BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039697
         (54 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H7A|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
           Rhodopseudomonas Palustris
 pdb|3H7A|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
           Rhodopseudomonas Palustris
 pdb|3H7A|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
           Rhodopseudomonas Palustris
 pdb|3H7A|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
           Rhodopseudomonas Palustris
          Length = 252

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 23  WYGFMFGRESARKDLEH 39
           W GF+ GRESAR  L H
Sbjct: 116 WAGFVSGRESARLMLAH 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,270,031
Number of Sequences: 62578
Number of extensions: 24812
Number of successful extensions: 57
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 1
length of query: 54
length of database: 14,973,337
effective HSP length: 26
effective length of query: 28
effective length of database: 13,346,309
effective search space: 373696652
effective search space used: 373696652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)