Query 039696
Match_columns 210
No_of_seqs 242 out of 1192
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 2.4E-25 8.2E-30 156.6 5.5 61 33-93 2-63 (63)
2 1u3e_M HNH homing endonuclease 98.2 3.2E-09 1.1E-13 86.6 -10.9 68 3-74 79-146 (174)
3 3jtz_A Integrase; four strande 87.9 0.92 3.2E-05 32.7 5.2 44 37-80 28-75 (88)
4 3igm_B PF14_0633 protein; AP2 82.8 0.78 2.7E-05 32.8 2.6 27 28-54 2-29 (77)
5 3ju0_A Phage integrase; four s 80.6 2.3 7.9E-05 31.8 4.7 44 37-80 28-75 (108)
6 1z1b_A Integrase; protein-DNA 69.6 4.9 0.00017 33.7 4.5 42 35-80 14-55 (356)
7 1b69_A Protein (integrase); in 32.2 46 0.0016 23.0 3.5 30 31-60 9-39 (69)
8 1x60_A Sporulation-specific N- 31.8 26 0.0009 23.5 2.3 32 46-77 36-67 (79)
9 1uta_A FTSN, MSGA, cell divisi 31.5 44 0.0015 22.6 3.4 32 46-77 36-67 (81)
10 2bn8_A CEDA, cell division act 28.0 28 0.00097 24.7 1.9 40 30-72 36-75 (87)
11 1kcq_A Gelsolin, brevin, ADF, 23.7 98 0.0034 22.0 4.3 35 44-78 28-62 (104)
12 1svq_A Severin; actin-binding; 22.7 87 0.003 22.8 3.9 33 46-78 40-72 (114)
13 2ftc_I Mitochondrial ribosomal 21.2 1.2E+02 0.0041 22.7 4.4 37 44-82 79-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=2.4e-25 Score=156.59 Aligned_cols=61 Identities=56% Similarity=0.944 Sum_probs=57.7
Q ss_pred ceeEEEECCCCcEEEEEecCCC-CceeecCCCCCHHHHHHHHHHHHHHhcCCcCcCCCCCCC
Q 039696 33 TYRGVRRRSSGKWVSEIREPRK-PTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSA 93 (210)
Q Consensus 33 ~yrGVr~r~~gkW~A~I~~~~k-~~ri~LGtf~t~EeAA~AyD~aa~~l~G~~a~~Nfp~s~ 93 (210)
+||||+++++|||+|+|+.+.+ ++++|||+|+|+||||+|||.|+++++|..+++|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 6999999999999999999875 689999999999999999999999999999999999874
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=98.18 E-value=3.2e-09 Score=86.57 Aligned_cols=68 Identities=10% Similarity=-0.090 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEECCCCcEEEEEecCCCCceeecCCCCCHHHHHHHHH
Q 039696 3 YPKSNKSTNPSSSSGSGSGSNASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYD 74 (210)
Q Consensus 3 ~p~dNr~sNLR~at~~~n~~n~~~~~~~~s~yrGVr~r~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD 74 (210)
.+.||+++|||++|+++|..++....++. .++||.+.+.++|.+.|... + .++||.|.|.+|||++|.
T Consensus 79 ~k~nn~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 79 NKDNNLSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CTTCCCGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred CCCCCCHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence 47899999999999999998876554332 25677543335788999886 4 678999999999999964
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=87.86 E-value=0.92 Score=32.69 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=33.3
Q ss_pred EEECCCC--cEEEEEecCCCCceeecCCCC--CHHHHHHHHHHHHHHh
Q 039696 37 VRRRSSG--KWVSEIREPRKPTRIWLGTFA--TPEMAAIAYDVAALAL 80 (210)
Q Consensus 37 Vr~r~~g--kW~A~I~~~~k~~ri~LGtf~--t~EeAA~AyD~aa~~l 80 (210)
|+....| .|+-+.+..+|.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4445555 499999988888899999997 5888887776665554
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=82.84 E-value=0.78 Score=32.78 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCCCCceeEEEEC-CCCcEEEEEecCCC
Q 039696 28 PGRHPTYRGVRRR-SSGKWVSEIREPRK 54 (210)
Q Consensus 28 ~~~~s~yrGVr~r-~~gkW~A~I~~~~k 54 (210)
.+.+|+|+||++. ..+.|+|.-...++
T Consensus 2 ~~~~Sg~pGVsw~kR~~~WlA~W~e~g~ 29 (77)
T 3igm_B 2 SHMSSGYPGVSWNKRMCAWLAFFYDGAS 29 (77)
T ss_dssp --CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred CCCCCCCCcEEeecCCceEEEEEecCCe
Confidence 3578999999988 55899999998654
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=80.56 E-value=2.3 Score=31.77 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=32.3
Q ss_pred EEECCCC--cEEEEEecCCCCceeecCCCC--CHHHHHHHHHHHHHHh
Q 039696 37 VRRRSSG--KWVSEIREPRKPTRIWLGTFA--TPEMAAIAYDVAALAL 80 (210)
Q Consensus 37 Vr~r~~g--kW~A~I~~~~k~~ri~LGtf~--t~EeAA~AyD~aa~~l 80 (210)
|+....| .|+-+.+..+|.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445555 499999988888889999997 5777777666655544
No 6
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.59 E-value=4.9 Score=33.68 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=29.8
Q ss_pred eEEEECCCCcEEEEEecCCCCceeecCCCCCHHHHHHHHHHHHHHh
Q 039696 35 RGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALAL 80 (210)
Q Consensus 35 rGVr~r~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~~l 80 (210)
.||++++.|.|+.+... .|+++.+|. |..+|..........+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877777899887665 445888996 8888877765544443
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=32.25 E-value=46 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=22.1
Q ss_pred CCceeEEEECCCCcEEEEEecC-CCCceeec
Q 039696 31 HPTYRGVRRRSSGKWVSEIREP-RKPTRIWL 60 (210)
Q Consensus 31 ~s~yrGVr~r~~gkW~A~I~~~-~k~~ri~L 60 (210)
..-+.|+++|+.|+|+.++... ++.+.||-
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~Gkr~~vYs 39 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSFGEPQFVYS 39 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CccCCCeEEccCCcEEEEEEcCCCCEEEEEe
Confidence 3456789999889999998875 55445553
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.84 E-value=26 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=21.2
Q ss_pred EEEEecCCCCceeecCCCCCHHHHHHHHHHHH
Q 039696 46 VSEIREPRKPTRIWLGTFATPEMAAIAYDVAA 77 (210)
Q Consensus 46 ~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa 77 (210)
.+.|...+.--|+++|.|.+.++|..+-+...
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 34443323335889999999999988765443
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=31.48 E-value=44 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=22.1
Q ss_pred EEEEecCCCCceeecCCCCCHHHHHHHHHHHH
Q 039696 46 VSEIREPRKPTRIWLGTFATPEMAAIAYDVAA 77 (210)
Q Consensus 46 ~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa 77 (210)
.+.|...+.-.|+.+|.|.+.++|..+-+...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 44554433345899999999999988765543
No 10
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=28.00 E-value=28 Score=24.66 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCceeEEEECCCCcEEEEEecCCCCceeecCCCCCHHHHHHH
Q 039696 30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIA 72 (210)
Q Consensus 30 ~~s~yrGVr~r~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~A 72 (210)
+--+||-|..-+ |||+|.+..... -..--.|..+|.|-|=
T Consensus 36 kmd~frdvw~lr-gkyvafvl~ge~--frrspafsvpesaqrw 75 (87)
T 2bn8_A 36 KMDSFRDVWMLR-GKYVAFVLMGES--FLRSPAFTVPESAQRW 75 (87)
T ss_dssp CTTTCTTEEEET-TEEEEBCCSSSC--CCBCCCBSSHHHHHHH
T ss_pred hcccchhheeec-cceEEEEEechh--hccCCccCCcHHHHHH
Confidence 445799997655 899999877432 2223467888877653
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=23.73 E-value=98 Score=21.96 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=28.7
Q ss_pred cEEEEEecCCCCceeecCCCCCHHHHHHHHHHHHH
Q 039696 44 KWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAAL 78 (210)
Q Consensus 44 kW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~ 78 (210)
.--|.|...++...+|.|...+..|-..|-+.|..
T Consensus 28 s~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~ 62 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44578888777788999999999999998887644
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=22.70 E-value=87 Score=22.78 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=26.9
Q ss_pred EEEEecCCCCceeecCCCCCHHHHHHHHHHHHH
Q 039696 46 VSEIREPRKPTRIWLGTFATPEMAAIAYDVAAL 78 (210)
Q Consensus 46 ~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~ 78 (210)
-|.|...++...+|.|...+..|-+.|-..|..
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~ 72 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467777777788999999999999888877654
No 13
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=21.22 E-value=1.2e+02 Score=22.74 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCceeecCCCCCHHHHHHHHHHHHHHhcC
Q 039696 44 KWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKG 82 (210)
Q Consensus 44 kW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~~l~G 82 (210)
.|+|.|.. ...-+-++...+.+.|..|...|+.+|-+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999976 22244466668899999999999887743
Done!