Query 039695
Match_columns 605
No_of_seqs 752 out of 4249
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.2E-39 1.8E-43 347.1 35.4 451 4-466 93-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-35 3.5E-40 321.3 28.4 381 70-464 61-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.8E-28 6.2E-33 254.7 21.8 182 196-379 28-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.7E-26 1.6E-30 231.8 38.2 372 70-450 7-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.8E-28 9.4E-33 253.3 19.8 182 95-277 28-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-25 4.9E-30 228.3 37.2 353 100-464 6-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.1E-22 1.1E-26 207.7 33.5 324 92-460 25-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.7E-22 5.7E-27 213.4 30.3 396 63-466 7-480 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 7.7E-21 2.6E-25 197.2 32.2 365 59-453 23-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 9.9E-21 3.4E-25 199.8 32.1 388 45-441 24-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 6.7E-20 2.3E-24 194.6 32.9 389 63-466 26-493 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 2.4E-18 8.1E-23 172.2 30.7 326 92-447 2-352 (359)
13 3fp2_A TPR repeat-containing p 99.8 7.4E-19 2.5E-23 186.6 27.8 383 45-439 43-500 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 1.5E-17 5.2E-22 166.3 33.3 307 128-465 3-336 (359)
15 3hym_B Cell division cycle pro 99.8 7.3E-18 2.5E-22 166.6 27.1 286 161-451 20-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 3.1E-18 1.1E-22 169.7 22.0 286 74-393 15-308 (449)
17 3hym_B Cell division cycle pro 99.8 8.4E-17 2.9E-21 159.0 28.8 266 192-464 20-299 (330)
18 2xm6_A Protein corresponding t 99.8 2.1E-15 7.1E-20 158.1 39.1 366 60-447 37-452 (490)
19 1fch_A Peroxisomal targeting s 99.8 2E-17 6.8E-22 166.4 21.8 279 175-460 37-355 (368)
20 2ooe_A Cleavage stimulation fa 99.8 2.5E-15 8.6E-20 159.1 38.9 397 59-465 10-493 (530)
21 2xm6_A Protein corresponding t 99.7 1.8E-14 6.1E-19 150.9 40.8 353 90-466 36-434 (490)
22 1fch_A Peroxisomal targeting s 99.7 1.1E-16 3.6E-21 161.1 22.6 298 105-429 37-358 (368)
23 1b89_A Protein (clathrin heavy 99.7 3.1E-18 1.1E-22 169.7 10.6 252 174-459 14-267 (449)
24 4eqf_A PEX5-related protein; a 99.7 3.9E-17 1.3E-21 164.3 18.9 261 193-460 64-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.7 3.4E-15 1.1E-19 144.6 28.8 269 173-457 9-287 (291)
26 4g1t_A Interferon-induced prot 99.7 3.2E-15 1.1E-19 155.8 30.4 253 207-475 188-470 (472)
27 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.5E-21 159.7 18.5 260 128-426 65-352 (365)
28 1xi4_A Clathrin heavy chain; a 99.7 1.3E-13 4.6E-18 151.8 42.0 409 3-459 993-1440(1630)
29 3cv0_A Peroxisome targeting si 99.7 5.8E-16 2E-20 152.7 20.8 256 198-461 25-312 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.7 9.5E-18 3.2E-22 178.9 8.2 130 61-190 126-263 (1134)
31 2ooe_A Cleavage stimulation fa 99.7 1.8E-14 6.1E-19 152.5 33.1 367 91-466 11-456 (530)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.9E-22 176.9 8.7 132 261-393 123-262 (1134)
33 1xi4_A Clathrin heavy chain; a 99.7 1.4E-13 4.7E-18 151.7 37.9 349 61-459 984-1340(1630)
34 3mkr_A Coatomer subunit epsilo 99.7 3.8E-15 1.3E-19 144.2 22.8 249 201-466 6-266 (291)
35 3cv0_A Peroxisome targeting si 99.7 7.8E-15 2.7E-19 144.5 24.4 218 135-357 28-266 (327)
36 4g1t_A Interferon-induced prot 99.7 3.9E-14 1.3E-18 147.5 30.3 367 59-442 48-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 8.9E-14 3E-18 131.8 19.8 220 195-465 6-237 (258)
38 2pl2_A Hypothetical conserved 99.6 2.8E-14 9.5E-19 131.8 15.8 195 262-462 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.5 1.7E-13 5.7E-18 129.9 17.6 238 162-442 4-254 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.6E-13 9E-18 130.0 17.9 243 207-458 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 3.5E-12 1.2E-16 121.9 23.9 241 168-447 8-267 (272)
42 2ho1_A Type 4 fimbrial biogene 99.5 1E-12 3.5E-17 124.1 19.8 199 265-466 37-240 (252)
43 2vq2_A PILW, putative fimbrial 99.5 2.1E-12 7.2E-17 119.4 21.5 200 263-465 6-212 (225)
44 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4.2E-17 131.0 20.2 245 195-447 98-365 (382)
45 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.7E-17 135.4 20.1 371 70-462 11-419 (452)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.6E-13 2.3E-17 127.2 15.6 239 106-354 18-269 (275)
47 2ho1_A Type 4 fimbrial biogene 99.5 4.7E-12 1.6E-16 119.5 21.2 204 194-438 37-246 (252)
48 1ouv_A Conserved hypothetical 99.5 2.2E-11 7.4E-16 116.7 25.5 224 193-466 5-253 (273)
49 2q7f_A YRRB protein; TPR, prot 99.5 8.6E-13 3E-17 123.8 15.3 140 297-440 92-232 (243)
50 3e4b_A ALGK; tetratricopeptide 99.5 5.1E-12 1.7E-16 130.4 22.1 343 99-466 9-389 (452)
51 2pl2_A Hypothetical conserved 99.5 2.5E-12 8.5E-17 118.6 17.8 191 161-393 3-211 (217)
52 2q7f_A YRRB protein; TPR, prot 99.5 9.5E-13 3.2E-17 123.5 15.2 199 264-466 22-224 (243)
53 1ouv_A Conserved hypothetical 99.4 2.6E-11 8.8E-16 116.1 24.7 227 161-434 4-255 (273)
54 4a1s_A PINS, partner of inscut 99.4 2.9E-12 1E-16 130.7 18.2 269 165-464 50-372 (411)
55 3sf4_A G-protein-signaling mod 99.4 6E-12 2E-16 127.8 20.2 269 163-463 9-335 (406)
56 3sf4_A G-protein-signaling mod 99.4 5.1E-12 1.8E-16 128.3 18.9 156 298-453 189-365 (406)
57 2vq2_A PILW, putative fimbrial 99.4 1.4E-11 4.7E-16 113.8 20.1 209 193-441 7-222 (225)
58 3u4t_A TPR repeat-containing p 99.4 6.8E-11 2.3E-15 112.9 25.6 194 63-259 4-208 (272)
59 3ro2_A PINS homolog, G-protein 99.4 5.7E-12 1.9E-16 124.1 18.3 200 265-464 83-332 (338)
60 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 4E-16 110.7 18.0 166 295-465 4-171 (184)
61 2h6f_A Protein farnesyltransfe 99.4 5.3E-12 1.8E-16 126.4 16.4 228 231-465 98-349 (382)
62 4abn_A Tetratricopeptide repea 99.4 2.2E-12 7.5E-17 134.0 13.6 209 247-461 85-318 (474)
63 2ond_A Cleavage stimulation fa 99.4 1.2E-10 4.1E-15 113.7 23.1 220 211-435 33-275 (308)
64 3ro2_A PINS homolog, G-protein 99.3 4.1E-11 1.4E-15 117.8 18.7 135 299-433 186-335 (338)
65 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.2E-16 124.7 16.5 276 129-433 49-375 (411)
66 4e6h_A MRNA 3'-END-processing 99.3 2E-08 7E-13 107.3 38.3 215 214-434 329-574 (679)
67 4e6h_A MRNA 3'-END-processing 99.3 1E-08 3.5E-13 109.5 35.6 415 49-467 54-573 (679)
68 3vtx_A MAMA; tetratricopeptide 99.3 4.2E-11 1.4E-15 107.1 14.3 167 264-435 4-175 (184)
69 4gyw_A UDP-N-acetylglucosamine 99.3 4.2E-11 1.4E-15 129.5 16.8 162 296-463 9-173 (723)
70 3nf1_A KLC 1, kinesin light ch 99.3 8.1E-11 2.8E-15 114.6 17.5 240 195-463 28-306 (311)
71 3ulq_A Response regulator aspa 99.3 1.4E-10 4.9E-15 117.0 18.6 91 267-357 186-290 (383)
72 3nf1_A KLC 1, kinesin light ch 99.3 1.6E-11 5.4E-16 119.6 11.0 243 160-433 24-310 (311)
73 3as5_A MAMA; tetratricopeptide 99.2 1.6E-10 5.5E-15 102.8 15.1 132 331-465 42-174 (186)
74 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.4E-14 106.3 22.4 178 110-291 33-229 (308)
75 3ulq_A Response regulator aspa 99.2 1.6E-09 5.5E-14 109.2 23.0 229 169-430 109-368 (383)
76 4i17_A Hypothetical protein; T 99.2 4.4E-10 1.5E-14 104.2 15.5 164 298-465 9-210 (228)
77 4i17_A Hypothetical protein; T 99.2 1.5E-09 5.1E-14 100.6 18.9 204 228-445 5-224 (228)
78 3as5_A MAMA; tetratricopeptide 99.2 9.6E-10 3.3E-14 97.7 16.9 169 265-437 8-180 (186)
79 1hz4_A MALT regulatory protein 99.2 1.5E-08 5E-13 101.6 27.2 197 268-464 96-322 (373)
80 4abn_A Tetratricopeptide repea 99.2 4.1E-10 1.4E-14 116.9 15.8 208 210-425 84-316 (474)
81 3q15_A PSP28, response regulat 99.1 1.6E-08 5.6E-13 101.6 26.0 230 169-429 107-364 (378)
82 3q15_A PSP28, response regulat 99.1 1.4E-09 4.9E-14 109.4 17.6 222 241-463 112-364 (378)
83 1hz4_A MALT regulatory protein 99.1 5.2E-08 1.8E-12 97.6 28.2 222 102-323 23-280 (373)
84 3edt_B KLC 2, kinesin light ch 99.1 2.3E-09 7.9E-14 102.4 15.8 220 243-463 14-280 (283)
85 1qqe_A Vesicular transport pro 99.1 2.8E-09 9.4E-14 103.0 15.6 189 273-461 45-266 (292)
86 3qky_A Outer membrane assembly 99.0 8.1E-09 2.8E-13 97.9 18.4 202 265-509 15-246 (261)
87 4gyw_A UDP-N-acetylglucosamine 99.0 1.8E-09 6.3E-14 116.7 13.3 164 262-431 6-175 (723)
88 3edt_B KLC 2, kinesin light ch 99.0 2.7E-08 9.3E-13 94.9 19.0 99 332-430 170-281 (283)
89 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.1E-08 1.7E-12 90.0 19.3 183 266-467 5-216 (225)
90 3mv2_B Coatomer subunit epsilo 98.9 8.5E-08 2.9E-12 91.1 19.4 160 299-464 103-282 (310)
91 2fo7_A Synthetic consensus TPR 98.9 1.4E-08 4.9E-13 84.5 12.7 125 337-464 7-132 (136)
92 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.8E-12 89.6 20.5 239 174-436 24-288 (310)
93 1qqe_A Vesicular transport pro 98.9 1.2E-07 4E-12 91.5 20.3 67 179-257 33-104 (292)
94 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-09 4.8E-14 93.4 5.5 139 306-450 7-149 (150)
95 3qky_A Outer membrane assembly 98.9 4.5E-08 1.5E-12 92.6 16.1 203 228-452 13-249 (261)
96 2fo7_A Synthetic consensus TPR 98.9 3.8E-08 1.3E-12 81.9 13.7 132 298-433 3-135 (136)
97 3qou_A Protein YBBN; thioredox 98.8 3.9E-08 1.3E-12 94.6 14.7 162 296-462 117-282 (287)
98 2pzi_A Probable serine/threoni 98.8 6.4E-09 2.2E-13 112.9 9.8 169 276-450 402-583 (681)
99 3gyz_A Chaperone protein IPGC; 98.8 2.1E-08 7.2E-13 85.8 10.5 104 362-466 30-135 (151)
100 2vsy_A XCC0866; transferase, g 98.8 5.6E-08 1.9E-12 103.5 15.0 160 278-442 2-169 (568)
101 2vgx_A Chaperone SYCD; alterna 98.8 3.1E-08 1.1E-12 84.7 10.2 103 362-465 15-119 (148)
102 4ga2_A E3 SUMO-protein ligase 98.8 1.4E-08 4.7E-13 87.2 7.9 124 337-464 3-129 (150)
103 3u3w_A Transcriptional activat 98.7 1.1E-06 3.9E-11 84.5 21.0 162 302-463 81-265 (293)
104 2r5s_A Uncharacterized protein 98.7 1.1E-07 3.7E-12 84.0 12.7 77 386-463 93-172 (176)
105 3rjv_A Putative SEL1 repeat pr 98.7 7.6E-07 2.6E-11 81.2 18.7 164 294-466 16-199 (212)
106 4gco_A Protein STI-1; structur 98.7 6.4E-08 2.2E-12 80.1 10.2 103 362-465 7-111 (126)
107 2uy1_A Cleavage stimulation fa 98.7 2.2E-05 7.4E-10 81.3 31.0 81 76-156 28-117 (493)
108 2pzi_A Probable serine/threoni 98.7 2.5E-07 8.4E-12 100.4 17.0 189 241-437 402-609 (681)
109 2vsy_A XCC0866; transferase, g 98.7 1.7E-07 5.7E-12 99.8 14.9 145 244-393 3-154 (568)
110 3urz_A Uncharacterized protein 98.7 2.2E-07 7.5E-12 84.5 13.5 128 302-434 60-190 (208)
111 2ifu_A Gamma-SNAP; membrane fu 98.7 3.3E-07 1.1E-11 89.0 15.5 221 207-456 4-253 (307)
112 2xcb_A PCRH, regulatory protei 98.7 2.6E-07 8.7E-12 78.3 12.5 103 362-465 12-116 (142)
113 2ifu_A Gamma-SNAP; membrane fu 98.6 3.4E-07 1.2E-11 89.0 14.4 199 242-462 3-222 (307)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.6E-07 1.6E-11 82.5 14.4 127 334-466 9-152 (213)
115 2uy1_A Cleavage stimulation fa 98.6 1.2E-05 3.9E-10 83.3 26.2 344 74-461 6-380 (493)
116 3urz_A Uncharacterized protein 98.6 7.9E-07 2.7E-11 80.8 14.4 136 267-409 56-198 (208)
117 3dra_A Protein farnesyltransfe 98.6 5.2E-06 1.8E-10 79.6 20.7 149 310-463 124-286 (306)
118 3qou_A Protein YBBN; thioredox 98.6 1.9E-06 6.4E-11 82.7 17.7 163 262-429 114-283 (287)
119 2r5s_A Uncharacterized protein 98.6 9.2E-07 3.2E-11 77.9 13.9 156 64-222 8-172 (176)
120 4gco_A Protein STI-1; structur 98.6 4E-07 1.4E-11 75.2 10.5 114 327-444 8-124 (126)
121 2qfc_A PLCR protein; TPR, HTH, 98.5 1.2E-06 4.1E-11 84.4 15.2 166 298-463 77-265 (293)
122 3dra_A Protein farnesyltransfe 98.5 2.1E-05 7.3E-10 75.3 23.3 225 208-442 47-300 (306)
123 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.4E-06 1.2E-10 77.6 17.2 187 229-436 3-219 (225)
124 3rjv_A Putative SEL1 repeat pr 98.5 3.6E-06 1.2E-10 76.6 17.0 173 249-433 5-200 (212)
125 2lni_A Stress-induced-phosphop 98.5 9.3E-07 3.2E-11 73.3 12.0 117 330-450 15-133 (133)
126 1a17_A Serine/threonine protei 98.5 8.2E-07 2.8E-11 76.9 12.0 128 332-463 14-145 (166)
127 1na0_A Designed protein CTPR3; 98.5 8.8E-07 3E-11 72.3 11.2 116 331-449 9-125 (125)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.1E-05 3.8E-10 73.2 19.2 91 268-359 9-99 (213)
129 2vyi_A SGTA protein; chaperone 98.5 1E-06 3.4E-11 72.7 11.0 118 331-452 12-131 (131)
130 1p5q_A FKBP52, FK506-binding p 98.5 5E-07 1.7E-11 88.9 10.5 95 367-462 196-292 (336)
131 2c2l_A CHIP, carboxy terminus 98.5 1.8E-07 6E-12 89.6 6.5 188 265-464 4-199 (281)
132 2e2e_A Formate-dependent nitri 98.4 4.6E-07 1.6E-11 79.9 8.2 121 342-466 21-146 (177)
133 3upv_A Heat shock protein STI1 98.4 1.2E-06 4E-11 72.3 10.1 98 367-465 4-102 (126)
134 2kck_A TPR repeat; tetratricop 98.4 8.3E-07 2.9E-11 70.9 8.8 99 367-466 6-108 (112)
135 3u3w_A Transcriptional activat 98.4 2.1E-05 7.2E-10 75.5 20.0 152 69-220 82-263 (293)
136 3gw4_A Uncharacterized protein 98.4 4.2E-06 1.4E-10 75.2 14.2 132 332-463 27-175 (203)
137 1hxi_A PEX5, peroxisome target 98.4 9E-07 3.1E-11 72.5 8.1 95 370-465 20-115 (121)
138 4f3v_A ESX-1 secretion system 98.4 8.3E-07 2.8E-11 83.2 8.7 136 301-441 107-247 (282)
139 2qfc_A PLCR protein; TPR, HTH, 98.4 6.7E-05 2.3E-09 71.9 22.6 166 265-430 75-266 (293)
140 3q49_B STIP1 homology and U bo 98.4 2.9E-06 9.8E-11 70.9 10.9 100 365-465 7-107 (137)
141 4f3v_A ESX-1 secretion system 98.3 7E-06 2.4E-10 76.9 14.2 185 277-466 18-239 (282)
142 2fbn_A 70 kDa peptidylprolyl i 98.3 3.2E-07 1.1E-11 82.7 4.9 172 272-465 11-187 (198)
143 3sz7_A HSC70 cochaperone (SGT) 98.3 2.1E-06 7.3E-11 74.5 10.0 97 367-464 11-108 (164)
144 1na0_A Designed protein CTPR3; 98.3 3.1E-06 1.1E-10 68.9 10.2 98 367-465 9-107 (125)
145 3gyz_A Chaperone protein IPGC; 98.3 1.6E-06 5.4E-11 74.0 8.5 100 332-435 37-138 (151)
146 1elw_A TPR1-domain of HOP; HOP 98.3 4E-06 1.4E-10 67.5 10.6 97 367-464 4-101 (118)
147 2e2e_A Formate-dependent nitri 98.3 3E-06 1E-10 74.5 10.3 127 307-438 21-152 (177)
148 2lni_A Stress-induced-phosphop 98.3 4.5E-06 1.5E-10 69.0 10.7 99 366-465 15-114 (133)
149 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-06 5.9E-11 73.7 7.9 104 331-438 21-126 (148)
150 2dba_A Smooth muscle cell asso 98.3 1.1E-05 3.9E-10 68.0 12.7 111 331-445 28-143 (148)
151 1elw_A TPR1-domain of HOP; HOP 98.2 7.8E-06 2.7E-10 65.7 10.8 109 332-444 5-115 (118)
152 4gcn_A Protein STI-1; structur 98.2 3.8E-06 1.3E-10 69.4 8.8 96 367-463 8-111 (127)
153 3gw4_A Uncharacterized protein 98.2 6E-06 2.1E-10 74.2 10.7 148 74-221 4-174 (203)
154 3sz7_A HSC70 cochaperone (SGT) 98.2 7.4E-06 2.5E-10 71.0 10.8 109 330-442 10-120 (164)
155 2xcb_A PCRH, regulatory protei 98.2 4.7E-06 1.6E-10 70.3 9.2 106 332-441 19-126 (142)
156 3upv_A Heat shock protein STI1 98.2 6.8E-06 2.3E-10 67.6 9.6 110 332-445 5-122 (126)
157 2c2l_A CHIP, carboxy terminus 98.2 8.5E-06 2.9E-10 77.8 11.5 95 128-223 4-101 (281)
158 2vyi_A SGTA protein; chaperone 98.2 7.7E-06 2.6E-10 67.2 9.9 99 366-465 11-110 (131)
159 1a17_A Serine/threonine protei 98.2 2.7E-05 9.1E-10 67.1 13.6 127 298-429 15-145 (166)
160 3q7a_A Farnesyltransferase alp 98.2 0.00055 1.9E-08 66.3 23.8 174 202-382 62-257 (349)
161 2dba_A Smooth muscle cell asso 98.2 1.8E-05 6.2E-10 66.7 12.2 100 366-465 27-129 (148)
162 2xev_A YBGF; tetratricopeptide 98.2 1.4E-05 4.8E-10 65.7 10.8 93 372-465 7-106 (129)
163 3rkv_A Putative peptidylprolyl 98.1 1.9E-05 6.4E-10 68.2 11.8 65 401-465 63-127 (162)
164 3q7a_A Farnesyltransferase alp 98.1 0.0019 6.6E-08 62.5 26.3 179 96-280 57-257 (349)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.6E-05 5.6E-10 81.6 12.6 96 367-463 317-414 (457)
166 3k9i_A BH0479 protein; putativ 98.1 2.7E-06 9.2E-11 69.1 5.2 84 380-464 3-90 (117)
167 1wao_1 Serine/threonine protei 98.1 1.6E-05 5.5E-10 82.1 12.3 115 306-425 16-134 (477)
168 4b4t_Q 26S proteasome regulato 98.1 5E-05 1.7E-09 77.3 15.6 165 299-463 58-244 (434)
169 3q49_B STIP1 homology and U bo 98.1 1.2E-05 4.2E-10 66.9 9.1 100 330-433 8-109 (137)
170 2hr2_A Hypothetical protein; a 98.1 1.5E-05 5.3E-10 67.3 9.6 94 371-464 15-131 (159)
171 1wao_1 Serine/threonine protei 98.1 6.6E-06 2.2E-10 85.0 8.7 119 338-460 13-135 (477)
172 1elr_A TPR2A-domain of HOP; HO 98.0 1.3E-05 4.3E-10 65.9 8.2 98 367-465 4-109 (131)
173 3ro3_A PINS homolog, G-protein 98.0 3.6E-05 1.2E-09 65.8 10.6 95 369-463 51-157 (164)
174 1p5q_A FKBP52, FK506-binding p 98.0 4.5E-05 1.5E-09 74.8 12.4 129 297-429 148-293 (336)
175 2kck_A TPR repeat; tetratricop 98.0 2.5E-05 8.7E-10 62.0 8.6 100 334-435 9-111 (112)
176 1ihg_A Cyclophilin 40; ppiase 98.0 3.3E-05 1.1E-09 76.7 11.1 90 367-457 273-363 (370)
177 2if4_A ATFKBP42; FKBP-like, al 97.9 1.2E-05 4.1E-10 79.0 7.2 148 297-465 180-329 (338)
178 3dss_A Geranylgeranyl transfer 97.9 0.0013 4.4E-08 63.4 20.6 188 246-441 90-315 (331)
179 3ro3_A PINS homolog, G-protein 97.9 7E-05 2.4E-09 63.9 10.8 133 299-431 12-159 (164)
180 1hxi_A PEX5, peroxisome target 97.9 2.7E-05 9.1E-10 63.5 7.5 96 336-435 22-119 (121)
181 2hr2_A Hypothetical protein; a 97.9 2.6E-05 9E-10 65.9 7.3 70 369-439 59-140 (159)
182 3k9i_A BH0479 protein; putativ 97.9 1.4E-05 4.9E-10 64.7 5.6 93 344-437 3-97 (117)
183 3n71_A Histone lysine methyltr 97.9 9.8E-05 3.4E-09 75.8 12.8 126 340-466 318-466 (490)
184 1elr_A TPR2A-domain of HOP; HO 97.9 3.7E-05 1.3E-09 63.0 8.1 109 334-445 7-122 (131)
185 2xev_A YBGF; tetratricopeptide 97.9 0.0002 6.8E-09 58.6 12.6 102 338-439 9-114 (129)
186 2fbn_A 70 kDa peptidylprolyl i 97.9 8.5E-05 2.9E-09 66.5 10.8 99 367-465 38-152 (198)
187 3rkv_A Putative peptidylprolyl 97.8 3.8E-05 1.3E-09 66.2 7.8 76 367-443 63-140 (162)
188 2l6j_A TPR repeat-containing p 97.8 3.2E-05 1.1E-09 61.5 6.5 94 365-459 2-102 (111)
189 4gcn_A Protein STI-1; structur 97.8 0.00027 9.4E-09 57.9 12.3 58 299-357 11-68 (127)
190 2if4_A ATFKBP42; FKBP-like, al 97.8 5.6E-05 1.9E-09 74.2 8.9 152 265-435 179-333 (338)
191 3ma5_A Tetratricopeptide repea 97.8 0.00011 3.9E-09 57.3 9.0 64 401-464 7-70 (100)
192 4b4t_Q 26S proteasome regulato 97.8 0.00045 1.5E-08 70.2 16.0 159 304-463 12-203 (434)
193 3dss_A Geranylgeranyl transfer 97.8 0.0011 3.8E-08 63.8 17.5 181 281-466 90-306 (331)
194 1na3_A Designed protein CTPR2; 97.7 9.7E-05 3.3E-09 56.1 8.0 82 367-449 9-91 (91)
195 2kat_A Uncharacterized protein 97.7 6.5E-05 2.2E-09 60.4 7.2 79 385-464 3-82 (115)
196 1dce_A Protein (RAB geranylger 97.7 0.0008 2.7E-08 70.7 17.4 169 280-453 44-244 (567)
197 1ihg_A Cyclophilin 40; ppiase 97.7 0.0002 6.9E-09 71.1 11.9 65 401-465 273-337 (370)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00026 9E-09 72.6 10.7 100 367-466 268-382 (457)
199 1zu2_A Mitochondrial import re 97.6 4.1E-05 1.4E-09 64.5 3.6 88 378-466 13-122 (158)
200 3bee_A Putative YFRE protein; 97.5 0.00067 2.3E-08 51.9 9.3 67 401-467 6-75 (93)
201 1na3_A Designed protein CTPR2; 97.4 0.00062 2.1E-08 51.5 8.2 66 400-465 8-73 (91)
202 2l6j_A TPR repeat-containing p 97.4 0.00064 2.2E-08 53.7 8.6 66 401-466 4-69 (111)
203 1klx_A Cysteine rich protein B 97.4 0.0025 8.5E-08 53.0 12.4 90 373-466 31-128 (138)
204 3n71_A Histone lysine methyltr 97.3 0.00079 2.7E-08 69.1 10.5 116 375-508 317-448 (490)
205 1zu2_A Mitochondrial import re 97.3 0.00016 5.4E-09 61.0 3.9 86 346-435 17-125 (158)
206 3qwp_A SET and MYND domain-con 97.2 0.0018 6.3E-08 65.2 11.7 118 374-509 294-427 (429)
207 2kat_A Uncharacterized protein 97.2 0.0011 3.9E-08 52.8 7.8 81 350-434 4-86 (115)
208 1klx_A Cysteine rich protein B 97.1 0.0039 1.3E-07 51.7 10.6 113 309-432 8-128 (138)
209 1dce_A Protein (RAB geranylger 97.1 0.0059 2E-07 64.1 14.1 150 310-465 43-222 (567)
210 3qww_A SET and MYND domain-con 97.1 0.00096 3.3E-08 67.2 7.6 85 379-463 310-410 (433)
211 2kc7_A BFR218_protein; tetratr 96.8 0.0029 9.9E-08 48.7 7.1 62 375-437 8-71 (99)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0053 1.8E-07 47.2 8.2 52 338-392 7-60 (99)
213 3ly7_A Transcriptional activat 96.6 0.013 4.4E-07 56.7 11.3 65 401-466 277-341 (372)
214 3qww_A SET and MYND domain-con 96.6 0.0082 2.8E-07 60.4 10.3 94 343-437 310-423 (433)
215 3ly7_A Transcriptional activat 96.6 0.06 2.1E-06 52.1 15.8 139 293-435 191-344 (372)
216 1qsa_A Protein (soluble lytic 96.6 0.93 3.2E-05 47.5 27.1 254 165-429 74-347 (618)
217 3ma5_A Tetratricopeptide repea 96.6 0.0072 2.5E-07 46.7 7.8 60 297-357 8-67 (100)
218 1pc2_A Mitochondria fission pr 96.6 0.0086 2.9E-07 49.8 8.4 64 401-464 32-100 (152)
219 3lvg_A Clathrin heavy chain 1; 96.5 0.00013 4.3E-09 71.9 -3.7 239 61-318 53-326 (624)
220 3qwp_A SET and MYND domain-con 96.5 0.013 4.4E-07 59.0 10.6 100 338-438 294-413 (429)
221 3mkq_A Coatomer beta'-subunit; 96.2 0.18 6.1E-06 55.5 19.5 150 104-289 610-760 (814)
222 1wy6_A Hypothetical protein ST 96.0 0.45 1.5E-05 38.1 14.7 139 308-467 19-157 (172)
223 3mkq_A Coatomer beta'-subunit; 95.6 0.12 4E-06 57.0 14.4 99 275-394 609-708 (814)
224 3bee_A Putative YFRE protein; 95.6 0.066 2.2E-06 40.6 8.4 78 365-444 4-85 (93)
225 2v5f_A Prolyl 4-hydroxylase su 95.5 0.066 2.3E-06 41.5 8.6 76 366-441 4-86 (104)
226 1pc2_A Mitochondria fission pr 95.3 0.067 2.3E-06 44.4 8.3 90 347-438 14-108 (152)
227 3u64_A Protein TP_0956; tetrat 95.3 0.059 2E-06 49.9 8.5 89 383-471 179-276 (301)
228 3mkq_B Coatomer subunit alpha; 95.0 1.3 4.6E-05 37.6 15.4 130 69-220 12-141 (177)
229 1nzn_A CGI-135 protein, fissio 94.0 1 3.5E-05 35.8 11.8 91 347-439 17-112 (126)
230 1nzn_A CGI-135 protein, fissio 94.0 0.24 8.2E-06 39.5 8.1 65 401-465 35-104 (126)
231 3u64_A Protein TP_0956; tetrat 93.9 0.081 2.8E-06 49.0 6.0 83 348-433 180-272 (301)
232 4gns_B Protein CSD3, chitin bi 93.6 0.28 9.4E-06 52.5 10.3 55 408-462 344-398 (754)
233 3mkq_B Coatomer subunit alpha; 93.4 2.5 8.5E-05 35.9 13.8 46 173-220 15-60 (177)
234 3lvg_A Clathrin heavy chain 1; 93.3 0.0027 9.1E-08 62.8 -5.1 237 164-421 55-324 (624)
235 2v5f_A Prolyl 4-hydroxylase su 93.3 0.26 9E-06 38.0 7.3 65 401-465 5-76 (104)
236 1wy6_A Hypothetical protein ST 93.2 2.5 8.6E-05 33.9 12.3 139 105-262 19-157 (172)
237 1y8m_A FIS1; mitochondria, unk 92.8 3.2 0.00011 33.7 12.9 64 401-464 39-106 (144)
238 4b4t_P 26S proteasome regulato 92.0 6.8 0.00023 39.3 17.5 163 134-296 143-326 (445)
239 4ady_A RPN2, 26S proteasome re 91.1 19 0.00064 39.5 20.3 303 66-378 343-672 (963)
240 2wpv_A GET4, UPF0363 protein Y 90.8 11 0.00037 35.5 19.5 169 165-360 35-217 (312)
241 4h7y_A Dual specificity protei 89.4 1.5 5E-05 36.0 7.7 55 413-467 72-126 (161)
242 2p58_C Putative type III secre 88.9 5.6 0.00019 29.8 9.7 87 142-234 21-107 (116)
243 2ff4_A Probable regulatory pro 88.4 1 3.4E-05 44.5 7.7 70 402-471 172-246 (388)
244 4gns_B Protein CSD3, chitin bi 88.3 4.3 0.00015 43.4 12.7 125 65-190 251-398 (754)
245 2uwj_G Type III export protein 87.9 5.3 0.00018 29.9 9.1 87 142-234 20-106 (115)
246 1qsa_A Protein (soluble lytic 87.4 31 0.001 36.1 37.8 437 4-468 15-483 (618)
247 3lpz_A GET4 (YOR164C homolog); 87.0 21 0.00072 33.8 22.2 167 166-359 38-215 (336)
248 3o48_A Mitochondria fission 1 86.0 5 0.00017 32.1 8.8 45 419-463 61-106 (134)
249 1v54_E Cytochrome C oxidase po 85.5 3.6 0.00012 31.0 7.2 62 312-375 26-87 (109)
250 2qx5_A Nucleoporin NIC96; mRNA 84.4 21 0.00072 37.5 15.3 80 200-291 300-382 (661)
251 4fhn_B Nucleoporin NUP120; pro 84.3 18 0.00062 41.2 16.2 126 336-467 817-970 (1139)
252 3ffl_A Anaphase-promoting comp 83.9 7.3 0.00025 32.6 9.3 31 366-396 121-151 (167)
253 3ffl_A Anaphase-promoting comp 83.8 0.97 3.3E-05 37.8 4.0 27 436-462 123-149 (167)
254 1wdy_A 2-5A-dependent ribonucl 83.1 14 0.00047 33.8 12.5 208 67-289 7-240 (285)
255 2wpv_A GET4, UPF0363 protein Y 82.9 31 0.0011 32.3 17.5 135 62-207 33-178 (312)
256 4h7y_A Dual specificity protei 82.5 13 0.00045 30.5 10.0 62 107-169 74-135 (161)
257 2ff4_A Probable regulatory pro 82.4 9.1 0.00031 37.5 11.2 68 302-370 177-248 (388)
258 3lpz_A GET4 (YOR164C homolog); 80.7 39 0.0013 32.0 20.1 134 63-207 36-180 (336)
259 1zbp_A Hypothetical protein VP 79.5 14 0.00049 33.6 10.3 50 307-357 8-57 (273)
260 1v54_E Cytochrome C oxidase po 79.2 13 0.00043 28.1 8.0 61 393-467 39-99 (109)
261 3txn_A 26S proteasome regulato 79.1 48 0.0016 32.3 14.8 54 337-390 105-162 (394)
262 2y69_E Cytochrome C oxidase su 77.4 11 0.00036 30.2 7.5 60 314-375 71-130 (152)
263 4b4t_P 26S proteasome regulato 77.0 36 0.0012 33.9 13.8 188 207-394 29-245 (445)
264 4fhn_B Nucleoporin NUP120; pro 76.8 36 0.0012 38.7 15.3 116 237-357 819-964 (1139)
265 3o48_A Mitochondria fission 1 76.4 16 0.00054 29.2 8.5 73 364-436 37-113 (134)
266 2uwj_G Type III export protein 75.0 24 0.00082 26.4 8.5 78 245-326 21-98 (115)
267 2p58_C Putative type III secre 74.2 25 0.00086 26.4 8.8 78 245-326 22-99 (116)
268 3kea_A K1L; tropism, ANK repea 71.8 23 0.00079 32.6 10.3 19 170-188 133-151 (285)
269 2qx5_A Nucleoporin NIC96; mRNA 71.5 1E+02 0.0036 32.3 19.3 32 367-398 533-569 (661)
270 1y8m_A FIS1; mitochondria, unk 68.7 45 0.0015 27.0 12.8 74 364-437 36-113 (144)
271 1zbp_A Hypothetical protein VP 67.3 9.8 0.00034 34.6 6.1 60 375-435 5-65 (273)
272 2y69_E Cytochrome C oxidase su 66.3 33 0.0011 27.4 8.0 62 392-467 81-142 (152)
273 3ltj_A Alpharep-4; protein eng 65.8 62 0.0021 27.5 18.2 80 60-143 26-105 (201)
274 4ady_A RPN2, 26S proteasome re 65.8 1.6E+02 0.0056 32.3 30.9 248 173-428 384-656 (963)
275 3ltj_A Alpharep-4; protein eng 62.4 72 0.0025 27.1 19.1 18 228-245 88-105 (201)
276 3ltm_A Alpha-REP4; protein eng 60.9 79 0.0027 27.1 18.3 17 264-280 125-141 (211)
277 3ltm_A Alpha-REP4; protein eng 60.2 82 0.0028 27.0 18.0 48 61-108 32-79 (211)
278 3esl_A Checkpoint serine/threo 59.7 83 0.0028 27.2 10.2 65 403-468 82-148 (202)
279 3mv2_A Coatomer subunit alpha; 59.5 96 0.0033 29.0 11.3 62 390-465 196-257 (325)
280 1k1a_A B-cell lymphoma 3-encod 58.6 70 0.0024 27.9 10.6 83 103-189 16-102 (241)
281 1n11_A Ankyrin; clathrin, BAND 58.2 75 0.0026 31.1 11.7 21 69-89 18-38 (437)
282 4b4t_R RPN7, 26S proteasome re 57.0 58 0.002 32.2 10.4 96 94-189 132-234 (429)
283 1k1a_A B-cell lymphoma 3-encod 53.4 1.1E+02 0.0039 26.5 11.1 84 135-219 13-101 (241)
284 3eiq_C Programmed cell death p 53.1 1E+02 0.0036 29.4 10.9 64 268-331 220-288 (358)
285 4b4t_R RPN7, 26S proteasome re 52.1 81 0.0028 31.1 10.5 57 267-323 133-195 (429)
286 3hra_A Ankyrin repeat family p 49.2 97 0.0033 26.0 9.6 51 72-127 12-66 (201)
287 1wdy_A 2-5A-dependent ribonucl 48.7 67 0.0023 28.9 8.9 18 171-188 44-61 (285)
288 3eu9_A Huntingtin-interacting 47.5 75 0.0026 27.6 8.9 16 173-188 116-131 (240)
289 3txn_A 26S proteasome regulato 47.5 2.1E+02 0.007 27.8 22.6 277 65-360 22-343 (394)
290 4b4t_S RPN3, 26S proteasome re 44.6 87 0.003 31.6 9.1 61 62-122 231-299 (523)
291 3kea_A K1L; tropism, ANK repea 40.9 54 0.0019 30.0 6.9 89 374-469 133-222 (285)
292 3hra_A Ankyrin repeat family p 40.5 94 0.0032 26.1 8.1 152 103-264 12-172 (201)
293 3b7b_A Euchromatic histone-lys 40.4 83 0.0028 27.4 7.9 18 340-357 216-233 (237)
294 2pk8_A Uncharacterized protein 39.7 19 0.00066 26.2 2.5 49 490-547 11-59 (103)
295 2nsz_A Programmed cell death p 39.1 1.2E+02 0.004 24.0 7.5 61 65-125 10-75 (129)
296 2rfa_A Transient receptor pote 39.0 98 0.0034 26.8 8.1 21 138-158 161-181 (232)
297 4a1g_A Mitotic checkpoint seri 38.9 1.6E+02 0.0055 24.1 9.0 51 418-468 82-134 (152)
298 2zu6_B Programmed cell death p 38.3 1.6E+02 0.0056 27.3 9.5 57 65-121 6-66 (307)
299 3eiq_C Programmed cell death p 38.2 2.7E+02 0.0093 26.5 12.0 29 165-193 56-84 (358)
300 3bqo_A Telomeric repeat-bindin 37.8 1.6E+02 0.0056 25.2 8.3 54 383-436 94-152 (211)
301 2lo3_A SAGA-associated factor 37.4 14 0.00048 22.3 1.3 13 560-572 15-27 (44)
302 2d2s_A Exocyst complex compone 35.5 1.1E+02 0.0038 27.1 7.6 86 303-392 25-116 (235)
303 2nsz_A Programmed cell death p 35.4 1.3E+02 0.0043 23.8 7.2 62 268-329 10-76 (129)
304 3eu9_A Huntingtin-interacting 35.2 83 0.0029 27.3 7.0 17 172-188 82-98 (240)
305 4gq2_M Nucleoporin NUP120; bet 34.9 4E+02 0.014 29.4 13.6 88 337-430 816-926 (950)
306 2r9g_A AAA ATPase, central reg 34.4 1.7E+02 0.0059 25.1 8.0 63 96-159 14-84 (204)
307 2wvi_A Mitotic checkpoint seri 33.1 2.1E+02 0.0071 23.7 9.3 50 419-468 78-129 (164)
308 3jxi_A Vanilloid receptor-rela 32.8 62 0.0021 28.9 5.8 88 102-190 11-117 (260)
309 1oyz_A Hypothetical protein YI 32.6 2.7E+02 0.0093 24.9 22.5 18 263-280 140-157 (280)
310 2l0z_A Glycoprotein G2; zinc-b 31.7 12 0.00041 22.4 0.4 18 587-604 11-29 (42)
311 2ion_A PDCD4, programmed cell 31.3 1E+02 0.0035 25.2 6.2 61 65-125 12-77 (152)
312 2d2s_A Exocyst complex compone 31.0 1.7E+02 0.0057 26.0 8.0 23 99-121 24-46 (235)
313 1n11_A Ankyrin; clathrin, BAND 30.9 2.3E+02 0.0077 27.5 10.1 81 100-188 18-102 (437)
314 1oai_A Nuclear RNA export fact 30.9 32 0.0011 22.9 2.4 25 207-231 33-57 (59)
315 2k0q_A Putative uncharacterize 30.0 15 0.00051 25.1 0.7 22 581-602 8-29 (74)
316 3bge_A Predicted ATPase; struc 29.2 2.6E+02 0.0089 23.9 8.2 68 302-385 10-81 (201)
317 3qye_A TBC1 domain family memb 29.0 3.6E+02 0.012 25.1 11.4 108 108-219 164-287 (331)
318 2r9g_A AAA ATPase, central reg 28.9 2.8E+02 0.0095 23.8 9.8 44 301-345 16-62 (204)
319 3ctd_A Putative ATPase, AAA fa 27.0 2.1E+02 0.0073 24.7 7.4 68 92-159 31-106 (213)
320 2fr5_A Cytidine deaminase; tet 27.0 1.3E+02 0.0044 24.4 5.9 56 531-588 59-120 (146)
321 2ion_A PDCD4, programmed cell 26.4 1.2E+02 0.0043 24.7 5.8 62 268-329 12-78 (152)
322 3mkr_B Coatomer subunit alpha; 25.8 2.1E+02 0.0072 26.7 7.8 63 390-466 187-249 (320)
323 3ljn_A Hypothetical protein; a 25.8 2.2E+02 0.0075 26.7 8.7 213 66-289 21-265 (364)
324 3ygs_P Procaspase 9; apoptosis 25.3 88 0.003 23.2 4.3 63 47-113 24-88 (97)
325 3aji_A 26S proteasome non-ATPa 25.2 1.8E+02 0.006 25.0 7.3 19 170-188 143-161 (231)
326 2zu6_B Programmed cell death p 24.3 4.3E+02 0.015 24.5 13.3 56 166-221 6-65 (307)
327 2pnn_A Transient receptor pote 24.0 1.6E+02 0.0056 26.2 7.0 18 172-189 107-124 (273)
328 3ygs_P Procaspase 9; apoptosis 23.9 95 0.0033 23.0 4.3 38 177-214 51-88 (97)
329 3ctd_A Putative ATPase, AAA fa 23.8 3.6E+02 0.012 23.4 8.9 47 299-345 35-84 (213)
330 3bge_A Predicted ATPase; struc 23.8 2.7E+02 0.0091 23.9 7.3 42 97-138 8-52 (201)
331 4b4t_S RPN3, 26S proteasome re 23.3 1.5E+02 0.0053 29.9 6.8 62 331-392 231-295 (523)
332 4g8k_A 2-5A-dependent ribonucl 23.1 3.7E+02 0.013 24.7 9.6 106 45-162 217-328 (337)
333 3aji_A 26S proteasome non-ATPa 22.9 2.7E+02 0.0091 23.8 8.1 17 71-87 12-28 (231)
334 2fe3_A Peroxide operon regulat 22.6 1.9E+02 0.0066 23.1 6.3 35 144-178 37-71 (145)
335 2d30_A Cytidine deaminase; pur 22.6 89 0.003 25.2 4.1 84 503-587 17-116 (141)
336 3b7b_A Euchromatic histone-lys 22.5 3.3E+02 0.011 23.3 8.7 131 49-189 26-167 (237)
337 3e3v_A Regulatory protein RECX 22.4 3.4E+02 0.012 22.6 9.9 81 316-398 87-168 (177)
338 2fe3_A Peroxide operon regulat 22.4 1.9E+02 0.0065 23.2 6.3 64 320-385 11-74 (145)
339 1qc6_A EVH1 domain from ENA/VA 22.2 25 0.00085 28.1 0.7 41 553-601 44-88 (130)
340 3jxi_A Vanilloid receptor-rela 21.3 1.1E+02 0.0039 27.0 5.3 24 6-29 13-36 (260)
341 1wgl_A TOLL-interacting protei 21.2 1E+02 0.0036 20.4 3.5 23 105-127 35-57 (59)
342 4g8k_A 2-5A-dependent ribonucl 20.9 4.9E+02 0.017 23.9 12.9 79 250-333 219-303 (337)
343 3twr_A Tankyrase-2; ankyrin re 20.8 3E+02 0.01 21.8 7.6 17 71-87 14-30 (165)
344 3bu8_A Telomeric repeat-bindin 20.7 4.2E+02 0.014 23.1 8.2 51 347-397 88-144 (235)
345 4gq2_M Nucleoporin NUP120; bet 20.6 5.7E+02 0.02 28.2 11.5 127 169-310 816-950 (950)
346 1ug3_A EIF4GI, eukaryotic prot 20.4 5.3E+02 0.018 24.1 10.1 140 167-321 15-166 (339)
347 2p1h_A APAF-1, apoptotic prote 20.3 2.5E+02 0.0086 20.3 6.8 62 148-213 25-86 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-39 Score=347.14 Aligned_cols=451 Identities=11% Similarity=-0.045 Sum_probs=331.4
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHH---HHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhH
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISL---ASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 80 (605)
.+.+.|++++|+.++++|.. ..|+..++..+...+.+.++. ..++..+. ..++++.+++.++.+|.++|++++
T Consensus 93 ~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 93 DALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED--LYNRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC--GGGTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh--ccccchhHHHHHHHHHHHHhhHHH
Confidence 34445555555555555542 233444444444444444333 22222221 124455555555555555555555
Q ss_pred HHHHHhcC-CCC------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhc
Q 039695 81 ARQLFDEM-LEP------------------NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN-EFTFATVIKACSM 140 (605)
Q Consensus 81 A~~~f~~m-~~~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd-~~t~~~ll~a~~~ 140 (605)
|.++|+++ +.. ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+..
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCS
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcc
Confidence 55555533 221 24555555555555555555555555555432 22 2222222222211
Q ss_pred cCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChhHHHH
Q 039695 141 LADLIT--GKQI-HTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALE 215 (605)
Q Consensus 141 ~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~ 215 (605)
.+..+. +..+ +..+...+..+...+|+.++.+|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|++
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 111111 0011 22222222233344566667888899999999999999988 899999999999999999999999
Q ss_pred HHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 039695 216 MFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-- 293 (605)
Q Consensus 216 ~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 293 (605)
+|+++...+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+
T Consensus 327 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 327 ITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999865 4578889999999999999999999999999765 66789999999999999999999999998753
Q ss_pred -CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 039695 294 -PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTC 372 (605)
Q Consensus 294 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 372 (605)
.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 480 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNE 480 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 567799999999999999999999999999863 347889999999999999999999999999643 2335889999
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQ-------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
++.+|.+.|++++|.++|+++. ..|+....+|..++.+|...|++++|++.++++++.+|+++.+|..++.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999863 345422579999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 039695 446 ALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.+.|++++|.+.++++.+...
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999988543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-35 Score=321.35 Aligned_cols=381 Identities=11% Similarity=-0.052 Sum_probs=322.1
Q ss_pred HHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHH
Q 039695 70 NCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQ 149 (605)
Q Consensus 70 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 149 (605)
..+.+.|.+..+...|..++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|++++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3466788899999999999999999999999999999999999999999985 56888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-C------------------ChhhHHHHHHHHHHcCCh
Q 039695 150 IHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-R------------------NVVSWTSIIVAHAQNAQG 210 (605)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~------------------~~~~~~~li~~~~~~g~~ 210 (605)
+|+.+... +++..+++.++.+|.++|++++|.++|+++.. . ++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987643 68899999999999999999999999996543 3 488999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCC-hhH--------------------------------------HHhHHHhhcccCchhhHHH
Q 039695 211 HEALEMFREFNYQSRDRPN-QHM--------------------------------------LASVINACASLGRLVSGKV 251 (605)
Q Consensus 211 ~~A~~~~~~m~~~~~~~p~-~~t--------------------------------------~~~ll~a~~~~~~~~~a~~ 251 (605)
++|+++|++|...+ |+ ... |..++..|.+.|++++|.+
T Consensus 217 ~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 217 DRAKECYKEALMVD---AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999998865 32 222 2333667778899999999
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 039695 252 AHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK 328 (605)
Q Consensus 252 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 328 (605)
++..+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|+.++|..+|+++... .+
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 370 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HP 370 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cc
Confidence 99988876 5889999999999999999999999999986 357789999999999999999999999999865 34
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHH
Q 039695 329 PNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGT 406 (605)
Q Consensus 329 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ 406 (605)
.+..++..+...|.+.|++++|.++|+.+.+ +.| +..+|+.++.+|.+.|++++|+++|+++. ..|+ +..+|..
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 446 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSST---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLF 446 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 5788999999999999999999999999964 345 48899999999999999999999999864 3332 2789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
++.+|...|++++|.+.|+++++..|.++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999876
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.8e-28 Score=254.67 Aligned_cols=182 Identities=10% Similarity=0.144 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCc---------hhhHHHHHHHHHHhCCCCcHh
Q 039695 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR---------LVSGKVAHGVVVRSGCEFNDV 266 (605)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 266 (605)
.++.+|.+|++.|+.++|+++|++|.+.| ++||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45566666666666666666666666666 77777777777777665443 456677777777777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 039695 267 VASALVDMYAKCGSVNYSDKVFNRIS----NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACS 342 (605)
Q Consensus 267 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 342 (605)
+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777765 36777777777777777777777777777777777777777777777777
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh
Q 039695 343 HSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR 379 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 379 (605)
+.|++++|.+++++| ++.+..|+..+|+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777 455777777777777777654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.7e-26 Score=231.80 Aligned_cols=372 Identities=12% Similarity=0.032 Sum_probs=269.9
Q ss_pred HHHHcCCChhHHHHHHhcCC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH
Q 039695 70 NCYVRLKKTQVARQLFDEML--EP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT 146 (605)
Q Consensus 70 ~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 146 (605)
..+.+.|++++|.+.|+++. .| +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 44556777788777777662 23 44556666667777777777777777776642 2356677777777777788888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 147 GKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--R-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQ 223 (605)
Q Consensus 147 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 223 (605)
|.+.++.+.+.. +.+...+..+..+|.+.|++++|.+.|+++.. | +...+..+...+...|++++|++.|+++...
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888777777754 34455677777777777888777777777643 3 3445666677777778888888888777764
Q ss_pred CCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHH
Q 039695 224 SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYT 300 (605)
Q Consensus 224 ~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~ 300 (605)
. +.+..++..+...+...|++++|...++.+++.. +.+...+..+...+...|++++|...|++..+ .+..+|.
T Consensus 165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 3 3346677777777777778888887777777765 44566777778888888888888888776642 3456777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhc
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 380 (605)
.+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.|+.+.+. .+++...+..+...+.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHc
Confidence 88888888888888888888887742 224567777888888888888888888887643 234577788888888888
Q ss_pred CCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 381 GRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 381 g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
|++++|.+.++++. ..|+ +..+|..+..++...|++++|...++++++..|+++.+|..++.+|...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 88888888888754 3343 266788888888888888888888888888888888888888887776653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.8e-28 Score=253.33 Aligned_cols=182 Identities=12% Similarity=0.082 Sum_probs=129.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCchhH
Q 039695 95 SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD---------LITGKQIHTHIETFGFQYNLVV 165 (605)
Q Consensus 95 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 165 (605)
.++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765443 4667777777777777777777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc
Q 039695 166 CSSLVDMYGKCNDVDGARRVFDLMGC----RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA 241 (605)
Q Consensus 166 ~~~Li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 241 (605)
||+||++|++.|++++|.++|++|.. ||..+||++|.+|++.|+.++|.++|++|.+.| +.||..||+++|.+|+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-VVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHh
Confidence 77777777777777777777777643 677777777777777777777777777777777 7777777777777777
Q ss_pred ccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 039695 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277 (605)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 277 (605)
+.|++++|.++++.|.+.|..|+..+|+.+++.|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.4e-25 Score=228.27 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=307.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 039695 100 MAGYINMGQPQIALLLFQKMLGNLVWPN-EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178 (605)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 178 (605)
...+.+.|++++|+..+.++.+. .|+ ...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667889999999999998875 354 4456666677888999999999999998875 6688899999999999999
Q ss_pred HHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHH
Q 039695 179 VDGARRVFDLMGC--R-NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGV 255 (605)
Q Consensus 179 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 255 (605)
+++|...|+++.. | +..+|..+..++.+.|++++|++.|.++.... +.+...+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998853 3 45679999999999999999999999998754 33445667777888889999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CH
Q 039695 256 VVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-ND 331 (605)
Q Consensus 256 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~ 331 (605)
+.+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 55678999999999999999999999999863 34567888999999999999999999999885 34 57
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
.++..+..++...|++++|.+.|+.+.+ ..|+ ...|..+...|.+.|++++|.+.++++. ..|+ +..+|..+..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 313 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHH
Confidence 8888999999999999999999999864 4564 7889999999999999999999998864 2333 2789999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999874
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3.1e-22 Score=207.70 Aligned_cols=324 Identities=12% Similarity=0.076 Sum_probs=219.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039695 92 NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171 (605)
Q Consensus 92 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 171 (605)
++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666667777777777777777766542 2245566666666777777777777777776664 345666667777
Q ss_pred HHHhCCCHHHHHHHHhhcCC--C-Ch---hhHHHHHH------------HHHHcCChhHHHHHHHHHHHcCCCCCChhHH
Q 039695 172 MYGKCNDVDGARRVFDLMGC--R-NV---VSWTSIIV------------AHAQNAQGHEALEMFREFNYQSRDRPNQHML 233 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 233 (605)
+|.+.|++++|.+.|+++.. | +. ..|..++. .+.+.|++++|+..|+++....
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------- 173 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------- 173 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 77777777777777776644 2 22 44444433 3555666666666666665432
Q ss_pred HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcC
Q 039695 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYG 310 (605)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 310 (605)
+.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|
T Consensus 174 ----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 174 ----------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp ----------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred ----------------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 22344445555555555555555555555432 34556666677777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCH-HHHHH------------HHHHHhccCcHHHHHHHHHHHHHhcCCCCc-----HHHHHH
Q 039695 311 LGRFSLDLFNEMISRGIKPND-VTFVG------------VLHACSHSGLVDEGIQHLDSMYRKYGIIPD-----AKHYTC 372 (605)
Q Consensus 311 ~~~~A~~l~~~m~~~g~~pd~-~t~~~------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ 372 (605)
++++|+..|+++... .|+. ..+.. +..+|.+.|++++|...|+.+... .|+ ..+|..
T Consensus 226 ~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 226 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKER 300 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHH
Confidence 777777777777653 3332 22322 277888999999999999998653 454 458899
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH---------
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS--------- 442 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--------- 442 (605)
+..++.+.|++++|++.++++. ..|+ +..+|..+..+|...|++++|...+++++++.|+++.++..+.
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998853 3443 2789999999999999999999999999999999999998888
Q ss_pred ---HHHHhcC-----ChhHHHHHHHH
Q 039695 443 ---NTYALAG-----EWENVHSLRSE 460 (605)
Q Consensus 443 ---~~y~~~g-----~~~~a~~~~~~ 460 (605)
+.|...| +.+++.+.+++
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHH
Confidence 4455556 44555665554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-22 Score=213.38 Aligned_cols=396 Identities=11% Similarity=-0.016 Sum_probs=312.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039695 63 FTLNHLINCYVRLKKTQVARQLFDEML--EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140 (605)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 140 (605)
..+..+...|.+.|++++|...|+++. .|++..|..+..+|.+.|++++|+..|+++.+.+. .+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 445566778888999999999999883 47888999999999999999999999999887542 255688888889999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHH----------------------------------
Q 039695 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVF---------------------------------- 186 (605)
Q Consensus 141 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~---------------------------------- 186 (605)
.|++++|...++.+.+.+ +++......++..+.+......+.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999988876 344444444544444332222222222
Q ss_pred ----hhcCC----------CChhhHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCCCC--------ChhHHHhH
Q 039695 187 ----DLMGC----------RNVVSWTSIIVAHAQ---NAQGHEALEMFREFNY-----QSRDRP--------NQHMLASV 236 (605)
Q Consensus 187 ----~~m~~----------~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~~p--------~~~t~~~l 236 (605)
..... .+...|......+.. .|++++|+..|+++.. .. ..| +..++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD-KNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc-cCccccccChHHHHHHHHH
Confidence 11110 113344444444554 8999999999999987 32 122 34567778
Q ss_pred HHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChh
Q 039695 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGR 313 (605)
Q Consensus 237 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 313 (605)
...+...|+++.|...+..+.+.... ..++..+...|...|++++|...|+.+.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987644 88899999999999999999999998764 46678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 039695 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (605)
+|+..|++...... .+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998532 356788889999999999999999999986542 224778889999999999999999999875
Q ss_pred C-CCCCc-----hhhHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 394 Q-VDPDG-----GPLLWGTLLSASRL---HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 394 ~-~~p~~-----~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
. ..|+. ....|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3 12221 02389999999999 999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 039695 465 GI 466 (605)
Q Consensus 465 ~~ 466 (605)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=7.7e-21 Score=197.15 Aligned_cols=365 Identities=10% Similarity=0.019 Sum_probs=254.7
Q ss_pred CCchHHHHHHHHHHHcCCChhHHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 039695 59 LSNTFTLNHLINCYVRLKKTQVARQLFDEML---EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135 (605)
Q Consensus 59 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll 135 (605)
+.++..+..+...|.+.|++++|..+|+++. ..+..+|..+..+|.+.|++++|+..|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 4567788899999999999999999999873 35788999999999999999999999999988643 2567888999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHHhCCCHHHHHHHHhhcCC---CChhhH
Q 039695 136 KACSMLADLITGKQIHTHIETFGFQYNL---VVCSSL------------VDMYGKCNDVDGARRVFDLMGC---RNVVSW 197 (605)
Q Consensus 136 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~L------------i~~y~~~g~~~~A~~~~~~m~~---~~~~~~ 197 (605)
.++...|++++|.+.++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.. .+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999998764 3344 555555 4448999999999999998753 567889
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 039695 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277 (605)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 277 (605)
..+...|.+.|++++|++.|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~--- 254 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV--- 254 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH---
Confidence 999999999999999999999998764 4567778888888888888888888888887654 2233333332100
Q ss_pred cCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHH
Q 039695 278 CGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN-----DVTFVGVLHACSHSGLVDEGIQ 352 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~ 352 (605)
+ ....+..+...+.+.|++++|+.+|+++... .|+ ...+..+..++.+.|++++|..
T Consensus 255 -~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 255 -K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp -H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0 0011222355566666666666666666653 233 2355566666666677777766
Q ss_pred HHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHH------------HHHcC---
Q 039695 353 HLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSA------------SRLHG--- 415 (605)
Q Consensus 353 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~------------~~~~g--- 415 (605)
.++.+... .| +...|..+..+|...|++++|.+.++++ ...|+ +...+..+..+ |...|
T Consensus 317 ~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 317 VCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 66666432 33 3566666666666777777777666653 23343 24445444422 22333
Q ss_pred --ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCChhH
Q 039695 416 --RVDIAVEASNQ-LIESNQQVAN----------AYVTLSNTYALAGEWEN 453 (605)
Q Consensus 416 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~y~~~g~~~~ 453 (605)
+.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56677888886 6677776532 34445555555555443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9.9e-21 Score=199.77 Aligned_cols=388 Identities=11% Similarity=-0.006 Sum_probs=293.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 45 SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML---EPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121 (605)
Q Consensus 45 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 121 (605)
.+...+..+++.. |++.++..+..+|.+.|++++|...|+++. ..+..+|..+..+|.+.|++++|+..|+++..
T Consensus 24 ~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (514)
T 2gw1_A 24 DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSL 101 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3355555555544 567778888888888888888888888763 23567788888888888888888888888887
Q ss_pred CCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------------hCC-------
Q 039695 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIET-----------------------------------FGF------- 159 (605)
Q Consensus 122 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-----------------------------------~g~------- 159 (605)
.+. ++......++..+........+.+.+..+.. ...
T Consensus 102 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
T 2gw1_A 102 NGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180 (514)
T ss_dssp SSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSC
T ss_pred cCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHh
Confidence 653 3444444444433322222222221111100 000
Q ss_pred --CCchhHHHHHHHHHHh---CCCHHHHHHHHhhcCC-----------------CChhhHHHHHHHHHHcCChhHHHHHH
Q 039695 160 --QYNLVVCSSLVDMYGK---CNDVDGARRVFDLMGC-----------------RNVVSWTSIIVAHAQNAQGHEALEMF 217 (605)
Q Consensus 160 --~~~~~~~~~Li~~y~~---~g~~~~A~~~~~~m~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~ 217 (605)
+.+...+..+...+.. .|++++|...|+++.. .+..+|..+...+...|++++|+..|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1124444445554554 8999999999987644 13467888899999999999999999
Q ss_pred HHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---C
Q 039695 218 REFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---P 294 (605)
Q Consensus 218 ~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~ 294 (605)
+++.... |+..++..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .
T Consensus 261 ~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 261 KKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 9998865 447888888999999999999999999998865 45677889999999999999999999998752 4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHHH
Q 039695 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKHY 370 (605)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 370 (605)
+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.....-.|+ ...+
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 56789999999999999999999999998852 335678888999999999999999999988654333333 4488
Q ss_pred HHHHHHHhh---cCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 039695 371 TCVVDMLGR---TGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441 (605)
Q Consensus 371 ~~li~~~~~---~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (605)
..+...|.+ .|++++|.+.+++.. ..|+ +..+|..+...+...|++++|...++++++..|.++..+..+
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 899999999 999999999998853 3343 277899999999999999999999999999999987766655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=6.7e-20 Score=194.63 Aligned_cols=389 Identities=12% Similarity=0.020 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039695 63 FTLNHLINCYVRLKKTQVARQLFDEML---EPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139 (605)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~ 139 (605)
..+..+...|.+.|++++|.+.|+++. ..++.+|..+..+|.+.|++++|++.|+++.+.+. .+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 345556666677777777777777662 23566677777777777777777777777766432 24556666667777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc------------------------------
Q 039695 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLM------------------------------ 189 (605)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m------------------------------ 189 (605)
..|++++|...++ .... .|+. .+..+..+...+....|...++++
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777774 2211 1211 111222333333334444444443
Q ss_pred -------CCCChh---hHHHHHHHHHH--------cCChhHHHHHHHHHHHcCCCCCC--------hhHHHhHHHhhccc
Q 039695 190 -------GCRNVV---SWTSIIVAHAQ--------NAQGHEALEMFREFNYQSRDRPN--------QHMLASVINACASL 243 (605)
Q Consensus 190 -------~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~--------~~t~~~ll~a~~~~ 243 (605)
...+.. .+..+...+.. .|++++|+.+|+++.... |+ ..++..+...+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhc
Confidence 322221 22223222222 257899999999988654 44 22456666777888
Q ss_pred CchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHH
Q 039695 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFN 320 (605)
Q Consensus 244 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 320 (605)
|+++.|...+..+.+.. |+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|...|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 4478888999999999999999999998763 456789999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----C
Q 039695 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ----V 395 (605)
Q Consensus 321 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~ 395 (605)
+..... +.+..++..+...+...|++++|...++.+.+. .| +...+..+...|.+.|++++|.+.++++. .
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 998853 224678888999999999999999999999654 34 47788899999999999999999998753 1
Q ss_pred CCC--chhhHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 396 DPD--GGPLLWGTLLSASRLH----------GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 396 ~p~--~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.++ .....+..+...+... |++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 1123355566777777 9999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 039695 464 TGI 466 (605)
Q Consensus 464 ~~~ 466 (605)
...
T Consensus 491 ~~~ 493 (537)
T 3fp2_A 491 LAR 493 (537)
T ss_dssp HC-
T ss_pred hCC
Confidence 654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.4e-18 Score=172.16 Aligned_cols=326 Identities=11% Similarity=0.056 Sum_probs=194.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039695 92 NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVD 171 (605)
Q Consensus 92 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 171 (605)
|+..|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345677777778888888888888888776432 245567777777777788888888887777764 345566777777
Q ss_pred HHHhCCCHHHHHHHHhhcCC--C----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCc
Q 039695 172 MYGKCNDVDGARRVFDLMGC--R----NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR 245 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~ 245 (605)
+|.+.|++++|...|++... | +...|..+...+. ...+......+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 77777777777777776644 2 2223333310000 0000111223333444
Q ss_pred hhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322 (605)
Q Consensus 246 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 322 (605)
+++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444332 23344555555556666666666666655442 33455666666666666777777777666
Q ss_pred HHcCCCCC-HHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHH
Q 039695 323 ISRGIKPN-DVTFV------------GVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 323 ~~~g~~pd-~~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 387 (605)
.+. .|+ ...+. .+...+...|++++|...++.+.....-.|. ...+..+...|.+.|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 653 222 22211 2245566777777777777777543211111 123455667777778888888
Q ss_pred HHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039695 388 KLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447 (605)
Q Consensus 388 ~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 447 (605)
+.+++.. ..|+ ++.+|..+...+...|++++|...++++++.+|+++.++..+..++..
T Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7777643 2332 266777778888888888888888888888888777766666655543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=7.4e-19 Score=186.55 Aligned_cols=383 Identities=11% Similarity=0.007 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 45 SLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEML---EPNVVSYTSLMAGYINMGQPQIALLLFQKMLG 121 (605)
Q Consensus 45 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 121 (605)
.+...+..+++.. +.++..+..+..+|.+.|++++|.+.|++.. ..++.+|..+...+...|++++|+..|+.+ .
T Consensus 43 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~ 120 (537)
T 3fp2_A 43 EAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-S 120 (537)
T ss_dssp -CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-h
Confidence 3356666666554 4466777777788888888888888887763 235667777778888888888888888533 2
Q ss_pred CCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC------CCCc---------------------------h---hH
Q 039695 122 NLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFG------FQYN---------------------------L---VV 165 (605)
Q Consensus 122 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~~---------------------------~---~~ 165 (605)
. .|+... ..+..+...+....+...++.+.+.. ..|+ . ..
T Consensus 121 ~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 121 L--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred c--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 2 122111 11222233333455555555553320 0111 1 13
Q ss_pred HHHHHHHHHhC--------CCHHHHHHHHhhcCC--CC--------hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 039695 166 CSSLVDMYGKC--------NDVDGARRVFDLMGC--RN--------VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDR 227 (605)
Q Consensus 166 ~~~Li~~y~~~--------g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 227 (605)
...+...+... |++++|..+|+++.. |+ ..+|..+...+...|++++|+..|.+.....
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--- 273 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--- 273 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---
Confidence 33444443333 478999999998865 33 2356677788899999999999999998854
Q ss_pred CChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHH
Q 039695 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIV 304 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 304 (605)
|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+..
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 352 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 668888899999999999999999999999876 55788899999999999999999999998763 45678999999
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHhhc
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP----DAKHYTCVVDMLGRT 380 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~ 380 (605)
.|...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+.
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 33567888899999999999999999998865431111 233345556777787
Q ss_pred ----------CCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 381 ----------GRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 381 ----------g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
|++++|...+++.. ..|+ +..+|..+...+...|++++|...+++++++.|.+.....
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999998854 3443 2778999999999999999999999999999998765433
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.5e-17 Score=166.26 Aligned_cols=307 Identities=9% Similarity=-0.005 Sum_probs=237.8
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 039695 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAH 204 (605)
Q Consensus 128 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 204 (605)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++... .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777788888888888888888765 45677788888888888888888888877643 3556777888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCC---Ch-hHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 039695 205 AQNAQGHEALEMFREFNYQSRDRP---NQ-HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~~~~~~p---~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 280 (605)
.+.|++++|+..|++..... | +. ..+..+... . .......+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~-------~----------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKA-------D----------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHH-------H----------------HHHHHHHHHHHHHHccC
Confidence 88888888888888877543 4 21 111111110 0 01123345678899999
Q ss_pred HHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 281 VNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
+++|.+.|+++.+ .+...|..+...|...|++++|+..+++.... .+.+..++..+...+...|++++|...++..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998763 46678889999999999999999999999986 3446788889999999999999999999998
Q ss_pred HHhcCCCCc-HHHHH------------HHHHHHhhcCCHHHHHHHHHhCC-CCCCchh---hHHHHHHHHHHHcCChHHH
Q 039695 358 YRKYGIIPD-AKHYT------------CVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGP---LLWGTLLSASRLHGRVDIA 420 (605)
Q Consensus 358 ~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~---~~~~~ll~~~~~~g~~~~a 420 (605)
.+. .|+ ...+. .+...+.+.|++++|.+.+++.. ..|+... ..|..+..++...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 644 343 33322 33677899999999999998753 3444211 2355688899999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 421 VEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=7.3e-18 Score=166.62 Aligned_cols=286 Identities=9% Similarity=-0.010 Sum_probs=183.2
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 237 (605)
.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+..+.++.... +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 3444445555555555555555555555432 233344445555555555555555555555432 23344455555
Q ss_pred HhhcccC-chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChh
Q 039695 238 NACASLG-RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGR 313 (605)
Q Consensus 238 ~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 313 (605)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5555555 5555555555555443 33445566666667777777777777666542 33456666777777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHhhcCCHHHH
Q 039695 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG-------IIPDAKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 386 (605)
+|...|++..+.. +.+..++..+...+...|++++|...++.+..... .......+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888887777642 33456777777777888888888888877754321 123356788888888888888888
Q ss_pred HHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCh
Q 039695 387 YKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY-ALAGEW 451 (605)
Q Consensus 387 ~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 451 (605)
.+.+++.. ..|+ +...|..+...+...|++++|...++++++..|+++.++..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88887743 2332 2678888888888888888888888888888888888888888877 444543
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.1e-18 Score=169.70 Aligned_cols=286 Identities=9% Similarity=0.026 Sum_probs=126.4
Q ss_pred cCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 039695 74 RLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTH 153 (605)
Q Consensus 74 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 153 (605)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7789999999999996664 9999999999999999999999653 5888999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHH
Q 039695 154 IETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHML 233 (605)
Q Consensus 154 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 233 (605)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhH
Confidence 8774 45688899999999999999999988864 77789999999999999999999999875 368
Q ss_pred HhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChh
Q 039695 234 ASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGR 313 (605)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (605)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888889888888888777 367888888888888888888877777655 34444556888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHhhcCCHHH
Q 039695 314 FSLDLFNEMISRGIKPNDVTFVGVLHAC--SHSGLVDEGIQHLDSMYRKYGIIP------DAKHYTCVVDMLGRTGRLDE 385 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 385 (605)
+|+.+++...... +-....|+.+.-++ -+.+++.+..+.|. .+-+++| +..+|.-++-.|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 8888888876532 22233444443333 34455555555444 3335555 35677888888888888888
Q ss_pred HHHHHHhC
Q 039695 386 AYKLAKSI 393 (605)
Q Consensus 386 A~~~~~~m 393 (605)
|...+-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 87765443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.4e-17 Score=158.97 Aligned_cols=266 Identities=12% Similarity=-0.011 Sum_probs=228.7
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHH
Q 039695 192 RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASAL 271 (605)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 271 (605)
.+...+..+...+...|++++|+++|+++.... +.+...+..++.++...|++++|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 456677888889999999999999999998765 4455666677788899999999999999999875 5567888999
Q ss_pred HHHHHhcC-CHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 039695 272 VDMYAKCG-SVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347 (605)
Q Consensus 272 i~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 347 (605)
...|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+... .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 4567899999999999999999999999988632 2456677788999999999
Q ss_pred HHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC---------CCCchhhHHHHHHHHHHHcCCh
Q 039695 348 DEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQV---------DPDGGPLLWGTLLSASRLHGRV 417 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~p~~~~~~~~~ll~~~~~~g~~ 417 (605)
++|...++... ...|+ ...+..+...|.+.|++++|...+++... .++....+|..+..++...|++
T Consensus 176 ~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999886 34554 78899999999999999999999887431 0111256899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 418 DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999877654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=2.1e-15 Score=158.05 Aligned_cols=366 Identities=10% Similarity=-0.033 Sum_probs=292.1
Q ss_pred CchHHHHHHHHHHHc----CCChhHHHHHHhcCCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhh
Q 039695 60 SNTFTLNHLINCYVR----LKKTQVARQLFDEMLE-PNVVSYTSLMAGYIN----MGQPQIALLLFQKMLGNLVWPNEFT 130 (605)
Q Consensus 60 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~t 130 (605)
.++..+..|-..|.. .++++.|...|++..+ .++.++..|-..|.. .+++++|+..|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 366777777778877 7999999999987633 577888888889988 899999999999998865 5566
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhhHHHHH
Q 039695 131 FATVIKACSM----LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGK----CNDVDGARRVFDLMGC-RNVVSWTSII 201 (605)
Q Consensus 131 ~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 201 (605)
+..+-..+.. .+++++|.+.++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776 789999999999998876 56778888888887 7899999999987654 5778888888
Q ss_pred HHHHH----cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcc----cCchhhHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039695 202 VAHAQ----NAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS----LGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273 (605)
Q Consensus 202 ~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 273 (605)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .++.++|...+....+.| +...+..|..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 88888 899999999999988765 45556666666654 788999999999888765 4556677777
Q ss_pred HHHh----cCCHHHHHHHHhccCC-CCcchHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 274 MYAK----CGSVNYSDKVFNRISN-PSVVTYTSMIVGAAKY-----GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 274 ~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
+|.. .++.++|.+.|++..+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8877 8999999999998765 4566777788888877 89999999999998865 34556666666665
Q ss_pred cC---cHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH---
Q 039695 344 SG---LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR----TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL--- 413 (605)
Q Consensus 344 ~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~--- 413 (605)
.| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.....+ +..+..|...+..
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--SAAQVQLGEIYYYGLG 414 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSS
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 45 788999999988543 357788888888888 8999999999988654445 7888889999988
Q ss_pred -cCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 039695 414 -HGRVDIAVEASNQLIESNQQ---VANAYVTLSNTYAL 447 (605)
Q Consensus 414 -~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 447 (605)
.++.++|...|+++.+.+|+ ++.+...|..++..
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999998854 55566666555443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2e-17 Score=166.39 Aligned_cols=279 Identities=13% Similarity=0.015 Sum_probs=209.6
Q ss_pred hCCCHHHHHH-HHhhcCC-----C--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch
Q 039695 175 KCNDVDGARR-VFDLMGC-----R--NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246 (605)
Q Consensus 175 ~~g~~~~A~~-~~~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 246 (605)
-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3466777776 6664432 1 34557777777777888888888887777653 44566777777777777888
Q ss_pred hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-cchHHH---------------HHHHHHH
Q 039695 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PS-VVTYTS---------------MIVGAAK 308 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------li~~~~~ 308 (605)
++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ |+ ...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888887777765 44667777788888888888888888877653 21 122211 2333448
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHH
Q 039695 309 YGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 386 (605)
.|++++|+..|+++....... +..++..+...+...|++++|...++.+... .|+ ...+..+...|.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999998853221 4788899999999999999999999998643 454 78999999999999999999
Q ss_pred HHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCChhHH
Q 039695 387 YKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-----------ANAYVTLSNTYALAGEWENV 454 (605)
Q Consensus 387 ~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~a 454 (605)
.+.++++. ..|+ +..+|..+..++...|++++|...++++++..|++ ..+|..++.+|...|++++|
T Consensus 271 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99998853 3343 27799999999999999999999999999988877 67899999999999999999
Q ss_pred HHHHHH
Q 039695 455 HSLRSE 460 (605)
Q Consensus 455 ~~~~~~ 460 (605)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998763
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.5e-15 Score=159.09 Aligned_cols=397 Identities=10% Similarity=0.057 Sum_probs=284.4
Q ss_pred CCchHHHHHHHHHHHcCCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 039695 59 LSNTFTLNHLINCYVRLKKTQVARQLFDEMLE--P-NVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVI 135 (605)
Q Consensus 59 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll 135 (605)
+-+...|..++. +.+.|+++.|..+|+++.+ | +...|...+..+.+.|++++|..+|++.+... |+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 457778888888 4778999999999998844 3 56689999999999999999999999998853 6766666655
Q ss_pred HHH-hccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCCHHHHHHHHhhcCC-CCh---h
Q 039695 136 KAC-SMLADLITGKQ----IHTHIETF-GFQY-NLVVCSSLVDMYGK---------CNDVDGARRVFDLMGC-RNV---V 195 (605)
Q Consensus 136 ~a~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~y~~---------~g~~~~A~~~~~~m~~-~~~---~ 195 (605)
... ...|+.+.|.+ +|+.+++. |..| +...|...+....+ .|+++.|..+|++... |+. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 432 34566666554 77766654 5443 46678888877665 6889999999998764 321 3
Q ss_pred hHHHHHHHH-------------HHcCChhHHHHHHHHHH------HcC--CCCCCh--------hHHHhHHHhhcc----
Q 039695 196 SWTSIIVAH-------------AQNAQGHEALEMFREFN------YQS--RDRPNQ--------HMLASVINACAS---- 242 (605)
Q Consensus 196 ~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~--~~~p~~--------~t~~~ll~a~~~---- 242 (605)
.|....... .+.+++.+|..++.+.. +.. .++|+. ..|...+.-...
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 12355677777776532 111 023331 233333322211
Q ss_pred cCch----hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-CcchHH
Q 039695 243 LGRL----VSGKVAHGVVVRSGCEFNDVVASALVDMYAK-------CGSVN-------YSDKVFNRISN---P-SVVTYT 300 (605)
Q Consensus 243 ~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~ 300 (605)
.++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 1222 35667888887764 5577888888888876 69987 89999998864 3 467889
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH-
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPND--VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDM- 376 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~- 376 (605)
.++..+.+.|++++|..+|+++.+ ..|+. ..|...+..+.+.|++++|.++|+...+ ..|. ...|.....+
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHH
Confidence 999999999999999999999998 45543 4788888888889999999999998863 3443 3333333322
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHhcCCh
Q 039695 377 LGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN----AYVTLSNTYALAGEW 451 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 451 (605)
+...|+.++|..+|+.. ...|+ ++..|..++..+...|+.+.|..+|+++++..|.++. .|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999874 33343 3789999999999999999999999999998776655 777778888889999
Q ss_pred hHHHHHHHHHHhCC
Q 039695 452 ENVHSLRSEMKRTG 465 (605)
Q Consensus 452 ~~a~~~~~~m~~~~ 465 (605)
+.+.++.+++.+.-
T Consensus 480 ~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 480 ASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999887643
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.8e-14 Score=150.92 Aligned_cols=353 Identities=13% Similarity=0.002 Sum_probs=295.2
Q ss_pred CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCC
Q 039695 90 EPNVVSYTSLMAGYIN----MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM----LADLITGKQIHTHIETFGFQY 161 (605)
Q Consensus 90 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~ 161 (605)
..++.++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577888888888888 899999999999998864 56677778888877 899999999999999876
Q ss_pred chhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCChhH
Q 039695 162 NLVVCSSLVDMYGK----CNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQ----NAQGHEALEMFREFNYQSRDRPNQHM 232 (605)
Q Consensus 162 ~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t 232 (605)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 66777888999998 8999999999998755 467788888888887 789999999999998765 5666
Q ss_pred HHhHHHhhcc----cCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CCcchHHHHH
Q 039695 233 LASVINACAS----LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK----CGSVNYSDKVFNRISN-PSVVTYTSMI 303 (605)
Q Consensus 233 ~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 303 (605)
+..+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777766 789999999999998876 55677888888886 8899999999998765 5666777788
Q ss_pred HHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 039695 304 VGAAK----YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS-----GLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374 (605)
Q Consensus 304 ~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 374 (605)
..|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|+...+. + +...+..+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88887 899999999999998764 445666666677666 8999999999988542 2 456777888
Q ss_pred HHHhhcC---CHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039695 375 DMLGRTG---RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447 (605)
Q Consensus 375 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 447 (605)
.+|.+.| ++++|.+.|++.....+ +..+..|...+.. .+++++|...++++.+.+ ++.++..|+.+|.+
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGE--KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 8888766 78999999988654455 8899999999998 899999999999999875 46789999999999
Q ss_pred ----cCChhHHHHHHHHHHhCCC
Q 039695 448 ----AGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 448 ----~g~~~~a~~~~~~m~~~~~ 466 (605)
.+++++|.+.+++..+.+.
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.1e-16 Score=161.07 Aligned_cols=298 Identities=11% Similarity=-0.006 Sum_probs=171.4
Q ss_pred hcCChhHHHH-HHHHHHhCCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 039695 105 NMGQPQIALL-LFQKMLGNLV---WPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVD 180 (605)
Q Consensus 105 ~~g~~~~a~~-~~~~m~~~g~---~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 180 (605)
..|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666666 6665443211 1134456666667777777777777777777654 445667777777777777777
Q ss_pred HHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHH
Q 039695 181 GARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVV 257 (605)
Q Consensus 181 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 257 (605)
+|...|+++.. .+..+|..+...|...|++++|++.|+++.... |+........ +.....
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~------~~~~~~-------- 178 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPA------EEGAGG-------- 178 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHH------HHHhhh--------
Confidence 77777776532 456677778888888888888888888877644 3222111100 000000
Q ss_pred HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 258 RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--P---SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 258 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
..+ ......+...+ ..|++++|...|+++.+ | +..+|..+...|.+.|++++|+..|+++.... +.+..
T Consensus 179 ---~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 ---AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 000 00111112222 55556666666655542 2 34556666666666677777777776666541 22455
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc----------h
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG----------G 400 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----------~ 400 (605)
++..+...+...|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|.+.+++.. ..|+. .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 6666677777777777777777766432 333 6667777777777777777777766532 11210 1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
..+|..+..++...|+.++|..++++.++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 46788888888888888888777765543
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3.1e-18 Score=169.68 Aligned_cols=252 Identities=12% Similarity=0.089 Sum_probs=118.5
Q ss_pred HhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHH
Q 039695 174 GKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253 (605)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 253 (605)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 36788999999999996664 899999999999999999999964 367779999999999999999999988
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 039695 254 GVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333 (605)
Q Consensus 254 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 333 (605)
....+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|..+|.++ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 877774 4557889999999999999999998886 478889999999999999999999999976 36
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL 413 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~ 413 (605)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+ -...++..|.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad----~l~~lv~~Yek 219 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD----ELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh----hHHHHHHHHHH
Confidence 889999999999999999999877 2688999999999999999999877766654444 34468899999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChhHHHHHHH
Q 039695 414 HGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA--GEWENVHSLRS 459 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~~a~~~~~ 459 (605)
.|.+++|..++++.+.+++...+.|..|..+|++- ++..+..+.|.
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988865 45555555543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=3.9e-17 Score=164.27 Aligned_cols=261 Identities=12% Similarity=-0.015 Sum_probs=202.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHH
Q 039695 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272 (605)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 272 (605)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44567777788888888888888888877654 4466777777788888888888888888877765 44577788888
Q ss_pred HHHHhcCCHHHHHHHHhccCC--CC-----------cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 039695 273 DMYAKCGSVNYSDKVFNRISN--PS-----------VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK-PNDVTFVGVL 338 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll 338 (605)
..|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|+.+|+++...... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888887753 11 223445578889999999999999999885322 2578899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCC
Q 039695 339 HACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 339 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
..+...|++++|...|+.+.+. .| +...+..+..+|.+.|++++|.+.+++.. ..|+ +..+|..+..++...|+
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 9999999999999999998643 44 48899999999999999999999998853 3443 27789999999999999
Q ss_pred hHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 039695 417 VDIAVEASNQLIESNQQ------------VANAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
+++|...+++++++.|. +..+|..|..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998766 356889999999999999998887654
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3.4e-15 Score=144.58 Aligned_cols=269 Identities=10% Similarity=-0.008 Sum_probs=199.8
Q ss_pred HHhCCCHHHHHHHHhhcCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhh
Q 039695 173 YGKCNDVDGARRVFDLMGCRNV----VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 248 (605)
....|++..|+..++.....++ .....+..+|...|++++|+..++. . ..|+..++..+...+...++.+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3456777777777766554322 2334456677777777777765543 1 34566666777777777777777
Q ss_pred HHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 039695 249 GKVAHGVVVRSGC-EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327 (605)
Q Consensus 249 a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 327 (605)
|.+.++.+...+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 7777777776653 44566777788899999999999999998 567788999999999999999999999999986
Q ss_pred CCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhH
Q 039695 328 KPNDVTF---VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLL 403 (605)
Q Consensus 328 ~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 403 (605)
.|+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|.+.+++. ...|+ ++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 3554321 12334444568999999999999765 3446889999999999999999999999884 34454 3778
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 039695 404 WGTLLSASRLHGRVDI-AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL 457 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 457 (605)
|..++..+...|+.++ +.++++++++.+|+++. +.+...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 9999999999999876 67899999999999874 34555666666665543
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=3.2e-15 Score=155.77 Aligned_cols=253 Identities=9% Similarity=-0.017 Sum_probs=134.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc----ccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 039695 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACA----SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVN 282 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 282 (605)
.++.++|++.|++..... +.+...+..+...+. ..++.++|.+.+....+.. +.+..++..+...|.+.|+++
T Consensus 188 ~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchH
Confidence 455555555555554432 223333333322222 2344555555555555543 334455555666666666666
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHH-------------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039695 283 YSDKVFNRISN--P-SVVTYTSMIVGAAK-------------------YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340 (605)
Q Consensus 283 ~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 340 (605)
+|...|++..+ | +..+|..+...|.. .+..++|...|++..+.. +.+..++..+...
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 66666655542 2 22334444333321 233567888888877642 2244567778888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCcH--HHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCC
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPDA--KHYTCVVD-MLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
+...|++++|...|++.... ...|.. ..+..+.. .+...|+.++|+..+++. ...|+ ...+...
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~~~--------- 411 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKEKM--------- 411 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHHHH---------
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHH---------
Confidence 99999999999999988532 222221 12333333 234678999999998773 45566 3333222
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 039695 417 VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWV 475 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 475 (605)
...+.+++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456778888899999999999999999999999999999999988776555555664
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.6e-16 Score=159.74 Aligned_cols=260 Identities=11% Similarity=0.004 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 039695 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAH 204 (605)
Q Consensus 128 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 204 (605)
...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|++... .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3345566666666666666666666666654 44566667777777777777777777766543 3456677777777
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCh-----------hHHHhHHHhhcccCchhhHHHHHHHHHHhCCC-CcHhHHHHHH
Q 039695 205 AQNAQGHEALEMFREFNYQSRDRPNQ-----------HMLASVINACASLGRLVSGKVAHGVVVRSGCE-FNDVVASALV 272 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~~~~~~p~~-----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li 272 (605)
.+.|++++|+..|+++.... |+. ..+..+...+...|++++|...+..+.+.... .+..++..+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 77777777777777776533 221 11122344444555555555555555554311 1344444444
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 039695 273 DMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQ 352 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 352 (605)
..|.+.|++++| +..|++..+. .+.+..++..+..++...|++++|..
T Consensus 221 ~~~~~~g~~~~A-------------------------------~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 221 VLFHLSGEFNRA-------------------------------IDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHTCHHHH-------------------------------HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHH-------------------------------HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444 4444444442 11234444444455555555555555
Q ss_pred HHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----------CchhhHHHHHHHHHHHcCChHH
Q 039695 353 HLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDP-----------DGGPLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 353 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-----------~~~~~~~~~ll~~~~~~g~~~~ 419 (605)
.|+.+.+. .|+ ...+..+..+|.+.|++++|.+.+++.. ..| ..+..+|..+..++...|+.+.
T Consensus 269 ~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 269 AYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 55544321 232 4444555555555555555555544421 000 0014566666666666777666
Q ss_pred HHHHHHH
Q 039695 420 AVEASNQ 426 (605)
Q Consensus 420 a~~~~~~ 426 (605)
+..+.++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6665544
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.3e-13 Score=151.78 Aligned_cols=409 Identities=13% Similarity=0.074 Sum_probs=290.7
Q ss_pred hhhhhccchHHHHHHHHHhhhCCCC--CChhhHHHHHHHhhChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCChhH
Q 039695 3 KSLTRNLIFTLAASSLTRQNKRSSC--HTKAHFIQQLQECKHLISLASVHSEILKSGFLSNTFTLNHLINCYVRLKKTQV 80 (605)
Q Consensus 3 ~~l~~~~~~~~a~~~l~~m~~~g~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 80 (605)
+.+...|.+.+|++++++....+.. -+...-..++....+. +..++.+.+.+.+ .+...-+...+...|.+++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd----~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD----NYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh----hccHHHHHHHHHhCCCHHH
Confidence 4567789999999999998755331 1112222233222222 3344444444433 2224446677778999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039695 81 ARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQ 160 (605)
Q Consensus 81 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 160 (605)
|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+.+++...|++++|...|...
T Consensus 1068 Af~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1068 AFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 999999874 22222333433 668899999988855 14678889999999999999999998553
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHH
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN 238 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 238 (605)
.|...|..++..|.+.|++++|.+.+....+ ++....+.++.+|++.+++++ ++-|- ..|+...+..+..
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI-------~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFI-------NGPNNAHIQQVGD 1203 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHH-------hCCCHHHHHHHHH
Confidence 4677788899999999999999999976543 444445568899999988885 43332 1356667778889
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHH
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
.|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999875 47888999999999999999999877 5568899999999999998888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhh--cCCHHHHHHHHHh-CC
Q 039695 319 FNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGR--TGRLDEAYKLAKS-IQ 394 (605)
Q Consensus 319 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~--~g~~~~A~~~~~~-m~ 394 (605)
... +..+...+..++..|.+.|.+++|+.+++... ++.|. ...|+-|..+|++ -+++.++.++|.. +.
T Consensus 1273 gl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1273 GLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 654 33355667788889999999999999998664 66654 5667777777765 4567777777765 32
Q ss_pred CCC----CchhhHHHHHHHHHHHcCChHHHHHHHHHHHh------------cCCCCCchHHHHHHHHHhcC---------
Q 039695 395 VDP----DGGPLLWGTLLSASRLHGRVDIAVEASNQLIE------------SNQQVANAYVTLSNTYALAG--------- 449 (605)
Q Consensus 395 ~~p----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~y~~~g--------- 449 (605)
..| -.....|.-+.-.|.+.|+++.|....-+-.. ..+.++..|.-.+..|...+
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~ 1424 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM 1424 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHH
Confidence 222 02366899999999999999988833211111 14667778887777777666
Q ss_pred ------ChhHHHHHHH
Q 039695 450 ------EWENVHSLRS 459 (605)
Q Consensus 450 ------~~~~a~~~~~ 459 (605)
+.+.+.+++.
T Consensus 1425 ~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1425 VLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HhhhcCChHHHHHHHH
Confidence 6666666665
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=5.8e-16 Score=152.66 Aligned_cols=256 Identities=12% Similarity=-0.054 Sum_probs=173.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 039695 198 TSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK 277 (605)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 277 (605)
..+...+...|++++|+.+|+++.... +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|.+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 333344444444444444444443322 2233334444444444444444444444444432 2334445555555555
Q ss_pred cCCHHHHHHHHhccCC--C-CcchHHHH--------------HH-HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 278 CGSVNYSDKVFNRISN--P-SVVTYTSM--------------IV-GAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555555432 1 11222222 22 2677888999999999998763 336788888999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCCh
Q 039695 340 ACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRV 417 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~ 417 (605)
.+...|++++|...++.+.+. .| +...+..+...|.+.|++++|.+.+++.. ..|+ +..+|..+...+...|++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccH
Confidence 999999999999999988643 34 47889999999999999999999998853 3343 277899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 418 DIAVEASNQLIESNQQ------------VANAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 418 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
++|...++++++..|. ++.++..++.+|.+.|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 6789999999999999999999988643
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=9.5e-18 Score=178.90 Aligned_cols=130 Identities=11% Similarity=0.146 Sum_probs=117.9
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEM-------LEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFAT 133 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ 133 (605)
-..+||+||++|+++|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999776 369999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 039695 134 VIKACSMLADL-ITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190 (605)
Q Consensus 134 ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 190 (605)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.+++.+.+.+-++...+++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999985 7899999999999999999999999988887766666666655543
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=1.8e-14 Score=152.53 Aligned_cols=367 Identities=6% Similarity=-0.025 Sum_probs=266.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 039695 91 PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLV 170 (605)
Q Consensus 91 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 170 (605)
.|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|.++|+.+++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 37789999998 588999999999999999852 2255678889999999999999999999999864 6777888777
Q ss_pred H-HHHhCCCHHHHHH----HHhhcC------CCChhhHHHHHHHHHH---------cCChhHHHHHHHHHHHcCCCCCCh
Q 039695 171 D-MYGKCNDVDGARR----VFDLMG------CRNVVSWTSIIVAHAQ---------NAQGHEALEMFREFNYQSRDRPNQ 230 (605)
Q Consensus 171 ~-~y~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~p~~ 230 (605)
. .....|+.+.|.+ +|+... ..+...|...+....+ .|++++|..+|++..... ..+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHH
Confidence 5 3345677766654 666542 1456788888776655 688999999999987632 22212
Q ss_pred hHHHhHHHh---h----------cccCchhhHHHHHHHHHH------hC---CCCc--------HhHHHHHHHHHHhc--
Q 039695 231 HMLASVINA---C----------ASLGRLVSGKVAHGVVVR------SG---CEFN--------DVVASALVDMYAKC-- 278 (605)
Q Consensus 231 ~t~~~ll~a---~----------~~~~~~~~a~~~~~~~~~------~g---~~~~--------~~~~~~li~~y~~~-- 278 (605)
..|...... . ...+.+..|..++..+.. .. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 333322211 1 123456666666655321 11 2333 24555555443322
Q ss_pred --CCH----HHHHHHHhccCC---CCcchHHHHHHHHHH-------cCChh-------HHHHHHHHHHHcCCCC-CHHHH
Q 039695 279 --GSV----NYSDKVFNRISN---PSVVTYTSMIVGAAK-------YGLGR-------FSLDLFNEMISRGIKP-NDVTF 334 (605)
Q Consensus 279 --g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p-d~~t~ 334 (605)
++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHH
Confidence 232 366777877763 456788888888776 69987 899999998863 334 57788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHH-H
Q 039695 335 VGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSA-S 411 (605)
Q Consensus 335 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~-~ 411 (605)
..++..+...|++++|..+|+.+.+ +.|+ ...|..++..+.+.|++++|.++|++....|+.....|...... +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 8888899999999999999999964 4665 35899999999999999999999998543333223333332222 3
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 412 RLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 412 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
...|+.+.|..+|+++++..|+++..|..++..+.+.|+.++|..++++....+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999999999999999999988643
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=176.90 Aligned_cols=132 Identities=11% Similarity=0.118 Sum_probs=114.7
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 039695 261 CEFNDVVASALVDMYAKCGSVNYSDKVFNRIS-------NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVT 333 (605)
Q Consensus 261 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 333 (605)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456799999999999999999999997753 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 039695 334 FVGVLHACSHSGL-VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSI 393 (605)
Q Consensus 334 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (605)
|+++|.++++.|. .++|.++|++| .+.|+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM-~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH-HHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 57899999999 45599999999999998888776666655554444
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.4e-13 Score=151.73 Aligned_cols=349 Identities=10% Similarity=0.076 Sum_probs=264.7
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCC-CCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEML-EPN-----VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATV 134 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~l 134 (605)
++.--...+..|...|.+.+|++++++.. +|+ ...-|.++.+..+. +..+..++..+... ....-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 33344556777888888888888888773 222 34556666666666 55666666655532 113335
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHH
Q 039695 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214 (605)
Q Consensus 135 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 214 (605)
...|...|.+++|..+|++.. -.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 667778899999999988752 111222333 237788999999988774 4678899999999999999999
Q ss_pred HHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 039695 215 EMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP 294 (605)
Q Consensus 215 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 294 (605)
+.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++..|+|.+++++..... ..+
T Consensus 1126 dsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 999652 467788889999999999999999999887765 44444556999999999998655443 456
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 039695 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVV 374 (605)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 374 (605)
+...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHH
Confidence 7778888889999999999999999884 47889999999999999999988865 3467888888
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChh
Q 039695 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA--GEWE 452 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~ 452 (605)
.+|...|++..|......+... +..+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|++- ++..
T Consensus 1258 ~acve~~Ef~LA~~cgl~Iiv~----~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIVVH----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhhcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 8899999999999887765433 456678999999999999999999999999999988998888888764 3455
Q ss_pred HHHHHHH
Q 039695 453 NVHSLRS 459 (605)
Q Consensus 453 ~a~~~~~ 459 (605)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 5555544
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=3.8e-15 Score=144.17 Aligned_cols=249 Identities=10% Similarity=-0.004 Sum_probs=202.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCh--hHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 039695 201 IVAHAQNAQGHEALEMFREFNYQSRDRPNQ--HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC 278 (605)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 278 (605)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...+.. .-+|+......+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3445678999999999887643 33543 3556678899999999998875543 2466788889999999999
Q ss_pred CCHHHHHHHHhccC----CCC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 039695 279 GSVNYSDKVFNRIS----NPS-VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353 (605)
Q Consensus 279 g~~~~A~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 353 (605)
|+.++|.+.++++. .|+ ...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 243 45666777899999999999999987 45778888999999999999999999
Q ss_pred HHHHHHhcCCCCcHH---HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 354 LDSMYRKYGIIPDAK---HYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 354 ~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
++.+.+. .|+.. ....++..+...|++++|..+|+++. ..|+ ++..|+.+..++...|++++|+..++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999654 46532 22334455566799999999999864 2343 388999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChhH-HHHHHHHHHhCCC
Q 039695 430 SNQQVANAYVTLSNTYALAGEWEN-VHSLRSEMKRTGI 466 (605)
Q Consensus 430 ~~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~~~~ 466 (605)
.+|+++.++..++.++...|++++ +.++++++.+...
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999976 5789998877554
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=7.8e-15 Score=144.50 Aligned_cols=218 Identities=10% Similarity=0.034 Sum_probs=101.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChh
Q 039695 135 IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGH 211 (605)
Q Consensus 135 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 211 (605)
...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..+...|...|+++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence 333344444444444444444432 22334444444444455555555554444322 23445555555555666666
Q ss_pred HHHHHHHHHHHcCCCCCChhHHHhH--------------HH-hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 039695 212 EALEMFREFNYQSRDRPNQHMLASV--------------IN-ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276 (605)
Q Consensus 212 ~A~~~~~~m~~~~~~~p~~~t~~~l--------------l~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 276 (605)
+|++.|+++.... +.+...+..+ .. .+...|++++|...+..+.+.. +.+..++..+...|.
T Consensus 107 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 107 AALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 6666666555432 1111111111 11 2455566666666666666554 334455555555555
Q ss_pred hcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 039695 277 KCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353 (605)
Q Consensus 277 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 353 (605)
+.|++++|.+.|+++.+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..++...|++++|.+.
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555555555554431 223344445555555555555555555544431 11334444444444444555555544
Q ss_pred HHHH
Q 039695 354 LDSM 357 (605)
Q Consensus 354 ~~~m 357 (605)
++.+
T Consensus 263 ~~~a 266 (327)
T 3cv0_A 263 LVRA 266 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.9e-14 Score=147.55 Aligned_cols=367 Identities=11% Similarity=-0.050 Sum_probs=238.5
Q ss_pred CCchHHHHHHHHHHHcCCChhHHHHHHhcCC-----------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 039695 59 LSNTFTLNHLINCYVRLKKTQVARQLFDEML-----------EP-NVVSYTSLMAGYINMGQPQIALLLFQKMLGN---- 122 (605)
Q Consensus 59 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 122 (605)
......||.|-..|...|+.++|++.|++.. .| ..++|+.+...|...|++++|...|++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3446689999999999999999999998641 22 4578999999999999999999999887542
Q ss_pred -C-CCC-ChhhHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhCCCHHHHHHHHhhcCC---
Q 039695 123 -L-VWP-NEFTFATVIKACSM--LADLITGKQIHTHIETFGFQYNLVVCSSLVDMY---GKCNDVDGARRVFDLMGC--- 191 (605)
Q Consensus 123 -g-~~p-d~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y---~~~g~~~~A~~~~~~m~~--- 191 (605)
+ ..+ ...++.....++.. .+++++|...|+.+++.. +.++..+..+..++ ...++.++|.+.|++..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112 23455554444443 457899999999999875 34555666655553 456777778887776532
Q ss_pred CChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhH
Q 039695 192 RNVVSWTSIIVAHAQ----NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVV 267 (605)
Q Consensus 192 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 267 (605)
.+...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+.. +.+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 455566666555544 467889999999988764 5567778888999999999999999999998875 446667
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 039695 268 ASALVDMYAKC-------------------GSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISR 325 (605)
Q Consensus 268 ~~~li~~y~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 325 (605)
+..+...|... +..+.|...|+... ..+..+|..+...|...|++++|+..|++..+.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 77776666432 23566777776654 356678999999999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchh
Q 039695 326 GIKPNDV--TFVGVLH-ACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGP 401 (605)
Q Consensus 326 g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~ 401 (605)
...|... .+..+.. .....|+.++|+..|.+.. .+.|+........ +.+.++++. +...|+ ++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~-~~ 430 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQKIAKMRLSKNGA-DS 430 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHHHHHHHHHHCC--CT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHHHHHHHHHhCCC-CH
Confidence 4444322 2222222 2356799999999999876 4566643322222 223333333 222343 27
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
.+|..|...+...|++++|++.|+++++++|.+|.++..++
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 79999999999999999999999999999998887665543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8.9e-14 Score=131.77 Aligned_cols=220 Identities=10% Similarity=0.044 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 039695 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274 (605)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 274 (605)
..|..+...+...|++++|+..|.+..... .+...+ ..+...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~-----------------------------------~~~~~~ 47 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYL-----------------------------------NNRAAA 47 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHH-----------------------------------HHHHHH
Confidence 345555556666666666666666555432 334444 444444
Q ss_pred HHhcCCHHHHHHHHhccCC--C----C----cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 039695 275 YAKCGSVNYSDKVFNRISN--P----S----VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344 (605)
Q Consensus 275 y~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 344 (605)
|...|++++|.+.|++..+ | + ..+|..+...|...|++++|+..|++.... .|+.. .+...
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~ 118 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKL 118 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHH
Confidence 5555555555555544432 1 1 356677777788888888888888888773 34432 34556
Q ss_pred CcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHH
Q 039695 345 GLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 345 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
|++++|...++.+.. ..|+ ...+..+...+...|++++|.+.+++.. ..|+ +..+|..+..++...|++++|..
T Consensus 119 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 119 RNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 788899999888753 4554 7788888999999999999999998753 2333 27789999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 423 ASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++++++..|+++.+|..++.+|.+.|++++|.+.+++..+..
T Consensus 195 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999887643
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=2.8e-14 Score=131.82 Aligned_cols=195 Identities=15% Similarity=0.098 Sum_probs=153.5
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVL 338 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 338 (605)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888888999999999999988764 355678888889999999999999999988852 22566788888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHH
Q 039695 339 HACSHS-----------GLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWG 405 (605)
Q Consensus 339 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~ 405 (605)
.++... |++++|...++...+ +.|+ ...+..+..+|...|++++|+..|++.. ...+ +..|.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT--PEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc--hHHHH
Confidence 888888 999999999998864 4665 7888999999999999999999998853 2244 88999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 406 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
.+..++...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.7e-13 Score=129.87 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=171.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCChhHHHhHHH
Q 039695 162 NLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSR-DRPNQHMLASVIN 238 (605)
Q Consensus 162 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~t~~~ll~ 238 (605)
....+..+...|...|++++|...|++... .+...|..+...|...|++++|++.|.+.....+ ..|+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 356788899999999999999999987633 6788899999999999999999999999876430 011110
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHHHHHHcCChhHHH
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVVTYTSMIVGAAKYGLGRFSL 316 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 316 (605)
....++..+...|.+.|++++|...|++..+ |+ ...+...|++++|.
T Consensus 77 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 77 ------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKEL 125 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHH
Confidence 0123444455555555555555555555442 22 23455567778888
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 039695 317 DLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ- 394 (605)
Q Consensus 317 ~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 394 (605)
..++++... .| +...+..+...+...|++++|...++.+.... +.+...+..+...|.+.|++++|.+.+++..
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888887764 33 34567777778888888888888888886432 2247788888888999999999999888743
Q ss_pred CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHH
Q 039695 395 VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN------QQVANAYVTLS 442 (605)
Q Consensus 395 ~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 442 (605)
..|+ +...|..+..++...|++++|...++++++.. |.+...+..+.
T Consensus 202 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 202 KDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 2333 27788899999999999999999999999888 77665555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=2.6e-13 Score=129.98 Aligned_cols=243 Identities=10% Similarity=-0.071 Sum_probs=169.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--ChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039695 207 NAQGHEALEMFREFNYQSRDRP--NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYS 284 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 284 (605)
.|++++|+..|+++.......+ +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666655421111 34455555666666666666666666666654 34566777777788888888888
Q ss_pred HHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 039695 285 DKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY 361 (605)
Q Consensus 285 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 361 (605)
.+.|++..+ .+...|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888877653 35678888888899999999999999998874 4554444445555567789999999998775542
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC---chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD---GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 362 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
+++...+ .++..+...++.++|.+.+++.. ..|. .+..+|..+...+...|++++|...++++++.+|++...
T Consensus 175 --~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 --DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 3333333 36777778888899999988754 2221 114688899999999999999999999999999977544
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLR 458 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~ 458 (605)
...++...|++++|.+.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 366788888998887765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.5e-12 Score=121.91 Aligned_cols=241 Identities=9% Similarity=-0.068 Sum_probs=125.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCh--hHHHhHHHhhcc
Q 039695 168 SLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQ--HMLASVINACAS 242 (605)
Q Consensus 168 ~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~a~~~ 242 (605)
.....|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+ ..|+. ..+..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHH
Confidence 344455555555555555555422 233355555556666666666666666655422 11111 124444445555
Q ss_pred cCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHH
Q 039695 243 LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLF 319 (605)
Q Consensus 243 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 319 (605)
.|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443 23344555666666666666666666666553 12233333331222233555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCC--
Q 039695 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGR---LDEAYKLAKSIQ-- 394 (605)
Q Consensus 320 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~-- 394 (605)
++..+. .|+ +...+..+...+...|+ +++|...+++..
T Consensus 166 ~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 166 VKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 555442 122 13333334444444443 333443333321
Q ss_pred --CCCCc----hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039695 395 --VDPDG----GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL 447 (605)
Q Consensus 395 --~~p~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 447 (605)
..|+. ...+|..+...+...|+++.|...++++++++|+++.++..+......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 11220 125788888999999999999999999999999998776666554443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1e-12 Score=124.13 Aligned_cols=199 Identities=9% Similarity=-0.016 Sum_probs=156.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45666777777788888888887777652 355677778888888888888888888887753 23567777888888
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHH
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~ 419 (605)
...|++++|.++++.+.. .+..|+ ...+..+...|.+.|++++|.+.+++.. ..|+ +...|..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888899999988888854 234554 6778888888888999999998888743 2332 26788888888999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
|...++++++..|.+...+..++.+|...|++++|.+.++++.+...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999998888888888889999999999999999988877543
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=2.1e-12 Score=119.36 Aligned_cols=200 Identities=9% Similarity=-0.030 Sum_probs=162.3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039695 263 FNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLH 339 (605)
Q Consensus 263 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 339 (605)
.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...|++..... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3556777788888888888888888887653 446678888888889999999999999888752 335677888888
Q ss_pred HHhcc-CcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCC
Q 039695 340 ACSHS-GLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGR 416 (605)
Q Consensus 340 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~ 416 (605)
.+... |++++|...++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++. ..|+ +...|..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 88899 999999999998865 334454 6778888899999999999999988753 2333 26788889999999999
Q ss_pred hHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 417 VDIAVEASNQLIESNQ-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 417 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+++|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 888888888889999999999999998887654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.2e-12 Score=131.00 Aligned_cols=245 Identities=12% Similarity=0.092 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCc-hhhHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039695 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGR-LVSGKVAHGVVVRSGCEFNDVVASALVD 273 (605)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 273 (605)
..|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456666677777777777777777776643 3345566666667777775 777777777777765 446777777888
Q ss_pred HHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHH
Q 039695 274 MYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH-SGLVDE 349 (605)
Q Consensus 274 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~ 349 (605)
+|.+.|++++|...|+++.+ .+...|..+...+.+.|++++|+..|+++++.... +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888887763 45678888888888899999999999998885322 56778888888877 565566
Q ss_pred H-----HHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcC------
Q 039695 350 G-----IQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTG--RLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHG------ 415 (605)
Q Consensus 350 a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g------ 415 (605)
| ...++..+. +.|+ ...|..+..+|.+.| ++++|++.+.++...|+ +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 6 477777753 4665 778888888888888 68999999888754444 3678888888888864
Q ss_pred ---ChHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 039695 416 ---RVDIAVEASNQL-IESNQQVANAYVTLSNTYAL 447 (605)
Q Consensus 416 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 447 (605)
..++|+++++++ ++.+|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888877766554
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.1e-12 Score=135.41 Aligned_cols=371 Identities=7% Similarity=-0.056 Sum_probs=176.5
Q ss_pred HHHHcCCChhHHHHHHhcCCC-CChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC---
Q 039695 70 NCYVRLKKTQVARQLFDEMLE-PNVVSYTSLMAGYINMGQP---QIALLLFQKMLGNLVWPNEFTFATVIKACSMLA--- 142 (605)
Q Consensus 70 ~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~--- 142 (605)
..+.+.|++++|.++|++..+ .++.++..|-..|...|++ ++|+..|++..+. +...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 334455566666666655422 2333444444444445555 5666666555432 2233333333222222
Q ss_pred --ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH---HHHHhhcCC-CChhhHHHHHHHHHHcCChhHHHHH
Q 039695 143 --DLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA---RRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEM 216 (605)
Q Consensus 143 --~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A---~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~ 216 (605)
+.++|...++...+.|. ...+..|..+|...+..+.+ .+.+..... .+...+..+...|...+.++++...
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 45556666666555442 12444455555544432222 222222211 2344555555555555544433333
Q ss_pred HHHHHHcCCCCCChhHHHhHHHhhcccC---chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc----CCHHHHHHHHh
Q 039695 217 FREFNYQSRDRPNQHMLASVINACASLG---RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC----GSVNYSDKVFN 289 (605)
Q Consensus 217 ~~~m~~~~~~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~ 289 (605)
.......- ...+...+..+...+...| +.++|...+....+.| +++...+..|..+|... ++.++|.+.|+
T Consensus 164 a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 164 VERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 22221111 1122224444444454555 5555555555555555 33444444455555443 56677777776
Q ss_pred ccCCCCcchHHHHHHH-H--HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHhc
Q 039695 290 RISNPSVVTYTSMIVG-A--AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG-----LVDEGIQHLDSMYRKY 361 (605)
Q Consensus 290 ~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~ 361 (605)
+....+...+..+... | ...++.++|+..|++..+.| +...+..|...|. .| ++++|...|+...
T Consensus 242 ~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 242 KIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp HHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 6663344555555555 3 34677777888887777665 4445555555554 34 7777877777552
Q ss_pred CCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC
Q 039695 362 GIIPDAKHYTCVVDMLGR----TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 362 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 433 (605)
.-+...+..|..+|.. ..++++|.++|++.....+ +.....|...|.. ..+.++|...++++.+.++.
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 3345666666666655 3377788888777543333 5566666666653 44777788888777776654
Q ss_pred CCchHHHHHHHH--HhcCChhHHHHHHHHHH
Q 039695 434 VANAYVTLSNTY--ALAGEWENVHSLRSEMK 462 (605)
Q Consensus 434 ~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~ 462 (605)
.. ...+..+. ...++.++|.++.++-.
T Consensus 391 ~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 391 EA--NDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HH--HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 32 22232222 22234555555555443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=6.6e-13 Score=127.15 Aligned_cols=239 Identities=12% Similarity=-0.023 Sum_probs=139.0
Q ss_pred cCChhHHHHHHHHHHhCCCC--C-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 039695 106 MGQPQIALLLFQKMLGNLVW--P-NEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182 (605)
Q Consensus 106 ~g~~~~a~~~~~~m~~~g~~--p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 182 (605)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35556666666666554211 1 23345555555666666666666666666553 33455666666666666666666
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh
Q 039695 183 RRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS 259 (605)
Q Consensus 183 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 259 (605)
.+.|++... .+...|..+...|.+.|++++|+..|+++.... |+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 666665532 345566666666666666666666666666532 43333333444445556667777766665554
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 039695 260 GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS-------VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDV 332 (605)
Q Consensus 260 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 332 (605)
. +++...+ .++..+...++.++|...+....+.+ ...|..+...|.+.|++++|...|++.... .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 3 2233333 35666666677777777777766422 356777778888888888888888888764 3422
Q ss_pred HHHHHHHHHhccCcHHHHHHHH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHL 354 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~ 354 (605)
+.....++...|++++|.+.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 112233555667777776655
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=4.7e-12 Score=119.54 Aligned_cols=204 Identities=8% Similarity=-0.053 Sum_probs=141.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039695 194 VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVD 273 (605)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 273 (605)
...|..+...+...|++++|++.|+++.... +.+.. ++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~-----------------------------------~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSAD-----------------------------------AHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHH-----------------------------------HHHHHHH
Confidence 4556666667777777777777777666543 22333 4444445
Q ss_pred HHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHH
Q 039695 274 MYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDE 349 (605)
Q Consensus 274 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~ 349 (605)
.|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|.++|+++...+..| +...+..+..++...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554431 244556666667777777777777777776633344 44567777778888888888
Q ss_pred HHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 039695 350 GIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427 (605)
Q Consensus 350 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 427 (605)
|...++.+.+. .| +...+..+...|.+.|++++|.+.++++. ..|+ +...|..+...+...|+.+.|.+.++++
T Consensus 160 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 160 AKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888887543 34 47778888889999999999999988753 3333 2677888889999999999999999999
Q ss_pred HhcCCCCCchH
Q 039695 428 IESNQQVANAY 438 (605)
Q Consensus 428 ~~~~p~~~~~~ 438 (605)
++..|+++...
T Consensus 236 ~~~~p~~~~~~ 246 (252)
T 2ho1_A 236 KRLYPGSLEYQ 246 (252)
T ss_dssp HHHCTTSHHHH
T ss_pred HHHCCCCHHHH
Confidence 99999876543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2.2e-11 Score=116.66 Aligned_cols=224 Identities=6% Similarity=-0.076 Sum_probs=149.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHH
Q 039695 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272 (605)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 272 (605)
+..++..+...|...|++++|++.|++..+.+ + ...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~-----------------------------------~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----E-----------------------------------NSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----C-----------------------------------HHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----C-----------------------------------HHHHHHHH
Confidence 44455556666666666666666666655432 2 23333444
Q ss_pred HHHHh----cCCHHHHHHHHhccCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 039695 273 DMYAK----CGSVNYSDKVFNRISN-PSVVTYTSMIVGAAK----YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH 343 (605)
Q Consensus 273 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 343 (605)
..|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 44444 5555555555554432 244455556666666 677777777777776654 55666666667776
Q ss_pred ----cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH--
Q 039695 344 ----SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR----TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL-- 413 (605)
Q Consensus 344 ----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~-- 413 (605)
.+++++|...|+...+. + +...+..+...|.. .+++++|.+.+++.....+ +..+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYHHGE 196 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCC
Confidence 77888888888777432 2 45566667777776 7888888888877543334 6777778888888
Q ss_pred --cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 039695 414 --HGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL----AGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 414 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 466 (605)
.+++++|...++++++.+| +.++..|+.+|.+ .+++++|.+.+++..+.|.
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888888888888766 5677888888888 8888888888888877664
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=8.6e-13 Score=123.75 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 376 (605)
..|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 334444444444444555555554444431 1233344444444455555555555555443221 1124444444455
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 377 LGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
+.+.|++++|.+.+++.. ..|+ +..+|..+..++...|++++|...++++++..|+++.++..
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 555555555555544422 1111 13445555555555555555555555555555554444333
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=5.1e-12 Score=130.39 Aligned_cols=343 Identities=9% Similarity=-0.026 Sum_probs=177.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039695 99 LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADL---ITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175 (605)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 175 (605)
+...+.+.|++++|+++|++..+.| +...+..+-..+...|+. ++|.+.++...+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566777777777777776654 233333444444555655 6777777766643 44455555554444
Q ss_pred CC-----CHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch
Q 039695 176 CN-----DVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGH---EALEMFREFNYQSRDRPNQHMLASVINACASLGRL 246 (605)
Q Consensus 176 ~g-----~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 246 (605)
.| +.++|...|++... .+...+..|...|...+..+ ++.+.+......| +......+...+...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCc
Confidence 44 56677777766543 23446666666666655433 3344444444333 233344444445555544
Q ss_pred hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHhccCC---CCcchHHHHHHHHHHc----CChhHHH
Q 039695 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG---SVNYSDKVFNRISN---PSVVTYTSMIVGAAKY----GLGRFSL 316 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 316 (605)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444433333333222233336666777777777 66777777766543 2222234555555433 5677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcC-----CHHHHHH
Q 039695 317 DLFNEMISRGIKPNDVTFVGVLHA-C--SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG-----RLDEAYK 388 (605)
Q Consensus 317 ~l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 388 (605)
..|++.. .| +...+..+... + ...+++++|.+.|+... +.| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 7777665 22 23333334333 2 34667777777777663 223 4555556666665 44 7777777
Q ss_pred HHHhCCCCCCchhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChhHHHHHHHH
Q 039695 389 LAKSIQVDPDGGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL----AGEWENVHSLRSE 460 (605)
Q Consensus 389 ~~~~m~~~p~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~ 460 (605)
.|++.. ..+ +..+..|...|.. ..+.++|...|+++.+.+ ++.+...|+.+|.. ..+.++|...+++
T Consensus 309 ~~~~Aa-~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV-GRE--VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT-TTC--HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh-CCC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 777665 333 5666666655554 236777777777766543 34566677777764 3466777777777
Q ss_pred HHhCCC
Q 039695 461 MKRTGI 466 (605)
Q Consensus 461 m~~~~~ 466 (605)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 666664
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=2.5e-12 Score=118.64 Aligned_cols=191 Identities=12% Similarity=-0.025 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 237 (605)
++...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++.....
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART------------- 69 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 4444555555555555565555555555432 234455555555555555555555555554432
Q ss_pred HhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-----------CCHHHHHHHHhccCC--C-CcchHHHHH
Q 039695 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC-----------GSVNYSDKVFNRISN--P-SVVTYTSMI 303 (605)
Q Consensus 238 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li 303 (605)
+.+...+..+...|.+. |++++|...|++..+ | +...|..+.
T Consensus 70 ------------------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg 125 (217)
T 2pl2_A 70 ------------------------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125 (217)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 22333333444444444 555666655555442 2 334555566
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCC
Q 039695 304 VGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGR 382 (605)
Q Consensus 304 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 382 (605)
..|.+.|++++|+..|++..+.. .+...+..+..++...|++++|...|+...+ +.|+ ...+..+..++.+.|+
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccC
Confidence 66666666666666666666654 4556666666666666666666666666643 2343 5556666666666666
Q ss_pred HHHHHHHHHhC
Q 039695 383 LDEAYKLAKSI 393 (605)
Q Consensus 383 ~~~A~~~~~~m 393 (605)
+++|.+.+++.
T Consensus 201 ~~~A~~~~~~~ 211 (217)
T 2pl2_A 201 AEEAARAAALE 211 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=9.5e-13 Score=123.47 Aligned_cols=199 Identities=10% Similarity=0.098 Sum_probs=153.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039695 264 NDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340 (605)
Q Consensus 264 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 340 (605)
....+..+...+.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445666777778888888888888887753 356778888889999999999999999998753 3367788889999
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~ 419 (605)
+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|.+.++++. ..|+ +...|..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986542 3357888999999999999999999998853 2332 27789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 420 AVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
|...++++++..|.++.++..++.+|...|++++|.+.++++.+...
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999987543
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=2.6e-11 Score=116.14 Aligned_cols=227 Identities=9% Similarity=-0.116 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-CChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCChhHHHh
Q 039695 161 YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQ----NAQGHEALEMFREFNYQSRDRPNQHMLAS 235 (605)
Q Consensus 161 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 235 (605)
.+...+..+...|...|++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence 3567788899999999999999999998765 456778888888888 899999999998877654 3444444
Q ss_pred HHHhhcc----cCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHH---
Q 039695 236 VINACAS----LGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAK--- 308 (605)
Q Consensus 236 ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--- 308 (605)
+...+.. .+++++|...+....+.+ +..++..+...|..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCC
Confidence 4444444 455555555554444432 33455555556666
Q ss_pred -cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh----
Q 039695 309 -YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSH----SGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR---- 379 (605)
Q Consensus 309 -~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---- 379 (605)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 677777777777777754 44556666666666 78888888888887533 245677778888888
Q ss_pred cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCC
Q 039695 380 TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 434 (605)
.+++++|.+.+++.....+ ...+..+...+.. .++.++|...++++++.+|++
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8999999999887543334 6788888888888 899999999999999998865
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.9e-12 Score=130.66 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Ch----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHH
Q 039695 165 VCSSLVDMYGKCNDVDGARRVFDLMGC--R-NV----VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVI 237 (605)
Q Consensus 165 ~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 237 (605)
.+..+...+...|++++|...|++... | +. ..|..+...|...|++++|+..|++.........+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 344455566666777777666665532 2 21 34556666666666666666666665432100000
Q ss_pred HhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCcchHHHHHHHHHH
Q 039695 238 NACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---------PSVVTYTSMIVGAAK 308 (605)
Q Consensus 238 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~ 308 (605)
.+....++..+...|...|++++|...|++..+ ....+|..+...|..
T Consensus 122 -----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 122 -----------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 011223444445555555555555555544331 112345555566666
Q ss_pred cCC-----------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 039695 309 YGL-----------------GRFSLDLFNEMISR----GIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD 366 (605)
Q Consensus 309 ~g~-----------------~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 366 (605)
.|+ +++|+..+++..+. +..| ...++..+...+...|++++|...+++..+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666655431 1112 2246667777788888888888888877543211112
Q ss_pred ----HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 039695 367 ----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ----VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-- 434 (605)
Q Consensus 367 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 434 (605)
...+..+...|...|++++|.+.+++.. ...+ ....+|..+...+...|++++|...++++++..+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 3467788888899999999988887642 1111 114578888999999999999999999998764332
Q ss_pred ----CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 435 ----ANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 435 ----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
..++..++.+|.+.|++++|.+.+++..+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 347889999999999999999999988764
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=6e-12 Score=127.84 Aligned_cols=269 Identities=12% Similarity=0.036 Sum_probs=166.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHh
Q 039695 163 LVVCSSLVDMYGKCNDVDGARRVFDLMGC--R-N----VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLAS 235 (605)
Q Consensus 163 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 235 (605)
...+..+...+.+.|++++|...|++... | + ...|..+...|...|++++|+..|++.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------
Confidence 33444555556666666666666655432 1 1 2345555555556666666666555543211
Q ss_pred HHHhhcccCchhhHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----cchHHHHHHH
Q 039695 236 VINACASLGRLVSGKVAHGVVVRSGCE-FNDVVASALVDMYAKCGSVNYSDKVFNRISN-----PS----VVTYTSMIVG 305 (605)
Q Consensus 236 ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 305 (605)
.+.+.+ ....++..+...|...|++++|...|++..+ ++ ..++..+...
T Consensus 78 ---------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 78 ---------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 000101 1133444555555566666666655554432 11 2355566666
Q ss_pred HHHcCC--------------------hhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 039695 306 AAKYGL--------------------GRFSLDLFNEMISR----GIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 306 ~~~~g~--------------------~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 360 (605)
|...|+ +++|+..+.+.... +..|. ..++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666676 77777777665431 11121 345667777788888888888888877543
Q ss_pred cCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 361 YGIIPD----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ----VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 361 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
..-.++ ...+..+...|...|++++|...+++.. ..++ ....++..+...+...|++++|...++++++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 221222 3477788888889999999988887642 1111 11347788888899999999999999998876
Q ss_pred CCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 431 NQQV------ANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 431 ~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4333 44778899999999999999999988765
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=5.1e-12 Score=128.31 Aligned_cols=156 Identities=12% Similarity=-0.021 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRG-IKPN----DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AK 368 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 368 (605)
+|..+...|...|++++|...|++..+.. -.++ ..++..+...+...|++++|...++.......-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 34445555555556666665555554310 0111 235666666777777777777777766432211111 55
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CC--CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCc
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ----VD--PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ------QVAN 436 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~--p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 436 (605)
++..+...|.+.|++++|.+.+++.. .. +.....++..+...+...|++++|...+++++++.+ ....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 67777888888888888888877642 11 111244788888999999999999999999887632 2244
Q ss_pred hHHHHHHHHHhcCChhH
Q 039695 437 AYVTLSNTYALAGEWEN 453 (605)
Q Consensus 437 ~~~~l~~~y~~~g~~~~ 453 (605)
++..++.+|...|+...
T Consensus 349 ~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhHhHH
Confidence 67788888888877643
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=1.4e-11 Score=113.84 Aligned_cols=209 Identities=11% Similarity=-0.021 Sum_probs=142.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHH
Q 039695 193 NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALV 272 (605)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 272 (605)
+...|..+...+...|++++|++.|+++.... +.+.. ++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~-----------------------------------~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNEL-----------------------------------AWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH-----------------------------------HHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchH-----------------------------------HHHHHH
Confidence 34556666667777777777777777666543 22333 444444
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcH
Q 039695 273 DMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKY-GLGRFSLDLFNEMISRGIKPN-DVTFVGVLHACSHSGLV 347 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 347 (605)
..|...|++++|.+.|+++.+ .+..+|..+...|... |++++|...|+++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 555555555555555554431 3445666667777777 777888888877776333333 46677777888888888
Q ss_pred HHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHH
Q 039695 348 DEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASN 425 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 425 (605)
++|...++.+.+. .|+ ...+..+...+.+.|++++|.+.+++.. ..|..+...|..+...+...|+.+.+...++
T Consensus 130 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 130 GLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888887543 343 7778888888999999999999888743 2331126677788888899999999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 039695 426 QLIESNQQVANAYVTL 441 (605)
Q Consensus 426 ~~~~~~p~~~~~~~~l 441 (605)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9999999887654433
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=6.8e-11 Score=112.88 Aligned_cols=194 Identities=9% Similarity=-0.088 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhcCC--C-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHH
Q 039695 63 FTLNHLINCYVRLKKTQVARQLFDEML--E-PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNE--FTFATVIKA 137 (605)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~--~t~~~ll~a 137 (605)
.........|.+.|++++|...|++.. . .+...|..+...|...|++++|+..|++..+.+..|+. .+|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556677889999999999999873 2 35668999999999999999999999999884422222 237888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChhHHH
Q 039695 138 CSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGHEAL 214 (605)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 214 (605)
+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++... .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 45678899999999999999999999998865 35566777773444456999999
Q ss_pred HHHHHHHHcCCCCCChhHHHhHHHhhcccCc---hhhHHHHHHHHHHh
Q 039695 215 EMFREFNYQSRDRPNQHMLASVINACASLGR---LVSGKVAHGVVVRS 259 (605)
Q Consensus 215 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~ 259 (605)
+.|++..+.. +.+...+..+..++...++ .++|...+..+.+.
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 9999988754 3345666666666666666 66777777666653
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=5.7e-12 Score=124.06 Aligned_cols=200 Identities=13% Similarity=0.074 Sum_probs=138.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----cchHHHHHHHHHHcCC--------------------hhHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN-----PS----VVTYTSMIVGAAKYGL--------------------GRFS 315 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 315 (605)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34555566666666666666666665432 11 2256666667777777 7777
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHhhcCCHHHH
Q 039695 316 LDLFNEMISR----GIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKHYTCVVDMLGRTGRLDEA 386 (605)
Q Consensus 316 ~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 386 (605)
...+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777665431 1112 1346667777888889999999888877543211111 44778888899999999999
Q ss_pred HHHHHhCC----CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHH
Q 039695 387 YKLAKSIQ----VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV------ANAYVTLSNTYALAGEWENV 454 (605)
Q Consensus 387 ~~~~~~m~----~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a 454 (605)
.+.+++.. ..++ ....++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99887642 1111 114477888899999999999999999998765432 33788899999999999999
Q ss_pred HHHHHHHHhC
Q 039695 455 HSLRSEMKRT 464 (605)
Q Consensus 455 ~~~~~~m~~~ 464 (605)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1.2e-11 Score=110.69 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=135.5
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHH
Q 039695 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCV 373 (605)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 373 (605)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45567778888888888888888888887742 225667788888888889999999888887533 343 6677778
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 039695 374 VDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 452 (605)
...+...+++++|.+.+.+.. ..|+ +...|..+...+...|++++|++.++++++.+|.++.+|..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888888999999999887743 2333 27788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 039695 453 NVHSLRSEMKRTG 465 (605)
Q Consensus 453 ~a~~~~~~m~~~~ 465 (605)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887754
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=5.3e-12 Score=126.39 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=192.2
Q ss_pred hHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CCcchHHHHHHHH
Q 039695 231 HMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS-VNYSDKVFNRISN---PSVVTYTSMIVGA 306 (605)
Q Consensus 231 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 306 (605)
..+..+..++...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|...|+++.+ .+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666777888999999999999999876 5678899999999999997 9999999999874 4667899999999
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhh-cCCHH
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGR-TGRLD 384 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~g~~~ 384 (605)
...|++++|+..|+++++... -+...|..+..++...|++++|+..++.+++ +.|+ ...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998532 2677888999999999999999999999974 4565 8889999999999 67657
Q ss_pred HH-----HHHHHhC-CCCCCchhhHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-------
Q 039695 385 EA-----YKLAKSI-QVDPDGGPLLWGTLLSASRLHG--RVDIAVEASNQLIESNQQVANAYVTLSNTYALAG------- 449 (605)
Q Consensus 385 ~A-----~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 449 (605)
+| ++.+++. ...|+ +...|..+...+...| ++++|++.+.++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 4666653 34554 3779999999999888 689999999998 889999999999999999975
Q ss_pred --ChhHHHHHHHHH-HhCC
Q 039695 450 --EWENVHSLRSEM-KRTG 465 (605)
Q Consensus 450 --~~~~a~~~~~~m-~~~~ 465 (605)
..++|.++++++ .+.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.2e-12 Score=133.98 Aligned_cols=209 Identities=8% Similarity=-0.015 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 247 VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSV-NYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEM 322 (605)
Q Consensus 247 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 322 (605)
+.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444333222 34566667777777777777 777777776642 34567888888889999999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhc--------CCHH
Q 039695 323 ISRGIKPNDVTFVGVLHACSHS---------GLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRT--------GRLD 384 (605)
Q Consensus 323 ~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~ 384 (605)
.+. .|+...+..+..++... |++++|.+.|++..+ +.|+ ...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 874 57778888888899998 999999999998864 3554 88889999999988 9999
Q ss_pred HHHHHHHhCC-CCCC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 039695 385 EAYKLAKSIQ-VDPD--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 385 ~A~~~~~~m~-~~p~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 461 (605)
+|++.|++.. ..|. .++..|..+..++...|++++|...++++++++|+++.++..+..++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998854 3451 238899999999999999999999999999999999999999999999999999998765443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.2e-10 Score=113.67 Aligned_cols=220 Identities=9% Similarity=0.048 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHcCCCCCChhHHHhHHHhhc-------ccCch-------hhHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 039695 211 HEALEMFREFNYQSRDRPNQHMLASVINACA-------SLGRL-------VSGKVAHGVVVRSGCEFNDVVASALVDMYA 276 (605)
Q Consensus 211 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 276 (605)
++|+..|++..... +-+...|......+. ..|++ ++|..+++..++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45556666655432 233444444444333 23554 666666666665322345556777777777
Q ss_pred hcCCHHHHHHHHhccCC--CC-cc-hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 039695 277 KCGSVNYSDKVFNRISN--PS-VV-TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC-SHSGLVDEGI 351 (605)
Q Consensus 277 ~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~ 351 (605)
+.|++++|.++|++..+ |+ .. .|..+...+.+.|+.++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777653 32 22 67777777777777888888887777642 22333443333222 2357788888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCchhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 039695 352 QHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV----DPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427 (605)
Q Consensus 352 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 427 (605)
.+|+...+.. +-+...|..++..+.+.|++++|..+|++... .|+.....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887776442 12366777777777777888888887776432 33223557777777777788888888888888
Q ss_pred HhcCCCCC
Q 039695 428 IESNQQVA 435 (605)
Q Consensus 428 ~~~~p~~~ 435 (605)
++..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 87777654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=4.1e-11 Score=117.85 Aligned_cols=135 Identities=13% Similarity=0.021 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISR----GIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKH 369 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 369 (605)
+..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...++.......-.++ ...
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 333444444444455555444444321 1000 1224555556666666666666666655432111111 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
+..+...|...|++++|...+++.. ..+.....++..+...+...|++++|...+++++++.+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6667777777788777777776532 111111346777888888899999999999888887654
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1.8e-11 Score=124.73 Aligned_cols=276 Identities=12% Similarity=-0.005 Sum_probs=184.1
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhCCCHHHHHHHHhhcCC---------CChh
Q 039695 129 FTFATVIKACSMLADLITGKQIHTHIETFGFQYNL----VVCSSLVDMYGKCNDVDGARRVFDLMGC---------RNVV 195 (605)
Q Consensus 129 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~Li~~y~~~g~~~~A~~~~~~m~~---------~~~~ 195 (605)
..+..+...+...|++++|...++.+++.+. .+. .++..+...|...|++++|...|++... ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3455566678899999999999999999752 233 4788899999999999999999887632 2345
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC-ChhHHHhHHHhhcccCc----------hhhHHHHHHHHHHhCC
Q 039695 196 SWTSIIVAHAQNAQGHEALEMFREFNYQSR---DRP-NQHMLASVINACASLGR----------LVSGKVAHGVVVRSGC 261 (605)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p-~~~t~~~ll~a~~~~~~----------~~~a~~~~~~~~~~g~ 261 (605)
+|..+...|...|++++|+..|.+...... ..| ...++..+...+...|+ .+.+...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 677888889999999999999888764310 001 12233333444444444 0000000
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISN---------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPN- 330 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd- 330 (605)
+++|.+.|++..+ ....+|..+...|...|++++|+..|++..+... .++
T Consensus 199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 4444444433321 1123566666777777777777777777654210 011
Q ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC
Q 039695 331 ---DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP----DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ------VDP 397 (605)
Q Consensus 331 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p 397 (605)
..++..+...+...|++++|...+++......-.. ....+..+...|.+.|++++|.+.+++.. ..+
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 23677777888888999999888887754321111 15677888889999999999999887643 011
Q ss_pred CchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 398 DGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 398 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
.....++..+...+...|++++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 112347888999999999999999999999987653
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=2e-08 Score=107.25 Aligned_cols=215 Identities=9% Similarity=0.001 Sum_probs=104.3
Q ss_pred HHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHH-HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 039695 214 LEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGK-VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS 292 (605)
Q Consensus 214 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 292 (605)
..+|++.... .+-+...|...+.-+...|+.+.|. .+++..+.. ++.+..++-.++...-+.|+++.|+++|+++.
T Consensus 329 ~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 329 TYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444433 2223444444444444455555554 666555543 24445555555555666666666666665543
Q ss_pred C-------------CC------------cchHHHHHHHHHHcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccC
Q 039695 293 N-------------PS------------VVTYTSMIVGAAKYGLGRFSLDLFNEMISR-G-IKPNDVTFVGVLHACSHSG 345 (605)
Q Consensus 293 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~g 345 (605)
+ |+ ...|-..+....+.|..+.|..+|.+..+. + ..+......+.+.-. ..+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCC
Confidence 2 11 123555555555555566666666665543 1 111112211222211 123
Q ss_pred cHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC--CchhhHHHHHHHHHHHcCChHHHHH
Q 039695 346 LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDP--DGGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 346 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p--~~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
+.+.|..+|+..++.+. -+...+...++.....|+.+.|..+|++.. ..| +.....|...+.--..+|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35666666665554432 123344455555555566666666665532 112 1123456666665566666666666
Q ss_pred HHHHHHhcCCCC
Q 039695 423 ASNQLIESNQQV 434 (605)
Q Consensus 423 ~~~~~~~~~p~~ 434 (605)
+.+++.+..|++
T Consensus 563 v~~R~~~~~P~~ 574 (679)
T 4e6h_A 563 LEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHSTTC
T ss_pred HHHHHHHhCCCC
Confidence 666666666554
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=1e-08 Score=109.51 Aligned_cols=415 Identities=9% Similarity=-0.010 Sum_probs=278.7
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhC
Q 039695 49 VHSEILKSGFLSNTFTLNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQ---PQIALLLFQKMLGN 122 (605)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~ 122 (605)
.++..+... +-|...|..++..+.+.+.++.+..+|+++.. .+...|..-+..-.+.|+ ++.+..+|++.+..
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444444 56899999999999999999999999998843 466778888888888888 99999999999886
Q ss_pred C-CCCChhhHHHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------CCCHHH
Q 039695 123 L-VWPNEFTFATVIKACSMLADL--------ITGKQIHTHIETF-GF-QYN-LVVCSSLVDMYGK---------CNDVDG 181 (605)
Q Consensus 123 g-~~pd~~t~~~ll~a~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~y~~---------~g~~~~ 181 (605)
. ..|+...|..-+.-....++. +...++|+.++.. |. .++ ...|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 4 246777776666544444433 3455788877654 65 453 4678887776543 345788
Q ss_pred HHHHHhhcCC-CC---hhhHHH---HHHHH----------HHcCChhHHHHHHHHHHHcC-CCC---CC-----------
Q 039695 182 ARRVFDLMGC-RN---VVSWTS---IIVAH----------AQNAQGHEALEMFREFNYQS-RDR---PN----------- 229 (605)
Q Consensus 182 A~~~~~~m~~-~~---~~~~~~---li~~~----------~~~g~~~~A~~~~~~m~~~~-~~~---p~----------- 229 (605)
+.++|++... |. ...|.. +...+ -....++.|...+.++.... .+. |.
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 9999998765 31 123322 22111 00122334445554432210 010 10
Q ss_pred ------h---hHHHhHHHhhcccC-------chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHhccC
Q 039695 230 ------Q---HMLASVINACASLG-------RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSD-KVFNRIS 292 (605)
Q Consensus 230 ------~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~ 292 (605)
. ..|...+.---..+ ..+....+++..+..- +.+..+|-..+..+...|+.++|. ++|++..
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 0 11222222111111 1223455677777653 557788888888888899999996 9998876
Q ss_pred C--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCcHH
Q 039695 293 N--P-SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI---------KPN------------DVTFVGVLHACSHSGLVD 348 (605)
Q Consensus 293 ~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~pd------------~~t~~~ll~a~~~~g~~~ 348 (605)
. | +...|-..+...-+.|+.++|.++|+++..... .|+ ...|...+....+.|..+
T Consensus 372 ~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 372 QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 3 3 445677788888899999999999999886410 132 235777777777889999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHH
Q 039695 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG-RLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQ 426 (605)
Q Consensus 349 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 426 (605)
.|..+|....+..+ .+....|...+.+-.+.| +.+.|.++|+... .-|+ ++..|...+......|+.+.|..+|++
T Consensus 452 ~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 452 ASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999865411 122344544444444554 5899999998743 2232 267888889888899999999999999
Q ss_pred HHhcCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 427 LIESNQQ---VANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 427 ~~~~~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
+++..|+ ....|...+..-.+.|+.+.+.++.+++.+.-..
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9998873 3457888888888999999999999999887653
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=4.2e-11 Score=107.07 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=140.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039695 264 NDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHA 340 (605)
Q Consensus 264 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 340 (605)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567888899999999999999999998763 456788889999999999999999999988753 2345667777788
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChH
Q 039695 341 CSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVD 418 (605)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~ 418 (605)
+...++++.+...+..... +.|+ ...+..+...|.+.|++++|++.|++.. ..|+ ++.+|..+..++...|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8889999999999998864 3454 7888899999999999999999998753 4454 3779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 039695 419 IAVEASNQLIESNQQVA 435 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~~ 435 (605)
+|+..|+++++.+|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999998753
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=4.2e-11 Score=129.46 Aligned_cols=162 Identities=14% Similarity=0.223 Sum_probs=137.5
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHH
Q 039695 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCV 373 (605)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 373 (605)
..+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 356777788888888888888888888774 44 467788888888899999999999988863 4676 7888999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 039695 374 VDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 452 (605)
..+|.+.|++++|++.|++. ...|+ +...|..+..++...|++++|+..|+++++++|+++.+|..|+.+|...|+|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999874 34554 37799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 039695 453 NVHSLRSEMKR 463 (605)
Q Consensus 453 ~a~~~~~~m~~ 463 (605)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=8.1e-11 Score=114.56 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 039695 195 VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274 (605)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 274 (605)
.+|..+...|...|++++|+..|+++.... ........+....++..+...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDL-----------------------------EKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHHHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HHHcCCCCHHHHHHHHHHHHH
Confidence 455666666666666666666666654310 000000123345567778888
Q ss_pred HHhcCCHHHHHHHHhccCC-------C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHH
Q 039695 275 YAKCGSVNYSDKVFNRISN-------P----SVVTYTSMIVGAAKYGLGRFSLDLFNEMISR------GIKP-NDVTFVG 336 (605)
Q Consensus 275 y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~~~ 336 (605)
|...|++++|...|++..+ + ...+|..+...|...|++++|...|++..+. +..| ....+..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 8889999988888877642 1 2356888889999999999999999998864 2233 3456778
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhc-----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CCCc-
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKY-----GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQV----------DPDG- 399 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~p~~- 399 (605)
+...+...|++++|.++++.+.... +..|. ...+..+...|.+.|++++|.+.++++.. .+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 8888999999999999999886431 11343 66788899999999999999999987531 1110
Q ss_pred ----hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 400 ----GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 400 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
....+..+...+...+.+..+...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0112233334445566677777788888888888888999999999999999999999998765
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=1.4e-10 Score=116.96 Aligned_cols=91 Identities=9% Similarity=0.020 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCCHH
Q 039695 267 VASALVDMYAKCGSVNYSDKVFNRISN-----PSV----VTYTSMIVGAAKYGLGRFSLDLFNEMISR----GI-KPNDV 332 (605)
Q Consensus 267 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~ 332 (605)
+++.+...|...|++++|...|++..+ ++. .+++.+...|...|++++|+..|++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 444445555555555555555544331 110 23444455555555555555555544431 12 11233
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
++..+...+...|++++|...+++.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444555555555555555555544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=119.65 Aligned_cols=243 Identities=10% Similarity=-0.004 Sum_probs=142.0
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--------C---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc-----
Q 039695 160 QYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--------R---NVVSWTSIIVAHAQNAQGHEALEMFREFNYQ----- 223 (605)
Q Consensus 160 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 223 (605)
+.+..++..+...|...|++++|...|+++.. . ...+|..+...|...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33467788999999999999999999988743 1 2356778888889999999999999887653
Q ss_pred -CCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHh------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 039695 224 -SRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRS------GC-EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPS 295 (605)
Q Consensus 224 -~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 295 (605)
+.......++..+...+...|++++|...+..+.+. +. +...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~------------------------------ 153 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA------------------------------ 153 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH------------------------------
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH------------------------------
Confidence 201112334455555555666666666665555442 11 1112
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc------C
Q 039695 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISR------GIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKY------G 362 (605)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~ 362 (605)
..|..+...|...|++++|+.+|++.... +..|+ ..++..+...+...|++++|...++.+.... .
T Consensus 154 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 154 -KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp -HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 23444455555555555555555555442 11222 2355566666666777777777766664321 1
Q ss_pred CCC-------cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 363 IIP-------DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 363 ~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
..+ ....+..+...+...+.+.+|...++...........+|..+..++...|++++|...+++++++.|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 12222333344445566666666666654333334668999999999999999999999999988764
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=1.6e-10 Score=102.83 Aligned_cols=132 Identities=16% Similarity=0.078 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
..++..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++. ..|+ +...|..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 118 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGV 118 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHH
Confidence 334444444455555555555555554322 11234555556666666666666666665532 1222 2667777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.+...|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 78888888888888888888888877788888888888888888888888776543
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=1.3e-09 Score=106.28 Aligned_cols=178 Identities=8% Similarity=0.035 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039695 110 QIALLLFQKMLGNLVWPNEFTFATVIKACS-------MLADL-------ITGKQIHTHIETFGFQYNLVVCSSLVDMYGK 175 (605)
Q Consensus 110 ~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 175 (605)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++.+++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665532 113334544444443 23554 6677777776662113345566777777777
Q ss_pred CCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhc-ccCchhhHH
Q 039695 176 CNDVDGARRVFDLMGC--R-NVV-SWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACA-SLGRLVSGK 250 (605)
Q Consensus 176 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~-~~~~~~~a~ 250 (605)
.|++++|.++|++... | +.. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+.+.|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776543 2 232 67777777777777777777777766543 222223322211111 135555555
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 039695 251 VAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRI 291 (605)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 291 (605)
.+++..++.. +.+...+..++..+.+.|++++|+.+|++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555554432 223444444444444444444444444433
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1.6e-09 Score=109.22 Aligned_cols=229 Identities=7% Similarity=-0.098 Sum_probs=133.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-----hhHHH
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGC-----R----NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPN-----QHMLA 234 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~t~~ 234 (605)
....+...|++++|...|++... + ...+|..+...|...|++++|+..+.+........++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455666666666666665532 1 1245666666666677777777666665442101111 23455
Q ss_pred hHHHhhcccCchhhHHHHHHHHHHh----CCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----cchHH
Q 039695 235 SVINACASLGRLVSGKVAHGVVVRS----GCE-FNDVVASALVDMYAKCGSVNYSDKVFNRISN-----PS----VVTYT 300 (605)
Q Consensus 235 ~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~ 300 (605)
.+...+...|++++|...+....+. +.. ....++..+...|...|++++|.+.|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666777777777777666543 111 1124677788888888888888888877653 22 24577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhc
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRT 380 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 380 (605)
.+...|.+.|++++|...+++....... .++ ......+..+...|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~-----------------~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQK---------------AGD-----------------VIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTC-----------------HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------cCC-----------------HHHHHHHHHHHHHHhCC
Confidence 7888899999999999999886642000 000 00011123344444555
Q ss_pred CC---HHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 381 GR---LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 381 g~---~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
|+ +++|+.++++....|+ ....+..+...+...|+++.|...++++++.
T Consensus 317 ~~~~~~~~al~~~~~~~~~~~-~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKMLYAD-LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCcCHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55 5556666665532222 1335556666667777777777777766654
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=4.4e-10 Score=104.24 Aligned_cols=164 Identities=10% Similarity=0.017 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDM 376 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 376 (605)
.|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++... ...|+ ...+..+...
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHHHHHH
Confidence 3334444444444444444444444443222344444444444444455555555444443 22332 3444444444
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCchh-------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHH
Q 039695 377 LGRTGRLDEAYKLAKSIQ-VDPDGGP-------LLWGTLLSASRLHGRVDIAVEASNQLIESNQQ--VANAYVTLSNTYA 446 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~-~~p~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~ 446 (605)
|...|++++|++.+++.. ..|+. . ..|..+...+...|++++|+..++++++.+|+ ++.++..++.+|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555444421 12220 2 23444444444555555555555555555554 4444555555554
Q ss_pred hcCC---------------------------hhHHHHHHHHHHhCC
Q 039695 447 LAGE---------------------------WENVHSLRSEMKRTG 465 (605)
Q Consensus 447 ~~g~---------------------------~~~a~~~~~~m~~~~ 465 (605)
..|+ +++|...+++..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4444 488998888887754
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=1.5e-09 Score=100.60 Aligned_cols=204 Identities=8% Similarity=0.014 Sum_probs=142.0
Q ss_pred CChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CcchHHHHHH
Q 039695 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN--P-SVVTYTSMIV 304 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 304 (605)
.|+..+......+...|++++|...+...++...+++...+..+...|.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456677777778888888888888888888876436666666688888888888888888887753 2 3456777888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCC-CH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---HHHHHHH
Q 039695 305 GAAKYGLGRFSLDLFNEMISRGIKP-ND-------VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD---AKHYTCV 373 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 373 (605)
.|...|++++|+..|++..+. .| +. ..|..+...+...|++++|...|+... .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 888888888888888888774 23 33 346666677777888888888888775 45565 4566677
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 374 VDMLGRTGRL--DEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 374 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...|...|+. ++|..+ . ..+ ...|..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~--~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSN--KEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTC--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCC--HHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777655543 222211 1 112 33343333 23455679999999999999999987766665543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=9.6e-10 Score=97.69 Aligned_cols=169 Identities=14% Similarity=0.023 Sum_probs=142.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999999875 356678888999999999999999999998862 34677888888999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHH
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIA 420 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a 420 (605)
...|++++|.+.++.+... .+.+...+..+...+.+.|++++|.+.+++.. ..|+ +...|..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998654 23457888899999999999999999998853 3333 277899999999999999999
Q ss_pred HHHHHHHHhcCCCCCch
Q 039695 421 VEASNQLIESNQQVANA 437 (605)
Q Consensus 421 ~~~~~~~~~~~p~~~~~ 437 (605)
...++++++..|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999998877643
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=1.5e-08 Score=101.64 Aligned_cols=197 Identities=11% Similarity=0.010 Sum_probs=133.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-------C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--C--CHH
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISN-------P----SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIK--P--NDV 332 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~ 332 (605)
...+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44566667777777777776665532 1 1134555667778888888888888887653221 1 234
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHH----HHHHHHhhcCCHHHHHHHHHhCCC-CCCc---hhhH
Q 039695 333 TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYT----CVVDMLGRTGRLDEAYKLAKSIQV-DPDG---GPLL 403 (605)
Q Consensus 333 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~-~p~~---~~~~ 403 (605)
++..+...+...|++++|...++.......-... ..... ..+..+...|++++|...+++... .|.. ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5667777788889999999998887543221111 11111 233457789999999999988642 2210 1225
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQV------ANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+..+...+...|++++|...++++++..+.. ..++..++.+|...|+.++|...+++..+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6778888999999999999999988754321 136777889999999999999999887653
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=4.1e-10 Score=116.85 Aligned_cols=208 Identities=11% Similarity=-0.002 Sum_probs=149.7
Q ss_pred hhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCch-hhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 039695 210 GHEALEMFREFNYQSRDRPNQHMLASVINACASLGRL-VSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVF 288 (605)
Q Consensus 210 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 288 (605)
.++++..+.+..... +.+...+..+..++...|++ ++|...+..+++.. +.+...+..+...|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555555544332 33556666666677777777 77777777776654 445667777888888888888888888
Q ss_pred hccCC--CCcchHHHHHHHHHHc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CcHHH
Q 039695 289 NRISN--PSVVTYTSMIVGAAKY---------GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS--------GLVDE 349 (605)
Q Consensus 289 ~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------g~~~~ 349 (605)
++..+ |+...|..+...|... |++++|+..|++..+.. +-+...+..+..++... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 77653 5666777777777777 88888888888888752 22467777788888777 88888
Q ss_pred HHHHHHHHHHhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHH
Q 039695 350 GIQHLDSMYRKYGIIP----DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEAS 424 (605)
Q Consensus 350 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~ 424 (605)
|...|+...+ +.| +...|..+..+|.+.|++++|.+.|++.. ..|+ +...|..+..++...|++++|...+
T Consensus 240 A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888864 355 57888888888889999999988888743 3444 2667888888888888887777654
Q ss_pred H
Q 039695 425 N 425 (605)
Q Consensus 425 ~ 425 (605)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1.6e-08 Score=101.59 Aligned_cols=230 Identities=6% Similarity=-0.050 Sum_probs=131.9
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHh
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGC-----RN----VVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINA 239 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 239 (605)
....+...|++++|...|++... ++ ..++..+...|...|++++|+..+.+........++..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 178 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS-------- 178 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH--------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch--------
Confidence 33445666777777777665532 11 23555666666777777777766666543210011100
Q ss_pred hcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----cchHHHHHHHHHHcC
Q 039695 240 CASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-----PS----VVTYTSMIVGAAKYG 310 (605)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 310 (605)
.....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|
T Consensus 179 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 179 ----------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00122344445555555555555555544331 11 134555666677777
Q ss_pred ChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCc-HHHHHHHHHHHhhcCC-
Q 039695 311 LGRFSLDLFNEMISR----GIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI--IPD-AKHYTCVVDMLGRTGR- 382 (605)
Q Consensus 311 ~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~-~~~~~~li~~~~~~g~- 382 (605)
++++|+..|++.... +.+....++..+...+...|++++|...+++......- .|. ...+..+...|...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 777777777766551 22223566777778888888888888888877544322 122 4455666666777777
Q ss_pred --HHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 383 --LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 383 --~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
+++|+..+++....|+ ....+..+...+...|+++.|...++++++
T Consensus 317 ~~~~~al~~~~~~~~~~~-~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKKNLHAY-IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778887777543222 133555666777777777777777766654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.4e-09 Score=109.36 Aligned_cols=222 Identities=7% Similarity=0.001 Sum_probs=153.9
Q ss_pred cccCchhhHHHHHHHHHHhC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----cchHHHHHHH
Q 039695 241 ASLGRLVSGKVAHGVVVRSG--CE---FNDVVASALVDMYAKCGSVNYSDKVFNRISN-----PS-----VVTYTSMIVG 305 (605)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 305 (605)
...|++++|...+..+.+.. .+ ....++..+...|...|+++.|...+++..+ ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34455555555555544321 01 1234666777778888888877777766542 12 3467888899
Q ss_pred HHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCc-HHHHHHHHHHH
Q 039695 306 AAKYGLGRFSLDLFNEMISR----GIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG--IIPD-AKHYTCVVDML 377 (605)
Q Consensus 306 ~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~~~~li~~~ 377 (605)
|...|++++|++.|++..+. +..+ ...++..+..++...|++++|...+++...-.. ..|. ..++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 99999999999999987752 1111 134677888899999999999999998864111 2233 77888899999
Q ss_pred hhcCCHHHHHHHHHhCC----CCCC-chhhHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 039695 378 GRTGRLDEAYKLAKSIQ----VDPD-GGPLLWGTLLSASRLHGR---VDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449 (605)
Q Consensus 378 ~~~g~~~~A~~~~~~m~----~~p~-~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 449 (605)
.+.|++++|.+.+++.. ..++ .....+..+...+...++ +++|...+++. ...|.....+..++..|.+.|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 99999999999998742 1111 113355666666777777 77777777662 222334457788999999999
Q ss_pred ChhHHHHHHHHHHh
Q 039695 450 EWENVHSLRSEMKR 463 (605)
Q Consensus 450 ~~~~a~~~~~~m~~ 463 (605)
++++|.+.+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988754
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=5.2e-08 Score=97.59 Aligned_cols=222 Identities=13% Similarity=-0.021 Sum_probs=111.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc----hhHHHHHHHH
Q 039695 102 GYINMGQPQIALLLFQKMLGNLVWPNEF----TFATVIKACSMLADLITGKQIHTHIETFGF-QYN----LVVCSSLVDM 172 (605)
Q Consensus 102 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~Li~~ 172 (605)
.+...|++++|...+++........+.. ++..+...+...|+++.|.+.+++..+... ..+ ..+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445666666666666655543111111 233344455556666666666666554310 011 1224455566
Q ss_pred HHhCCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC--ChhHHHhHHH
Q 039695 173 YGKCNDVDGARRVFDLMGC-------R----NVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRD-RP--NQHMLASVIN 238 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p--~~~t~~~ll~ 238 (605)
|...|++++|...+++... + ....+..+...+...|++++|...+++....... .+ ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 6666777666666655421 1 1223444555666667777777766665543200 01 1123444444
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCc---HhHH---HHHHHHHHhcCCHHHHHHHHhccCCCCc-------chHHHHHHH
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFN---DVVA---SALVDMYAKCGSVNYSDKVFNRISNPSV-------VTYTSMIVG 305 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~---~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~ 305 (605)
.+...|++++|...+.......-.++ .... ..++..+...|+.++|...++....++. ..+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 55555666666666655544211111 1111 1233445566777777777666654221 123444555
Q ss_pred HHHcCChhHHHHHHHHHH
Q 039695 306 AAKYGLGRFSLDLFNEMI 323 (605)
Q Consensus 306 ~~~~g~~~~A~~l~~~m~ 323 (605)
+...|++++|...+++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666665554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=2.3e-09 Score=102.43 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=149.1
Q ss_pred cCchhhHHHHHHHHHHh-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCcchHHHHHH
Q 039695 243 LGRLVSGKVAHGVVVRS-------GCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-----------PSVVTYTSMIV 304 (605)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~ 304 (605)
.|+++.|...+...++. ..+....++..+...|...|++++|...|++..+ ....+|..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34455555554444431 2233456777888888888888888888876642 12357888889
Q ss_pred HHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----CCCCc-HHHHH
Q 039695 305 GAAKYGLGRFSLDLFNEMISR------GIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKY-----GIIPD-AKHYT 371 (605)
Q Consensus 305 ~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~ 371 (605)
.|...|++++|+..|++.... .-.| ...++..+...+...|++++|..++++..... +-.|+ ...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998764 1123 35677888889999999999999999886431 11343 67788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC----------CCCCchhhHHHHHHHHHHHcCChHHH------HHHHHHHHhcCCCCC
Q 039695 372 CVVDMLGRTGRLDEAYKLAKSIQ----------VDPDGGPLLWGTLLSASRLHGRVDIA------VEASNQLIESNQQVA 435 (605)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~----------~~p~~~~~~~~~ll~~~~~~g~~~~a------~~~~~~~~~~~p~~~ 435 (605)
.+...|.+.|++++|.+.+++.. ..+. ....|..+.......+....+ ...++......|...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGD-NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSS-CCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999997643 1122 133555555444443333222 222222222334555
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.++..++.+|...|++++|.+++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6888999999999999999999998765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.8e-09 Score=103.03 Aligned_cols=189 Identities=10% Similarity=-0.001 Sum_probs=126.2
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHH
Q 039695 273 DMYAKCGSVNYSDKVFNRISN-----PS----VVTYTSMIVGAAKYGLGRFSLDLFNEMISR----GIKP-NDVTFVGVL 338 (605)
Q Consensus 273 ~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll 338 (605)
..|...|++++|...|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+. |-.+ -..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666655432 11 346777777788888888888888776652 1111 134677888
Q ss_pred HHHhcc-CcHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchh------hHHHH
Q 039695 339 HACSHS-GLVDEGIQHLDSMYRKYGIIPD----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGP------LLWGT 406 (605)
Q Consensus 339 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~------~~~~~ 406 (605)
..|... |++++|...|++..+-..-..+ ..++..+...|.+.|++++|++.|++.. ..|+... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 9999999999988643211111 4568889999999999999999998743 2232111 16778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHH
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESNQQVANA-----YVTLSNTYA--LAGEWENVHSLRSEM 461 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 461 (605)
+..++...|+++.|...+++.++++|..... +..++..|. ..+++++|.+.++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8889999999999999999999999876543 344566664 456787887777544
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=8.1e-09 Score=97.87 Aligned_cols=202 Identities=7% Similarity=-0.026 Sum_probs=114.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-HHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN--PS----VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI-KPN-DVTFVG 336 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~t~~~ 336 (605)
...+..+...+.+.|++++|...|+.+.+ |+ ...+..+...|.+.|++++|+..|++..+... .|+ ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555555555555555555542 22 23444455555555555555555555554311 111 223334
Q ss_pred HHHHHhc--------cCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHH
Q 039695 337 VLHACSH--------SGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTL 407 (605)
Q Consensus 337 ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~l 407 (605)
+..++.. .|++++|...|+.+.+.+ |+ ......+. .+..+. +. ....+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~--------------~~~~~~--~~-~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQ--------------KIRELR--AK-LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHH--------------HHHHHH--HH-HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHH--------------HHHHHH--HH-HHHHHHHH
Confidence 4444444 555555555555554321 22 11111100 000000 00 01224667
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeE
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVA---NAYVTLSNTYALA----------GEWENVHSLRSEMKRTGIHKEPGCSW 474 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 474 (605)
...+...|+++.|+..++++++..|+++ .++..++.+|... |++++|...++++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 8889999999999999999999999854 4788999999877 899999999999987543
Q ss_pred EEeCCEEeeeeccccCccchHHHHHHHHHHHHHHH
Q 039695 475 VEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509 (605)
Q Consensus 475 ~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 509 (605)
.++...++...+.++...+.
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHH
Confidence 23445556666666666654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=1.8e-09 Score=116.69 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=140.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGV 337 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~l 337 (605)
+.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|+..|++..+. .| +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34567888899999999999999999998763 44678899999999999999999999999884 44 46788999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcC
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g 415 (605)
..++...|++++|.+.|++.++ +.|+ ...|..+..+|.+.|++++|++.|++. ...|+ +...|..|..++...|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence 9999999999999999998863 4676 889999999999999999999999874 34555 3778999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 039695 416 RVDIAVEASNQLIESN 431 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~ 431 (605)
++++|.+.+++++++.
T Consensus 160 ~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 160 DWTDYDERMKKLVSIV 175 (723)
T ss_dssp CCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999988754
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=2.7e-08 Score=94.85 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhc------CCCCc-HHHHHHHHHHHhh------cCCHHHHHHHHHhCCCCCC
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKY------GIIPD-AKHYTCVVDMLGR------TGRLDEAYKLAKSIQVDPD 398 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~p~ 398 (605)
.++..+...+...|++++|..++++..+.. ...+. ...+..+...+.. ...+.++...++.....+.
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 445555566666666666666666554321 11121 2222222222222 2334455555555543322
Q ss_pred chhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 399 GGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 399 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
....+|..+...+...|++++|...++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23557888899999999999999999988764
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=5.1e-08 Score=90.05 Aligned_cols=183 Identities=8% Similarity=-0.041 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHH
Q 039695 266 VVASALVDMYAKCGSVNYSDKVFNRISN--PSV----VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND--VTFVGV 337 (605)
Q Consensus 266 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~l 337 (605)
..+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444555666677777777777776653 322 34556666777777777777777777663221111 122223
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHH------------
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLW------------ 404 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~------------ 404 (605)
..++...+. .. ...|..+...+...|++++|...|+++. ..|+. ...+
T Consensus 85 g~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 85 GLTNMALDD-----SA-------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-QYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-----hh-------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-hhHHHHHHHHHHHHHH
Confidence 333322100 00 0000111112223445555555555432 22321 1122
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 405 -----GTLLSASRLHGRVDIAVEASNQLIESNQQVA---NAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 405 -----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
..+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 3456678899999999999999999999876 46889999999999999999999999887653
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=8.5e-08 Score=91.11 Aligned_cols=160 Identities=10% Similarity=-0.018 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-----cHHHHHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-----DAKHYTC 372 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~ 372 (605)
+..+..++...|++++|++++.+-+..|..+ +...+..++..+.+.|+++.|.+.++.|.+ ..| +..+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHH
Confidence 3344444555555555555555544433211 233444445555555555555555555531 233 1222233
Q ss_pred HHHH--Hhh--cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCCchH
Q 039695 373 VVDM--LGR--TGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIES----------NQQVANAY 438 (605)
Q Consensus 373 li~~--~~~--~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~ 438 (605)
|..+ ... .++.++|..+|+++...++. ..+-..|+.++...|++++|++.++.+.+. +|+++.++
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 3322 111 22555555555554322210 112222333555556666666655554443 35555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
..++.++...|+ +|.++++++++.
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 555555555554 555555555553
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=1.4e-08 Score=84.50 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=71.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcC
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g 415 (605)
+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++. ..|+ +...|..+...+...|
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhc
Confidence 3334444444444444444443210 1123444445555555555555555555432 1121 1456666667777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 416 RVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+++.|...++++++..|.++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777776667777777777777777777777776554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.4e-07 Score=89.63 Aligned_cols=239 Identities=8% Similarity=-0.015 Sum_probs=159.0
Q ss_pred HhCCCHHHHHHHHhhcCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHH
Q 039695 174 GKCNDVDGARRVFDLMGCRNV-VSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVA 252 (605)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 252 (605)
.-.|.+..++.-...+...+. ..---+.++|...|++.... . -.|....+..+..-+ ..+ +...
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~-~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------P-TSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------S-SSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------C-CCHHHHHHHHHHHHh-ccc----HHHH
Confidence 345777776665555533221 12222446677777665310 1 233332333322222 211 5556
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 039695 253 HGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNP-----SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGI 327 (605)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 327 (605)
++..++.+ +++......+...|...|++++|.+++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 344555567888899999999999999987432 345677788899999999999999999987 4
Q ss_pred CC-----CHHHHHHHHHHHhc--cC--cHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---
Q 039695 328 KP-----NDVTFVGVLHACSH--SG--LVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV--- 395 (605)
Q Consensus 328 ~p-----d~~t~~~ll~a~~~--~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 395 (605)
.| +..+...+..++.. .| +..+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 36666677766332 34 899999999998643 45533434455588999999999999986432
Q ss_pred --------CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 396 --------DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 396 --------~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.|+ ++.+...++......|+ .|.++++++.+..|+++.
T Consensus 243 ~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 243 36777677777777787 889999999999999874
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=1.2e-07 Score=91.48 Aligned_cols=67 Identities=9% Similarity=-0.038 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCC-hhHHHhHHHhhcccCchhhHHHHH
Q 039695 179 VDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQ----SRDRPN-QHMLASVINACASLGRLVSGKVAH 253 (605)
Q Consensus 179 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 253 (605)
+++|...|++. ...|...|++++|++.|.+.... | ..++ ..+|..+..++...|++++|...+
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555543 33455566666666666554332 1 1111 234444445555555555555554
Q ss_pred HHHH
Q 039695 254 GVVV 257 (605)
Q Consensus 254 ~~~~ 257 (605)
...+
T Consensus 101 ~~Al 104 (292)
T 1qqe_A 101 ENAI 104 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.4e-09 Score=93.42 Aligned_cols=139 Identities=7% Similarity=-0.072 Sum_probs=91.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCH
Q 039695 306 AAKYGLGRFSLDLFNEMISRGIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRL 383 (605)
Q Consensus 306 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 383 (605)
+...|+.++|+..+++.... .|+ ...+..+...|...|++++|.+.|+..++ +.|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 33445566666666655432 222 23444566666777777777777776653 3454 66777777777777777
Q ss_pred HHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 384 DEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEA-SNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 384 ~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
++|+..|++. ...|+ ++..|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777663 23443 266778888888888887665554 578888888888888877777776664
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.87 E-value=4.5e-08 Score=92.64 Aligned_cols=203 Identities=14% Similarity=0.029 Sum_probs=145.0
Q ss_pred CChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----cch
Q 039695 228 PNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFN---DVVASALVDMYAKCGSVNYSDKVFNRISN--PS----VVT 298 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~ 298 (605)
.+...+-.....+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ |+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456667777788889999999999999999865 223 67888899999999999999999998864 32 235
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHH
Q 039695 299 YTSMIVGAAK--------YGLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKH 369 (605)
Q Consensus 299 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 369 (605)
+..+..++.. .|++++|+..|++.... .|+. ..... ...+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 6677788888 99999999999999885 3432 12111 1111111100 0223
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc--hhhHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCc
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG--GPLLWGTLLSASRLH----------GRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
+..+...|.+.|++++|+..|+++. ..|+. ....+..+..++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 5567888999999999999998753 23331 245777788888766 8899999999999999999864
Q ss_pred ---hHHHHHHHHHhcCChh
Q 039695 437 ---AYVTLSNTYALAGEWE 452 (605)
Q Consensus 437 ---~~~~l~~~y~~~g~~~ 452 (605)
+...+..++.+.++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334444444444433
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=3.8e-08 Score=81.87 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDML 377 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 377 (605)
.|..+...+...|++++|..+|+++.... +.+...+..+...+...|++++|..+++.+.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887753 2356677777888888889999998888885431 23467778888888
Q ss_pred hhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 378 GRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 378 ~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
.+.|++++|.+.++++. ..|+ +..+|..+...+...|+++.|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999998887753 2232 2678888889999999999999999999988875
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=3.9e-08 Score=94.61 Aligned_cols=162 Identities=10% Similarity=-0.027 Sum_probs=121.0
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHH-HHH
Q 039695 296 VVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYT-CVV 374 (605)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li 374 (605)
...+..+...+.+.|++++|...|++..... +-+...+..+...+...|++++|...++.+.. ..|+..... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHH
Confidence 3445556666777788888888888877742 22456777778888888888888888887743 345533322 223
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCh
Q 039695 375 DMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV--ANAYVTLSNTYALAGEW 451 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~ 451 (605)
..+.+.++.++|...+++.. ..|+ +...+..+...+...|++++|+..++++++.+|++ ..++..|+.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33666777777887777643 3454 37789999999999999999999999999999988 77899999999999999
Q ss_pred hHHHHHHHHHH
Q 039695 452 ENVHSLRSEMK 462 (605)
Q Consensus 452 ~~a~~~~~~m~ 462 (605)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99988887654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=6.4e-09 Score=112.86 Aligned_cols=169 Identities=12% Similarity=-0.014 Sum_probs=129.3
Q ss_pred HhcCCHHHHHHHHhccC-----------CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 039695 276 AKCGSVNYSDKVFNRIS-----------NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344 (605)
Q Consensus 276 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 344 (605)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888887765 2455677788888888888888888888888742 22556777777888888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHH
Q 039695 345 GLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 345 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
|++++|.+.|++..+ +.|+ ...+..+..+|.+.|++++ ++.|++.. ..|+ +...|..+..++...|++++|+.
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888763 3554 6778888888888888888 88887743 3444 26688888888888899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 423 ASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9998888888888888888888877665
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=2.1e-08 Score=85.78 Aligned_cols=104 Identities=9% Similarity=-0.073 Sum_probs=92.7
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 362 GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
.+.|+ ...+..+...+.+.|++++|...|++.. ..|+ ++..|..+..++...|++++|+..|+++++++|+++.+|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 56676 7778888899999999999999998854 4453 3789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 440 TLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 440 ~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.++.+|.+.|++++|.+.|++..+...
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999987543
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=5.6e-08 Score=103.46 Aligned_cols=160 Identities=10% Similarity=0.026 Sum_probs=123.4
Q ss_pred cCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 039695 278 CGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHL 354 (605)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 354 (605)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 346788889999999999999999999998852 235678888999999999999999999
Q ss_pred HHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHc---CChHHHHHHHHHHHh
Q 039695 355 DSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLH---GRVDIAVEASNQLIE 429 (605)
Q Consensus 355 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 429 (605)
++..+. .|+ ...+..+..+|.+.|++++|.+.+++.. ..|+ +...+..+..++... |+.++|.+.++++++
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 998643 454 7889999999999999999999998853 3443 267889999999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 039695 430 SNQQVANAYVTLS 442 (605)
Q Consensus 430 ~~p~~~~~~~~l~ 442 (605)
.+|.+...|..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=3.1e-08 Score=84.66 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=90.3
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 362 GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
.+.|+ ...+..+...+.+.|++++|...|++.. ..|+ ++..|..+..++...|++++|+..++++++++|+++.++.
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 55665 6677788889999999999999998753 3443 3788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 440 TLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 440 ~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++.+|...|++++|.+.+++..+..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999987754
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=1.4e-08 Score=87.16 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=102.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHc
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLH 414 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~ 414 (605)
|...+...|++++|+..+.... ...|+ ...+..+...|.+.|++++|++.|++. ...|+ ++.+|..+..++...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3345567789999999988764 44555 556677899999999999999999884 34554 378999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 039695 415 GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSL-RSEMKRT 464 (605)
Q Consensus 415 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~~ 464 (605)
|++++|+..|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887765 4776664
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=1.1e-06 Score=84.55 Aligned_cols=162 Identities=10% Similarity=-0.017 Sum_probs=120.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHHHHH
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRG-IKPNDV----TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKHYTC 372 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 372 (605)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667788899999999998887632 223321 2334666677788999999999988653222223 346888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQ-------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV------ANAYV 439 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 439 (605)
+...|...|++++|.+.+++.. ..+.....+|..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999998887743 1222123478899999999999999999999999764322 45889
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 039695 440 TLSNTYALAGE-WENVHSLRSEMKR 463 (605)
Q Consensus 440 ~l~~~y~~~g~-~~~a~~~~~~m~~ 463 (605)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887754
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=1.1e-07 Score=84.01 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=59.6
Q ss_pred HHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 386 AYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV--ANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 386 A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
|...+++. ...|+ ++..|..+..++...|++++|...++++++.+|+. +.++..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44555442 22343 26788888889999999999999999999988865 4588899999999999999998888764
Q ss_pred h
Q 039695 463 R 463 (605)
Q Consensus 463 ~ 463 (605)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=7.6e-07 Score=81.18 Aligned_cols=164 Identities=7% Similarity=-0.135 Sum_probs=124.3
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHhcCCCCcHHH
Q 039695 294 PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG----LVDEGIQHLDSMYRKYGIIPDAKH 369 (605)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 369 (605)
.++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.++|+...+ . -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence 345566666667777778888888888877764 45566666666766 6 78889888888743 2 24667
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCCCCCC--chhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 370 YTCVVDMLGR----TGRLDEAYKLAKSIQVDPD--GGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 370 ~~~li~~~~~----~g~~~~A~~~~~~m~~~p~--~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
+..|..+|.. .+++++|+++|++.....+ ..+..+..|...|.. .++.++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 7899999999988653222 125788888888888 88999999999999988 66677899
Q ss_pred HHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 039695 440 TLSNTYALA-G-----EWENVHSLRSEMKRTGI 466 (605)
Q Consensus 440 ~l~~~y~~~-g-----~~~~a~~~~~~m~~~~~ 466 (605)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999865 3 89999999999888765
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=6.4e-08 Score=80.08 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=81.6
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 362 GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
-+.|+ ...+......|.+.|++++|++.|++. ...|+ ++..|..+..++...|++++|+..++++++++|+++.+|.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 35665 566777788888888888888888774 33443 2678888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 440 TLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 440 ~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++.+|...|++++|.+.+++..+..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 88888888888888888888877643
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=2.2e-05 Score=81.29 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=45.0
Q ss_pred CChhHHHHHHhcCCC--CChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCCC-ChhhHHHHHHHHh----ccCChHH
Q 039695 76 KKTQVARQLFDEMLE--PNVVSYTSLMAGYINMGQ-PQIALLLFQKMLGN-LVWP-NEFTFATVIKACS----MLADLIT 146 (605)
Q Consensus 76 g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~ 146 (605)
|+++.+..+|++... |++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 667777777776533 677777777666665553 34455566665543 3333 3334444444332 1345666
Q ss_pred HHHHHHHHHH
Q 039695 147 GKQIHTHIET 156 (605)
Q Consensus 147 a~~~~~~~~~ 156 (605)
+..+|+.++.
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=2.5e-07 Score=100.42 Aligned_cols=189 Identities=9% Similarity=-0.036 Sum_probs=143.5
Q ss_pred cccCchhhHHHHHHHHH--------HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHc
Q 039695 241 ASLGRLVSGKVAHGVVV--------RSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKY 309 (605)
Q Consensus 241 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 309 (605)
...|++++|.+.+..+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888887 32 245667888888999999999999999998874 4567888889999999
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHH
Q 039695 310 GLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 310 g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 387 (605)
|++++|+..|++..+. .| +...+..+..++...|++++ .+.|++..+ +.|+ ...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999885 34 56778888889999999999 999998864 3565 788999999999999999999
Q ss_pred HHHHhCC-CCCCchhhHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCCch
Q 039695 388 KLAKSIQ-VDPDGGPLLWGTLLSASRLHGR-----VDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 388 ~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 437 (605)
+.|++.. ..|+ +...|..+..++...++ .+...++.+.+.+..+..+..
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9999865 4454 36678888888766555 234444444444555544443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=1.7e-07 Score=99.79 Aligned_cols=145 Identities=10% Similarity=-0.030 Sum_probs=81.4
Q ss_pred CchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHH
Q 039695 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFN 320 (605)
Q Consensus 244 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 320 (605)
|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 33456666677777777777777777766543 234566666667777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 039695 321 EMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRT---GRLDEAYKLAKSI 393 (605)
Q Consensus 321 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---g~~~~A~~~~~~m 393 (605)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 766642 224556666666677777777777777766432 333 55666666667666 7777777766653
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=2.2e-07 Score=84.52 Aligned_cols=128 Identities=9% Similarity=0.007 Sum_probs=85.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhc
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRT 380 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 380 (605)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+ +.|+ ...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHH
Confidence 6777778888888888888877742 22456777777788888888888888887753 3554 67777777777655
Q ss_pred CC--HHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039695 381 GR--LDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV 434 (605)
Q Consensus 381 g~--~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 434 (605)
|. .+.+...++... .|++....|..+..++...|++++|+..|++++++.|+.
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 43 344555565543 344223344555666677788888888888888888863
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=3.3e-07 Score=88.99 Aligned_cols=221 Identities=8% Similarity=-0.050 Sum_probs=148.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 039695 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDK 286 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 286 (605)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456777888877766532 111 0 11135666666655543 445667788888877
Q ss_pred HHhccCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 039695 287 VFNRISN-----PS----VVTYTSMIVGAAKYGLGRFSLDLFNEMISRG---IKPN--DVTFVGVLHACSHSGLVDEGIQ 352 (605)
Q Consensus 287 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~ 352 (605)
.|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776542 11 3467788888999999999999998876521 1122 3567778888888 99999999
Q ss_pred HHHHHHHhcCCC---C-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCC--chhhHHHHHHHHHHHcCChHHHHH
Q 039695 353 HLDSMYRKYGII---P-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-V---DPD--GGPLLWGTLLSASRLHGRVDIAVE 422 (605)
Q Consensus 353 ~~~~m~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~--~~~~~~~~ll~~~~~~g~~~~a~~ 422 (605)
.|++...-..-. + ...++..+...|.+.|++++|++.|++.. . .++ .....+..+..++...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999876432111 1 15678889999999999999999998743 1 111 012366777778888899999999
Q ss_pred HHHHHHhcCCCCCch-----HHHHHHHHHhcCChhHHHH
Q 039695 423 ASNQLIESNQQVANA-----YVTLSNTYALAGEWENVHS 456 (605)
Q Consensus 423 ~~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 456 (605)
.+++.+ ..|..... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88876543 33455555 5677665555
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=2.6e-07 Score=78.26 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=88.7
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 362 GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
.+.|+ ...+..+...+.+.|++++|...|++.. ..|+ +...|..+..++...|++++|+..++++++++|+++.++.
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45554 5666777888899999999999998753 3443 3788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 440 TLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 440 ~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.++.+|...|++++|.+.+++..+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999887653
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=3.4e-07 Score=88.96 Aligned_cols=199 Identities=9% Similarity=-0.021 Sum_probs=149.0
Q ss_pred ccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHH
Q 039695 242 SLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNE 321 (605)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 321 (605)
..|++++|.+++....+..-. . .+...|+++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788888888877764311 1 12115788888888765 36678899999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCc--HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 039695 322 MISR----GIKPN-DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGI--IPD--AKHYTCVVDMLGRTGRLDEAYKLAKS 392 (605)
Q Consensus 322 m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (605)
..+. |-.+. ..+|..+...|...|++++|...|++...-+.- .|. ..++..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 357888888999999999999999887543211 122 5678889999988 999999999887
Q ss_pred CC-CCC---C--chhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCChhHHHHHHHH
Q 039695 393 IQ-VDP---D--GGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA------NAYVTLSNTYALAGEWENVHSLRSE 460 (605)
Q Consensus 393 m~-~~p---~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~ 460 (605)
.. ..| + ....++..+...+...|++++|+..+++++++.|.+. ..+..++.+|...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 111 1 1135788899999999999999999999998765543 2667778888899999999999998
Q ss_pred HH
Q 039695 461 MK 462 (605)
Q Consensus 461 m~ 462 (605)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=4.6e-07 Score=82.46 Aligned_cols=127 Identities=9% Similarity=0.003 Sum_probs=101.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASR 412 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~ 412 (605)
+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++.. ..|+ +...|..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 444555666778888888877755 35677778888888888888888888887643 2333 2678888999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 413 LHGRVDIAVEASNQLIESNQQVA----------------NAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 413 ~~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
..|++++|+..++++++..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999999888777 7899999999999999999999999887544
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=1.2e-05 Score=83.33 Aligned_cols=344 Identities=10% Similarity=-0.011 Sum_probs=193.4
Q ss_pred cCC-ChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC-hHHHHHHH
Q 039695 74 RLK-KTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-LITGKQIH 151 (605)
Q Consensus 74 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~~~ 151 (605)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++.+.. .|+...|..-++-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 37777777776522 2211 7899999999999884 4788888887776665553 45577788
Q ss_pred HHHHHh-CCC-CchhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 039695 152 THIETF-GFQ-YNLVVCSSLVDMYGK----CNDVDGARRVFDLMGC-RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQS 224 (605)
Q Consensus 152 ~~~~~~-g~~-~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 224 (605)
+.++.. |.. .+..+|...+..+.. .|+++.+.++|++... |. ..+..+-..| ..+....
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y-------------~~fE~~~ 137 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDF-------------ENFELEL 137 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHH-------------HHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHH-------------HHHHHHh
Confidence 887765 433 366777777776542 4678889999988744 21 1111111111 1111110
Q ss_pred CCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CC-----HHHHHHHHhccCC---C
Q 039695 225 RDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC--GS-----VNYSDKVFNRISN---P 294 (605)
Q Consensus 225 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~-----~~~A~~~~~~~~~---~ 294 (605)
+..+...++... .+.+..|+.++..+...--..+...|...++.--.. |- .+.+..+|+++.. .
T Consensus 138 ----~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~ 211 (493)
T 2uy1_A 138 ----NKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY 211 (493)
T ss_dssp ----CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred ----ccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC
Confidence 111111111111 012233333333332210001223444444432221 10 2345556666543 3
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--------CCC-
Q 039695 295 SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG--------IIP- 365 (605)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p- 365 (605)
+...|-..+.-+.+.|+.++|..+|++.... |+...+.....-+...+ + +++.+...+- ..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~---~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---A---VYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---H---HHHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---H---HHHHHHHHHHhhccchhhhhcc
Confidence 4566777777778889999999999998886 44332221111111111 1 1222222110 011
Q ss_pred --cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 039695 366 --DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL-HGRVDIAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 366 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
....|...+..+.+.+.++.|..+|++. ..|.....+|......-.. .++.+.|..+|+.+++..|+++..+...+
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 1356777777777888999999999987 3343224455433322222 33699999999999998888887777788
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 039695 443 NTYALAGEWENVHSLRSEM 461 (605)
Q Consensus 443 ~~y~~~g~~~~a~~~~~~m 461 (605)
+...+.|+.+.|..+|++.
T Consensus 362 d~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888999999999999886
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.59 E-value=7.9e-07 Score=80.80 Aligned_cols=136 Identities=11% Similarity=-0.043 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 039695 267 VASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKP-NDVTFVGVLHACS 342 (605)
Q Consensus 267 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~ 342 (605)
..+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .| +..++..+..++.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 344567777778888888877777653 34567777777788888888888888887774 33 4556666666665
Q ss_pred ccCc--HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHH
Q 039695 343 HSGL--VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLS 409 (605)
Q Consensus 343 ~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~ 409 (605)
..|. .+.+...+.... ...|....+..+...+...|++++|...|++ +...|+ ......+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~l~~ 198 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS--TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC--HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 4443 333444444332 2223233334455566667888888888877 345566 555444443
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=5.2e-06 Score=79.55 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=84.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCC----
Q 039695 310 GLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD--EGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGR---- 382 (605)
Q Consensus 310 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~---- 382 (605)
+++++++++++++.+...+ |...|..-.-...+.|.++ ++.++++.+.+. .| |-..|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 4556666666666554222 4444444444444445544 566666666432 22 34444444444444444
Q ss_pred --HHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---CCCCchHHHHHHHHHhcCChhHHH
Q 039695 383 --LDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDI-AVEASNQLIESN---QQVANAYVTLSNTYALAGEWENVH 455 (605)
Q Consensus 383 --~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~ 455 (605)
++++++.++++. ..|+ +...|+-+...+...|+... ...+.+++.+++ |.++.++..++.+|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 666666665532 3333 26677777766766666433 444556555554 666667777777777777777777
Q ss_pred HHHHHHHh
Q 039695 456 SLRSEMKR 463 (605)
Q Consensus 456 ~~~~~m~~ 463 (605)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=1.9e-06 Score=82.70 Aligned_cols=163 Identities=10% Similarity=-0.055 Sum_probs=84.5
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HH
Q 039695 262 EFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFV-GV 337 (605)
Q Consensus 262 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~l 337 (605)
+.+......+...+.+.|++++|...|++..+ .+...+..+...|.+.|++++|...+++.... .|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 33344444455555555555555555555432 23344555555555555555555555555442 23322211 11
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc-hhhHHHHHHHHHHHc
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG-GPLLWGTLLSASRLH 414 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-~~~~~~~ll~~~~~~ 414 (605)
...+...+..++|...+++.... .|+ ...+..+...|...|++++|++.++++. ..|+. +...+..|+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 12233444555555555555422 343 5556666666666666666666665532 23331 144666677777777
Q ss_pred CChHHHHHHHHHHHh
Q 039695 415 GRVDIAVEASNQLIE 429 (605)
Q Consensus 415 g~~~~a~~~~~~~~~ 429 (605)
|+.+.|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 777777666666543
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.57 E-value=9.2e-07 Score=77.89 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH-Hh
Q 039695 64 TLNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA-CS 139 (605)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a-~~ 139 (605)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566778899999999999999864 467789999999999999999999999887643 343332222111 12
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC---hhhHHHHHHHHHHcCChhHHH
Q 039695 140 MLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC--RN---VVSWTSIIVAHAQNAQGHEAL 214 (605)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~A~ 214 (605)
..+....+...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+ ...|..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334678888888764 44678888899999999999999999988754 32 457888899999999999999
Q ss_pred HHHHHHHH
Q 039695 215 EMFREFNY 222 (605)
Q Consensus 215 ~~~~~m~~ 222 (605)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887643
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=4e-07 Score=75.24 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=89.6
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhH
Q 039695 327 IKPND-VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLL 403 (605)
Q Consensus 327 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~ 403 (605)
+.|+. ..+......+.+.|++++|.+.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++.. ..|+ +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHH
Confidence 34442 4556667778888888888888887753 3454 7788888888888999999988888743 3444 2778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039695 404 WGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444 (605)
Q Consensus 404 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (605)
|..+..++...|++++|++.|+++++++|++..++..|.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999998887777654
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=1.2e-06 Score=84.41 Aligned_cols=166 Identities=11% Similarity=-0.036 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCc--HH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN-D----VTFVGVLHACSHSGLVDEGIQHLDSMYRKYG--IIPD--AK 368 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 368 (605)
.+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...++....... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677788888888888887776422211 1 2233455566778899999999888753221 1122 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCc---hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CC
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ----VDPDG---GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ------VA 435 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 435 (605)
.|+.+...|...|++++|...+++.. ..|+. ...++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999887642 12221 1258889999999999999999999999876422 14
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 039695 436 NAYVTLSNTYALAGEWENV-HSLRSEMKR 463 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 463 (605)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777776654
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=2.1e-05 Score=75.29 Aligned_cols=225 Identities=10% Similarity=0.016 Sum_probs=156.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCCh-hHHHhHHHhhcccC--chhhHHHHHHHHHHhCCCCcHhHHHHHHHHH----Hhc--
Q 039695 208 AQGHEALEMFREFNYQSRDRPNQ-HMLASVINACASLG--RLVSGKVAHGVVVRSGCEFNDVVASALVDMY----AKC-- 278 (605)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-- 278 (605)
...++|++++..+.... |+. ..++.--.++...+ .++++...++.++... +.+..+++.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34456777777776643 433 33444444555555 7777777777777655 33344444333333 334
Q ss_pred -CCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------
Q 039695 279 -GSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGR--FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL------ 346 (605)
Q Consensus 279 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------ 346 (605)
++++++..+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 678888888888864 56667777777777888888 999999999987544 66677666556666665
Q ss_pred HHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCCchhhHHHHHHHHHHHcCChHH
Q 039695 347 VDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDE-AYKLAKSIQV-----DPDGGPLLWGTLLSASRLHGRVDI 419 (605)
Q Consensus 347 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~-----~p~~~~~~~~~ll~~~~~~g~~~~ 419 (605)
++++.+.++.++.. .| |...|+.+...+.+.|+..+ +.++..++.. ..+ +..+..+...+.+.|+.++
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS--SFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC--HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHccCCHHH
Confidence 88899998888643 55 48888888888888888554 5556666431 123 7789999999999999999
Q ss_pred HHHHHHHHHh-cCCCCCchHHHHH
Q 039695 420 AVEASNQLIE-SNQQVANAYVTLS 442 (605)
Q Consensus 420 a~~~~~~~~~-~~p~~~~~~~~l~ 442 (605)
|.++++.+.+ .+|.....|...+
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999997 7998776666543
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=3.4e-06 Score=77.62 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=124.8
Q ss_pred ChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc----hHH
Q 039695 229 NQHMLASVINACASLGRLVSGKVAHGVVVRSGCEF--NDVVASALVDMYAKCGSVNYSDKVFNRISN--PSVV----TYT 300 (605)
Q Consensus 229 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~ 300 (605)
+...+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566677889999999999999999864221 245778889999999999999999999863 4332 344
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 039695 301 SMIVGAAK------------------YGLGRFSLDLFNEMISRGIKPNDV-TFVGVLHACSHSGLVDEGIQHLDSMYRKY 361 (605)
Q Consensus 301 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 361 (605)
.+..++.+ .|+.++|+..|++.++. .|+.. ....... ...+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH----
Confidence 44555544 34566666666666553 23221 1111000 00000000
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCch--hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 362 GIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGG--PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 362 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
......+...|.+.|++++|+..|+++. ..|+.. ...+..+..++...|+.++|.+.++.+....|++..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0112346778889999999999998854 334421 257888999999999999999999999998887653
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=3.6e-06 Score=76.60 Aligned_cols=173 Identities=8% Similarity=-0.111 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCcchHHHHHHHHHHcC----ChhHHHHHHHHHH
Q 039695 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN-PSVVTYTSMIVGAAKYG----LGRFSLDLFNEMI 323 (605)
Q Consensus 249 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 323 (605)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .++..+..|...|.. + +.++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555544 556677777777778888888888887664 455667777777776 6 8889999999887
Q ss_pred HcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 039695 324 SRGIKPNDVTFVGVLHACSH----SGLVDEGIQHLDSMYRKYGIIPD---AKHYTCVVDMLGR----TGRLDEAYKLAKS 392 (605)
Q Consensus 324 ~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 392 (605)
+.| +...+..|...+.. .+++++|..+|+... ...|. ...+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 764 45666777777776 789999999999874 33443 7788888888888 7899999999988
Q ss_pred CCCC-CCchhhHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCCC
Q 039695 393 IQVD-PDGGPLLWGTLLSASRLH-G-----RVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 393 m~~~-p~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 433 (605)
.... ++ +..+..|...|... | +.++|...++++.+.+..
T Consensus 155 A~~~~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 6433 34 66777888887653 3 899999999999988653
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=9.3e-07 Score=73.27 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHH
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTL 407 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~l 407 (605)
+...+..+...+...|++++|...|+... ...| +...+..+...|...|++++|.+.+++.. ..|+ +...|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 34455566666666667777766666664 2334 35666667777777777777777776532 2232 26678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGE 450 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 450 (605)
..++...|++++|...++++++..|.+...+..+..+|.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888899999999999888888888888888888877654
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=8.2e-07 Score=76.94 Aligned_cols=128 Identities=10% Similarity=0.001 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
..+..+...+...|++++|...|+..... .| +...+..+...+...|++++|.+.+++.. ..|+ +...|..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34555666677778888888877777543 33 46777778888888888888888887643 2333 2678889999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCChhHHHHHHHHHHh
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN--TYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~~ 463 (605)
++...|++++|...++++++..|.+...+..+.. .+.+.|++++|.+.++....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999998887754444 48888999999999887654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=8.8e-07 Score=72.31 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
...+..+...+...|++++|.+.++.+.... +.+...+..+...+.+.|++++|...++++. ..|+ +..+|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 3455566666667777777777777664331 2235666777777777788888877776643 2232 2677888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAG 449 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 449 (605)
.+...|+++.|...++++++..|.++.++..+..++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888899999999999998888888888888777776544
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.1e-05 Score=73.15 Aligned_cols=91 Identities=12% Similarity=-0.033 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV 347 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 347 (605)
+..+...|...|++++|...|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777888888888887777777777777777788888888888887777642 23456666777777777777
Q ss_pred HHHHHHHHHHHH
Q 039695 348 DEGIQHLDSMYR 359 (605)
Q Consensus 348 ~~a~~~~~~m~~ 359 (605)
++|.+.|+...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777653
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=1e-06 Score=72.67 Aligned_cols=118 Identities=11% Similarity=0.009 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHH
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLL 408 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll 408 (605)
...+..+...+...|++++|...++..... .| +...+..+...+...|++++|.+.+++.. ..|+ +...|..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 445666666777777788887777777543 33 46677777888888888888888877643 2333 267888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 039695 409 SASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 452 (605)
..+...|+++.|...++++++..|.++.++..++.++.+.|+++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999998888888999888888753
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=5e-07 Score=88.93 Aligned_cols=95 Identities=8% Similarity=-0.067 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...|..+..+|.+.|++++|+..+++.. ..|+ +...|..+..++...|++++|+..|+++++++|++..++..+..+|
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888999999999999999998743 3443 3789999999999999999999999999999999999999999999
Q ss_pred HhcCChhHH-HHHHHHHH
Q 039695 446 ALAGEWENV-HSLRSEMK 462 (605)
Q Consensus 446 ~~~g~~~~a-~~~~~~m~ 462 (605)
.+.|++++| .+.++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998 44566664
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=1.8e-07 Score=89.63 Aligned_cols=188 Identities=10% Similarity=0.035 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHAC 341 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 341 (605)
...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34555566666677777777777766542 345566667777777777777777777776531 22455666677777
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCcH-HHHHHHHH---HHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCCh
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIPDA-KHYTCVVD---MLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRV 417 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~ 417 (605)
...|++++|...|....+. .|+. ..+...+. ...+...+.. .......++ ......+ ..+ ..|+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQE--SELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCC--CHHHHHH-HHH-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhh--HHHHHHH-HHH-HHHHH
Confidence 7777777777777766432 2210 00111111 1122212222 122222333 3333333 222 26888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 039695 418 DIAVEASNQLIESNQQVANAYVTLSNTYALA-GEWENVHSLRSEMKRT 464 (605)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 464 (605)
++|.+.++++++.+|++......+...+.+. +++++|.++|.+..+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998876667777777776 7789999999888653
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=4.6e-07 Score=79.86 Aligned_cols=121 Identities=7% Similarity=0.095 Sum_probs=89.2
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHH-HHHcCCh-
Q 039695 342 SHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSA-SRLHGRV- 417 (605)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~-~~~~g~~- 417 (605)
...|++++|...++..... .| +...+..+...|...|++++|...+++.. ..|+ +...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 3456677777777766533 33 46677777788888888888888877643 2333 26677778877 7788888
Q ss_pred -HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 418 -DIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 418 -~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
++|...++++++.+|.++.++..++.+|...|++++|...+++..+...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999998888889999999999999999999988877544
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.2e-06 Score=72.25 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...+..+...+.+.|++++|++.|++.. ..|+ +...|..+..++...|++++|+..++++++.+|+++.+|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4556677788888999999999988743 3443 2788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 039695 446 ALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~ 465 (605)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999887754
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=8.3e-07 Score=70.92 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQ--VANAYVTLSN 443 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 443 (605)
...+..+...+.+.|++++|...+++.. ..|+ +...|..+...+...|++++|...++++++..|. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556667778888888888888887643 2333 2678888999999999999999999999999999 8889999999
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCC
Q 039695 444 TYALA-GEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 444 ~y~~~-g~~~~a~~~~~~m~~~~~ 466 (605)
+|.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998887654
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.41 E-value=2.1e-05 Score=75.52 Aligned_cols=152 Identities=8% Similarity=-0.060 Sum_probs=67.3
Q ss_pred HHHHHcCCChhHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hhHHHH
Q 039695 69 INCYVRLKKTQVARQLFDEMLE-----PN----VVSYTSLMAGYINMGQPQIALLLFQKMLGNLVW-PNE----FTFATV 134 (605)
Q Consensus 69 i~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-pd~----~t~~~l 134 (605)
+..+.+.|++++|.+.+++... |+ ...+..+...+...|++++|+..|++....... ++. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444555555555555555421 11 011222333444445555555555555542211 111 134555
Q ss_pred HHHHhccCChHHHHHHHHHHHHh-----CCCCc-hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--------C-ChhhHHH
Q 039695 135 IKACSMLADLITGKQIHTHIETF-----GFQYN-LVVCSSLVDMYGKCNDVDGARRVFDLMGC--------R-NVVSWTS 199 (605)
Q Consensus 135 l~a~~~~~~~~~a~~~~~~~~~~-----g~~~~-~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--------~-~~~~~~~ 199 (605)
...+...|++++|...++.+++. +..+. ..++..+...|.+.|++++|...+++..+ . -..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555555555555555431 11111 12444555555555555555555544321 0 0234444
Q ss_pred HHHHHHHcCC-hhHHHHHHHHH
Q 039695 200 IIVAHAQNAQ-GHEALEMFREF 220 (605)
Q Consensus 200 li~~~~~~g~-~~~A~~~~~~m 220 (605)
+...|.+.|+ +++|++.|++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 4455555552 35555544443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=4.2e-06 Score=75.21 Aligned_cols=132 Identities=11% Similarity=-0.015 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC-C--ch
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKY---GIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ----VDP-D--GG 400 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~--~~ 400 (605)
.++..+...+...|++++|...+++..... +..|. ...+..+...|...|++++|.+.+++.. ..+ + ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344444444455555555555554443211 11121 3445556666666666666666655421 112 1 11
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCC----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQ--QVA----NAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
...+..+...+...|++++|...+++.++..+ .++ .++..++.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34567777778888888888888888776431 121 2456788888889999999888887755
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=9e-07 Score=72.48 Aligned_cols=95 Identities=11% Similarity=-0.027 Sum_probs=82.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALA 448 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 448 (605)
+..+...+.+.|++++|+..+++.. ..|+ +...|..+..++...|++++|+..++++++++|+++.++..++.+|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999998753 3453 3788999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 039695 449 GEWENVHSLRSEMKRTG 465 (605)
Q Consensus 449 g~~~~a~~~~~~m~~~~ 465 (605)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=8.3e-07 Score=83.19 Aligned_cols=136 Identities=11% Similarity=-0.044 Sum_probs=87.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHh
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD--AKHYTCVVDMLG 378 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~ 378 (605)
.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHH
Confidence 3455666777777777777766653 3444344444456677778888887776442 111 121 235666777788
Q ss_pred hcCCHHHHHHHHHhCCCC---CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 039695 379 RTGRLDEAYKLAKSIQVD---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~---p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (605)
+.|++++|++.|++.... |......+..+..++...|+.++|...|+++...+|+ ..++..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888775312 2212446667777788888888888888888888887 5444433
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.37 E-value=6.7e-05 Score=71.94 Aligned_cols=166 Identities=9% Similarity=-0.070 Sum_probs=121.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc-------chHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISN--PSV-------VTYTSMIVGAAKYGLGRFSLDLFNEMISRGI---KPN-- 330 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd-- 330 (605)
...+...+..+...|++++|.+.+....+ +.. ..+..+...+...|++++|+..|++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677888999999999998876542 111 1233455667788999999999999876321 122
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCCCc
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ------VDPDG 399 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~ 399 (605)
..+++.+...|...|++++|..+|++........|+ ..++..+...|.+.|++++|++.+++.. ..+..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888899999999999999999988632222222 2588899999999999999999988642 11111
Q ss_pred hhhHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 039695 400 GPLLWGTLLSASRLHGRVDIA-VEASNQLIES 430 (605)
Q Consensus 400 ~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 430 (605)
...+|..+..++...|++++| ...+++++++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 256788999999999999999 7778887754
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=2.9e-06 Score=70.87 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 039695 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSN 443 (605)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (605)
.+...+..+...+...|++++|...|++.. ..|+ +...|..+..++...|+++.|...++++++.+|+++.++..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 347778888888888999999998888743 3343 27789999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 039695 444 TYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 444 ~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999887654
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.34 E-value=7e-06 Score=76.91 Aligned_cols=185 Identities=13% Similarity=-0.017 Sum_probs=135.5
Q ss_pred hcCCHHHHHHHHhccCC--C-CcchHHHH-------HHHHHHcCChhHHHHHHHHHHHcCCCCCH---------------
Q 039695 277 KCGSVNYSDKVFNRISN--P-SVVTYTSM-------IVGAAKYGLGRFSLDLFNEMISRGIKPND--------------- 331 (605)
Q Consensus 277 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~--------------- 331 (605)
..++...|.+.|.++.. | ....|+.+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888764 3 33567766 4555555555666555554443 33321
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCch--hh
Q 039695 332 -------VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQVDPDGG--PL 402 (605)
Q Consensus 332 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~--~~ 402 (605)
.....+...+...|++++|.+.|+.+. ...|+......+...+.+.+++++|+..|+.....|++. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223345567788999999999999874 235654366677778999999999999998765445411 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIESN--QQ-VANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999998543 44 345778899999999999999999999987543
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=3.2e-07 Score=82.67 Aligned_cols=172 Identities=9% Similarity=-0.046 Sum_probs=99.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 039695 272 VDMYAKCGSVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVD 348 (605)
Q Consensus 272 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 348 (605)
+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.... .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344445555555555553322 12334555566666667777777777666652 1111000000 000
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 039695 349 EGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427 (605)
Q Consensus 349 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 427 (605)
.- ...+ ....+..+..+|.+.|++++|+..+++.. ..|+ +...|..+..++...|+++.|+..++++
T Consensus 81 ~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 81 DK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00 0000 13567778888889999999999888743 3343 2778999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 039695 428 IESNQQVANAYVTLSNTYALAGEWENVH-SLRSEMKRTG 465 (605)
Q Consensus 428 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~~~ 465 (605)
+++.|.++.++..+..++...++.+++. ..+..|..++
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999988888777 5555554443
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=2.1e-06 Score=74.47 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...+..+...+.+.|++++|++.|++.. ..|+ +...|..+..++...|++++|+..++++++++|.++.+|..++.+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455556666666666666666666532 2332 2556666667777777777777777777777777766777777777
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 039695 446 ALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~ 464 (605)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777666554
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=3.1e-06 Score=68.94 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...+..+...+.+.|++++|.+.++++. ..|+ +..+|..+...+...|++++|...++++++..|.++.++..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5678888999999999999999998854 2333 2778999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 039695 446 ALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~ 465 (605)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.32 E-value=1.6e-06 Score=73.99 Aligned_cols=100 Identities=7% Similarity=-0.115 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
..+..+...+.+.|++++|...|+.... +.|+ ...|..+..+|.+.|++++|++.|++.. ..|+ ++..|..+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 4566667777788888888888887763 3554 7778888888888888888888887743 3444 3678889999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
++...|++++|+..|++++++.|+.+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999988753
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=4e-06 Score=67.53 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...+..+...+...|++++|.+.+++.. ..|+ +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445556666666777777777666532 2232 1556667777777777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 039695 446 ALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~ 464 (605)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777766654
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=3e-06 Score=74.48 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=99.0
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH-HhhcCCH-
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDM-LGRTGRL- 383 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 383 (605)
...|++++|+..|++..... +.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888999998887752 336678888888999999999999999988643 34 47778888888 7788998
Q ss_pred -HHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 384 -DEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 384 -~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
++|...+++.. ..|+ +...|..+...+...|+++.|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999998753 3343 267888999999999999999999999999999886543
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=4.5e-06 Score=68.98 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (605)
+...+..+...+.+.|++++|.+.+++. ...|+ +...|..+...+...|++++|...++++++..|.++.++..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4778888999999999999999999884 34443 277899999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 039695 445 YALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 445 y~~~g~~~~a~~~~~~m~~~~ 465 (605)
|.+.|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987753
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.7e-06 Score=73.66 Aligned_cols=104 Identities=11% Similarity=-0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHH
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLL 408 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll 408 (605)
...+..+...+...|++++|...|+.... ..| +...|..+..+|.+.|++++|++.|++.. ..|+ ++..|..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 34566677778888999999988888764 345 47778888888999999999999988743 3443 267888999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 409 SASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
.++...|++++|+..|++++++.|+++...
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999877653
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.1e-05 Score=68.00 Aligned_cols=111 Identities=14% Similarity=-0.051 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHH
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWG 405 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~ 405 (605)
...+..+...+...|++++|...|+... ...|+ ...+..+...|...|++++|.+.+++.. ..|+ +...|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4445555555666666666666666554 33444 4556666666777777777777766532 2332 256777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 406 TLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 406 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
.+..++...|++++|...++++++..|++..++..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777788888888888888888888887766655554443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=7.8e-06 Score=65.73 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
..+..+...+...|++++|...++..... .| +...+..+...+.+.|++++|...+++.. ..|+ +...|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 44555666666677777777777766532 33 46667777777777788888887776642 2332 2667888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (605)
++...|++++|...++++++..|+++..+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88899999999999999999888887766666554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=3.8e-06 Score=69.38 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-------AY 438 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~ 438 (605)
...+..+...+.+.|++++|++.|++. ...|+ +...|..+..++...|++++|+..++++++++|++.. +|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345666788888889999998888774 34454 3778888999999999999999999999988876653 56
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
..++.+|...|++++|.+.+++..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788888899999999999988765
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=6e-06 Score=74.15 Aligned_cols=148 Identities=11% Similarity=-0.016 Sum_probs=91.1
Q ss_pred cCCChhHHHH---HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhccCChH
Q 039695 74 RLKKTQVARQ---LFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGN----LVWP-NEFTFATVIKACSMLADLI 145 (605)
Q Consensus 74 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~~~~~ 145 (605)
..|++++|.+ ++..-+.....+|+.+...+...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4678888888 655544445667778888888888888888888776551 1111 2335566666777777888
Q ss_pred HHHHHHHHHHHh----CCC--CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCCh
Q 039695 146 TGKQIHTHIETF----GFQ--YNLVVCSSLVDMYGKCNDVDGARRVFDLMGC-----RN----VVSWTSIIVAHAQNAQG 210 (605)
Q Consensus 146 ~a~~~~~~~~~~----g~~--~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~ 210 (605)
+|...++...+. +-. .....+..+...|...|++++|...|++... .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766654 101 1234566667777777777777777665431 11 12345556666667777
Q ss_pred hHHHHHHHHHH
Q 039695 211 HEALEMFREFN 221 (605)
Q Consensus 211 ~~A~~~~~~m~ 221 (605)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766666554
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=7.4e-06 Score=70.99 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHH
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTL 407 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~l 407 (605)
+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..+++.. ..|+ +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3456666777778888888888888877543 44 47788888888889999999998888743 3443 37789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
..++...|++++|+..++++++++|++...+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999999988665443
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=4.7e-06 Score=70.31 Aligned_cols=106 Identities=10% Similarity=-0.031 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|+..|++.. ..|+ ++..|..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34555666777888888888888877643 45 47777888888888899999988888743 3343 2678888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 039695 410 ASRLHGRVDIAVEASNQLIESNQQVANAYVTL 441 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (605)
++...|++++|...++++++..|+++......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999999999887655443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.8e-06 Score=67.55 Aligned_cols=110 Identities=12% Similarity=0.010 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHH
Q 039695 332 VTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLS 409 (605)
Q Consensus 332 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~ 409 (605)
..+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|++.+++.. ..|+ +...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34555556666777777777777766532 34 36677777777888888888888777642 3343 2668888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 039695 410 ASRLHGRVDIAVEASNQLIESN------QQVANAYVTLSNTY 445 (605)
Q Consensus 410 ~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 445 (605)
++...|++++|...++++++++ |.+..+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888999999999999998888 77666655555443
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=8.5e-06 Score=77.79 Aligned_cols=95 Identities=8% Similarity=-0.146 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 039695 128 EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC---RNVVSWTSIIVAH 204 (605)
Q Consensus 128 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 204 (605)
...+..+...+...|++++|...++.+++.. +.+...+..+..+|.+.|++++|...|++... .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455556666667777777777777777654 34667777777888888888888888877654 3456777777888
Q ss_pred HHcCChhHHHHHHHHHHHc
Q 039695 205 AQNAQGHEALEMFREFNYQ 223 (605)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~~ 223 (605)
.+.|++++|+..|.+....
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888777653
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.19 E-value=7.7e-06 Score=67.17 Aligned_cols=99 Identities=10% Similarity=0.079 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNT 444 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (605)
+...+..+...+...|++++|.+.+++.. ..|+ +...|..+...+...|++++|...++++++..|.++.++..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 36677888899999999999999998753 3343 277899999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 039695 445 YALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 445 y~~~g~~~~a~~~~~~m~~~~ 465 (605)
|...|++++|.+.+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999987754
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=2.7e-05 Score=67.15 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Q 039695 298 TYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDM 376 (605)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 376 (605)
.|..+...+...|++++|...|++..... +.+..++..+..++...|++++|...++..... .| +...+..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 34455556666666666666666666532 224556666666666777777777777766432 23 35666667777
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCchhhHHH--HHHHHHHHcCChHHHHHHHHHHHh
Q 039695 377 LGRTGRLDEAYKLAKSIQ-VDPDGGPLLWG--TLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
+.+.|++++|.+.+++.. ..|+ +...+. .+...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777776632 2232 133442 333335666777777777776654
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=0.00055 Score=66.31 Aligned_cols=174 Identities=11% Similarity=0.007 Sum_probs=98.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccC-chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-C
Q 039695 202 VAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG-RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKC-G 279 (605)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g 279 (605)
....+.+..++|++++.++.... +-+...++.--..+...+ .++++..+++.+++.. +.+..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33344555667888888777643 223333444444444555 4777777777777655 44555666555555554 5
Q ss_pred -CHHHHHHHHhccCCC---CcchHHHHHHHHHHcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-
Q 039695 280 -SVNYSDKVFNRISNP---SVVTYTSMIVGAAKYGLGR--------FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL- 346 (605)
Q Consensus 280 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~- 346 (605)
+.+++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.......+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 677777777777753 3345554444444444444 777777777775333 55566655555555554
Q ss_pred ------HHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCC
Q 039695 347 ------VDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGR 382 (605)
Q Consensus 347 ------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 382 (605)
++++.+.++.++. ..|+ ...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCC
Confidence 4566666665542 2343 5555555555554444
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.8e-05 Score=66.69 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCc--hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLS 442 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (605)
+...+..+...+.+.|++++|.+.|++. ...|+. ....|..+..++...|++++|+..++++++..|.++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4778888999999999999999999885 345551 1568888999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 039695 443 NTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 443 ~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
.+|...|++++|.+.+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999987754
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=1.4e-05 Score=65.71 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=72.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCCchh---hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 039695 372 CVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGP---LLWGTLLSASRLHGRVDIAVEASNQLIESNQQV---ANAYVTLSNT 444 (605)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 444 (605)
.+...+.+.|++++|.+.|++.. ..|+. . ..|..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34566777888888888877643 23331 2 477778888888899999999999999888888 6668888889
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 039695 445 YALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 445 y~~~g~~~~a~~~~~~m~~~~ 465 (605)
|.+.|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999988887654
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=1.9e-05 Score=68.24 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
...|..+..++...|+++.|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 46888899999999999999999999999999999999999999999999999999999887753
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=0.0019 Score=62.49 Aligned_cols=179 Identities=10% Similarity=-0.038 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039695 96 YTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEF-TFATVIKACSMLA-DLITGKQIHTHIETFGFQYNLVVCSSLVDMY 173 (605)
Q Consensus 96 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 173 (605)
++.+-....+.+..++|++++++++.. .|+.. .|+.--..+...+ .++++.++++.+++.. +.+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 333333444556667899999999884 34443 4565555555667 5889999999888765 55677777776666
Q ss_pred HhC-C-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChh--------HHHHHHHHHHHcCCCCCChhHHHhHHHhh
Q 039695 174 GKC-N-DVDGARRVFDLMGC---RNVVSWTSIIVAHAQNAQGH--------EALEMFREFNYQSRDRPNQHMLASVINAC 240 (605)
Q Consensus 174 ~~~-g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 240 (605)
.+. + +.++++++++.+.+ +|-.+|+--.-.+.+.|.++ ++++.+.++.+.. .-|...++.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 665 6 78889999988876 45566665555555555555 8888888888764 44666666666666
Q ss_pred cccCc-------hhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 039695 241 ASLGR-------LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGS 280 (605)
Q Consensus 241 ~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 280 (605)
.+.+. ++++.+....++... +.|...++-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66554 456666666666654 4566666666555555554
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=1.6e-05 Score=81.60 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...|..+..+|.+.|++++|+..+++.. ..|+ +...|..+..++...|++++|+..|+++++++|++..++..+..++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678889999999999999999998743 3443 3778999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHH-HHHHHHh
Q 039695 446 ALAGEWENVHS-LRSEMKR 463 (605)
Q Consensus 446 ~~~g~~~~a~~-~~~~m~~ 463 (605)
.+.|+++++.+ .++.|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 99999988774 4555543
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=2.7e-06 Score=69.07 Aligned_cols=84 Identities=14% Similarity=-0.022 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHhCCCC----CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 039695 380 TGRLDEAYKLAKSIQVD----PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVH 455 (605)
Q Consensus 380 ~g~~~~A~~~~~~m~~~----p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 455 (605)
.|++++|+..|++.... |+ +...|..+..++...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777664322 32 35577778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhC
Q 039695 456 SLRSEMKRT 464 (605)
Q Consensus 456 ~~~~~m~~~ 464 (605)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=1.6e-05 Score=82.08 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=56.7
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHH
Q 039695 306 AAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLD 384 (605)
Q Consensus 306 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 384 (605)
+.+.|++++|++.|++..+.. +-+..++..+..++...|++++|.+.+++..+ +.|+ ...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 344555555666655555531 11345555555556666666666666665542 2333 555555666666666666
Q ss_pred HHHHHHHhCC-CCCCchhhHHHHHHHH--HHHcCChHHHHHHHH
Q 039695 385 EAYKLAKSIQ-VDPDGGPLLWGTLLSA--SRLHGRVDIAVEASN 425 (605)
Q Consensus 385 ~A~~~~~~m~-~~p~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 425 (605)
+|.+.+++.. ..|+ +...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666655532 2222 13344444433 555566666666665
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=5e-05 Score=77.28 Aligned_cols=165 Identities=5% Similarity=-0.169 Sum_probs=116.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHh---cCCCCc-HHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISR-GIKPNDV----TFVGVLHACSHSGLVDEGIQHLDSMYRK---YGIIPD-AKH 369 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~ 369 (605)
+..+...|...|++++|.+++.++... +..++.. +.+.+-..+...|..+++..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 567788888899999999888877652 1122221 2223333445678899998888776432 233333 667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----C--CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----Cc
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ----V--DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN---QQV----AN 436 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~----~--~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 436 (605)
+..+...|...|++++|..++++.. . .......++..++..|...|+++.|...+++++... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 8889999999999999999987642 1 111124578889999999999999999999988653 222 13
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 437 AYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 437 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.+..++..|...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777888889999999988776654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=1.2e-05 Score=66.95 Aligned_cols=100 Identities=10% Similarity=-0.076 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHH
Q 039695 330 NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTL 407 (605)
Q Consensus 330 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~l 407 (605)
+...+..+...+...|++++|...|...... .|+ ...+..+..+|...|++++|...+++.. ..|+ +...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 4566677777777778888888877777533 343 6777778888888888888888877643 3343 26788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQ 433 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~ 433 (605)
..++...|+++.|+..++++++..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 89999999999999999999988776
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=1.5e-05 Score=67.31 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------c----hhhHHHHHHHHHHHcCChHHHHHHHHHHHhc-------C
Q 039695 371 TCVVDMLGRTGRLDEAYKLAKSI-QVDPD-------G----GPLLWGTLLSASRLHGRVDIAVEASNQLIES-------N 431 (605)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~ 431 (605)
......+.+.|++++|++.|++. ...|+ . +...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34455556666666666666552 12222 0 1338999999999999999999999999999 9
Q ss_pred CCCCchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 432 QQVANAY----VTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 432 p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
|++..+| ...+.++...|++++|...|++..+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999 99999999999999999999988764
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=6.6e-06 Score=84.98 Aligned_cols=119 Identities=11% Similarity=0.003 Sum_probs=99.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcC
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHG 415 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g 415 (605)
...+...|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.+++.. ..|+ +...|..+..++...|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34566789999999999998643 565 8899999999999999999999998743 4454 3778999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCChhHHHHHHHH
Q 039695 416 RVDIAVEASNQLIESNQQVANAYVTLSNT--YALAGEWENVHSLRSE 460 (605)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 460 (605)
++++|++.++++++..|++..++..+..+ +.+.|++++|.+.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999988888 8899999999999873
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=1.3e-05 Score=65.91 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CchH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV-------ANAY 438 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~ 438 (605)
...+..+...+...|++++|...+++.. ..|+ +...|..+...+...|+++.|...++++++..|.+ +.++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4566777888888899999988887743 2332 27788889999999999999999999999987766 6788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999987743
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=3.6e-05 Score=65.77 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----C--CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCc
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSIQ----V--DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ------QVAN 436 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~----~--~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 436 (605)
.+..+...+...|++++|.+.+++.. . .+.....++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44555555666666666666555421 0 1111134566777778888888888888888776431 1134
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 437 AYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 437 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
++..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888889999999999998887654
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=4.5e-05 Score=74.80 Aligned_cols=129 Identities=9% Similarity=-0.041 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPN--------------DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYG 362 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 362 (605)
..|..+...|.+.|++++|+..|++......... ...+..+..++...|++++|...++..++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--- 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 3455555566666666666666666665321111 36777788888888888888888888864
Q ss_pred CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 039695 363 IIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIA-VEASNQLIE 429 (605)
Q Consensus 363 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 429 (605)
+.| +...|..+..+|...|++++|+..|++.. ..|+ +...+..+..++...|+.++| ...++++++
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 47788888888889999999988887743 3443 266888888888888888888 445666553
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.97 E-value=2.5e-05 Score=61.97 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=58.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-chhhHHHHHHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPD-GGPLLWGTLLSAS 411 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~~~ll~~~ 411 (605)
+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|.+.+++.. ..|+ .+...|..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3444445555555555555555554321 1234555566666666666666666665532 1221 0256677777777
Q ss_pred HHc-CChHHHHHHHHHHHhcCCCCC
Q 039695 412 RLH-GRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 412 ~~~-g~~~~a~~~~~~~~~~~p~~~ 435 (605)
... |++++|.+.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 777777777777777777653
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=3.3e-05 Score=76.72 Aligned_cols=90 Identities=8% Similarity=-0.081 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...|..+..+|.+.|++++|++.+++. ...|+ +...|..+..++...|++++|+..+++++++.|++..++..+..++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 678888999999999999999999874 34454 3778999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHH
Q 039695 446 ALAGEWENVHSL 457 (605)
Q Consensus 446 ~~~g~~~~a~~~ 457 (605)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888777653
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=1.2e-05 Score=79.01 Aligned_cols=148 Identities=10% Similarity=-0.037 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 376 (605)
..|..+...+.+.|++++|+..|++.... .|+... +...+..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 44566666777778888888888877663 344332 223334443332211 1367788888
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCChhHH
Q 039695 377 LGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYA-LAGEWENV 454 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~~~a 454 (605)
|.+.|++++|+..+++.. ..|+ +...|..+..++...|++++|+..|+++++++|++..++..|..+.. ..+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988743 3443 27788899999999999999999999999999998888888887743 45667778
Q ss_pred HHHHHHHHhCC
Q 039695 455 HSLRSEMKRTG 465 (605)
Q Consensus 455 ~~~~~~m~~~~ 465 (605)
.+.+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888776544
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=0.0013 Score=63.36 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CCcchHHHHHHHHHHcCC-hhHHHHHH
Q 039695 246 LVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCG--SVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGL-GRFSLDLF 319 (605)
Q Consensus 246 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 319 (605)
++++..++..++... +.+..+|+.-.-.+.+.| .++++..+++.+.+ .|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 345555555544555555 35666666666653 444556555555556666 46777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhc----
Q 039695 320 NEMISRGIKPNDVTFVGVLHACSHS--------------GLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRT---- 380 (605)
Q Consensus 320 ~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---- 380 (605)
.++++..+. |...|+.......+. +.++++.+++...+. ..|+ ...|+-+--.+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 777765332 444444433333222 345556666655542 2343 45554444444433
Q ss_pred -------CCHHHHHHHHHhCC-CCCCchhhHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 039695 381 -------GRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSAS-----RLHGRVDIAVEASNQLIESNQQVANAYVTL 441 (605)
Q Consensus 381 -------g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (605)
+.++++++.++++. ..|+ . .|..+..+. ...|..++....+.++++++|...+-|.-+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd--~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE--N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT--C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc--c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 33555555555432 3344 1 232211111 123445555666666666666554444433
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=7e-05 Score=63.88 Aligned_cols=133 Identities=11% Similarity=0.008 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIK-PN----DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKH 369 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 369 (605)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444455555555555555554431000 11 134555666666677777777766665432211111 445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----C--CCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039695 370 YTCVVDMLGRTGRLDEAYKLAKSIQ----V--DPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN 431 (605)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~----~--~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 431 (605)
+..+...+...|++++|.+.+++.. . .+.....++..+...+...|++++|.+.+++.++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6667777777888888877776532 1 111113467778888888999999999988887654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.90 E-value=2.7e-05 Score=63.52 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=60.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHH
Q 039695 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRL 413 (605)
Q Consensus 336 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~ 413 (605)
.+...+...|++++|...|+..++ ..| +...+..+..++.+.|++++|+..+++.. ..|+ +...|..+..++..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344455666777777777766653 244 36666667777777777777777776632 3443 25677777778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCC
Q 039695 414 HGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
.|++++|+..++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777653
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.89 E-value=2.6e-05 Score=65.88 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCCchhhHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 369 HYTCVVDMLGRTGRLDEAYKLAKSI-QV-------DPDGGPLLW----GTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.|..+..++.+.|++++|+..+++. .. .|+ +...| .....++...|++++|+..|++++++.|.+..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6666666777777777776666552 23 665 46688 99999999999999999999999999998876
Q ss_pred hHH
Q 039695 437 AYV 439 (605)
Q Consensus 437 ~~~ 439 (605)
.+.
T Consensus 138 ~~~ 140 (159)
T 2hr2_A 138 ETP 140 (159)
T ss_dssp CCT
T ss_pred HHH
Confidence 544
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=1.4e-05 Score=64.67 Aligned_cols=93 Identities=15% Similarity=0.046 Sum_probs=64.0
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHH
Q 039695 344 SGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAV 421 (605)
Q Consensus 344 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~ 421 (605)
.|++++|...|++.++...-.|+ ...+..+..+|.+.|++++|++.+++.. ..|+ ++..+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777766421000243 5667777788888888888888887743 3444 2678888888889999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 039695 422 EASNQLIESNQQVANA 437 (605)
Q Consensus 422 ~~~~~~~~~~p~~~~~ 437 (605)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999888887654
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=9.8e-05 Score=75.77 Aligned_cols=126 Identities=9% Similarity=0.013 Sum_probs=97.8
Q ss_pred HHhccCcHHHHHHHHHHHHHhcC--C---CCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCCchhhHH
Q 039695 340 ACSHSGLVDEGIQHLDSMYRKYG--I---IPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ---------VDPDGGPLLW 404 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ 404 (605)
.+...|++++|..++++...... + .|+ ..+++.|..+|...|++++|..++++.. ..|+ ...++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHH
Confidence 45577888888888877654432 1 233 6778889999999999999988877632 2233 24579
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 405 GTLLSASRLHGRVDIAVEASNQLIE-----SNQQVAN---AYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 405 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+.|...|...|++++|+.+++++++ ++|+++. ....|..++...|++++|..++.+++++-.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999986 4677765 456788889999999999999999987543
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.87 E-value=3.7e-05 Score=63.00 Aligned_cols=109 Identities=8% Similarity=0.023 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---Cch---hhHHHH
Q 039695 334 FVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDP---DGG---PLLWGT 406 (605)
Q Consensus 334 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~---~~~~~~ 406 (605)
+..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|...+++.. ..| +.. ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444444455555555555555543221 1234455555555555666666665555432 111 100 346677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 407 LLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 407 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
+..++...|+++.|...++++++..| ++.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77778888888888888888888777 455555554443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.87 E-value=0.0002 Score=58.59 Aligned_cols=102 Identities=14% Similarity=-0.035 Sum_probs=61.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCc--hhhHHHHHHHHHHH
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDG--GPLLWGTLLSASRL 413 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~--~~~~~~~ll~~~~~ 413 (605)
...+...|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|...+++.. ..|+. .+..+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33444556666666666655433211111 1355556666677777777777766532 22331 13456777778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHH
Q 039695 414 HGRVDIAVEASNQLIESNQQVANAYV 439 (605)
Q Consensus 414 ~g~~~~a~~~~~~~~~~~p~~~~~~~ 439 (605)
.|+++.|...++++++..|+++.+..
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888887654433
No 186
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.85 E-value=8.5e-05 Score=66.45 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCch---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGG---------------PLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
...+..+...+.+.|++++|.+.|++.. ..|+.. ...|..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4445566677777788888887777632 222211 268889999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 431 NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 431 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999987753
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=3.8e-05 Score=66.25 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-chHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA-NAYVTLSN 443 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~ 443 (605)
...|..+..+|.+.|++++|+..+++.. ..|+ +...|..+..++...|++++|...++++++++|+++ .+...+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5678888899999999999999988743 3444 377899999999999999999999999999999987 33444433
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.2e-05 Score=61.53 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------Cch
Q 039695 365 PDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQV------ANA 437 (605)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 437 (605)
++...+..+...+.+.|++++|++.+++.. ..|+ ++..|..+..++...|++++|+..++++++..|++ ..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 345667778888889999999999888743 3443 27789999999999999999999999999999998 667
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLRS 459 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~ 459 (605)
+..++.++...|++++|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 7778888888777776655443
No 189
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00027 Score=57.94 Aligned_cols=58 Identities=10% Similarity=-0.075 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 299 YTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|++.++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444555555555555555544421 112334444444455555555555544444
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=5.6e-05 Score=74.17 Aligned_cols=152 Identities=11% Similarity=-0.010 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 039695 265 DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHS 344 (605)
Q Consensus 265 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 344 (605)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998653221111 1222333333332221 13677788888999
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHH-HHHcCChHHHH
Q 039695 345 GLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSA-SRLHGRVDIAV 421 (605)
Q Consensus 345 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~-~~~~g~~~~a~ 421 (605)
|++++|...++..++ +.| +...|..+..+|...|++++|...|++.. ..|+ +...+..|... ....+..+.+.
T Consensus 244 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998864 345 47888999999999999999999998864 4454 25566666655 34556778888
Q ss_pred HHHHHHHhcCCCCC
Q 039695 422 EASNQLIESNQQVA 435 (605)
Q Consensus 422 ~~~~~~~~~~p~~~ 435 (605)
..|+++++..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999888765
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.77 E-value=0.00011 Score=57.29 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
+..|..+..++...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7789999999999999999999999999999999999999999999999999999999988764
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00045 Score=70.15 Aligned_cols=159 Identities=7% Similarity=-0.030 Sum_probs=116.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcH
Q 039695 304 VGAAKYGLGRFSLDLFNEMISRGIKPN----------------DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA 367 (605)
Q Consensus 304 ~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 367 (605)
..+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+++..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345667888888888888776422211 1246778899999999999999999886544433332
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Q 039695 368 ----KHYTCVVDMLGRTGRLDEAYKLAKSIQ-------VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESN----- 431 (605)
Q Consensus 368 ----~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 431 (605)
.+.+.+...+...|.+++|.++++... ..+. ...++..|...+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL-KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH-HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 233444455566789999998876532 1221 24578889999999999999999999988631
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 432 -QQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 432 -p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
|....+|..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22234788999999999999999999988764
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.77 E-value=0.0011 Score=63.84 Aligned_cols=181 Identities=12% Similarity=0.008 Sum_probs=126.4
Q ss_pred HHHHHHHHhccCC---CCcchHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 039695 281 VNYSDKVFNRISN---PSVVTYTSMIVGAAKYGL--GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGL-VDEGIQHL 354 (605)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~ 354 (605)
++++..+++.+.. .+..+|+.-.-.+.+.|+ +++++.+++++.+...+ |...|+.---.....|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4667777776653 566778877777777774 78999999999986433 66677666666667777 68999999
Q ss_pred HHHHHhcCCCC-cHHHHHHHHHHHhhc--------------CCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHc----
Q 039695 355 DSMYRKYGIIP-DAKHYTCVVDMLGRT--------------GRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLH---- 414 (605)
Q Consensus 355 ~~m~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~---- 414 (605)
+.+++. .| |...|+....++.+. +.++++++.+.+.. ..|+ +...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 998754 34 466676666665554 56888999887743 4454 377787555555444
Q ss_pred -------CChHHHHHHHHHHHhcCCCCCchHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 039695 415 -------GRVDIAVEASNQLIESNQQVANAYVTLSNT---YALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 415 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+.++++++.++++++..|++.-.+..++.. ....|..+++...+.++.+.++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 457899999999999999884333333222 2245777888888888877544
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=9.7e-05 Score=56.12 Aligned_cols=82 Identities=24% Similarity=0.285 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTY 445 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 445 (605)
...+..+...+.+.|++++|...+++.. ..|+ +...|..+..++...|++++|...++++++.+|.++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5566777778888888888888887642 2333 2678888888999999999999999999999998888888888887
Q ss_pred HhcC
Q 039695 446 ALAG 449 (605)
Q Consensus 446 ~~~g 449 (605)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=6.5e-05 Score=60.37 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=65.6
Q ss_pred HHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 385 EAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 385 ~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
+|++.+++. ...|+ +...|..+...+...|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555543 33443 3778899999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 039695 464 T 464 (605)
Q Consensus 464 ~ 464 (605)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.0008 Score=70.69 Aligned_cols=169 Identities=7% Similarity=-0.082 Sum_probs=131.3
Q ss_pred CHHHHHHHHhccCC---CCcchHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-
Q 039695 280 SVNYSDKVFNRISN---PSVVTYTSMIVGAAKYGL----------GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG- 345 (605)
Q Consensus 280 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g- 345 (605)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +..+|..-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34677888877764 334567666566666666 89999999999986433 5667777777777888
Q ss_pred -cHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhcC-CHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHc-------
Q 039695 346 -LVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLGRTG-RLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLH------- 414 (605)
Q Consensus 346 -~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~------- 414 (605)
+++++.+.++.+.+. .| +...|+.-..++.+.| .++++++.++++. ..|+ +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 679999999999753 45 4777888888888888 8999999998865 3443 477888888777663
Q ss_pred -------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 039695 415 -------GRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWEN 453 (605)
Q Consensus 415 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 453 (605)
+.++++.+.+.++++.+|++..+|..+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988655
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.71 E-value=0.0002 Score=71.05 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999999999999999999999999999999999999987754
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00026 Score=72.57 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCch--------------hhHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039695 367 AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGG--------------PLLWGTLLSASRLHGRVDIAVEASNQLIESN 431 (605)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 431 (605)
...+..+...|.+.|++++|+..|++.. ..|+.. ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3445556666666666666666665532 223311 4688999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 432 QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 432 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
|+++.+|..++.+|...|++++|...|++..+...
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987643
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=4.1e-05 Score=64.54 Aligned_cols=88 Identities=8% Similarity=0.002 Sum_probs=68.2
Q ss_pred hhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039695 378 GRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGR----------VDIAVEASNQLIESNQQVANAYVTLSNTYA 446 (605)
Q Consensus 378 ~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 446 (605)
.|.+++++|.+.++... ..|+ +...|..+..++...++ +++|+..|+++++++|++..+|..++++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556677777766532 3443 26677777777776665 469999999999999999999999999999
Q ss_pred hcC-----------ChhHHHHHHHHHHhCCC
Q 039695 447 LAG-----------EWENVHSLRSEMKRTGI 466 (605)
Q Consensus 447 ~~g-----------~~~~a~~~~~~m~~~~~ 466 (605)
..| ++++|.+.|++..+...
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 875 89999999999988654
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00067 Score=51.88 Aligned_cols=67 Identities=6% Similarity=-0.066 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 401 PLLWGTLLSASRLHGR---VDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
+..|..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+....
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7788888888876665 799999999999999999999999999999999999999999999887653
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.00062 Score=51.46 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 400 GPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 400 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
....|..+...+...|++++|+..++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 366888899999999999999999999999999999999999999999999999999999987754
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00064 Score=53.66 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
...|..+...+...|++++|+..++++++..|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 678889999999999999999999999999999999999999999999999999999999887543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.0025 Score=52.97 Aligned_cols=90 Identities=6% Similarity=-0.147 Sum_probs=51.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-
Q 039695 373 VVDMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQQVANAYVTLSNTYAL- 447 (605)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~- 447 (605)
|..+|...+..++|.+.|++.....+ +..+..|...|.. .++.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNS--GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 44444444445555555554332233 5555555555555 55666666666666655 234566666666666
Q ss_pred ---cCChhHHHHHHHHHHhCCC
Q 039695 448 ---AGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 448 ---~g~~~~a~~~~~~m~~~~~ 466 (605)
.+++++|.+.+++..+.|.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHHHCCC
Confidence 6667777777766666554
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.33 E-value=0.00079 Score=69.05 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHhhcCCHHHHHHHHHhCC------CCCCc--hhhHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hH
Q 039695 375 DMLGRTGRLDEAYKLAKSIQ------VDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIE-----SNQQVAN---AY 438 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~------~~p~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~ 438 (605)
..+...|++++|+.++++.. ..|+. ...+++.|..+|...|++++|+.+++++++ ++|+++. ++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999999887632 12221 245899999999999999999999999986 4566544 78
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEeeeeccccCccchHHHHHHHHHHHHHH
Q 039695 439 VTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKM 508 (605)
Q Consensus 439 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m 508 (605)
+.|+.+|...|++++|..++++..+--.. .-...||...++...+.+...++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988652110 11236888887776665555444
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.29 E-value=0.00016 Score=60.96 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCCCchhhHHHHHHHHHHH
Q 039695 346 LVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGR----------LDEAYKLAKSI-QVDPDGGPLLWGTLLSASRL 413 (605)
Q Consensus 346 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~ 413 (605)
.+++|.+.++...+ +.|+ ...|..+..++...++ +++|+..|++. ...|+ ....|..+..+|..
T Consensus 17 ~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 34444444444432 2332 4444444444444433 34666666652 34444 25567777777766
Q ss_pred c-----------CChHHHHHHHHHHHhcCCCCC
Q 039695 414 H-----------GRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 414 ~-----------g~~~~a~~~~~~~~~~~p~~~ 435 (605)
. |++++|++.|+++++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 589999999999999999875
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.0018 Score=65.25 Aligned_cols=118 Identities=8% Similarity=0.021 Sum_probs=87.3
Q ss_pred HHHHhhcCCHHHHHHHHHhCC------CCCCc--hhhHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---h
Q 039695 374 VDMLGRTGRLDEAYKLAKSIQ------VDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIE-----SNQQVAN---A 437 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~------~~p~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 437 (605)
+..+.+.|++++|++++++.. ..|+. ...+++.|..+|...|++++|+.+++++++ ++|+++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788999988887631 12221 234788999999999999999999999885 3455544 7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEeeeeccccCccchHHHHHHHHHHHHHHH
Q 039695 438 YVTLSNTYALAGEWENVHSLRSEMKRTGIHKEPGCSWVEIRDQTYAFYAGNALFERGSEVLSLLRELERKMK 509 (605)
Q Consensus 438 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 509 (605)
+..|+.+|...|++++|..++++..+--. ..-...||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998865211 0112478999888888877776664
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.16 E-value=0.0011 Score=52.82 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 039695 350 GIQHLDSMYRKYGIIPD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQL 427 (605)
Q Consensus 350 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 427 (605)
+...|+... ...|+ ...+..+...|.+.|++++|+..+++.. ..|+ +...|..+..++...|++++|...++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555554 34453 6677777888888888888888877643 3343 2667888888888888999999888888
Q ss_pred HhcCCCC
Q 039695 428 IESNQQV 434 (605)
Q Consensus 428 ~~~~p~~ 434 (605)
++..|..
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8877643
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.0039 Score=51.75 Aligned_cols=113 Identities=8% Similarity=-0.126 Sum_probs=91.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh----cCCHH
Q 039695 309 YGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGR----TGRLD 384 (605)
Q Consensus 309 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 384 (605)
.++.++|++.|++..+.| .|+.. +-..|...+.+++|.++|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999887 33433 666677778889999999988542 356777888888887 88999
Q ss_pred HHHHHHHhCCCCCCchhhHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 039695 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRL----HGRVDIAVEASNQLIESNQ 432 (605)
Q Consensus 385 ~A~~~~~~m~~~p~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 432 (605)
+|.++|++.....+ +..+..|...|.. .++.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998654455 8888899999988 8999999999999998864
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.07 E-value=0.0059 Score=64.09 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=117.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHH
Q 039695 310 GLGRFSLDLFNEMISRGIKPND-VTFVGVLHACSHSGL----------VDEGIQHLDSMYRKYGIIPD-AKHYTCVVDML 377 (605)
Q Consensus 310 g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 377 (605)
...++|++.++++... .|+. ..|+.--.++...|+ ++++.++++.+.+. .|. ...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3456889999999984 5554 445554445555555 89999999999754 454 77888888888
Q ss_pred hhcC--CHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-----
Q 039695 378 GRTG--RLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHG-RVDIAVEASNQLIESNQQVANAYVTLSNTYALA----- 448 (605)
Q Consensus 378 ~~~g--~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----- 448 (605)
.+.| ++++|++.++++. ..|. +...|+.-..+....| ..+++.+.++++++.+|.+..+|.....++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 8999 7799999999864 3332 3789999888888889 899999999999999999999999999888874
Q ss_pred ---------CChhHHHHHHHHHHhCC
Q 039695 449 ---------GEWENVHSLRSEMKRTG 465 (605)
Q Consensus 449 ---------g~~~~a~~~~~~m~~~~ 465 (605)
++++++.+.+++.....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 55788888877776543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.06 E-value=0.00096 Score=67.23 Aligned_cols=85 Identities=8% Similarity=-0.012 Sum_probs=65.0
Q ss_pred hcCCHHHHHHHHHhCC------CCCCc--hhhHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hHHHHH
Q 039695 379 RTGRLDEAYKLAKSIQ------VDPDG--GPLLWGTLLSASRLHGRVDIAVEASNQLIE-----SNQQVAN---AYVTLS 442 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~------~~p~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 442 (605)
..|++++|+.++++.. ..|+. ...+++.|..+|...|++++|+.+++++++ ++|+++. .|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776521 12221 234788999999999999999999999885 3555544 788999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 039695 443 NTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 443 ~~y~~~g~~~~a~~~~~~m~~ 463 (605)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0029 Score=48.69 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=29.5
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCCchhh-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 375 DMLGRTGRLDEAYKLAKSIQ-VDPDGGPL-LWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~-~~p~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
..+.+.|++++|.+.+++.. ..|+ +.. .|..+..++...|++++|+..++++++.+|+++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 34444555555555554422 2222 133 44555555555555555555555555555554443
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.0053 Score=47.16 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCc-HH-HHHHHHHHHhhcCCHHHHHHHHHh
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYGIIPD-AK-HYTCVVDMLGRTGRLDEAYKLAKS 392 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~ 392 (605)
...+...|++++|...++...+. .|+ .. .+..+..+|.+.|++++|.+.|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566666666666666432 343 44 566666666666666666666665
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.63 E-value=0.013 Score=56.71 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
+.+|.++...+...|+++.|...++++++++|. ...|..++.++.-.|++++|.+.+++....+.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 778888877777789999999999999999864 56778889999999999999999988877654
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0082 Score=60.42 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=70.9
Q ss_pred ccCcHHHHHHHHHHHHHhcC--CC---Cc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCCchhhHHHHH
Q 039695 343 HSGLVDEGIQHLDSMYRKYG--II---PD-AKHYTCVVDMLGRTGRLDEAYKLAKSIQ---------VDPDGGPLLWGTL 407 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~~~l 407 (605)
+.|++++|..++++...... +. |+ ..+++.|..+|...|++++|+.++++.. ..|+ ...+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHH
Confidence 45788888888877654321 22 33 6778889999999999999999887642 2333 24579999
Q ss_pred HHHHHHcCChHHHHHHHHHHHh-----cCCCCCch
Q 039695 408 LSASRLHGRVDIAVEASNQLIE-----SNQQVANA 437 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 437 (605)
...|...|++++|+.+++++++ ++|+++.+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999986 46777643
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.61 E-value=0.06 Score=52.06 Aligned_cols=139 Identities=12% Similarity=-0.005 Sum_probs=92.7
Q ss_pred CCCcchHHHHHHHHHH--cCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC----cHHHHHHHHHHHH
Q 039695 293 NPSVVTYTSMIVGAAK--YGL---GRFSLDLFNEMISRGIKPN-DVTFVGVLHACSH----SG----LVDEGIQHLDSMY 358 (605)
Q Consensus 293 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~----~g----~~~~a~~~~~~m~ 358 (605)
..+...|...+.+... .++ ..+|..+|++.++. .|+ ...+..+.-++.. .+ ........+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3567788887766543 333 47899999999884 555 3344433333321 00 1111111222211
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 359 RKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
.......+...|..+...+...|++++|...+++.. ..|+ ...|..+...+...|+.++|.+.+++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 111224458888888887888899999999999854 4566 77888889999999999999999999999999764
No 216
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.59 E-value=0.93 Score=47.55 Aligned_cols=254 Identities=12% Similarity=0.042 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccC
Q 039695 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLG 244 (605)
Q Consensus 165 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 244 (605)
.-+.-+..+++.+++......+.. +..+...--....+....|+..+|......+-..|.. .......++....+.|
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHCC
Confidence 334445566667777777776555 3223332233455566667766676666666555522 2333444444444333
Q ss_pred chhh--HHHHHHHHHHhC-----------CCCc-HhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcch---HHHHHHHHH
Q 039695 245 RLVS--GKVAHGVVVRSG-----------CEFN-DVVASALVDMYAKCGSVNYSDKVFNRISNPSVVT---YTSMIVGAA 307 (605)
Q Consensus 245 ~~~~--a~~~~~~~~~~g-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~ 307 (605)
.+.. ..+-+..+...| ++++ ......++..+.+-..+ ....... .++... +..-+.-++
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 3221 111111111111 1111 11223333333222222 1121111 111111 111122233
Q ss_pred HcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 039695 308 KYGLGRFSLDLFNEMISRG-IKPNDV--TFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLD 384 (605)
Q Consensus 308 ~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 384 (605)
+ .+.+.|..+|......+ ..+... ....+.......+...++...+...... .++.....-.+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 3 37788888888876543 222221 2222333334445345555666654321 233323333444445779999
Q ss_pred HHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039695 385 EAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIE 429 (605)
Q Consensus 385 ~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 429 (605)
.|...|+.|+..+.......-=+..+....|+.++|..+|+++.+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998754321122112244566778999999999988875
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.59 E-value=0.0072 Score=46.72 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 297 VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
..|..+...|.+.|++++|+..|++..+... .+...|..+..++...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555555555554321 12334445555555555555555555544
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.0086 Score=49.80 Aligned_cols=64 Identities=8% Similarity=-0.057 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 401 PLLWGTLLSASRLHG---RVDIAVEASNQLIESN-Q-QVANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
..+.-.+..++.+.+ ++++|+.+++++++.+ | .+...+..|+-+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 555555666666655 4557777777777666 5 34556667777777777777777777777653
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.49 E-value=0.00013 Score=71.91 Aligned_cols=239 Identities=10% Similarity=0.009 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSM 140 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 140 (605)
.+.+|..|-.++.+.|++.+|++-|- ...|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45678888888888888888877663 446777888999999999999988888765555433 33444578888998
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC------------------------CChhh
Q 039695 141 LADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGC------------------------RNVVS 196 (605)
Q Consensus 141 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~ 196 (605)
.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766554432 46666667777888888888888888877632 46789
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 039695 197 WTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYA 276 (605)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 276 (605)
|-.+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++-..+++.-+.. -.....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 9999999999998887755444433 3333 3446777788889888888887766532 2456778888888888
Q ss_pred hcCCHHHHHHHHhccC----C-------CCcchHHHHHHHHHHcCChhHHHHH
Q 039695 277 KCGSVNYSDKVFNRIS----N-------PSVVTYTSMIVGAAKYGLGRFSLDL 318 (605)
Q Consensus 277 ~~g~~~~A~~~~~~~~----~-------~~~~~~~~li~~~~~~g~~~~A~~l 318 (605)
|-. .++..+.++.-. - .....|.-++-.|.+..+++.|...
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 753 334433333222 1 3445788888888888888866543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.45 E-value=0.013 Score=59.04 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=72.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcC--CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCCchhh
Q 039695 338 LHACSHSGLVDEGIQHLDSMYRKYG--IIPD----AKHYTCVVDMLGRTGRLDEAYKLAKSIQ---------VDPDGGPL 402 (605)
Q Consensus 338 l~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~ 402 (605)
+..+...|++++|..++++...... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV-RGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH-HHH
Confidence 4445567788888888877754321 2222 5678888888888999999888877632 2233 244
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCchH
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIE-----SNQQVANAY 438 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 438 (605)
+++.|...|...|++++|+.+++++++ ++|+++.+-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 789999999999999999999999986 478776543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.18 Score=55.47 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=84.4
Q ss_pred HhcCChhHHHH-HHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 039695 104 INMGQPQIALL-LFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGA 182 (605)
Q Consensus 104 ~~~g~~~~a~~-~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 182 (605)
...+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. . ..-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence 44666666655 3311 1 1122235566666667777776655421 1 1113345667888888
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCC
Q 039695 183 RRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262 (605)
Q Consensus 183 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 262 (605)
.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-......|.
T Consensus 672 ~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 672 RDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 88877764 456788888888888888888888887642 22333333335555554444444444331
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 039695 263 FNDVVASALVDMYAKCGSVNYSDKVFN 289 (605)
Q Consensus 263 ~~~~~~~~li~~y~~~g~~~~A~~~~~ 289 (605)
++.-...|.++|++++|.+++.
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHH
Confidence 1223334555666666655543
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.02 E-value=0.45 Score=38.11 Aligned_cols=139 Identities=15% Similarity=0.117 Sum_probs=96.0
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 039695 308 KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAY 387 (605)
Q Consensus 308 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 387 (605)
-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+ | ...||++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHHH
Confidence 356677777777776653 133344444443334444455555555552222 2 23567777777
Q ss_pred HHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 388 KLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 388 ~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
.-+-.+. .+ ..-....++.....|.-+.-.++...++..+|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 82 ~C~~~~n--~~--se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TL--NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CC--CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--ch--HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7766654 23 5566777888889999999999999987777888899999999999999999999999999999984
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.62 E-value=0.12 Score=57.00 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=65.1
Q ss_pred HHhcCCHHHHHH-HHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 039695 275 YAKCGSVNYSDK-VFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQH 353 (605)
Q Consensus 275 y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 353 (605)
....+++++|.+ ++..++ +......++..+.+.|..++|+++.+. |+ .-| ......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~f----~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QKF----ELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HHH----HHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hhe----ehhhhcCCHHHHHHH
Confidence 345688888887 654443 111226667777788888888876532 11 112 223456888888776
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 039695 354 LDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394 (605)
Q Consensus 354 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (605)
.+.+ .+...|..+.+++.+.|+++.|.+.|.++.
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 5432 456788888888888888888888888765
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.55 E-value=0.066 Score=40.59 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=56.9
Q ss_pred CcHHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 039695 365 PDAKHYTCVVDMLGRTGR---LDEAYKLAKSI-QVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVT 440 (605)
Q Consensus 365 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (605)
++...+..+..++...+. .++|..++++. ...|+ ++..+..+...+.+.|++++|+..|+++++.+|+ ......
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 456777777777765444 68888888774 34554 3677888888999999999999999999999988 333444
Q ss_pred HHHH
Q 039695 441 LSNT 444 (605)
Q Consensus 441 l~~~ 444 (605)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.51 E-value=0.066 Score=41.54 Aligned_cols=76 Identities=13% Similarity=0.001 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CC---CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQ----VD---PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAY 438 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~---p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 438 (605)
+..-+..|...+.+.|+++.|...++... .. ......++..|..++.+.|+++.|...+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566777777777777777776532 01 112366889999999999999999999999999999987654
Q ss_pred HHH
Q 039695 439 VTL 441 (605)
Q Consensus 439 ~~l 441 (605)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.34 E-value=0.067 Score=44.42 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CC-CCchhhHHHHHHHHHHHcCChHHHH
Q 039695 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG---RLDEAYKLAKSIQ-VD-PDGGPLLWGTLLSASRLHGRVDIAV 421 (605)
Q Consensus 347 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p~~~~~~~~~ll~~~~~~g~~~~a~ 421 (605)
+..+++-|.+.... + .++..+...+..++.+.+ +.++++.++++.- .. |+.....+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444555544222 2 256666666777777776 5557777776643 22 3223556777888889999999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 039695 422 EASNQLIESNQQVANAY 438 (605)
Q Consensus 422 ~~~~~~~~~~p~~~~~~ 438 (605)
+.++.+++.+|++..+.
T Consensus 92 ~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCCCHHHH
Confidence 99999999999886543
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.25 E-value=0.059 Score=49.94 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=69.1
Q ss_pred HHHHHHHHHhC-CCCCCc-hhhHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CChhH
Q 039695 383 LDEAYKLAKSI-QVDPDG-GPLLWGTLLSASRL-----HGRVDIAVEASNQLIESNQQV-ANAYVTLSNTYALA-GEWEN 453 (605)
Q Consensus 383 ~~~A~~~~~~m-~~~p~~-~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 453 (605)
..+|...+++. ...|+- +...|..|...|.+ -|+.+.|++.|+++++++|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555542 234441 24578888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 039695 454 VHSLRSEMKRTGIHKEPG 471 (605)
Q Consensus 454 a~~~~~~m~~~~~~~~~~ 471 (605)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877764454
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.98 E-value=1.3 Score=37.61 Aligned_cols=130 Identities=11% Similarity=0.120 Sum_probs=92.4
Q ss_pred HHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 039695 69 INCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGK 148 (605)
Q Consensus 69 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 148 (605)
.+...++|+++.|.++-+++ .+...|..|-....+.|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456789999999998876 4678899999999999999999999988744 555555666778888777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 149 QIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 149 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 220 (605)
++-+.....| . +|.-...+.-.|+++++.++|.+...... -+......|..+.|.++..++
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 7766666655 2 34444556677999999999987754211 111122356677777777665
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.00 E-value=1 Score=35.83 Aligned_cols=91 Identities=13% Similarity=-0.045 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--CCchhhHHHHHHHHHHHcCChHHHH
Q 039695 347 VDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE---AYKLAKSIQVD--PDGGPLLWGTLLSASRLHGRVDIAV 421 (605)
Q Consensus 347 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--p~~~~~~~~~ll~~~~~~g~~~~a~ 421 (605)
+..+.+-|...... +. |+..+-..+..++.+.....+ ++.+++.+-.. |.......-.|.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444445444232 22 666666667777777776665 77777765422 2122445566778899999999999
Q ss_pred HHHHHHHhcCCCCCchHH
Q 039695 422 EASNQLIESNQQVANAYV 439 (605)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~ 439 (605)
+.++.+++.+|++..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 999999999998865433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.98 E-value=0.24 Score=39.49 Aligned_cols=65 Identities=9% Similarity=-0.078 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 401 PLLWGTLLSASRLHGRVDI---AVEASNQLIESN-Q-QVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
..+--.+..++.+..+... ++.+++.+...+ | ........|+-++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 6666667777777776555 999999998876 5 344577789999999999999999999998743
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.94 E-value=0.081 Score=49.03 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHhh-----cCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHHH-cCCh
Q 039695 348 DEGIQHLDSMYRKYGIIPD---AKHYTCVVDMLGR-----TGRLDEAYKLAKSI-QVDPDGGPLLWGTLLSASRL-HGRV 417 (605)
Q Consensus 348 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p~~~~~~~~~ll~~~~~-~g~~ 417 (605)
..|...+++.+ .+.|+ ...|..|...|.+ -|+.++|.+.|++. ...|+.+..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 45666 4567777777777 37888888888763 35565346667777777766 4788
Q ss_pred HHHHHHHHHHHhcCCC
Q 039695 418 DIAVEASNQLIESNQQ 433 (605)
Q Consensus 418 ~~a~~~~~~~~~~~p~ 433 (605)
+.+.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887665
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.28 Score=52.51 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=50.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 408 LSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 408 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
..-|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|.-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456778999999999999999999999999999999999999999999998874
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.38 E-value=2.5 Score=35.94 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 039695 173 YGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREF 220 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 220 (605)
...+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34566666666665554 34556666666666666666666666554
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.33 E-value=0.0027 Score=62.77 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhccc
Q 039695 164 VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASL 243 (605)
Q Consensus 164 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~ 243 (605)
.+|..|..++.+.|.+.+|.+.| ++..|+..|..+|....+.|.+++-+..+...++.. - ++..=+.++-+|++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R--ESYVETELIFALAKT 129 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C--STTTTHHHHHHHHTS
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c--ccccHHHHHHHHHhh
Confidence 34555555555555555444433 222344445555555555555555555554433322 2 222223455555555
Q ss_pred CchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC------------------------CCCcchH
Q 039695 244 GRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRIS------------------------NPSVVTY 299 (605)
Q Consensus 244 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------------------------~~~~~~~ 299 (605)
+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+. ..++.||
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 55444332221 2333333444455555555555555554443 1577899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHh
Q 039695 300 TSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIP-DAKHYTCVVDMLG 378 (605)
Q Consensus 300 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 378 (605)
-.+-.+|...+.+.-|.-.--.++ +.||. ...++.-|...|.+++-+.+++.-. |++- ....++-|.-+|+
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHHH
Confidence 999999999998887766655555 33332 2246667888899999888888654 6543 4788888888888
Q ss_pred hcCCHHHHHHHHHhCCC---CCC-----chhhHHHHHHHHHHHcCChHHHH
Q 039695 379 RTGRLDEAYKLAKSIQV---DPD-----GGPLLWGTLLSASRLHGRVDIAV 421 (605)
Q Consensus 379 ~~g~~~~A~~~~~~m~~---~p~-----~~~~~~~~ll~~~~~~g~~~~a~ 421 (605)
+- ++++-++.++..-. -|. .....|.-+.-.|....+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 75 45555555443211 121 01446888888888888887664
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.32 E-value=0.26 Score=38.03 Aligned_cols=65 Identities=9% Similarity=-0.098 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 401 PLLWGTLLSASRLHGRVDIAVEASNQLIESN-------QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
..-+-.|...+...|+++.|..-++++++.. +..+.++..|+.+|.+.|+++.|...+++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4556688899999999999999999999753 2345578999999999999999999999987743
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.17 E-value=2.5 Score=33.89 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=90.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 039695 105 NMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARR 184 (605)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 184 (605)
-.|..++..++..+..... +..-||.++--....-+-+...++++.+=+ -.|. .+||++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHH
Confidence 3566677777777665532 445566666555555555544444443322 1121 24555555555
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCC
Q 039695 185 VFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCE 262 (605)
Q Consensus 185 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 262 (605)
.+-.+.. +....+.-+......|.-++-.+++.++... .+|++.....+..||.+.|+..++..++.++-+.|++
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5554432 3334556677888899999988888885443 5788899999999999999999999999988888854
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.83 E-value=3.2 Score=33.69 Aligned_cols=64 Identities=6% Similarity=-0.066 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039695 401 PLLWGTLLSASRLHGR---VDIAVEASNQLIESNQQV-ANAYVTLSNTYALAGEWENVHSLRSEMKRT 464 (605)
Q Consensus 401 ~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 464 (605)
..+--.+..++.+..+ ..+++.+++.+....|.. ......|+-+|.+.|++++|.+..+.+.+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4443344444444443 446777777777766643 335556777777777777777777777664
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.98 E-value=6.8 Score=39.28 Aligned_cols=163 Identities=7% Similarity=-0.034 Sum_probs=83.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--------CC--hhhHH
Q 039695 134 VIKACSMLADLITGKQIHTHIETF--GFQYN---LVVCSSLVDMYGKCNDVDGARRVFDLMGC--------RN--VVSWT 198 (605)
Q Consensus 134 ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--------~~--~~~~~ 198 (605)
|.+.+...|++.+|..++..+... |..+. ...+...+..|...+++..|..++.++.. |+ ...+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 444555566666666666655432 11111 23455556666677777777666655421 11 12345
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHH----hhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 039695 199 SIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVIN----ACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDM 274 (605)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~----a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 274 (605)
.++..+...+++.+|-+.|.+.........|...+..++. ...-.+....-..+.....+...-++...+..|+.+
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~ 302 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKL 302 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHH
Confidence 5566666777777777766666432111223222211111 111111112222233333333334567788889999
Q ss_pred HHhc--CCHHHHHHHHhccCCCCc
Q 039695 275 YAKC--GSVNYSDKVFNRISNPSV 296 (605)
Q Consensus 275 y~~~--g~~~~A~~~~~~~~~~~~ 296 (605)
|... .+++.+.+.|.....++.
T Consensus 303 f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 303 FTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHhchHhhhHHHHHHHHHHhcccc
Confidence 8764 457788888877665443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.06 E-value=19 Score=39.49 Aligned_cols=303 Identities=10% Similarity=-0.014 Sum_probs=133.1
Q ss_pred HHHHHHHHcCCChhHH-HHHH-hcCC-CCChhhHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--Hh
Q 039695 66 NHLINCYVRLKKTQVA-RQLF-DEML-EPNVVSYTS-LMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKA--CS 139 (605)
Q Consensus 66 ~~li~~~~~~g~~~~A-~~~f-~~m~-~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a--~~ 139 (605)
.++.+++..+|--.+. .+.. +.+. ..+..-+.+ .--|....|+.++++.++...+..+-..+.++-...+-+ ..
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 3556777777643332 1111 1121 123323333 233556677777777776655442111233333322222 23
Q ss_pred ccCChHHHHHHHHHHHHhCC-------CCchhHHHHHH--HHHHhCCCHHHHHHHHhhcCCCChh-hH-HH--HHHHHHH
Q 039695 140 MLADLITGKQIHTHIETFGF-------QYNLVVCSSLV--DMYGKCNDVDGARRVFDLMGCRNVV-SW-TS--IIVAHAQ 206 (605)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~Li--~~y~~~g~~~~A~~~~~~m~~~~~~-~~-~~--li~~~~~ 206 (605)
..|..+++..++...+...- .+......+|. -+|.-.++-+-...+..-+...+.. .+ .+ |...|+-
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 44444456665555544321 01122222222 2333344433333333333333322 11 11 2222344
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChhHHHhHHH--hhcccCchhhHHHHHHHHHHhCCCCcHhHHH--HHHHHHHhcCCHH
Q 039695 207 NAQGHEALEMFREFNYQSRDRPNQHMLASVIN--ACASLGRLVSGKVAHGVVVRSGCEFNDVVAS--ALVDMYAKCGSVN 282 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~y~~~g~~~ 282 (605)
.|+.+-...++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|...... ++.-+|+..|+..
T Consensus 503 Tgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 503 TGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp CCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 555555555555554321 2222222333 3335677777777776666532 33333222 3344566777776
Q ss_pred HHHHHHhccCC-C--CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHHH
Q 039695 283 YSDKVFNRISN-P--SVVTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLV-DEGIQHLDSMY 358 (605)
Q Consensus 283 ~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 358 (605)
...+++..+.+ + ++.....+.-|+...|+.+.+..++..+.+.+ .|....-..+.-+....|.. .++...+..+.
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66667766542 2 22222223334444666666666666555432 34333322333333333332 45666666663
Q ss_pred HhcCCCCcHHHHHHHHHHHh
Q 039695 359 RKYGIIPDAKHYTCVVDMLG 378 (605)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~ 378 (605)
. .++..+-..-+.+++
T Consensus 657 ~----D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 657 K----DPVDFVRQAAMIALS 672 (963)
T ss_dssp T----CSSHHHHHHHHHHHH
T ss_pred c----CCCHHHHHHHHHHHH
Confidence 2 445444433444444
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.80 E-value=11 Score=35.46 Aligned_cols=169 Identities=8% Similarity=0.026 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHH----HHHHHHcCCCCCChhHHHhHHHhh
Q 039695 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEM----FREFNYQSRDRPNQHMLASVINAC 240 (605)
Q Consensus 165 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~p~~~t~~~ll~a~ 240 (605)
.|-++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+ +++|......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3445555678888888888876542 3345566776655543 33344455 778877777776665
Q ss_pred cccCchh-hHHHHHHHHH----HhCC--CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHc---C
Q 039695 241 ASLGRLV-SGKVAHGVVV----RSGC--EFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKY---G 310 (605)
Q Consensus 241 ~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 310 (605)
.....-+ .-..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5432211 1223333333 3331 236788888999999999999999887633323455555555444443 4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 039695 311 LGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 311 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 360 (605)
...++--+ .-.+++ -|...+++..|..+|+...++
T Consensus 183 ~~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33332111 112222 233567888888888876543
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.37 E-value=1.5 Score=36.02 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=44.2
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 413 LHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 413 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
..+|+++|.++|+.++.....=+..|...+..-.+.|+.+.|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3478999999999998874333557777788888999999999999998886654
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.90 E-value=5.6 Score=29.80 Aligned_cols=87 Identities=9% Similarity=0.034 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221 (605)
Q Consensus 142 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 221 (605)
...++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+.+..||..+|-+|-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 33333344456778999999999999999999999988755 46788888888887887
Q ss_pred HcCCCCCChhHHH
Q 039695 222 YQSRDRPNQHMLA 234 (605)
Q Consensus 222 ~~~~~~p~~~t~~ 234 (605)
..| .|....|.
T Consensus 97 ~sg--~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ--DPRIQTFV 107 (116)
T ss_dssp TCC--CHHHHHHH
T ss_pred hCC--CHHHHHHH
Confidence 766 45544443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.41 E-value=1 Score=44.50 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 039695 402 LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKR-----TGIHKEPG 471 (605)
Q Consensus 402 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 471 (605)
.....++.++...|+.+++...+..++..+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555677778889999999999999999998888999999999999999999998888754 57776654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.26 E-value=4.3 Score=43.41 Aligned_cols=125 Identities=8% Similarity=-0.014 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHhcCCC--CChhh--HHHHHHHHHhcCC-hhHHHHHHHHHHhC------CCCCChh---
Q 039695 65 LNHLINCYVRLKK-TQVARQLFDEMLE--PNVVS--YTSLMAGYINMGQ-PQIALLLFQKMLGN------LVWPNEF--- 129 (605)
Q Consensus 65 ~~~li~~~~~~g~-~~~A~~~f~~m~~--~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~pd~~--- 129 (605)
...|+..+.-.|+ .+.|..+|+++.. |...+ ..++|..+.+.++ --+|+.++.+..+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 5778889988744 32222 2233333333332 22455555554321 1222111
Q ss_pred --------hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 039695 130 --------TFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMG 190 (605)
Q Consensus 130 --------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 190 (605)
....-.+.|...|+++.|+++-.+.+... +.+-.+|..|...|.+.|+++.|+-.+..+|
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111234567889999999999888874 5667889999999999999999999999887
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.95 E-value=5.3 Score=29.89 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 142 ADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFN 221 (605)
Q Consensus 142 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 221 (605)
...++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+....||..+|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 33333344456778999999999999999999999987754 47888888888888887
Q ss_pred HcCCCCCChhHHH
Q 039695 222 YQSRDRPNQHMLA 234 (605)
Q Consensus 222 ~~~~~~p~~~t~~ 234 (605)
..| .|....|.
T Consensus 96 ~sg--~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS--DPALADFA 106 (115)
T ss_dssp TCS--SHHHHHHH
T ss_pred hCC--CHHHHHHH
Confidence 776 45554444
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.37 E-value=31 Score=36.09 Aligned_cols=437 Identities=9% Similarity=-0.037 Sum_probs=227.8
Q ss_pred hhhhccchHHHHHHHHHhhhCCCCCChhhHHHHHHHhhChhHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCChhHHH
Q 039695 4 SLTRNLIFTLAASSLTRQNKRSSCHTKAHFIQQLQECKHLISLASVHSEILKSG-FLSNTFTLNHLINCYVRLKKTQVAR 82 (605)
Q Consensus 4 ~l~~~~~~~~a~~~l~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~ 82 (605)
...+.|++..+.++...+...++. ....|..+....... ...++...+.+.. .+.....-+.-+..+++.+++....
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 345678888887777777554442 223454444433321 2356666666653 2222344455677788889999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH--HHHHHHHHHHhC--
Q 039695 83 QLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLIT--GKQIHTHIETFG-- 158 (605)
Q Consensus 83 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~--a~~~~~~~~~~g-- 158 (605)
..+.. +..+...-.....+....|+..+|......+=..|-. .......++..+.+.|.+.. ..+=+..+...|
T Consensus 93 ~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~ 170 (618)
T 1qsa_A 93 AFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNT 170 (618)
T ss_dssp HHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCH
T ss_pred HhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Confidence 87776 4335554555667777889988888877777655532 44556667777665554322 222222222222
Q ss_pred ---------CCCch-hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhh---HHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 039695 159 ---------FQYNL-VVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVS---WTSIIVAHAQNAQGHEALEMFREFNYQSR 225 (605)
Q Consensus 159 ---------~~~~~-~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 225 (605)
++++. .....++..+.+-..+ ....... .++... ...-+.-+.+ .+++.|..+|........
T Consensus 171 ~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~ 245 (618)
T 1qsa_A 171 GLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ 245 (618)
T ss_dssp HHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC
Confidence 11111 1122222222222122 2222221 111111 1112223333 378999999988876542
Q ss_pred CCCChh--HHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc--ch-HH
Q 039695 226 DRPNQH--MLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSV--VT-YT 300 (605)
Q Consensus 226 ~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~-~~ 300 (605)
..+... ....+.......+...++...+....... .+.....-.+....+.|+++.|.+.|+.|..... .- .-
T Consensus 246 ~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~Y 323 (618)
T 1qsa_A 246 LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRY 323 (618)
T ss_dssp CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHH
Confidence 322222 12233334445553445555555544333 2333344444555678999999999999986322 21 22
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---H-H--HHHHHH
Q 039695 301 SMIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD---A-K--HYTCVV 374 (605)
Q Consensus 301 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~-~--~~~~li 374 (605)
=+..++...|+.++|..+|.++... . +|-.++.+ .+.|..-. + ......+. . . ....-+
T Consensus 324 W~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~ 388 (618)
T 1qsa_A 324 WQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARV 388 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHH
Confidence 2445677889999999999998742 2 34343322 22221100 0 00001110 0 0 112234
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCh
Q 039695 375 DMLGRTGRLDEAYKLAKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQ---QVANAYVTLSNTYALAGEW 451 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~ 451 (605)
..+...|...+|...+..+....+ ......+.......|..+.++....+....+. .-|..|..++.-+++.-.+
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv 466 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEI 466 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSS
T ss_pred HHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCC
Confidence 567788999999888776543334 44444555556678888888766654332220 1123566667777766666
Q ss_pred hHHHHHHHHHHhCCCcc
Q 039695 452 ENVHSLRSEMKRTGIHK 468 (605)
Q Consensus 452 ~~a~~~~~~m~~~~~~~ 468 (605)
+...-.---..+.+..|
T Consensus 467 ~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 467 PQSYAMAIARQESAWNP 483 (618)
T ss_dssp CHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 65443322333445544
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.99 E-value=21 Score=33.81 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=96.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHH----HHHHHcCCCCCChhHHHhHHHhhc
Q 039695 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMF----REFNYQSRDRPNQHMLASVINACA 241 (605)
Q Consensus 166 ~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~p~~~t~~~ll~a~~ 241 (605)
|-++..=|.+.+++++|.+++-+- ...+.+.|+...|-++- +-..+.+ +++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 344555578888888888876542 33455566665544433 4444555 7788777777766665
Q ss_pred ccCchh-hHHHHHHH----HHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhH
Q 039695 242 SLGRLV-SGKVAHGV----VVRSG--CEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314 (605)
Q Consensus 242 ~~~~~~-~a~~~~~~----~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (605)
....-+ .-..+... -.+.| ..-|+.....+...|.+.+++.+|+..|-.-.++++..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 544321 11222333 33333 234677788889999999999999998853333334566555554444433222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 039695 315 SLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR 359 (605)
Q Consensus 315 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 359 (605)
+ |...-.+++. |...+++..|..+++...+
T Consensus 186 ~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 2 2222223332 4445788888777766643
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.03 E-value=5 Score=32.11 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039695 419 IAVEASNQLIESNQQV-ANAYVTLSNTYALAGEWENVHSLRSEMKR 463 (605)
Q Consensus 419 ~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 463 (605)
+|+.+++.+.+.+|.. ...+..|+-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444422 22344445555555555555555554443
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.53 E-value=3.6 Score=30.95 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 312 GRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 312 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+.+..+.+-. ..+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 33555666666667788999999999999999999999999999886554333 445666654
No 250
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.41 E-value=21 Score=37.51 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=38.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh--
Q 039695 200 IIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAK-- 277 (605)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 277 (605)
....+.-.|+++.|++.+.+. ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 445556678888888877643 24566666666655443332 11111110 00 11 2224556666654
Q ss_pred -cCCHHHHHHHHhcc
Q 039695 278 -CGSVNYSDKVFNRI 291 (605)
Q Consensus 278 -~g~~~~A~~~~~~~ 291 (605)
..+..+|.+.|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 45666666665554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.31 E-value=18 Score=41.24 Aligned_cols=126 Identities=11% Similarity=-0.054 Sum_probs=82.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--C-----------------
Q 039695 336 GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV--D----------------- 396 (605)
Q Consensus 336 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----------------- 396 (605)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|++... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445555566666555543322 22333334456677778888888888876420 0
Q ss_pred ----CCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 397 ----PDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN-----AYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 397 ----p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
.+..+.-|.-++..+.+++.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 0101234666778888999999999999998876543322 5677788889999999999998888766554
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.91 E-value=7.3 Score=32.55 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 039695 366 DAKHYTCVVDMLGRTGRLDEAYKLAKSIQVD 396 (605)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (605)
+.+.---+..+|.+.|++++|+.+++.+|.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3444455667777888888888888887633
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.83 E-value=0.97 Score=37.81 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=22.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHH
Q 039695 436 NAYVTLSNTYALAGEWENVHSLRSEMK 462 (605)
Q Consensus 436 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 462 (605)
..-.-+..+|.+.|++++|..+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 355678899999999999999987653
No 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.07 E-value=14 Score=33.76 Aligned_cols=208 Identities=11% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHHHHcCCChhHHHHHHhcCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhc
Q 039695 67 HLINCYVRLKKTQVARQLFDEMLEPNVV----SYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFT--FATVIKACSM 140 (605)
Q Consensus 67 ~li~~~~~~g~~~~A~~~f~~m~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t--~~~ll~a~~~ 140 (605)
..+...++.|+++....+++.-..++.. -++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 3444455666766666666654332211 122 33333445554 34444445555443321 1122333334
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCCHHHHHHHHhhcCCCChh-------------hHHHHHHHHH
Q 039695 141 LADLITGKQIHTHIETFGFQYNLVV--CSSLVDMYGKCNDVDGARRVFDLMGCRNVV-------------SWTSIIVAHA 205 (605)
Q Consensus 141 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-------------~~~~li~~~~ 205 (605)
.|+.+ +.+.+.+.|..++... ..+.+...++.|+.+-...+++.-..++.. .++ .+...+
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~ 156 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAA 156 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHH
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHH
Confidence 45544 3334444554433211 112334445667776666666654332211 112 223334
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCC---hhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCC
Q 039695 206 QNAQGHEALEMFREFNYQSRDRPN---QHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV--VASALVDMYAKCGS 280 (605)
Q Consensus 206 ~~g~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~ 280 (605)
..|+.+-+..+++.. | ..++ ....+.+.. .+..+.......+...+.+.|..++.. ...+.+...++.|+
T Consensus 157 ~~~~~~~v~~Ll~~~---~-~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 157 EKGHVEVLKILLDEM---G-ADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHTCHHHHHHHHHTS---C-CCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHhc---C-CCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 455544333333221 2 3332 222222222 233444444456666666666554432 11223344445566
Q ss_pred HHHHHHHHh
Q 039695 281 VNYSDKVFN 289 (605)
Q Consensus 281 ~~~A~~~~~ 289 (605)
.+-+..+++
T Consensus 232 ~~~v~~Ll~ 240 (285)
T 1wdy_A 232 LGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555555
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.87 E-value=31 Score=32.32 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCChhhHHHHHHH
Q 039695 62 TFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLL----FQKMLGNLVWPNEFTFATVIKA 137 (605)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~pd~~t~~~ll~a 137 (605)
...|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.++++|..+...++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345677778888889999999886542 3345566776655554 4555667888888888877777
Q ss_pred HhccCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc
Q 039695 138 CSMLADLI-TGKQIHTHIE----TFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207 (605)
Q Consensus 138 ~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 207 (605)
+.....-+ .=.++...++ +.| ...++.....+...|.+.|++.+|+.-|-.-...|...+..++.-+.+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 65532111 1123333333 333 2247788888999999999999999877633222455555555544443
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.50 E-value=13 Score=30.46 Aligned_cols=62 Identities=16% Similarity=0.006 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 039695 107 GQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVVCSSL 169 (605)
Q Consensus 107 g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 169 (605)
+++++|.++|+.++..+-+. ...|..-...-.+.|++..|++++...+..+..|....-.++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 67777777777776542221 222222223335677788888888877777655544433333
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.38 E-value=9.1 Score=37.52 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=47.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCcHHHH
Q 039695 302 MIVGAAKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYR----KYGIIPDAKHY 370 (605)
Q Consensus 302 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 370 (605)
++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 455666677777777777777654 334667788888888888888888877776533 45788876553
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.72 E-value=39 Score=31.97 Aligned_cols=134 Identities=8% Similarity=-0.000 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChhhHHHHHHHH
Q 039695 63 FTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLF----QKMLGNLVWPNEFTFATVIKAC 138 (605)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~pd~~t~~~ll~a~ 138 (605)
..|.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35667777788899999999876442 33455667766555443 5556678888888887777777
Q ss_pred hccCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc
Q 039695 139 SMLADLI-TGKQIHTHIE----TFG--FQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQN 207 (605)
Q Consensus 139 ~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 207 (605)
.....-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|=--..+++..+..|+.-+.+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 6554321 1122333333 233 3446677788888888888888888887432222335555554444433
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.50 E-value=14 Score=33.57 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=22.8
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 307 AKYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 307 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.+.|..++|++....-++. -+-|...-..++.-+|-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555555444443 1223333344444445555555555444444
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.25 E-value=13 Score=28.10 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 393 IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 393 m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
+-.-|+ +.+..+.+.||++.+++..|.++++-+...-.+...+|-.++ .++.-.+.+.|+.
T Consensus 39 ~DlVP~--P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI~ 99 (109)
T 1v54_E 39 YDLVPE--PKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 99 (109)
T ss_dssp SSBCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred cccCCC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 345677 888888889999999999999888887765433344555543 3444555566664
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.10 E-value=48 Score=32.31 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=23.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHH
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPD----AKHYTCVVDMLGRTGRLDEAYKLA 390 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 390 (605)
+..-|...|++.+|.+++..+.++..-..+ .++|..-+.+|...+++.++...+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344444555555555444444332211111 334444444555555555554444
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.36 E-value=11 Score=30.20 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 039695 314 FSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVD 375 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 375 (605)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555666666677889999999999999999999999999998865543 34556666654
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.98 E-value=36 Score=33.87 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=119.0
Q ss_pred cCChhHHHHHHHHHHHcCC----CCCChhHHHhHHHhhcccCchhhHHHHHHHHHH-hCCCCcHh--HHHHHHHHHHhcC
Q 039695 207 NAQGHEALEMFREFNYQSR----DRPNQHMLASVINACASLGRLVSGKVAHGVVVR-SGCEFNDV--VASALVDMYAKCG 279 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~----~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~--~~~~li~~y~~~g 279 (605)
.|++++|++.+..+.+..+ ..........++..|...++++...+....+.+ +|..+... ..+.+++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3789999988877764321 333455677888999999999988777766655 34322221 2223333333333
Q ss_pred CHH--HHHHHHhccCC---CCc-------chHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHh
Q 039695 280 SVN--YSDKVFNRISN---PSV-------VTYTSMIVGAAKYGLGRFSLDLFNEMISR--GIKPN---DVTFVGVLHACS 342 (605)
Q Consensus 280 ~~~--~A~~~~~~~~~---~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~ll~a~~ 342 (605)
..+ .-..+.+.... .-+ .....|...|...|++.+|.+++.++... |..+. ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 332 23334443332 111 12345677888999999999999998753 33222 135666778888
Q ss_pred ccCcHHHHHHHHHHHHHhc-CC--CCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 039695 343 HSGLVDEGIQHLDSMYRKY-GI--IPD--AKHYTCVVDMLGRTGRLDEAYKLAKSIQ 394 (605)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~~-~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (605)
..+++.+|..++..+.... .. .|+ ...|.+++..+...+++.+|.+.|.++-
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999998874221 12 233 4567788888888999999888776653
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.83 E-value=36 Score=38.74 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=57.3
Q ss_pred HHhhcccCchhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCc-----------------
Q 039695 237 INACASLGRLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISN---PSV----------------- 296 (605)
Q Consensus 237 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~----------------- 296 (605)
+..+...+..+.+.++... ++.++...-.+..+|..+|++++|.+.|.+... .+.
T Consensus 819 ~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3334444444444443322 233444445566777888888888888876642 000
Q ss_pred ------chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHH
Q 039695 297 ------VTYTSMIVGAAKYGLGRFSLDLFNEMISRGIKPND----VTFVGVLHACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 297 ------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m 357 (605)
.-|.-++..|.++|.++.++++-...++...+-+. ..|..+..++...|++++|...+-.+
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 11344455555555555555555444432111111 12444555555555555555555444
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.39 E-value=16 Score=29.23 Aligned_cols=73 Identities=11% Similarity=-0.027 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 364 IPDAKHYTCVVDMLGRTGRLD---EAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
.|+..+--.+..++.+....+ +++.+++++- ..|......+--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 344444444555555554432 3444444432 223222446666777888888888888888888888888754
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.96 E-value=24 Score=26.44 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 245 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
..++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665553 33333333455667899999999988888888888877644 466777777777767766
Q ss_pred cC
Q 039695 325 RG 326 (605)
Q Consensus 325 ~g 326 (605)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.22 E-value=25 Score=26.36 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 039695 245 RLVSGKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRFSLDLFNEMIS 324 (605)
Q Consensus 245 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 324 (605)
..++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665553 33333333445667888888888888888888888877654 356666666666666665
Q ss_pred cC
Q 039695 325 RG 326 (605)
Q Consensus 325 ~g 326 (605)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 268
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.82 E-value=23 Score=32.65 Aligned_cols=19 Identities=16% Similarity=-0.113 Sum_probs=9.0
Q ss_pred HHHHHhCCCHHHHHHHHhh
Q 039695 170 VDMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 170 i~~y~~~g~~~~A~~~~~~ 188 (605)
+...+..|+.+-+.-+++.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555555544444
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=71.52 E-value=1e+02 Score=32.29 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=23.7
Q ss_pred HHHHHHHHHH-----HhhcCCHHHHHHHHHhCCCCCC
Q 039695 367 AKHYTCVVDM-----LGRTGRLDEAYKLAKSIQVDPD 398 (605)
Q Consensus 367 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 398 (605)
..++..|.++ +...|++++|++.+++++.-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 4455555443 3678999999999999887775
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.74 E-value=45 Score=26.98 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhCC-CCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 039695 364 IPDAKHYTCVVDMLGRTGRLD---EAYKLAKSIQ-VDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANA 437 (605)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~-~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 437 (605)
.|+..+-..+..++.+....+ +++.+++.+- ..|.......--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 455666556666666665443 4555555532 2343234556667788999999999999999999999998643
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.26 E-value=9.8 Score=34.65 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=44.5
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 039695 375 DMLGRTGRLDEAYKLAKS-IQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVA 435 (605)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 435 (605)
..+.+.|.+++|++.... ++..|. +...-..|+..++..|++++|.+=++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 345678888888887654 555554 256666788888888888888888888888888653
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.28 E-value=33 Score=27.42 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=44.3
Q ss_pred hCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 039695 392 SIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIH 467 (605)
Q Consensus 392 ~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 467 (605)
.+-.-|+ +.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++ .++.-.+.+.|+.
T Consensus 81 ~~DlVPe--P~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l------------qElkPtl~ELGI~ 142 (152)
T 2y69_E 81 GYDLVPE--PKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 142 (152)
T ss_dssp TSSBCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred ccccCCC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 3446688 889999999999999999999999888765433344565553 3445555666764
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.76 E-value=62 Score=27.50 Aligned_cols=80 Identities=9% Similarity=0.108 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039695 60 SNTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACS 139 (605)
Q Consensus 60 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~ 139 (605)
+|..+-...+..+++.|..+....+.+.+..++...-...+.++.+.|.. ++...+..+... +|...-...+.+..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 33333334444444444433334444444444544444444455544443 223333333321 34334444444444
Q ss_pred ccCC
Q 039695 140 MLAD 143 (605)
Q Consensus 140 ~~~~ 143 (605)
..++
T Consensus 102 ~~~~ 105 (201)
T 3ltj_A 102 QIGD 105 (201)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
No 274
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.75 E-value=1.6e+02 Score=32.30 Aligned_cols=248 Identities=8% Similarity=0.024 Sum_probs=124.1
Q ss_pred HHhCCCHHHHHHHHhhcCC----CC--hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCC---h-hH-HH--hHHH
Q 039695 173 YGKCNDVDGARRVFDLMGC----RN--VVSWTSIIVAHAQNAQGHEALEMFREFNYQSR-DRPN---Q-HM-LA--SVIN 238 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~m~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~---~-~t-~~--~ll~ 238 (605)
....|+.+++..+++.... .+ +..-..+.-+....|..++++.++........ +.-+ . .. -. .+--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777777776543 12 22233344456667776778887777654320 0011 1 11 11 1112
Q ss_pred hhcccCchhhHHHHHHHHHHhCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHhccCC-CCc--chHHHHHHHHHHcCChh
Q 039695 239 ACASLGRLVSGKVAHGVVVRSGCEFND--VVASALVDMYAKCGSVNYSDKVFNRISN-PSV--VTYTSMIVGAAKYGLGR 313 (605)
Q Consensus 239 a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~ 313 (605)
++...++ +++...+..++...- +.. ...-+|.-.|.-.|+-+....++..+.+ .+. .-.-++.-|+...|+.+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2222333 344444444443221 111 2223444456667777777777665432 122 22233344555778998
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH---HHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 039695 314 FSLDLFNEMISRGIKPNDVTFV---GVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLA 390 (605)
Q Consensus 314 ~A~~l~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 390 (605)
.+..+.+.+... ..|. .-|. ++.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|..+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888763 2222 2232 3345677888988777788887532 2233333333333333466666666776
Q ss_pred HhCCCCCCchhhHHH--HHHHHHHHcCCh-HHHHHHHHHHH
Q 039695 391 KSIQVDPDGGPLLWG--TLLSASRLHGRV-DIAVEASNQLI 428 (605)
Q Consensus 391 ~~m~~~p~~~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 428 (605)
+.+....+ +.+-. ++.-+....|+. ..+...+..+.
T Consensus 618 ~~L~~~~d--~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHN--AHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSC--HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCC--HHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 65543334 33222 222222323332 45566666554
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.44 E-value=72 Score=27.08 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=7.4
Q ss_pred CChhHHHhHHHhhcccCc
Q 039695 228 PNQHMLASVINACASLGR 245 (605)
Q Consensus 228 p~~~t~~~ll~a~~~~~~ 245 (605)
++...-...+.++...+.
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344443444444444443
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.93 E-value=79 Score=27.07 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=7.0
Q ss_pred cHhHHHHHHHHHHhcCC
Q 039695 264 NDVVASALVDMYAKCGS 280 (605)
Q Consensus 264 ~~~~~~~li~~y~~~g~ 280 (605)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33344444444444443
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.24 E-value=82 Score=26.99 Aligned_cols=48 Identities=4% Similarity=0.090 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHcCCChhHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 039695 61 NTFTLNHLINCYVRLKKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQ 108 (605)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 108 (605)
+..+-...+..+++.|..+....+.+.+..+|...-...+.++.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333444444444443333333333344444444444444444443
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.72 E-value=83 Score=27.17 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 039695 403 LWGTLLSASRLHGRVDIAVEASNQLIES--NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468 (605)
Q Consensus 403 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 468 (605)
.|-..+..| ..++...+..+|..+... +-..+..|...+..+...|++.+|.++++.=.+++-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555544 234466888999888864 45556688899999999999999999998877776544
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=59.47 E-value=96 Score=29.01 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=45.4
Q ss_pred HHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTG 465 (605)
Q Consensus 390 ~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 465 (605)
|...+..|.....+..+-++.+.+++++..|..+.+++++++|... ..++|.++...-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3444455543355778888889999999999999999999998532 3455777777766554
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.55 E-value=70 Score=27.92 Aligned_cols=83 Identities=8% Similarity=-0.059 Sum_probs=34.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCC
Q 039695 103 YINMGQPQIALLLFQKMLGNLVWPNEFT--FATVIKACSMLADLITGKQIHTHIETFGFQYNLVV--CSSLVDMYGKCND 178 (605)
Q Consensus 103 ~~~~g~~~~a~~~~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~ 178 (605)
.++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3445555555555554444444433221 112233333344443 3333334443332211 1122333445566
Q ss_pred HHHHHHHHhhc
Q 039695 179 VDGARRVFDLM 189 (605)
Q Consensus 179 ~~~A~~~~~~m 189 (605)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66555555544
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.19 E-value=75 Score=31.12 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=12.1
Q ss_pred HHHHHcCCChhHHHHHHhcCC
Q 039695 69 INCYVRLKKTQVARQLFDEML 89 (605)
Q Consensus 69 i~~~~~~g~~~~A~~~f~~m~ 89 (605)
+..-+..|+.+-+..+++.-.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHcCC
Confidence 333445677776666666543
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.02 E-value=58 Score=32.17 Aligned_cols=96 Identities=10% Similarity=-0.016 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCchhHHHHH-
Q 039695 94 VSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN--EFTFATVIKACSMLADLITGKQIHTHIETFG-FQYNLVVCSSL- 169 (605)
Q Consensus 94 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~L- 169 (605)
.++..+..-|.+.|+.++|.+.|.+++..-..+. ...+-.+++.+...+++..+......+...- -.++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566777888888888888888888876533332 3456677788888888888888887775431 12222222211
Q ss_pred ---HHHHHhCCCHHHHHHHHhhc
Q 039695 170 ---VDMYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 170 ---i~~y~~~g~~~~A~~~~~~m 189 (605)
.-++...+++..|-..|-+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 11233568888887777554
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.36 E-value=1.1e+02 Score=26.50 Aligned_cols=84 Identities=5% Similarity=-0.026 Sum_probs=46.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCC
Q 039695 135 IKACSMLADLITGKQIHTHIETFGFQYNLV--VCSSLVDMYGKCNDVDGARRVFDLMGCR---NVVSWTSIIVAHAQNAQ 209 (605)
Q Consensus 135 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 209 (605)
|...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..+ +...++.+ ...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCC
Confidence 444556788888888888777766554432 1223445556778887777777654332 22222332 23345565
Q ss_pred hhHHHHHHHH
Q 039695 210 GHEALEMFRE 219 (605)
Q Consensus 210 ~~~A~~~~~~ 219 (605)
.+-+..+++.
T Consensus 92 ~~~~~~Ll~~ 101 (241)
T 1k1a_A 92 PTCLRALLDS 101 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5544444433
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.07 E-value=1e+02 Score=29.41 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCH
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISNPSV---VTYTSMIVGAAKYGL--GRFSLDLFNEMISRGIKPND 331 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 331 (605)
.+.++.-|...|+.++|.+.++++..|.- ....++..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 45677778888888888888888876642 233344444444332 34466667667666655433
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.11 E-value=81 Score=31.12 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 267 VASALVDMYAKCGSVNYSDKVFNRISN------PSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323 (605)
Q Consensus 267 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 323 (605)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-..|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445566666667776666666666542 112344445555556666666666665543
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.23 E-value=97 Score=26.04 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHcCCChhHHHHHHhcCC-C---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039695 72 YVRLKKTQVARQLFDEML-E---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNLVWPN 127 (605)
Q Consensus 72 ~~~~g~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 127 (605)
.+..|+.+....++..-. . +|..-++.|..+ ++.|+. ++++.+.+.|..|+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCC
Confidence 345677777777776543 2 233333333333 344553 34455555565554
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.67 E-value=67 Score=28.87 Aligned_cols=18 Identities=6% Similarity=-0.143 Sum_probs=8.1
Q ss_pred HHHHhCCCHHHHHHHHhh
Q 039695 171 DMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 171 ~~y~~~g~~~~A~~~~~~ 188 (605)
...+..|+.+-+..+++.
T Consensus 44 ~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 44 HNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 333444555444444443
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.53 E-value=75 Score=27.58 Aligned_cols=16 Identities=0% Similarity=-0.124 Sum_probs=7.8
Q ss_pred HHhCCCHHHHHHHHhh
Q 039695 173 YGKCNDVDGARRVFDL 188 (605)
Q Consensus 173 y~~~g~~~~A~~~~~~ 188 (605)
.++.|+.+-+..+++.
T Consensus 116 A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHhc
Confidence 3444555555444443
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.49 E-value=2.1e+02 Score=27.80 Aligned_cols=277 Identities=12% Similarity=0.012 Sum_probs=133.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcCCC--------CChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHH---
Q 039695 65 LNHLINCYVRLKKTQVARQLFDEMLE--------PNVVSYTSLMAGYINMG-QPQIALLLFQKMLGNLVWPNEFTFA--- 132 (605)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~pd~~t~~--- 132 (605)
...|...|.+.|+.++..+++..... .....-..||..+.... ..+.-.++..+..+..- -+..+|-
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34566777777777777777766532 12334555666665532 22333333333322110 0223331
Q ss_pred ---HHHHHHhccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhCCCHHHHHHHHhhcCC------CChhhHH
Q 039695 133 ---TVIKACSMLADLITGKQIHTHIETFGFQY-----NLVVCSSLVDMYGKCNDVDGARRVFDLMGC------RNVVSWT 198 (605)
Q Consensus 133 ---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~ 198 (605)
-+...+...|++.+|.+++..+.+.--.. -..++-.-+.+|...+++..+...+..... +++..-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 45667777788888777777666531111 123455566777777887777776654421 1221111
Q ss_pred --HH--HHHHH-HcCChhHHHHHHHHHHHcCC--CCC---ChhHHHhHHHhhcccCchhhHHHHHH-HHHHhCCCCcHhH
Q 039695 199 --SI--IVAHA-QNAQGHEALEMFREFNYQSR--DRP---NQHMLASVINACASLGRLVSGKVAHG-VVVRSGCEFNDVV 267 (605)
Q Consensus 199 --~l--i~~~~-~~g~~~~A~~~~~~m~~~~~--~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~-~~~~~g~~~~~~~ 267 (605)
-. ...+. ..+++.+|...|-+....-. ..| +...|..+ .+...... .+...+.. .....-..|+...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~r-~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQS-DDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTCG-GGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCCH-HHHHHHhccccccccCCccHHH
Confidence 11 12244 57788888777766532210 011 11123222 22222222 22222221 1111113566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCC-CHHHHHHHHH
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRIS---NPSVVTYTSMIVGAAKYGLGRFSLDLFNEMISRG----IKP-NDVTFVGVLH 339 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-d~~t~~~ll~ 339 (605)
+..|+.+|. .+++.+...++.... ..|...... ...+++++...+ +.| ..+++..+..
T Consensus 259 l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 259 MKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHHHHHH
Confidence 667777654 466766666655543 234331110 112222222211 122 4456666666
Q ss_pred HHhccCcHHHHHHHHHHHHHh
Q 039695 340 ACSHSGLVDEGIQHLDSMYRK 360 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m~~~ 360 (605)
.+.- ..++++..+..|+..
T Consensus 325 ~l~l--s~~evE~~L~~lI~d 343 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILD 343 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHT
T ss_pred HHCc--CHHHHHHHHHHHHHC
Confidence 5543 677888888888665
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.60 E-value=87 Score=31.62 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHhcCCCCCh-hhHHH-------HHHHHHhcCChhHHHHHHHHHHhC
Q 039695 62 TFTLNHLINCYVRLKKTQVARQLFDEMLEPNV-VSYTS-------LMAGYINMGQPQIALLLFQKMLGN 122 (605)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~a~~~~~~m~~~ 122 (605)
..++|.+++.|...+.++.|.++.....-|.. .+-+- +-..++-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35677778888888888888888887755432 22222 224455677888888887776654
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.91 E-value=54 Score=30.00 Aligned_cols=89 Identities=9% Similarity=0.028 Sum_probs=45.1
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCchh-hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 039695 374 VDMLGRTGRLDEAYKLAKSIQVDPDGGP-LLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWE 452 (605)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~p~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 452 (605)
+...+..|+.+-+.-+++.-....+ . .-++. +......|+.+.+..+++.-...+..+..-....+..-+..|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSC-IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH-
T ss_pred HHHHHHcCCHHHHHHHHhCCCcccc--ccCCccH-HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH-
Confidence 3344556777666666665432223 2 33333 34445778888777777765555433322211112223344554
Q ss_pred HHHHHHHHHHhCCCccC
Q 039695 453 NVHSLRSEMKRTGIHKE 469 (605)
Q Consensus 453 ~a~~~~~~m~~~~~~~~ 469 (605)
++.+.+.+.|..++
T Consensus 209 ---~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 209 ---EMLQALFKYDINIY 222 (285)
T ss_dssp ---HHHHHHTTSCBCST
T ss_pred ---HHHHHHHHcCCCCC
Confidence 34455556676543
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.48 E-value=94 Score=26.12 Aligned_cols=152 Identities=11% Similarity=-0.006 Sum_probs=69.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCC
Q 039695 103 YINMGQPQIALLLFQKMLGNLVWPN---EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLVV--CSSLVDMYGKCN 177 (605)
Q Consensus 103 ~~~~g~~~~a~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g 177 (605)
.+..|+.+....++..- +..++ ..-.+ .+...+..|+.+ +.+.+++.|..++... ..+.+...+..|
T Consensus 12 A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT---TYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHTTCHHHHHHHHTCT---TCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHcC---CCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 35667776655555321 21222 22233 333344566655 4444555665554321 123344556778
Q ss_pred CHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhhHHHHH
Q 039695 178 DVDGARRVFDLMGC----RNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVSGKVAH 253 (605)
Q Consensus 178 ~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 253 (605)
+.+-+..+++.-.. ++...++.+ ...+..|+.+-+..+++.-...- ...|..-.+.+..++........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 88888888855431 222222222 33345566554444443320110 1223333334433333222222235566
Q ss_pred HHHHHhCCCCc
Q 039695 254 GVVVRSGCEFN 264 (605)
Q Consensus 254 ~~~~~~g~~~~ 264 (605)
+.+++.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 66666665554
No 293
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.37 E-value=83 Score=27.41 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=9.9
Q ss_pred HHhccCcHHHHHHHHHHH
Q 039695 340 ACSHSGLVDEGIQHLDSM 357 (605)
Q Consensus 340 a~~~~g~~~~a~~~~~~m 357 (605)
.....|+.+.+.++.+.+
T Consensus 216 ~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334555666666655555
No 294
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=39.70 E-value=19 Score=26.20 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=33.4
Q ss_pred CccchHHHHHHHHHHHHHHHHCCccCCCccccccccchhhhhhhhhhhhHHHHHHHcc
Q 039695 490 LFERGSEVLSLLRELERKMKERGYVGGKTGLVFVDVEDEAREEIVGLHSERLALAFGL 547 (605)
Q Consensus 490 ~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~ 547 (605)
..++..+++..+++-..+++..|+.|| .- +.. . ...-+.+|.+...||=
T Consensus 11 ~rgdlirIl~~ieekinELk~dG~ePD-Ii--L~G--~----eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 11 TRGDLIRILGEIEEKMNELKMDGFNPD-II--LFG--R----EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCC-EE--EEC--H----HHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCC-eE--EEc--H----HHHHHHHHHHhHhhcc
Confidence 345667788888889999999999999 32 221 1 1223566777777773
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.06 E-value=1.2e+02 Score=24.01 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcCCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 039695 65 LNHLINCYVRLKKTQVARQLFDEMLEPNV---VSYTSLMAGYINMGQ--PQIALLLFQKMLGNLVW 125 (605)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 125 (605)
.+.++.-|...|+.++|.+.++++..|.- +...++..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45678888888999999999999876622 344555555555432 35677778888776654
No 296
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.96 E-value=98 Score=26.82 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=10.2
Q ss_pred HhccCChHHHHHHHHHHHHhC
Q 039695 138 CSMLADLITGKQIHTHIETFG 158 (605)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~g 158 (605)
.+..|+.+.+.++.+.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 334455555544555555544
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.85 E-value=1.6e+02 Score=24.06 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 039695 418 DIAVEASNQLIESN--QQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468 (605)
Q Consensus 418 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 468 (605)
+.+..+|..+...+ ...+..|...+..+...|++++|.++++.=.+++-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33777888877644 5556678888888999999999999998877766544
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.33 E-value=1.6e+02 Score=27.34 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcCCCCChh--hHHHHHHHHHhcCCh--hHHHHHHHHHHh
Q 039695 65 LNHLINCYVRLKKTQVARQLFDEMLEPNVV--SYTSLMAGYINMGQP--QIALLLFQKMLG 121 (605)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~--~~a~~~~~~m~~ 121 (605)
...+|.-|-..|+.++|...++++..|.-. .-..+|..-...++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 456788888889999999999999766421 122233333333322 344556666653
No 299
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.21 E-value=2.7e+02 Score=26.52 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 039695 165 VCSSLVDMYGKCNDVDGARRVFDLMGCRN 193 (605)
Q Consensus 165 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~ 193 (605)
...++|.-|...|+.++|...++++..|.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 45678889999999999999999998765
No 300
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.78 E-value=1.6e+02 Score=25.17 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCCchhh-----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 039695 383 LDEAYKLAKSIQVDPDGGPL-----LWGTLLSASRLHGRVDIAVEASNQLIESNQQVAN 436 (605)
Q Consensus 383 ~~~A~~~~~~m~~~p~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 436 (605)
++.|+.+++.+...-+.-.. .--..+..|.+.|.+++|.+++++.....+.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 56777788777644331111 2223456788899999999999888877665544
No 301
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=37.37 E-value=14 Score=22.33 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=10.3
Q ss_pred ecccccCCchhhh
Q 039695 560 KNLRMCRDCHDVF 572 (605)
Q Consensus 560 ~~~~~~~~~~~~~ 572 (605)
-++|+|.+|+.-+
T Consensus 15 ~~YRvC~~CgkPi 27 (44)
T 2lo3_A 15 IQYRVCEKCGKPL 27 (44)
T ss_dssp CCEEECTTTCCEE
T ss_pred ccchhhcccCCcc
Confidence 3799999998654
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.47 E-value=1.1e+02 Score=27.14 Aligned_cols=86 Identities=8% Similarity=0.000 Sum_probs=42.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 039695 303 IVGAAKYGLGRFSLDLFNEMIS--RGIKP----NDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDM 376 (605)
Q Consensus 303 i~~~~~~g~~~~A~~l~~~m~~--~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 376 (605)
+..+..+.++++|.+++++... .+.++ +.......+..-.....-..+..+.+.+ .. .++...-...+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 4455566666666666665543 12222 1111122222222222222333334444 22 4455555666788
Q ss_pred HhhcCCHHHHHHHHHh
Q 039695 377 LGRTGRLDEAYKLAKS 392 (605)
Q Consensus 377 ~~~~g~~~~A~~~~~~ 392 (605)
+.|.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888888743
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.38 E-value=1.3e+02 Score=23.77 Aligned_cols=62 Identities=15% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISNPSV---VTYTSMIVGAAKYGL--GRFSLDLFNEMISRGIKP 329 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 329 (605)
.+.++.-|...|+.++|.+.++++..|.- ....++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44577778888888888888888875522 223334444444332 345666677776665443
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.17 E-value=83 Score=27.27 Aligned_cols=17 Identities=0% Similarity=-0.015 Sum_probs=8.2
Q ss_pred HHHhCCCHHHHHHHHhh
Q 039695 172 MYGKCNDVDGARRVFDL 188 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~ 188 (605)
..+..|+.+-+..+++.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555555544443
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.90 E-value=4e+02 Score=29.42 Aligned_cols=88 Identities=10% Similarity=-0.140 Sum_probs=54.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--C-CC---------------
Q 039695 337 VLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDEAYKLAKSIQV--D-PD--------------- 398 (605)
Q Consensus 337 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-p~--------------- 398 (605)
++..|...|..+-+.++... ++.++..--.+..+|..+|++++|.+.|++... . ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 56667777777766553322 233433334567778889999999999987541 0 10
Q ss_pred -----chhhHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039695 399 -----GGPLLWGTLLSASRLHGRVDIAVEASNQLIES 430 (605)
Q Consensus 399 -----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 430 (605)
....-|.-++..+.+++.++.+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01114555666667777777777777777753
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.36 E-value=1.7e+02 Score=25.12 Aligned_cols=63 Identities=6% Similarity=0.011 Sum_probs=37.7
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 039695 96 YTSLMAGYIN---MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD-----LITGKQIHTHIETFGF 159 (605)
Q Consensus 96 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~ 159 (605)
.--+|+++.+ ..+++.|+-.+.+|++.| .|.-..=..++-+.-..|. +..|...++.....|+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445666654 578899999999999988 5554444444545444332 3344455555555564
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.12 E-value=2.1e+02 Score=23.71 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 039695 419 IAVEASNQLIES--NQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGIHK 468 (605)
Q Consensus 419 ~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 468 (605)
....+|..+... +...+..|...+..+...|++.+|.++++.=.+++-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 366778777764 45556688899999999999999999998888777654
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.76 E-value=62 Score=28.87 Aligned_cols=88 Identities=11% Similarity=-0.055 Sum_probs=45.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHHh--ccCChHHHHHHHHHHHHhC---------CC-Cc
Q 039695 102 GYINMGQPQIALLLFQKMLGNLVWPNEFT-------FATVIKACS--MLADLITGKQIHTHIETFG---------FQ-YN 162 (605)
Q Consensus 102 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~~~~g---------~~-~~ 162 (605)
..++.|+.+....+++.+.+.|..++... .+.|..|+. ..|+.+-++.+++.-...+ +. .|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34556777776667776666665555332 233333332 4566666666665543311 00 00
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 039695 163 LVVCSSLVDMYGKCNDVDGARRVFDLMG 190 (605)
Q Consensus 163 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 190 (605)
.. ..+.+...+..|+.+-+.-+++.-.
T Consensus 91 ~~-g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 91 YR-GQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp EE-SBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cC-CCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 01 1223444556777777777776543
No 309
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.58 E-value=2.7e+02 Score=24.86 Aligned_cols=18 Identities=11% Similarity=-0.136 Sum_probs=7.1
Q ss_pred CcHhHHHHHHHHHHhcCC
Q 039695 263 FNDVVASALVDMYAKCGS 280 (605)
Q Consensus 263 ~~~~~~~~li~~y~~~g~ 280 (605)
++..+-...+.+.++.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 310
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=31.68 E-value=12 Score=22.42 Aligned_cols=18 Identities=28% Similarity=0.744 Sum_probs=13.0
Q ss_pred cCCccccc-ccccccCCCC
Q 039695 587 DVNRFHHF-RNGSCSCGDF 604 (605)
Q Consensus 587 d~~~~~~~-~~g~~~~~~~ 604 (605)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34455665 7899999976
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.34 E-value=1e+02 Score=25.19 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 039695 65 LNHLINCYVRLKKTQVARQLFDEMLEPN---VVSYTSLMAGYINMGQ--PQIALLLFQKMLGNLVW 125 (605)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 125 (605)
.+.++.-|...|+.++|.+.++++..|. .++..++..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567788888899999999999887652 2344555555555332 34567777777766654
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.98 E-value=1.7e+02 Score=26.03 Aligned_cols=23 Identities=4% Similarity=-0.181 Sum_probs=15.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 039695 99 LMAGYINMGQPQIALLLFQKMLG 121 (605)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~ 121 (605)
-++.+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666777777777777766543
No 313
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.94 E-value=2.3e+02 Score=27.53 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=37.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHh
Q 039695 100 MAGYINMGQPQIALLLFQKMLGNLVWPNEFT--FATVIKACSMLADLITGKQIHTHIETFGFQYNLV--VCSSLVDMYGK 175 (605)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~ 175 (605)
+...+..|+.+ +++.+.+.|..|+... ..+.|...+..|+.+-++.+ ++.|..++.. ...+.+...++
T Consensus 18 L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHH
Confidence 33344556553 4444445566554332 12344444555665544433 3344333221 11223344455
Q ss_pred CCCHHHHHHHHhh
Q 039695 176 CNDVDGARRVFDL 188 (605)
Q Consensus 176 ~g~~~~A~~~~~~ 188 (605)
.|+.+-+.-+++.
T Consensus 90 ~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 90 IGHTNMVKLLLEN 102 (437)
T ss_dssp HTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhC
Confidence 6666666655554
No 314
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.92 E-value=32 Score=22.91 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChh
Q 039695 207 NAQGHEALEMFREFNYQSRDRPNQH 231 (605)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~p~~~ 231 (605)
.=+++.|+..|.++...|.++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4478899999999888775666554
No 315
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=30.03 E-value=15 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=18.2
Q ss_pred ceEEEecCCcccccccccccCC
Q 039695 581 RDFVVRDVNRFHHFRNGSCSCG 602 (605)
Q Consensus 581 ~~~~~~d~~~~~~~~~g~~~~~ 602 (605)
+.|-+.|.+..|+|+|||-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 5677889999999999996643
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.20 E-value=2.6e+02 Score=23.94 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHH
Q 039695 302 MIVGAA---KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPD-AKHYTCVVDML 377 (605)
Q Consensus 302 li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 377 (605)
+|+++. +..+++.|+-.+-+|++.|..|..+.-..++.|.-..|.- .|+ ...-.+..+++
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlA----------------dP~Al~~a~aa~~a~ 73 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNA----------------DPRAMQVALAAWDCF 73 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG----------------CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCC----------------CHHHHHHHHHHHHHH
Confidence 455554 4688999999999999999888766655555554443321 344 33444555666
Q ss_pred hhcCCHHH
Q 039695 378 GRTGRLDE 385 (605)
Q Consensus 378 ~~~g~~~~ 385 (605)
-+.|..|-
T Consensus 74 ~~iG~PE~ 81 (201)
T 3bge_A 74 TRVGAYEG 81 (201)
T ss_dssp HHTCHHHH
T ss_pred HHHCCcHH
Confidence 66666543
No 317
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=29.05 E-value=3.6e+02 Score=25.15 Aligned_cols=108 Identities=11% Similarity=0.141 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHhC-C----CCCChhhHHHH---HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 039695 108 QPQIALLLFQKMLGN-L----VWPNEFTFATV---IKACSMLADLITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCNDV 179 (605)
Q Consensus 108 ~~~~a~~~~~~m~~~-g----~~pd~~t~~~l---l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 179 (605)
+.++|..+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888777643 1 22333222111 122222112 35677778888888888888888888888888
Q ss_pred HHHHHHHhhcCC--CChhhHHH--HHH----HHHHcCChhHHHHHHHH
Q 039695 180 DGARRVFDLMGC--RNVVSWTS--IIV----AHAQNAQGHEALEMFRE 219 (605)
Q Consensus 180 ~~A~~~~~~m~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~ 219 (605)
+.+.++||.+-. +....+-+ ++. ...+..++++.+..++.
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 888888887643 22222221 111 12233467777777765
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.92 E-value=2.8e+02 Score=23.83 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=31.6
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 039695 301 SMIVGAA---KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345 (605)
Q Consensus 301 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 345 (605)
-+|+++. +..+++.|+-.+-+|.+.| .|..+.-..++.|....|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3556654 4688999999999999999 776665555565555544
No 319
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.00 E-value=2.1e+02 Score=24.74 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=41.5
Q ss_pred ChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-----ChHHHHHHHHHHHHhCC
Q 039695 92 NVVSYTSLMAGYIN---MGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLA-----DLITGKQIHTHIETFGF 159 (605)
Q Consensus 92 ~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~~~~~~~~~g~ 159 (605)
+-..+--+|+++-+ ..+++.|+-.+.+|++.|-.|.-..=..++-+.-.-| -+..|...++.....|+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444556677654 5889999999999999887766555555555553333 23445555555555564
No 320
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=26.95 E-value=1.3e+02 Score=24.40 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=37.0
Q ss_pred hhhhhhhhHHHHHHHcccCCCCC-CcEEEEec-----ccccCCchhhhHhhhhhccceEEEecC
Q 039695 531 EEIVGLHSERLALAFGLISIPKG-ITIRIMKN-----LRMCRDCHDVFKLISDIVERDFVVRDV 588 (605)
Q Consensus 531 ~~~~~~h~e~~a~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~ 588 (605)
...+..|.|+.|+.-........ ..|-|+.. ..=||.|..++.-+. ++-.|++.+.
T Consensus 59 s~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~--~~~~v~~~~~ 120 (146)
T 2fr5_A 59 CYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFG--TDWAVYMTKP 120 (146)
T ss_dssp SGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSSCCCCCHHHHHHHHHTC--SSCEEEEECT
T ss_pred CCCCCcCHHHHHHHHHHhCCCCceEEEEEEeCCCCcccCCCHHHHHHHHHhC--CCCEEEEECC
Confidence 34457899999998776542221 33445544 556999999988776 5556777654
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.43 E-value=1.2e+02 Score=24.67 Aligned_cols=62 Identities=15% Similarity=0.320 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 039695 268 ASALVDMYAKCGSVNYSDKVFNRISNPSV---VTYTSMIVGAAKYGL--GRFSLDLFNEMISRGIKP 329 (605)
Q Consensus 268 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 329 (605)
.+.++.-|...|+.++|.+.++++..|.- ....++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44567777778888888888888765522 223333444444222 334566666666555443
No 322
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.81 E-value=2.1e+02 Score=26.70 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=45.0
Q ss_pred HHhCCCCCCchhhHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039695 390 AKSIQVDPDGGPLLWGTLLSASRLHGRVDIAVEASNQLIESNQQVANAYVTLSNTYALAGEWENVHSLRSEMKRTGI 466 (605)
Q Consensus 390 ~~~m~~~p~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 466 (605)
|......|.....+..+-++.+.+++++..|..+.++++++.|... ..++|.++...-.+.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 3334445543355778888889999999999999999999987521 23457777777766543
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.76 E-value=2.2e+02 Score=26.74 Aligned_cols=213 Identities=8% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChhHHHHHHhcCCCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 039695 66 NHLINCYVRLKKTQVARQLFDEMLEPNVVSYT--SLMAGYINMGQPQIALLLFQKMLGNLVWPNEFTFATVIKACSMLAD 143 (605)
Q Consensus 66 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 143 (605)
...+...+..|+.+.+..+++.-..++..... +.+...+..|+. ++++.+.+.|..++...-.+.+...+..|+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHcCC
Q ss_pred hHHHHHHHHHHHHhCCCCch-------------------hHHHHHHHHHHhCC--CHHHHHHHHhhcCCCChhhH--HHH
Q 039695 144 LITGKQIHTHIETFGFQYNL-------------------VVCSSLVDMYGKCN--DVDGARRVFDLMGCRNVVSW--TSI 200 (605)
Q Consensus 144 ~~~a~~~~~~~~~~g~~~~~-------------------~~~~~Li~~y~~~g--~~~~A~~~~~~m~~~~~~~~--~~l 200 (605)
.+-+..+++.....|..++. ....+.+...+..| +.+-+..+++.-..++.... .+.
T Consensus 97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 176 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176 (364)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCH
Q ss_pred HHHHHHcCChhHHHHHHHHHHH-----cCCCCCChhHHHhHHHhhcccCchhhHHHHHHHHHHhCCCCcHh--HHHHHHH
Q 039695 201 IVAHAQNAQGHEALEMFREFNY-----QSRDRPNQHMLASVINACASLGRLVSGKVAHGVVVRSGCEFNDV--VASALVD 273 (605)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~ 273 (605)
+...+..|+.+-+..+++.-.. .. ..|..-.+.+..|+.... ..+...+++.|..++.. ...+-+.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~tpL~ 249 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLD--YANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTVPLY 249 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHhccccccccccc--ccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHH
Q ss_pred HHHhcCCHHHHHHHHh
Q 039695 274 MYAKCGSVNYSDKVFN 289 (605)
Q Consensus 274 ~y~~~g~~~~A~~~~~ 289 (605)
..++.|+.+-+..+++
T Consensus 250 ~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQ 265 (364)
T ss_dssp HHHHTCCHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHH
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.29 E-value=88 Score=23.23 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHc-C-CChhHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 039695 47 ASVHSEILKSGFLSNTFTLNHLINCYVR-L-KKTQVARQLFDEMLEPNVVSYTSLMAGYINMGQPQIAL 113 (605)
Q Consensus 47 ~~~~~~~~~~g~~~~~~~~~~li~~~~~-~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~ 113 (605)
..+...+.+.|+-.. .-...+ -.. . .+.+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 24 ~~vld~L~~~~vlt~-~~~e~I---~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 24 DQLWDVLLSRELFRP-HMIEDI---QRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTTHHHHHHTTSSCH-HHHHHH---HTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCCCH-HHHHHH---HhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 346666666664422 222211 122 2 47889999999999999999999999998777765553
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.21 E-value=1.8e+02 Score=25.00 Aligned_cols=19 Identities=0% Similarity=-0.095 Sum_probs=10.1
Q ss_pred HHHHHhCCCHHHHHHHHhh
Q 039695 170 VDMYGKCNDVDGARRVFDL 188 (605)
Q Consensus 170 i~~y~~~g~~~~A~~~~~~ 188 (605)
+...+..|+.+-+..+++.
T Consensus 143 L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 143 MHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3334455666666555554
No 326
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.26 E-value=4.3e+02 Score=24.46 Aligned_cols=56 Identities=4% Similarity=0.076 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChh--hHHHHHHHHHHcCCh--hHHHHHHHHHH
Q 039695 166 CSSLVDMYGKCNDVDGARRVFDLMGCRNVV--SWTSIIVAHAQNAQG--HEALEMFREFN 221 (605)
Q Consensus 166 ~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~--~~A~~~~~~m~ 221 (605)
...++.-|...|+.++|...++++..|.-. .-..+|......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467888899999999999999999876421 122233333333322 33445666665
No 327
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.97 E-value=1.6e+02 Score=26.24 Aligned_cols=18 Identities=0% Similarity=-0.177 Sum_probs=10.3
Q ss_pred HHHhCCCHHHHHHHHhhc
Q 039695 172 MYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 172 ~y~~~g~~~~A~~~~~~m 189 (605)
..++.|+.+-+..+++.-
T Consensus 107 ~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 107 IAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHCC
Confidence 334566666666666553
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.90 E-value=95 Score=23.03 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=29.8
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHH
Q 039695 177 NDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEAL 214 (605)
Q Consensus 177 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 214 (605)
...+.|.++++.++.+...+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667655553
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.79 E-value=3.6e+02 Score=23.36 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 039695 299 YTSMIVGAA---KYGLGRFSLDLFNEMISRGIKPNDVTFVGVLHACSHSG 345 (605)
Q Consensus 299 ~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 345 (605)
.--+|+++. +..+++.|+-.+-+|++.|..|..+.-..++.|.-..|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 334566665 46889999999999999998887766666666654444
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.76 E-value=2.7e+02 Score=23.88 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039695 97 TSLMAGYIN---MGQPQIALLLFQKMLGNLVWPNEFTFATVIKAC 138 (605)
Q Consensus 97 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~pd~~t~~~ll~a~ 138 (605)
--+|+++.+ ..+++.|+-.+.+|++.|-.|.-..=..++-+.
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345666654 578999999999999988766544444444444
No 331
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.34 E-value=1.5e+02 Score=29.86 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcH--HHHH-HHHHHHhhcCCHHHHHHHHHh
Q 039695 331 DVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDA--KHYT-CVVDMLGRTGRLDEAYKLAKS 392 (605)
Q Consensus 331 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~ 392 (605)
...++.+++.|.+.+.+++|..+.....--..-.++. ..|. .+...+.-.+++.+|.+.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3556777777888888888887777652000001121 2222 234555667778888777665
No 332
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.13 E-value=3.7e+02 Score=24.73 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCchH--HHHHHHHHHHcCCChhHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 039695 45 SLASVHSEILKSGFLSNTF--TLNHLINCYVRLKKTQVARQLFDEM----LEPNVVSYTSLMAGYINMGQPQIALLLFQK 118 (605)
Q Consensus 45 ~~~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 118 (605)
....+...+++.|..++.. ...+.+...++.|..+.+..+++.- ..+|..-++.|.-+ ++.|+. ++.+.
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~ 291 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAEL 291 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHH
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHH
Confidence 3355556666666655432 1112233445667776666666532 11222223333332 344543 33444
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 039695 119 MLGNLVWPNEFTFATVIKACSMLADLITGKQIHTHIETFGFQYN 162 (605)
Q Consensus 119 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 162 (605)
+++.|..+|..+ .+...+..|+.+ +.+.+++.|-.||
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 556666666554 222233344443 3444555565444
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.87 E-value=2.7e+02 Score=23.79 Aligned_cols=17 Identities=6% Similarity=-0.150 Sum_probs=9.5
Q ss_pred HHHcCCChhHHHHHHhc
Q 039695 71 CYVRLKKTQVARQLFDE 87 (605)
Q Consensus 71 ~~~~~g~~~~A~~~f~~ 87 (605)
..++.|+++....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34455666666666554
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.63 E-value=1.9e+02 Score=23.15 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 039695 144 LITGKQIHTHIETFGFQYNLVVCSSLVDMYGKCND 178 (605)
Q Consensus 144 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 178 (605)
.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33444555555444433344333334444444443
No 335
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=22.58 E-value=89 Score=25.20 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHHHHHHCCccCCC-c----------cccccccchhhhhhhhhhhhHHHHHHHcccCCCC-CCcEEEEec----ccccC
Q 039695 503 ELERKMKERGYVGGK-T----------GLVFVDVEDEAREEIVGLHSERLALAFGLISIPK-GITIRIMKN----LRMCR 566 (605)
Q Consensus 503 ~l~~~m~~~g~~pd~-~----------~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~-~~~~~~~~~----~~~~~ 566 (605)
+...+..+.-|.|=+ . +-++..+.-|.-.-.+..|.|+.|+......... -..|.|+.. ..=||
T Consensus 17 ~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~~~~~~~~PCG 96 (141)
T 2d30_A 17 QEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKRPVPPCG 96 (141)
T ss_dssp HHHHHHHTTCBCTTTCCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSCCCCCH
T ss_pred HHHHHHHHhcCCCcCCCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEeCCCCccCcCH
Confidence 444455577888831 1 1222233333333345689999999776654321 233445543 45688
Q ss_pred CchhhhHhhhhhccceEEEec
Q 039695 567 DCHDVFKLISDIVERDFVVRD 587 (605)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~d 587 (605)
.|..++.-+.. +.-.|++.+
T Consensus 97 ~CRQ~l~E~~~-~~~~V~~~~ 116 (141)
T 2d30_A 97 ACRQVMVELCK-QDTKVYLSN 116 (141)
T ss_dssp HHHHHHHHHSC-TTCEEEEEC
T ss_pred HHHHHHHHhcC-CCeEEEEEC
Confidence 88888776643 344666654
No 336
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.51 E-value=3.3e+02 Score=23.27 Aligned_cols=131 Identities=11% Similarity=-0.005 Sum_probs=55.7
Q ss_pred HHHHHHHhCCCCchHH--HHHHHHHHHcCCChhHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039695 49 VHSEILKSGFLSNTFT--LNHLINCYVRLKKTQVARQLFDEMLE---PNVVSYTSLMAGYINMGQPQIALLLFQKMLGNL 123 (605)
Q Consensus 49 ~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 123 (605)
+.+.+++.|..++... ....+...++.|+.+.+..+++.-.. ++...++.+. ..+..|+. ++++.+.+.|
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~----~~~~~Ll~~~ 100 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKGHY----EVVQYLLSNG 100 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTTCH----HHHHHHHTTT
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCH----HHHHHHHhCC
Confidence 4455556665443311 11233344556777766666654322 2222233332 23344543 3344444444
Q ss_pred -CCCC---hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCCHHHHHHHHhhc
Q 039695 124 -VWPN---EFTFATVIKACSMLADLITGKQIHTHIETFGFQYNLV--VCSSLVDMYGKCNDVDGARRVFDLM 189 (605)
Q Consensus 124 -~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~~~~m 189 (605)
..++ ..-.+ .+...+..|+.+ +.+.+.+.|..++.. ...+.+...++.|+.+-+.-+++.-
T Consensus 101 ~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 167 (237)
T 3b7b_A 101 QMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167 (237)
T ss_dssp CCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred CCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 2222 11122 223333445544 334444455443321 1112333444556666666555543
No 337
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.43 E-value=3.4e+02 Score=22.64 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhCC
Q 039695 316 LDLFNEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTG-RLDEAYKLAKSIQ 394 (605)
Q Consensus 316 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 394 (605)
..+-.++...|+.++.+ ...+..+......+.|..+...-.....-.++.....-++..+.+.| .++.+..+++.+.
T Consensus 87 ~~I~~eL~~KGI~~~~I--~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 87 KVIKLNLSKKGIDDNIA--EDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHTTTCCHHHH--HHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 35556666777764322 22222111111233444444433222222223344455666666666 3445555565554
Q ss_pred CCCC
Q 039695 395 VDPD 398 (605)
Q Consensus 395 ~~p~ 398 (605)
..|+
T Consensus 165 ~~~~ 168 (177)
T 3e3v_A 165 LIFD 168 (177)
T ss_dssp HC--
T ss_pred CCCC
Confidence 4443
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.38 E-value=1.9e+02 Score=23.17 Aligned_cols=64 Identities=8% Similarity=-0.005 Sum_probs=39.5
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 039695 320 NEMISRGIKPNDVTFVGVLHACSHSGLVDEGIQHLDSMYRKYGIIPDAKHYTCVVDMLGRTGRLDE 385 (605)
Q Consensus 320 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (605)
+.|.+.|++++..=. .++..+...+..-.|.++++.+. +.+...+..|-.--++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 346667877665432 34444444555667888888884 33445555555556788888887654
No 339
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=22.18 E-value=25 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=26.4
Q ss_pred CCcEEEEe----cccccCCchhhhHhhhhhccceEEEecCCcccccccccccC
Q 039695 553 GITIRIMK----NLRMCRDCHDVFKLISDIVERDFVVRDVNRFHHFRNGSCSC 601 (605)
Q Consensus 553 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 601 (605)
...+||+. ..++|-+|. +...-..-.++.+||+|+++.|-.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~~--------i~~~~~y~~~~~~Fh~w~~~~~~~ 88 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINYS--------IVKGLKYNQATPTFHQWRDARQVY 88 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEEE--------CCTTCEEEEEETTEEEEECSSCEE
T ss_pred CcEEEEEEEeCCCCeEEEeeE--------EeCCcEEeccCCeeEEEEcCCEEE
Confidence 45677774 466666652 222223346889999999998753
No 340
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.32 E-value=1.1e+02 Score=27.03 Aligned_cols=24 Identities=8% Similarity=-0.277 Sum_probs=14.0
Q ss_pred hhccchHHHHHHHHHhhhCCCCCC
Q 039695 6 TRNLIFTLAASSLTRQNKRSSCHT 29 (605)
Q Consensus 6 ~~~~~~~~a~~~l~~m~~~g~~~~ 29 (605)
++.|+.+....+++.+...|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 456666666666665555554443
No 341
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.21 E-value=1e+02 Score=20.42 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=14.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC
Q 039695 105 NMGQPQIALLLFQKMLGNLVWPN 127 (605)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~pd 127 (605)
..|+.+.|++.+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35667777777777766655554
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.94 E-value=4.9e+02 Score=23.86 Aligned_cols=79 Identities=8% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHhccC-C---CCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 039695 250 KVAHGVVVRSGCEFNDV--VASALVDMYAKCGSVNYSDKVFNRIS-N---PSVVTYTSMIVGAAKYGLGRFSLDLFNEMI 323 (605)
Q Consensus 250 ~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 323 (605)
..+...+++.|..++.. ...+-+...+..|..+.+..++..-. . .|..-++.|..+ ++.|+. ++.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHH
Confidence 34555566666555432 11223444566777777777665321 1 233333444333 345554 3444456
Q ss_pred HcCCCCCHHH
Q 039695 324 SRGIKPNDVT 333 (605)
Q Consensus 324 ~~g~~pd~~t 333 (605)
+.|..||..+
T Consensus 294 ~~GAd~n~~~ 303 (337)
T 4g8k_A 294 KRGASTDCGD 303 (337)
T ss_dssp TTSCSSTTCC
T ss_pred HCCCCCCCCC
Confidence 6677766543
No 343
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.77 E-value=3e+02 Score=21.82 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=10.7
Q ss_pred HHHcCCChhHHHHHHhc
Q 039695 71 CYVRLKKTQVARQLFDE 87 (605)
Q Consensus 71 ~~~~~g~~~~A~~~f~~ 87 (605)
..++.|+.+....+++.
T Consensus 14 ~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 14 EAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHTCHHHHHHHCCT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 34456777777777664
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.74 E-value=4.2e+02 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcH-HH-----HHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 039695 347 VDEGIQHLDSMYRKYGIIPDA-KH-----YTCVVDMLGRTGRLDEAYKLAKSIQVDP 397 (605)
Q Consensus 347 ~~~a~~~~~~m~~~~~~~p~~-~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~p 397 (605)
++.|..+|+.+.+...+..+. .. --..+-.|.+.|.+++|.+++++.-.++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 456677777775544332221 11 1234556788899999999998855343
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.62 E-value=5.7e+02 Score=28.15 Aligned_cols=127 Identities=6% Similarity=-0.060 Sum_probs=71.4
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcccCchhh
Q 039695 169 LVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEALEMFREFNYQSRDRPNQHMLASVINACASLGRLVS 248 (605)
Q Consensus 169 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 248 (605)
++.-+...|..+-|.++..-.+. +...--.+..+|...|++++|...|++.- .| +.++....... +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~g-l~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LV-LYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CT-TCSSCCSCGGG----------HH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hh-cccCcccccch----------hh
Confidence 66777788999988887766664 44333456778899999999999998863 22 33222111100 00
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhc----cCCCCc----chHHHHHHHHHHcC
Q 039695 249 GKVAHGVVVRSGCEFNDVVASALVDMYAKCGSVNYSDKVFNR----ISNPSV----VTYTSMIVGAAKYG 310 (605)
Q Consensus 249 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 310 (605)
...++... ........-|..++..+-+.+.++.+.++-+. +...|. ..|+.++.+.+..|
T Consensus 883 ~~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111000 00011223666777777778877766655433 222232 25666777666544
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.43 E-value=5.3e+02 Score=24.12 Aligned_cols=140 Identities=7% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCChhHHHhHHHhhcc
Q 039695 167 SSLVDMYGKCNDVDGARRVFDLMGCR---NVVSWTSIIVAHAQ-NAQGHEALEMFREFNYQSRDRPNQHMLASVINACAS 242 (605)
Q Consensus 167 ~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 242 (605)
..++.-|...|+.++|.+.++++..| ..+....+..++-+ ...-+.+..++..+.+.+ +-+.......+-..+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~-~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAG-HLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHhh
Q ss_pred cC----chhhHHHHHHHHHH----hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHHcCChhH
Q 039695 243 LG----RLVSGKVAHGVVVR----SGCEFNDVVASALVDMYAKCGSVNYSDKVFNRISNPSVVTYTSMIVGAAKYGLGRF 314 (605)
Q Consensus 243 ~~----~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (605)
.. +...+...+..+.. .|.-|-....+.+...+...|...... ...+..+.+....+.
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl--------------~~vl~~l~~~~g~~~ 159 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLL--------------LEILGLLCKSMGPKK 159 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHH--------------HHHHHHHHHHHCHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHH--------------HHHHHHHHHHcCHHH
Q ss_pred HHHHHHH
Q 039695 315 SLDLFNE 321 (605)
Q Consensus 315 A~~l~~~ 321 (605)
+.++|.+
T Consensus 160 l~~~~~~ 166 (339)
T 1ug3_A 160 VGTLWRE 166 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 347
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.29 E-value=2.5e+02 Score=20.31 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChhHH
Q 039695 148 KQIHTHIETFGFQYNLVVCSSLVDMYGKCNDVDGARRVFDLMGCRNVVSWTSIIVAHAQNAQGHEA 213 (605)
Q Consensus 148 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 213 (605)
..+++.+...|+-... -+..+ -+.....+.|.++++.++.+...++..++.++.+.+...-|
T Consensus 25 ~~lld~L~~~~vlt~~-~~e~I---~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFLTIS-EEEKV---RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSSCHH-HHHHH---HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCCHH-HHHHH---HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3455566665533222 22212 12356788899999999888888888888888877754433
Done!