|+..|++.... .+.|..+
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccccccc
Confidence 6654 3355666667777777777766555555443 245566777777777777777777777776664 2335666
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
...+..++...|+.++|.++..++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 667777777777777777776655
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=4.3e-11 Score=121.61 Aligned_cols=276 Identities=12% Similarity=0.040 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHhhcCCC--ChhhHHHH-HHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHH--hHHHhhcccCchhhHH
Q 039695 176 CNDVDGARRVFDLMGCR--NVVSWTSI-IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA--SVINACASLGRLVSGK 250 (605)
Q Consensus 176 ~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~--~ll~a~~~~~~~~~a~ 250 (605)
.|+++.|++.+...+.. ++..+..+ .....+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777666655442 12222222 3333667777777777777754 234443332 2244556677777777
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc-----------hHHHHHHHHHHcCChhHHHHHH
Q 039695 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV-----------TYTSMIVGAAKYGLGRFSLDLF 319 (605)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~ 319 (605)
..++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776665 556677777788888888888888777777642221 2333344444455566666777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 039695 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD 398 (605)
Q Consensus 320 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 398 (605)
+.+... .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......++.+++++.+++.. ..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 766443 345777888899999999999999999998864 35554322 2223335599999999998754 4454
Q ss_pred chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 399 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
++..+.++...|...++++.|.+.|+++++..|++ ..|..|..++.+.|+.++|.+++++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 47788899999999999999999999999999986 5678999999999999999999986643
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.7e-11 Score=122.71 Aligned_cols=276 Identities=16% Similarity=0.107 Sum_probs=183.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC------CChhhHHHHHHHHHHcCChhHHHHH
Q 039695 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC------RNVVSWTSIIVAHAQNAQGHEALEM 216 (605)
Q Consensus 143 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~ 216 (605)
+..+|...|+.+... ..-...+...+..+|...+++++|+++|+.+.. .+...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345666666664333 233335666677777777777777777777654 355666666554332 122222
Q ss_pred HH-HHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 039695 217 FR-EFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP- 294 (605)
Q Consensus 217 ~~-~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~- 294 (605)
+. ++.... +..+.+|-++.+.|.-.++.+.|.+.|++..+-
T Consensus 409 Laq~Li~~~-------------------------------------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 409 LAQDLIDTD-------------------------------------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred HHHHHHhhC-------------------------------------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 22 222221 223445555555566666666666666665532
Q ss_pred --CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHH
Q 039695 295 --SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHY 370 (605)
Q Consensus 295 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~ 370 (605)
...+|+.+..-+.....+|.|...|+..+. +.|.. ..|..+...|.+.++++.|+-.|+.+. .+.|. .+..
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~ 526 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVIL 526 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHH
Confidence 345666666666667777777777776654 33322 345566777888888888888888765 67776 6667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 039695 371 TCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449 (605)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 449 (605)
.++...+-+.|+.|+|++++++.. ..|. ++..----+..+...+++++|.+.++++.++-|++..+|..++.+|-+.|
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 777888889999999999998853 3332 14443344555667889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 039695 450 EWENVHSLRSEMKRTGI 466 (605)
Q Consensus 450 ~~~~a~~~~~~m~~~~~ 466 (605)
+.+.|..-|.-+.+.+.
T Consensus 606 ~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 606 NTDLALLHFSWALDLDP 622 (638)
T ss_pred cchHHHHhhHHHhcCCC
Confidence 99999988877766544
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=4.3e-11 Score=113.82 Aligned_cols=409 Identities=12% Similarity=0.129 Sum_probs=267.3
Q ss_pred HHHHHHHHhCCCCchHHHH-HHHHHHHcCCChhHHHHHHhcCCC--CC------hhhHHHHHHHHHhcCChhHHHHHHHH
Q 039695 48 SVHSEILKSGFLSNTFTLN-HLINCYVRLKKTQVARQLFDEMLE--PN------VVSYTSLMAGYINMGQPQIALLLFQK 118 (605)
Q Consensus 48 ~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~m~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~ 118 (605)
..++.+++...-|+.-... .+-+.|.+...+..|++.++.... |+ +...|.+--.|.+.|.++.|+..|+.
T Consensus 222 ntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh 301 (840)
T KOG2003|consen 222 NTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDH 301 (840)
T ss_pred hhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHH
Confidence 3445555665556554322 233556777888899888764421 22 23455556678899999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--------HHHHHHHHHHhCCC-----------H
Q 039695 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV--------VCSSLVDMYGKCND-----------V 179 (605)
Q Consensus 119 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--------~~~~Li~~y~~~g~-----------~ 179 (605)
..+. .||-.+-..|+-++...|+-++.++.|..++.....+|.. .-..|++--.+... .
T Consensus 302 ~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~a 379 (840)
T KOG2003|consen 302 CMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADA 379 (840)
T ss_pred HHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhH
Confidence 8774 5787765556666667899999999999998753322221 11222222222211 1
Q ss_pred HHHH----HHHhhcCCCChh---hHH------------------HHHHHHHHcCChhHHHHHHHHHHHcCCCCCChh--H
Q 039695 180 DGAR----RVFDLMGCRNVV---SWT------------------SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH--M 232 (605)
Q Consensus 180 ~~A~----~~~~~m~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--t 232 (605)
+++. ++..-+..||-. -|- .-...|.++|+++.|++++.-..+.. .+.-.. +
T Consensus 380 ek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd-nk~~saaa~ 458 (840)
T KOG2003|consen 380 EKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD-NKTASAAAN 458 (840)
T ss_pred HHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc-chhhHHHhh
Confidence 1111 111111122211 010 01234789999999999998876554 222111 1
Q ss_pred HHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHH---HHHHc
Q 039695 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIV---GAAKY 309 (605)
Q Consensus 233 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~ 309 (605)
-..++.-+....++..|.++-+..+... .-+....+.-.+.-...|++++|.+.+++....|...-.+|.. .+-..
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~ 537 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL 537 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh
Confidence 1222222223346677777766665432 2233333333344456899999999999999877766555543 46778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHH
Q 039695 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 310 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (605)
|+.++|++.|-++... +.-+......+.+.|....+..+|++++.+.. .+.|+ +.+..-|.+.|-+.|+-..|.+
T Consensus 538 ~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred cCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 9999999999887653 34466777788888988999999999988764 55664 8999999999999999999988
Q ss_pred HH-HhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 389 LA-KSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 389 ~~-~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.. +...--|. +..+..-|..-|....=.+.++..|+++.-+.|+....-..+..++.+.|+++.|..+++.+..+-
T Consensus 614 ~~ydsyryfp~-nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 614 CHYDSYRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhhhcccccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 74 33332222 255555566777777778999999999998899876555566677889999999999999886653
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.9e-10 Score=108.04 Aligned_cols=193 Identities=10% Similarity=0.093 Sum_probs=157.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPS---VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
+.|...+.+.|+-.++.++|...|++..+-| ...|+.|..-|....+...|++-++..++- .+-|-..|-.|..+|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHH
Confidence 3456667777888888888888888887533 467999999999999999999999999885 334788999999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHH
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIA 420 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a 420 (605)
.-.+.+.-|+-+|++.. .+.|+ ...|.+|.+.|.+.+++++|++-|.....-.|.+...+..|...+.+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999774 56775 899999999999999999999999886533342357899999999999999999
Q ss_pred HHHHHHHHh-------cCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 421 VEASNQLIE-------SNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 421 ~~~~~~~~~-------~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
.+.+++-++ .+|....+-..|..-+-+.+++++|...-...
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999998886 23444445667888889999999998876544
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=2.6e-10 Score=116.56 Aligned_cols=290 Identities=10% Similarity=-0.006 Sum_probs=153.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 039695 105 NMGQPQIALLLFQKMLGNLVWPNEF-TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183 (605)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 183 (605)
..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 357777777777665553 23322 223334455566777777777766655432222223334456666667777777
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhC
Q 039695 184 RVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG 260 (605)
Q Consensus 184 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 260 (605)
..++.+.+ .+...+..+...|.+.|++++|.+++....+.+ +. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CC-CHHHHHHHHH----------------------
Confidence 66666644 244455566666666666666666666666554 21 2211111000
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH---
Q 039695 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTF--- 334 (605)
Q Consensus 261 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--- 334 (605)
..+..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111111223333444444442 35666777777777777777887877777764 3333210
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCchhhHHHHHHHHH
Q 039695 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS---IQVDPDGGPLLWGTLLSAS 411 (605)
Q Consensus 335 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~~~ll~~~ 411 (605)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....|+ ...+..+...+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~--~~~~~~La~ll 380 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD--ANDLAMAADAF 380 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC--HHHHHHHHHHH
Confidence 1111122234566666666666543322222224455666666777777777777762 234555 55566666667
Q ss_pred HHcCChHHHHHHHHHHHh
Q 039695 412 RLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~ 429 (605)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777666554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.6e-10 Score=108.96 Aligned_cols=385 Identities=16% Similarity=0.137 Sum_probs=239.7
Q ss_pred HHHHHcCCChhHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCCh
Q 039695 69 INCYVRLKKTQVARQLFDEM--LEPN-VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF-TFATVIKACSMLADL 144 (605)
Q Consensus 69 i~~~~~~g~~~~A~~~f~~m--~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~ 144 (605)
-+-|-+.|.+++|++.+.+. ..|| ++-|...-.+|...|+++++.+--.+.++ +.|+-. .+..-.+++-..|++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccH
Confidence 34566778888888888877 3466 77788888888888888888777666665 345432 444444566666776
Q ss_pred HHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHH----------------------
Q 039695 145 ITGKQIHTHIE-TFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWT---------------------- 198 (605)
Q Consensus 145 ~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~---------------------- 198 (605)
.++..=..-.- -.|+.... + ..+++--.+.--...+.+-+.+-.. |+....+
T Consensus 200 ~eal~D~tv~ci~~~F~n~s-~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNAS-I-EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred HHHHHhhhHHHHhhhcccch-h-HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 66553221111 11111110 0 0011100011111222222221111 1111111
Q ss_pred -HHHHHHHH--cC---ChhHHHHHHHHHHHcCCCCCChh---------HHHhHHHh--hcccCchhhHHHHHHHHHHhCC
Q 039695 199 -SIIVAHAQ--NA---QGHEALEMFREFNYQSRDRPNQH---------MLASVINA--CASLGRLVSGKVAHGVVVRSGC 261 (605)
Q Consensus 199 -~li~~~~~--~g---~~~~A~~~~~~m~~~~~~~p~~~---------t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~ 261 (605)
.+..++-. .+ .+.+|...+.+-.......++.. .-..++.+ ..-.|+.-.+.+-++.+++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 11111100 11 23333333322211110111111 11111111 2234677788888888887653
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGV 337 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~l 337 (605)
. +...|--+..+|....+.++..+.|++..+ .|..+|..-.+.+.-.+++++|..=|++.+. +.| +...|..+
T Consensus 358 ~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl 434 (606)
T KOG0547|consen 358 A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQL 434 (606)
T ss_pred c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHH
Confidence 3 333466777889999999999999998874 4556777777777778899999999999887 445 45667777
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCc-------hhhHHHHHHH
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDG-------GPLLWGTLLS 409 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~~~~~~~ll~ 409 (605)
-.+..+.+.+++++..|++..+++ +.-+++|+-....+...++++.|.+.|+.. ...|.. .+.+-.+++-
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 777778899999999999997653 334889999999999999999999999873 333320 1333334443
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.- -.+++..|+.++.++++++|....+|..|+.+-.+.|+.++|.++|++-..
T Consensus 513 ~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 513 LQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33 338999999999999999999999999999999999999999999987643
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.3e-10 Score=118.86 Aligned_cols=280 Identities=10% Similarity=0.044 Sum_probs=187.6
Q ss_pred cCCChhHHHHHHhcCCC--CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHhccCChHHHH
Q 039695 74 RLKKTQVARQLFDEMLE--PNV-VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF--TFATVIKACSMLADLITGK 148 (605)
Q Consensus 74 ~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~ 148 (605)
..|+++.|.+.+.+..+ |+. ..+-.......+.|+++.|.+.|.+..+.. |+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 57999999999988744 433 233344566777899999999999987643 4543 3333467778899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhhHHHHH----HHHHHcCChhHHHHHHHHHH
Q 039695 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR---NVVSWTSII----VAHAQNAQGHEALEMFREFN 221 (605)
Q Consensus 149 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li----~~~~~~g~~~~A~~~~~~m~ 221 (605)
..++.+.+.. +.+..+...+..+|.+.|++++|.+.++.+.+. +...+..+- .+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999986 557788899999999999999999999988753 222222111 11122222222222222222
Q ss_pred HcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcch-
Q 039695 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVT- 298 (605)
Q Consensus 222 ~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~- 298 (605)
... | + ..+.++..+..+...+...|+.++|.+++++..+ ||...
T Consensus 253 ~~~---p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 253 KNQ---P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHC---C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 211 1 0 0123556666677777777777777777777654 33321
Q ss_pred --HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 039695 299 --YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND---VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV 373 (605)
Q Consensus 299 --~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 373 (605)
+..........++.+.+.+.+++..+. .|+. ....++...|.+.|++++|.+.|+.. ......|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a-~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV-AACKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-HHhhcCCCHHHHHHH
Confidence 122222233356777888888777763 4443 44557777888899999999999853 233567888888899
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 039695 374 VDMLGRTGRLDEAYKLAKS 392 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~ 392 (605)
...+.+.|+.++|.+++++
T Consensus 377 a~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999998876
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=8.7e-10 Score=114.12 Aligned_cols=315 Identities=12% Similarity=0.082 Sum_probs=220.1
Q ss_pred cCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHH
Q 039695 74 RLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQ 149 (605)
Q Consensus 74 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~ 149 (605)
..|+.++|.+++.++.+ .+..+|.+|-..|-+.|+.++++..+-..-. +.| |..-|..+-......|.++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34999999999998843 4678899999999999999998877644433 333 56678888888888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh-hh-------HHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV-VS-------WTSIIVAHAQNAQGHEALEMFREFN 221 (605)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-~~-------~~~li~~~~~~g~~~~A~~~~~~m~ 221 (605)
.+.++++.. +++....---..+|-+.|+...|.+-|.++-..++ +. --.++..|...++-+.|++.+....
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999886 56666666677889999999999888888755222 11 1123555666777788888888776
Q ss_pred HcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh---------------------------CCCCcHhH-HHHHHH
Q 039695 222 YQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---------------------------GCEFNDVV-ASALVD 273 (605)
Q Consensus 222 ~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~ 273 (605)
..+.-..+...++.++..+.+...++.+.......... +.+++..+ ...+--
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 64434556666777777777777777777665555441 22333333 222222
Q ss_pred HHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 039695 274 MYAKCGSVNYSDKVFNRIS----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349 (605)
Q Consensus 274 ~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 349 (605)
...+.+...++..-|-... ..++..|.-+..+|.+.|++.+|+.+|..+...-..-+...|..+..++...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 2233444444444433222 134456777778888888888888888888875444456677788888888888888
Q ss_pred HHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 039695 350 GIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394 (605)
Q Consensus 350 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (605)
|.+.|+..+ ...|+ ...--.|...|-+.|+.++|.+.+..+.
T Consensus 468 A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 468 AIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 888888776 44565 5666677778888888888888888764
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.7e-08 Score=97.13 Aligned_cols=402 Identities=11% Similarity=0.102 Sum_probs=289.7
Q ss_pred CchHHHHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039695 60 SNTFTLNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136 (605)
Q Consensus 60 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~ 136 (605)
.+...|-.....=-..+++..|+.+|++... +++..|---+..=.++..+..|..++++....=...|..=| --+-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHH
Confidence 3444554444444456788899999998754 67778888888889999999999999998774222233322 2233
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChhHHH
Q 039695 137 ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG--CRNVVSWTSIIVAHAQNAQGHEAL 214 (605)
Q Consensus 137 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 214 (605)
.=-..|++..|.++|+.-.+ ..|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...-=.++|....|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 33467999999999998876 58999999999999999999999999999864 599999998888888999999999
Q ss_pred HHHHHHHHcCCCCCChhHHHhHHHhh----cccCchhhHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHH-
Q 039695 215 EMFREFNYQSRDRPNQHMLASVINAC----ASLGRLVSGKVAHGVVVRSGCEFN--DVVASALVDMYAKCGSVNYSDKV- 287 (605)
Q Consensus 215 ~~~~~m~~~~~~~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~- 287 (605)
.+|....+.- .|...-..+..++ .....++.|.-++...+..- +.+ ...|..+...--+-|+....+.+
T Consensus 228 ~VyerAie~~---~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 228 SVYERAIEFL---GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9998876532 2333333333333 34567788888888888753 333 45666666655556665443333
Q ss_pred -------HhccCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCcH
Q 039695 288 -------FNRISNP---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND-------VTFVGVLHAC---SHSGLV 347 (605)
Q Consensus 288 -------~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~g~~ 347 (605)
++.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.+| ....++
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2223333 3456666677777789999999999998875 66632 2232222222 346788
Q ss_pred HHHHHHHHHHHHhcCCCCc-HHHHHHHHHHH----hhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHH
Q 039695 348 DEGIQHLDSMYRKYGIIPD-AKHYTCVVDML----GRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAV 421 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~ 421 (605)
+.+.++|+..+ .+.|. ..++.-+--+| .|+.++..|.+++.. +..-|. ..++...|..-.+.++++...
T Consensus 383 ertr~vyq~~l---~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK--~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 383 ERTRQVYQACL---DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK--DKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHHHHHHHHHH---hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHhhHHHHH
Confidence 89999998885 35554 55665555554 467889999998876 345577 788888888888999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 039695 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSW 474 (605)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 474 (605)
.++++.++..|.+..+|...+..-...|++|.|..+|+...+....--|-.-|
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999998888888888888999999999998887765433333333
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=7.6e-10 Score=101.44 Aligned_cols=216 Identities=11% Similarity=0.043 Sum_probs=130.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCCHHHH
Q 039695 106 MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY---NLVVCSSLVDMYGKCNDVDGA 182 (605)
Q Consensus 106 ~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A 182 (605)
+.++++|+++|-+|.+.... +..+..+|-+.+-+.|..+.|..+|+.+.++.--+ -....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46788999999999884321 33455677788889999999999999888752111 122445677788899999999
Q ss_pred HHHHhhcCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChh----HHHhHHHhhcccCchhhHHHHHHH
Q 039695 183 RRVFDLMGCRNV---VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH----MLASVINACASLGRLVSGKVAHGV 255 (605)
Q Consensus 183 ~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~ 255 (605)
+.+|..+.+... .+..-|+..|-+..+|++|++.-+++.+.+ -++..+ .|..+........+.+.|...+..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999877333 355668889999999999999999888766 333322 233344444444455555555555
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc----chHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV----VTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 256 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++....+.++.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 54443 22333333344444444444444444444443222 1223333444444444444444444433
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.6e-12 Score=88.75 Aligned_cols=50 Identities=32% Similarity=0.620 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039695 91 PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140 (605)
Q Consensus 91 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 140 (605)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1e-10 Score=117.22 Aligned_cols=246 Identities=12% Similarity=0.098 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHH-HH
Q 039695 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG--CEFNDVVASALVDMYAKCGSVN-YS 284 (605)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~-~A 284 (605)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+--+-+.=.+. -|
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3567888888885443 33444666777888889999999999999888753 1224556665543322211111 12
Q ss_pred HHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 039695 285 DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363 (605)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 363 (605)
..+.+ +....+.+|-++.+.|.-+++.+.|++.|++.++ +.| ..++|+.+-.-+.....+|.|...|+..+ +
T Consensus 411 q~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~- 483 (638)
T KOG1126|consen 411 QDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G- 483 (638)
T ss_pred HHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c-
Confidence 22222 2235678999999999999999999999999988 556 67888888777888889999999999764 4
Q ss_pred CCcHHHHH---HHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 364 IPDAKHYT---CVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 364 ~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
.++.+|+ -|.-.|.+.++++.|+-.|++.. +.|. +.+....+...+.+.|+.++|++++++++.++|.++-.-.
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 4445555 45677999999999999999854 5564 3677778888899999999999999999999999999989
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 440 TLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 440 ~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
..+..+...+++++|.+.++++++-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.8e-09 Score=104.01 Aligned_cols=393 Identities=10% Similarity=0.005 Sum_probs=269.3
Q ss_pred CchHHHHHHHHHHHcCCChhHHHHHHhc--CCCCChhhHHHHHHHHHhcCChhHHHHHHH----HHHhC---------CC
Q 039695 60 SNTFTLNHLINCYVRLKKTQVARQLFDE--MLEPNVVSYTSLMAGYINMGQPQIALLLFQ----KMLGN---------LV 124 (605)
Q Consensus 60 ~~~~~~~~li~~~~~~g~~~~A~~~f~~--m~~~~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~---------g~ 124 (605)
-|+..---+.++|.-.|+.+.|..+... +.+.|..........+.+..++++|+.++. .+..- -+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l 126 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL 126 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhcee
Confidence 3444334466667666777777766653 456777787878888888888888888777 22110 01
Q ss_pred CCChhh----HHHHH-------HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh------------------
Q 039695 125 WPNEFT----FATVI-------KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK------------------ 175 (605)
Q Consensus 125 ~pd~~t----~~~ll-------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~------------------ 175 (605)
.+|..- -+.-. +.+....+.++|+..+.++.... +..+.++...-..
T Consensus 127 ~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D----~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 127 ELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD----AKCFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred ccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 111111 11111 23344556677777776665443 2222222111110
Q ss_pred --C-CCHHHHHHHHhhc----CC----------------CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhH
Q 039695 176 --C-NDVDGARRVFDLM----GC----------------RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM 232 (605)
Q Consensus 176 --~-g~~~~A~~~~~~m----~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t 232 (605)
+ .+.+.-+.+|+-. .. .++.....-..-+...+++.+.++++....+.. ++....
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~ 280 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPC 280 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcch
Confidence 0 1111122222211 00 123333344455677899999999999988764 556666
Q ss_pred HHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHHc
Q 039695 233 LASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV---VTYTSMIVGAAKY 309 (605)
Q Consensus 233 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~ 309 (605)
+..-|.++...|+...-..+-..+++.- |....+|-++.-.|.-.|+.++|++.|.+...-|. ..|-.....|+-.
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 6666667778887776666666666553 66788999999999999999999999998775443 5899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHH
Q 039695 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 310 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (605)
|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|.++|.+.. ++-|+ +.+.+-+.-..-..+.+.+|..
T Consensus 360 ~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred chHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHH
Confidence 9999999999877663 22122223334456788899999999999775 77775 7777777777778899999999
Q ss_pred HHHhCC-----CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 389 LAKSIQ-----VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 389 ~~~~m~-----~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
+|+... ..+. .-..+|+.|..+|++.+.+++|+..+++.+.+.|.++.+|..++-+|...|+++.|...|.+.
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 998642 1111 013468899999999999999999999999999999999999999999999999999999876
Q ss_pred Hh
Q 039695 462 KR 463 (605)
Q Consensus 462 ~~ 463 (605)
..
T Consensus 516 L~ 517 (611)
T KOG1173|consen 516 LA 517 (611)
T ss_pred Hh
Confidence 54
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.4e-10 Score=107.59 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=164.3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 263 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888999999999999999998763 345677888889999999999999999988753 335567777888
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChH
Q 039695 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
.+...|++++|.+.++..............+..+...+...|++++|...+++.. ..|+ +...|..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999986432222335677778889999999999999998753 3333 2668888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+|...++++++..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999988888888888999999999999999998877653
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=1.9e-09 Score=111.01 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=76.2
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHhhChhHH--HHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCCh
Q 039695 16 SSLTRQNKRSSCHTKAHFIQQLQECKHLISL--ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV 93 (605)
Q Consensus 16 ~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 93 (605)
.+|..|+..|+.|+..||.+++..++..+++ ..++..|.-..++.+..+++.++....+.++.+.+. +|..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 5677888899999999999999999988877 447888888888888889999998888888877765 7888
Q ss_pred hhHHHHHHHHHhcCChhH
Q 039695 94 VSYTSLMAGYINMGQPQI 111 (605)
Q Consensus 94 ~~~~~li~~~~~~g~~~~ 111 (605)
.+|+.|..+|.+.|+...
T Consensus 84 Dtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hHHHHHHHHHHhccchHH
Confidence 999999999999998754
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.9e-12 Score=86.78 Aligned_cols=50 Identities=40% Similarity=0.614 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=7.7e-11 Score=121.05 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=192.6
Q ss_pred HHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 039695 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294 (605)
Q Consensus 215 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 294 (605)
.++..+...| +.||.+||.+++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 4566778888 9999999999999999999999999 9999999999999999999999999999987766 78
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 039695 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374 (605)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 374 (605)
...+|+.|..+|.++|+..- ++..++ -...+...++..|....-..++..+.-..+.-||..+ .+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HH
Confidence 88999999999999999865 222222 2223444556666655555555544323345566543 56
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 039695 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV-DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 453 (605)
..+.-.|.++.++++...+|...-.++... ++.-+...... +.-....+...+ ..++.+|..+..+-..+|+.+.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhh
Confidence 667778999999999999884332112222 35544443333 333333333333 3457899999999999999999
Q ss_pred HHHHHHHHHhCCCccCCceeEEEeCCEEeeeeccccCccchHHHHHHHHHHHHHHHHCCccCCCccc
Q 039695 454 VHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGYVGGKTGL 520 (605)
Q Consensus 454 a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 520 (605)
|..+..+|+++|++-.+.+.|..+-+ .. ...-++.+.+-|++.|+.||+.|+
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcchh
Confidence 99999999999999999999986533 11 113344678889999999997664
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.9e-08 Score=96.73 Aligned_cols=314 Identities=11% Similarity=0.024 Sum_probs=210.8
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh-hhHHHHHHHHHHcCChhHHHHH
Q 039695 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV-VSWTSIIVAHAQNAQGHEALEM 216 (605)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~ 216 (605)
.-..|..+.|...|...+.. .+ ..|.+-+....-..+.+.+..+....+..+. ..---+..+|....+.+++++-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~-~P---~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR-YP---WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc-CC---cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655555432 12 2233333333333444444444433332211 1111233455555567777777
Q ss_pred HHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHH-HHHHHHhccCC
Q 039695 217 FREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC--EFNDVVASALVDMYAKCGSVN-YSDKVFNRISN 293 (605)
Q Consensus 217 ~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~ 293 (605)
.......| ++-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++-.-..+..+. -|..+++ +.+
T Consensus 250 ~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idK 327 (559)
T KOG1155|consen 250 KERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDK 327 (559)
T ss_pred HHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hcc
Confidence 77777666 444444444444444566788888888888887631 114455655443222222222 2222222 222
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHH
Q 039695 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYT 371 (605)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 371 (605)
--+.|.-.+.+-|.-.++.++|...|++..+. .|. ...|+.+.+-|....+...|.+-++..+ .+.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHh
Confidence 23345555666778889999999999999884 444 4567777788999999999999999886 5666 588899
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 372 CVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
.|.++|.-.+...-|+-.|++.. .+|+ ++..|.+|..+|.+.++.++|++.|+.++..+..+..+|..|++.|-+.++
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999854 5554 388999999999999999999999999999988788899999999999999
Q ss_pred hhHHHHHHHHHHh
Q 039695 451 WENVHSLRSEMKR 463 (605)
Q Consensus 451 ~~~a~~~~~~m~~ 463 (605)
.++|...+++-.+
T Consensus 482 ~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 482 LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998776
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-08 Score=95.69 Aligned_cols=367 Identities=12% Similarity=0.025 Sum_probs=246.7
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHh-cC-Ch-hH-------------HHHHHHHHHhCC-
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYIN-MG-QP-QI-------------ALLLFQKMLGNL- 123 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~-~g-~~-~~-------------a~~~~~~m~~~g- 123 (605)
+...-...+.+|...++-++|.....+.+..-...-+.||.+..+ .| +- ++ |+..+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 344455667788888899999998888866433344444433332 22 11 11 122222222222
Q ss_pred --------------CCCChhhHHHHHHHHh--ccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 039695 124 --------------VWPNEFTFATVIKACS--MLADLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDGARRVF 186 (605)
Q Consensus 124 --------------~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~~ 186 (605)
+.|+..+....+.+++ ..++-..+.+.+-.+.+. -++.|+....++.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 2344444444555543 335555555555555444 36778889999999999999999999999
Q ss_pred hhcCCCChhhHHHH---HHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCC
Q 039695 187 DLMGCRNVVSWTSI---IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF 263 (605)
Q Consensus 187 ~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 263 (605)
++...-|+.+...| .-.+.+.|++++...+...+.... +-....|..-+...-...+++.|..+-+..++.. +.
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r 332 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PR 332 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cc
Confidence 98876555443332 234567888888888877775432 2223333333333345567777777777666654 33
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 039695 264 NDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL-H 339 (605)
Q Consensus 264 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~ 339 (605)
+...+-.-...+...|+.++|.-.|+.... -+..+|.-|+..|...|...+|..+-+..... ++.+..+...+. .
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 344444445667788999999999987653 46789999999999999999999887766553 344555554441 2
Q ss_pred HHh-ccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCC
Q 039695 340 ACS-HSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 340 a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
.|. ....-++|..+++.-. .+.|+ ...-+.+...+.+.|+.++++.++++ +...|| ....+.|...++..+.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D--~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD--VNLHNHLGDIMRAQNE 486 (564)
T ss_pred eeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc--cHHHHHHHHHHHHhhh
Confidence 232 2334578888888654 67888 66677888899999999999999987 445677 8888999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCc
Q 039695 417 VDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~ 436 (605)
+.+|...|..++.++|++-.
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhcCccchH
Confidence 99999999999999998754
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=3.2e-07 Score=88.66 Aligned_cols=444 Identities=11% Similarity=0.105 Sum_probs=298.1
Q ss_pred hccchHHHHHHHHHhhhCCCCCChhh----HHHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHH
Q 039695 7 RNLIFTLAASSLTRQNKRSSCHTKAH----FIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVAR 82 (605)
Q Consensus 7 ~~~~~~~a~~~l~~m~~~g~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 82 (605)
.+++...|..+|++...... ...| |+..=-.+.....++.+++..+..-...| ..|-..+.+=-..|++.-|+
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHH
Confidence 34566677777777665431 2222 22222223333444778887776543333 34445555555679999999
Q ss_pred HHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-C-
Q 039695 83 QLFDEM--LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF-G- 158 (605)
Q Consensus 83 ~~f~~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g- 158 (605)
++|++= -+|+...|++.|..=.+...++.|..+|++..- +.|+..+|.--.+.=.+.|....+.++++.+++. |
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 999864 469999999999999999999999999998876 5689888888888778889999999999888764 2
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhc----CC-CChhhHHHHHHHHHHcCCh---hHHHHH-----HHHHHHcCC
Q 039695 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLM----GC-RNVVSWTSIIVAHAQNAQG---HEALEM-----FREFNYQSR 225 (605)
Q Consensus 159 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m----~~-~~~~~~~~li~~~~~~g~~---~~A~~~-----~~~m~~~~~ 225 (605)
-..+...+++....=.++..++.|.-+|.-. +. +....|.....-=-+-|+. ++++-- |+.+...+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 1122344555555556778888888887644 33 2233344333333334443 333322 23333332
Q ss_pred CCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHh-HHHHHHHH--------HHhcCCHHHHHHHHhccCC---
Q 039695 226 DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV-VASALVDM--------YAKCGSVNYSDKVFNRISN--- 293 (605)
Q Consensus 226 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~--------y~~~g~~~~A~~~~~~~~~--- 293 (605)
+-|-.++--.+..-...|+.+...++++.++..-.+.... .+...|-. -....+++.++++|+...+
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 4566677777777777899999999999888654222211 12111111 1345788888888877654
Q ss_pred CCcchHHHHHHH----HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HH
Q 039695 294 PSVVTYTSMIVG----AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AK 368 (605)
Q Consensus 294 ~~~~~~~~li~~----~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 368 (605)
....|+.-+=-. -.++.+...|.+++...+ |.-|-..+|-..|..-.+.+.+|....+++..+ ...|. ..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~ 472 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCY 472 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhH
Confidence 334455544333 346788888888887765 577888899888888888999999999999885 45564 77
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQVDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA 446 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 446 (605)
+|......=...|+.+.|..+|+-....|. .....|.+.|.--...|.++.|..+++++++..+... +|...+..-.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 787777777788999999999987654442 2256888888888899999999999999998877654 6776665544
Q ss_pred -----hcC-----------ChhHHHHHHHHHHh
Q 039695 447 -----LAG-----------EWENVHSLRSEMKR 463 (605)
Q Consensus 447 -----~~g-----------~~~~a~~~~~~m~~ 463 (605)
+.| +...|.++|++...
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 45567777776643
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=1.7e-08 Score=95.66 Aligned_cols=294 Identities=11% Similarity=0.052 Sum_probs=187.4
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039695 98 SLMAGYIN--MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175 (605)
Q Consensus 98 ~li~~~~~--~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 175 (605)
.+..+..+ .|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444443 589999999988877766443 234555666777889999999999888887446777788888888888
Q ss_pred CCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHH
Q 039695 176 CNDVDGARRVFDLMG---CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252 (605)
Q Consensus 176 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 252 (605)
.|+.+.|..-.++.. .+++........+|.+.|++.+...++..|.+.+ .--|+.. .+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~l~~~e~-----------------~~- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-LLSDEEA-----------------AR- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-CCChHHH-----------------HH-
Confidence 999988888776654 3677788888899999999999999999998887 4333221 00
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 039695 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329 (605)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 329 (605)
....+++.+++-....+..+.-...++..+ +.++..--+++.-+.+.|+.++|.++..+-.+.+..|
T Consensus 227 ----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 227 ----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred ----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 011233333333333333333333444444 2344455556666667777777777777777665655
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHH
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLL 408 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll 408 (605)
. ...+-.+.+.++.+.-.+..+.-.+.++-.| ..+.+|...|.+.+.|.+|.+.|+. ++..|+ ...|+-+.
T Consensus 297 ~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la 368 (400)
T COG3071 297 R----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPS--ASDYAELA 368 (400)
T ss_pred h----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHH
Confidence 5 2222345555666555555555544444444 4556666666666667666666665 345555 66666666
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 039695 409 SASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~ 429 (605)
.++.+.|+.++|.+..++.+.
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666553
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.9e-08 Score=92.49 Aligned_cols=215 Identities=9% Similarity=0.053 Sum_probs=137.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-CCh------hhHHHHHHHHHHcCChhHH
Q 039695 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNV------VSWTSIIVAHAQNAQGHEA 213 (605)
Q Consensus 141 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~~~g~~~~A 213 (605)
..+.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||. ...-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467889999999998853 44566777899999999999999999988765 443 2344566778889999999
Q ss_pred HHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHh
Q 039695 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFND----VVASALVDMYAKCGSVNYSDKVFN 289 (605)
Q Consensus 214 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~ 289 (605)
..+|..+.+.+ .--......++..|-...+|++|...-..+.+.+-.+.. ..|.-|...+....+.+.|..++.
T Consensus 127 E~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999988765 233445667777777788888888877777776533321 123334444444555666666666
Q ss_pred ccCCCCc--c-hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 039695 290 RISNPSV--V-TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358 (605)
Q Consensus 290 ~~~~~~~--~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 358 (605)
+..+.|. + .--.+...+...|++.+|.+.++...+.+..--..+...|..+|.+.|+.+++..++..+.
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5543222 1 1222334455566666666666665554333333444555555566666666655555553
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=7.1e-09 Score=105.18 Aligned_cols=232 Identities=16% Similarity=0.161 Sum_probs=160.7
Q ss_pred hHHHhHHHhhcccCchhhHHHHHHHHHHh-----CC-CCcHh-HHHHHHHHHHhcCCHHHHHHHHhccCC----------
Q 039695 231 HMLASVINACASLGRLVSGKVAHGVVVRS-----GC-EFNDV-VASALVDMYAKCGSVNYSDKVFNRISN---------- 293 (605)
Q Consensus 231 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~---------- 293 (605)
.|...+...|...|+++.|..++...++. |. .|.+. ..+.+..+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666665553 21 12222 223456677777777777777776642
Q ss_pred C-CcchHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCC-CH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--C
Q 039695 294 P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-----RGIKP-ND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYG--I 363 (605)
Q Consensus 294 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-d~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 363 (605)
| -..+++.|...|.+.|++++|..++++..+ .|..+ .. .-++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 124566667778888888877777766543 12222 22 2456677778899999999999887765443 2
Q ss_pred CCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CC-CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh--
Q 039695 364 IPD----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-------VD-PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE-- 429 (605)
Q Consensus 364 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~-p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 429 (605)
.++ ..+|+.|...|-..|++++|.+++++.. .+ .......++.|..+|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 5789999999999999999999998753 11 111134678899999999999999999988764
Q ss_pred --cCCCC---CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 430 --SNQQV---ANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 430 --~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
.+|+. ..+|..|+..|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4588899999999999999999998875
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=1.9e-07 Score=95.55 Aligned_cols=400 Identities=15% Similarity=0.096 Sum_probs=255.7
Q ss_pred HhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-
Q 039695 55 KSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT- 130 (605)
Q Consensus 55 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t- 130 (605)
...+.-|+.+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-......|+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344567889999999999999999999999998743 3556799999999999999999999987765443454443
Q ss_pred HHHHHHHHh-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhC-----------CCHHHHHHHHhhcCC---
Q 039695 131 FATVIKACS-MLADLITGKQIHTHIETF--GF--QYNLVVCSSLVDMYGKC-----------NDVDGARRVFDLMGC--- 191 (605)
Q Consensus 131 ~~~ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~-----------g~~~~A~~~~~~m~~--- 191 (605)
+-..-+.|. +.+..+++..+-.++++. +. ...+..|..+.-+|... ....++.+.+++..+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334443 457777887777777662 11 22334455555555432 113455666666533
Q ss_pred --CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh-CCCCcHhHH
Q 039695 192 --RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVA 268 (605)
Q Consensus 192 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~ 268 (605)
|++.-| +.--|+..++.+.|++..++....+ -.-+...+-.+.-.+...+++.+|..+.+..... |. |-...
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~ 550 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM 550 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence 333333 3334666778888888888887764 4556666666666667778888888877766542 21 00000
Q ss_pred HHHHHHHHhcCCHHHHH--------------------------HHHhccC----C-CC-cchHHHHHHHHHHcCChhHHH
Q 039695 269 SALVDMYAKCGSVNYSD--------------------------KVFNRIS----N-PS-VVTYTSMIVGAAKYGLGRFSL 316 (605)
Q Consensus 269 ~~li~~y~~~g~~~~A~--------------------------~~~~~~~----~-~~-~~~~~~li~~~~~~g~~~~A~ 316 (605)
..-+..-..-++.++|. +.+..+. + .+ +.++..+.. .++ -+...+.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~ 628 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAG 628 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcc
Confidence 00011111122222222 2222221 0 11 112222211 111 0000000
Q ss_pred HHHHHHHHcCCCC--C------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHH
Q 039695 317 DLFNEMISRGIKP--N------DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 317 ~l~~~m~~~g~~p--d------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 387 (605)
.-. .|...-+.| + ...|......+...+..++|...+.+.. ++.|- ...|......+...|.++||.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 011111222 2 1234556677888899999988887763 55665 777777788889999999999
Q ss_pred HHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 388 KLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVE--ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 388 ~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+.|.. ....|+ .+.+..++...+.+.|+...|.. ++..+++.+|.++.+|..|+.++-+.|+.++|.+.|....+.
T Consensus 705 ~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 705 EAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99876 445666 36789999999999999998888 999999999999999999999999999999999999988765
Q ss_pred CC
Q 039695 465 GI 466 (605)
Q Consensus 465 ~~ 466 (605)
..
T Consensus 784 e~ 785 (799)
T KOG4162|consen 784 EE 785 (799)
T ss_pred cc
Confidence 43
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=5.1e-09 Score=111.28 Aligned_cols=263 Identities=15% Similarity=0.083 Sum_probs=186.4
Q ss_pred CChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCC-hhHHHhHHHhhc---------ccCchhhHHHHHHHH
Q 039695 192 RNVVSWTSIIVAHAQ-----NAQGHEALEMFREFNYQSRDRPN-QHMLASVINACA---------SLGRLVSGKVAHGVV 256 (605)
Q Consensus 192 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~---------~~~~~~~a~~~~~~~ 256 (605)
.+...|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++. ..+++++|...+..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 345556666665322 23467999999998874 354 344444433332 234578899999998
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-H
Q 039695 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PS-VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND-V 332 (605)
Q Consensus 257 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ 332 (605)
++.. +.+...+..+...+...|++++|...|++..+ |+ ...|..+...+...|++++|+..+++..+. .|+. .
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~ 407 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAA 407 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChh
Confidence 8876 55778888889999999999999999999764 43 457888889999999999999999999885 4443 2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~ 411 (605)
.+..++..+...|++++|...++++... ..|+ ...+..+...|...|++++|...++++...+......++.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 2333444566689999999999987543 2353 556777888999999999999999886533332355666777777
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...| +.|...++++++..-..+..+..+...|+-.|+-+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4788878777764322222222366778888888888877 7776654
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=3.3e-08 Score=93.73 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=170.2
Q ss_pred CCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHH
Q 039695 176 CNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252 (605)
Q Consensus 176 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 252 (605)
.|++..|+++..+-.+ ..+..|..-+.+-.+.|+.+.+-.++.+.-+.. -.++.....+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3555555555544332 122333333344444555555555555554331 123333333344444455555555555
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc-----------chHHHHHHHHHHcCChhHHHHHHHH
Q 039695 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV-----------VTYTSMIVGAAKYGLGRFSLDLFNE 321 (605)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~ 321 (605)
...+.+.+ +.++.+.......|.+.|++.....+...+.+... .+|+.++.-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555544 33455555556666666666666666665554222 3566666655555555555556666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCch
Q 039695 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGG 400 (605)
Q Consensus 322 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~ 400 (605)
...+ .+-++..-.+++.-+...|+.++|.++..+..++ +..|+...+ -...+-++.+.-++..+. +...|+ +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 5543 4555666677777788899999999998888554 666662221 122344554444444433 222233 2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
+..+.+|...|.+++.+.+|...|+.+++..|+ ...|..++.+|.+.|+.++|.+++++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 678999999999999999999999999999886 46899999999999999999999988764
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.8e-07 Score=89.50 Aligned_cols=400 Identities=13% Similarity=0.043 Sum_probs=246.2
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHh-hChhHHHHHHHHHHHh-CCCCch-HHHHHHHHHHHcCCChhH
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQEC-KHLISLASVHSEILKS-GFLSNT-FTLNHLINCYVRLKKTQV 80 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~-g~~~~~-~~~~~li~~~~~~g~~~~ 80 (605)
.+.++|.+++|++.+.+... ..||..+|-+-..+| ...++++++.+.-.+. .+.|+- -.+..-..++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 46789999999999999886 477755555544444 5667776666554432 344442 244444566667788877
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH--------HHHh-CC--CCCChhhHHHHHHHHhccCChHHHHH
Q 039695 81 ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQ--------KMLG-NL--VWPNEFTFATVIKACSMLADLITGKQ 149 (605)
Q Consensus 81 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~-~g--~~pd~~t~~~ll~a~~~~~~~~~a~~ 149 (605)
|+.= +|-.+++.+|..+.-.--+.++++ +-.+ .+ +.|......+.+..+-.. +.
T Consensus 202 al~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~---- 266 (606)
T KOG0547|consen 202 ALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK---- 266 (606)
T ss_pred HHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc----
Confidence 7532 223334444433322222222222 2222 11 334443333333332110 00
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhC-CCHHHHHHHHhhc-------CCC---C------hhhHHHHHHHHHHcCChhH
Q 039695 150 IHTHIETFGFQYNLVVCSSLVDMYGKC-NDVDGARRVFDLM-------GCR---N------VVSWTSIIVAHAQNAQGHE 212 (605)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~~~~m-------~~~---~------~~~~~~li~~~~~~g~~~~ 212 (605)
..+...+-..|...-..+=..|... ..+..|...+.+- ... | ..+...-..-+.-.|++..
T Consensus 267 --~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 267 --PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred --ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0000000011111111121122111 1122232222211 111 1 1111111222445788999
Q ss_pred HHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 039695 213 ALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292 (605)
Q Consensus 213 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 292 (605)
|.+.|+..+... -. +...|.-+..+|....+.++..+.|....+.+ +.++.+|..-..++.-.+++++|..=|++..
T Consensus 345 a~~d~~~~I~l~-~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 345 AQEDFDAAIKLD-PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhHHHHHhcC-cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988765 22 22237777788899999999999999998876 5567788888888888999999999999987
Q ss_pred CC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---
Q 039695 293 NP---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--- 366 (605)
Q Consensus 293 ~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--- 366 (605)
.- ++..|-.+-.+..+.+.+++++..|++.+++ ++--+..|+.....+...++++.|.+.|+..+ .+.|+
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~ 497 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHL 497 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhcccccc
Confidence 63 4556666767777889999999999999886 55567788888899999999999999999885 34444
Q ss_pred ------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039695 367 ------AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431 (605)
Q Consensus 367 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 431 (605)
+.+.-.++..- -.+++..|.+++++.. ..|. ....|.+|...-.+.|+.++|+++|++...+-
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222222222 3489999999998854 4443 35689999999999999999999999988764
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.8e-06 Score=85.95 Aligned_cols=433 Identities=12% Similarity=0.071 Sum_probs=255.9
Q ss_pred hhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHH--HHHHHH--cCCChhH
Q 039695 5 LTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNH--LINCYV--RLKKTQV 80 (605)
Q Consensus 5 l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--li~~~~--~~g~~~~ 80 (605)
..+++++++|++....+...+ .-|.+.+..-+-+..+.......+..+...+.. .+++. +=.+|| +.+..++
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHH
Confidence 456889999999999988765 334455555555666666666556555444421 12222 234454 7789999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 039695 81 ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETFGF 159 (605)
Q Consensus 81 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 159 (605)
|...++....-+...-..-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-.. ..+. .+.....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~ 169 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVPE 169 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhccC
Confidence 9999996655555566666677788999999999999998875431 11112222221111 1111 1222222
Q ss_pred CC--chhHHHHHHHHHHhCCCHHHHHHHHhhc--------CCCC-----hh-----hHHHHHHHHHHcCChhHHHHHHHH
Q 039695 160 QY--NLVVCSSLVDMYGKCNDVDGARRVFDLM--------GCRN-----VV-----SWTSIIVAHAQNAQGHEALEMFRE 219 (605)
Q Consensus 160 ~~--~~~~~~~Li~~y~~~g~~~~A~~~~~~m--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~ 219 (605)
.| +-..+-.....++..|++.+|+++++.. .+.| .. .---|.-.+...|+-.+|.++|..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 22 1122222445677899999999999876 1111 11 111244556778999999999999
Q ss_pred HHHcCCCCCChhHHHhHHH---hhcccCchhh--HHHHHHH-----------HHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 039695 220 FNYQSRDRPNQHMLASVIN---ACASLGRLVS--GKVAHGV-----------VVRSGCEFNDVVASALVDMYAKCGSVNY 283 (605)
Q Consensus 220 m~~~~~~~p~~~t~~~ll~---a~~~~~~~~~--a~~~~~~-----------~~~~g~~~~~~~~~~li~~y~~~g~~~~ 283 (605)
.+... .+|........+ +...-..+-. ....++. +....-......-+.|+.+|. +..+.
T Consensus 250 ~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 250 IIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 98875 566644333322 2222222211 1111111 111111122334455666664 45567
Q ss_pred HHHHHhccCCCC-cchHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH-----
Q 039695 284 SDKVFNRISNPS-VVTYTSMIVGAA--KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLD----- 355 (605)
Q Consensus 284 A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~----- 355 (605)
++++-...+... ...+.+++.... +...+.+|.+++...-+....-........+.-....|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 777777776432 334444444332 223467788887777664222223444455556677899999999998
Q ss_pred ---HHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh--------CCCCCCchhhHHHHHHHHHHHcCChHHHHHHH
Q 039695 356 ---SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS--------IQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424 (605)
Q Consensus 356 ---~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~ 424 (605)
.+ .+.+..|. +-.+++.++.+.+.-+.|..++.+ +...+. -..+|.-+...-.++|+.++|...+
T Consensus 406 ~~ss~-~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~-l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 406 WKSSI-LEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA-LLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhh-hhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH-HHhHHHHHhHHHHhcCchHHHHHHH
Confidence 44 33344444 445678888888776655555443 222222 1234555555566789999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 039695 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLR 458 (605)
Q Consensus 425 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 458 (605)
+++.+.+|++..+...++.+|++. +.+.|..+-
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 999999999999999999999886 455555543
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=2e-08 Score=94.43 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039695 93 VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172 (605)
Q Consensus 93 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 172 (605)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455566666666666666666666665532 1134455555666666666776766666666554 3344555566666
Q ss_pred HHhCCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchh
Q 039695 173 YGKCNDVDGARRVFDLMGC-----RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLV 247 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~ 247 (605)
|...|++++|.+.|++... .....|..+...+...|++++|...|.+..... +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 6666666666666666532 122345555566666666666666666665432 222334444444455555555
Q ss_pred hHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 039695 248 SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288 (605)
Q Consensus 248 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 288 (605)
+|...+....+. .+.+...+..+...+.+.|+.++|..+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555544443 1223333333444444444444444433
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=8.7e-09 Score=109.53 Aligned_cols=213 Identities=13% Similarity=0.036 Sum_probs=162.7
Q ss_pred CchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHH---------hcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCC
Q 039695 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA---------KCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGL 311 (605)
Q Consensus 244 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 311 (605)
+.+++|...+...++.. +.+...+..+...|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678889999888764 334556666665554 23457899999998875 355678888888999999
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHH
Q 039695 312 GRFSLDLFNEMISRGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKL 389 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 389 (605)
+++|...|++..+. .|+ ...+..+..++...|++++|...++... .+.|+ ...+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 444 5667778888999999999999999886 45665 23333445557778999999999
Q ss_pred HHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 390 AKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 390 ~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+++.. ..|+..+..+..+..++...|+.++|...++++....|.+......+...|...| +.|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98753 2222235667888888999999999999999988888887777888888888888 4788877777653
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=8.1e-09 Score=94.80 Aligned_cols=231 Identities=12% Similarity=0.091 Sum_probs=161.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 039695 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277 (605)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 277 (605)
+-|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+++.|..++.+-++.- +-|+.........+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 45667777778888887777776653 4566667777777777777777777766665542 4444444455566666
Q ss_pred cCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 039695 278 CGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 354 (605)
.++.++|.++++...+ .|+.+...+..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-.+++|.++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6777777777776654 34455555666677777777777777777777766 5566666666776667766666655
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 355 DSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 355 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
...... + ..|+....+|-.|.......||+..|.+.|+-.+..+|++
T Consensus 382 ~RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 544211 1 1233335577777777778899999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 435 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..+++.|+-.-.+.|+.++|..+++...+...
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999999988776544
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=1.2e-05 Score=80.94 Aligned_cols=439 Identities=12% Similarity=0.091 Sum_probs=239.8
Q ss_pred CCCChhhHHHHHHHhhChhHH---HHHHHHHHHhCCC------------CchHHHHHHHHHHHcCCChhHHHHHHhcCCC
Q 039695 26 SCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFL------------SNTFTLNHLINCYVRLKKTQVARQLFDEMLE 90 (605)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~------------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 90 (605)
+..+..||...|++......- .-....+.+.|++ .++..-+-.|..+++.+++++|.+.+..+..
T Consensus 118 iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 118 ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 445667777777766443321 2222222333332 2344455667778888999998888887743
Q ss_pred ----------CChhhHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHH
Q 039695 91 ----------PNVVSYTSLMAGYINMGQPQI---ALLLFQKMLGNLVWPNE--FTFATVIKACSMLADLITGKQIHTHIE 155 (605)
Q Consensus 91 ----------~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~ 155 (605)
.+-..|+-+-...+++.+.-. .-.+++.+.. .-+|. ..|.+|.+-|.+.|.++.|..++++.+
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 233456666666666544332 2333444333 23443 357777888888888888888887776
Q ss_pred HhCCCCchhHHHHHHHHHHhC----------------C------CHHHHHHHHhhcCC---------------CChhhHH
Q 039695 156 TFGFQYNLVVCSSLVDMYGKC----------------N------DVDGARRVFDLMGC---------------RNVVSWT 198 (605)
Q Consensus 156 ~~g~~~~~~~~~~Li~~y~~~----------------g------~~~~A~~~~~~m~~---------------~~~~~~~ 198 (605)
..- ..+.-++.+.+.|+.- | +++-...-|+.+.. .++..|.
T Consensus 276 ~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~ 353 (835)
T KOG2047|consen 276 QTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH 353 (835)
T ss_pred Hhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence 642 2333344444444321 1 12223333333322 1223333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCh------hHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCc---HhHHH
Q 039695 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ------HMLASVINACASLGRLVSGKVAHGVVVRSGCEFN---DVVAS 269 (605)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~ 269 (605)
.-+. ...|++.+-...|.+.... +.|-. ..+..+.+-|-..|+++.|+.+|+...+...+.- ..+|.
T Consensus 354 kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 354 KRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred hhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 2222 2345566666666666543 33321 2455666667777777777777777776543322 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-C--------------------CcchHHHHHHHHHHcCC-----------------
Q 039695 270 ALVDMYAKCGSVNYSDKVFNRISN-P--------------------SVVTYTSMIVGAAKYGL----------------- 311 (605)
Q Consensus 270 ~li~~y~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~g~----------------- 311 (605)
.-.++-.+..+++.|.++.++... | +...|...+.---..|-
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 555666666667777766665431 1 11123333322222333
Q ss_pred -----------------hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---ccCcHHHHHHHHHHHHHhcCCCCcH--H
Q 039695 312 -----------------GRFSLDLFNEMISRGIKPNDV-TFVGVLHACS---HSGLVDEGIQHLDSMYRKYGIIPDA--K 368 (605)
Q Consensus 312 -----------------~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~--~ 368 (605)
++++.+.|++=+..=..|+.. .|+..|.-+. ....++.|..+|++.++ +.+|.. .
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKt 587 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKT 587 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHH
Confidence 334444443322221123332 3333333332 23468899999998864 555542 1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc--hHHHHHHH
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ--VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN--AYVTLSNT 444 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~ 444 (605)
.|-.....=-+.|....|++++++.. .++......||..|.-....=-+.....+|+++++.-|+... ...-.+++
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl 667 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL 667 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 22222222234688888999998864 333323457888776655554566778899999998776543 33345677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 039695 445 YALAGEWENVHSLRSEMKRTGIHKEPGCSW 474 (605)
Q Consensus 445 y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 474 (605)
-.+.|..+.|..++.--.+---+...+-.|
T Consensus 668 EtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 668 ETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred hhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 788999999999987665543333333344
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-07 Score=91.61 Aligned_cols=278 Identities=8% Similarity=0.004 Sum_probs=208.9
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHh
Q 039695 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCR---NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235 (605)
Q Consensus 159 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 235 (605)
+..++.+.-...+-+..++++.+..++++..-+. ....+..-|.++...|+..+-..+=.++.+.- +-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 3456666667777788899999999999988764 44456667888999999988888888887753 556788988
Q ss_pred HHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCCh
Q 039695 236 VINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLG 312 (605)
Q Consensus 236 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 312 (605)
+.--|...|...+|++.+....... +.-...|-.+...|+-.|.-+.|...+....+ ..-..+--+..-|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999998876543 22345777888889988988888877665442 1111122234457788999
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC-C---CC-cHHHHHHHHHHHhhcCCHHHH
Q 039695 313 RFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG-I---IP-DAKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 313 ~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~---~p-~~~~~~~li~~~~~~g~~~~A 386 (605)
+-|.++|.+... +-| |+...+-+.-..-..+.+.+|..+|+..+..-. + .+ ...+++.|..+|.+++++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998876 444 556666665555667899999999987752110 1 11 345688899999999999999
Q ss_pred HHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 039695 387 YKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 387 ~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
+..+++.. ..|. +..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999843 3332 3889999999999999999999999999999999865544443
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.04 E-value=1.9e-05 Score=79.55 Aligned_cols=395 Identities=11% Similarity=0.033 Sum_probs=236.3
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHH
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL------VWPNEFTFATV 134 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~pd~~t~~~l 134 (605)
...+|...+......|-++.+.+++++..+-++..-+--|..++..+++++|.+.+...+... .+-+...|.-+
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 344666667777777777788888887777666667777788888888888877777665431 12233344444
Q ss_pred HHHHhccCChHHHH---HHHHHHHHhCCCCc--hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHc
Q 039695 135 IKACSMLADLITGK---QIHTHIETFGFQYN--LVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQN 207 (605)
Q Consensus 135 l~a~~~~~~~~~a~---~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 207 (605)
-...++..+.-... .+++..+.. -+| ...|++|.+-|.+.|.++.|..+|++... -.+.-++.+-.+|++-
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 44444333322222 222222221 122 35789999999999999999999987543 2222333333333321
Q ss_pred ----------------CC------hhHHHHHHHHHHHcCCC----------CCChhHHHhHHHhhcccCchhhHHHHHHH
Q 039695 208 ----------------AQ------GHEALEMFREFNYQSRD----------RPNQHMLASVINACASLGRLVSGKVAHGV 255 (605)
Q Consensus 208 ----------------g~------~~~A~~~~~~m~~~~~~----------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 255 (605)
|+ .+-.+.-|+.+....+. +-+..++..-.. ...|+..+-...+.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHH
Confidence 11 22233333333322211 111222222221 223445555566666
Q ss_pred HHHhC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc-------hHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 256 VVRSG-----CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVV-------TYTSMIVGAAKYGLGRFSLDLFNEMI 323 (605)
Q Consensus 256 ~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~ 323 (605)
+++.= ...-...|..+.+.|-..|+++.|+.+|++..+-+-. +|-.-...=.++.+++.|+.+.+...
T Consensus 373 Av~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 373 AVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 66531 1112347888999999999999999999998874433 34444444556788999999887765
Q ss_pred Hc----------C-CCC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHH
Q 039695 324 SR----------G-IKP------NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDE 385 (605)
Q Consensus 324 ~~----------g-~~p------d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 385 (605)
.. | .++ +...|...++.--..|-++....+++.+..-.-..|. +..| ...+-....+++
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny---AmfLEeh~yfee 529 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY---AMFLEEHKYFEE 529 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhHHHHH
Confidence 32 1 111 1123444455445567888888899988644333454 2233 333556778999
Q ss_pred HHHHHHhC-C-CCCCchhhHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHhcCChhHHHHHH
Q 039695 386 AYKLAKSI-Q-VDPDGGPLLWGTLLSASRL---HGRVDIAVEASNQLIESNQQVAN--AYVTLSNTYALAGEWENVHSLR 458 (605)
Q Consensus 386 A~~~~~~m-~-~~p~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~y~~~g~~~~a~~~~ 458 (605)
+.+++++- + ++++.....|++.+.-+.+ ....+.|..+|+++++.-|+... .|...+..-.+-|.-..|..++
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999983 3 4554345589988776643 23689999999999997775433 3334444445567788888888
Q ss_pred HHHH
Q 039695 459 SEMK 462 (605)
Q Consensus 459 ~~m~ 462 (605)
++..
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 8753
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=3.5e-08 Score=96.00 Aligned_cols=213 Identities=12% Similarity=0.096 Sum_probs=132.9
Q ss_pred chhhHHHHHHHHHHhC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHH
Q 039695 245 RLVSGKVAHGVVVRSG-CEF--NDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 245 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444555555555322 122 234566667777888888888888877653 3456788888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 039695 319 FNEMISRGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397 (605)
Q Consensus 319 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 397 (605)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+++.....
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888876 3443 45667777777788888888888887753 35543222222223445677888888885532111
Q ss_pred CchhhHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLI-------ESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 398 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+ +..|.. .......|+...+ +.++.+. ++.|..+.+|..++..|.+.|++++|...|++..+.++
T Consensus 196 ~--~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 D--KEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C--ccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 122321 2222335555443 2444443 34455667888888888888888888888888876554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=4.1e-08 Score=86.28 Aligned_cols=163 Identities=16% Similarity=0.136 Sum_probs=142.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDM 376 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 376 (605)
...|.-+|.+.|+...|.+-+++.++. .| +..++..+...|...|..+.|.+.|+..+ .+.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 445667899999999999999999885 34 45688888899999999999999999886 66776 7788888999
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 039695 377 LGRTGRLDEAYKLAKSIQVDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV 454 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 454 (605)
+|..|++++|...|++....|. ....+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998654543 12568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 039695 455 HSLRSEMKRTGI 466 (605)
Q Consensus 455 ~~~~~~m~~~~~ 466 (605)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999988776
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=1.4e-06 Score=88.72 Aligned_cols=237 Identities=12% Similarity=0.144 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC----------CChh-hHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCCC
Q 039695 164 VVCSSLVDMYGKCNDVDGARRVFDLMGC----------RNVV-SWTSIIVAHAQNAQGHEALEMFREFNYQ-----SRDR 227 (605)
Q Consensus 164 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~ 227 (605)
.+..-|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... |...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4455567777777777777777765432 2222 2234566778888888888888887532 1111
Q ss_pred CC-hhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcc-hHHHH
Q 039695 228 PN-QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVV-TYTSM 302 (605)
Q Consensus 228 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~-~~~~l 302 (605)
|. ..|+..+..+|.+.|++++|...++.+.+ +++... .+.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHH
Confidence 11 12233333344444444444444433322 111100 01111 23445
Q ss_pred HHHHHHcCChhHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhc----C-CCCc-HHH
Q 039695 303 IVGAAKYGLGRFSLDLFNEMIS---RGIKPND----VTFVGVLHACSHSGLVDEGIQHLDSMYRKY----G-IIPD-AKH 369 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~---~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~ 369 (605)
...+...+++++|..++++..+ .-+.++. .+++.|...+...|++++|.++|++.+... + ..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 5556666777777777665443 1123333 467788888888888888888888776543 1 1222 556
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ--------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
++.|...|.+.++.++|.++|.+.. ..|+ ...+|..|...|...|+++.|+++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~-~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD-VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7778888888888888888876532 2233 345899999999999999999999988873
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.9e-08 Score=92.35 Aligned_cols=197 Identities=12% Similarity=0.131 Sum_probs=161.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Q 039695 264 NDVVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV-GVLHA 340 (605)
Q Consensus 264 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a 340 (605)
|-.--+-+...|.+.|.+.+|++.|+.-. .|-+.||-.|-..|.+..++..|+.+|.+-.+ ..|-.+||. ...+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 33344567888999999999999998776 37888999999999999999999999998887 456666654 56667
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCchhhHHHHHHHHHHHcCCh
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQV--DPDGGPLLWGTLLSASRLHGRV 417 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~~~ll~~~~~~g~~ 417 (605)
+...++.++|.++++...+ ..| +++...|+...|.-.++++-|+.+++++.. ..+ +..|+.+.-+|.-.+++
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcch
Confidence 7788999999999998864 344 478888888999999999999999987531 224 78999999999999999
Q ss_pred HHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 418 DIAVEASNQLIESN--QQ-VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 418 ~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
+.++..|++++... |+ -..+|..|+......|++.-|.+.|+.....+..
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 99999999998753 32 2458999999999999999999999988765543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=5.5e-07 Score=87.66 Aligned_cols=220 Identities=12% Similarity=0.017 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCC--hhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 039695 209 QGHEALEMFREFNYQSRDRPN--QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286 (605)
Q Consensus 209 ~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 286 (605)
..+.++.-+.++.......|+ ...|......+...|+.++|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344445555554433212222 1234444445555666666666666665544 4456777778888888888888888
Q ss_pred HHhccCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 039695 287 VFNRISN--P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363 (605)
Q Consensus 287 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 363 (605)
.|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8887754 3 3467777788888889999999999888874 44433222222223456788999988876532 22
Q ss_pred CCcHHHHHHHHHHHhhcCCHHH--HHHHHHh-CCCCCC---chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 364 IPDAKHYTCVVDMLGRTGRLDE--AYKLAKS-IQVDPD---GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~-m~~~p~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.|+...+ .++..+ .|++.+ +.+.+.+ ....+. .....|..+...+...|++++|+..|+++++.+|.+..
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3332222 233333 344433 3333322 111111 11457999999999999999999999999999976543
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=4.4e-08 Score=97.07 Aligned_cols=221 Identities=15% Similarity=0.109 Sum_probs=176.7
Q ss_pred hcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHHcCChhHHH
Q 039695 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP---SVVTYTSMIVGAAKYGLGRFSL 316 (605)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 316 (605)
+.+.|++.+|.-.|+..++.. |.+...|.-|.......++-..|+..+.+..+- |....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346788888888888888876 667888999999999999989999999888763 4456666777899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 039695 317 DLFNEMISRGIK--------PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 317 ~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 388 (605)
+.++.-+....+ ++..+-.. ..+.....+....++|-++....+..+|+.++.+|.-.|--.|.++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988654211 01000000 12233334556667777776776767889999999999999999999999
Q ss_pred HHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 389 LAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 389 ~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
-|+.. ..+|+ +..+||-|...++...+.++|+.+|.+++++.|.-..+...|+-.|...|.+++|.+.|-.....
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99984 56675 47899999999999999999999999999999999999999999999999999999998877653
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=4.2e-05 Score=78.94 Aligned_cols=402 Identities=14% Similarity=0.044 Sum_probs=243.9
Q ss_pred CCCChhhH---HHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCC----CChhhHHH
Q 039695 26 SCHTKAHF---IQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE----PNVVSYTS 98 (605)
Q Consensus 26 ~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~ 98 (605)
.+.+...| ...+..|++...+.+.++.....- -.....|+.+-..|+.+|.-..|..+.+.-.. |+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44444443 444555555555555555554432 33567888888999999999999999987632 33333222
Q ss_pred HH-HHHH-hcCChhHHHHHHHHHHhC--CCC--CChhhHHHHHHHHhcc-----------CChHHHHHHHHHHHHhCCCC
Q 039695 99 LM-AGYI-NMGQPQIALLLFQKMLGN--LVW--PNEFTFATVIKACSML-----------ADLITGKQIHTHIETFGFQY 161 (605)
Q Consensus 99 li-~~~~-~~g~~~~a~~~~~~m~~~--g~~--pd~~t~~~ll~a~~~~-----------~~~~~a~~~~~~~~~~g~~~ 161 (605)
++ ..|. +-+..++++++-.+.... +.. .....|-.+--+|... ....++.+.++++++.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 22 3333 346777887777766552 111 1223333333333221 12346777888888776 33
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH
Q 039695 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMG----CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237 (605)
Q Consensus 162 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 237 (605)
|+.+.--|.--|+..++++.|.+...+.. .-+...|.-+.-.+...+++.+|+.+.+.....- .-|-.....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 44443344456788899999988877653 3678899999999999999999999998766532 11111111111
Q ss_pred HhhcccCchhhHHHHHHHHHH---------------------hCC-------CCcHhHHHHHHHHHH---hcCCHHHHHH
Q 039695 238 NACASLGRLVSGKVAHGVVVR---------------------SGC-------EFNDVVASALVDMYA---KCGSVNYSDK 286 (605)
Q Consensus 238 ~a~~~~~~~~~a~~~~~~~~~---------------------~g~-------~~~~~~~~~li~~y~---~~g~~~~A~~ 286 (605)
+.-...++.+++......+.. .|+ ...+.++..+..... +.-..+....
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111112333332222211111 111 011222222222211 1111111112
Q ss_pred HHhccCCCCc------chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 039695 287 VFNRISNPSV------VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 287 ~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 360 (605)
.+...+.|+. ..|......+.+.++.++|...+.+.... .+-....|......+...|..++|.+.|....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-- 711 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL-- 711 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH--
Confidence 2222222332 24556667788899999999888887764 23344555555566777899999999988664
Q ss_pred cCCCCc-HHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 361 YGIIPD-AKHYTCVVDMLGRTGRLDEAYK--LAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 361 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
-+.|+ +...+++..++.+.|+..-|.. ++..+ ...|+ +...|-.|...+.+.|+.+.|.+.|..+.++++.+|.
T Consensus 712 -~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 712 -ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred -hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 67887 7888999999999998777776 77664 45554 4889999999999999999999999999999877664
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=6.3e-05 Score=76.17 Aligned_cols=382 Identities=12% Similarity=0.014 Sum_probs=215.4
Q ss_pred HcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHH
Q 039695 73 VRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN-EFTFATVIKACSMLADLITGK 148 (605)
Q Consensus 73 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~ 148 (605)
...|+-++|......-.. .+.+.|..+--.+-...++++|++.|...... .|| ...+.-+--.-+..++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 345777777777765543 35566777777776777788888888877764 343 334443333344556666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CChhhHHHH------HHHHHHcCChhHHHHHH
Q 039695 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-----RNVVSWTSI------IVAHAQNAQGHEALEMF 217 (605)
Q Consensus 149 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~ 217 (605)
..-..+.+.. +.....|..+.-++.-.|+...|..+.++... ++...+.-. .....+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6555555432 33445566677777777777777777665432 333333222 23345667777777766
Q ss_pred HHHHHcCCCCCChhHH-HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHhccCC--
Q 039695 218 REFNYQSRDRPNQHML-ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD-KVFNRISN-- 293 (605)
Q Consensus 218 ~~m~~~~~~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~-- 293 (605)
..-... ..|...+ ..-...+.+.+++++|..++..++... |.+...|-.+..++++--+.-++. .+|....+
T Consensus 209 ~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 654321 1222222 233344566777777777777777664 334444444555554333333333 55554432
Q ss_pred CCcchHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHHHHhcC------
Q 039695 294 PSVVTYTSMIVGAAK-YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE----GIQHLDSMYRKYG------ 362 (605)
Q Consensus 294 ~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~------ 362 (605)
|-...-.-+--.... ..-.+..-+++..+.+.|+++--..+.++ +-.....+- +..+...+ ...|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSL-SGTGMFNFLD 360 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhc-ccccCCCccc
Confidence 000000000000111 11233344566677777877533333332 222111111 11111111 1111
Q ss_pred ----CCCcH--HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 363 ----IIPDA--KHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 363 ----~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
-+|+. -++-.++..+-+.|+++.|...++... -.|+ -+..|..-...+...|++++|...++++.+++-.|.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 13453 345567888899999999999998754 3343 233565666778889999999999999999986654
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..-.--+.-..++.+.++|.++.....+.|.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3322344555688999999999998887774
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=1.2e-06 Score=90.22 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=156.4
Q ss_pred HHHHhCCCHHHHHHHHhhcCC--CChhhHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc-cc---
Q 039695 171 DMYGKCNDVDGARRVFDLMGC--RNVVSWT-SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA-SL--- 243 (605)
Q Consensus 171 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~-~~--- 243 (605)
..+...|++++|++.++.-.. .|..+|. .....+.+.|+.++|..+|+.+...+ |+...|-..+..+. ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccc
Confidence 445667777777777766543 4444443 44556667777777777777777654 55444444433332 11
Q ss_pred --CchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCCh-hHHHHHHH
Q 039695 244 --GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLG-RFSLDLFN 320 (605)
Q Consensus 244 --~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~ 320 (605)
...+....+++.+...- |.......+.-.+.....+ ..+..++.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---------------------------------p~s~~~~rl~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---------------------------------PRSDAPRRLPLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---------------------------------ccccchhHhhcccCCHHHHHHHHHHHHH
Confidence 12233333333332221 1111111111111111111 23445566
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-------------CCCCcH--HHHHHHHHHHhhcCCHHH
Q 039695 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY-------------GIIPDA--KHYTCVVDMLGRTGRLDE 385 (605)
Q Consensus 321 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~ 385 (605)
.+...|+++ +|..|-.-|......+-..+++....... .-.|+. -++.-+...|.+.|++++
T Consensus 136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 677777764 45555555555555555555555443221 112443 344666788889999999
Q ss_pred HHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 386 AYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 386 A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
|++++++ +...|. .+..|..-...+...|++++|.+.++.+.++++.|-..-.-.+..+.++|+.++|.++.......
T Consensus 213 Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 213 ALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 9999987 445555 35688888999999999999999999999999988777777778888999999999999998877
Q ss_pred CC
Q 039695 465 GI 466 (605)
Q Consensus 465 ~~ 466 (605)
+.
T Consensus 292 ~~ 293 (517)
T PF12569_consen 292 DV 293 (517)
T ss_pred CC
Confidence 75
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=7.1e-06 Score=84.69 Aligned_cols=302 Identities=11% Similarity=0.067 Sum_probs=174.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHH-HHHHHHHHc----
Q 039695 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWT-SIIVAHAQN---- 207 (605)
Q Consensus 135 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~-~li~~~~~~---- 207 (605)
...+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..+|..+.. |+-..|- .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34557889999999999775544 344566778888999999999999999999976 4444444 444444222
Q ss_pred -CChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch-hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039695 208 -AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL-VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285 (605)
Q Consensus 208 -g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 285 (605)
...+...++|+++...- |.......+.-.+.....+ ..+..+.....+.|+| .+++.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25677788888887643 5544444343233322222 3455566666777765 35666666665443333333
Q ss_pred HHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 039695 286 KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND--VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI 363 (605)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 363 (605)
+++..... .+...|.....- ....-.|.. .++..+...|...|++++|.++.+..+ ..
T Consensus 164 ~l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~h 223 (517)
T PF12569_consen 164 SLVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EH 223 (517)
T ss_pred HHHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hc
Confidence 33222110 000000000000 000112333 233444555667777777777777665 34
Q ss_pred CCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------
Q 039695 364 IPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN------ 436 (605)
Q Consensus 364 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------ 436 (605)
.|+ ++.|..-...|-+.|++++|.+.++....-...+..+-+-....+.+.|++++|.+.+......+-+...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 566 6777777777777777777777776654111111444444555666777777777777766554421111
Q ss_pred -hH--HHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 437 -AY--VTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 437 -~~--~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.| .--+.+|.+.|++..|.+-|..+.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12 2456778888888888777666644
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=1.1e-06 Score=84.23 Aligned_cols=226 Identities=14% Similarity=0.064 Sum_probs=144.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCC-CcHhHHHHHHHHH
Q 039695 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE-FNDVVASALVDMY 275 (605)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y 275 (605)
..-+.++|...|+++.++.- +.. + ..|.......+...+....+-+.+..-+...+..... .+..+......+|
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~e---i~~-~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSE---IKK-S-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHH---S-T-T-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHH---hcc-C-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 33455666666666654432 222 2 2444444444444343323333333333222222222 3444444455677
Q ss_pred HhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHH
Q 039695 276 AKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH----SGLVDEGI 351 (605)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~ 351 (605)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 8889999999888876 55666677788999999999999999999864 333 445555555543 34688999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCCh-HHHHHHHHHHHh
Q 039695 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRV-DIAVEASNQLIE 429 (605)
Q Consensus 352 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 429 (605)
.+|+++..+ ..+++.+.+.+..+....|++++|.+++.+. ...|+ ++.+...++.+....|+. +.+.+.+.++..
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999998543 4577888888999999999999999998874 34443 467777888888888887 677888889888
Q ss_pred cCCCCC
Q 039695 430 SNQQVA 435 (605)
Q Consensus 430 ~~p~~~ 435 (605)
..|+++
T Consensus 265 ~~p~h~ 270 (290)
T PF04733_consen 265 SNPNHP 270 (290)
T ss_dssp HTTTSH
T ss_pred hCCCCh
Confidence 888865
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=4.1e-06 Score=78.20 Aligned_cols=381 Identities=15% Similarity=0.090 Sum_probs=226.9
Q ss_pred HHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 039695 69 INCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLI 145 (605)
Q Consensus 69 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 145 (605)
..+|-+.|++++|..++..+.+ ++...|-.|.-++.-.|.+.+|..+-....+ +.---..++...-+.++-+
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 3455677888888888876632 5556666666666666777777766543321 2223334445555677777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHHH-HHHHHHcCChhHHHHHHHHHHH
Q 039695 146 TGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSI-IVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 146 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~ 222 (605)
+-..+++.+... ..-.-+|..+.--.-.+++|.+++.++.. |+-...|.- .-+|.+..-++-+.+++.-..+
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 777777766542 23334455554555678899999988754 555566654 3466777777777777776655
Q ss_pred cCCCCCChhHHHhHHHhhc--c--cCchhh--HHH----------HHHHHHHhCC------C------C-----cHhHHH
Q 039695 223 QSRDRPNQHMLASVINACA--S--LGRLVS--GKV----------AHGVVVRSGC------E------F-----NDVVAS 269 (605)
Q Consensus 223 ~~~~~p~~~t~~~ll~a~~--~--~~~~~~--a~~----------~~~~~~~~g~------~------~-----~~~~~~ 269 (605)
. .||.. +..=+.+|- + .|+..+ -+. ..+.+.+.++ + | -+...-
T Consensus 214 q---~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 214 Q---FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred h---CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 3 24432 222222221 1 111111 011 1112222110 0 1 112233
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCC-------hhHHHHHHHHHHHcCCCCCHHH-HHHHHHHH
Q 039695 270 ALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGL-------GRFSLDLFNEMISRGIKPNDVT-FVGVLHAC 341 (605)
Q Consensus 270 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~ 341 (605)
.|+-.|.+.+++.+|..+..++...++.-|-.-...++..|+ ..-|...|+-.-+++..-|... --++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 456668899999999999888765444444332233344443 2334444443333444444322 23455566
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHH-HHHHHcCChHHH
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL-SASRLHGRVDIA 420 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll-~~~~~~g~~~~a 420 (605)
.-..++++.+-+++.+ +.+=...|...+| +.++++..|.+.+|.++|-.+....-.+..+|.+++ .+|..++.++.|
T Consensus 370 FL~~qFddVl~YlnSi-~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSI-ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 6677889999888888 5655555566654 788999999999999999887622112266776655 566778888888
Q ss_pred HHHHHHHHhcC-CCCCc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 039695 421 VEASNQLIESN-QQVAN-AYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468 (605)
Q Consensus 421 ~~~~~~~~~~~-p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 468 (605)
..++ ++.+ |.+.. ....+++-|.+++.+--|.+.|+.+...+..|
T Consensus 448 W~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 6654 4444 43333 34456778899999999999999998876654
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.76 E-value=0.00037 Score=70.81 Aligned_cols=442 Identities=12% Similarity=0.031 Sum_probs=256.2
Q ss_pred ccchHHHHHHHHHhhhC-CCCCChhhHHH-HHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 039695 8 NLIFTLAASSLTRQNKR-SSCHTKAHFIQ-QLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLF 85 (605)
Q Consensus 8 ~~~~~~a~~~l~~m~~~-g~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 85 (605)
.++++..++..+.+... +-.++...+-. .|...++..++......-++. -..+.+.|..+--.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-DLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc-CcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 45666666666665542 11222222222 233334444443333333332 2345667777766666678999999999
Q ss_pred hcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CC
Q 039695 86 DEML---EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP-NEFTFATVIKACSMLADLITGKQIHTHIETFG-FQ 160 (605)
Q Consensus 86 ~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~ 160 (605)
.... ..|...|--+--.-++.|+++.....-.+..+. .| ....|.....+.--.|+...|..+.+...+.. -.
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9763 346677777766667788888888887777764 33 44567778888888899999999999888775 24
Q ss_pred CchhHHHHHH------HHHHhCCCHHHHHHHHhhcCC--CChhh-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChh
Q 039695 161 YNLVVCSSLV------DMYGKCNDVDGARRVFDLMGC--RNVVS-WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231 (605)
Q Consensus 161 ~~~~~~~~Li------~~y~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 231 (605)
|+...+.-.. ....+.|..+.|.+-+..... -|-.. -.+....+.+.++.++|..++..+.... ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn---Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN---PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---chhH
Confidence 5555544332 234567888888887776543 12222 2344566788999999999999998754 7777
Q ss_pred HHHhHHHhhc-c-cCchhhHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHH
Q 039695 232 MLASVINACA-S-LGRLVSGKVAHGVVVRSGCEFN--DVVASALVDMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGA 306 (605)
Q Consensus 232 t~~~ll~a~~-~-~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~ 306 (605)
-|...+..+. + .+..+....++....+.-.... ..+--.+++. ..-.+...+++..+.+. -+..+..+.+-|
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~---eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG---EELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc---chhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 6666555544 2 2333333355554443211000 0000001100 01111122222222222 122333333333
Q ss_pred HHcCChhHHHHHHHHHH----HcC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHH
Q 039695 307 AKYGLGRFSLDLFNEMI----SRG----------IKPNDV--TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKH 369 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~----~~g----------~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 369 (605)
-.-...+-..++.-.+. ..| -+|... |+..+...+-+.|+++.|..+.+..+ +-.|+ ++.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEl 407 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIEL 407 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHH
Confidence 22111111111111111 111 134443 44456677888999999999999775 66888 778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hHHH
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQV--DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-------AYVT 440 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 440 (605)
|..=..++...|.+++|..++++... .|| ...-.--..-..+.+++++|.++..+..+.+-+-.. .|..
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aD--R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTAD--RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchh--HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 88888999999999999999988652 233 222223334445778899999998887765531111 2222
Q ss_pred H--HHHHHhcCChhHHHHHHHHHHh
Q 039695 441 L--SNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 441 l--~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
+ +.+|.++|++..|.+=|..+.+
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 2 5678888888888876666544
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=0.00015 Score=68.09 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHH-----HHhcCCHHHH
Q 039695 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM-----YAKCGSVNYS 284 (605)
Q Consensus 210 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-----y~~~g~~~~A 284 (605)
.+.|++++-.+.. +.|... ..++--+.+.++..+|..+...+. ...|-.++...++.+ ......+.-|
T Consensus 270 gEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 270 GEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 3555555544433 223222 233444667788887776654432 122323333333322 2223346778
Q ss_pred HHHHhccCC-----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 039695 285 DKVFNRISN-----PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359 (605)
Q Consensus 285 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 359 (605)
.+.|+-.-+ ..+.--.+|.+.+.-..++++.+-++.....- ..-|...-..+..|.+..|.+.+|+++|-.+.
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is- 420 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS- 420 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-
Confidence 888876643 33445667777777788899999988888775 33344444457889999999999999998773
Q ss_pred hcCCCCcHHHH-HHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 360 KYGIIPDAKHY-TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 360 ~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
...+ .|..+| ..|...|.++++++-|++++-++....+ .-.....+.+-|-+.+.+--|-++|..+-.++|.. ..|
T Consensus 421 ~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e-~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW 497 (557)
T KOG3785|consen 421 GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSE-RFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW 497 (557)
T ss_pred Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc
Confidence 2222 344455 4566788999999999999988863322 22344455677889999999999999988888753 322
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~ 470 (605)
. |+--...-+|..+......|.|
T Consensus 498 e---------GKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 498 E---------GKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred C---------CccchHHHHHHHHHcCCCCCCc
Confidence 2 3333344555555544443333
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=1.9e-05 Score=79.67 Aligned_cols=200 Identities=10% Similarity=-0.036 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHH
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPND--VTFVGVLH 339 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~ll~ 339 (605)
.....+...+...|++++|.+.+++..+ .+...+..+...|...|++++|..++++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3444455666777777777777776653 3344566666777777777777777777665321 1222 23445666
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCcHHHH-H--HHHHHHhhcCCHHHHHHH---HHhCCCC-C-CchhhHHHHHHHHH
Q 039695 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY-T--CVVDMLGRTGRLDEAYKL---AKSIQVD-P-DGGPLLWGTLLSAS 411 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~-p-~~~~~~~~~ll~~~ 411 (605)
.+...|++++|..+++.........+..... + .++..+...|..+.+.++ ....... | ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 6777777777777777763221111111111 1 222333333432222222 1111101 1 10012223455666
Q ss_pred HHcCChHHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 412 RLHGRVDIAVEASNQLIESN-Q--------QVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...|+.+.|..+++.+.... . ...........++...|++++|.+.+.......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77888888888887776532 1 123345566777889999999999998887654
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=6.5e-05 Score=79.46 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=119.0
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 039695 279 GSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358 (605)
Q Consensus 279 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 358 (605)
++++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. -|+..|..++..+++.|.+++-.+++...
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma- 1159 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA- 1159 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH-
Confidence 344444444444433 357999999999999999999887542 36778999999999999999999988866
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
++..-+|.+. +.|+-+|++.+++.|-.+++. .|+ ..-.....+-|...|.++.|.-+|.. .+.|
T Consensus 1160 Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN--~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~ 1223 (1666)
T KOG0985|consen 1160 RKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPN--VANIQQVGDRCFEEKMYEAAKLLYSN--------VSNF 1223 (1666)
T ss_pred HHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCC--chhHHHHhHHHhhhhhhHHHHHHHHH--------hhhH
Confidence 4445566654 468999999999999877764 456 66777888889999999888877754 4567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 039695 439 VTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
..|+..+...|.++.|...-++.
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 77888888888888777655443
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=1.6e-07 Score=90.01 Aligned_cols=247 Identities=11% Similarity=0.024 Sum_probs=161.6
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 039695 203 AHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282 (605)
Q Consensus 203 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 282 (605)
-+.-.|++..++.-.. ..... -..+..+..-+.+++...|+.+.+ ...+.+.. .|.......+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 3445688888876555 22221 122344555667777777876543 33343333 566666555555444435556
Q ss_pred HHHHHHhccC-CCC---cchHHHH-HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 283 YSDKVFNRIS-NPS---VVTYTSM-IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 283 ~A~~~~~~~~-~~~---~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.+..-+++.. ++. ..++..+ ...+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665555443 321 1222222 23455679999999998652 34566667788899999999999999999
Q ss_pred HHhcCCCCcHH---HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 358 YRKYGIIPDAK---HYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 358 ~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
. .+..|.. ...+.+..+.-.+.+++|..+|+++..+...++.+.+.+..+....|++++|+.+++++++.+|.+
T Consensus 158 ~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 Q---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp H---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred H---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 4 3455522 233334444344579999999999865533338889999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 039695 435 ANAYVTLSNTYALAGEW-ENVHSLRSEMKRT 464 (605)
Q Consensus 435 ~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~ 464 (605)
+.+...++-+....|+. +.+.+.+.+++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6688888887764
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.9e-05 Score=81.01 Aligned_cols=366 Identities=13% Similarity=0.140 Sum_probs=209.7
Q ss_pred HHHHHHHHHhCCC--CchHHHHHHHHHHHcCCChhHHHHHHhcC-CCCChhh-----HHHHHHHHHhcCChhHHHHHHHH
Q 039695 47 ASVHSEILKSGFL--SNTFTLNHLINCYVRLKKTQVARQLFDEM-LEPNVVS-----YTSLMAGYINMGQPQIALLLFQK 118 (605)
Q Consensus 47 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~ 118 (605)
+++.++++..+++ .|+.-.+..+.++...+-+.+-.++++++ .++++++ -|.||-.-.+ .+..+..+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHH
Confidence 4555555555543 34445555566666666666666666665 3344433 2223222222 234455555555
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHH
Q 039695 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWT 198 (605)
Q Consensus 119 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 198 (605)
+-.-+. | -+...+...+-+++|..+|... ..+....+.|+. .-+.++.|.+.-++..+| ..|+
T Consensus 1046 LdnyDa-~------~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWs 1108 (1666)
T KOG0985|consen 1046 LDNYDA-P------DIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWS 1108 (1666)
T ss_pred hccCCc-h------hHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHH
Confidence 433211 1 1223344455566666666542 334444444543 346677777777776555 4699
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 039695 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278 (605)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 278 (605)
.+..+-.+.|...+|++-|-+ ..|+..|..++..+.+.|.+++-.+++....+..-+| .+-+.|+-+|++.
T Consensus 1109 qlakAQL~~~~v~dAieSyik-------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIK-------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHh
Confidence 999999999999999988754 2467789999999999999999999988888776554 4556789999999
Q ss_pred CCHHHHHHHHhccCCCCcch--------------------------HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 279 GSVNYSDKVFNRISNPSVVT--------------------------YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 279 g~~~~A~~~~~~~~~~~~~~--------------------------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
+++.+-++++. .||+.. |..|...+...|++..|.+.-++. .+..
T Consensus 1180 ~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1180 NRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred chHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 99888776654 244433 444444444444444444433322 2345
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCchhhHHHHHHHH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ--VDPDGGPLLWGTLLSA 410 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~~~ll~~ 410 (605)
||-.+-.||...+.+..|. |. ..++.....-..-|+.-|-..|.++|-+.+++... .+.. ...|+-|.-.
T Consensus 1251 tWK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH--MgmfTELaiL 1322 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH--MGMFTELAIL 1322 (1666)
T ss_pred HHHHHHHHHhchhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH--HHHHHHHHHH
Confidence 5655555665554443332 21 11222334445566777777777777777776532 1222 4456666655
Q ss_pred HHHcCChHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 411 SRLHGRVDIAVEASNQLIE-SNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 411 ~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
|.+.. ++...+.++-... .+ .--++.+..++.-|.+..-++.+..+
T Consensus 1323 Yskyk-p~km~EHl~LFwsRvN------ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1323 YSKYK-PEKMMEHLKLFWSRVN------IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHhcC-HHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55543 3333333332221 11 11356667777777777666665543
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.6e-06 Score=80.91 Aligned_cols=374 Identities=13% Similarity=0.084 Sum_probs=229.3
Q ss_pred HHHcCCChhHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHH
Q 039695 71 CYVRLKKTQVARQLFDEM---LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN-EFTFATVIKACSMLADLIT 146 (605)
Q Consensus 71 ~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 146 (605)
+....|++++|...|.+. ..+|-+.|+.=..+|+..|++++|++=-.+-++ +.|+ ...|+..-.+....|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 345679999999999875 335778899999999999999999887766665 4555 4478888888899999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHh------hcCC-C------ChhhHHHHHHHHHHc------
Q 039695 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFD------LMGC-R------NVVSWTSIIVAHAQN------ 207 (605)
Q Consensus 147 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~------~m~~-~------~~~~~~~li~~~~~~------ 207 (605)
|...|.+-++.. +.|...++.|.+++... . .+.+.|. .... | ....|..++..+-++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999888765 56777888888887111 0 1111111 1100 0 111233333322211
Q ss_pred ----CChhHHHHHHHHH-----HHcC------CCCCC------------h----------hHHHhHHHhhcccCchhhHH
Q 039695 208 ----AQGHEALEMFREF-----NYQS------RDRPN------------Q----------HMLASVINACASLGRLVSGK 250 (605)
Q Consensus 208 ----g~~~~A~~~~~~m-----~~~~------~~~p~------------~----------~t~~~ll~a~~~~~~~~~a~ 250 (605)
.+...|+..+... ...+ +..|. . .-...+.++.-+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 1111221111110 0000 01110 0 01223334444445555566
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc----------chHHHHHHHHHHcCChhHHHHHHH
Q 039695 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV----------VTYTSMIVGAAKYGLGRFSLDLFN 320 (605)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~l~~ 320 (605)
+-+....... .+..-++.....|...|.+......-+...+..- .....+..+|.+.++++.++..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 6665555544 4555556666677777766655544443322111 112223445666677777888877
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 039695 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA-KHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD 398 (605)
Q Consensus 321 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 398 (605)
+....-..||..+ +....+++....+.. .-+.|.. .-.-.-...+.+.|++.+|+..+.++. ..|+
T Consensus 323 kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 7665444443221 122333333333322 1334442 111222566778899999999998854 3444
Q ss_pred chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 399 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|+.|.+.|.+-.+.+
T Consensus 391 -Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 -DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 488999999999999999999999999999999999999998999999999999999998877765
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-05 Score=75.66 Aligned_cols=264 Identities=8% Similarity=-0.070 Sum_probs=167.1
Q ss_pred hCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 039695 56 SGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSL---MAGYINMGQPQIALLLFQKMLGNLVWPNEFTFA 132 (605)
Q Consensus 56 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~ 132 (605)
.-++-|+....++...|...|+.++|...|++...-|+.+-.+| .-.+.+.|+.++...+-..+.... +-....|.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34566777888888888888888888888887644333322221 112346677777777766665431 11222233
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC
Q 039695 133 TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQ 209 (605)
Q Consensus 133 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 209 (605)
.-+.......+++.|+.+-+..++.. +.+...+-.=.+.+...|+.++|.-.|+.... -+..+|.-|+.+|...|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 33333345567777777777766543 22333333333666778888888888876543 367788889999998898
Q ss_pred hhHHHHHHHHHHHcCCCCCChhHHHhHH-Hhhcc-cCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039695 210 GHEALEMFREFNYQSRDRPNQHMLASVI-NACAS-LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287 (605)
Q Consensus 210 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 287 (605)
+.+|.-+-+..... .+.+..+.+.+- ..|.- ...-++|+.+++..++.. |.-....+.+...+...|..+++..+
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHH
Confidence 88888777665543 344555555442 33332 233466777776665543 22244556667777777777777777
Q ss_pred HhccC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 288 FNRIS--NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 288 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
+++.. .+|....+.|...+...+.+.+|++.|.....
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77665 37777777777777777777777777777665
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=0.00018 Score=67.39 Aligned_cols=346 Identities=11% Similarity=0.056 Sum_probs=195.8
Q ss_pred HHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHH---HHHHhcCChhHHHHHHHHHHhCCCCCChhhHH-HHHHHHhccC
Q 039695 67 HLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLM---AGYINMGQPQIALLLFQKMLGNLVWPNEFTFA-TVIKACSMLA 142 (605)
Q Consensus 67 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~-~ll~a~~~~~ 142 (605)
-|-..+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+.++ .+||-..-. .--..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3445555677888888888877777777777665 366677777777777777766 456633211 1112345667
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 143 DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 143 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
.++.|..=|+.+++.. |+.. ....++.+.--.++-+.+. ..+..+..+|+...|++....+.+
T Consensus 121 ele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~------------~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLV------------QQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHH------------HHHHHHhcCCchhhHHHHHHHHHh
Confidence 7777777777777653 2211 1112222222222222221 234445567888888888888877
Q ss_pred cCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH
Q 039695 223 QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM 302 (605)
Q Consensus 223 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 302 (605)
.. +.|...+..-..+|...|.+..|..-+..+.+..- .+.....-+-..+...|+.+.+....++..+-|+..-.
T Consensus 184 i~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~-- 258 (504)
T KOG0624|consen 184 IQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL-- 258 (504)
T ss_pred cC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh--
Confidence 53 56777777777777788877777766666655442 23444445566667777777777777766543322110
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHH
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-----AKHYTCVVDML 377 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~ 377 (605)
+|..-....+..+.++.|.+ ....+.+.++.+-.+..++ ..|. ...+..+-..+
T Consensus 259 --Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 259 --CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred --HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecc
Confidence 01111111222222222222 1223444444444444432 2333 22333444556
Q ss_pred hhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 039695 378 GRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHS 456 (605)
Q Consensus 378 ~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 456 (605)
...|++-+|+....+.. ..|+ +..++.--..+|.....++.|+.-|+++.+.++++..+-.. .+.|.+
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akr 386 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKR 386 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHH
Confidence 66777888877776643 3443 35566667777777778888888888888888877543222 345666
Q ss_pred HHHHHHhCCCcc
Q 039695 457 LRSEMKRTGIHK 468 (605)
Q Consensus 457 ~~~~m~~~~~~~ 468 (605)
+.++..+++.-+
T Consensus 387 lkkqs~kRDYYK 398 (504)
T KOG0624|consen 387 LKKQSGKRDYYK 398 (504)
T ss_pred HHHHhccchHHH
Confidence 666555555433
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=0.00014 Score=83.23 Aligned_cols=326 Identities=9% Similarity=-0.045 Sum_probs=185.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----C----C--h--hhHHHHHHHHHH
Q 039695 139 SMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC----R----N--V--VSWTSIIVAHAQ 206 (605)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----~----~--~--~~~~~li~~~~~ 206 (605)
...|+++.+...+..+.......+..........+...|++++|...++.... . + . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34456666555555442111112222333444455566777777766654421 1 0 0 111112234456
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCh----hHHHhHHHhhcccCchhhHHHHHHHHHHh----CC-CCcHhHHHHHHHHHHh
Q 039695 207 NAQGHEALEMFREFNYQSRDRPNQ----HMLASVINACASLGRLVSGKVAHGVVVRS----GC-EFNDVVASALVDMYAK 277 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~ 277 (605)
.|++++|...+++....- ...+. .....+...+...|+++.|...+...... |. .........+...+..
T Consensus 465 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 777888877777765421 11121 23344445556677887777777666542 21 1123345556667777
Q ss_pred cCCHHHHHHHHhccCC-------CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHh
Q 039695 278 CGSVNYSDKVFNRISN-------PS----VVTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPN--DVTFVGVLHACS 342 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a~~ 342 (605)
.|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888877765432 11 122334445566678898888888876542 11122 233444555667
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCcHHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCCCCchh----hHHHHHHHHHHH
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHY-----TCVVDMLGRTGRLDEAYKLAKSIQVDPDGGP----LLWGTLLSASRL 413 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~----~~~~~ll~~~~~ 413 (605)
..|+.++|.+.+.....-..-......+ ...+..+...|+.+.|..++........... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7889999988887774321111111111 1122444567899999998876542111001 124566677888
Q ss_pred cCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 414 HGRVDIAVEASNQLIESN------QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.|+.++|...++++++.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999888642 1122366778888999999999999998887654
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.4e-06 Score=92.79 Aligned_cols=202 Identities=13% Similarity=0.128 Sum_probs=170.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISN--------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 333 (605)
|.+...|-..|......+++++|++++++... .-.-.|.++++.-...|.-+...++|++..+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 55667888889999999999999999998763 22357999998888889888999999999873 212356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCC-chhhHHHHHHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPD-GGPLLWGTLLSAS 411 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~~~ll~~~ 411 (605)
|..|..-|.+.+.+++|.++++.|.++++ .....|..+++.+.+..+-+.|..++++ |..-|. .......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999887 5678899999999999999999999876 332232 1144555566667
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
.++|+.+++..+|+..+...|.....|..++++-.+.|..+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999998774
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=5.6e-05 Score=70.61 Aligned_cols=291 Identities=8% Similarity=0.033 Sum_probs=173.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCChhHHH-hHHHhhcccC
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSII---VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA-SVINACASLG 244 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~-~ll~a~~~~~ 244 (605)
|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-+.+..+ .+||-..-. .--..+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcc
Confidence 334444455555555555555555554444432 345555555555555555544 344432111 1112334555
Q ss_pred chhhHHHHHHHHHHhCCCCc----H----------hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHH
Q 039695 245 RLVSGKVAHGVVVRSGCEFN----D----------VVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAA 307 (605)
Q Consensus 245 ~~~~a~~~~~~~~~~g~~~~----~----------~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 307 (605)
.++.|..-|..+++.....+ . ......+..+.-.|+...|+.....+.+ -|+..|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 66666665555555432110 0 0111223334556777777777776654 35556666677788
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHH----HH---------H
Q 039695 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT----CV---------V 374 (605)
Q Consensus 308 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~l---------i 374 (605)
..|.+..|+.=++...+. -.-|..++.-+-.-+...|+.+.++...++-. .+.||..... .| +
T Consensus 201 ~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 888888777766655443 12234445455555566677777776666554 5667633221 11 1
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCCCchhh---HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 375 DMLGRTGRLDEAYKLAKS-IQVDPDGGPL---LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~-m~~~p~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
....+.++|-++++-.+. |...|..... .+..+-.++...+++.+|++...++++.+|++..++.--+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 123345667777666655 4445542233 344566777888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 039695 451 WENVHSLRSEMKRTGI 466 (605)
Q Consensus 451 ~~~a~~~~~~m~~~~~ 466 (605)
+|+|..-+++..+.+-
T Consensus 357 YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999998876543
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=3.1e-05 Score=79.03 Aligned_cols=344 Identities=16% Similarity=0.130 Sum_probs=199.9
Q ss_pred HHHHHHHHcCCChhHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh
Q 039695 66 NHLINCYVRLKKTQVARQLFDEMLEPNVV-SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL 144 (605)
Q Consensus 66 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 144 (605)
..-|.+|....++++|+.+-+-.-.|... .-.+.++++...|+-++|-++- . .|..+. +.|+.|.+.|..
T Consensus 561 e~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd~l-aaiqlyika~~p 631 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGDGL-AAIQLYIKAGKP 631 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCccH-HHHHHHHHcCCc
Confidence 35678888888999999887766555332 2344556666677776665442 1 122222 345566666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh--------------------------hh-H
Q 039695 145 ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNV--------------------------VS-W 197 (605)
Q Consensus 145 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~--------------------------~~-~ 197 (605)
..|...... +..+..|......+..++.+..-+++|-.+|+.+..++- +. -
T Consensus 632 ~~a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~le 709 (1636)
T KOG3616|consen 632 AKAARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLE 709 (1636)
T ss_pred hHHHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHH
Confidence 555443211 111222333333333333333333444444443332211 10 0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 039695 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277 (605)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 277 (605)
......+.+.|+++.|+.-|-+.. .....+.+......|..|..+++.+...... ...|..+.+-|+.
T Consensus 710 e~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan 777 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYAN 777 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhcc
Confidence 111222334455555554443321 1123344555666778888888777665422 2345567788888
Q ss_pred cCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.|+++.|+++|-+.. .++--|..|.+.|++++|.++-.+.. |.......|.+-..-.-..|.+.+|.+++-.+
T Consensus 778 ~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 778 KGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred chhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 888888888887543 45666788888888888887765442 33334455555555566778888887776544
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 358 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
| .|+. .|.+|-+.|..++.+++.++-. |+.-..+-..+..-+...|+...|+..|-++ .-
T Consensus 851 ----~-~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d 910 (1636)
T KOG3616|consen 851 ----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GD 910 (1636)
T ss_pred ----c-CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hh
Confidence 2 3543 4678888888888888887753 3322456666777777888888887776543 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
|..-+++|-..+.|++|.++-+
T Consensus 911 ~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHHh
Confidence 4556677777777777776654
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=8.8e-05 Score=74.82 Aligned_cols=195 Identities=12% Similarity=-0.032 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH---HH
Q 039695 95 SYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPNEFTFA-TVIKACSMLADLITGKQIHTHIETFGFQYNLVVCS---SL 169 (605)
Q Consensus 95 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L 169 (605)
.|..+...+...|+++.+...+.+..+... .++..... .....+...|+++.+.++++.+.+.. +.+...+. .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444455555555555444444433211 11211111 11122345566666666666666543 23333333 11
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch
Q 039695 170 VDMYGKCNDVDGARRVFDLMGCRN---VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246 (605)
Q Consensus 170 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 246 (605)
.......|..+.+.+.++.....+ ...+..+...+...|++++|...+++..... +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCH
Confidence 111222344455555554422211 1222334445666677777777776666543 22334444455555555666
Q ss_pred hhHHHHHHHHHHhCC-CCcH--hHHHHHHHHHHhcCCHHHHHHHHhccC
Q 039695 247 VSGKVAHGVVVRSGC-EFND--VVASALVDMYAKCGSVNYSDKVFNRIS 292 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 292 (605)
++|...+....+... .++. ..+..+...+...|+.++|..+|++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666655555544321 1111 223345555556666666666665543
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.4e-05 Score=71.56 Aligned_cols=189 Identities=10% Similarity=0.041 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISN-----PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 342 (605)
+|.-...+.+.|+.+.|.+.+-.|+. .|++|...+.-.= ..+++.+..+-+.-+..... -...||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 34444456788999999999999984 5677766543222 23445554444454554433 34578999999999
Q ss_pred ccCcHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCC---h
Q 039695 343 HSGLVDEGIQHLDSMYRKYGI-IPDAKHYTCVVDMLG-RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR---V 417 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~---~ 417 (605)
+..-++.|-.++.+-. ..-. -.+...|+ |++++. -.-..++|.+-++.+...-.+......+-+.--+..++ .
T Consensus 322 KNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9988888888776431 1111 11233444 333333 33456666665554320000000011111111111111 1
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
..+++-+++.+++-- .+...-...|.+..++..+.++|..-.+
T Consensus 400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 223334444444331 2445566778888999999999876654
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5.3e-08 Score=59.52 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=27.3
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 039695 158 GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190 (605)
Q Consensus 158 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 190 (605)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=4.5e-08 Score=59.84 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=26.3
Q ss_pred CCCCchHHHHHHHHHHHcCCChhHHHHHHhcCC
Q 039695 57 GFLSNTFTLNHLINCYVRLKKTQVARQLFDEML 89 (605)
Q Consensus 57 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 89 (605)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888773
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=6e-06 Score=77.85 Aligned_cols=181 Identities=11% Similarity=0.020 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN--PSV----VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND--VTFVG 336 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ 336 (605)
...+..+...|.+.|++++|...|+++.. |+. .+|..+...|.+.|++++|+..++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44555556666666666666666665543 221 24455556666666666666666666653211111 12333
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHH
Q 039695 337 VLHACSHS--------GLVDEGIQHLDSMYRKYGIIPDA-KHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407 (605)
Q Consensus 337 ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~l 407 (605)
+..++... |+.++|.+.++.+... .|+. ..+..+... +...... ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-------------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-------------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-------------HHHHHHH
Confidence 33333332 4555666666655432 3331 111111100 0000000 0111245
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVA---NAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|..+++.+..+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678889999999999999999877654 688999999999999999999999887653
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00098 Score=67.11 Aligned_cols=393 Identities=12% Similarity=0.043 Sum_probs=225.2
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHH--HHHHHH--hcCChhHHHHHHHHHHhCCCC
Q 039695 50 HSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTS--LMAGYI--NMGQPQIALLLFQKMLGNLVW 125 (605)
Q Consensus 50 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~--~~g~~~~a~~~~~~m~~~g~~ 125 (605)
...++..+ +-+...+..=+-+..+.+.+++|+++.+.-..- .+++. +=.+|+ +.+..++|+..++ |..
T Consensus 35 ~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~ 106 (652)
T KOG2376|consen 35 ANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLD 106 (652)
T ss_pred HHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-----ccc
Confidence 33444444 555666666667788899999999777654321 22222 244554 6788999999887 444
Q ss_pred CChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHH---H
Q 039695 126 PNEF-TFATVIKACSMLADLITGKQIHTHIETFGFQY-NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS---I 200 (605)
Q Consensus 126 pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---l 200 (605)
++.. +...-...|.+.|++++|..+|+.+.+++.+. +...-..++..-. .-.+. +.+..+.....+|.. .
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~syel~yN~ 181 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDSYELLYNT 181 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcchHHHHHHH
Confidence 4333 55555566789999999999999998886321 2222222222111 11121 345555433334443 3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC------CCCChh-------HHHhHHHhhcccCchhhHHHHHHHHHHhCCCCc---
Q 039695 201 IVAHAQNAQGHEALEMFREFNYQSR------DRPNQH-------MLASVINACASLGRLVSGKVAHGVVVRSGCEFN--- 264 (605)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~m~~~~~------~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--- 264 (605)
...+...|++.+|+++++.....+. ..-+.. .-..+.-++-..|+-+++..++..+++......
T Consensus 182 Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 182 ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHH
Confidence 4567789999999999998832110 111111 112333455678999999999999998764322
Q ss_pred HhHHHHHHHHHHhcCCHH-HHHHHHhccCCCCc--------------chHHH-HHHHHHHcCChhHHHHHHHHHHHcCCC
Q 039695 265 DVVASALVDMYAKCGSVN-YSDKVFNRISNPSV--------------VTYTS-MIVGAAKYGLGRFSLDLFNEMISRGIK 328 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~--------------~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~ 328 (605)
....|.|+.+-.-..-.+ .+...|+....... +..|. ++..|. +..+.+.++-... .+..
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~l--p~~~ 337 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASL--PGMS 337 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhC--CccC
Confidence 223344443322111111 23333333322111 11222 222222 2222333332221 1233
Q ss_pred CCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHH--------hCC-C
Q 039695 329 PNDVTFVGVLHACSH--SGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVVDMLGRTGRLDEAYKLAK--------SIQ-V 395 (605)
Q Consensus 329 pd~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~--------~m~-~ 395 (605)
|. ..+..++..+.. ......+.+++...... .|. ..+--.++......|+++.|.+++. .++ .
T Consensus 338 p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~---~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 338 PE-SLFPILLQEATKVREKKHKKAIELLLQFADG---HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 33 344555555433 22466777777766332 333 5566677888899999999999988 443 2
Q ss_pred CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 396 DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES----NQQ---VANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 396 ~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
... +.+-.++...+.+.++.+.|..++.+++.- .+. ....+..++..-.+.|+-++|..+++++.+..
T Consensus 414 ~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 414 KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 223 567777888888888888888888887752 122 22244455556667899999999999998743
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=0.00021 Score=73.19 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=154.7
Q ss_pred HhCCCHHHHHHHHhhcCCCChhh--HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHH
Q 039695 174 GKCNDVDGARRVFDLMGCRNVVS--WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKV 251 (605)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 251 (605)
.....|.+|..+++.+..+++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|+|+.|.+
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHH
Confidence 34455666666666665544332 5555666777777777777765421 23345556667777776666
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-
Q 039695 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN- 330 (605)
Q Consensus 252 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd- 330 (605)
+-... .|.+.....|-+-..-.-+.|++.+|++++-.+..|+. -|..|-++|..+..+.+..+-. ||
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h-----~d~ 880 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH-----GDH 880 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----hhh
Confidence 54433 23344455555555556667777777777776666653 3666777777777777665532 33
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CchhhHHHH-
Q 039695 331 -DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP--DGGPLLWGT- 406 (605)
Q Consensus 331 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~~~- 406 (605)
..|...+..-+...|++..|..-|-+.. -|.+-+++|-..+.|++|.++-+.-.-.. ......|.-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 2455556666777888888887766541 25567888999999999998876432100 000223322
Q ss_pred -----HHHHHHHcCChHHHHH-------------HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 407 -----LLSASRLHGRVDIAVE-------------ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 407 -----ll~~~~~~g~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
-...+.++|-.+.|+. +.+-..+ ...+.++.-+..-+...|++++|.+-+-+..+.+.
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1223344554444443 3322222 22245677777788899999999888777766554
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=1.4e-05 Score=70.79 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=134.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISNPS---VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN-DVTFVGVLHACSH 343 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 343 (605)
..-|.-.|...|+...|..-+++..+.| ..+|..+...|.+.|..+.|.+-|++.... .|+ ....|..-.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHh
Confidence 3445566778888888888888776533 346777777788888888888888877763 343 3344444444566
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHH
Q 039695 344 SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 344 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
.|.+++|.+.|+.....-...--..+|..+.-+..+.|+++.|.+.|++. ...|+ .+.+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 77888888888877654333333667777777777888888888888763 33343 25566777777778888888888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.++....-.+.........+.+--..|+-+.+.+.-..+..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88887777666666777777777788888877777666654
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=9.7e-06 Score=74.05 Aligned_cols=303 Identities=14% Similarity=0.089 Sum_probs=158.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHH-HHHHHHHc
Q 039695 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTS-IIVAHAQN 207 (605)
Q Consensus 131 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~ 207 (605)
|.+++....+..++..+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -.+.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3333433444444555555544443332 12333444444555555555555555555533 22222221 12334455
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhHHHhHHHhh--cccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039695 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINAC--ASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD 285 (605)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 285 (605)
+.+..|+.+...|... |+...-..-+.+. .+.+++..++.+.++....| +..+.+...-...+.|+.+.|.
T Consensus 92 ~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 5566666665555321 2211111111111 13344444444444433211 2233333334445667777777
Q ss_pred HHHhccCC----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH---------
Q 039695 286 KVFNRISN----PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ--------- 352 (605)
Q Consensus 286 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~--------- 352 (605)
+-|+...+ .....||.-+.. .+.|+.+.|+++..+.+++|++-.+. ++ .|..-++..
T Consensus 165 qkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCchhcccchHH
Confidence 77776654 334556654443 45677888888888888887663221 10 011111100
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP--DGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 353 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
+.... -++.+|.-...+.+.|+++.|.+.+..||.+. +.+++|...+.-. -..+++..+.+-+.-++++
T Consensus 235 lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 235 LHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc
Confidence 00000 01223333444668899999999999987321 2226666554322 3456677777778888888
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 431 NQQVANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 431 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
+|-.+.++..++-.|++..-++-|..++-+
T Consensus 306 nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 306 NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 887778999999999999888888887754
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=7.7e-06 Score=74.09 Aligned_cols=119 Identities=11% Similarity=0.148 Sum_probs=96.4
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHH-HHcCC--hH
Q 039695 344 SGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSAS-RLHGR--VD 418 (605)
Q Consensus 344 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~-~~~g~--~~ 418 (605)
.++.+++...++...+ ..| +...|..+...|...|++++|...+++.. ..|+ +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 5666777766766643 345 48889999999999999999999998743 4454 377888888764 67777 59
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+|.++++++++.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999987654
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=3.8e-06 Score=71.94 Aligned_cols=108 Identities=12% Similarity=-0.038 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSAS 411 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~ 411 (605)
+..+..++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...|+... ..|+ ++..|..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3344555666777777777777664 34443 6666667777777777777777776643 2332 256677777777
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...|+.++|+..++++++..|+++..+.....+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 7777777777777777777777766665554443
No 107
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=5.2e-05 Score=73.85 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhc---CC----HH
Q 039695 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRT---GR----LD 384 (605)
Q Consensus 313 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~----~~ 384 (605)
++++.+++++.+...+ |..+|....-++.+.|+++++++.++++++. .| +...|+.....+.+. |. .+
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHH
Confidence 4556666666553222 4455555555555666666666666666532 22 244444444333332 22 24
Q ss_pred HHHHHH-HhCCCCCCchhhHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC----------
Q 039695 385 EAYKLA-KSIQVDPDGGPLLWGTLLSASRLH----GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG---------- 449 (605)
Q Consensus 385 ~A~~~~-~~m~~~p~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---------- 449 (605)
++++.. +.+...|+ +...|+-+...+... ++..+|...+.++++.+|.++.+...|++.|+...
T Consensus 201 ~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 201 SELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 556665 33445554 377898888888773 34567888888888888998889999999998643
Q ss_pred --------ChhHHHHHHHHHH
Q 039695 450 --------EWENVHSLRSEMK 462 (605)
Q Consensus 450 --------~~~~a~~~~~~m~ 462 (605)
..++|.++++.+.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hccccccccHHHHHHHHHHHH
Confidence 2366777777773
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=3.1e-06 Score=72.46 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=89.3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 362 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
.+.|+. +..+...+...|++++|...|+... ..|+ +...|..+..++...|++++|...|+++++++|+++.++..
T Consensus 21 ~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 21 SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445653 5567888899999999999999854 4443 37899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 441 LSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 441 l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
++.++...|++++|...++...+...
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887554
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=1.1e-05 Score=82.60 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=120.7
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHH
Q 039695 159 FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238 (605)
Q Consensus 159 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 238 (605)
++|-...--.+...+...|-...|..+|++. ..|.-.|-+|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhh
Confidence 3455556667778888888888888888875 4677788888888888888877776654 2456655555544
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHH
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
......-++ +|.++++....+
T Consensus 466 v~~d~s~yE-----------------------------------kawElsn~~sar------------------------ 486 (777)
T KOG1128|consen 466 VLHDPSLYE-----------------------------------KAWELSNYISAR------------------------ 486 (777)
T ss_pred hccChHHHH-----------------------------------HHHHHhhhhhHH------------------------
Confidence 433332233 333333221110
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCC
Q 039695 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVD 396 (605)
Q Consensus 319 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~ 396 (605)
.-..+..-..+.++++++.+.|+.-. .+.|- ..+|..+.-+..+.++++.|.+.|.. ....
T Consensus 487 --------------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 487 --------------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred --------------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 00000000111344444444444322 22332 34444444444555555555555544 2234
Q ss_pred CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 397 p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
|+ +...||.+-.+|.+.|+-.+|...++++++.+-.+...|...+-.-.+.|.|++|.+.+.++.+
T Consensus 550 Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 550 PD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 44 2456666666666666666666666666666655555555555555666666666666666554
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=81.20 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=161.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 260 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
+++|--..-..+.+.+.++|-...|..+|++.. .|...|.+|...|+..+|..+..+..+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 345556677788999999999999999999764 788889999999999999999988877 5789999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChH
Q 039695 340 ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
......-+++|.++++....+ .-..+.....+.++++++.+.++. +...|- ...+|-.+..+..+.++.+
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhH
Confidence 988888899999998876433 111222233457899999999986 444442 3679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 419 IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.|.+.|...+.++|++..+|+.+.-+|.+.|+-.+|...+++..+-+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999988774
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=9.1e-06 Score=68.44 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
....-.+...+...|++++|..+|+-+. ..|. +..-|-.|..+|...|++++|+..|..+..++|+++.++..++.+|
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5555566777889999999999999854 3443 3778999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 039695 446 ALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~ 464 (605)
...|+.+.|.+.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.0016 Score=68.02 Aligned_cols=358 Identities=11% Similarity=0.066 Sum_probs=176.9
Q ss_pred chHHHHHHHH--HHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCCChh
Q 039695 61 NTFTLNHLIN--CYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN-L--------VWPNEF 129 (605)
Q Consensus 61 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~pd~~ 129 (605)
|..+-.++++ .|..-|+++.|.+-.+-+... ..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4444444442 345556666666655555442 24555666665555555544444333221 0 0111 1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHHcC
Q 039695 130 TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN-VVSWTSIIVAHAQNA 208 (605)
Q Consensus 130 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g 208 (605)
+=.-+.-.....|.+++|+.++++..+.+ .|=..|-..|.|++|.++-+.-..-. -.||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11112222335566666666666655432 12234455566666665544322100 112333333333344
Q ss_pred ChhHHHHHHHHH----------HHcCC--------CCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHH
Q 039695 209 QGHEALEMFREF----------NYQSR--------DRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA 270 (605)
Q Consensus 209 ~~~~A~~~~~~m----------~~~~~--------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 270 (605)
+.+.|++.|++. ....+ ...|...|.-...-+...|..+.|..++..... |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 555555544432 11100 123444455555555566777777777765543 334
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---------
Q 039695 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC--------- 341 (605)
Q Consensus 271 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--------- 341 (605)
++...|-.|+.++|.++-++- .|......+...|-..|++.+|..+|.+.+. |...|+.|
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence 555556667777776665543 3444455566666677777777777665432 12222211
Q ss_pred ------hccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH-HhCC----------CCCCchhhHH
Q 039695 342 ------SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA-KSIQ----------VDPDGGPLLW 404 (605)
Q Consensus 342 ------~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----------~~p~~~~~~~ 404 (605)
+...+.-.|-++|++. |... ...+..|-++|.+.+|+++. +.-. ..|+.++...
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~----g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL----GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc----chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1222333444555543 2211 12345677778777777762 2110 2333335555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH---------------------hc-CCCC---------CchHHHHHHHHHhcCChhH
Q 039695 405 GTLLSASRLHGRVDIAVEASNQLI---------------------ES-NQQV---------ANAYVTLSNTYALAGEWEN 453 (605)
Q Consensus 405 ~~ll~~~~~~g~~~~a~~~~~~~~---------------------~~-~p~~---------~~~~~~l~~~y~~~g~~~~ 453 (605)
+.-..-+..+.+++.|..++.... ++ .|.. ......++..+.++|.+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 555555666667776665553322 11 1211 1256678888999998887
Q ss_pred HHHHHH
Q 039695 454 VHSLRS 459 (605)
Q Consensus 454 a~~~~~ 459 (605)
|-+=|.
T Consensus 1164 AtKKfT 1169 (1416)
T KOG3617|consen 1164 ATKKFT 1169 (1416)
T ss_pred HHHHHh
Confidence 766543
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=3.3e-05 Score=69.99 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 039695 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351 (605)
Q Consensus 272 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 351 (605)
+-+|.+.|+++.+....+.+..+. ..|...++.++++..+++.... -+.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 556888888877765554433221 0122356677888888877765 3446788889999999999999999
Q ss_pred HHHHHHHHhcCCCCc-HHHHHHHHHHH-hhcCC--HHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHH
Q 039695 352 QHLDSMYRKYGIIPD-AKHYTCVVDML-GRTGR--LDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426 (605)
Q Consensus 352 ~~~~~m~~~~~~~p~-~~~~~~li~~~-~~~g~--~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 426 (605)
..|+... .+.|+ ...+..+..++ .+.|+ .++|.+++++.. ..|+ +...+..+...+...|++++|+..+++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999885 45665 88888888864 67777 599999999854 4454 378899999999999999999999999
Q ss_pred HHhcCCCCCchHH
Q 039695 427 LIESNQQVANAYV 439 (605)
Q Consensus 427 ~~~~~p~~~~~~~ 439 (605)
+++..|++..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765443
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=4.2e-05 Score=82.10 Aligned_cols=140 Identities=9% Similarity=0.036 Sum_probs=97.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHH
Q 039695 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTC 372 (605)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 372 (605)
++..+-.|.....+.|+.++|..+++...+ ..||. .....+..++.+.+.+++|....++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 456666677777777888888888887777 45654 455566677777788888887777665 34565 666677
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQV-DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
+..++.+.|++++|.++|+++.. .|+ ...+|.++..++...|+.++|...|+++++...+....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 77777788888888888877542 222 35677777778888888888888888887766444444443
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.34 E-value=0.00022 Score=75.78 Aligned_cols=394 Identities=11% Similarity=0.012 Sum_probs=216.0
Q ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 47 ASVHSEILKSGFLSN-TFTLNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGN 122 (605)
Q Consensus 47 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 122 (605)
..++..+....+.++ ...|..|-..|...-+...|.+.|+...+ .+..+|......|+...+++.|..+.-.--+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 334444433333333 24677777888877788888888887744 46778899999999999999998883322221
Q ss_pred CCCCChhhHHH--HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHH-
Q 039695 123 LVWPNEFTFAT--VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS- 199 (605)
Q Consensus 123 g~~pd~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~- 199 (605)
.. .-...++. +--.+...++...+..-|+...+.. +.|...|..|..+|..+|++..|.++|++...-++.+|-.
T Consensus 556 a~-a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 556 AP-AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred ch-HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 10 01112222 2334566778888888888887765 5678889999999999999999999998887644444332
Q ss_pred --HHHHHHHcCChhHHHHHHHHHHHcCC-----CCCChhHHHhHHHhhcccCchhh-------HHHHHHHHHHhCCCCcH
Q 039695 200 --IIVAHAQNAQGHEALEMFREFNYQSR-----DRPNQHMLASVINACASLGRLVS-------GKVAHGVVVRSGCEFND 265 (605)
Q Consensus 200 --li~~~~~~g~~~~A~~~~~~m~~~~~-----~~p~~~t~~~ll~a~~~~~~~~~-------a~~~~~~~~~~g~~~~~ 265 (605)
....-+..|.+.+|+..+........ ..--..++..+...+...|-... +.+.+..........+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 12334567889999888877654210 11112223333333333332222 23333333322222222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCcch--HHHHHHH-HHHcCCh---h---HHHHHHHHHHHcCCCCCHHHHHH
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVT--YTSMIVG-AAKYGLG---R---FSLDLFNEMISRGIKPNDVTFVG 336 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~pd~~t~~~ 336 (605)
..+-.+. +|-..|-... ||.+. +..++.. +-..+.. + -+.+.+-.-.. ...+..+|..
T Consensus 714 ~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyN 780 (1238)
T KOG1127|consen 714 LQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYN 780 (1238)
T ss_pred HHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHH
Confidence 2332222 2233333333 33221 1111111 1111111 1 01111111111 1112333333
Q ss_pred HHHHHhc----cC----cHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHH
Q 039695 337 VLHACSH----SG----LVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGT 406 (605)
Q Consensus 337 ll~a~~~----~g----~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ 406 (605)
|...|.+ .+ +...|...+...+ .+..+ ...|+.|.-+ +..|.+.-|..-|-+-. ..|. ...+|..
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV---~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~N 855 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAV---SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLN 855 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHH---HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheec
Confidence 3332222 11 2234555555443 23333 4555555443 55566666666554322 2232 2667888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
+...|.++.+++.|..+|..+..++|.+...|.....+-...|+.-++..+|..
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888777777777777777777776655
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.32 E-value=0.0015 Score=74.80 Aligned_cols=370 Identities=9% Similarity=-0.044 Sum_probs=231.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhcCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 039695 64 TLNHLINCYVRLKKTQVARQLFDEMLEPNVVS--YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141 (605)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 141 (605)
........|...|++.+|..........+... ...........|++..+..++..+.......+..........+...
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 44455666778899888888777765443222 1112233445678877777776653221111222233334445677
Q ss_pred CChHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHH
Q 039695 142 ADLITGKQIHTHIETFGF------QYN--LVVCSSLVDMYGKCNDVDGARRVFDLMGC----RNV----VSWTSIIVAHA 205 (605)
Q Consensus 142 ~~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~ 205 (605)
|+++++...+..+...-- .+. ......+...+...|++++|...+++... .+. ..++.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 899999988887755311 111 12223344566789999999998877532 221 34455666778
Q ss_pred HcCChhHHHHHHHHHHHc----CCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHH----hCCC---CcHhHHHHHHHH
Q 039695 206 QNAQGHEALEMFREFNYQ----SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR----SGCE---FNDVVASALVDM 274 (605)
Q Consensus 206 ~~g~~~~A~~~~~~m~~~----~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~---~~~~~~~~li~~ 274 (605)
..|++++|...+.+.... |...+...++..+...+...|+++.|...+..... .+.. .....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999998887643 20111223555666677889999999998877655 2322 133455667777
Q ss_pred HHhcCCHHHHHHHHhccCC------C--CcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCHHHH--HHHHHH
Q 039695 275 YAKCGSVNYSDKVFNRISN------P--SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR----GIKPNDVTF--VGVLHA 340 (605)
Q Consensus 275 y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~--~~ll~a 340 (605)
+...|++++|...+.+... + ....+..+...+...|+.++|...+.+.... +..+..... ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 8888999999988887642 1 1223444556778899999999999887542 111111111 112234
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhCCC------CCCchhhHHHHHHHHH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD---AKHYTCVVDMLGRTGRLDEAYKLAKSIQV------DPDGGPLLWGTLLSAS 411 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~~~ll~~~ 411 (605)
+...|+.+.+.+.+...... ..... ...+..+..++...|+.++|...+++... .+.....+...+..++
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45588999999988766321 11111 11245677888899999999998876420 1111134677788889
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
...|+.++|...+.+++++....
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999876443
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.0006 Score=67.31 Aligned_cols=138 Identities=19% Similarity=0.196 Sum_probs=80.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCC
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGR 382 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 382 (605)
.+...|..++|+..++.+... .||. .........+...++..+|.+.++.++ ...|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence 344556666677776666653 3333 333334445566666666666666664 34555 4445556666666677
Q ss_pred HHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 383 ~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
+.+|+.+++........++..|..|..+|...|+..++... ....|...|+|++|........
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 66666666654322222366666666666666666555433 3345566667777777666665
Q ss_pred hC
Q 039695 463 RT 464 (605)
Q Consensus 463 ~~ 464 (605)
++
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 54
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00015 Score=79.53 Aligned_cols=225 Identities=11% Similarity=0.120 Sum_probs=165.3
Q ss_pred ChhHHHhHHHhhcccCchhhHHHHHHHHHHhC-C---CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-CC-cchHHHH
Q 039695 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSG-C---EFNDVVASALVDMYAKCGSVNYSDKVFNRISN-PS-VVTYTSM 302 (605)
Q Consensus 229 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 302 (605)
....|..-|.-..+.++++.|+++.+++++.= + +--..+|.+++++-..-|.-+...++|++..+ -| -..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666666677788888888887777631 1 11245788888888778888888999998876 23 3568889
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHhh
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD---AKHYTCVVDMLGR 379 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~ 379 (605)
...|.+.+..++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.+.++. -|. .....-.+++-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999885 3445677888888888988889999999888643 343 5556666777889
Q ss_pred cCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCc-hHHHHHHHHHhcCChhHHH
Q 039695 380 TGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN--QQVAN-AYVTLSNTYALAGEWENVH 455 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~y~~~g~~~~a~ 455 (605)
.|+.+.+..+|+... ..|. ....|+..+..-.++|+.+.++.+|++++.+. |.... .|.-.+..--+.|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 999999999998754 2232 26699999999999999999999999999876 33322 3444444444445555444
Q ss_pred HHH
Q 039695 456 SLR 458 (605)
Q Consensus 456 ~~~ 458 (605)
.+-
T Consensus 1692 ~VK 1694 (1710)
T KOG1070|consen 1692 YVK 1694 (1710)
T ss_pred HHH
Confidence 443
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.4e-06 Score=54.06 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 039695 94 VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE 128 (605)
Q Consensus 94 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 128 (605)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=1.3e-05 Score=68.12 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 362 GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
...|+ ......+...+...|++++|.+.++... ..|+ ++..|..+...+...|+++.|...++++++.+|+++..+.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 44554 4556677788888899999999888753 2343 3778888889999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 440 TLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 440 ~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++.+|...|++++|.+.++...+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998887754
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.26 E-value=0.0022 Score=68.50 Aligned_cols=391 Identities=11% Similarity=0.010 Sum_probs=212.1
Q ss_pred CchHHHHHHHHHHHcCCChhHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 039695 60 SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV-----VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134 (605)
Q Consensus 60 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~l 134 (605)
.+...+....+.|++..+++.|..+.-...+.+. ..|--.--.|...++..+|+.-|+...+..++ |...|..+
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gL 602 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGL 602 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHH
Confidence 3556777888999999999999888444322211 12333333455566777777777776664332 55567777
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---------C-ChhhHHHHHHHH
Q 039695 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---------R-NVVSWTSIIVAH 204 (605)
Q Consensus 135 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---------~-~~~~~~~li~~~ 204 (605)
..+|...|.+..|.++|..+.... +.+....-....+-+..|.+.+|...+..+.. . -..++-.+...+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~ 681 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS 681 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777777777776665432 11222222233344555666666666554421 0 011111122222
Q ss_pred HHcCChhHHHHHHHHH-------HHcC-------------------CC---CCChhHHHhHHHhhcccCch---h---hH
Q 039695 205 AQNAQGHEALEMFREF-------NYQS-------------------RD---RPNQHMLASVINACASLGRL---V---SG 249 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m-------~~~~-------------------~~---~p~~~t~~~ll~a~~~~~~~---~---~a 249 (605)
.-.|-..+|...+++- .... .+ .|+......+..-.-..+.. + .|
T Consensus 682 ~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg 761 (1238)
T KOG1127|consen 682 AITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLG 761 (1238)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHH
Confidence 2222222222222221 1111 01 22222222221112222221 1 01
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHh----cC----CHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHH
Q 039695 250 KVAHGVVVRSGCEFNDVVASALVDMYAK----CG----SVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
-+.+. ....+..+...|..|+.-|.+ +| +...|...+.... ..+..+||.|... ...|++.-|...
T Consensus 762 ~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHC 838 (1238)
T KOG1127|consen 762 YECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHC 838 (1238)
T ss_pred HHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhh
Confidence 11111 111112223344444333332 22 2235666665544 3566788877655 556777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHh-----
Q 039695 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKS----- 392 (605)
Q Consensus 319 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~----- 392 (605)
|-+-... .+-+..+|..+--.|....+++.|...|.... .+.|+ ...|--........|+.-++..+|..
T Consensus 839 fIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 839 FIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 7665554 33466778888777888899999999999774 66775 56665555555667888888888764
Q ss_pred CC--CCCCchhhHHHHHHHHHHHcCChHHHH----------HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 393 IQ--VDPDGGPLLWGTLLSASRLHGRVDIAV----------EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 393 m~--~~p~~~~~~~~~ll~~~~~~g~~~~a~----------~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
+. .-|+ ..-|-.-..-...+|+.++-+ -+.++.+...|+...+|...+......+.+.+|.++..+
T Consensus 915 ~~~gka~~--f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 915 SKEGKAKK--FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred ccccccch--hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 21 1233 444544444455666655443 334555566799888999988888888888888776665
Q ss_pred H
Q 039695 461 M 461 (605)
Q Consensus 461 m 461 (605)
.
T Consensus 993 l 993 (1238)
T KOG1127|consen 993 L 993 (1238)
T ss_pred H
Confidence 4
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0003 Score=69.96 Aligned_cols=347 Identities=12% Similarity=0.038 Sum_probs=199.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCCH
Q 039695 101 AGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN-LVVCSSLVDMYGKCNDV 179 (605)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~ 179 (605)
.+....|+++.|+.+|.+....... |.+.|+.-..++++.|++++|.+=-...++. .|+ ..-|+.+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3456789999999999998876443 8888999999999999999988776666654 455 35788888888889999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCCC--------hhHHHhHHHhhcccC---
Q 039695 180 DGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFN-YQSRDRPN--------QHMLASVINACASLG--- 244 (605)
Q Consensus 180 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~p~--------~~t~~~ll~a~~~~~--- 244 (605)
++|+..|.+=.+ .+...++-+..++.-.. ++.+.|..-. -.+ +.-+ ...|..++...-+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~-l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEK-LANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHH-hhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999987654 34566666666662110 0111111000 000 0111 112222222221110
Q ss_pred ----chhhHHHHHHHHHH--------h-------CCCC------------c----------HhHHHHHHHHHHhcCCHHH
Q 039695 245 ----RLVSGKVAHGVVVR--------S-------GCEF------------N----------DVVASALVDMYAKCGSVNY 283 (605)
Q Consensus 245 ----~~~~a~~~~~~~~~--------~-------g~~~------------~----------~~~~~~li~~y~~~g~~~~ 283 (605)
+.....+.+..+.. . +..| | ..-...|.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00111111111100 0 0000 0 0112344555555556666
Q ss_pred HHHHHhccCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHhccCcHHHHHHHHH
Q 039695 284 SDKVFNRISN--PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP--N----DVTFVGVLHACSHSGLVDEGIQHLD 355 (605)
Q Consensus 284 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~t~~~ll~a~~~~g~~~~a~~~~~ 355 (605)
|.+-++...+ .++.-++....+|...|.+.+....-....+.|-.. | ...+..+-.++.+.++++.+..+|.
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 6666655443 233334445556666666655555555444433211 1 1112223335555666777777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 356 SMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 356 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
+....+ -.|+ .+.+....+++....+... ..|.. ..--..-.+.+.+.|++..|+..|.++++.+|+|
T Consensus 323 kaLte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 323 KALTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHhhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 654432 2222 2233344455555444322 33431 2223333677889999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 435 ANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 435 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+..|...+-+|.+.|.+..|.+--+...+..
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999998777666653
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2e-06 Score=53.42 Aligned_cols=35 Identities=46% Similarity=0.743 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND 331 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 331 (605)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 124
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=8.7e-05 Score=74.32 Aligned_cols=244 Identities=15% Similarity=0.039 Sum_probs=165.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 039695 204 HAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY 283 (605)
Q Consensus 204 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 283 (605)
+.+.|+..+|.-.|+...... +-+...|..+-..-+..++-..|...+...++.. +.+..+.-+|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 456777777777777766553 3355566666666666666667777777666654 4466667777777777777777
Q ss_pred HHHHHhccCC------------CCcchHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHH
Q 039695 284 SDKVFNRISN------------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSHSGLVDEG 350 (605)
Q Consensus 284 A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a 350 (605)
|.+.++.-.. ++...=+. ..+..........++|-++.. .+..+|......|---|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 7777665421 01000000 111222223455667766654 45446666666666667788999999
Q ss_pred HHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039695 351 IQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428 (605)
Q Consensus 351 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 428 (605)
...|+.++ .++|+ ...||-|...++...+.+||+..|++. ..+|. -+.++..|..+|...|.+++|...|-.++
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999886 56786 889999999999999999999999884 46676 25588889999999999999999999988
Q ss_pred hcCCCC-----C-----chHHHHHHHHHhcCChhHHHH
Q 039695 429 ESNQQV-----A-----NAYVTLSNTYALAGEWENVHS 456 (605)
Q Consensus 429 ~~~p~~-----~-----~~~~~l~~~y~~~g~~~~a~~ 456 (605)
.+.+.+ . .+|..|=.++.-.++.|-+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 765431 1 255555555555666554433
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00052 Score=67.72 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=130.1
Q ss_pred CHHHHHHHHhccCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 039695 280 SVNYSDKVFNRISN------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353 (605)
Q Consensus 280 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 353 (605)
++.+++..-+.++. ++...+...+.+.........+..++.+-.+. .-...-|..-+ .....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 45666666666663 44455556665544433333333333322221 11223343333 44567999999999
Q ss_pred HHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039695 354 LDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431 (605)
Q Consensus 354 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 431 (605)
++.+.+. .|+ +.......+.+.+.++.++|.+.++++. ..|+. ...+-.+..++.+.|++.+|+..++.....+
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 9998743 555 7777788899999999999999999864 45653 7788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 432 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
|+++..|..|+.+|...|+..++...+.+.-.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999998877644
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=0.00014 Score=68.58 Aligned_cols=184 Identities=16% Similarity=0.069 Sum_probs=126.7
Q ss_pred CChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc----hH
Q 039695 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE-F-NDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVV----TY 299 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~ 299 (605)
.....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+ |+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777778888999999999999998876421 1 124677889999999999999999999864 3222 35
Q ss_pred HHHHHHHHHc--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHH
Q 039695 300 TSMIVGAAKY--------GLGRFSLDLFNEMISRGIKPNDV-TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY 370 (605)
Q Consensus 300 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 370 (605)
..+..++.+. |+.++|.+.|++.... .|+.. ....+.... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHH---------HHHH
Confidence 5555566554 7789999999999874 44432 221111110 00 0000 0112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039695 371 TCVVDMLGRTGRLDEAYKLAKSIQ-VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432 (605)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 432 (605)
..+...|.+.|++++|...++... ..|+ .....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 346677889999999999988753 2222 1246888999999999999999998888776555
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0011 Score=72.37 Aligned_cols=167 Identities=11% Similarity=-0.010 Sum_probs=93.9
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcC
Q 039695 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNA 208 (605)
Q Consensus 129 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 208 (605)
..+..|+..+...+++++|.++.+...+.. +.....|-.+...|.+.++.+++..+ . ++.......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~-----------~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N-----------LIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-----------hhhhccccc
Confidence 355556666666666666666666544432 22222333333355555554444433 1 222222333
Q ss_pred ChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 039695 209 QGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288 (605)
Q Consensus 209 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 288 (605)
++.-+..+...|... .-+...+..+..+|.++|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus 98 ~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 332222233333332 2344456666667777777777777777777766 56777777777777777 777777776
Q ss_pred hccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 289 NRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325 (605)
Q Consensus 289 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 325 (605)
.+. +.-|...+++.++.++|.++...
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 643 33366666777777777777763
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.0026 Score=66.49 Aligned_cols=157 Identities=8% Similarity=0.003 Sum_probs=103.1
Q ss_pred HHHhcCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh---
Q 039695 83 QLFDEMLEPNVVSYTSLMA--GYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF--- 157 (605)
Q Consensus 83 ~~f~~m~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--- 157 (605)
+-|-.+..-|..+-.+++. .|..-|+.+.|.+-.+..+. ...|..+.+.|.+..+++-|+-.+..|...
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3344445567777777764 56778999999988877654 356888999999988888887776655321
Q ss_pred -----C-CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChh
Q 039695 158 -----G-FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQH 231 (605)
Q Consensus 158 -----g-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 231 (605)
. -.++ ..-....-.-...|.+++|+.+|.+.+. |..|=..|...|.+++|+++-+.-.... . ..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiH-L---r~ 859 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIH-L---RN 859 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcccee-h---hh
Confidence 1 1221 2222333344577999999999999765 3445567778999999999876432222 2 23
Q ss_pred HHHhHHHhhcccCchhhHHHHHHH
Q 039695 232 MLASVINACASLGRLVSGKVAHGV 255 (605)
Q Consensus 232 t~~~ll~a~~~~~~~~~a~~~~~~ 255 (605)
||-.-..-+...++.+.|.+.++.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHh
Confidence 444444445556677777776653
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.8e-06 Score=51.69 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039695 93 VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126 (605)
Q Consensus 93 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 126 (605)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3688999999999999999999999999888887
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=9.9e-05 Score=73.40 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSA 410 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~ 410 (605)
....+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.. ..|. +...+......
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34456677777889999999999999643 365 44457888888899999999988754 3343 26677777788
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 411 SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 411 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
|...++++.|+.+++++.+..|.+..+|..|+.+|.+.|++++|...++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999998775
No 131
>PLN02789 farnesyltranstransferase
Probab=98.09 E-value=0.0012 Score=64.41 Aligned_cols=203 Identities=11% Similarity=0.031 Sum_probs=116.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCChh-HHHhHHHhhcccC-chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 039695 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQH-MLASVINACASLG-RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG 279 (605)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 279 (605)
..+...++.++|+.++.++... .|+.. .+..--.++...+ .++++...+..+.+.. +.+..+++...-.+.+.|
T Consensus 45 a~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3345556667777777766653 24332 2332223333444 4566666666666654 334445554444444455
Q ss_pred CH--HHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---Cc----H
Q 039695 280 SV--NYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS---GL----V 347 (605)
Q Consensus 280 ~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~ 347 (605)
.. +++...++++.+ .|..+|+-..-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 42 556666666653 45567777777777888888888888888886544 444454444444333 22 2
Q ss_pred HHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhc----CCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHH
Q 039695 348 DEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRT----GRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRL 413 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~----g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~ 413 (605)
++..++...++ .+.|+ ...|+.+..+|... ++..+|.+++.+.. ..|+ +......|+..+..
T Consensus 200 e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45566665554 33554 66777777777663 34466777776643 2332 25566777777764
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.016 Score=58.05 Aligned_cols=119 Identities=10% Similarity=0.038 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--chhhHHHHHHHHHHHcCChHHHHHHH
Q 039695 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD--GGPLLWGTLLSASRLHGRVDIAVEAS 424 (605)
Q Consensus 347 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~ 424 (605)
.+....+++++.....+.|+. +|.++++.-.|..-++.|..+|.+....+- ....+.++++.-++ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 344455555555444555553 456667777777777777777776542211 01455666666544 46667777777
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 425 NQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 425 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
+--++..++++..-...++-+...++-..+..+|++....++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 7777777776665556666677777777777777777766443
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00018 Score=65.18 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=79.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 039695 272 VDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348 (605)
Q Consensus 272 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 348 (605)
-..|...|+-+.+..+...... .|....+..+....++|++.+|+..|++.... -++|..+|+.+.-+|.+.|+++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 3334444444444444443321 22233334555555666666666666665543 3445556666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHH
Q 039695 349 EGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426 (605)
Q Consensus 349 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 426 (605)
+|..-|.+.. .+.|+ ...++.|.-.|.-.|+++.|..++......|..+..+-..|.-+....|++++|+.+..+
T Consensus 152 ~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666665553 23333 444555555555566666666666554333332355555555555666666666555443
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7.3e-06 Score=50.41 Aligned_cols=33 Identities=39% Similarity=0.642 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 329 (605)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.05 E-value=0.00079 Score=72.52 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=112.1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 039695 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PS-VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND-VTFVG 336 (605)
Q Consensus 261 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ 336 (605)
.+.++..+..|.......|..++|+.+++...+ || ...+..+...+.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999998875 44 456777888999999999999999999884 4554 45566
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCchhhHHHHHHH
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ--VDPDGGPLLWGTLLS 409 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~~~ll~ 409 (605)
+..++...|.+++|..+|+++.. -.|+ ...+..+..++...|+.++|...|++.. ..|. ...|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~--~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG--ARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc--hHHHHHHHH
Confidence 66778889999999999999964 2444 7888889999999999999999998853 2333 455555443
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0054 Score=55.87 Aligned_cols=176 Identities=14% Similarity=0.052 Sum_probs=108.6
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
.+.+.......+......-...|.+.|++++|.+....... ......=...+.+..+.+-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 33444433344444444445667788888888888776332 222222234455666777888888888762 2556
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 039695 333 TFVGVLHACSH----SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408 (605)
Q Consensus 333 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll 408 (605)
|.+.|..++.+ .+.+..|.-+|++|.. ...|+..+.+-...+....|++++|..+++....+...++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66666666643 3457778888888853 25677777777777777788888888887775423222356666666
Q ss_pred HHHHHcCCh-HHHHHHHHHHHhcCCCCC
Q 039695 409 SASRLHGRV-DIAVEASNQLIESNQQVA 435 (605)
Q Consensus 409 ~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 435 (605)
.+....|.. +--.+...++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 665555554 444566666666677654
No 137
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00084 Score=60.98 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=73.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCC
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 382 (605)
-..+...|+.+....+..+.... ..-|............+.|++.+|...+.+... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 34444455555555554443321 111222333344455555555555555555531 223345555555555555555
Q ss_pred HHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 039695 383 LDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457 (605)
Q Consensus 383 ~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 457 (605)
+++|..-|.+. ...|+ .+...+.|.-.+.-.|+.+.|+.++.......+.++.+-..|.-.-...|++++|..+
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555442 22222 1445555555555555555555555555555555555555555555555555555544
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.00023 Score=70.83 Aligned_cols=129 Identities=6% Similarity=-0.003 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 345 (605)
....+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++.... .+-|......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344566677777889999999999998877777777888888888888999999988864 2235555555566678889
Q ss_pred cHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 039695 346 LVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398 (605)
Q Consensus 346 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 398 (605)
+.+.|..+.+++. ...|+ ..+|..|...|.+.|++++|+-.++.+|..+.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999999886 56776 67899999999999999999999999885543
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.001 Score=59.99 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHhccCC--------CCcc-hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCcH
Q 039695 278 CGSVNYSDKVFNRISN--------PSVV-TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL-HACSHSGLV 347 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~ 347 (605)
..+.++..+++..+.. ++.. .|..++-+....|+.+-|...++++... + |.+.-...+= .-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3466777777776652 2221 2334455556677778888888877765 2 4332221111 112345777
Q ss_pred HHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCchhhHHHHHHHHHHHcCChHHHHHHH
Q 039695 348 DEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ--VDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~ 424 (605)
++|.++++.+..+ .|+ ..+|--=+.+.-..|+.-+|++-+.... +-.| ...|.-|...|...|+++.|.-.+
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888877644 343 5556555555666666667766655432 2345 778888888888888888888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcC---ChhHHHHHHHHHHhCC
Q 039695 425 NQLIESNQQVANAYVTLSNTYALAG---EWENVHSLRSEMKRTG 465 (605)
Q Consensus 425 ~~~~~~~p~~~~~~~~l~~~y~~~g---~~~~a~~~~~~m~~~~ 465 (605)
++++=..|.++..+..+++.+.-.| +.+-|.+.+.+..+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8888888888777777777766555 4455666666665543
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=0.00015 Score=56.59 Aligned_cols=94 Identities=21% Similarity=0.260 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 448 (605)
+..+...+...|++++|.+.++... ..|+ +...|..+...+...|+++.|.+.+++.++..|.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4456677788899999999888753 3343 2467788888888899999999999999999988888888999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 039695 449 GEWENVHSLRSEMKRT 464 (605)
Q Consensus 449 g~~~~a~~~~~~m~~~ 464 (605)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999988877653
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00039 Score=58.92 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=86.7
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 039695 318 LFNEMISRGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ- 394 (605)
Q Consensus 318 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 394 (605)
.|++... ..|+ ......+...+...|++++|.+.++.+.. ..| +...+..+...|.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544 3443 34455666777888999999999988853 234 57888888999999999999999888753
Q ss_pred CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 395 ~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
..|+ +...|..+...+...|+.+.|...++++++..|++..
T Consensus 80 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPD-DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3343 2678888889999999999999999999999998764
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=1.8e-05 Score=47.39 Aligned_cols=31 Identities=42% Similarity=0.653 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 94 VSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124 (605)
Q Consensus 94 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 124 (605)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2e-05 Score=47.20 Aligned_cols=31 Identities=48% Similarity=0.712 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 327 (605)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888899999988888764
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.85 E-value=0.0035 Score=68.46 Aligned_cols=219 Identities=14% Similarity=0.053 Sum_probs=139.3
Q ss_pred hCCCC-chHHHHHHHHHHHcCCChhHHHHHHhcCCC--CChh-hHHHHHHHHHhcCChhHHHHH----------------
Q 039695 56 SGFLS-NTFTLNHLINCYVRLKKTQVARQLFDEMLE--PNVV-SYTSLMAGYINMGQPQIALLL---------------- 115 (605)
Q Consensus 56 ~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~a~~~---------------- 115 (605)
..+.| +...+..|++.|...+++++|.++.+...+ |+.. .|-.+...+.+.++..++..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHH
Confidence 34433 456777888888888888888888775522 3322 222222245555555554444
Q ss_pred --HHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 039695 116 --FQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN 193 (605)
Q Consensus 116 --~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~ 193 (605)
...|... .-+...+-.+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|++++.+.
T Consensus 104 ~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA---- 175 (906)
T PRK14720 104 HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA---- 175 (906)
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH----
Confidence 1122221 1122566677777888889999999999988887 66788888888888888 888888888775
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh-CCCCcHhHHHHHH
Q 039695 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALV 272 (605)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li 272 (605)
+..|...+++.++.+++.++.... |+... .-.++...+..+ |..--+.++-.|-
T Consensus 176 -------V~~~i~~kq~~~~~e~W~k~~~~~---~~d~d---------------~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 176 -------IYRFIKKKQYVGIEEIWSKLVHYN---SDDFD---------------FFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -------HHHHHhhhcchHHHHHHHHHHhcC---cccch---------------HHHHHHHHHHhhhccchhHHHHHHHH
Confidence 344777778888888888887643 33221 112222223222 3333445566677
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHH
Q 039695 273 DMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAA 307 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 307 (605)
+.|-+..+++++..+|+.+.+ .|.....-++..|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 778888888888888888775 34445555666665
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.0005 Score=59.06 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=57.3
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCch--hhHHHHHHHHHHHcCChHH
Q 039695 344 SGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD-PDGG--PLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 344 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~--~~~~~~ll~~~~~~g~~~~ 419 (605)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+..... |++. ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555544322221 1222333445555556666666665554311 2211 1233345555556666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
|+..++.. ...+-.+..+..++++|.+.|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665442 22222334555666677777777777666654
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=6e-05 Score=55.27 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG-EWENVHSLRSEMKRT 464 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~~ 464 (605)
+.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|.+.| ++++|.+.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 7789999999999999999999999999999999999999999999999 799999999887653
No 147
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.022 Score=55.50 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=74.9
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 039695 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351 (605)
Q Consensus 272 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 351 (605)
+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-..+... +-+++-|...+.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44455678888888888888778888888888888888888766665332 113466777788888888888887
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 039695 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 352 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (605)
.+...+ + +..-+.+|.++|.+.+|.+..-+.
T Consensus 258 ~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 776653 1 134567788888888887775554
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0021 Score=55.16 Aligned_cols=126 Identities=16% Similarity=0.086 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKP--NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVV 374 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li 374 (605)
|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+... ...|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 3777778878888887752211 1233344556677788888888888888643 22232 22344567
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 039695 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 427 (605)
..+...|++++|+..++..+.. ...+..+..+...+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888999998888776522 223557777888888899999998888775
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0073 Score=55.09 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=66.7
Q ss_pred HHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 039695 273 DMYAKCGSVNYSDKVFNRISNP-SVVTYTSMIVGAAK----YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 347 (605)
..+.|..+++-|++.+++|.+- +..+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3344555666666666666653 33455555555543 34466777777777664 667777777777777777888
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 039695 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (605)
++|..+++....+.. -++.+...++-.--..|...+
T Consensus 224 eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKDA--KDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCChH
Confidence 888887777764432 234444444444444555443
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.75 E-value=0.09 Score=56.18 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 039695 403 LWGTLLSASRLHGRVD---IAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~ 470 (605)
+-+.|+..+++.++.. +|+-+++..+...|.|...-..|+.+|+-.|-...|.++++.+.-+.+..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4567788899888765 6777788888889999888889999999999999999999998777776543
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00049 Score=56.72 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc--hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHH
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV---ANAYVTLS 442 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 442 (605)
.+..++..+.+.|++++|.+.++.+. ..|+. ....+..+..++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555666666666666665542 12220 02344556666666666777777777666665554 33566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 039695 443 NTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 443 ~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.+|.+.|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66667777777777776666553
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.012 Score=53.36 Aligned_cols=165 Identities=13% Similarity=0.173 Sum_probs=111.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCcchHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 039695 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMI---VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347 (605)
Q Consensus 271 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 347 (605)
+.-+..-+|+.+.|...++.+...=+.++.... .-+-..|++++|+++++.+.+.. +-|.+++-.=+...-..|.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 333444556666666666665431122222111 12345688899999999988864 44666776656566666777
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcC---ChHHHHHH
Q 039695 348 DEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHG---RVDIAVEA 423 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g---~~~~a~~~ 423 (605)
-+|++-+....+. +.-|.+.|.-+.+.|...|+++.|.--++++. ..|- ++..+..+...+...| +.+.+.+.
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7888777777554 46678899999999999999999999998864 3443 3666666666654444 57789999
Q ss_pred HHHHHhcCCCCCchHH
Q 039695 424 SNQLIESNQQVANAYV 439 (605)
Q Consensus 424 ~~~~~~~~p~~~~~~~ 439 (605)
|++.+++.|.+...+.
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999996654433
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=97.65 E-value=0.00049 Score=58.45 Aligned_cols=102 Identities=14% Similarity=0.015 Sum_probs=82.9
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 362 GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
|+.++ ....-...--+-..|++++|..+|+-+..-...+..-|..|..++...++++.|+..|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55554 23333344445678999999999987542211237789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 039695 441 LSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 441 l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.+.+|...|+.+.|...|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00014 Score=52.46 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+...+...|++++|+..|+++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566777788888888888888888877788888888888888888888887776543
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=6.8e-05 Score=57.49 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHhCC-CCCC-chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 039695 380 TGRLDEAYKLAKSIQ-VDPD-GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~-~~p~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 457 (605)
.|++++|+.+++++. ..|+ .+...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356666666666543 2221 1244555577777777777777777777 556666656666677788888888888877
Q ss_pred HHH
Q 039695 458 RSE 460 (605)
Q Consensus 458 ~~~ 460 (605)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.00046 Score=68.90 Aligned_cols=107 Identities=11% Similarity=-0.033 Sum_probs=86.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcC
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g 415 (605)
.......|++++|.+.|.++++ +.|+ ...|..+..+|.+.|++++|+..+++.. ..|+ +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 4556678999999999998863 4565 7788888999999999999999998753 4453 3678888999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039695 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 448 (605)
++++|+..|+++++++|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987776665554443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.002 Score=52.97 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc--hhhHHHHHH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG--GPLLWGTLL 408 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~--~~~~~~~ll 408 (605)
++..+...+...|++++|...|..+.....-.| ....+..+..++.+.|++++|.+.++.+. ..|+. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777776654321111 13455567777777788888877777643 22331 134677777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 409 SASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
.++...|+.+.|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888888888888888888888888775443
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.00097 Score=61.83 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=73.5
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
..+.+++.+|...|.+.+ .+.|+ ..-|..-..+|.+.|.++.|++-.+.. ...|. ...+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 345678888888888775 56765 666666678888888888888777663 34444 3568899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHH
Q 039695 419 IAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
+|++.|+++++++|++......|-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999999998875444443
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0015 Score=57.79 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (605)
...|..+...+...|++++|+..|++.. ..|+ ....+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777777888899999999988742 2222 124588999999999999999999999999999998888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 039695 444 TYA-------LAGEWENVHSLRSEM 461 (605)
Q Consensus 444 ~y~-------~~g~~~~a~~~~~~m 461 (605)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888666666544
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0016 Score=65.06 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=76.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcC
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTG 381 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 381 (605)
...+...|++++|+.+|++.++... -+...|..+..++...|++++|...++.++ .+.|+ ...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHhC
Confidence 4556778999999999999998532 356778888889999999999999999886 45665 778889999999999
Q ss_pred CHHHHHHHHHhC-CCCCC
Q 039695 382 RLDEAYKLAKSI-QVDPD 398 (605)
Q Consensus 382 ~~~~A~~~~~~m-~~~p~ 398 (605)
++++|+..|++. ...|+
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999884 34555
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00041 Score=50.07 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=50.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
+...+.+.|++++|.+.|+++. ..|+ +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788999999999998864 3443 578999999999999999999999999999999864
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.0023 Score=56.83 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (605)
...+..+...+.+.|++++|...|++.. ..|+ .....|..+...+...|+++.|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456677777778888888888887643 2222 124578888888999999999999999999999988888888888
Q ss_pred HHHhcCC
Q 039695 444 TYALAGE 450 (605)
Q Consensus 444 ~y~~~g~ 450 (605)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00026 Score=51.63 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=44.3
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...|++++|++.++++++..|++..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888889999999888888888888888999999999999988887766543
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0051 Score=54.53 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHH
Q 039695 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN--DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTC 372 (605)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 372 (605)
...+..+...+...|++++|...|++.......++ ...+..+...+.+.|++++|...+.+... +.|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 34556666667777777777777777765433222 24566666666777777777777776642 3343 445555
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
+..+|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A--------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA--------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH--------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 566666666555544322211 012577888888888888876 5555555555544
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.33 E-value=0.00081 Score=49.82 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=51.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
...+...++++.|.++++++++.+|+++..+...+.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998886554
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.025 Score=57.88 Aligned_cols=199 Identities=17% Similarity=0.127 Sum_probs=107.6
Q ss_pred hHHHHHHHHhccCChHHHH--HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc
Q 039695 130 TFATVIKACSMLADLITGK--QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207 (605)
Q Consensus 130 t~~~ll~a~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 207 (605)
.|+..=+||.+..+..--+ .-++++.++|-.|+... +.+.++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 3444555665555544322 22345566675566543 44566777888888888876 4
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039695 208 AQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKV 287 (605)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 287 (605)
|.-..|+++|.+|+--. ...-+...|..++-+.+...-.+ ..-++.--.+-..++...|+.++|..+
T Consensus 659 G~enRAlEmyTDlRMFD-----------~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMFD-----------YAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred CchhhHHHHHHHHHHHH-----------HHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55556666665554211 11122223333332222221111 011111112334455556666666544
Q ss_pred HhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcH
Q 039695 288 FNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367 (605)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 367 (605)
...+|-.+-+.++-+++-. .+..+...+...+-+...+..|-++|..|- +
T Consensus 726 ------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-D------- 775 (1081)
T KOG1538|consen 726 ------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMG-D------- 775 (1081)
T ss_pred ------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhc-c-------
Confidence 2344545555555444432 234455555555556677778888888773 1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 039695 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQ 394 (605)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (605)
..+++++....++|.+|..+.++.|
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCc
Confidence 2457888889999999999998877
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.004 Score=48.89 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 039695 95 SYTSLMAGYINMGQPQIALLLFQKMLGNLV-WPNEFTFATVIKACSMLA--------DLITGKQIHTHIETFGFQYNLVV 165 (605)
Q Consensus 95 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 165 (605)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-..+.+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666777999999999999999999 899999999999887653 23456788899999999999999
Q ss_pred HHHHHHHHHh
Q 039695 166 CSSLVDMYGK 175 (605)
Q Consensus 166 ~~~Li~~y~~ 175 (605)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0071 Score=58.51 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=157.5
Q ss_pred HHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-ChhHHHhHHHhhcccCch
Q 039695 171 DMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP-NQHMLASVINACASLGRL 246 (605)
Q Consensus 171 ~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~ 246 (605)
+.+.+..++..|+..+....+ .++.-|..-...+..-|++++|+--.+.-.+ ++| ...+....-.++...+..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhHHH
Confidence 445555666666666655433 2344455566666666777766655544332 222 122333333344444444
Q ss_pred hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCcchHHHH-HHHHHHcCChhHHHHHHH
Q 039695 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-----PSVVTYTSM-IVGAAKYGLGRFSLDLFN 320 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~~ 320 (605)
.+|.+.+.. ...+ ....|...++.... |...+|..+ ...+...|+.++|...-.
T Consensus 134 i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 444433330 0000 11122222222221 222334333 245666788888887766
Q ss_pred HHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhcCCCCcHHHH-------------HHHHHHHhhcCCHHH
Q 039695 321 EMISRGIKPNDVTFVGVLH--ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHY-------------TCVVDMLGRTGRLDE 385 (605)
Q Consensus 321 ~m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-------------~~li~~~~~~g~~~~ 385 (605)
...+. .+. ..+...++ ++-..++.+.|...|++.+ .+.|+...- .-=.+...+.|++.+
T Consensus 194 ~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 194 DILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 65543 111 11222222 2334567788888887664 556653221 112344567899999
Q ss_pred HHHHHHhC-CCCCC---chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 386 AYKLAKSI-QVDPD---GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 386 A~~~~~~m-~~~p~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
|.+.+.+. ...|+ .+...|.....+..+.|+.++|+.--+.+++++|.-..+|..-++++...++|++|.+-+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999874 34443 125577778888899999999999999999999998889999999999999999999999988
Q ss_pred HhCCC
Q 039695 462 KRTGI 466 (605)
Q Consensus 462 ~~~~~ 466 (605)
.+...
T Consensus 348 ~q~~~ 352 (486)
T KOG0550|consen 348 MQLEK 352 (486)
T ss_pred Hhhcc
Confidence 76544
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.28 E-value=0.0029 Score=48.98 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=42.1
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
+...|++++|...++...+ ..|+ ...+..+...+...|++++|.+.++... ..|. +..+|..+...+...|+.+
T Consensus 10 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 10 YYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHhHH
Confidence 3334444444444444421 1221 2334444445555555555555554422 1222 1345555555666666666
Q ss_pred HHHHHHHHHHhcCC
Q 039695 419 IAVEASNQLIESNQ 432 (605)
Q Consensus 419 ~a~~~~~~~~~~~p 432 (605)
.|...+.++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666655544
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0078 Score=57.98 Aligned_cols=142 Identities=12% Similarity=0.071 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039695 94 VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA-CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172 (605)
Q Consensus 94 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 172 (605)
.+|..+|+..-+.+..+.|..+|.+.++.+. .+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4788899999888889999999999986532 123333332222 33357778899999999987 57788999999999
Q ss_pred HHhCCCHHHHHHHHhhcCC--C----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhh
Q 039695 173 YGKCNDVDGARRVFDLMGC--R----NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 240 (605)
+.+.|+.+.|+.+|++... + ....|...+.-=.+.|+.+.+.++..++.+. .|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 9999999999999999865 2 3358999999999999999999999998874 45555555555544
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.082 Score=49.62 Aligned_cols=173 Identities=9% Similarity=0.028 Sum_probs=101.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CCcc-hH---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 039695 271 LVDMYAKCGSVNYSDKVFNRISN--PSVV-TY---TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH- 343 (605)
Q Consensus 271 li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~- 343 (605)
....+.+.|++++|.+.|+.+.. |+.. .- -.+..+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567888888888887764 3221 11 23456677788888888888888774222222233333333221
Q ss_pred -c---------------Cc---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHH
Q 039695 344 -S---------------GL---VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLW 404 (605)
Q Consensus 344 -~---------------g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 404 (605)
. .+ ...|...|+. +++.|-...-..+|...+..+...- ..--
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~l---a~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRL---AKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHH---HHHH
Confidence 0 01 1122233333 3333333444455554443332110 1111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVA---NAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 405 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
-.+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1345568889999999999999999877654 467788999999999999999877654
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0012 Score=61.21 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=80.2
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 039695 375 DMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 453 (605)
+-+.+.+++++|+..|.+ +...|. +++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 446788999999999987 445554 378888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 039695 454 VHSLRSEMKRTGI 466 (605)
Q Consensus 454 a~~~~~~m~~~~~ 466 (605)
|.+.|++..+...
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999988766443
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.0037 Score=62.66 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCC-CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 039695 57 GFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE-PN-----VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT 130 (605)
Q Consensus 57 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t 130 (605)
+.+.+......+++......+++.+..++-+... |+ ..+..++|+.|...|..++++.+++.=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445555666666666666677777777666522 11 23445778888888888888888777777788888888
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 039695 131 FATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKC 176 (605)
Q Consensus 131 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 176 (605)
|+.||..+.+.|++..|.++...|...+...+..|+.--+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888887777777666555555555444444444
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.19 E-value=0.0035 Score=55.62 Aligned_cols=89 Identities=16% Similarity=0.283 Sum_probs=68.5
Q ss_pred CCCcchHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 039695 293 NPSVVTYTSMIVGAAK-----YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS----------------GLVDEGI 351 (605)
Q Consensus 293 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----------------g~~~~a~ 351 (605)
.+|-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4556666666666654 366666777778888888888888888888876542 2345689
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCC
Q 039695 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382 (605)
Q Consensus 352 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 382 (605)
+++++| +.+|+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 999999 888999999999999999988765
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0035 Score=58.58 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=88.7
Q ss_pred CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCCchH
Q 039695 364 IP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHG---RVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 364 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
.| |.+.|-.|...|.+.|++..|..-|.+.. ..|+ ++..+..+..++.... ...++..+++++++.+|.++.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45 59999999999999999999999998743 3444 3777777777765443 35689999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEP 470 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~ 470 (605)
..|...+...|++.+|...|+.|.+.....+|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999987664443
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.025 Score=54.53 Aligned_cols=135 Identities=8% Similarity=0.058 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 376 (605)
+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+..++.+ ..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 56667777777777888888888887532 2233333333333 333577778999999998765 3456778888999
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCC-c-hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 377 LGRTGRLDEAYKLAKSIQ-VDPD-G-GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~-~~p~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
+.+.|+.+.|..+|++.. .-|. . ....|...+.--.+.|+.+....+.+++.+.-|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999853 2233 1 145999999999999999999999999999888753
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.16 E-value=0.0018 Score=49.48 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=40.9
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHH
Q 039695 309 YGLGRFSLDLFNEMISRGI-KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 386 (605)
+|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.. ...|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666665422 123334444566666666666666666541 22222 23333345556666666666
Q ss_pred HHHHHh
Q 039695 387 YKLAKS 392 (605)
Q Consensus 387 ~~~~~~ 392 (605)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.15 E-value=0.016 Score=60.74 Aligned_cols=65 Identities=23% Similarity=0.255 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+..|.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|...+++....+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56788887777788999999999999999998 467899999999999999999999998877655
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.13 E-value=0.022 Score=59.68 Aligned_cols=140 Identities=15% Similarity=0.060 Sum_probs=97.4
Q ss_pred CCCcchHHHHHHHHHHc--C---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHH
Q 039695 293 NPSVVTYTSMIVGAAKY--G---LGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHS--------GLVDEGIQHLDSMY 358 (605)
Q Consensus 293 ~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 358 (605)
..|...|...+.|.... + ...+|..+|++..+ ..||- ..+..+..++... ..+..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 46778888888875442 2 36689999999988 45653 3444333322211 12233344333322
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.......+...|..+.-.....|++++|...+++.. ..|+ ...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 111123346778888777777899999999999854 5676 889999999999999999999999999999999874
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.29 Score=47.34 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhc-CCCCc--HHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIK-----PNDV-TFVGVLHACSHSGLVDEGIQHLDSMYRKY-GIIPD--AKH 369 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 369 (605)
+..+...+.+.|++++|.++|++....-.. ++.. .|...+-++...|++..|...++...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 334566778888888888888887764222 2222 23333445666788999998888874221 22223 445
Q ss_pred HHHHHHHHhh--cCCHHHHHHHHHhCC
Q 039695 370 YTCVVDMLGR--TGRLDEAYKLAKSIQ 394 (605)
Q Consensus 370 ~~~li~~~~~--~g~~~~A~~~~~~m~ 394 (605)
...|++++-. ...+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 5666777743 456888888888876
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.011 Score=52.12 Aligned_cols=99 Identities=13% Similarity=-0.040 Sum_probs=45.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHH
Q 039695 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASR 412 (605)
Q Consensus 335 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~ 412 (605)
..+...+...|++++|...|+.......-.+ ...++..+..+|...|++++|++.+++.. ..|+ ....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3333344444555555555554432110000 12344455555555555555555554432 1222 1333444444444
Q ss_pred -------HcCChH-------HHHHHHHHHHhcCCCC
Q 039695 413 -------LHGRVD-------IAVEASNQLIESNQQV 434 (605)
Q Consensus 413 -------~~g~~~-------~a~~~~~~~~~~~p~~ 434 (605)
..|+++ +|...+++.++.+|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 555554 5556666677777754
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.05 E-value=0.00042 Score=42.18 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 039695 424 SNQLIESNQQVANAYVTLSNTYALAGEWENVH 455 (605)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 455 (605)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.03 E-value=0.01 Score=59.55 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=65.1
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CChhhHHH
Q 039695 126 PNEFTFATVIKACSMLADLITGKQIHTHIETF--GFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC----RNVVSWTS 199 (605)
Q Consensus 126 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~ 199 (605)
.+...+..+++.+....+++.++.++-..... ....-..|..++|..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555666666666666666655555443 1112233445666666666666666666554333 56666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhccc
Q 039695 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243 (605)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~ 243 (605)
|+..+.+.|++..|.++...|...+ ...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 6666666666666666666655555 455555555555555443
No 184
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.061 Score=52.98 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-C--cc----hHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 270 ALVDMYAKCGSVNYSDKVFNRISNP-S--VV----TYTSMIVGAAK---YGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 270 ~li~~y~~~g~~~~A~~~~~~~~~~-~--~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
.|+-.|....+++...++++.+... + +. .--...-++.+ .|+.++|+.++..+......+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444588888889999998888753 1 11 11123445556 7899999999999777667778888877766
Q ss_pred HHhc---------cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHH----HHHHHH---HhC-----CCCCC
Q 039695 340 ACSH---------SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD----EAYKLA---KSI-----QVDPD 398 (605)
Q Consensus 340 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-----~~~p~ 398 (605)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|... +..++- ..+ ...+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 23477788887744 467777544433444444444322 222222 111 12233
Q ss_pred chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 399 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
.+...+.+++.++.-.|+.+.|.++++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2256778899999999999999999999999987653
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.02 E-value=0.01 Score=46.64 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhcCCCCcHHHH
Q 039695 300 TSMIVGAAKYGLGRFSLDLFNEMISRGI-KPNDVTFVGVLHACSHSG--------LVDEGIQHLDSMYRKYGIIPDAKHY 370 (605)
Q Consensus 300 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 370 (605)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+|+.|. ..+++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3456666677999999999999999999 899999999998876643 2445677888885 44899999999
Q ss_pred HHHHHHHhh
Q 039695 371 TCVVDMLGR 379 (605)
Q Consensus 371 ~~li~~~~~ 379 (605)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887754
No 186
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.01 E-value=0.39 Score=46.90 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~ 411 (605)
.+.+..+.-|...|....|.++-. ++++ |+..-|-..+.+|+..++|++-.++... +.+ |.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKs--PIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKS--PIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCC--CCChHHHHHHH
Confidence 345555666777888888777644 4455 8888899999999999999998887654 334 78899999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
...|+..+|.....+ ..+..-+.+|.++|+|.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888776 12256788999999999998765443
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.00 E-value=0.015 Score=51.84 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=73.5
Q ss_pred CCChhHHHhHHHhhcc-----cCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHH
Q 039695 227 RPNQHMLASVINACAS-----LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTS 301 (605)
Q Consensus 227 ~p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 301 (605)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -. ..+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~-----------n~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PR-----------NFFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cc-----------cHHHH
Confidence 3455666666665543 35666667777888889999999999999988765 3221 11 11222
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 346 (605)
+..-| ..+.+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 22222 23456789999999999999999999999999977664
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.97 E-value=0.031 Score=47.43 Aligned_cols=87 Identities=8% Similarity=-0.106 Sum_probs=46.3
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
+...|++++|..+|+.+. -+.|. ..-|..|.-++-..|++++|++.|.... ..|+ ++..+-.+..++...|+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHH
Confidence 344555555555555553 23443 4444455555555566666666655421 2232 2555555666666666666
Q ss_pred HHHHHHHHHHhcC
Q 039695 419 IAVEASNQLIESN 431 (605)
Q Consensus 419 ~a~~~~~~~~~~~ 431 (605)
.|++.|+.++..-
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666543
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.96 E-value=0.002 Score=46.99 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHG-RVDIAVEASNQLIESNQ 432 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 432 (605)
+...|..+...+.+.|++++|+..|++. ...|+ ++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567777888888889999998888773 34554 4778889999999999 79999999999999887
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.96 E-value=0.058 Score=52.16 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=27.5
Q ss_pred HHHHHHHhC-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 168 SLVDMYGKC-NDVDGARRVFDLMGC-----RN----VVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223 (605)
Q Consensus 168 ~Li~~y~~~-g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 223 (605)
.+...|-.. |+++.|.+.|++..+ .+ ...+..+...+.+.|++++|+++|++....
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344445555 556555555554421 11 123344555666667777777777666543
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.00084 Score=48.91 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=28.4
Q ss_pred hcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 379 RTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
..|++++|+++|+++. ..|+ +...+..+..++...|++++|...++++....|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3455555555555432 2232 244455555555555555555555555555555543
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.063 Score=48.97 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH-----HHHHHH
Q 039695 97 TSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV-----CSSLVD 171 (605)
Q Consensus 97 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-----~~~Li~ 171 (605)
++++..+.-.|.+.-.+.++.+.++...+.+......+.+.....||.+.|...|+.+.+..-..|..+ .-....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444555555555656666666666655444555555566666666666666666665554422222222 222233
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 172 MYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
.|.-.+++..|...|++++. .|++.-|.-.-+..-.|+..+|++.+..|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556666666665554 3334444333333344566666666666654
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.014 Score=47.59 Aligned_cols=88 Identities=20% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC---CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 039695 374 VDMLGRTGRLDEAYKLAKSIQV---DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ---VANAYVTLSNTYAL 447 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 447 (605)
..++-..|+.++|+.+|++... ..+.....+-.+.+.+...|++++|..++++.++..|+ +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4455566777777777665321 11111335556777777777777777777777776666 44555566667777
Q ss_pred cCChhHHHHHHHHH
Q 039695 448 AGEWENVHSLRSEM 461 (605)
Q Consensus 448 ~g~~~~a~~~~~~m 461 (605)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 78888877766543
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.79 E-value=0.0095 Score=57.54 Aligned_cols=132 Identities=13% Similarity=0.044 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHH---HHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----C-CCCchh
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSM---YRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-----V-DPDGGP 401 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~-~p~~~~ 401 (605)
..|..|-..|.-.|+++.|+..++.= .+++|-... ...+..+.+++.-.|.++.|.+.++..- . ......
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34566666666778899988776532 234443332 5567788888888999999988876521 1 111114
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIES----N--QQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.+.-+|.+.|....+++.|+..+.+-+.+ + .....++.+|+++|...|..+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56778889998888999999888776542 2 23345888999999999999999887665543
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.78 E-value=0.017 Score=54.74 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCch--hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHH
Q 039695 368 KHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGG--PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV---ANAYVTL 441 (605)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 441 (605)
..|...+..+.+.|++++|...|+.+. ..|+.. +..+--+..++...|+++.|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345555555556677777777777643 334421 2356667777788888888888888888776664 3455566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 039695 442 SNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 442 ~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+.+|...|++++|.++++++.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 777888888888888888776643
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.77 E-value=0.0027 Score=41.48 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (605)
.+|..+..++...|++++|+++++++++..|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988877653
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.37 Score=47.19 Aligned_cols=85 Identities=16% Similarity=0.075 Sum_probs=54.7
Q ss_pred HHHHcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhc
Q 039695 305 GAAKYGLGRFSLDLFNEMISR---GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRT 380 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 380 (605)
-..++|++.+|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.|. +..|-.-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHH
Confidence 345678888888888877652 345555666666667777888888877666553 44544 33443334445556
Q ss_pred CCHHHHHHHHHh
Q 039695 381 GRLDEAYKLAKS 392 (605)
Q Consensus 381 g~~~~A~~~~~~ 392 (605)
+.|++|.+-+++
T Consensus 335 e~~e~AV~d~~~ 346 (486)
T KOG0550|consen 335 EKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHHHHH
Confidence 778888777766
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.75 E-value=0.02 Score=55.47 Aligned_cols=255 Identities=12% Similarity=-0.002 Sum_probs=150.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhh----HHHHHHHHhccCChHHHHHHHHHHHH--h--CC-CCchhHHHHHHHH
Q 039695 102 GYINMGQPQIALLLFQKMLGNLVWPNEFT----FATVIKACSMLADLITGKQIHTHIET--F--GF-QYNLVVCSSLVDM 172 (605)
Q Consensus 102 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~Li~~ 172 (605)
-+++.|+....+.+|+..++.|.. |..| |..|-++|.-.+++++|.++|..=+. . |- .-.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 457788888888888888887754 4433 55556677777888888887753221 1 10 0111222234444
Q ss_pred HHhCCCHHHHHHHHhh-c------CC--CChhhHHHHHHHHHHcCC--------------------hhHHHHHHHHH---
Q 039695 173 YGKCNDVDGARRVFDL-M------GC--RNVVSWTSIIVAHAQNAQ--------------------GHEALEMFREF--- 220 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~-m------~~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 220 (605)
+--.|.+++|.-.-.+ + .. ....++..+...|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543221 1 11 111233335555554443 22344444331
Q ss_pred -HHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHH----hCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccC--
Q 039695 221 -NYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR----SGCE-FNDVVASALVDMYAKCGSVNYSDKVFNRIS-- 292 (605)
Q Consensus 221 -~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 292 (605)
...|.--.-...|..+-+.|.-+|+++.+...|+.-+. .|-. .....+..|.+.|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 12220111223566666667778899999888865443 3322 234567778889999999999998887543
Q ss_pred -----CCC--cchHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 293 -----NPS--VVTYTSMIVGAAKYGLGRFSLDLFNEMISR-----GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 293 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.+. ..+..+|...|.-...+++|+.++.+-... ...-....+.+|..++...|..++|+.+.+.-
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 232 235566778888888889999888764321 11223467888999999999999988776654
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.14 Score=46.92 Aligned_cols=232 Identities=10% Similarity=0.026 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhh-cccCc-hh-hHHHHHHHHHH-hCCCCcHhHHH
Q 039695 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC-ASLGR-LV-SGKVAHGVVVR-SGCEFNDVVAS 269 (605)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~-~~~~~-~~-~a~~~~~~~~~-~g~~~~~~~~~ 269 (605)
...|+.-+..+++...+++|..-+....+-. .||-. |...-..+ .+.|. .. ..+.+|..+.+ .|. -++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD--~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqe 140 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD--QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQE 140 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC--Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHH
Confidence 3456666777777777777765554443322 22211 10000000 01111 11 12234444443 222 244
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CCcc--------hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 270 ALVDMYAKCGSVNYSDKVFNRISN--PSVV--------TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 270 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
+|...|.-..-+++-...|+.-.. ..+. ..+.++..+.-.|.+.-.+.++++.++...+-++.....|.+
T Consensus 141 sLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr 220 (366)
T KOG2796|consen 141 SLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH
Confidence 555555544444444444443221 1222 234455555556666667777777777655556666667777
Q ss_pred HHhccCcHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcC
Q 039695 340 ACSHSGLVDEGIQHLDSMYRKYG----IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g 415 (605)
.-.+.|+.+.|..+|+...+..+ +.-..-+.......|.-++++.+|...+.+++...+.++..-|.-.-+..-.|
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 77777777777777776533322 11112222222233444555566666665555333323444444444444455
Q ss_pred ChHHHHHHHHHHHhcCCC
Q 039695 416 RVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~ 433 (605)
+...|++..+.+++..|.
T Consensus 301 ~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHhccCCc
Confidence 566666666666655554
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.0073 Score=60.09 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchh--hHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGP--LLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
...++.+..+|.+.|++++|+..|++ +...|+... .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666666666666666665 344454211 24666666666666666666666666665
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.03 Score=48.06 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
......++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677888889999999999999999999999999999999999999999999999998853
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.061 Score=43.92 Aligned_cols=100 Identities=8% Similarity=-0.073 Sum_probs=57.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHh
Q 039695 100 MAGYINMGQPQIALLLFQKMLGNLVWPN--EFTFATVIKACSMLADLITGKQIHTHIETFGFQ--YNLVVCSSLVDMYGK 175 (605)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~ 175 (605)
-.++-..|+.++|+.+|++....|+... ...+..+-+.+...|++++|..+++........ -+..+...+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445567788888888888877776543 234555666677777778777777777654211 022222333345556
Q ss_pred CCCHHHHHHHHhhcCCCChhhHHH
Q 039695 176 CNDVDGARRVFDLMGCRNVVSWTS 199 (605)
Q Consensus 176 ~g~~~~A~~~~~~m~~~~~~~~~~ 199 (605)
.|+.++|.+.+-....++...|.-
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~r 111 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRR 111 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 677777666665443333333333
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=1.1 Score=46.79 Aligned_cols=30 Identities=10% Similarity=-0.072 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHHHcCCChhHHHHHHhcC
Q 039695 59 LSNTFTLNHLINCYVRLKKTQVARQLFDEM 88 (605)
Q Consensus 59 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 88 (605)
.|.+..|..|...-.+.-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 466777777666665666677777766555
No 204
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.59 E-value=1 Score=45.78 Aligned_cols=161 Identities=10% Similarity=0.102 Sum_probs=117.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
.+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ +++.+-|.++|+.=.+++|-.| .--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 456677777777778889999999999988888 5566667776554 5888999999997776655433 34456778
Q ss_pred HHhhcCCHHHHHHHHHhCCC---CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhc
Q 039695 376 MLGRTGRLDEAYKLAKSIQV---DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV----ANAYVTLSNTYALA 448 (605)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~ 448 (605)
-+...++-..|..+|++... .|+....+|..++.--..-|+...+.++-++....-|.+ ...-..+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 88889999999999988642 345456799999999999999999999888887655522 12334566777766
Q ss_pred CChhHHHHHHHH
Q 039695 449 GEWENVHSLRSE 460 (605)
Q Consensus 449 g~~~~a~~~~~~ 460 (605)
+.+..-..=++.
T Consensus 524 d~~~c~~~elk~ 535 (656)
T KOG1914|consen 524 DLYPCSLDELKF 535 (656)
T ss_pred ccccccHHHHHh
Confidence 665544443333
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=1.4 Score=46.72 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHH
Q 039695 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407 (605)
Q Consensus 328 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~l 407 (605)
.-...|.+-.+.-+...|+..+|.++-.+. . -||-..|-.-+.+++..+++++-+++-++.+ . +.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---s--PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---S--PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---C--CCCchhH
Confidence 334445555666677778888888876555 2 5777777777888999999999888877764 3 5678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
..+|.+.|+.++|.+.+-+.-. +.-...+|.+.|++.+|.++--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 8999999999998877654322 1257788999999988887643
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=1.4 Score=46.63 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 039695 272 VDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGI 351 (605)
Q Consensus 272 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 351 (605)
+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-.++-+.+.. +.-|.-...+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence 44455678999999999999989999999999999999999877776655442 345666788999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 039695 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 352 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (605)
+++.... |.. -.+.+|.+.|++.+|.++.-+-
T Consensus 765 KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 765 KYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHHh
Confidence 9998762 222 4678899999999998886543
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.46 E-value=0.97 Score=44.03 Aligned_cols=302 Identities=14% Similarity=0.080 Sum_probs=167.2
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCChHHHHHHHHH
Q 039695 78 TQVARQLFDEMLEPNVVSYTSLMAGYIN--MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS--MLADLITGKQIHTH 153 (605)
Q Consensus 78 ~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~ 153 (605)
+..+.+.|..-. --.-|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..+|.+-. -.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 344444444321 12345556555554 45666666655544322 4446666777776554 45888888888888
Q ss_pred HHHhCCCCchhH--HHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 039695 154 IETFGFQYNLVV--CSSLVDMYGKCNDVDGARRVFDLMGC--RN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228 (605)
Q Consensus 154 ~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 228 (605)
|... |.... ...|.-.--+.|+.+.|...-+..-. |. .-.|.+.+...+..|+++.|+++++.-+....+.+
T Consensus 146 Ml~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred HhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 8752 22211 11222222356777777776665533 22 24567788888888888888888877665443455
Q ss_pred ChhH--HHhHHHhhcc---cCchhhHHHHHHHHHHhCCCCcHhHHH-HHHHHHHhcCCHHHHHHHHhccCC--CCcchHH
Q 039695 229 NQHM--LASVINACAS---LGRLVSGKVAHGVVVRSGCEFNDVVAS-ALVDMYAKCGSVNYSDKVFNRISN--PSVVTYT 300 (605)
Q Consensus 229 ~~~t--~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~ 300 (605)
|..- -..++.+-+. ..+...++..-.+..+ +.||..-.. .-...+.+.|++.++-.+++.+-+ |.+..|.
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 5432 1222222111 1233344444333333 344433221 224567788888888888877754 4433332
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMIS-RGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLG 378 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 378 (605)
.|....-.+.++.-+++... ..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-.
T Consensus 301 ----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIee 373 (531)
T COG3898 301 ----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEE 373 (531)
T ss_pred ----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHh
Confidence 33333334445555544433 235554 3455566667777788777776655553 45777777777776654
Q ss_pred h-cCCHHHHHHHHHhCC
Q 039695 379 R-TGRLDEAYKLAKSIQ 394 (605)
Q Consensus 379 ~-~g~~~~A~~~~~~m~ 394 (605)
- .|+-.++...+.+..
T Consensus 374 AetGDqg~vR~wlAqav 390 (531)
T COG3898 374 AETGDQGKVRQWLAQAV 390 (531)
T ss_pred hccCchHHHHHHHHHHh
Confidence 3 477777777776643
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.44 E-value=0.51 Score=40.99 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=37.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhc
Q 039695 304 VGAAKYGLGRFSLDLFNEMISR---GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380 (605)
Q Consensus 304 ~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 380 (605)
++....+++.+|...++++.+. +-.||. ...+..++...|....|+.-|+... ...|+...-.....++.+.
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~q 206 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQ 206 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHh
Confidence 3333344444444444444432 122332 2234445555566666666665553 2344444433444555566
Q ss_pred CCHHHHHH
Q 039695 381 GRLDEAYK 388 (605)
Q Consensus 381 g~~~~A~~ 388 (605)
|+.++|..
T Consensus 207 gr~~ea~a 214 (251)
T COG4700 207 GRLREANA 214 (251)
T ss_pred cchhHHHH
Confidence 65555433
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.41 E-value=0.56 Score=40.74 Aligned_cols=134 Identities=15% Similarity=0.099 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc-hhhH
Q 039695 327 IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGII-PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG-GPLL 403 (605)
Q Consensus 327 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-~~~~ 403 (605)
..|....-..|..+....|+..+|...|++... |+- -|....-.+.++....+++.+|...++++- ..|.. .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777788888888888888887742 443 456677777777777888888888877642 22210 1334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
--.+...+...|.+..|+..|+.++..-|+ +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455677888889999999999999887775 44556667788889988887766555544
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.34 E-value=0.013 Score=43.25 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=51.5
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 375 DMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
..|.+.+++++|.+.++.+. ..|+ ++..|......+...|+++.|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 56788899999999988854 3444 377888899999999999999999999999999876543
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.0099 Score=44.56 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIES----NQQ---VANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
..+++.+...+...|++++|+..+++++++ +++ ...++..++.+|...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346667777777777777777777777643 221 13466777888888888888888777654
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.05 E-value=1.8 Score=43.06 Aligned_cols=410 Identities=12% Similarity=0.100 Sum_probs=222.1
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 47 ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNV---VSYTSLMAGYINMGQPQIALLLFQKMLGNL 123 (605)
Q Consensus 47 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 123 (605)
.++.+.+... +.|+.+|-.||.-|...|..++-++++++|..|-+ .+|..-|++=....++.....+|.+.+...
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 4444444332 66889999999999999999999999999988754 579999998888889999999999988865
Q ss_pred CCCChhhHHHHHHHHhccCCh------HHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---hCC------CHHHHHHHH
Q 039695 124 VWPNEFTFATVIKACSMLADL------ITGKQIHTHIET-FGFQYN-LVVCSSLVDMYG---KCN------DVDGARRVF 186 (605)
Q Consensus 124 ~~pd~~t~~~ll~a~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~Li~~y~---~~g------~~~~A~~~~ 186 (605)
+..| .|..-|.-..+.... ....+.++..+. .+++|- ...|+..++..- ..| ++|..++.+
T Consensus 107 l~ld--LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LNLD--LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred ccHh--HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 5534 344334332222211 122334444443 234432 334555544332 223 345556666
Q ss_pred hhcCC-C---------ChhhHHHHHHHHHH-------cCChhHHHHHHHHHHH--cCC---CCCChhHHHhHHHh-----
Q 039695 187 DLMGC-R---------NVVSWTSIIVAHAQ-------NAQGHEALEMFREFNY--QSR---DRPNQHMLASVINA----- 239 (605)
Q Consensus 187 ~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~~~---~~p~~~t~~~ll~a----- 239 (605)
.++.. | |-..|..=+..... ..-+-.|...+++... .|. .+.+..|++.+-+.
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 66643 1 11122211111111 1123445555555532 220 11233344332220
Q ss_pred ------hccc-----Cc-hh-hHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc--------
Q 039695 240 ------CASL-----GR-LV-SGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSV-------- 296 (605)
Q Consensus 240 ------~~~~-----~~-~~-~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-------- 296 (605)
-... ++ .+ ...-+|.+.... +.....+|----..+...++-+.|.+......+ |+.
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~y 343 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYY 343 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHH
Confidence 0000 00 00 001111221111 122223333333334456677777777665543 221
Q ss_pred ----------chHHHHHHHHHH---cCChhHHHHH------HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 297 ----------VTYTSMIVGAAK---YGLGRFSLDL------FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 297 ----------~~~~~li~~~~~---~g~~~~A~~l------~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.+|..++..+.+ .|+.+.+... ..+..-....-=...|...+++-.+..-++.|..+|-+.
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 112222222221 1111111111 111100001111245666777777778889999999998
Q ss_pred HHhcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-
Q 039695 358 YRKYG-IIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV- 434 (605)
Q Consensus 358 ~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 434 (605)
++.+ +.+++..+++++.-++ .|+..-|.++|+. |..-||. +..-+-.+.-+...++-+.|..+|+..++.-..+
T Consensus 424 -rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~-~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 424 -RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDS-TLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred -hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 4556 5678889999888665 5788889999886 4444551 3333445566677788889999999776532222
Q ss_pred -CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 435 -ANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 435 -~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
...|..++.--+.-|+...|..+-++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 457888888888889988888877777664
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.01 E-value=1.4 Score=41.41 Aligned_cols=52 Identities=15% Similarity=-0.065 Sum_probs=23.7
Q ss_pred HHHhCCCHHHHHHHHhhcCC--CCh-hh---HHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 172 MYGKCNDVDGARRVFDLMGC--RNV-VS---WTSIIVAHAQNAQGHEALEMFREFNYQ 223 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~m~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 223 (605)
.+.+.|++++|.+.|+++.. |+. .. .-.+..+|.+.+++++|+..|++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445555555555555533 211 11 112334445555555555555555443
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.92 E-value=0.11 Score=49.23 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=48.8
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC--chhhHHHHHHHHHHHcCChHH
Q 039695 344 SGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD--GGPLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 344 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~~~ll~~~~~~g~~~~ 419 (605)
.|++++|...|+.+++.+.-.+ ....+..+...|...|++++|...|+.+. ..|+ ..+..+-.+...+...|+.+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 3455555555555543321111 02334445555566666666666655542 1121 013344455566667777777
Q ss_pred HHHHHHHHHhcCCCCC
Q 039695 420 AVEASNQLIESNQQVA 435 (605)
Q Consensus 420 a~~~~~~~~~~~p~~~ 435 (605)
|...++++++..|+..
T Consensus 236 A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 236 AKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHCcCCH
Confidence 7777777777777654
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.88 E-value=0.072 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=85.1
Q ss_pred HHHHHHhccC--CCCcchHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc---------
Q 039695 283 YSDKVFNRIS--NPSVVTYTSMIVGAAKY-----GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL--------- 346 (605)
Q Consensus 283 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--------- 346 (605)
..++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4456677666 67888888888888754 5566667778899999999999999999988755422
Q ss_pred -------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHH-HHHHHHHhCC
Q 039695 347 -------VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD-EAYKLAKSIQ 394 (605)
Q Consensus 347 -------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~ 394 (605)
-+=++.++++| +.+|+.||.++-..|++++++.+..- +..++.--|+
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23378899999 88999999999999999999988643 3444443343
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.84 E-value=0.11 Score=42.89 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 039695 326 GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376 (605)
Q Consensus 326 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 376 (605)
...|+..+..+++.+|+..+++..|.++.+...+.++++-+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777777777777777777777777777777777766666666666553
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.84 E-value=0.076 Score=42.93 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=72.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHhcC
Q 039695 375 DMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN----AYVTLSNTYALAG 449 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g 449 (605)
-+++..|++++|++.|.+. ..-|. ++..||.-..+++-.|+.++|..-+++++++..+... +|+.-+..|-..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4577889999999999773 23332 2778999999999999999999999999987533322 6777788899999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 039695 450 EWENVHSLRSEMKRTGI 466 (605)
Q Consensus 450 ~~~~a~~~~~~m~~~~~ 466 (605)
+-+.|..-|+...+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998887775
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.84 E-value=0.45 Score=49.12 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=20.5
Q ss_pred HHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 220 (605)
+.+...+..|-++|..|.+. ..+++.....+++++|..+-++.
T Consensus 757 lk~l~~~gLAaeIF~k~gD~-----ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL-----KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HhhccccchHHHHHHHhccH-----HHHhhheeecccchHhHhhhhhC
Confidence 33444455555555555331 12344444555555555554443
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.09 Score=51.34 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..++..|..++.+.+++..|++...+.++++|+|..+...-+.+|...|.++.|...|+++.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 456778888899999999999999999999999999999999999999999999999999987543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.65 E-value=0.57 Score=42.70 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=38.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHH
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESNQQVAN---AYVTLSNTYALAGEWENVHS 456 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~ 456 (605)
+..-|.+.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 445678899999999999999999887654 56688899999999885543
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.64 E-value=1.2 Score=45.11 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCchhhHHHHHHHHHHHc
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV--DPDGGPLLWGTLLSASRLH 414 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~~~ll~~~~~~ 414 (605)
+..++.+.|+.++|.+.+.+|.+.+...-...+...|+..|...+++.++..++.+-.. -|......|++.+--.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 44444555666666666666654432222234445566666666666666666555431 1222234555544333333
Q ss_pred CC---------------hHHHHHHHHHHHhcCCCCC
Q 039695 415 GR---------------VDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 415 g~---------------~~~a~~~~~~~~~~~p~~~ 435 (605)
++ ...|.+++.++.+.+|..+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 32 1246678888888888765
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.59 E-value=4.4 Score=44.05 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=128.7
Q ss_pred hhhccchHHHHHHHHHhhh-CCCCCChhhHHHHHHHhh-----ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCCh
Q 039695 5 LTRNLIFTLAASSLTRQNK-RSSCHTKAHFIQQLQECK-----HLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKT 78 (605)
Q Consensus 5 l~~~~~~~~a~~~l~~m~~-~g~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 78 (605)
....++++.|++......+ .|..+ +..++++.. +....-.+.+.....+ ..|..+...+..+|-..|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 3567889999999988654 34433 334444433 2222233333333223 23778889999999999999
Q ss_pred hHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-C---------hHH
Q 039695 79 QVARQLFDEMLE--PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA-D---------LIT 146 (605)
Q Consensus 79 ~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~-~---------~~~ 146 (605)
++|..++++..+ |+..--..+.-+|++.+.+.+-.+.--+|-+ ..+-+.+.|=++++.....- . +..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999855 5655555666777887776543333323322 23335666666666554321 1 234
Q ss_pred HHHHHHHHHHhC-CCCchhHHHHHHHHHHhCCCHHHHHHHHhh-----cCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 147 GKQIHTHIETFG-FQYNLVVCSSLVDMYGKCNDVDGARRVFDL-----MGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 147 a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 220 (605)
|....+.+++.+ -..+..=...-...+...|++++|.+++.. ...-+...-+--+..+...+++.+..++-.+.
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666666544 111111111222345567889999998843 22234444455667777888999998888888
Q ss_pred HHcC
Q 039695 221 NYQS 224 (605)
Q Consensus 221 ~~~~ 224 (605)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8776
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.59 E-value=2.5 Score=41.29 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=125.9
Q ss_pred ccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCcc--hHHHHHHHHHH---cCC
Q 039695 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-----NPSVV--TYTSMIVGAAK---YGL 311 (605)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~ 311 (605)
..|..+.+.++-+..-..- +.-.....++++..+..|+++.|.++.+.-. ++++. .-..|+.+-+. .-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3444455554444443322 2223455566666666666666666666443 23332 11223322221 233
Q ss_pred hhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHH--HHH
Q 039695 312 GRFSLDLFNEMISRGIKPNDVT-FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE--AYK 388 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~ 388 (605)
...|...-.+..+ +.||-+- -..-..++.+.|++.++-.+++.+- ...|.+..+...+ +.|.|+... ..+
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkR 317 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLYV--RARSGDTALDRLKR 317 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHH
Confidence 4455555444443 5666432 2334567889999999999999885 4466666554333 345554322 111
Q ss_pred --HHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 039695 389 --LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA-GEWENVHSLRSEMKRT 464 (605)
Q Consensus 389 --~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 464 (605)
-++.| +|+ +..+--++..+....|++..|..-.+.+....|.. +.|..|.++-... |+-.++...+-+..+.
T Consensus 318 a~~L~sl--k~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESL--KPN-NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhc--Ccc-chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 13334 344 26677778888889999999999999999999875 5888888886654 8888888877666553
No 224
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.45 E-value=2 Score=47.98 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=93.0
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHH
Q 039695 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVV 256 (605)
Q Consensus 177 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 256 (605)
+++++|+.-+.++. ...|.-.+.---++|.+.+|+.+ .+|+...+..+..+|+. .+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l---------y~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL---------YKPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe---------eccCHHHHHHHHHHHHH------------HH
Confidence 44555555554443 22333333333445556666555 35666666655555432 11
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH--H
Q 039695 257 VRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT--F 334 (605)
Q Consensus 257 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~ 334 (605)
.+.. .++--.-+|.++|+.++|.+ +|...|++.+|+.+-.+|... -|... -
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 1111 12223446788888888864 455678999999998877532 22222 2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 039695 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394 (605)
Q Consensus 335 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (605)
..|..-+...++.-+|-++..+.. -.|. -.+..|++...+++|..+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~----sd~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL----SDPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh----cCHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 456677778888888877776553 2332 34567888889999988876654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.32 E-value=0.024 Score=42.41 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCc--hhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-----VDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
..+|+.+...|.+.|++++|++.+++.. ..++. ...++..+..++...|++++|++.+++.+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666667777776666665431 11111 1446777888888888888888888877653
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.26 E-value=0.12 Score=51.64 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA----KHYTCVVDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 393 (605)
+...++.+..+|...|++++|...|+..+ .+.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566667777777777777777777654 445652 23666777777777777777777664
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.19 E-value=0.55 Score=38.27 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=80.6
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 039695 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 308 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 387 (605)
-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----D----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----D----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------chhhcchHHHH
Confidence 356777777887777653 133334444433333334444445555442222 2 12355555555
Q ss_pred HHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 388 ~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
.-+-.+. .+ ..-....++.....|+-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~--se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KL--SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--ch--HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5554442 12 4455666778888899999899999988766667888999999999999999999999999999874
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.28 Score=48.04 Aligned_cols=139 Identities=14% Similarity=0.020 Sum_probs=96.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCC
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 382 (605)
.+.|.+.|++..|...|++.+.. |. +...-+.++...... .-..++..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677778888887777776541 00 111111122221111 123456778888999999
Q ss_pred HHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH-HHHHHH
Q 039695 383 LDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENV-HSLRSE 460 (605)
Q Consensus 383 ~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 460 (605)
+.+|++..+... ..|+ |....-.=..++...|+++.|+..|+++++++|.|-.+-..|+.+--+..+..+. .++|..
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887743 3333 3666666788999999999999999999999999988888888887777666554 778888
Q ss_pred HHhC
Q 039695 461 MKRT 464 (605)
Q Consensus 461 m~~~ 464 (605)
|-.+
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8654
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.16 E-value=0.55 Score=39.28 Aligned_cols=63 Identities=19% Similarity=0.141 Sum_probs=45.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCC-CC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 374 VDMLGRTGRLDEAYKLAKSIQVD-PD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~-p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.....+.|++++|.+.|+.+..+ |- -....---|+.++.+.++++.|...+++.+++.|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 33445678888888888876421 11 01345566888889999999999999999999988765
No 230
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.14 E-value=6.1 Score=42.94 Aligned_cols=116 Identities=12% Similarity=-0.031 Sum_probs=53.2
Q ss_pred CChhHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 039695 310 GLGRFSLDLFNEMISR-GIKPNDV--TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 310 g~~~~A~~l~~~m~~~-g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (605)
.+.+.|..++.+.... +..+... ....+.......+...++...++.... -..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 4456677777665442 2322221 222222222222224445555543311 112333333344444467777777
Q ss_pred HHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039695 387 YKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLI 428 (605)
Q Consensus 387 ~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 428 (605)
...+..|+..-.....-.-=+..+....|+.+.|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777652111001111124445455677777777777763
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=94.99 E-value=0.44 Score=47.94 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..+.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5555556666666666777777777777777777777777777777777777777777664443
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.93 E-value=6 Score=41.78 Aligned_cols=152 Identities=7% Similarity=0.033 Sum_probs=89.8
Q ss_pred CCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCChHHHHHH
Q 039695 75 LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN----EFTFATVIKACSMLADLITGKQI 150 (605)
Q Consensus 75 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~ 150 (605)
-|++++|.+++-+|.++|.. |..+.+-|++-...++++. -|-..| ...|+.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999877753 4555666776666555432 111111 23566666666666677777776
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCh
Q 039695 151 HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ 230 (605)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 230 (605)
+..--. ...++.+|.+..++++-+.+-..+++.+ ...-.|...+...|..++|.+.|-+-- .|.
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~s-~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk- 882 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPEDS-ELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK- 882 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCccc-chHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-
Confidence 654321 1234556666666666666666665532 234456667777777777777665431 121
Q ss_pred hHHHhHHHhhcccCchhhHHHHHH
Q 039695 231 HMLASVINACASLGRLVSGKVAHG 254 (605)
Q Consensus 231 ~t~~~ll~a~~~~~~~~~a~~~~~ 254 (605)
..+.+|..++++.+|.++-.
T Consensus 883 ----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543
No 233
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.88 Score=42.95 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CCCCchhh
Q 039695 328 KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTG---RLDEAYKLAKSIQ-VDPDGGPL 402 (605)
Q Consensus 328 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~p~~~~~ 402 (605)
+-|...|..|..+|...|+.+.|..-|.... .+.|+ ...+..+..++.... ...++.++|+++. .+|+ ++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 3367788888888888888888888888775 34443 666666666654432 4567888888754 3443 366
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
+..-|...+...|++.+|...|+.|++..|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777788889999999999999999999887764
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.79 E-value=3.1 Score=37.91 Aligned_cols=197 Identities=14% Similarity=0.081 Sum_probs=123.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRIS-----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
..........+...+.+..+...+.... ......+......+...+...++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555566666666666666665543 12334455555566666667777777777666433331 11112222
Q ss_pred -HHhccCcHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCc-hhhHHHHHHHHHHH
Q 039695 340 -ACSHSGLVDEGIQHLDSMYRKYGIIP----DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDG-GPLLWGTLLSASRL 413 (605)
Q Consensus 340 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~~~ll~~~~~ 413 (605)
++...|+++.+...+..... ..| ....+......+...++.++|...+......... ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677888888887777632 232 2344444444566778888888887765422221 25667778888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++.+.+...+.......|.....+..+...+...|.++++...+.+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888755566666676666677888888877776543
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.64 E-value=0.37 Score=41.21 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HhcCCCCcHHH
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY----RKYGIIPDAKH 369 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 369 (605)
++..+...|++++|+.+.+.+... -+-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344444555555555555555553 22244555555555555555555555554442 23355555443
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.56 E-value=10 Score=42.77 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhCC--CHHHHHHHHhhcC
Q 039695 164 VVCSSLVDMYGKCN--DVDGARRVFDLMG 190 (605)
Q Consensus 164 ~~~~~Li~~y~~~g--~~~~A~~~~~~m~ 190 (605)
.-...+|..|.+.+ .++.|+....+..
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44556777777777 6677776666554
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.51 E-value=0.55 Score=48.15 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=89.4
Q ss_pred HHHHHcCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCC
Q 039695 304 VGAAKYGLGRFSLDLFNE-MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382 (605)
Q Consensus 304 ~~~~~~g~~~~A~~l~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 382 (605)
....-+|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence 344557788887666641 1111122 33466777777888999998876443321 2456678999
Q ss_pred HHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 383 ~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
++.|.++.++.. + +..|..|......+|+++.|++.+.+. .-+..|+-.|.-.|+.+.-.++-+...
T Consensus 334 L~~A~~~a~~~~---~--~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 334 LDIALEIAKELD---D--PEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHHCCCCS---T--HHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---c--HHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHH
Confidence 999999877664 5 789999999999999999999999884 346678888999999888888887777
Q ss_pred hCCC
Q 039695 463 RTGI 466 (605)
Q Consensus 463 ~~~~ 466 (605)
.+|-
T Consensus 401 ~~~~ 404 (443)
T PF04053_consen 401 ERGD 404 (443)
T ss_dssp HTT-
T ss_pred HccC
Confidence 7664
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.40 E-value=0.081 Score=31.95 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=4.2 Score=37.19 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCCch
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ-------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES----NQQVANA 437 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~ 437 (605)
.|......|.+..+++||-..|.+-. .-|+ .-..+.+.+-.+.-..++..|++.++.-.+. +|++..+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~-~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS-QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc-HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 34444556667777777666554422 1122 0123455555556666788888888775543 3666667
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLR 458 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~ 458 (605)
...|+.+|- .|+.+++.++.
T Consensus 231 lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhc-cCCHHHHHHHH
Confidence 777777664 46666666554
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.23 E-value=3.4 Score=40.98 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHcCCChhHHHHHHhcCCCC---Chhh----HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039695 67 HLINCYVRLKKTQVARQLFDEMLEP---NVVS----YTSLMAGYIN---MGQPQIALLLFQKMLGNLVWPNEFTFATVIK 136 (605)
Q Consensus 67 ~li~~~~~~g~~~~A~~~f~~m~~~---~~~~----~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~ 136 (605)
.|+-.|-...+++...++++.+... ++.. --...-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777888888888877442 1111 1112223334 6777888888877666556667777776665
Q ss_pred HH
Q 039695 137 AC 138 (605)
Q Consensus 137 a~ 138 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 241
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.22 E-value=4.2 Score=36.97 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=9.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 039695 200 IIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
++.++.+.|++++|...|++...
T Consensus 48 la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 48 LAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.16 E-value=0.14 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888887764
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.09 E-value=0.61 Score=38.51 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=50.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc--CCCChhhHHHHHHHH
Q 039695 127 NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM--GCRNVVSWTSIIVAH 204 (605)
Q Consensus 127 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~ 204 (605)
|..++..++-++++.|+++....+.+..- |+.++... ..+. +..- ..|+.....+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 44566666666666676666666654332 22222100 0000 1000 125566666666666
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc
Q 039695 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 241 (605)
+.+|++..|+++.+...+.-+++.+..++..++.-+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6666666666666666555445555666666665443
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.97 E-value=0.43 Score=44.22 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=78.8
Q ss_pred hHHHHHHhcCC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC---------
Q 039695 79 QVARQLFDEML--EPNVVSYTSLMAGYINM-----GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA--------- 142 (605)
Q Consensus 79 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~--------- 142 (605)
-...+.|...+ ++|-.+|-+.+..|... +.++-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677665 67888888888888654 455656666788999999999999999998764432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH-HHHHHHHhhc
Q 039695 143 -------DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV-DGARRVFDLM 189 (605)
Q Consensus 143 -------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~m 189 (605)
+-+-+..++++|...|+-||..+--.|++++++.+.. .+..++.--|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2234677888888888888888888888888777653 3333443333
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.89 E-value=1.5 Score=44.34 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=88.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 039695 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 388 (605)
..++..-+++-++..+ +.||..+...++ +--.+..+.++++++++.++.. ...+..- ......|..- +
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s-~~~~~~g~~~---e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKS-QFLQHHGHFW---E 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchh-hhhhcccchh---h
Confidence 3444555555555554 556654433333 3334556788888888775321 0000000 0000111111 1
Q ss_pred HHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 389 LAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ--VANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 389 ~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.+..-...|- ..+-..|..++.+.|+.++|++.++++++..|. +-.+...|++++...+++.++..++.+..+-..
T Consensus 249 ~~~~Rdt~~~--~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 249 AWHRRDTNVL--VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhccccchh--hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 1111111122 334456788888999999999999999987765 345788999999999999999999998866555
Q ss_pred ccCCceeE
Q 039695 467 HKEPGCSW 474 (605)
Q Consensus 467 ~~~~~~s~ 474 (605)
++....+|
T Consensus 327 pkSAti~Y 334 (539)
T PF04184_consen 327 PKSATICY 334 (539)
T ss_pred CchHHHHH
Confidence 55544444
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=4.9 Score=38.02 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=21.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
...|+..+|..+|......... +...-..+..++...|+++.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444555555555444442111 1223333444444455555555444433
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=3.3 Score=39.09 Aligned_cols=122 Identities=10% Similarity=0.086 Sum_probs=88.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHH---HHHHHHHc
Q 039695 339 HACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGT---LLSASRLH 414 (605)
Q Consensus 339 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~---ll~~~~~~ 414 (605)
......|+..++...|+..... .|. ...-..|...|...|+.++|..++..+|..-. ..-|.. -+..+.+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHH
Confidence 3456779999999999988643 333 56667789999999999999999999985433 333333 23334444
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 415 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.+..+... ++.-...+|+|...-..|...|...|+.++|.+.+-.+.+++.
T Consensus 217 a~~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 217 AATPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hcCCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44433332 3344567899999999999999999999999998887776654
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.73 E-value=4.7 Score=40.87 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=104.2
Q ss_pred chH--HHHHHHHHHc-----CChhHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHh--------c-cCcHHHHHHHHHHHH
Q 039695 297 VTY--TSMIVGAAKY-----GLGRFSLDLFNEMIS-RGIKPNDV-TFVGVLHACS--------H-SGLVDEGIQHLDSMY 358 (605)
Q Consensus 297 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~pd~~-t~~~ll~a~~--------~-~g~~~~a~~~~~~m~ 358 (605)
..| ..++.|.... ...+.|+.+|.+... ..+.|+-. .|..+..++. . .....+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666665542 235578889998883 23566543 3333322221 1 233455666665554
Q ss_pred HhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 359 RKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 359 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.+.|+ ......+..++.-.|+++.|..+|++.. ..|+ ...+|......+.-.|+.++|.+.+++.++++|....
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 45554 7777778888888899999999999854 4565 3667777777788899999999999999999998755
Q ss_pred hHH--HHHHHHHhcCChhHHHHHHH
Q 039695 437 AYV--TLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 437 ~~~--~l~~~y~~~g~~~~a~~~~~ 459 (605)
+-. ..+++|... ..++|.+++-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 433 334456654 4566666653
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.50 E-value=7.5 Score=37.40 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC-C--CcchHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCCH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN-P--SVVTYTSMIVGAAK--YGLGRFSLDLFNEMISRGIKPND 331 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~ 331 (605)
+.++-.-+....+.++.+.+.+++.+|.. . ....+..++..+-+ ......|...+..+....+.|..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 33333344445555666666666665542 1 22344444444321 12334555666665554444443
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.45 E-value=2.8 Score=35.43 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
.++..+.+.+.+.....+++.+...+. .+...++.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555554432 344444455555543
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.45 E-value=0.62 Score=43.34 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchH
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ-------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV---ANAY 438 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~ 438 (605)
.|+.-++.| +.|++.+|...|.... ..|+ ..-| |..++...|+++.|...|..+.+-.|+. +..+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--hHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 455444433 4556777776665532 1222 3333 7777788888888888888887765544 4567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.-|+.+..+.|+.++|..+++++.++-.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 7778888888888888888888876543
No 252
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.42 E-value=7.4 Score=42.20 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhC-CCCcHhHHHHHHHHHHh---
Q 039695 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSG-CEFNDVVASALVDMYAK--- 277 (605)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~--- 277 (605)
..+.-.|+++.|++.+.+ ..+ ...|.+.+...+.-+.-..-..... ..+.... -.+...-+..||..|.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~-~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEF-NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T--HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hcc-CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 344556777777777765 122 4556666666665554332222211 1111110 01111345556666654
Q ss_pred cCCHHHHHHHHhccC
Q 039695 278 CGSVNYSDKVFNRIS 292 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~ 292 (605)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 345555655555443
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.40 E-value=1.8 Score=36.24 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=53.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCC
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIK--PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR 382 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 382 (605)
...+.|++++|.+.|+.+...-.. -....-..++.++...+++++|...++..++-+--.|+ ..|...+.+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 344556666666666666554111 12234445566666666666666666666533222222 233333444333222
Q ss_pred HHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 383 LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 383 ~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
.+..+.-+-. .+.| .+....|...|+++++.-|++.
T Consensus 98 ~~~~~~~~~~--~drD---------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFFR--SDRD---------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhcc--cccC---------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2211111110 1111 1224577777888888878754
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.38 E-value=0.82 Score=44.01 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=62.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCC--C--cHHHHHHHHHHHhhcCCHHHHHHHHH-------hCCCCCCch----h
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGII--P--DAKHYTCVVDMLGRTGRLDEAYKLAK-------SIQVDPDGG----P 401 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~-------~m~~~p~~~----~ 401 (605)
+-.|+...+.++++.+.|+...+-..-. | ...+|..|...|++..++++|.-+.. ....+ |.+ .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 4445555556666666666553322111 1 24556666677777666666544332 22211 100 1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCChhHHHHHHH
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESN--QQV----ANAYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
.+.-.+..+++..|....|.+.-+++.++. ..| ......++++|-..|+.|.|..-++
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 122234456667777777776666665532 222 2233456677777776666655444
No 255
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=14 Score=39.76 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039695 63 FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140 (605)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 140 (605)
.++..+|+.+.-.|++++|-.+.-.|...+..-|.--+..++..++......+ +.......+...|..+|-.+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45666677777777777777777777766777777666666666655433222 2222122234455555555544
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.14 E-value=1 Score=41.95 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRG----IKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCV 373 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 373 (605)
|+.-+. +.+.|++.+|...|...++.. ..|| .+-.|..++...|+++.|..+|..+.++++-.|. ++.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444333 334556777777777766642 1222 3334666777777777777777777666555554 4555566
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 039695 374 VDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m 393 (605)
.....+.|+.++|...++++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666554
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.73 E-value=4 Score=33.50 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=75.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhCCCHHH
Q 039695 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV---CSSLVDMYGKCNDVDG 181 (605)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~Li~~y~~~g~~~~ 181 (605)
-.|..++..++..+...+. +..-+|.++--....-+-+...++++.+ |--.|... .-.++.+|++.|..
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch--
Confidence 3566777777777765532 4455666655444444444444444332 32222221 12233444444332
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCC
Q 039695 182 ARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC 261 (605)
Q Consensus 182 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 261 (605)
....+.-+....+.|+-++--+++.++... -.+++.....+..||.+.|+..++..++..+-+.|+
T Consensus 86 ------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 ------------SEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 223344567778888888888888887764 378888888899999999999999988888888875
Q ss_pred C
Q 039695 262 E 262 (605)
Q Consensus 262 ~ 262 (605)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.52 E-value=6.9 Score=40.84 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=101.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCcHHHH
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISR-GIKPND-----VTFVGVLHACSH----SGLVDEGIQHLDSMYRKYGIIPDAKHY 370 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~ 370 (605)
.+++...-.|+-+.+++++.+-.+. |+.-.. .+|..++..+.. ....+.+.++++.+.++ .|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 3444444456666666666554432 222111 123333333332 45788899999988644 5775544
Q ss_pred HH-HHHHHhhcCCHHHHHHHHHhCCC-C---CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH-HHHHH
Q 039695 371 TC-VVDMLGRTGRLDEAYKLAKSIQV-D---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV-TLSNT 444 (605)
Q Consensus 371 ~~-li~~~~~~g~~~~A~~~~~~m~~-~---p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 444 (605)
.- -...+...|++++|++.|++... . |.-....+--+...+....++++|...|.++.+...-....|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 33 34566778999999999996431 1 1111334555666788899999999999999987654444444 55566
Q ss_pred HHhcCCh-------hHHHHHHHHHHhC
Q 039695 445 YALAGEW-------ENVHSLRSEMKRT 464 (605)
Q Consensus 445 y~~~g~~-------~~a~~~~~~m~~~ 464 (605)
|...|+. ++|.+++.++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 7788888 8888888887654
No 259
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.48 E-value=4 Score=40.74 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039695 94 VSYTSLMAGYINMGQPQIALLLFQKMLGNL-VWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172 (605)
Q Consensus 94 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 172 (605)
.+|...|+...+..-.+.|..+|-+..+.| +.++.+.+++.+.-++ .|+...|..+|+.-.+. ++.+..--+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 445556666655555666666666666666 4456666666665443 45555666666554433 12222333445555
Q ss_pred HHhCCCHHHHHHHHhhcCC---CC--hhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 173 YGKCNDVDGARRVFDLMGC---RN--VVSWTSIIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~---~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
+..-++-+.|+.+|+...+ .+ ...|..||.--..-|+...+..+=++|..
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5666666666666664332 11 23455555555555555555555555544
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.11 E-value=1.2 Score=39.83 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=94.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHH--HHHhhcC
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV--DMLGRTG 381 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li--~~~~~~g 381 (605)
-|-..|-+.-|.-=|.+... +.|+. ..||.+--.+...|+++.|.+.|+... .+.|+- -|..+= -.+--.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y-~Ya~lNRgi~~YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTY-NYAHLNRGIALYYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcc-hHHHhccceeeeecC
Confidence 45566777777766776665 67764 567777777888999999999999875 567751 122222 2233468
Q ss_pred CHHHHHHHHHh----CCCCCCchhhHHHHHHH--------------HHHHcCChHH-------------HHHHHHHHHhc
Q 039695 382 RLDEAYKLAKS----IQVDPDGGPLLWGTLLS--------------ASRLHGRVDI-------------AVEASNQLIES 430 (605)
Q Consensus 382 ~~~~A~~~~~~----m~~~p~~~~~~~~~ll~--------------~~~~~g~~~~-------------a~~~~~~~~~~ 430 (605)
+++-|.+=|.. =+..|- ...|--+.. -+..+.+-.- .+.+++++.+.
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPf--R~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPF--RSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred chHhhHHHHHHHHhcCCCChH--HHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 88888765544 232332 344544332 1222221111 12233333333
Q ss_pred CCCC-------CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 431 NQQV-------ANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 431 ~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..++ ..+|.-|+.-|...|..++|..+|+.....++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3333 34788899999999999999999998876554
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.94 E-value=0.8 Score=43.32 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
..++..++.++...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456677788888888899999999999999998888999999999999999999999888876
No 262
>PRK15331 chaperone protein SicA; Provisional
Probab=91.54 E-value=1.3 Score=38.03 Aligned_cols=82 Identities=13% Similarity=-0.024 Sum_probs=35.8
Q ss_pred cCCChhHHHHHHhcCC--C-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 039695 74 RLKKTQVARQLFDEML--E-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQI 150 (605)
Q Consensus 74 ~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 150 (605)
..|++++|..+|.-+. . -|..-|..|-.++-..+++++|+..|...-..+. -|...+-..-.++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 3455555555555431 1 2333344444444444555555555544433221 1333333334444444555555554
Q ss_pred HHHHHH
Q 039695 151 HTHIET 156 (605)
Q Consensus 151 ~~~~~~ 156 (605)
|+.++.
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 444443
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.48 E-value=20 Score=37.45 Aligned_cols=161 Identities=8% Similarity=-0.009 Sum_probs=72.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC-CCCc-----hhHHHHHHHHHHh----CCCHHHHHHHHhhcCC--CChhhHH
Q 039695 131 FATVIKACSMLADLITGKQIHTHIETFG-FQYN-----LVVCSSLVDMYGK----CNDVDGARRVFDLMGC--RNVVSWT 198 (605)
Q Consensus 131 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~--~~~~~~~ 198 (605)
+..++...+-.||-+.|.+.+....+.+ +... ..+|+..+..+.. ..+.+.|.++++.+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3445555555566666666555554432 1110 1123333333322 3445556666666554 5554444
Q ss_pred HHH-HHHHHcCChhHHHHHHHHHHHcC--CCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHH-HHHHH
Q 039695 199 SII-VAHAQNAQGHEALEMFREFNYQS--RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVAS-ALVDM 274 (605)
Q Consensus 199 ~li-~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~ 274 (605)
-.- ..+...|+.++|++.|++..... ..+.....+--+.-.+.-..++++|...+..+.+..-- +..+|. ...-+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 332 23344566666666666443211 01112222333333444555666666666665553311 111221 22333
Q ss_pred HHhcCCH-------HHHHHHHhccC
Q 039695 275 YAKCGSV-------NYSDKVFNRIS 292 (605)
Q Consensus 275 y~~~g~~-------~~A~~~~~~~~ 292 (605)
|...|+. ++|.++|.+++
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4445555 56666666554
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=7.6 Score=37.31 Aligned_cols=149 Identities=13% Similarity=0.041 Sum_probs=67.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH----HHhhcCCHH
Q 039695 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD----MLGRTGRLD 384 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~ 384 (605)
+|...+|-..++++.+. .+.|-..+...=.+|...|+.+.-...++++..+ ..|+...|..+=. .+..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555555543 3344455555555555556655555555555322 2334333322222 223456666
Q ss_pred HHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCChhHHHHHHH
Q 039695 385 EAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV----ANAYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 385 ~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
+|++..++.. ..|. +...-.++...+...|+..++.+...+--..-... .-.|-..+-.|...+.++.|.++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6666655532 2221 12233344445555566666655544432211000 0122233334444556666666655
Q ss_pred HH
Q 039695 460 EM 461 (605)
Q Consensus 460 ~m 461 (605)
.=
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 43
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.08 E-value=0.45 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 437 AYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 437 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999998888743
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.06 E-value=9.2 Score=32.81 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=60.2
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~ 419 (605)
-...++.+.+..++..+. -+.|. ...-..-...+.+.|++.+|..+|+++...+.. ...-.+|+..|.....-..
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHcCChH
Confidence 346678899999998884 56776 444444556678899999999999998744331 3444566666666555555
Q ss_pred HHHHHHHHHhcCCC
Q 039695 420 AVEASNQLIESNQQ 433 (605)
Q Consensus 420 a~~~~~~~~~~~p~ 433 (605)
=.....++++.+++
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 55556666766653
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.97 E-value=12 Score=33.91 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=120.3
Q ss_pred HHHhHHHhhcccCchhhHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc-chHHHHHH-HH
Q 039695 232 MLASVINACASLGRLVSGKVAHGVVVRS-GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSV-VTYTSMIV-GA 306 (605)
Q Consensus 232 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~ 306 (605)
.+......+...+.+..+...+...... ........+..+...+...++...+.+.+..... ++. ........ .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3333333444444444444444433331 2233444455555555666666667666666554 221 22333333 67
Q ss_pred HHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhhcCC
Q 039695 307 AKYGLGRFSLDLFNEMISRGI--KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVVDMLGRTGR 382 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~ 382 (605)
...|+.++|...|.+...... ......+......+...++.+.+...+..... ..|+ ...+..+...+...+.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHccc
Confidence 788888888888888855211 12233444444446677888999988888753 3333 6777788888888889
Q ss_pred HHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 383 LDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 383 ~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
+++|...+.... ..|+ ....+..+...+...+..+.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999887754 2222 1345555555555777899999999999998886
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.97 E-value=13 Score=34.48 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGI--KPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
.|-.=+..-.+.|++++|.+.|+.+..... +-...+...++.++-+.+++++|....++..+.++-.|+.. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 333344455567888888888888776421 12345666667777777888888887777776666666532 233333
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----------------hH
Q 039695 376 MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-----------------AY 438 (605)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~ 438 (605)
+++ .|..+. .++.+. .-...|...|+++++.-|++.- -=
T Consensus 115 gLs----------~~~~i~-~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 115 GLS----------YFFQID-DVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHH----------HhccCC-ccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 333 111111 011000 0122344444555555554421 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
...++-|.+.|.|..|..-+++|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 24667788999999999988888876
No 269
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.89 E-value=0.44 Score=28.56 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
+|..+...+...|+++.|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777788888888888887777764
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.65 E-value=7 Score=37.83 Aligned_cols=139 Identities=10% Similarity=0.094 Sum_probs=83.9
Q ss_pred hhhHHHHHHHhhC-hhHH----HHHHHHHHHhCCCCchHHHHHHHHHHHc--CC----ChhHHHHHHhcCCC-------C
Q 039695 30 KAHFIQQLQECKH-LISL----ASVHSEILKSGFLSNTFTLNHLINCYVR--LK----KTQVARQLFDEMLE-------P 91 (605)
Q Consensus 30 ~~~~~~~l~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~m~~-------~ 91 (605)
..+++.++..-.. .... ..+++.+.+.|+..+.+++-+..-.... .. ....|..+|+.|.+ +
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 4556666665555 2222 7788889999999888777664433333 22 35567888888843 4
Q ss_pred ChhhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCChh--hHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCch
Q 039695 92 NVVSYTSLMAGYINMGQP----QIALLLFQKMLGNLVWPNEF--TFATVIKACSMLAD--LITGKQIHTHIETFGFQYNL 163 (605)
Q Consensus 92 ~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~ 163 (605)
+-.++..|+.. ...++ +.+..+|+.+...|...+.. ..+.+|..+..... ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 45566666655 33333 45667777777777665333 34444444433222 34667777888888877766
Q ss_pred hHHHHHH
Q 039695 164 VVCSSLV 170 (605)
Q Consensus 164 ~~~~~Li 170 (605)
..|..+.
T Consensus 218 ~~yp~lG 224 (297)
T PF13170_consen 218 MHYPTLG 224 (297)
T ss_pred ccccHHH
Confidence 6655443
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.41 E-value=9.8 Score=32.01 Aligned_cols=40 Identities=8% Similarity=-0.014 Sum_probs=15.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039695 99 LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139 (605)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~ 139 (605)
++..+.+.+.+.....+++.+...+. .+...++.++..++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33444334444444444444443331 23333344444443
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=15 Score=33.88 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 164 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 220 (605)
..++.-..+|..+|..+.|-..+++.. -...+-++++|+++|++.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHH
Confidence 345555666777777666655555431 122344566666666554
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.03 E-value=6.7 Score=37.96 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 313 RFSLDLFNEMISRGIKPNDV--TFVGVLHACSHSGL--VDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 313 ~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
+.+..+|+.+.+.|...+.. ....++.-+..... +..+.++++.+ ++.|+++...+|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHHH
Confidence 45677888888877776432 33333333322222 45777888888 56688888888776543
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.02 E-value=0.57 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888885543
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.98 E-value=12 Score=32.48 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=76.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhC-CCHHHHHHHHhhcC
Q 039695 113 LLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQY-NLVVCSSLVDMYGKC-NDVDGARRVFDLMG 190 (605)
Q Consensus 113 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~-g~~~~A~~~~~~m~ 190 (605)
++.++.+.+.++.|+...+..+++.+.+.|.+..-.++ +..++-+ +..+...|++.-.+. .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45556666778888888888888888888876544443 3334333 334444443332211 11344556666653
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHH
Q 039695 191 CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVR 258 (605)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 258 (605)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556777888889999988888765222 222234455665566655555555555444
No 276
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.86 E-value=1.1 Score=39.56 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=71.3
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCC----chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 039695 375 DMLGRTGRLDEAYKLAKSIQ-VDPD----GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 449 (605)
+-+.+.|++++|..-|.... .-|. ...+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556788888877765521 1222 114456666778889999999999999999999988888888889999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 039695 450 EWENVHSLRSEMKRTGI 466 (605)
Q Consensus 450 ~~~~a~~~~~~m~~~~~ 466 (605)
++++|..-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999988654
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.77 E-value=5.7 Score=32.53 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=39.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCc--hhhHHHHHHHHHHHcCC
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-V-DPDG--GPLLWGTLLSASRLHGR 416 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~~~ll~~~~~~g~ 416 (605)
+..|+++.|++.|.+.+ .+-| ....||.-.+++.-.|+.++|++=+++.. . .|.. .-..|..-...|+..|+
T Consensus 54 aE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34455555555554443 2233 24445555555555555555554444321 0 0110 01123333444566666
Q ss_pred hHHHHHHHHHHHhcC
Q 039695 417 VDIAVEASNQLIESN 431 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~ 431 (605)
.+.|..-|+.+-+++
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655554
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.59 E-value=0.67 Score=29.93 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.++..++..|...|++++|.+++++..+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999988654
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.42 E-value=26 Score=35.42 Aligned_cols=325 Identities=13% Similarity=0.098 Sum_probs=164.4
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCCC--------CChhhHHHHHHHHHhcC--------C-------hhHHHHHHH
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEMLE--------PNVVSYTSLMAGYINMG--------Q-------PQIALLLFQ 117 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g--------~-------~~~a~~~~~ 117 (605)
|-..-+..+..+...|++.+++.++++|.+ -++.+||.++-.+.++- . ++.++-...
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 344556677888899999999999998832 47788888555544321 1 122222233
Q ss_pred HHHhC------CCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCCHHHHHHHHhh
Q 039695 118 KMLGN------LVWPNEFTFATVIKACSML--ADLITGKQIHTHIETFGFQYNL-VVCSSLVDMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 118 ~m~~~------g~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~~~~ 188 (605)
+|... .+.|....+..++.-..-. ..+.--.+++..-...-+.|+- .+...|+.-+.+ +.+++..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 33221 1334444444444332211 2223333444444444344543 234455555554 44444444333
Q ss_pred cC--------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH-------Hhhc-c---cCchhhH
Q 039695 189 MG--------CRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI-------NACA-S---LGRLVSG 249 (605)
Q Consensus 189 m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-------~a~~-~---~~~~~~a 249 (605)
+. +.=+.++..++...++.++..+|-+.+.-+.. ..|+...-..++ +..+ . ..++..-
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~---ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI---LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 32 23356788888888999999888888776654 345443111111 1111 0 0111222
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHH---HHHHhcCC-HHHHHHHHhccCC---CCcchHHHHH----HHHHHc---CChhHH
Q 039695 250 KVAHGVVVRSGCEFNDVVASALV---DMYAKCGS-VNYSDKVFNRISN---PSVVTYTSMI----VGAAKY---GLGRFS 315 (605)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~li---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A 315 (605)
..+++.+....++... ...-|+ .-+-+.|. -++|.++++.+.+ -|..+-|... ..|.+. ....+-
T Consensus 362 L~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rL 440 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRL 440 (549)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2233333333322111 111121 11223333 6677777776653 3433333322 223221 223333
Q ss_pred HHHHHHHHHcCCCCCH----HHHHHHHHH--HhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 039695 316 LDLFNEMISRGIKPND----VTFVGVLHA--CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKL 389 (605)
Q Consensus 316 ~~l~~~m~~~g~~pd~----~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (605)
+.+-+-..+.|++|-. ..-+.|.+| .-..|++.++.-+-..+. .+.|++.+|..+.-.+....++++|.+.
T Consensus 441 lkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 441 LKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444456776632 233333333 344677777765555553 5677888887777777777888888888
Q ss_pred HHhCC
Q 039695 390 AKSIQ 394 (605)
Q Consensus 390 ~~~m~ 394 (605)
+..+|
T Consensus 518 l~~LP 522 (549)
T PF07079_consen 518 LQKLP 522 (549)
T ss_pred HHhCC
Confidence 88776
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.10 E-value=2.6 Score=39.95 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS-----RGIKPNDVTFVG 336 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 336 (605)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677788888999999999888888775 3556899999999999999999999988765 467776665544
Q ss_pred HHHH
Q 039695 337 VLHA 340 (605)
Q Consensus 337 ll~a 340 (605)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.76 E-value=2.1 Score=36.66 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=38.7
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...++.+.++.++..+.-+.|..+..-..-+..+...|+|.+|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 456677777777777777777777766667777777777777777777776554
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=5.4 Score=37.93 Aligned_cols=99 Identities=14% Similarity=0.275 Sum_probs=67.3
Q ss_pred hCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCC-C--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039695 56 SGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE-P--------NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWP 126 (605)
Q Consensus 56 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 126 (605)
.|.+.+..+...++..-....+++++...+-.+.. | +..+|--++. .-++++++.++..=...|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 45566666666777666666788888877766632 2 2223322222 235678888887777888888
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 039695 127 NEFTFATVIKACSMLADLITGKQIHTHIETFG 158 (605)
Q Consensus 127 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 158 (605)
|.+|++.+|..+.+.+++..|.++.-.++...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888887777666543
No 283
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.68 E-value=41 Score=36.74 Aligned_cols=442 Identities=10% Similarity=-0.038 Sum_probs=213.0
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCChhHHH
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSGF-LSNTFTLNHLINCYVRLKKTQVAR 82 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~ 82 (605)
...+.|++..+.++...+...+. .....|..+...... ....++-..+.+..- +.....-..-+..+++.+++....
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~~-~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLMN-QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcccc-CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 34567777777777776654433 223334344333332 123556666655432 333334444556667788888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH--HHHHHHHHhC--
Q 039695 83 QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK--QIHTHIETFG-- 158 (605)
Q Consensus 83 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~--~~~~~~~~~g-- 158 (605)
+ |..-+..+...-.....+....|+.++|......+=..|-. .......+++.+.+.|.+.... +=+..+...|
T Consensus 120 ~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~ 197 (644)
T PRK11619 120 A-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNT 197 (644)
T ss_pred H-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 7 44323345555566777788888887787777766544432 3455666777666555433221 1122222211
Q ss_pred ---------CCCc-hhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HcCChhHHHHHHHHHHHcCCC
Q 039695 159 ---------FQYN-LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA--QNAQGHEALEMFREFNYQSRD 226 (605)
Q Consensus 159 ---------~~~~-~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~ 226 (605)
+.++ ......++..+. +...+..++...+ ++...-...+.++. ...+.+.|..++.........
T Consensus 198 ~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~ 273 (644)
T PRK11619 198 GLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKL 273 (644)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC
Confidence 0111 111122222221 1222222222221 11111111122222 234557777777776444323
Q ss_pred CCChh--HHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchH-HH
Q 039695 227 RPNQH--MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVTY-TS 301 (605)
Q Consensus 227 ~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~-~~ 301 (605)
.++.. ....+....+..+...++...+....... .+..+...-+....+.++++.+...|..|.. .+...| -=
T Consensus 274 ~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW 351 (644)
T PRK11619 274 NEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW 351 (644)
T ss_pred CHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH
Confidence 22222 11222222222211334444444332222 2333344445555577888888888888763 221122 22
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH-HHHHH-HHHHhcCCCCcHHHHHHHHHHHhh
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEG-IQHLD-SMYRKYGIIPDAKHYTCVVDMLGR 379 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~~~~-~m~~~~~~~p~~~~~~~li~~~~~ 379 (605)
+..++...|+.++|...|++... .. +|-.++.+ .+.|..-.- ..... .. ....-.| -..-+..+..
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~-~~~~~~~----~~~ra~~L~~ 419 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPD-SALTQGP----EMARVRELMY 419 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchh-hhhccCh----HHHHHHHHHH
Confidence 45555667888888888888643 11 34333322 112211000 00000 00 0000011 1123455677
Q ss_pred cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCChhHHHH
Q 039695 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN---QQVANAYVTLSNTYALAGEWENVHS 456 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~ 456 (605)
.|+..+|...+..+....+ ......+.......|..+.++.........+ -.-+..|...+..+++.-..+.+.-
T Consensus 420 ~g~~~~a~~ew~~~~~~~~--~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 420 WNMDNTARSEWANLVASRS--KTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred CCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHH
Confidence 8999999888876554444 5566666677778888888887776543311 1123356667777777666766654
Q ss_pred HHHHHHhCCCccC
Q 039695 457 LRSEMKRTGIHKE 469 (605)
Q Consensus 457 ~~~~m~~~~~~~~ 469 (605)
.---..+.++.|.
T Consensus 498 ~ai~rqES~f~p~ 510 (644)
T PRK11619 498 MAIARQESAWNPK 510 (644)
T ss_pred HHHHHHhcCCCCC
Confidence 3333345566544
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.35 E-value=29 Score=34.57 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=56.2
Q ss_pred CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 397 PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ----QVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 397 p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+.....+|..+...+++.|.++.|...+.++...++ ..+.+...-+......|+.++|...++...+..+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 333367899999999999999999999999988652 2355677778889999999999999888877433
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.35 E-value=5.3 Score=41.10 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=47.1
Q ss_pred HHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 039695 72 YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151 (605)
Q Consensus 72 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 151 (605)
..++|+++.|.++-++.. +...|..|-....++|+++-|.+.|.+... |..|+-.|...|+.+.-.++.
T Consensus 328 Al~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHH
Confidence 345555555555544432 444566666666666666666655554422 444444455555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 039695 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 152 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 188 (605)
......| . +|.-..++.-.|++++..+++.+
T Consensus 397 ~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444443 1 22223333334555555544443
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.32 E-value=31 Score=34.91 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC--CCCcchH-------HHHHHHHH----HcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRIS--NPSVVTY-------TSMIVGAA----KYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~-------~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
..+..++....+.++...|.+.+.-+. +|+...- .++-+..+ ..-+..+=+.+|++.....+.-- .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-Q 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-Q 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-H
Confidence 355566666667777777776666544 2332211 11111111 11122333455555554332211 1
Q ss_pred HHHHHHH---HHhccCc-HHHHHHHHHHHHHhcCCCCc-HHHHHHHHH----HHhhc---CCHH---HHHHHHHhCCCCC
Q 039695 333 TFVGVLH---ACSHSGL-VDEGIQHLDSMYRKYGIIPD-AKHYTCVVD----MLGRT---GRLD---EAYKLAKSIQVDP 397 (605)
Q Consensus 333 t~~~ll~---a~~~~g~-~~~a~~~~~~m~~~~~~~p~-~~~~~~li~----~~~~~---g~~~---~A~~~~~~m~~~p 397 (605)
....|+. -+-+.|. -+.|..+++.+. .+.|. .++-|.+.. .|..+ ..+. .-.+++++....|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1112222 2333444 677888888774 23332 333332221 11111 1111 2223334433333
Q ss_pred C--chhhHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 398 D--GGPLLWGTLLSA--SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 398 ~--~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
- .+...-|.|..| +..+|++.++.-.-.-+.+..| .+.+|..++-+.....++++|..++..+.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 2 013345555554 4678999999888888888999 78899999999999999999999997653
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.26 E-value=2.1 Score=35.93 Aligned_cols=55 Identities=7% Similarity=-0.066 Sum_probs=46.4
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
...++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++.+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3478888888888888888888888888888888899999999999988877664
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.13 E-value=45 Score=36.53 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=86.2
Q ss_pred HHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 039695 66 NHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGY----INMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSML 141 (605)
Q Consensus 66 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 141 (605)
..-+++..+...++.|..+-..-. -|...-..++..| -+.|++++|...|-+-... +.| ..+++-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 345666667777777777766542 2333333344333 3568888888777665432 232 2345555555
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh-hHHHHHHHHHHcCChhHHHHHHH
Q 039695 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV-SWTSIIVAHAQNAQGHEALEMFR 218 (605)
Q Consensus 142 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 218 (605)
.....--.+++.+.+.|+. +...-+.|+++|.|.++.+.-.+..+........ -....+..+-+.+-.++|..+-.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 6666666777788888854 4455567888888888888888777776521111 12334455555555555554433
No 289
>PRK09687 putative lyase; Provisional
Probab=88.05 E-value=26 Score=33.71 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=39.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
.++..+....+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3445555555566666666433333333333333 223456666666664 566777666653 34555555555444
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.48 E-value=41 Score=35.32 Aligned_cols=381 Identities=11% Similarity=0.085 Sum_probs=220.6
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCCC--CChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEMLE--PNVV-SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA 137 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a 137 (605)
+-..|+.||.---...+++.+..+++.+.. |-.. -|-....-=.+-|..+.+.++|++-+.. ++-....|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344556666543344455666666666643 4443 2444444445668888999999887763 54455555555543
Q ss_pred H-hccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH---c----
Q 039695 138 C-SMLADLITGKQIHTHIETF-GFQ-YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQ---N---- 207 (605)
Q Consensus 138 ~-~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~---~---- 207 (605)
+ ...|+.+.....|+.++.. |.. .....|-..|..-..++++.....+++++.+--...++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 3 3557888888888888765 321 2334566677766778889999999998877444455544444433 2
Q ss_pred --CChhHHHHHHHHHHHc---CCCCCChhHHHhHHHhhcc-cCchhhHHH-------HHHHHH-----------------
Q 039695 208 --AQGHEALEMFREFNYQ---SRDRPNQHMLASVINACAS-LGRLVSGKV-------AHGVVV----------------- 257 (605)
Q Consensus 208 --g~~~~A~~~~~~m~~~---~~~~p~~~t~~~ll~a~~~-~~~~~~a~~-------~~~~~~----------------- 257 (605)
-..+++.++-...... +...+.......-+.-... .+.++.... ++..+.
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2344444443333221 1011222222222222111 112222221 111111
Q ss_pred Hh------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 039695 258 RS------G-CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV---VTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327 (605)
Q Consensus 258 ~~------g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 327 (605)
+. + .+++..+|..-++.-.+.|+.+.+.-+|++..-|-. ..|--.+.-....|+.+-|..++..-.+--+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 10 0 123456777778888888888888888887764322 2344444444444777777766665544322
Q ss_pred C--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHH---HHHHhCC-CCCCch
Q 039695 328 K--PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAY---KLAKSIQ-VDPDGG 400 (605)
Q Consensus 328 ~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m~-~~p~~~ 400 (605)
+ |....+.+.+ +-..|+++.|..+++.+..+ . |+ ...-.--+....+.|..+.+. +++.... .+-+
T Consensus 363 k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~-- 435 (577)
T KOG1258|consen 363 KKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKEN-- 435 (577)
T ss_pred CCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccC--
Confidence 2 3333333322 34568999999999999654 3 66 444444566778889999888 5554432 2222
Q ss_pred hhHHHHHHHH-----HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 039695 401 PLLWGTLLSA-----SRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449 (605)
Q Consensus 401 ~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 449 (605)
..+...+..- +...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3333333322 345688999999999999999999999999998877665
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.38 E-value=25 Score=32.77 Aligned_cols=180 Identities=11% Similarity=0.057 Sum_probs=107.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc------chHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH--HHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSV------VTYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPND--VTFV 335 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~--~t~~ 335 (605)
...|+-- ..-.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+..+++....- -.||. ..|.
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444443 344578999999999999985222 234445677888999999999999988742 23332 3444
Q ss_pred HHHHHHhcc----CcHHHHH---HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 039695 336 GVLHACSHS----GLVDEGI---QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLL 408 (605)
Q Consensus 336 ~ll~a~~~~----g~~~~a~---~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll 408 (605)
..+.-+... .+...+. .-|+.++.+ -|+ +.-..+|..-+..+. +.-..-=.++.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPN-------------SRYAPDAKARIVKLN---DALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCC-------------CcchhhHHHHHHHHH---HHHHHHHHHHH
Confidence 444333222 2222233 333333322 122 222222222222211 10011112355
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 409 SASRLHGRVDIAVEASNQLIESNQQVAN---AYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
.-|.+.|.+..|..-++.+++.-|+.+. ++..+..+|...|..++|.+.-+-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 6688999999999999999987655443 6667888999999999999987766544
No 292
>PRK09687 putative lyase; Provisional
Probab=87.33 E-value=29 Score=33.42 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=35.9
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCChhHHHhH
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQG----HEALEMFREFNYQSRDRPNQHMLASV 236 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~p~~~t~~~l 236 (605)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A 111 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASA 111 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 44444445555555555433333333322334444444445555555543 3455555555322 2444444444
Q ss_pred HHhhccc
Q 039695 237 INACASL 243 (605)
Q Consensus 237 l~a~~~~ 243 (605)
+.++...
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444443
No 293
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.58 E-value=12 Score=29.02 Aligned_cols=87 Identities=9% Similarity=0.060 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223 (605)
Q Consensus 144 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 223 (605)
.++|.-+-+.+...+- ....+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4556666555554431 123333334456778899999999999999999999987754 4677777777777788777
Q ss_pred CCCCCChhHHHh
Q 039695 224 SRDRPNQHMLAS 235 (605)
Q Consensus 224 ~~~~p~~~t~~~ 235 (605)
| .|...+|..
T Consensus 98 g--~p~lq~Faa 107 (115)
T TIGR02508 98 G--DPRLQTFVA 107 (115)
T ss_pred C--CHHHHHHHH
Confidence 6 555555543
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.55 E-value=9.5 Score=33.03 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=58.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHH---HHHhccCChHHHHHHHHHHHHhCCCCchhHH-HHH--HHHHHhCC
Q 039695 104 INMGQPQIALLLFQKMLGNLVWPNEFTFATVI---KACSMLADLITGKQIHTHIETFGFQYNLVVC-SSL--VDMYGKCN 177 (605)
Q Consensus 104 ~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~L--i~~y~~~g 177 (605)
++.+..++|+.-|..+.+.|... +.....+ ...+..|+...|...|+++-+....|-+.-- ..| .-.+...|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGS--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 44555666666666666554321 1111111 1234556666666666665543322222210 111 11234566
Q ss_pred CHHHHHHHHhhcCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 039695 178 DVDGARRVFDLMGCR-N---VVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224 (605)
Q Consensus 178 ~~~~A~~~~~~m~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 224 (605)
.+++.....+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+....
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 666666666655431 1 1223345555566777777777777765543
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.04 E-value=30 Score=33.50 Aligned_cols=149 Identities=9% Similarity=-0.003 Sum_probs=82.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHH
Q 039695 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS---GCEFNDVVASALVDMYAKCGSVNY 283 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~ 283 (605)
.|...+|-..++++.+. .+.|...+.-.=.+|..+|+.+.-+..++.+... ++|...++-..+.-++..||-+++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555556665554 3455555555556666666666666655555542 233333444444455567788888
Q ss_pred HHHHHhccCCCCc---chHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 284 SDKVFNRISNPSV---VTYTSMIVGAAKYGLGRFSLDLFNEMISR---GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 284 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
|++.-++..+-|. .+-.+....+-.+|+..++.++..+-... +-..-...|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 8887777765332 33344555566677888777776543321 00001112222223344457788888877643
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.01 E-value=6.1 Score=30.41 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+....+.+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355566666667778899999999999999999999999999877544332 4445665553
No 297
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.69 E-value=15 Score=32.21 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 039695 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 468 (605)
++.|...|+++.+.+|.+. .|..-+.+.. .|-+++.++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 5677778888888999874 5655555543 4888999988877643
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.30 E-value=48 Score=34.11 Aligned_cols=90 Identities=10% Similarity=0.087 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 039695 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275 (605)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 275 (605)
..-+++..+.++-.+.-...+..+|..-| .+...|..++..|... ..+.-..+++.+++..+. |+....-|++.|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 44556666666666666667777777644 4566667777777666 455566667766666533 455555566666
Q ss_pred HhcCCHHHHHHHHhcc
Q 039695 276 AKCGSVNYSDKVFNRI 291 (605)
Q Consensus 276 ~~~g~~~~A~~~~~~~ 291 (605)
-+ ++.+.+...|.++
T Consensus 143 Ek-ik~sk~a~~f~Ka 157 (711)
T COG1747 143 EK-IKKSKAAEFFGKA 157 (711)
T ss_pred HH-hchhhHHHHHHHH
Confidence 65 6666666666654
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.28 E-value=1.3 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 039695 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGAR 183 (605)
Q Consensus 152 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 183 (605)
++.++.. +.|...|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556677777777777777777765
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.26 E-value=6.7 Score=30.52 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.+..+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 445555666666788999999999999999999999999999886655433 336666654
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.23 E-value=9.1 Score=33.85 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHH
Q 039695 95 SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE--FTFATVIKACSMLADLITGKQIHTHIE 155 (605)
Q Consensus 95 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~ 155 (605)
.|..+..-|.+.|+.++|++.|.++......|.. ..+-.+++.+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555555555555566666555554333322 234445555555566666555554443
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.80 E-value=3.1 Score=39.92 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=29.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 039695 304 VGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQ 352 (605)
Q Consensus 304 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 352 (605)
+-|.++|.+++|++.|..-+. +.| |.+++..-..||.+...+..|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 457777777777777766554 344 66666666666666666555443
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.79 E-value=44 Score=33.21 Aligned_cols=148 Identities=12% Similarity=0.006 Sum_probs=72.1
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-cCCCCcHHH
Q 039695 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP---NDVTFVGVLHACSHSGLVDEGIQHLDSMYRK-YGIIPDAKH 369 (605)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 369 (605)
....+|..+...+.+.|+++.|...+.++...+..+ ++.....-+...-..|+..+|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344567777777777777777777777776533111 1222223334444567777777777666441 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--C-CCCCchhhHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSI--Q-VDPDGGPLLWGTLLSASRLH------GRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m--~-~~p~~~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
...+...+.. .......- . ..+......+..+..-+... ++.+.+...|.++.+..|....+|..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111100000 00000000 0 00000012333333333333 77888899999999999988777777
Q ss_pred HHHHHHh
Q 039695 441 LSNTYAL 447 (605)
Q Consensus 441 l~~~y~~ 447 (605)
++..+.+
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 7665543
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.12 E-value=0.8 Score=38.92 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=53.3
Q ss_pred HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChh
Q 039695 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313 (605)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (605)
..++..+.+.+.++....+++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 346677777888888888888888877667788889999999888777777766663222 22233344444444444
Q ss_pred HHHHHHH
Q 039695 314 FSLDLFN 320 (605)
Q Consensus 314 ~A~~l~~ 320 (605)
+|.-++.
T Consensus 88 ~a~~Ly~ 94 (143)
T PF00637_consen 88 EAVYLYS 94 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.86 E-value=16 Score=31.64 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=21.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhCCCHHHHHHHHhhc
Q 039695 140 MLADLITGKQIHTHIETFGFQYNLVV-CSSLVDMYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~~~~m 189 (605)
..+..++|+.-|..+.+.|...-+.. .-......+..|+...|...|+++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 44455555555555555543221111 111122334445555555555544
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.50 E-value=39 Score=31.59 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--------C-------CcchHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCH
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISN--------P-------SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPND 331 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~ 331 (605)
-+-|...|...|.+.+..+++..+.. . -...|..=|+.|..+.+-.+...+|++.... ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34556666666666666666665531 1 1235666788888888888888888876652 233444
Q ss_pred HHHHHHHHHHh-----ccCcHHHHHHHHHHHHHhcCC--CCc---HHHHHHHHHHHhhcCC----HHHHHHHHHhCCCCC
Q 039695 332 VTFVGVLHACS-----HSGLVDEGIQHLDSMYRKYGI--IPD---AKHYTCVVDMLGRTGR----LDEAYKLAKSIQVDP 397 (605)
Q Consensus 332 ~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~---~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~p 397 (605)
. ...+++-|. +.|.+++|-.-|-+..+.+.- .|. .--|-.|.+++.+.|- -++|. |.+.
T Consensus 228 l-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK------PyKN 300 (440)
T KOG1464|consen 228 L-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK------PYKN 300 (440)
T ss_pred H-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC------CCCC
Confidence 3 445666664 467788775433333344422 232 3346667777777662 22221 2223
Q ss_pred CchhhHHHHHHHHHHHcCChHHHHHH
Q 039695 398 DGGPLLWGTLLSASRLHGRVDIAVEA 423 (605)
Q Consensus 398 ~~~~~~~~~ll~~~~~~g~~~~a~~~ 423 (605)
++.....+.|+.+|..+ ++.+-+++
T Consensus 301 dPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred CHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 32266788888888654 44433333
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.35 E-value=7.2 Score=34.83 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=50.9
Q ss_pred hcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCChhHH
Q 039695 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN----QQVANAYVTLSNTYALAGEWENV 454 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~y~~~g~~~~a 454 (605)
+.|+ ++|.+.|-.+...|..+....-..+..|-...|.+.+++++-+++++. ..|+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344 456666666654443223333344444555778889999999888864 23467888999999999998887
Q ss_pred H
Q 039695 455 H 455 (605)
Q Consensus 455 ~ 455 (605)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.24 E-value=2.8 Score=26.26 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.17 E-value=1.9 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999887643
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.69 E-value=2.1 Score=25.56 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987643
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.46 E-value=34 Score=30.22 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCc------chHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 267 VASALVDMYAKCGSVNYSDKVFNRISNPSV------VTYTSMIVGAAKYGLGRFSLDLFNEM 322 (605)
Q Consensus 267 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m 322 (605)
.+..+.+.|.+.|+.+.|.+.|.++.+..+ ..+-.+|......|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445566666666666666666665544221 12333444444444554444444443
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.43 E-value=1.9 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 039695 437 AYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 437 ~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
+...|+..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677788888888888887764
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.26 E-value=6.2 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 406 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
.+..++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35667889999999999999999999998643
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.19 E-value=11 Score=25.61 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEeeeeccccCccchHHHHHHHHHHHHHHHHCCc
Q 039695 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMKERGY 513 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 513 (605)
...++-++.+.|++++|.+..+.+.+.. |...++......+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 4567889999999999999999987743 3344455555556667777763
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.87 E-value=3.5 Score=39.52 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=80.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCC
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
.+-|.+.|.+++|+..|..-+ .+.| +...|..-..+|.+..++..|..=......-.+.....|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456888999999999998664 6677 788888889999999999988776655331222123466666677777888
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 039695 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 455 (605)
..+|.+-++.+++++|.+.. |-..|.......++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 99999999999999998643 444455444444443
No 316
>PRK10941 hypothetical protein; Provisional
Probab=81.81 E-value=12 Score=35.50 Aligned_cols=63 Identities=19% Similarity=0.056 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456677788999999999999999999999999888888899999999999999888887654
No 317
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.74 E-value=1.5e+02 Score=37.02 Aligned_cols=314 Identities=13% Similarity=0.084 Sum_probs=172.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCCHHHHHHHHhh-cCCCChhhHHHHHHHHHHcCCh
Q 039695 134 VIKACSMLADLITGKQIHTHIETFGF--QYNLVVCSSLVDMYGKCNDVDGARRVFDL-MGCRNVVSWTSIIVAHAQNAQG 210 (605)
Q Consensus 134 ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~ 210 (605)
+..+-.+.+.+..|...++.-..... ......+-.|...|+.-+++|...-+... ...++. ..-|--....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 33455566777777777776311000 11223344455688888888887777663 333432 2345556678999
Q ss_pred hHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHH-HHHHHHhcCCHHHHHHHHh
Q 039695 211 HEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASA-LVDMYAKCGSVNYSDKVFN 289 (605)
Q Consensus 211 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~ 289 (605)
..|..-|+.+.+.+ ++...+++.++......+.++...-..+-.... ..+...-+++ =+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998765 344778888887777777776665543333322 2233333333 2444466777777666655
Q ss_pred ccCCCCcchHHHH-H-HHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH--------
Q 039695 290 RISNPSVVTYTSM-I-VGAAKYG--LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM-------- 357 (605)
Q Consensus 290 ~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m-------- 357 (605)
..+..+|.+. + ..+.+.. +.-.-.++.+.+.+.-+. =+.+|+..|.+..+.++.-.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5667777665 2 2222221 111122233333322111 123333333322222221111
Q ss_pred --HHhcCCCCcHH------HHHHHHHHHhhcCCHHHHHHHHHh----CCCCCC---chhhHHHHHHHHHHHcCChHHHHH
Q 039695 358 --YRKYGIIPDAK------HYTCVVDMLGRTGRLDEAYKLAKS----IQVDPD---GGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 358 --~~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~----m~~~p~---~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
....+..++.. .|..-+..-....+..+-+--+++ ...+|+ ....+|-.....++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11113333311 121122111111122221111111 112222 124589999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..-++.+..+ +.++.-.+......|+...|..++++..+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9888888774 46888999999999999999999999886554
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.72 E-value=2.8 Score=26.25 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.++..|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998865
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.38 E-value=3.2 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039695 404 WGTLLSASRLHGRVDIAVEASNQLIESNQ 432 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 432 (605)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444555555555555555544444
No 320
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.21 E-value=20 Score=34.08 Aligned_cols=112 Identities=9% Similarity=0.160 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc-cC-cHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 039695 312 GRFSLDLFNEMIS-RGIKPNDVTFVGVLHACSH-SG-LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYK 388 (605)
Q Consensus 312 ~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~-~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 388 (605)
..+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+...++-.++..+..+.+..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233455555555555443 11 2223334455555566667777778888888888888888888
Q ss_pred HHHhCC-C-CCCchhhHHHHHHHHHHHcCChHHHHHH
Q 039695 389 LAKSIQ-V-DPDGGPLLWGTLLSASRLHGRVDIAVEA 423 (605)
Q Consensus 389 ~~~~m~-~-~p~~~~~~~~~ll~~~~~~g~~~~a~~~ 423 (605)
+++... . .|..+...|..++..-...|+......+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 877633 1 2443466777777777777765544333
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.85 E-value=30 Score=29.33 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=38.0
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDP 397 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 397 (605)
..++.+++..+++.|. -+.|+ ...-..-.-.+.+.|++++|..+|+++...+
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3788888888888884 45665 3333344556778999999999999987544
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.60 E-value=42 Score=29.93 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=61.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHH-----HHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT-----CVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSAS 411 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~ 411 (605)
+...+...+++++|...++... + .|..+.+. .|.......|.+++|+..++... .++........-...+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l---~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQAL---A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHH---c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHH
Confidence 3455677888888888887664 2 22223333 34456677899999999988765 2221122333345678
Q ss_pred HHcCChHHHHHHHHHHHhcCCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
...|+-++|+..|++.++.+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 8889999999999999888744
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.53 E-value=1.6e+02 Score=36.71 Aligned_cols=306 Identities=8% Similarity=-0.017 Sum_probs=150.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039695 98 SLMAGYINMGQPQIALLLFQKM----LGNLVWPNEFTFATVIK-ACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDM 172 (605)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m----~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 172 (605)
.+-.+=.+.+.+.+|+..++.- .+.. -...+..++. .|+..++++....+...... .| .+++ .|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~---~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~--sl~~-qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE---TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP--SLYQ-QILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH---HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--cHHH-HHHH
Confidence 3334445667788888888873 2211 1123333444 88889999888877664111 22 2222 3445
Q ss_pred HHhCCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHH-hHHHhhcccCchhh
Q 039695 173 YGKCNDVDGARRVFDLMGC--RN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLA-SVINACASLGRLVS 248 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~-~ll~a~~~~~~~~~ 248 (605)
....|+++.|...|+++.. |+ ..+++-++......|.++.++-..+-..... .+....++ .=+.+.-+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhh
Confidence 5678999999999999976 33 5567777777777777777776554443321 22222222 22233345666666
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHH--HHHHHh--cCCHHHHHHHHhccCC------------C-CcchHHHHHHHHHHcCC
Q 039695 249 GKVAHGVVVRSGCEFNDVVASAL--VDMYAK--CGSVNYSDKVFNRISN------------P-SVVTYTSMIVGAAKYGL 311 (605)
Q Consensus 249 a~~~~~~~~~~g~~~~~~~~~~l--i~~y~~--~g~~~~A~~~~~~~~~------------~-~~~~~~~li~~~~~~g~ 311 (605)
....+. ... ..+|.+. .....+ ..+.-.-....+.+.+ . =...|+.++....-..
T Consensus 1537 ~e~~l~--~~n-----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e- 1608 (2382)
T KOG0890|consen 1537 LESYLS--DRN-----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE- 1608 (2382)
T ss_pred hhhhhh--ccc-----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-
Confidence 666554 111 1111111 111111 1110000011111100 0 0012233322221111
Q ss_pred hhHHHHHHHHHHH--cCCCCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHHhc----CCCCc-HHHHHHHHHHHh
Q 039695 312 GRFSLDLFNEMIS--RGIKPNDVT------FVGVLHACSHSGLVDEGIQHLDSMYRKY----GIIPD-AKHYTCVVDMLG 378 (605)
Q Consensus 312 ~~~A~~l~~~m~~--~g~~pd~~t------~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~ 378 (605)
++.+.+ .++.|+..+ |..-+.--....+..+-+--++...... ++.-. .++|-...+...
T Consensus 1609 -------l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1609 -------LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred -------HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 011111 123332221 1111211111111111111111111111 22222 677888888888
Q ss_pred hcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039695 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 431 (605)
++|+++.|...+-......- +..+.-...-..+.|+...|..++++.++..
T Consensus 1682 ~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 89999999887654332223 5667777777889999999999999999654
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.50 E-value=0.79 Score=38.96 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHH
Q 039695 134 VIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213 (605)
Q Consensus 134 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 213 (605)
+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666677777777777777666556677788888888888777777777764333 3334456666666667777
Q ss_pred HHHHHHH
Q 039695 214 LEMFREF 220 (605)
Q Consensus 214 ~~~~~~m 220 (605)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.35 E-value=3.3 Score=24.23 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 039695 441 LSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 441 l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
++.+|.+.|++++|.+.++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3444444444444444444443
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=11 Score=35.98 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=68.9
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CCc--chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 039695 259 SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-------PSV--VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP 329 (605)
Q Consensus 259 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 329 (605)
.|.+....+...++..-....+++++...+-++.. ++. .+|-.++ -.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 34555555666666666667778888877766653 222 2232222 2335678888888888889999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 360 (605)
|..|+..+++.+.+.+++..|.++.-.|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888877776544
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.17 E-value=4 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999987653
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.99 E-value=2.7 Score=24.64 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
+-.+..++...|+.++|.+.|+++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456778888999999999999999998863
No 329
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.03 E-value=43 Score=29.17 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=15.5
Q ss_pred HhCCCCchHHHHHHHHHHHcCCChhHHHHHHh
Q 039695 55 KSGFLSNTFTLNHLINCYVRLKKTQVARQLFD 86 (605)
Q Consensus 55 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 86 (605)
+.+++|+..++..+|+.+.+.|.+..-..++.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555555555555444444443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=41 Score=35.35 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.|+++.|..++-.++++ .-+.++.-+.++|..++|+++- ..||. -|.. ..+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFel----al~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RFEL----ALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hhhh----hhhcCcHHHHHHHHHhh
Confidence 46666666665555532 2334444455566666665542 22222 1222 23457777776665543
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 358 YRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 358 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
.+..-|..|.++....|++..|.+.|.... -|.+|+-.+...|+.+.-..+.....+.+..|.
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 245567777788788888888877776532 355666666666766655555555555444442
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
--.+|...|++++..+++..
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHh
Confidence 23456778888888877643
No 331
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.67 E-value=25 Score=33.77 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 039695 419 IAVEASNQLIESNQQVAN 436 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~ 436 (605)
.|.++..++.+.+|..|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 466777788888887664
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.64 E-value=24 Score=29.83 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred HHHHHHhCCCCch--HHHHHHHHHHHcCCChhHHHHHHhcCCC---------CChhhHHHHHHHHHhcCC-hhHHHHHHH
Q 039695 50 HSEILKSGFLSNT--FTLNHLINCYVRLKKTQVARQLFDEMLE---------PNVVSYTSLMAGYINMGQ-PQIALLLFQ 117 (605)
Q Consensus 50 ~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~ 117 (605)
...|.+.+..++. ...|.++.-.+..+++.-...+++.+.. .+-.+|++++.+..+..- ---+..+|.
T Consensus 25 ~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 25 LPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 3344555555554 3457777777777777777777777622 456678999998876665 345678888
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcc
Q 039695 118 KMLGNLVWPNEFTFATVIKACSML 141 (605)
Q Consensus 118 ~m~~~g~~pd~~t~~~ll~a~~~~ 141 (605)
.|++.+.+++..-|..++++|.+.
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 888888888888999999888654
No 333
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.61 E-value=69 Score=30.76 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHH---HHHHHhhcCC--CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 165 VCSSLVDMYGKCNDVDG---ARRVFDLMGC--RN-VVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223 (605)
Q Consensus 165 ~~~~Li~~y~~~g~~~~---A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 223 (605)
+...|+.+|...+..+. |..+.+.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 45566666666665443 4444444422 22 233333344455566677777777777654
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.43 E-value=25 Score=36.78 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=71.4
Q ss_pred HHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 039695 72 YVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIH 151 (605)
Q Consensus 72 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 151 (605)
..+.|+++.|.++-.+. .+..-|..|-.+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34678888888876553 4667789999999999999988888876544 566777777777777666665
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 039695 152 THIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 152 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 189 (605)
....+.| .. |.-..+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555 22 23334566778888888887665
No 335
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.39 E-value=77 Score=31.20 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC---hhHHHhHHHhhcccCchhhHHHHHHHHHHhC-----CCCcHhH
Q 039695 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN---QHMLASVINACASLGRLVSGKVAHGVVVRSG-----CEFNDVV 267 (605)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~ 267 (605)
+|-.+..++-+..++.+++.+-..-....+..|. .....++-.+....+.++.+.+.|+...+.. -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555544433322213331 1223345556666777777777776665521 1223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 039695 268 ASALVDMYAKCGSVNYSDKVFN 289 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~ 289 (605)
+-+|...|.+..++++|.-+..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhH
Confidence 7788888888888777664443
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.30 E-value=9 Score=36.13 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
+++-....|...|.+.+|.++.++++.++|-+...+..|++.|+..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445557889999999999999999999999999999999999999998888888877754
No 337
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.54 E-value=18 Score=29.90 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHh-cCCCCCc-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 416 RVDIAVEASNQLIE-SNQQVAN-AYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 416 ~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
++.+++.+++.+.+ -.|.... ....|.-++++.|+++.+.++.+.+.+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45566666766665 2233222 3334556677777777777777666553
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.10 E-value=20 Score=28.01 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 039695 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441 (605)
Q Consensus 393 m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (605)
+-.-|+ +.+..+.+.||++.+++..|.++++-+...-.+....|-.+
T Consensus 39 ~DlVP~--P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 39 YDLVPE--PKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp SSB-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred cccCCC--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 345677 88888888888888888888888888776544333355544
No 339
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.02 E-value=37 Score=26.84 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221 (605)
Q Consensus 142 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 221 (605)
...++|..+.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777778777777652 334444445566778899999955555556688888876654 47788888888888776
Q ss_pred HcC
Q 039695 222 YQS 224 (605)
Q Consensus 222 ~~~ 224 (605)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 665
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.80 E-value=21 Score=27.65 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 039695 111 IALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIE 155 (605)
Q Consensus 111 ~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 155 (605)
++.+-++.+....+.|+.....+.|+||-+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555566677788888888888888888888888877665
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.70 E-value=11 Score=32.96 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
+++|+.-|++++.++|+...++..++++|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4667777888889999999999999999987653
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.27 E-value=5.8 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHh
Q 039695 167 SSLVDMYGKCNDVDGARRVFD 187 (605)
Q Consensus 167 ~~Li~~y~~~g~~~~A~~~~~ 187 (605)
..|...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 343
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.20 E-value=1e+02 Score=31.54 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=64.3
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhH--HHhHHHhhccc
Q 039695 170 VDMYGKCNDVDGARRVFDLMGCR----NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHM--LASVINACASL 243 (605)
Q Consensus 170 i~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~a~~~~ 243 (605)
+...++.|+.+.+..+++.-... +...++ .+...+..|+.+ +++.+.+.| ..|+... -.+.+...+..
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~g-ad~~~~~~~g~tpLh~A~~~ 145 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARG-ADPDIPNTDKFSPLHLAVMM 145 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCC-CCCCCCCCCCCCHHHHHHHc
Confidence 44455666766666666543221 111112 222233445443 333333344 4443221 11233333445
Q ss_pred CchhhHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHhccCCCCcch---HHHHHHHHHHcCChhHHHHH
Q 039695 244 GRLVSGKVAHGVVVRSGCEFNDV--VASALVDMYAKCGSVNYSDKVFNRISNPSVVT---YTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 244 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l 318 (605)
|+.+..+. +.+.|..++.. ...+.+...+..|+.+-+..+++.-..++... .++.+..-+..|+. ++
T Consensus 146 ~~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~i 217 (413)
T PHA02875 146 GDIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DI 217 (413)
T ss_pred CCHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HH
Confidence 55443333 33444333221 11223334455677776666666555443322 12333333445554 34
Q ss_pred HHHHHHcCCCCCH
Q 039695 319 FNEMISRGIKPND 331 (605)
Q Consensus 319 ~~~m~~~g~~pd~ 331 (605)
.+-+.+.|..|+.
T Consensus 218 v~~Ll~~gad~n~ 230 (413)
T PHA02875 218 VRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHCCcCcch
Confidence 4555566766664
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.18 E-value=20 Score=36.35 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=71.3
Q ss_pred cCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 039695 309 YGLGRFSL-DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 309 ~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 387 (605)
.|+.-.|- .+|.-+....-.|+.+...+.| +.+.|.++.+.+.+.... + -+.....+..+++...-+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~-~-~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVE-K-IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchh-h-hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45544443 3444444433445555444433 456788888877776652 2 23444666777788888888888888
Q ss_pred HHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 388 ~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
.....|....-.++.+...-.......|-++++...+++++.++|+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 87766541111113333333444456677788888888888777543
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.93 E-value=70 Score=29.48 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=30.2
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCch------HHHHHH-HHHhcCChhHHHHHHHHHHhCC
Q 039695 411 SRLHGRVDIAVEASNQLIESNQQVANA------YVTLSN-TYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 411 ~~~~g~~~~a~~~~~~~~~~~p~~~~~------~~~l~~-~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
-...+++..|+.+|+++.....+++-. |..-.. ++.-.++.-.+...+++..+..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 356678889999999988765544321 111111 2222245545555565555543
No 346
>PRK12798 chemotaxis protein; Reviewed
Probab=74.72 E-value=1e+02 Score=31.19 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHhccCC----CCcchHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHH
Q 039695 278 CGSVNYSDKVFNRISN----PSVVTYTSMIVGA-AKYGLGRFSLDLFNEMISRGIKPN----DVTFVGVLHACSHSGLVD 348 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~ 348 (605)
.|+.++|.+.+..+.. +....|-+|+.+- ....++.+|+++|++..- .-|- +.....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888863 4455666776654 446788999999998765 2343 233444455567889999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHH-HHHHHHh---hcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHH
Q 039695 349 EGIQHLDSMYRKYGIIPDAKHYT-CVVDMLG---RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424 (605)
Q Consensus 349 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~---~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~ 424 (605)
++..+-....+++.-.|=...|. .++..+. ..-..+.-..++..|. |+.....|-.+...-...|+.+.|....
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d--~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMD--PERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcC--chhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 98888777777776666433332 2233333 3334555566666665 4433679999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhc-----CChhHHHHHHHHH
Q 039695 425 NQLIESNQQVANAYVTLSNTYALA-----GEWENVHSLRSEM 461 (605)
Q Consensus 425 ~~~~~~~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m 461 (605)
+++..+... ...-...+..|... .+.+++.+.+..+
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999987633 23333444555432 3455555555444
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.67 E-value=28 Score=31.16 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHhhcCCHHHH
Q 039695 313 RFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI--IPDAKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 313 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A 386 (605)
++|...|-++...+.--++.....|..-|. ..+.+++.+++.....-..- .+|+..+.+|+..|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555554443333333333333333 34555555555544332211 34455555555555555555554
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.27 E-value=13 Score=33.60 Aligned_cols=72 Identities=18% Similarity=0.124 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---hHHHHHH
Q 039695 371 TCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN---AYVTLSN 443 (605)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~ 443 (605)
+.-+..+.+.+.+++|+...+. ++.+|. +...-..|+..++..|++++|..-++-+-++.|+... .|..++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3446677888999999988765 555664 2567778889999999999999888888888887643 4444443
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.17 E-value=2.1 Score=41.16 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 039695 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
.|.+++|++.|......+.+....|.--.+++.+.+....|++=+..+++++|+....|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 46677777777654322222244555556667777777777777777888888777777777777777788888888887
Q ss_pred HHHhCCCccC
Q 039695 460 EMKRTGIHKE 469 (605)
Q Consensus 460 ~m~~~~~~~~ 469 (605)
...+.++...
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 7777776543
No 350
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.32 E-value=1.2e+02 Score=33.02 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC-------hhHHHHHHHHHHHc
Q 039695 168 SLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQ-------GHEALEMFREFNYQ 223 (605)
Q Consensus 168 ~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 223 (605)
++|-.+.|+|++++|.++..+... +....+-..+..|+.+.+ -++...-|++....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 466667788888888888833322 333455566666665422 22444455555443
No 351
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.10 E-value=1.9e+02 Score=32.32 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=87.2
Q ss_pred HHHHHHHHHhCCCC-------chHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 47 ASVHSEILKSGFLS-------NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKM 119 (605)
Q Consensus 47 ~~~~~~~~~~g~~~-------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 119 (605)
+.+...+.+.|++- |.. .-......||+++.|++.-..+- +...|..|...-.++|+.+-|...|++.
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~---tRF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDER---TRFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcc---hheeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 67777777777542 221 12334557899999988876664 5678999999999999999999888877
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHH
Q 039695 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTS 199 (605)
Q Consensus 120 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 199 (605)
+.- .-|--.|.-.|+.++-.++...+..+. |... .....+| .|++++-.++++.-...+..-.+
T Consensus 699 knf---------ekLsfLYliTgn~eKL~Km~~iae~r~---D~~~-~~qnalY--l~dv~ervkIl~n~g~~~laylt- 762 (1202)
T KOG0292|consen 699 KNF---------EKLSFLYLITGNLEKLSKMMKIAEIRN---DATG-QFQNALY--LGDVKERVKILENGGQLPLAYLT- 762 (1202)
T ss_pred hhh---------hheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH-HHHHHHH--hccHHHHHHHHHhcCcccHHHHH-
Confidence 552 222223445577776666655554332 2111 1111112 35666666666655443221111
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 039695 200 IIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
-..+|.-++|.++..+...
T Consensus 763 ----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 763 ----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred ----HhhcCcHHHHHHHHHhhcc
Confidence 1224555566666555544
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.98 E-value=15 Score=28.26 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
...+++.++.+|+|..+-..++..+...|++++|.+.+-.+.++..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3456666778888888888888888888888888888888776543
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.23 E-value=1.7e+02 Score=31.48 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHH--HH-HHhCCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHHcC----
Q 039695 144 LITGKQIHTHIETFGFQYNLVVCSSLV--DM-YGKCNDVDGARRVFDLMGC--------RNVVSWTSIIVAHAQNA---- 208 (605)
Q Consensus 144 ~~~a~~~~~~~~~~g~~~~~~~~~~Li--~~-y~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g---- 208 (605)
...+.+.++...+.|. ........++ .. +....|.+.|...|..... -+..+.+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 4568888888887762 2222222222 22 4466788888888877632 13345556666676643
Q ss_pred -ChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcc-cCchhhHHHHHHHHHHhCC
Q 039695 209 -QGHEALEMFREFNYQSRDRPNQHMLASVINACAS-LGRLVSGKVAHGVVVRSGC 261 (605)
Q Consensus 209 -~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~ 261 (605)
+.+.|+.+|.+....| .|+...+...+.-... ..+...|.+++....+.|.
T Consensus 307 ~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred ccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 5566888888877776 5666665555444333 2345677777777777663
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=1.9e+02 Score=32.01 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=43.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCC
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES-NQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~y~~~g~ 450 (605)
++..+.+..+.+++..+.+..... + +..|-.+++.+...+.++.-.+...++++. ...+.-.-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~--p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-D--PSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-C--hHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 344455666777777777666522 4 778888888888887776666666555541 11111222345556655543
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.52 E-value=18 Score=26.73 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=24.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHH
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKL 389 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 389 (605)
+....++|+..|...+++..-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444322233 34455556666666666655554
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.38 E-value=56 Score=29.27 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=51.9
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChH
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPD---AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
..|++++|..-|...+....-.|. ...|..-..++.+.+.++.|++-..+ +...|. .......-..+|.+...++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHH
Confidence 345555555555544322111111 23344445566677777777776554 333343 1122223345677788899
Q ss_pred HHHHHHHHHHhcCCCC
Q 039695 419 IAVEASNQLIESNQQV 434 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~ 434 (605)
.|+.-|+++++.+|..
T Consensus 186 ealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 186 EALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHhCcch
Confidence 9999999999999975
No 357
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=36 Score=32.99 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 039695 368 KHYTCVVDMLGRTGRLDEAYKLAKSI-Q---VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443 (605)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (605)
.+|--=.+-|.+..++..|...|.+- . ..|+.+.+.|+.-..+-...|++..++.-..+++..+|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444456788899999999998763 2 3566567788888888888999999999999999999999999998888
Q ss_pred HHHhcCChhHHHHHHHH
Q 039695 444 TYALAGEWENVHSLRSE 460 (605)
Q Consensus 444 ~y~~~g~~~~a~~~~~~ 460 (605)
++....++++|....++
T Consensus 162 c~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888886666554443
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.21 E-value=11 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887644
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.71 E-value=11 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 039695 415 GRVDIAVEASNQLIESNQQVANAYVTLSN 443 (605)
Q Consensus 415 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (605)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888899988888877777766554
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.60 E-value=1.5e+02 Score=29.68 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=51.7
Q ss_pred hhHHHHH---HHHHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 039695 401 PLLWGTL---LSASRLHGRVDIAVEASNQLIESNQQ-VANAYVTLSNTYA-LAGEWENVHSLRSEMKR 463 (605)
Q Consensus 401 ~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 463 (605)
...|.+| +..+.+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++-..++.+....
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5555554 45678899999999999999999999 8888888888887 77888888888887655
No 361
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.12 E-value=86 Score=26.57 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 039695 297 VTYTSMIVGAAKYGL-GRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342 (605)
Q Consensus 297 ~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 342 (605)
.+|.+++.+..+..- ---+..+|.-|++.+.++++.-|..++.+|.
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344444444433322 1223444444444444444444444444443
No 362
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.45 E-value=1.3e+02 Score=30.44 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhc--cCcHHHHHHHHHHHHH
Q 039695 306 AAKYGLGRFSLDLFNEMISRGIKPNDV--TFVGVLHACSH--SGLVDEGIQHLDSMYR 359 (605)
Q Consensus 306 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~--~g~~~~a~~~~~~m~~ 359 (605)
+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33578888899999888876 555554 34444455543 4567788888887643
No 363
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.22 E-value=69 Score=33.51 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC
Q 039695 269 SALVDMYAKCGSVNYSDKVFNRIS 292 (605)
Q Consensus 269 ~~li~~y~~~g~~~~A~~~~~~~~ 292 (605)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356778999999999999998886
No 364
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.06 E-value=1.1e+02 Score=28.45 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=49.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 406 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..-.++...|++-++++.-.+++...|.|..+|..-+.+.+..=+.++|..-|.+..+...
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 3345556778888999999999999999998998888888888888888888888776543
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.93 E-value=53 Score=26.85 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 039695 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 374 (605)
+..+-++.+..-.+.|++......|+||.+.+++..|.++|+.+..+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44455556666678899999999999999999999999999988543 333344565554
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.76 E-value=1.4e+02 Score=32.49 Aligned_cols=181 Identities=12% Similarity=0.160 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHhccCC-CCc----------chHHHHHHHHHHcCChhHHHH
Q 039695 252 AHGVVVRSGCEFND---VVASALVDMYAKCGSVNYSDKVFNRISN-PSV----------VTYTSMIVGAAKYGLGRFSLD 317 (605)
Q Consensus 252 ~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~----------~~~~~li~~~~~~g~~~~A~~ 317 (605)
++..|.+.--.|++ .+...++-.|....+++...++.+.++. ||. ..|.--++---+-|+-++|+.
T Consensus 185 ~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~ 264 (1226)
T KOG4279|consen 185 YLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALN 264 (1226)
T ss_pred HHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHH
Confidence 34445443333333 3444455556666677777777666653 321 112222222223467778888
Q ss_pred HHHHHHHc--CCCCCHHH-----HHH--HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcC-CHHHHH
Q 039695 318 LFNEMISR--GIKPNDVT-----FVG--VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG-RLDEAY 387 (605)
Q Consensus 318 l~~~m~~~--g~~pd~~t-----~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~ 387 (605)
..-.|.+. .+.||... |-- +-+.|...+..+.|.+.|++. +.+.|+...--.+...+...| .++...
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens~ 341 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENSL 341 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccchH
Confidence 87777663 35666532 221 223456667788888888855 467787544333333333333 233222
Q ss_pred HHH------HhCC-CCCC--chhhHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 388 KLA------KSIQ-VDPD--GGPLLW--GTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 388 ~~~------~~m~-~~p~--~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
++- ..+. .+.. .-..-| ...+.+-.-.+++..|.++.+.|.++.|+..
T Consensus 342 Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 342 ELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 221 1111 1110 001112 2345566678899999999999999998754
No 367
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.11 E-value=2e+02 Score=29.89 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=22.5
Q ss_pred CChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 039695 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 278 (605)
.|.....+++..+.....+.-.+.+-.+|+..| .+-..+..++..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 344445555555555555555555555554443 1223334444444444
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.00 E-value=75 Score=24.87 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325 (605)
Q Consensus 246 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 325 (605)
.++|.-|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444443321 22222223445667788888888888888888888877644 3556666666666677666
Q ss_pred CCCCCHHHH
Q 039695 326 GIKPNDVTF 334 (605)
Q Consensus 326 g~~pd~~t~ 334 (605)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3333343
No 369
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.91 E-value=1.9e+02 Score=29.61 Aligned_cols=112 Identities=10% Similarity=-0.034 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhC---CC-CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 039695 110 QIALLLFQKMLGN---LV-WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRV 185 (605)
Q Consensus 110 ~~a~~~~~~m~~~---g~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 185 (605)
++...++...... |+ ..+......++..+ .|+...+..+++.+...+-.. ..+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 4555555554321 33 34444444444433 577777777776655431111 12222222
Q ss_pred Hhhc---CCCChhhHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhh
Q 039695 186 FDLM---GCRNVVSWTSIIVAHAQ---NAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240 (605)
Q Consensus 186 ~~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 240 (605)
+... ..++......+++++.+ ..+++.|+..+..|.+.| ..|....-..+..++
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G-~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAG-EDPLFIARRLVIIAS 275 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 2221 11222334455666655 478999999999999888 666655444444443
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.70 E-value=1.4e+02 Score=28.03 Aligned_cols=185 Identities=10% Similarity=0.099 Sum_probs=105.3
Q ss_pred hCCCCchHHHHHHHHHH-HcCCChhHHHHHHhcCCC----CCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhC---CC
Q 039695 56 SGFLSNTFTLNHLINCY-VRLKKTQVARQLFDEMLE----PNV---VSYTSLMAGYINMGQPQIALLLFQKMLGN---LV 124 (605)
Q Consensus 56 ~g~~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~----~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~ 124 (605)
++-.||+..-|..-+.= .+...+++|+.-|++..+ ... .+.-.+|..+.+.|++++.++.|.+|+.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567766655432221 134578888888887732 222 33455778888889999888888887532 12
Q ss_pred CC--ChhhHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC------
Q 039695 125 WP--NEFTFATVIKACSMLADLITGKQIHTHIETF----G-FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC------ 191 (605)
Q Consensus 125 ~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------ 191 (605)
.. ...+.|+++.-.....+.+.-..+++.-.+. . -..=-.+-+.|...|...|++....+++.++..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 21 3446677777666666655555555433221 0 001112334566777777777777777776632
Q ss_pred --C-------ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc
Q 039695 192 --R-------NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241 (605)
Q Consensus 192 --~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 241 (605)
. =...|..=|+.|....+-.+-..+|++........|.+.. ..+++-|.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECG 237 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECG 237 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcC
Confidence 0 1235666677777777766666677765544323444433 34455554
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.00 E-value=69 Score=30.33 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=43.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh---
Q 039695 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK--- 277 (605)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--- 277 (605)
|++++..+++.+++...-+--+.. -+.........|-.|.+.+.+....++-..-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 566777777777766554433222 1122222333333455666666555555554443222233335555555543
Q ss_pred --cCCHHHHHHHH
Q 039695 278 --CGSVNYSDKVF 288 (605)
Q Consensus 278 --~g~~~~A~~~~ 288 (605)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 35555555544
No 372
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.96 E-value=2.6e+02 Score=30.75 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISNPSV 296 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 296 (605)
.+...|+..|...+++.+|.+.+-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3445589999999999999999988876554
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.47 E-value=1.1e+02 Score=31.27 Aligned_cols=126 Identities=9% Similarity=0.041 Sum_probs=85.3
Q ss_pred ccCcHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHH
Q 039695 343 HSGLVDEGI-QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV 421 (605)
Q Consensus 343 ~~g~~~~a~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~ 421 (605)
..|++-.|- +++..+ +.+.-.|+.... ....+...|.++.+...+......-.....+...++......|+.+.|.
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 456666554 455544 555555664333 3344677899999999987654111111567788899999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 039695 422 EASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPG 471 (605)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 471 (605)
...+.++..+-.++.....-+..--..|-+|++.-.|+++.....+.+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999998776665554444444456688999999999987765544443
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=1.4e+02 Score=27.56 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=31.0
Q ss_pred hhcCCHHHHHHHHHhCC-CCCCchhhHHHH---HHH--HHH-HcCChHHHHHHHHHHHhcCCCCCc
Q 039695 378 GRTGRLDEAYKLAKSIQ-VDPDGGPLLWGT---LLS--ASR-LHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 378 ~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~---ll~--~~~-~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
+..+++.+|+++|+++. ..-+.+..-|.. ++. .|. ...+.-.+...+++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 45566777777776643 111111333332 111 122 235666777778888888886443
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.25 E-value=35 Score=31.42 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=48.0
Q ss_pred CHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 382 RLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 382 ~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
+++.|.+-+.+ +...|. .+.-|..=+-++.+..+++.+..--.+++++.|+.......|+........+++|...+.+
T Consensus 25 ~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444443332 334454 1234444555555666666666666677777777666777777777777777777777666
Q ss_pred HHh
Q 039695 461 MKR 463 (605)
Q Consensus 461 m~~ 463 (605)
..+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 633
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.40 E-value=28 Score=36.37 Aligned_cols=97 Identities=19% Similarity=0.116 Sum_probs=66.8
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCchhhHHHHHHHHHHHcCChH
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVVDMLGRTGRLDEAYKLAKSI-Q-VDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
..|+...|...+.... ...|. ......|.+.+.+.|...+|-.++.+. . .... +.++-++.+++....+++
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se--pl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE--PLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC--chHHHhcchhHHHHhhhH
Confidence 3577777777766553 44443 223445666677777777887776552 2 1223 667888888888889999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 039695 419 IAVEASNQLIESNQQVANAYVTLSNT 444 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (605)
.|++.|+++++++|+++..-..|..+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999888776665444
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.87 E-value=1.5e+02 Score=30.21 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=7.4
Q ss_pred HHHhCCCHHHHHHHHh
Q 039695 172 MYGKCNDVDGARRVFD 187 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~ 187 (605)
..+..|+.+-+..+++
T Consensus 141 ~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 141 LAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344555554444444
No 378
>PF15469 Sec5: Exocyst complex component Sec5
Probab=57.90 E-value=1.4e+02 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=10.6
Q ss_pred HHHHhccCcHHHHHHHHHHH
Q 039695 338 LHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m 357 (605)
|.-|...|+++.+...|...
T Consensus 93 L~~~i~~~dy~~~i~dY~ka 112 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKA 112 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHH
Confidence 44445555555555555544
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.84 E-value=1.5e+02 Score=27.08 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKHYTCV 373 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 373 (605)
|.+.-++.+.+.+...+|+...++-++.. +-|.-+-..++.-++-.|++++|..-++-.. .+.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34455677777888888888887776642 2244555567777888888888877666542 33443 4555555
Q ss_pred HH
Q 039695 374 VD 375 (605)
Q Consensus 374 i~ 375 (605)
|+
T Consensus 79 ir 80 (273)
T COG4455 79 IR 80 (273)
T ss_pred HH
Confidence 54
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.38 E-value=47 Score=29.77 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQ 432 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 432 (605)
+.++..++.++...|+.++|.+..+++..+-|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555555555555
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.46 E-value=89 Score=23.94 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCh-hHHHHHHHHH
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV--ANAYVTLSNTYALAGEW-ENVHSLRSEM 461 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~-~~a~~~~~~m 461 (605)
....-.+...+...|+++.|.+.+-.+++.+++. ..+-..|+.++.-.|.- ..+.+.+++|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5566667777788888888888877777766443 44666777777777763 3455555544
No 382
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.83 E-value=54 Score=26.16 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 195 VSWTSIIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999998876
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.62 E-value=4e+02 Score=30.28 Aligned_cols=131 Identities=11% Similarity=0.107 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 039695 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMY 275 (605)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 275 (605)
-|..|+.-|...|..++|++++.+..... -.-|.. ..+.-..+.+.+.+.+-+ +..+.-... .+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~-~~~d~~-------------~~~~~e~ii~YL~~l~~~-~~~Li~~y~-~w 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED-SDTDSF-------------QLDGLEKIIEYLKKLGAE-NLDLILEYA-DW 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc-cccccc-------------hhhhHHHHHHHHHHhccc-chhHHHHHh-hh
Confidence 57889999999999999999999886532 101111 111112233444444322 111110000 11
Q ss_pred HhcCCHHHHHHHHhccCCCCcchHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 039695 276 AKCGSVNYSDKVFNRISNPSVVTYT-SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342 (605)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 342 (605)
.-..+.+...++|..-.+....+.+ .-+-.|......+-+..+++.+....-.++....+.++.-|.
T Consensus 570 vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 570 VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2234455555555541110111111 123345666677777788888777655666666666665554
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.52 E-value=36 Score=21.98 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=11.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 039695 303 IVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~ 324 (605)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555554
No 385
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.22 E-value=17 Score=29.96 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=25.8
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
-..|.-.+|..+|.+|.+.|-+||. |+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999985 56666654
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.19 E-value=2.1e+02 Score=27.09 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=44.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 264 NDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 264 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
++.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-.+++ -|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 6678888889999999999999887655444433332233322223333222 222222233 2444
Q ss_pred cCcHHHHHHHHHHHHHh
Q 039695 344 SGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 344 ~g~~~~a~~~~~~m~~~ 360 (605)
.+++..|...++...++
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 57778787777666543
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.95 E-value=1.4e+02 Score=28.44 Aligned_cols=85 Identities=9% Similarity=0.036 Sum_probs=45.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 039695 100 MAGYINMGQPQIALLLFQKMLGN--LVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK-- 175 (605)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-- 175 (605)
|.+++..+++.+++...-+--+. .++|...-.. |-.|.+.+....+.++-..-....-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67777777777776654443221 2333333222 22356666666666666555543222233346666555544
Q ss_pred ---CCCHHHHHHHH
Q 039695 176 ---CNDVDGARRVF 186 (605)
Q Consensus 176 ---~g~~~~A~~~~ 186 (605)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666665
No 388
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.43 E-value=4.4e+02 Score=30.44 Aligned_cols=182 Identities=12% Similarity=0.006 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhh
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINAC 240 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 240 (605)
+|..+-.+.+..+...+.- ....+...+..+|...-...+.++.+.+..+.. .... ..++...-.....++
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l----~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA----TDENREVRIAVAKGL 766 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh----cCCCHHHHHHHHHHH
Confidence 4445555555555433211 122334445555555545555555554433221 1111 234555555555555
Q ss_pred cccCchhh-HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHhccCCCCcchHHHHHHHHHHcCChhHHHHH
Q 039695 241 ASLGRLVS-GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD-KVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 241 ~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
...+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 55554332 2233333332 446677777777777777655442 33444445565555556666666654 345555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 039695 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMY 358 (605)
Q Consensus 319 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 358 (605)
+..+.+ .||...-...+.++.+......+...+....
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555553 3555555566666666533345555555553
No 389
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.35 E-value=3.6e+02 Score=29.43 Aligned_cols=57 Identities=16% Similarity=0.366 Sum_probs=34.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC---CCCC-chHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESN---QQVA-NAYV-----TLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~~-----~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
++..-.-.|+..+............ |+.. ..|. .+.+.|...|+.++|.....+...
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4444333677777666555554432 3222 2342 455567888999999998877643
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.07 E-value=76 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
.-|..++.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888888899999998888876
No 391
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.03 E-value=97 Score=25.86 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHhhcCCH---HHHHHHHHhCC--CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 364 IPDAKHYTCVVDMLGRTGRL---DEAYKLAKSIQ--VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~--~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.++..+-..+..++.+..+. .+.+.+++++- ..|+......--|.-++.+.++++.+.+..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 45555555566666665543 34455555543 234333444455667888999999999999999999998764
No 392
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=50.57 E-value=3.4e+02 Score=28.88 Aligned_cols=177 Identities=10% Similarity=-0.023 Sum_probs=96.6
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHH
Q 039695 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGCRN---VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238 (605)
Q Consensus 162 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 238 (605)
+..+|+.-++.-.+.|+.+.+.-+|++...|- ..-|--.+.-.-..|+.+-|-.++....+-- .+-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 45678888888888899988888888875432 2234444444444577777776666554432 2222222211222
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH---HHHhccCC--CCcchHHHHHHHHHH-----
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD---KVFNRISN--PSVVTYTSMIVGAAK----- 308 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~~~~----- 308 (605)
-+-..|+...|..+++.+...- +.-+.+-..-+.+..+.|..+.+. .++....+ .+....+.+..-+++
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 2334678888888888777654 333334444456666777777666 33332221 233333333332222
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
.++.+.|..++.+|.+. ++++...|..++.-+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 35566666666666554 444445555554443
No 393
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=50.52 E-value=1.9e+02 Score=25.88 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 039695 133 TVIKACSMLADLITGKQIHTHIETFGF--------------QYNLVVCSSLVDMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 133 ~ll~a~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 188 (605)
+++-.|-+..++.+++++++.+.+..+ .+--.+.|.-...+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344456666667777777766654321 22233455555666666666666666653
No 394
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.41 E-value=1.1e+02 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHcCChH-------HHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 402 LLWGTLLSASRLHGRVD-------IAVEASNQLIESN--QQV----ANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..+--+...|+..|+.+ .|.+.|+++.+.+ |.. ......++..+.+.|+.++|.+.|.++...+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34555555666666643 4555555555543 222 24666788999999999999999999977543
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.86 E-value=35 Score=25.32 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHHH
Q 039695 414 HGRVDIAVEASNQLIESNQQVAN---AYVTLSNTYALAGEWENVHSL 457 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~ 457 (605)
..+.+.|+..++++++..++.+. ++-.|+.+|+..|++.++.++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666655444333 233455566666666665554
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.54 E-value=1.9e+02 Score=25.79 Aligned_cols=93 Identities=10% Similarity=0.048 Sum_probs=53.8
Q ss_pred hcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCC------
Q 039695 188 LMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGC------ 261 (605)
Q Consensus 188 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------ 261 (605)
+-+++-.+.|-....+-++.-..+++-+.|-- ..=.+++-.|-+.-++.+++++++.+.+..+
T Consensus 101 d~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG-----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 101 DSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG-----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred cccccCCCCHHHHHHHHhcCCccchhhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33334445555555555554444443333211 1123556667777788888888887766422
Q ss_pred --------CCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 039695 262 --------EFNDVVASALVDMYAKCGSVNYSDKVFNRI 291 (605)
Q Consensus 262 --------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 291 (605)
.+.-.+.|.-...+.++|.++.|..++++-
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233345666777777888888887777743
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.11 E-value=3.3e+02 Score=28.36 Aligned_cols=277 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH------hccCChHHHHHHHH
Q 039695 79 QVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC------SMLADLITGKQIHT 152 (605)
Q Consensus 79 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~------~~~~~~~~a~~~~~ 152 (605)
+.|++.++-..+-+...+...-.+.--..+.+....+|++..+ ..|+...++.-|..| .+...+.....+++
T Consensus 268 ~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~ 345 (568)
T KOG2396|consen 268 DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFR 345 (568)
T ss_pred HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHh-hcCCCChhhHHHHHHHHHHc--CChhHHHHHHHHHHHcCCCC
Q 039695 153 HIETFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFD-LMGCRNVVSWTSIIVAHAQN--AQGHEALEMFREFNYQSRDR 227 (605)
Q Consensus 153 ~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~ 227 (605)
...+.+ -+.....|..+.-++.+.....++-..+. +.-..|...|-.-++...+. .---.-.++|......- ..
T Consensus 346 ~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~-~s 424 (568)
T KOG2396|consen 346 KAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV-CS 424 (568)
T ss_pred HHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh-cc
Q ss_pred CChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039695 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAA 307 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 307 (605)
+-...+++.. -...-+...-..+.....+.+-+.....-+.+++.+-+.|-..+|+.+|..+....+.+.
T Consensus 425 ~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl-------- 494 (568)
T KOG2396|consen 425 ELLISWASAS--EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSL-------- 494 (568)
T ss_pred hhHHHHHHHh--hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccH--------
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 039695 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 308 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 387 (605)
.+|++|++ +..+..+.+ +.-+..+++.|...+| .|+..|.-.+..=...|+.+.+-
T Consensus 495 ---------~l~r~miq--~e~~~~sc~-----------l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~ 550 (568)
T KOG2396|consen 495 ---------DLFRKMIQ--FEKEQESCN-----------LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCG 550 (568)
T ss_pred ---------HHHHHHHH--HHhhHhhcC-----------chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCccccc
Q ss_pred HHHHh
Q 039695 388 KLAKS 392 (605)
Q Consensus 388 ~~~~~ 392 (605)
.++.+
T Consensus 551 ~~~~r 555 (568)
T KOG2396|consen 551 QIYWR 555 (568)
T ss_pred HHHHH
No 398
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=47.77 E-value=64 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCChHHHHHH--HHHHHhcCC
Q 039695 404 WGTLLSASRLHGRVDIAVEA--SNQLIESNQ 432 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p 432 (605)
|-++.-.+-..|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34445555566666666666 335444444
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.70 E-value=65 Score=24.82 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHcCChHHHHHHHHHHHhcCCC----C-----CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 412 RLHGRVDIAVEASNQLIESNQQ----V-----ANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.+.|++..|.+.+.+..+.... . ..+...++..+...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776666666543211 1 12344577788899999999999988765
No 400
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.21 E-value=2.8e+02 Score=27.02 Aligned_cols=83 Identities=16% Similarity=-0.016 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHH
Q 039695 346 LVDEGIQHLDSMYRKYGI---IPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 346 ~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
-.+.+.+.|+.......- ..++.....+.....+.|..++-..+++.....++ ......++.+.....+.+...+
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~--~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTS--PEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTST--HHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCC--HHHHHHHHHhhhccCCHHHHHH
Confidence 467788888888653111 33555666667777788887766666666554555 7788889999998999999889
Q ss_pred HHHHHHhc
Q 039695 423 ASNQLIES 430 (605)
Q Consensus 423 ~~~~~~~~ 430 (605)
+++.++..
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 99998884
No 401
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.05 E-value=1.8e+02 Score=30.74 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQ-VANAYVTLSNTYA-LAGEWENVHSLRSEMKR 463 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 463 (605)
+....+.|-+..|.+..+-++.++|. ||.....+++.|+ ++.+++-..++++..+.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34567788899999999999999988 8888888888887 66778878888777643
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=46.66 E-value=57 Score=31.07 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 166 CSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFN 221 (605)
Q Consensus 166 ~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 221 (605)
.+.....|..+|.+.+|.++-+.... -+...|-.++..++..|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455677788888888887777655 345567778888888888777777666664
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.61 E-value=1.3e+02 Score=24.69 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 419 IAVEASNQLIES--NQQVANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 419 ~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
.+.++|+.|... +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888764 455566888899999999999999998864
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.41 E-value=82 Score=20.73 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666677777777777777666666665553
No 405
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.67 E-value=28 Score=28.81 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=25.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039695 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138 (605)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~ 138 (605)
..|.-..|-.+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667889999999999999875 67777654
No 406
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.31 E-value=1.6e+02 Score=23.42 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=35.4
Q ss_pred chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 245 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
..++|..|.+.+...+. ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 222233333344555666666644433444466666654432 345555555555555544
Q ss_pred c
Q 039695 325 R 325 (605)
Q Consensus 325 ~ 325 (605)
+
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 407
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.24 E-value=3.9e+02 Score=27.77 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=74.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCChhH-------HHhHHH-hhcccCchhhHHHHHHHHHHhCCCCcHh--HHHH
Q 039695 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQHM-------LASVIN-ACASLGRLVSGKVAHGVVVRSGCEFNDV--VASA 270 (605)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-------~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 270 (605)
+.+-.-.|++.+|++-..+|.+--...|.... .-.++. -|...+.++.|+.-|....+.--..|.. .-..
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 34445579999999999999764423344211 112222 3456678888888777776644333433 3344
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCcchHHHH--------HHHH--HHcCChhHHHHHHHHHHH
Q 039695 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSM--------IVGA--AKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 271 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~~--~~~g~~~~A~~l~~~m~~ 324 (605)
+.-.|.+.|+.++-.++++.+..+|..++.+- +.|+ ...+++.||..++.+-.+
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 66778889998888888888887765544321 1111 234556666666555443
No 408
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=44.06 E-value=3e+02 Score=26.44 Aligned_cols=113 Identities=10% Similarity=0.079 Sum_probs=72.2
Q ss_pred cCChhHHHHHHHHHHh-CCCCCChhhHHHHHHHHhc-cC-ChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCCHHH
Q 039695 106 MGQPQIALLLFQKMLG-NLVWPNEFTFATVIKACSM-LA-DLITGKQIHTHIETF-GFQYNLVVCSSLVDMYGKCNDVDG 181 (605)
Q Consensus 106 ~g~~~~a~~~~~~m~~-~g~~pd~~t~~~ll~a~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~ 181 (605)
+....+|+.+|+.... ..+--|......+++.... .+ .+..--++.+.+... |-.++..+....+..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3344567777763322 2344466666667766654 22 222223333444332 346777788888899999999999
Q ss_pred HHHHHhhcCC-----CChhhHHHHHHHHHHcCChhHHHHHHH
Q 039695 182 ARRVFDLMGC-----RNVVSWTSIIVAHAQNAQGHEALEMFR 218 (605)
Q Consensus 182 A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (605)
-.++++.... .|...|..+|..-.+.|+..-..++..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8888887543 577889999999999998765544443
No 409
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.73 E-value=4.4e+02 Score=28.31 Aligned_cols=109 Identities=12% Similarity=-0.007 Sum_probs=58.0
Q ss_pred hhHHHHHHhcCCC-CChhhHHHHHH----H-HHhcCChhHHHHHHHHHHh-------CCCCCChhhHHHHHHHHhccC--
Q 039695 78 TQVARQLFDEMLE-PNVVSYTSLMA----G-YINMGQPQIALLLFQKMLG-------NLVWPNEFTFATVIKACSMLA-- 142 (605)
Q Consensus 78 ~~~A~~~f~~m~~-~~~~~~~~li~----~-~~~~g~~~~a~~~~~~m~~-------~g~~pd~~t~~~ll~a~~~~~-- 142 (605)
...|.+.++.... -++..-..+.. + +....+++.|+.+|+.+.+ .| +......+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3456666665533 23333222222 2 4456778888888888766 44 3334445555554432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCCHHHHHHHHhhcC
Q 039695 143 ---DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK-CNDVDGARRVFDLMG 190 (605)
Q Consensus 143 ---~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~~~~m~ 190 (605)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|....
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 5566777777777776 3444333333322222 234566666666653
No 410
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.35 E-value=20 Score=36.42 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=67.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHH-HHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcC
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCV-VDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g 415 (605)
+......+.++.|..++.+++ .+.|+...|-+. ..++.+.+.+..|+.=+.. +...|. ....|.-=..+|...+
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 445556778899999988886 678875554333 4778888888888765544 444454 1335555566777788
Q ss_pred ChHHHHHHHHHHHhcCCCCCc
Q 039695 416 RVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.+.+|...|+....+.|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 888899999998899998864
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.94 E-value=99 Score=27.67 Aligned_cols=51 Identities=16% Similarity=-0.002 Sum_probs=30.8
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (605)
...+.+......+.+.+.....|++.+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444444444333355677777777777777777777777666654
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.19 E-value=83 Score=20.71 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=14.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 039695 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135 (605)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll 135 (605)
+.|-..++..++++|.+.|...+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444555554444444444444333
No 413
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.75 E-value=1.9e+02 Score=29.73 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCccCCc--eeEEEeCCEEeeeecccc-Cc--cchHHHHHHHHHHHHHHHHCCccCCCccc--ccccc
Q 039695 453 NVHSLRSEMKRTGIHKEPG--CSWVEIRDQTYAFYAGNA-LF--ERGSEVLSLLRELERKMKERGYVGGKTGL--VFVDV 525 (605)
Q Consensus 453 ~a~~~~~~m~~~~~~~~~~--~s~~~~~~~~~~f~~~~~-~~--~~~~~~~~~l~~l~~~m~~~g~~pd~~~~--~~~~~ 525 (605)
++..+++.+...|+....| .||.. .|. .. .++-.-++..++|.....+.|+..|..+| ....+
T Consensus 152 DarlL~e~~~a~G~~a~EGG~ISYnl----------PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL 221 (480)
T TIGR01503 152 DARLLAEIILAGGFTSFEGGGISYNI----------PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL 221 (480)
T ss_pred cHHHHHHHHHHcCCCccCCCcceecc----------ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc
Confidence 4677778888888754432 44432 222 22 23333445556777777788887675443 22222
Q ss_pred chhhhhhhhhhhhHHHHHHHcccCCCCCCcEEEEecccccCCch
Q 039695 526 EDEAREEIVGLHSERLALAFGLISIPKGITIRIMKNLRMCRDCH 569 (605)
Q Consensus 526 ~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (605)
-...-...+....-.+|...|+.+.. =-+..||...
T Consensus 222 vPPsisiav~ilE~Lla~eqGVksis--------vgy~Q~Gn~~ 257 (480)
T TIGR01503 222 VPPSISNAIGIIEGLLAAEQGVKNIT--------VGYGQVGNLT 257 (480)
T ss_pred cChHHHHHHHHHHHHHHHHcCCeEEE--------eccccCCChH
Confidence 22233334444555566677765433 3456777754
No 414
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.53 E-value=6.1e+02 Score=29.29 Aligned_cols=248 Identities=14% Similarity=0.052 Sum_probs=142.3
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH-HHHHHHHhhcCCCChhhHHHHHHHH
Q 039695 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV-DGARRVFDLMGCRNVVSWTSIIVAH 204 (605)
Q Consensus 126 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~m~~~~~~~~~~li~~~ 204 (605)
||...-...+..+...+..+ +...+..+.+ .++..+-...+.++.+.+.. .....+...+..+|...-...+..+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 56666666666666666543 3344444443 45555655665555544321 1122222333445655545555555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH-
Q 039695 205 AQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNY- 283 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~- 283 (605)
...+..+ .. .+-... ..+|...-...+.++.+.+..+. + ...--.++..+-...+..+...+..+.
T Consensus 709 ~~~~~~~-~~-~l~~~L----~D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL~~~~~~~~~ 775 (897)
T PRK13800 709 RALRAGD-AA-LFAAAL----GDPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGLATLGAGGAP 775 (897)
T ss_pred HhhccCC-HH-HHHHHh----cCCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHHHHhccccch
Confidence 5443222 12 232332 24566555666777776654332 2 222235677777777888877776443
Q ss_pred H-HHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 039695 284 S-DKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362 (605)
Q Consensus 284 A-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 362 (605)
+ ..+..-+.++|...-.+.+.++.+.|....+...+..+.. .+|...-...+.++...+.. ++...+..+..
T Consensus 776 ~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~--- 848 (897)
T PRK13800 776 AGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT--- 848 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc---
Confidence 2 3344444568888888889999999987666555555553 34666666677888777764 45555554532
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 039695 363 IIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPD 398 (605)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 398 (605)
.|+..+-...+.++++.+....+...+......++
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d 883 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSD 883 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCC
Confidence 57777777888888886444566666666544555
No 415
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.51 E-value=3.6e+02 Score=26.56 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=23.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCC--CCcHHHH--HHHHHHHhhcCCHHHHHHHHHh
Q 039695 343 HSGLVDEGIQHLDSMYRKYGI--IPDAKHY--TCVVDMLGRTGRLDEAYKLAKS 392 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~--~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 392 (605)
+.++.++|.++++++.++... .|+...| +.....+...|++.++.+.+.+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344566666666655443322 2333332 2233334445555555555443
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.38 E-value=83 Score=31.89 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=14.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
.+|..++-+|.-.+|+.+|.++|..+
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.33 E-value=1.2e+02 Score=31.88 Aligned_cols=137 Identities=13% Similarity=0.006 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCCCchhh
Q 039695 327 IKPNDVTFVGVLHACSHSG--LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR-TGRLDEAYKLAKSI-QVDPDGGPL 402 (605)
Q Consensus 327 ~~pd~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p~~~~~ 402 (605)
-.|+..|.-.++.-....- .-+-|-.++..| ++ .+.|--...| +...|-| .|+...|...+... ...|....+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 3466666666554443322 234455555555 22 3333322222 2334444 58888888776553 334433345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
....|.......|-...|-.++.+.+.+.-..+-++..++++|....+.+.|.+.|+...++..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 5666777777778888899999999998877788999999999999999999999988876554
No 418
>PRK10941 hypothetical protein; Provisional
Probab=40.85 E-value=2e+02 Score=27.39 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 371 TCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
+.+-.+|.+.++++.|+...+.+. ..|+ ++.-|.--.-.|.+.|....|..-++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 456667888999999999888753 4554 256677777778999999999999999999999887643
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.78 E-value=53 Score=30.12 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=42.2
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 376 MLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
+..+.|+.+.|.+++.+.. ..|+ ....|-.+...-.+.|+.+.|.+.+++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4556777777777777643 2333 2557777777777888888888888888888877654
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.56 E-value=46 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
.-.+|.||.+.|++++|.++.+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34568888888888888888887765
No 421
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.12 E-value=4.5e+02 Score=27.00 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC--CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 371 TCVVDMLGRTGRLDEAYKLAKSIQ--VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
..|+.-|.-.|.+.||...++++. +-.. ..++.+++-+..+.|+-+.-..+++.....
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhH--EvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHH--EVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchH--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 446677888899999999998854 3333 678888888888888877666666655543
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.03 E-value=49 Score=31.75 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 039695 96 YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTF 131 (605)
Q Consensus 96 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~ 131 (605)
||..|..-.+.||+++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666655333343
No 423
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=38.94 E-value=3.5e+02 Score=25.67 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=43.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----ChhHHHhHHHhhccc
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP-----NQHMLASVINACASL 243 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~t~~~ll~a~~~~ 243 (605)
++--|+|.=+...=..+|+....| ..|..-+.+.|+.+.|-.++--+....+... +......++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 333344444444444556555432 2455666667777777666555543321222 233344455555556
Q ss_pred CchhhHHHHHHHHHH
Q 039695 244 GRLVSGKVAHGVVVR 258 (605)
Q Consensus 244 ~~~~~a~~~~~~~~~ 258 (605)
++++.+.++.+.+..
T Consensus 234 ~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 234 GDWDLCFELVRFLKA 248 (258)
T ss_pred ccHHHHHHHHHHHHH
Confidence 666666666655554
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.80 E-value=61 Score=31.11 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 338 (605)
-||..|..-.+.||.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788888888888888888888888888776566665443
No 425
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.76 E-value=2.2e+02 Score=23.29 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCchHH----HHHHHHHhcCChhHHHHHHHHH
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLI-------ESNQQVANAYV----TLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~y~~~g~~~~a~~~~~~m 461 (605)
...+..|-.++...|++++++...+..+ +++.+....|+ .-..++...|+.++|.+.|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3345555566666666665555555444 34444433333 3345566788888888888754
No 426
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=38.72 E-value=1.4e+02 Score=25.20 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 039695 384 DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEW 451 (605)
Q Consensus 384 ~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 451 (605)
+.|.++.+-|. . ....-.........|++..|.++.+.++..+|++..+-...+++|.+.|.-
T Consensus 58 ~~A~~~v~l~G---G--~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---G--ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---C--HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45566666553 1 333344455567789999999999999999999988888888877766543
No 427
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=38.41 E-value=4.3e+02 Score=26.60 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=111.8
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHH--HHHHHcCCCCCHHHHHHHH
Q 039695 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLF--NEMISRGIKPNDVTFVGVL 338 (605)
Q Consensus 261 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~--~~m~~~g~~pd~~t~~~ll 338 (605)
...+..+...+++.+...++++.--+.. ....-++|+...|+.-. +-|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 3445556666667776666665432221 12223466666665432 2232233456666666666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHH-----------
Q 039695 339 HACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL----------- 407 (605)
Q Consensus 339 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~l----------- 407 (605)
..... +-++. +|-+. + ....-..|...+-.+|+.++|.+++.+.+ ..||+++
T Consensus 114 ~tLr~---Vtegk-IyvEv-E------RarlTk~L~~ike~~Gdi~~Aa~il~el~------VETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 114 ETLRT---VTEGK-IYVEV-E------RARLTKMLAKIKEEQGDIAEAADILCELQ------VETYGSMEKSEKVAFILE 176 (439)
T ss_pred HHHHH---hhcCc-eEEee-h------HHHHHHHHHHHHHHcCCHHHHHHHHHhcc------hhhhhhhHHHHHHHHHHH
Confidence 55422 11110 11101 0 12222346777888999999999998886 4455543
Q ss_pred -HHHHHHcCChHHHHHHHHHHHhcC---CCC----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeC
Q 039695 408 -LSASRLHGRVDIAVEASNQLIESN---QQV----ANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIR 478 (605)
Q Consensus 408 -l~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 478 (605)
+..|...+|+-.|--+-+++.... |+. ...|..++......+.+=++-+.++.+-+.|-.+....-|+.+-
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 456788899999988888776532 221 12677888888889999999999999988776655444566543
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.39 E-value=1.8e+02 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=26.0
Q ss_pred hCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHH
Q 039695 175 KCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213 (605)
Q Consensus 175 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 213 (605)
..|+.+.|+++++.++ +.+-.|...+.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777777777777 6666777777777666655444
No 429
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.33 E-value=36 Score=37.37 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCC
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
+|..+.+.|-++-|+.+.+.=..+ ......+|+++.|++...++. + ..+|..|......+|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d--~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---D--KDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---c--HHHHHHHHHHHHHhcc
Confidence 444455667676666554433222 233456899999999888764 4 7799999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 039695 417 VDIAVEASNQLIES 430 (605)
Q Consensus 417 ~~~a~~~~~~~~~~ 430 (605)
.+.|+..|++....
T Consensus 688 ~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKNF 701 (1202)
T ss_pred hHHHHHHHHHhhhh
Confidence 99999998876643
No 430
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.29 E-value=51 Score=30.20 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=42.6
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCC
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPD 398 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~ 398 (605)
....++.+.+.+++.+.. ++.|. ...|..+...--++|+++.|.+.+++ +...|+
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 346788888888888775 66676 77888888888899999999988887 445555
No 431
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.39 E-value=1.2e+02 Score=22.94 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 039695 47 ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIA 112 (605)
Q Consensus 47 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a 112 (605)
..++..+.+.|+-.+ ...-..-+...+.+.|.++++.++.+...+|.+...++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 567777777774332 22223334556788899999999999999999999998887765544
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.39 E-value=1.8e+02 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=14.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
+..|.+.|.+++|.+++++..+ +|++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~ 143 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPES 143 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCc
Confidence 3445666666666666666655 4443
No 433
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.24 E-value=5e+02 Score=27.05 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=7.3
Q ss_pred HHHHHHHHhCCCCc
Q 039695 48 SVHSEILKSGFLSN 61 (605)
Q Consensus 48 ~~~~~~~~~g~~~~ 61 (605)
.+.+.+++.|..++
T Consensus 49 ~ivk~Ll~~g~~~~ 62 (480)
T PHA03100 49 DVVKILLDNGADIN 62 (480)
T ss_pred HHHHHHHHcCCCCC
Confidence 34455555565544
No 434
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.17 E-value=3.1e+02 Score=24.65 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=60.1
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhh--HHHHHHHHHHcCChh
Q 039695 136 KACSMLADLITGKQIHTHIETFGFQYN--LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS--WTSIIVAHAQNAQGH 211 (605)
Q Consensus 136 ~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~ 211 (605)
+.+...+++++|..-+.......-..+ ..+--.|.......|.+|+|...++....++-.+ -..-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 456677888888888877664321111 1223345567778899999999998887764433 222345688889999
Q ss_pred HHHHHHHHHHHcC
Q 039695 212 EALEMFREFNYQS 224 (605)
Q Consensus 212 ~A~~~~~~m~~~~ 224 (605)
+|..-|.+....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 9988888887764
No 435
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.13 E-value=4.2e+02 Score=26.10 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 039695 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSH------SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (605)
.++++.++++....+. |-++.....|.+|-. .-++.....+|+.+. .+.|++.+--.-.-++++..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHHh
Confidence 5678888888877765 788887777766532 235666667777663 345553322222233444455666
Q ss_pred HHHHHHhCCCCC--CchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 386 AYKLAKSIQVDP--DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 386 A~~~~~~m~~~p--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
++.+++.+...| ++....+..-...+.+.|..++|...|++.+.+.++..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 677776665443 22233555666778889999999999999998876543
No 436
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=36.53 E-value=3.4e+02 Score=24.91 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh-hHHHHHHH--HHHcCChhHHHHHHHHHHHcC
Q 039695 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVV-SWTSIIVA--HAQNAQGHEALEMFREFNYQS 224 (605)
Q Consensus 163 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~~ 224 (605)
+.++|-|.--+...|+++.|.+.|+..-+-|+. -|..+=.+ +--.|++.-|.+-|...-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 567887777788888888888888887764442 12222111 223577777777666655543
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.45 E-value=1.9e+02 Score=22.01 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHH
Q 039695 277 KCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFS 315 (605)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (605)
..|+.+.|+++++.++ .....|...+.++-..|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777777 6666777777777776665444
No 438
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.89 E-value=2.7e+02 Score=25.12 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-AYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
...+.++..|...||++.|.++|.-++...+-|.. .|..=+.++.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 35566777777777888888777777776554433 344444555555555554466665543
No 439
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.61 E-value=5.3e+02 Score=26.86 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCchHH--HHHHHHHHH--cCCChhHHHHHHhcC
Q 039695 47 ASVHSEILKSGFLSNTFT--LNHLINCYV--RLKKTQVARQLFDEM 88 (605)
Q Consensus 47 ~~~~~~~~~~g~~~~~~~--~~~li~~~~--~~g~~~~A~~~f~~m 88 (605)
..+.+.+++.|..++... ..+.+...+ +.|+.+-...+++.-
T Consensus 86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g 131 (480)
T PHA03100 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131 (480)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC
Confidence 445555556665433211 112222333 556666655555543
No 440
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.19 E-value=71 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=33.8
Q ss_pred HhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 377 LGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
..+.|+.++|..+|+. +...|+ ++....-+......++++-+|-+.|-+++...|.+..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3456666666666654 333343 24444444444455566666666666666666666543
No 441
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.03 E-value=2.3e+02 Score=23.34 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039695 112 ALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETF 157 (605)
Q Consensus 112 a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 157 (605)
..+-++.+...++.|+.......|+||-+.+|+..|..+++-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455556677788888888888888888888888888776543
No 442
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.96 E-value=3.2e+02 Score=28.81 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=10.3
Q ss_pred HHHHHHhCCCHHHHHHHHhhc
Q 039695 169 LVDMYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m 189 (605)
|+.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555554444
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.81 E-value=2.3e+02 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCC
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQVDPD 398 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~p~ 398 (605)
.+-.|.+.|.+++|.+++++.-..|+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~ 142 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPE 142 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCC
Confidence 35567888899999888888665555
No 444
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=33.93 E-value=4.8e+02 Score=25.82 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 039695 271 LVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSL-DLFNEMISRGIKPNDVTFVGVLHACSHSGLVDE 349 (605)
Q Consensus 271 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 349 (605)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+... .+++.+... ||..+...+++|.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 3444444444444444444443322333334444433333333322 333333332 788888888888777666655
Q ss_pred HHHHHHHHH
Q 039695 350 GIQHLDSMY 358 (605)
Q Consensus 350 a~~~~~~m~ 358 (605)
....++.+.
T Consensus 249 ~~~~i~~~L 257 (340)
T PF12069_consen 249 VAILIDALL 257 (340)
T ss_pred HHHHHHHHh
Confidence 555455453
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.83 E-value=58 Score=22.88 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 92 NVVSYTSLMAGYINMGQPQIALLLFQKMLG 121 (605)
Q Consensus 92 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 121 (605)
|..-.-.+|.+|.+.|++++|.++.+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567788888888888887777654
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.63 E-value=3.9e+02 Score=24.70 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHH
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASR 412 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~ 412 (605)
++.++...|+.+.|..+++... ..-.+...-..++.. ..++.+.||..+.+.....-. ...|..++..|.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~--~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELR--RRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhh--HHHHHHHHHHHH
Confidence 4444444555555555555431 111112222222222 334566666665555442111 335555555554
No 447
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=32.96 E-value=28 Score=35.14 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=91.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHH--HHH------hCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 039695 91 PNVVSYTSLMAGYINMGQPQIALLLFQ--KML------GNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162 (605)
Q Consensus 91 ~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~------~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 162 (605)
|+..+.-+++.-|+++- -+.+-+|+ +.. ..|+.||.++|.+=..+--+......|+..++.++ ||
T Consensus 372 pngks~vCiLhEy~q~~--lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd 444 (650)
T KOG4334|consen 372 PNGKSKVCILHEYAQQC--LKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PD 444 (650)
T ss_pred CCCceeeehHHHHHHHH--hhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhc-----ch
Confidence 55666666666666432 12222221 111 12566777777654444444455666777666553 34
Q ss_pred hhHHHH--HHHHHHhCCCHHHHHHHHhhcCC--CCh----------hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 039695 163 LVVCSS--LVDMYGKCNDVDGARRVFDLMGC--RNV----------VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRP 228 (605)
Q Consensus 163 ~~~~~~--Li~~y~~~g~~~~A~~~~~~m~~--~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 228 (605)
...-.. -=..-...|.-..-+++|+.+.- |.+ ..|+.|..++.++-.+.+ +.+=.+|...+ .+-
T Consensus 445 ~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~-nqk 522 (650)
T KOG4334|consen 445 LRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNG-NQK 522 (650)
T ss_pred hhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCC-Ccc
Confidence 332222 00000122344556788888753 322 357778887777655531 11223333333 222
Q ss_pred ChhHHHhHHHhhcc------cCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 039695 229 NQHMLASVINACAS------LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278 (605)
Q Consensus 229 ~~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 278 (605)
+.+ +-+|.+ ..+...+.++-.+.+-.-+.|.+.+|.+|+.+|++.
T Consensus 523 se~-----im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 523 SEV-----IMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred cee-----EeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 222 222221 224556777766666566688889999999999775
No 448
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.35 E-value=71 Score=30.61 Aligned_cols=54 Identities=9% Similarity=0.200 Sum_probs=33.2
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCC
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPD 398 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~ 398 (605)
.+.|+.++|..+|+... .+.|+ +....-+....-...++-+|-..+-+ +...|.
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 46788999999998775 56676 55544444444444555566665544 334454
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.24 E-value=2.2e+02 Score=30.67 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=43.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHHH------HHHHHHHHHHhcCCCCcHHHHHH
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISR--GIKPNDVTFVGVLHACSHSGLVDE------GIQHLDSMYRKYGIIPDAKHYTC 372 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~------a~~~~~~m~~~~~~~p~~~~~~~ 372 (605)
+|+.+|..+|++..+..+++.+... |-+.-...++..|+...+.|.++. +.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777888888888888877777653 333333456666777777776542 23333322 35556666666
Q ss_pred HHHH
Q 039695 373 VVDM 376 (605)
Q Consensus 373 li~~ 376 (605)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6544
No 450
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.06 E-value=2.2e+02 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHH
Q 039695 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 213 (605)
.+...+.+.|.++++.++.+...+|.++..++-..|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34455677788888888888877888777777776655443
No 451
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.24 E-value=4.8e+02 Score=25.03 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=67.7
Q ss_pred chhhhhccchHHHHHHHHHhhhCCCCCChhhH-------HHHHHHhhChhHH-------HHHHHHHHHhCCCCchHHHHH
Q 039695 2 KKSLTRNLIFTLAASSLTRQNKRSSCHTKAHF-------IQQLQECKHLISL-------ASVHSEILKSGFLSNTFTLNH 67 (605)
Q Consensus 2 ~~~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~-------~~~l~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~ 67 (605)
.+..++.+++++|...+.+....|+..+.-+. ..+.+-+.+.++. .+..+.|....-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 45678899999999999999998887665543 3333333322221 122222222222233444455
Q ss_pred HHHHHHcC-CChhHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHH----HHhCCCCCChhhH
Q 039695 68 LINCYVRL-KKTQVARQLFDEMLE-----PN----VVSYTSLMAGYINMGQPQIALLLFQK----MLGNLVWPNEFTF 131 (605)
Q Consensus 68 li~~~~~~-g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~pd~~t~ 131 (605)
|+..+... ..+++-+++.....+ .- ...-.-+|..+.+.|.+.+|+.+... +++..-+|+..+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 55554332 234444444443311 00 11123466777777877777766543 3344445554443
No 452
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=31.20 E-value=55 Score=24.24 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHCCccCC
Q 039695 493 RGSEVLSLLRELERKMKERGYVGG 516 (605)
Q Consensus 493 ~~~~~~~~l~~l~~~m~~~g~~pd 516 (605)
...+++..+++...+++..|+.||
T Consensus 6 ~li~il~~ie~~inELk~dG~ePD 29 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPD 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445677788888899999999999
No 453
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.70 E-value=45 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=17.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCChh
Q 039695 208 AQGHEALEMFREFNYQSRDRPNQH 231 (605)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~p~~~ 231 (605)
=+++.|+..|.++...|.++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 467888888888887775666543
No 454
>PRK14700 recombination factor protein RarA; Provisional
Probab=29.94 E-value=5.2e+02 Score=25.07 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039695 96 YTSLMAGYIN---MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139 (605)
Q Consensus 96 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~ 139 (605)
+--+|+++.+ ..+++.|+-.+.+|++.|-.|....-..++-++-
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsE 172 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASE 172 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3334555543 2456666666666666665554444444444443
No 455
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=29.90 E-value=2.6e+02 Score=29.17 Aligned_cols=89 Identities=11% Similarity=0.236 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CCch
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ--------VANA 437 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~ 437 (605)
++..|...+.-|+..+++++|.++.+... + ...|.+|......+.+..-++.+|..+.+.+.- -+.-
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---e--qTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltsk 646 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---E--QTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSK 646 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---c--hHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcH
Confidence 34557777888899999999999988765 3 678999988888888888777777666554311 1112
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
-..++....-.|+..+|.-++.
T Consensus 647 e~~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 647 EEQMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHHHhccchhhhHHHH
Confidence 2234444555677777776654
No 456
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.66 E-value=1.5e+02 Score=28.14 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 405 GTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 405 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
..+=+++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344466778888999999999999999998877777788899999988888888776554
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.21 E-value=8.8e+02 Score=27.44 Aligned_cols=218 Identities=12% Similarity=0.023 Sum_probs=104.9
Q ss_pred HhCCCHHHHHHHHhhcC----CCCh-------hhHHHHHHH-HHHcCChhHHHHHHHHHHHcC---CCCCChhHHHhHHH
Q 039695 174 GKCNDVDGARRVFDLMG----CRNV-------VSWTSIIVA-HAQNAQGHEALEMFREFNYQS---RDRPNQHMLASVIN 238 (605)
Q Consensus 174 ~~~g~~~~A~~~~~~m~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~---~~~p~~~t~~~ll~ 238 (605)
.-..++++|..+..+.. .|+. ..|+++-.. ....|++++|+++-+.....- ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577788877776553 2222 245555433 334678888888877765431 02233444555555
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcHhHHH---HH--HHHHHhcCCH--HHHHHHHhccCC-----CC-----cchHHH
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVAS---AL--VDMYAKCGSV--NYSDKVFNRISN-----PS-----VVTYTS 301 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~l--i~~y~~~g~~--~~A~~~~~~~~~-----~~-----~~~~~~ 301 (605)
+..-.|++++|..+.....+..-..++..+. .+ ...+...|.. ++.+..|..... .. ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6666788888887777666543223333222 22 2234445532 223333333321 11 123333
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----cHHHHHHHH
Q 039695 302 MIVGAAKY-GLGRFSLDLFNEMISRGIKPNDVT--FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP----DAKHYTCVV 374 (605)
Q Consensus 302 li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li 374 (605)
+..++.+. +...++..-+.--......|-..- +..|.......|++++|...++++. .....+ +...-.+.+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~-~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE-RLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCCCchHHHHHHHh
Confidence 44444441 112222222222222212221111 2245666677889998888887773 322222 222222222
Q ss_pred HH--HhhcCCHHHHHHHHHh
Q 039695 375 DM--LGRTGRLDEAYKLAKS 392 (605)
Q Consensus 375 ~~--~~~~g~~~~A~~~~~~ 392 (605)
.. -...|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356777777776655
No 458
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.67 E-value=5.5e+02 Score=24.92 Aligned_cols=79 Identities=5% Similarity=-0.105 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChhHHHHHHH
Q 039695 144 LITGKQIHTHIETFGF----QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFR 218 (605)
Q Consensus 144 ~~~a~~~~~~~~~~g~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (605)
.+.+.+.+......+. ..++.....+.....+.|+.+.-..+++.... ++......++.+.+...+.+...+++.
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3445555655555311 23444455555555566665544444444433 334444555555555555555445554
Q ss_pred HHHH
Q 039695 219 EFNY 222 (605)
Q Consensus 219 ~m~~ 222 (605)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 4444
No 459
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.08 E-value=4.8e+02 Score=24.07 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=10.5
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 039695 302 MIVGAAKYGLGRFSLDLFNE 321 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~ 321 (605)
++.++..+|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44555555555555555544
No 460
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.05 E-value=1.8e+02 Score=21.56 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=6.0
Q ss_pred cCCChhHHHHHHh
Q 039695 74 RLKKTQVARQLFD 86 (605)
Q Consensus 74 ~~g~~~~A~~~f~ 86 (605)
+.|+++....+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444444
No 461
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.89 E-value=3e+02 Score=29.69 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHH------HHHHHHhhcC-CCChhhHHHHHHH
Q 039695 133 TVIKACSMLADLITGKQIHTHIETFG--FQYNLVVCSSLVDMYGKCNDVD------GARRVFDLMG-CRNVVSWTSIIVA 203 (605)
Q Consensus 133 ~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~------~A~~~~~~m~-~~~~~~~~~li~~ 203 (605)
+++.+|...|++-.+.++++...... -+.-...+|..++-..+.|.++ .|.+++++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78888888888888888888777642 1222345666666677777643 3444444432 2455666666555
Q ss_pred HHH
Q 039695 204 HAQ 206 (605)
Q Consensus 204 ~~~ 206 (605)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 462
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.77 E-value=5.1e+02 Score=24.24 Aligned_cols=15 Identities=7% Similarity=-0.248 Sum_probs=6.1
Q ss_pred HHHHHHcCChhHHHH
Q 039695 303 IVGAAKYGLGRFSLD 317 (605)
Q Consensus 303 i~~~~~~g~~~~A~~ 317 (605)
+..+.+..+++.+..
T Consensus 51 alchlk~~~~~~v~~ 65 (284)
T KOG4642|consen 51 ALCHLKLKHWEPVEE 65 (284)
T ss_pred HHHHHHhhhhhhhhh
Confidence 334444444444333
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.59 E-value=2.5e+02 Score=24.50 Aligned_cols=20 Identities=15% Similarity=-0.115 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhCCCCCChhh
Q 039695 111 IALLLFQKMLGNLVWPNEFT 130 (605)
Q Consensus 111 ~a~~~~~~m~~~g~~pd~~t 130 (605)
.|.++++.+.+.+..++..|
T Consensus 43 Sa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 43 SAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred CHHHHHHHHHhhCCCCCcch
Confidence 34444444444433333333
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.53 E-value=2.8e+02 Score=26.07 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=11.6
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 039695 200 IIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~m 220 (605)
|..-|.+.|++++|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455556666666555554
No 465
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.39 E-value=21 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=16.8
Q ss_pred ceEEEecCCcccccccccccC
Q 039695 581 RDFVVRDVNRFHHFRNGSCSC 601 (605)
Q Consensus 581 ~~~~~~d~~~~~~~~~g~~~~ 601 (605)
+.|-+.|.+..|+|+|||-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467788999999999998653
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.20 E-value=2.9e+02 Score=23.40 Aligned_cols=42 Identities=5% Similarity=0.066 Sum_probs=17.4
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 039695 136 KACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN 177 (605)
Q Consensus 136 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 177 (605)
......++.-.|.++|+.+.+.+...+..|.-.-++.+...|
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 28 ELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333333333444555555544443333333333334444444
No 467
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.07 E-value=1.5e+02 Score=30.26 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=30.9
Q ss_pred HHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 390 ~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
|......|.....+..+-++.+.+++++..|..+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333334454335577777888889999999999999999998864
No 468
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.81 E-value=7.1e+02 Score=25.56 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHA 205 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 205 (605)
++..+....+.++.+.+..+....+..-+..++...-.+.+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 444556666666666666555555555554444433333334433
No 469
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.69 E-value=1.1e+03 Score=27.75 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=13.6
Q ss_pred HHHHhcCCHHHHHHHHhccC
Q 039695 273 DMYAKCGSVNYSDKVFNRIS 292 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~ 292 (605)
.+|..+|..-+|.+.|.+..
T Consensus 928 ~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeeecCCchHHHHHHHHHHh
Confidence 34667777777777776553
No 470
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.50 E-value=1.3e+02 Score=29.12 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGT-LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (605)
|+..|...+.-.-+.|.+.+.-.++.+. ...|. +...|-. ----+..+++++.+..+|.+.+.++|++|..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4444444444334445555555555543 23343 2555533 22335678899999999999999999998876643
No 471
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=5.9e+02 Score=24.48 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=30.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHhccCcHHH
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTF-------VGVLHACSHSGLVDE 349 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------~~ll~a~~~~g~~~~ 349 (605)
-..+.+++++|+..+.+....|+..|..+. ..+..-|...|+...
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 345677888999999999888887776543 344445555555443
No 472
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.39 E-value=6e+02 Score=27.40 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 039695 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291 (605)
Q Consensus 214 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 291 (605)
....+.....- ...+......++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+.++|+......+-+.+
T Consensus 390 ~~~i~~lL~~~-p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRV-PLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhC-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444332 2334555667777788877777777777665543322 223445566677777776665554443
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.38 E-value=2.5e+02 Score=24.50 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=34.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 039695 322 MISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384 (605)
Q Consensus 322 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 384 (605)
+...|+++...-. .++.........-.|.++++.+ ++.+..++..|-..-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L-~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLL-REAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHH-HhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666554332 3444444445555677788877 34455556444444557777777764
No 474
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.33 E-value=3e+02 Score=21.06 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=10.1
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 039695 340 ACSHSGLVDEGIQHLDSMY 358 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~ 358 (605)
.....|.+++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444556666655555554
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.04 E-value=3.4e+02 Score=22.98 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 039695 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384 (605)
Q Consensus 319 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 384 (605)
.+.+.+.|+++...= ..++......+..-.|.++++.+.+ .+...+..|-..-++.+...|-+.
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344455555544322 2344445555555666677776633 233333333333346666666543
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.97 E-value=7.1e+02 Score=25.31 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISN------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
....-+.+.|..||+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4667788899999999999999998653 2223455555555666777777777766654
No 477
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.71 E-value=9e+02 Score=26.38 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=82.7
Q ss_pred HHHHHHHHHH-cCCChhHHHHHHhcC----CCCChh-----hHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChh
Q 039695 64 TLNHLINCYV-RLKKTQVARQLFDEM----LEPNVV-----SYTSLMAGYINMGQPQIALLLFQKMLGNL----VWPNEF 129 (605)
Q Consensus 64 ~~~~li~~~~-~~g~~~~A~~~f~~m----~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~pd~~ 129 (605)
+.-.+...|. ...+++.|+..+++. .+++.. .-..++..+.+.+... |....++..+.- ..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555554 567888888888865 122221 1234455665655544 888887765532 112222
Q ss_pred hHHHH-HHHHhccCChHHHHHHHHHHHHhC---CCCchhHHHHHHHHHH--hCCCHHHHHHHHhhcC----C--------
Q 039695 130 TFATV-IKACSMLADLITGKQIHTHIETFG---FQYNLVVCSSLVDMYG--KCNDVDGARRVFDLMG----C-------- 191 (605)
Q Consensus 130 t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~Li~~y~--~~g~~~~A~~~~~~m~----~-------- 191 (605)
.|..+ +..+...++...|.+.++.+.... ..|-..++-.++.+.. +.+..+++.+..+++. .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33332 222223368888888887776542 2344444444444333 4455555655555441 1
Q ss_pred -CChhhHHHHHHH--HHHcCChhHHHHHHHHHH
Q 039695 192 -RNVVSWTSIIVA--HAQNAQGHEALEMFREFN 221 (605)
Q Consensus 192 -~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 221 (605)
|-...|..++.. +...|+++.+...++++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234456655543 445677666666655553
No 478
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.50 E-value=7.9e+02 Score=25.69 Aligned_cols=290 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----------------CHHHHH
Q 039695 120 LGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCN----------------DVDGAR 183 (605)
Q Consensus 120 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----------------~~~~A~ 183 (605)
+..+..-........-..-...+.++...+.++.+...|.....+.+|.-+..|.+.| +.+.+-
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred HHHhhcCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHH-----hhcccCchhhHHHHHHHHH
Q 039695 184 RVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN-----ACASLGRLVSGKVAHGVVV 257 (605)
Q Consensus 184 ~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~-----a~~~~~~~~~a~~~~~~~~ 257 (605)
.+.+.... ...+.+....-+|.....+..|+++....... +.|=...+..... .++.....+++..++..+.
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r--~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~ 166 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR--TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLA 166 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh--------------------------------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHH
Q 039695 258 RS--------------------------------GCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSM 302 (605)
Q Consensus 258 ~~--------------------------------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 302 (605)
+. --.+......--+.+|....++..+.+-.+... ..+....-.-
T Consensus 167 ~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LK 246 (696)
T KOG2471|consen 167 EIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLK 246 (696)
T ss_pred HHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHH
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHhccCcHHHHHHHHHHHHH------hcCCCC---
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVT--------FVGVLHACSHSGLVDEGIQHLDSMYR------KYGIIP--- 365 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--------~~~ll~a~~~~g~~~~a~~~~~~m~~------~~~~~p--- 365 (605)
-+-+.-+|++.+|.+++..---..-+--..| ++.+--.+.+.|.+..+..+|....+ ..|+.|
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Q ss_pred -------cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCchhhHHHHHHHHHHH
Q 039695 366 -------DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ--VDPDGGPLLWGTLLSASRL 413 (605)
Q Consensus 366 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~~~ll~~~~~ 413 (605)
..+......-.|...|++-.|.+-|.+.. +..+ +..|-.|..+|..
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--PrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--PRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
No 479
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.39 E-value=3.2e+02 Score=26.44 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 167 SSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNY 222 (605)
Q Consensus 167 ~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 222 (605)
-.++..+.+..++....+.+..+. .+..-...+..+...|++..|++++.+...
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345556666666666666666552 333444567777888999999988887654
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.04 E-value=1.7e+02 Score=23.39 Aligned_cols=45 Identities=4% Similarity=-0.082 Sum_probs=27.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 039695 99 LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143 (605)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 143 (605)
++..+...+.+-.|-++++.+.+.+..++..|....|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555555556677777777776666666666555665555543
No 481
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=24.96 E-value=2.3e+02 Score=21.73 Aligned_cols=59 Identities=7% Similarity=0.131 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 039695 47 ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQP 109 (605)
Q Consensus 47 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 109 (605)
..+...+.+.|+-.+.. .-...+..-+.+.+.++++.++.+...+|..+..++-..+..
T Consensus 23 ~~v~~~L~~~gvlt~~~----~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 23 DELLIHLLQKDILTDSM----AESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHcCCCCHHH----HHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 56777777777543321 222233456778889999998888888999888888665543
No 482
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.89 E-value=1.5e+02 Score=21.10 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=30.0
Q ss_pred CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 293 NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
.+....++.++..++...-.++++..+.+....|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666777777776667777777777777665 345555555554443
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.63 E-value=3.3e+02 Score=27.74 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 267 VASALVDMYAKCGSVNYSDKVFNRISN-----------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323 (605)
Q Consensus 267 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 323 (605)
....|+..++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999887751 244566677778888899999999887754
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.57 E-value=1.8e+02 Score=23.26 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 039695 303 IVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 346 (605)
+..+...+..-.|.++++++.+.+..++..|....|..+...|.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 34444444555566666666666655566665555555555544
No 485
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=24.23 E-value=6.4e+02 Score=25.74 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=10.4
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 039695 372 CVVDMLGRTGRLDEAYKLA 390 (605)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~ 390 (605)
-|+..|.+.++.+-|+.-.
T Consensus 233 klv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHhhhhcCCCchHHHHH
Confidence 3445555666666555543
No 486
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=24.10 E-value=7.1e+02 Score=28.42 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 269 SALVDMYAKCGSVNYSDKVFNRISNP---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 269 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
...+...+..|+.+-+..+++.-..+ |..-++.+..+ +..|+.+ +.+.+.+.|..++..
T Consensus 623 ~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A-~~~g~~~----iv~~Ll~~GAdv~~~ 684 (823)
T PLN03192 623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA-MAEDHVD----MVRLLIMNGADVDKA 684 (823)
T ss_pred chHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCcHH----HHHHHHHcCCCCCCC
Confidence 34555667778888888777765543 33344454443 4556553 344444556555543
No 487
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.07 E-value=6.2e+02 Score=23.96 Aligned_cols=112 Identities=18% Similarity=0.013 Sum_probs=52.7
Q ss_pred CCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChhhHHHHHHHHhccCChH-HHHH
Q 039695 75 LKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF----QKMLGNLVWPNEFTFATVIKACSMLADLI-TGKQ 149 (605)
Q Consensus 75 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~ 149 (605)
.+++++|.+++..- ...+.+.|+...|-++- +-..+.+.++|......++..+...+.-+ .-.+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45566666655332 22334455554443332 33333455556555555555444332211 1222
Q ss_pred HHHHHHH---hC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhH
Q 039695 150 IHTHIET---FG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSW 197 (605)
Q Consensus 150 ~~~~~~~---~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~ 197 (605)
+...+++ .| -..++.....+...|.+.|++.+|+.-|-.-..++...+
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 2233322 22 234677888888999999999999988766544444443
No 488
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=23.77 E-value=5.8e+02 Score=26.04 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHH--HHHHHHHhc
Q 039695 353 HLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAV--EASNQLIES 430 (605)
Q Consensus 353 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~--~~~~~~~~~ 430 (605)
+|..+ ++..+.||...+.-+..+|.+.=-++-|.++++-.-...+ ...+.+.+..+......=... ...-+.+..
T Consensus 461 L~~Hl-~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdge--eFlfr~~lgIlklyepkLl~mDf~~~~qfLtk 537 (586)
T KOG2223|consen 461 LFTHL-KKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE--EFLFRTALGILKLYEPKLLVMDFIHVAQFLTK 537 (586)
T ss_pred HHHHH-HhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecch--HHHHHHHHHHHHHccchHhhhhHHHHHHHHHh
Confidence 34444 4668999999999999999999999999999887654444 777777777765544321111 111122222
Q ss_pred CCCCC-----chHHHHHHHHHhcCChhHHHHHHH
Q 039695 431 NQQVA-----NAYVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 431 ~p~~~-----~~~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
.|.+. ......+.+..+.++|.++..-.+
T Consensus 538 lp~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~ 571 (586)
T KOG2223|consen 538 LPEDLTPEELFMHIAYIQMQSRSKKWSQVFQEID 571 (586)
T ss_pred CcccCCHHHHHHHHHHHhhhhhchhHHHHHHHHH
Confidence 34332 233334444566677766554443
No 489
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.58 E-value=7.8e+02 Score=24.92 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 039695 96 YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF--TFATVIKACS--MLADLITGKQIHTHIETF 157 (605)
Q Consensus 96 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~--t~~~ll~a~~--~~~~~~~a~~~~~~~~~~ 157 (605)
|..... +.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 135 ~~~a~~-l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKE-LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344443 44789999999999999887 665554 3444445553 345678888888877664
No 490
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.43 E-value=4.6e+02 Score=23.55 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=28.7
Q ss_pred HHHHhcCCHHHHHHHHhccCC------CCcchHHHHHH-HHHHcCC--hhHHHHHHHHHHH
Q 039695 273 DMYAKCGSVNYSDKVFNRISN------PSVVTYTSMIV-GAAKYGL--GRFSLDLFNEMIS 324 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~ 324 (605)
-.....|++++|..-++++.+ .-...|+.+.. +|+.++. +-+|.-++.-...
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 334456777777777766642 23344555544 5666654 3355555555444
No 491
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.36 E-value=3.4e+02 Score=20.66 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 039695 126 PNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 126 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 189 (605)
|....|...++.-.....-+. ++|+.....|+..|+.+|-.+++...-+=..+...++++.|
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.32 E-value=1.7e+02 Score=20.89 Aligned_cols=34 Identities=6% Similarity=-0.110 Sum_probs=18.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 91 PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLV 124 (605)
Q Consensus 91 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 124 (605)
|....++.++..++...-.++++..+.++...|.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444555555555555555555555555555543
No 493
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.06 E-value=1.5e+02 Score=21.73 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
...|+.+++.+++++....|..|.......+..+...
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4468888999999999988888877666656555443
No 494
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.95 E-value=4.3e+02 Score=21.70 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 039695 349 EGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAK 391 (605)
Q Consensus 349 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 391 (605)
.+.++|..|. ..|+--. ...|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~-~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLY-SKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHH-HHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666663 3355443 5566666666667777777776665
No 495
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.81 E-value=7.3e+02 Score=24.34 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhh---cCCHHHHH
Q 039695 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGR---TGRLDEAY 387 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~---~g~~~~A~ 387 (605)
.+.-+.++++..+.+ +-+.......+..+.+....++..+-++.+... .| +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 455667777777662 234556667777777777777777777777644 33 36666666655433 23456666
Q ss_pred HHHHh----CCCCCCc-----------hhh---HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039695 388 KLAKS----IQVDPDG-----------GPL---LWGTLLSASRLHGRVDIAVEASNQLIESN 431 (605)
Q Consensus 388 ~~~~~----m~~~p~~-----------~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 431 (605)
++|.+ +...... ... ++..+..-+.+.|..+.|..+++-+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66544 2211110 011 22223333456777777777777777765
No 496
>PHA02791 ankyrin-like protein; Provisional
Probab=22.63 E-value=7e+02 Score=24.02 Aligned_cols=17 Identities=18% Similarity=-0.074 Sum_probs=8.1
Q ss_pred HHHhCCCHHHHHHHHhh
Q 039695 172 MYGKCNDVDGARRVFDL 188 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~ 188 (605)
.-+..|+.+-+.-+++.
T Consensus 134 ~Aa~~g~~eivk~LL~~ 150 (284)
T PHA02791 134 HAVMLNDVSIVSYFLSE 150 (284)
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33444555555444443
No 497
>PRK14015 pepN aminopeptidase N; Provisional
Probab=22.39 E-value=1.2e+03 Score=26.78 Aligned_cols=153 Identities=11% Similarity=0.032 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHh
Q 039695 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLG 378 (605)
Q Consensus 300 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 378 (605)
|..+.-++..+..+......++.... .|..--.+.+.++.+.+.. +....++..-.++.-.|- ..-|-++...-.
T Consensus 686 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 761 (875)
T PRK14015 686 NVCLSYLAAADDEEAAELAEAQFDQA---DNMTDRLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSP 761 (875)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCC
Confidence 33444444444333333344444443 2222233344455544332 223334444344444444 344444433322
Q ss_pred hcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCCh------HHHHHHH-HHHHhcCCCCCchHHHHHHHHHhcCCh
Q 039695 379 RTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV------DIAVEAS-NQLIESNQQVANAYVTLSNTYALAGEW 451 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~------~~a~~~~-~~~~~~~p~~~~~~~~l~~~y~~~g~~ 451 (605)
..+-++....+.+.=.+.+. ++.-..+|+.+++..+.. ..+.+++ +.++++++-||.+-..|+..+.+-.++
T Consensus 762 ~~~~~~~v~~l~~hp~f~~~-npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~ 840 (875)
T PRK14015 762 APDTLERVRALMQHPAFDLK-NPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRY 840 (875)
T ss_pred CcCHHHHHHHHhcCCCCCCC-CCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcc
Confidence 33333444444332222221 255778888888654433 4455544 566689999999888999999998888
Q ss_pred hHHHHH
Q 039695 452 ENVHSL 457 (605)
Q Consensus 452 ~~a~~~ 457 (605)
+...+.
T Consensus 841 ~~~r~~ 846 (875)
T PRK14015 841 DPKRQA 846 (875)
T ss_pred CHHHHH
Confidence 876653
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.39 E-value=6.4e+02 Score=23.48 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=79.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhc
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 380 (605)
++...-+.|+++++...++++...+...+..--+.+-.||-+ .|....+++++..+..+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667788888888888888887666666555555555532 34445556666555333222212 2222233222211
Q ss_pred ------CCHHHHHHHHHhCC--CCCCchhhH-HHHH-HHHHH----------HcCChHHHHHHHHHHHh-----cCCCCC
Q 039695 381 ------GRLDEAYKLAKSIQ--VDPDGGPLL-WGTL-LSASR----------LHGRVDIAVEASNQLIE-----SNQQVA 435 (605)
Q Consensus 381 ------g~~~~A~~~~~~m~--~~p~~~~~~-~~~l-l~~~~----------~~g~~~~a~~~~~~~~~-----~~p~~~ 435 (605)
.--.+.+++++..- ...+....+ |.-+ ...|+ +..-.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 11234445554421 111100111 1111 11111 11123677777777764 456555
Q ss_pred chHH----HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 436 NAYV----TLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 436 ~~~~----~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.-.- .-+-.|--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3211 112234568999999999888766544
No 499
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.11 E-value=8.7e+02 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=12.5
Q ss_pred CChhHHHhHHHhhcccCchhhHHHH
Q 039695 228 PNQHMLASVINACASLGRLVSGKVA 252 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~ 252 (605)
++...-..+..++...+.......+
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHH
Confidence 3444455555565555554444333
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.78 E-value=1.6e+02 Score=23.74 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL 346 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 346 (605)
+++..+...+.+-.|.++++.|.+.|...+..|.-..|..+...|.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3445555555566677777777776666666665555555554443
Done!