Query 039697
Match_columns 54
No_of_seqs 10 out of 12
Neff 1.6
Searched_HMMs 46136
Date Fri Mar 29 12:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01708 typeII_sec_gspH gene 91.7 0.64 1.4E-05 28.1 4.8 44 2-45 3-50 (143)
2 COG2165 PulG Type II secretory 90.4 1.5 3.2E-05 24.6 5.2 21 1-21 6-26 (149)
3 PRK10506 hypothetical protein; 88.9 1.6 3.5E-05 27.7 5.1 30 2-31 8-37 (162)
4 PF00918 Gastrin: Gastrin/chol 88.1 0.099 2.2E-06 33.2 -0.8 12 24-35 99-111 (116)
5 PRK11469 hypothetical protein; 85.1 3.7 8.1E-05 27.3 5.4 27 5-31 131-157 (188)
6 PF10960 DUF2762: Protein of u 85.0 3.3 7.2E-05 24.7 4.7 28 6-33 4-31 (71)
7 TIGR01710 typeII_sec_gspG gene 83.7 4.6 0.0001 24.9 5.1 19 3-21 1-19 (134)
8 PF08846 DUF1816: Domain of un 81.8 0.35 7.6E-06 29.1 -0.4 30 20-49 21-50 (68)
9 TIGR01711 gspJ general secreti 81.3 6.4 0.00014 25.8 5.3 20 3-22 1-20 (192)
10 PF05440 MtrB: Tetrahydrometha 78.0 1.4 3.1E-05 28.1 1.4 18 11-30 70-87 (97)
11 PF12072 DUF3552: Domain of un 77.7 5.7 0.00012 26.2 4.3 29 10-38 2-30 (201)
12 PF14769 CLAMP: Flagellar C1a 77.6 8.9 0.00019 22.7 4.7 50 2-54 9-60 (101)
13 PRK00965 tetrahydromethanopter 76.7 1.1 2.5E-05 28.6 0.7 19 10-30 70-88 (96)
14 PRK10574 putative major pilin 76.2 12 0.00025 24.3 5.3 17 2-18 4-20 (146)
15 PF07963 N_methyl: Prokaryotic 73.8 3.8 8.3E-05 19.8 2.0 19 3-21 1-19 (20)
16 TIGR02532 IV_pilin_GFxxxE prep 73.6 4.5 9.8E-05 19.8 2.3 21 2-22 1-21 (26)
17 PRK14756 hypothetical protein; 72.1 6.3 0.00014 21.1 2.8 20 3-22 5-24 (29)
18 TIGR02840 spore_YtaF putative 70.7 8.4 0.00018 25.7 3.7 30 6-35 155-184 (206)
19 PRK13857 type IV secretion sys 69.9 12 0.00025 25.2 4.3 23 16-38 76-98 (120)
20 PF13544 N_methyl_2: Type IV p 69.7 6.2 0.00013 19.9 2.3 19 2-20 13-31 (31)
21 TIGR02596 Verrucomicrobium spi 69.6 17 0.00037 25.0 5.2 34 5-38 1-34 (195)
22 MTH00064 ND6 NADH dehydrogenas 69.3 7.7 0.00017 26.1 3.3 22 7-28 31-54 (151)
23 PF02659 DUF204: Domain of unk 65.3 20 0.00044 19.4 5.0 32 7-39 22-53 (67)
24 PF00672 HAMP: HAMP domain; I 64.6 6.5 0.00014 20.3 1.8 38 12-49 3-42 (70)
25 MTH00015 ND6 NADH dehydrogenas 63.4 12 0.00027 23.8 3.3 21 7-27 31-52 (155)
26 PRK12750 cpxP periplasmic repr 62.8 7.2 0.00016 25.8 2.2 22 1-23 3-24 (170)
27 PF09933 DUF2165: Predicted sm 61.7 18 0.00039 24.3 4.0 27 5-31 98-126 (160)
28 PF08570 DUF1761: Protein of u 61.4 16 0.00034 22.0 3.4 35 11-46 6-40 (126)
29 KOG3196 NADH:ubiquinone oxidor 61.3 8 0.00017 28.5 2.4 20 33-52 181-200 (233)
30 PF12165 DUF3594: Domain of un 61.0 8.4 0.00018 26.4 2.3 30 16-45 92-122 (137)
31 PF07624 PSD2: Protein of unkn 60.5 10 0.00022 21.7 2.3 33 17-49 25-60 (76)
32 MTH00166 ND6 NADH dehydrogenas 60.2 16 0.00035 23.2 3.4 22 7-28 29-52 (160)
33 PF05705 DUF829: Eukaryotic pr 58.9 44 0.00095 21.2 5.4 44 10-53 138-181 (240)
34 PF13150 DUF3989: Protein of u 57.7 10 0.00022 23.2 2.1 26 13-40 40-66 (85)
35 MTH00223 COX1 cytochrome c oxi 57.5 13 0.00028 28.7 3.1 27 12-39 382-408 (512)
36 TIGR03504 FimV_Cterm FimV C-te 56.7 9 0.0002 20.7 1.6 14 29-42 14-27 (44)
37 MTH00152 ND6 NADH dehydrogenas 56.4 20 0.00044 23.0 3.4 22 7-28 31-53 (163)
38 MTH00212 ND6 NADH dehydrogenas 55.8 20 0.00044 23.2 3.4 22 7-28 31-53 (160)
39 PF03062 MBOAT: MBOAT, membran 54.9 11 0.00024 24.3 2.1 26 4-29 239-264 (322)
40 COG1722 XseB Exonuclease VII s 54.5 14 0.0003 22.4 2.3 21 29-49 11-31 (81)
41 PF12910 RelB_N: Antitoxin of 53.2 9.6 0.00021 20.3 1.3 18 32-49 8-25 (46)
42 PF05402 PqqD: Coenzyme PQQ sy 53.0 18 0.00038 19.1 2.4 20 29-48 46-65 (68)
43 PF06252 DUF1018: Protein of u 53.0 18 0.0004 21.8 2.7 23 27-49 13-39 (119)
44 PF02405 Permease: Permease; 52.6 22 0.00047 24.0 3.2 24 6-29 160-183 (215)
45 KOG3342 Signal peptidase I [In 52.2 16 0.00034 26.1 2.6 29 1-29 14-43 (180)
46 PRK02119 hypothetical protein; 50.0 22 0.00047 20.8 2.6 15 32-46 41-55 (73)
47 PRK09784 hypothetical protein; 49.4 5.6 0.00012 30.9 -0.0 10 22-31 135-144 (417)
48 PRK14475 F0F1 ATP synthase sub 48.9 67 0.0015 20.3 5.5 24 6-30 11-34 (167)
49 PRK02793 phi X174 lysis protei 48.5 20 0.00043 20.9 2.2 12 34-45 42-53 (72)
50 PF02609 Exonuc_VII_S: Exonucl 48.5 25 0.00053 18.9 2.5 19 31-49 2-20 (53)
51 COG3381 TorD Uncharacterized c 47.8 24 0.00052 24.6 2.9 33 16-48 9-41 (204)
52 PHA00276 phage lambda Rz-like 47.8 18 0.00039 24.7 2.3 19 31-49 66-84 (144)
53 TIGR01903 cas_TM1808_csm4 CRIS 47.7 31 0.00067 24.0 3.5 32 12-47 17-48 (297)
54 PRK04406 hypothetical protein; 47.3 21 0.00045 21.1 2.2 14 33-46 44-57 (75)
55 MTH00037 COX1 cytochrome c oxi 47.0 16 0.00035 28.2 2.1 24 11-34 384-407 (517)
56 PF13800 Sigma_reg_N: Sigma fa 46.9 35 0.00077 19.7 3.2 25 2-26 8-32 (96)
57 PRK00295 hypothetical protein; 46.5 24 0.00051 20.3 2.4 13 33-45 38-50 (68)
58 TIGR02833 spore_III_AB stage I 46.1 74 0.0016 20.6 4.9 25 17-41 8-34 (170)
59 KOG2912 Predicted DNA methylas 45.8 5.3 0.00011 31.4 -0.6 24 23-49 245-268 (419)
60 PRK00080 ruvB Holliday junctio 45.4 25 0.00055 23.8 2.7 27 27-53 27-53 (328)
61 PRK00736 hypothetical protein; 45.0 29 0.00062 20.0 2.5 14 32-45 37-50 (68)
62 MTH00142 COX1 cytochrome c oxi 44.4 28 0.00061 26.9 3.1 27 12-39 383-409 (511)
63 PRK10404 hypothetical protein; 44.3 22 0.00047 22.0 2.1 18 28-45 5-22 (101)
64 PRK14068 exodeoxyribonuclease 43.8 32 0.00069 20.5 2.7 21 29-49 7-27 (76)
65 PF09335 SNARE_assoc: SNARE as 43.7 59 0.0013 18.1 5.0 27 7-33 16-42 (123)
66 PRK10557 hypothetical protein; 43.3 97 0.0021 20.6 5.6 19 2-20 6-24 (192)
67 PRK00846 hypothetical protein; 43.3 23 0.0005 21.5 2.1 14 33-46 46-59 (77)
68 MTH00167 COX1 cytochrome c oxi 43.0 40 0.00086 25.9 3.7 24 12-35 385-408 (512)
69 PRK10332 hypothetical protein; 42.8 38 0.00081 21.8 3.1 18 2-19 8-25 (107)
70 PRK08307 stage III sporulation 42.6 94 0.002 20.2 5.0 25 17-41 9-35 (171)
71 PLN03100 Permease subunit of E 42.5 25 0.00054 25.6 2.4 24 5-28 233-256 (292)
72 PRK02166 hypothetical protein; 42.3 31 0.00068 23.2 2.8 14 33-46 122-135 (184)
73 PRK14064 exodeoxyribonuclease 42.2 35 0.00076 20.2 2.7 21 30-50 8-28 (75)
74 MTH00116 COX1 cytochrome c oxi 41.9 34 0.00074 26.4 3.2 27 12-39 385-411 (515)
75 PF03533 SPO11_like: SPO11 hom 41.7 21 0.00046 20.5 1.6 15 38-52 20-34 (43)
76 COG1971 Predicted membrane pro 41.3 51 0.0011 23.1 3.7 22 9-30 137-158 (190)
77 PF03945 Endotoxin_N: delta en 41.3 91 0.002 19.7 4.9 29 4-32 4-39 (226)
78 PF04917 Shufflon_N: Bacterial 41.2 1.2E+02 0.0026 22.4 5.9 30 2-31 5-34 (356)
79 PF02667 SCFA_trans: Short cha 40.3 26 0.00057 27.2 2.4 29 8-36 95-131 (453)
80 PRK10077 xylE D-xylose transpo 39.6 46 0.001 22.1 3.2 32 15-46 443-474 (479)
81 PF08656 DASH_Dad3: DASH compl 39.5 27 0.00059 21.4 1.9 21 1-21 46-66 (78)
82 TIGR02523 type_IV_pilV type IV 39.3 1E+02 0.0022 19.7 5.6 46 2-47 1-57 (139)
83 PF10810 DUF2545: Protein of u 39.1 24 0.00052 22.5 1.7 14 14-27 23-36 (80)
84 PHA02554 13 neck protein; Prov 39.1 33 0.00072 26.0 2.7 22 31-52 286-307 (311)
85 COG2956 Predicted N-acetylgluc 38.8 28 0.00061 27.2 2.4 27 19-45 10-36 (389)
86 PF08154 NLE: NLE (NUC135) dom 38.5 41 0.00088 18.8 2.5 15 31-45 25-39 (65)
87 PRK09855 PTS system N-acetylga 38.4 97 0.0021 22.1 4.9 30 17-47 147-176 (263)
88 PHA03171 UL37 tegument protein 38.2 57 0.0012 26.4 4.0 30 11-46 452-481 (499)
89 PRK14066 exodeoxyribonuclease 38.1 44 0.00096 19.8 2.7 19 31-49 7-25 (75)
90 TIGR01552 phd_fam prevent-host 38.1 42 0.00091 17.1 2.3 18 31-48 5-22 (52)
91 MTH00183 COX1 cytochrome c oxi 38.0 43 0.00094 25.8 3.2 27 13-40 386-412 (516)
92 PRK14422 acylphosphatase; Prov 37.8 24 0.00051 21.1 1.5 18 33-51 53-70 (93)
93 smart00857 Resolvase Resolvase 37.3 27 0.00058 20.2 1.6 15 34-48 51-65 (148)
94 PRK14420 acylphosphatase; Prov 37.1 24 0.00052 20.6 1.4 15 33-47 49-63 (91)
95 TIGR02260 benz_CoA_red_B benzo 37.1 57 0.0012 24.0 3.6 21 26-46 228-248 (413)
96 KOG2572 Ribosome biogenesis pr 37.0 23 0.00051 28.5 1.7 18 20-43 181-198 (498)
97 cd02433 Nodulin-21_like_2 Nodu 36.9 55 0.0012 22.6 3.3 25 5-29 210-234 (234)
98 TIGR01280 xseB exodeoxyribonuc 36.6 50 0.0011 19.0 2.7 20 30-49 3-22 (67)
99 smart00875 BACK BTB And C-term 36.6 59 0.0013 17.0 2.8 30 15-47 61-90 (101)
100 MTH00079 COX1 cytochrome c oxi 36.3 40 0.00086 26.0 2.8 23 11-33 384-406 (508)
101 PF07167 PhaC_N: Poly-beta-hyd 36.3 43 0.00094 23.0 2.8 22 29-50 80-101 (172)
102 cd03769 SR_IS607_transposase_l 36.1 23 0.0005 21.6 1.3 20 29-48 43-62 (134)
103 PF09548 Spore_III_AB: Stage I 36.0 1.2E+02 0.0025 19.4 5.1 18 18-35 9-26 (170)
104 PRK14431 acylphosphatase; Prov 35.8 35 0.00075 20.3 2.0 17 34-50 49-65 (89)
105 PF04290 DctQ: Tripartite ATP- 35.7 79 0.0017 18.0 3.4 23 3-26 63-85 (133)
106 TIGR02122 TRAP_TAXI TRAP trans 35.7 47 0.001 21.1 2.7 23 1-23 1-23 (320)
107 COG4968 PilE Tfp pilus assembl 35.4 38 0.00082 23.0 2.3 27 1-27 4-35 (139)
108 TIGR01707 gspI general secreti 35.3 41 0.0009 20.4 2.3 18 4-21 1-18 (101)
109 TIGR00366 conserved hypothetic 35.3 32 0.00068 26.6 2.1 29 8-36 92-128 (438)
110 PRK14063 exodeoxyribonuclease 35.2 52 0.0011 19.4 2.7 20 30-49 7-26 (76)
111 PF12646 DUF3783: Domain of un 35.0 44 0.00096 18.4 2.2 20 33-52 10-29 (58)
112 PRK09546 zntB zinc transporter 34.4 34 0.00075 23.4 2.0 24 4-29 266-289 (324)
113 cd03770 SR_TndX_transposase Se 34.4 25 0.00054 21.3 1.2 17 32-48 52-68 (140)
114 PRK14067 exodeoxyribonuclease 34.3 55 0.0012 19.7 2.7 21 29-49 8-28 (80)
115 PF09719 C_GCAxxG_C_C: Putativ 34.1 92 0.002 18.3 3.6 32 14-45 40-75 (120)
116 PRK00977 exodeoxyribonuclease 33.9 57 0.0012 19.3 2.7 21 29-49 11-31 (80)
117 TIGR02610 PHA_gran_rgn putativ 33.8 40 0.00087 20.5 2.1 19 28-46 12-30 (91)
118 COG1961 PinR Site-specific rec 33.7 25 0.00054 22.5 1.2 15 34-48 50-64 (222)
119 PF00482 T2SF: Type II secreti 33.7 45 0.00097 17.7 2.0 17 33-49 31-47 (124)
120 PRK14427 acylphosphatase; Prov 33.5 29 0.00062 20.7 1.4 18 34-52 54-71 (94)
121 PF13721 SecD-TM1: SecD export 33.5 43 0.00092 20.4 2.1 19 7-25 11-29 (101)
122 PF05726 Pirin_C: Pirin C-term 33.1 34 0.00074 20.0 1.6 17 32-48 86-102 (104)
123 TIGR02209 ftsL_broad cell divi 33.0 89 0.0019 17.2 5.8 35 3-40 2-36 (85)
124 TIGR00635 ruvB Holliday juncti 32.9 59 0.0013 21.2 2.9 27 27-53 6-32 (305)
125 PF06103 DUF948: Bacterial pro 32.8 98 0.0021 17.5 5.2 35 12-46 4-40 (90)
126 PRK06531 yajC preprotein trans 32.7 1.1E+02 0.0023 19.6 4.0 26 23-49 16-42 (113)
127 PF04956 TrbC: TrbC/VIRB2 fami 32.5 98 0.0021 17.5 4.2 23 15-37 58-80 (99)
128 PF04612 T2SM: Type II secreti 32.5 15 0.00032 22.2 0.0 34 11-44 19-57 (160)
129 COG3411 Ferredoxin [Energy pro 32.5 34 0.00073 20.6 1.5 31 22-53 27-63 (64)
130 PRK03001 M48 family peptidase; 32.4 74 0.0016 21.7 3.4 39 11-49 34-81 (283)
131 PF10319 7TM_GPCR_Srj: Serpent 32.4 41 0.00089 24.9 2.3 28 7-34 249-278 (310)
132 PF09650 PHA_gran_rgn: Putativ 32.2 44 0.00096 19.9 2.0 20 28-47 9-28 (87)
133 PRK14434 acylphosphatase; Prov 32.1 40 0.00086 20.1 1.8 17 35-51 53-69 (92)
134 COG0290 InfC Translation initi 32.0 22 0.00048 25.0 0.8 13 27-39 127-139 (176)
135 COG3272 Uncharacterized conser 31.9 44 0.00094 23.5 2.2 18 33-50 105-122 (163)
136 PRK13925 rnhB ribonuclease HII 31.8 27 0.00058 23.6 1.1 45 6-53 130-186 (198)
137 COG2031 AtoE Short chain fatty 31.8 35 0.00076 27.1 1.9 28 9-36 96-131 (446)
138 COG0465 HflB ATP-dependent Zn 31.8 36 0.00078 27.2 2.0 20 29-48 154-173 (596)
139 COG1458 Predicted DNA-binding 31.8 39 0.00084 24.8 2.0 18 29-46 131-148 (221)
140 TIGR00056 conserved hypothetic 31.7 47 0.001 23.5 2.4 24 5-28 200-223 (259)
141 smart00685 DM14 Repeats in fly 31.4 57 0.0012 19.0 2.4 15 35-49 35-49 (59)
142 PRK12291 apolipoprotein N-acyl 31.4 77 0.0017 23.2 3.5 23 8-30 42-70 (418)
143 PRK01736 hypothetical protein; 31.4 77 0.0017 21.1 3.3 28 19-46 102-137 (190)
144 PRK14069 exodeoxyribonuclease 31.3 63 0.0014 20.4 2.7 21 30-50 10-30 (95)
145 MTH00007 COX1 cytochrome c oxi 31.2 28 0.0006 26.8 1.3 21 14-34 384-404 (511)
146 PLN00180 NDF6 (NDH-dependent f 31.2 41 0.00089 24.0 2.0 15 31-45 149-165 (180)
147 cd07182 RNaseH_typeII_bacteria 31.2 31 0.00067 22.6 1.3 45 6-53 115-171 (179)
148 PF08349 DUF1722: Protein of u 30.8 54 0.0012 19.8 2.3 19 31-49 68-86 (117)
149 PF14412 AHH: A nuclease famil 30.5 63 0.0014 18.6 2.5 24 25-48 86-109 (109)
150 PF07264 EI24: Etoposide-induc 30.4 1.4E+02 0.003 18.5 4.5 33 14-46 159-192 (219)
151 COG0219 CspR Predicted rRNA me 30.4 9.3 0.0002 26.2 -1.3 8 26-33 99-106 (155)
152 PF04755 PAP_fibrillin: PAP_fi 30.3 61 0.0013 20.1 2.5 22 29-50 20-41 (198)
153 PRK10167 hypothetical protein; 30.2 52 0.0011 22.1 2.3 17 34-50 112-128 (169)
154 PF11871 DUF3391: Domain of un 30.2 70 0.0015 18.5 2.6 19 31-49 102-120 (128)
155 PF14654 Epiglycanin_C: Mucin, 30.1 66 0.0014 21.3 2.8 19 5-23 23-41 (106)
156 PF07596 SBP_bac_10: Protein o 29.8 25 0.00055 22.3 0.7 6 30-35 4-9 (265)
157 PRK14426 acylphosphatase; Prov 29.7 40 0.00086 19.9 1.5 19 33-51 51-69 (92)
158 PF05817 Ribophorin_II: Oligos 29.6 83 0.0018 24.9 3.7 30 4-33 604-633 (636)
159 cd03767 SR_Res_par Serine reco 29.5 30 0.00066 21.2 1.0 20 29-48 42-61 (146)
160 PRK09481 sspA stringent starva 29.4 72 0.0016 19.8 2.7 31 17-47 180-210 (211)
161 PLN02738 carotene beta-ring hy 29.2 14 0.0003 28.1 -0.7 12 17-28 122-133 (633)
162 PF00950 ABC-3: ABC 3 transpor 29.2 84 0.0018 21.5 3.2 25 6-30 209-233 (257)
163 PF07051 OCIA: Ovarian carcino 29.0 85 0.0018 20.5 3.1 23 24-46 84-106 (111)
164 TIGR01909 C_GCAxxG_C_C C_GCAxx 28.8 93 0.002 19.1 3.1 12 14-25 45-56 (120)
165 MTH00077 COX1 cytochrome c oxi 28.6 70 0.0015 24.7 3.1 25 15-40 388-412 (514)
166 COG3744 PIN domain nuclease, a 28.3 10 0.00022 25.2 -1.3 18 6-23 27-44 (130)
167 cd00338 Ser_Recombinase Serine 28.3 54 0.0012 18.5 1.9 16 33-48 50-65 (137)
168 PF00499 Oxidored_q3: NADH-ubi 28.3 91 0.002 17.8 2.9 22 7-28 21-43 (144)
169 MTH00103 COX1 cytochrome c oxi 28.0 64 0.0014 25.0 2.7 23 12-34 385-407 (513)
170 PRK13926 ribonuclease HII; Pro 28.0 32 0.0007 23.5 1.0 32 6-37 136-179 (207)
171 PF13602 ADH_zinc_N_2: Zinc-bi 27.9 19 0.0004 20.2 -0.1 34 19-52 63-99 (127)
172 PTZ00319 NADH-cytochrome B5 re 27.8 33 0.00072 23.4 1.1 14 20-33 12-25 (300)
173 KOG4682 Uncharacterized conser 27.6 8.5 0.00018 30.8 -2.1 10 22-31 372-381 (488)
174 TIGR02887 spore_ger_x_C germin 27.5 27 0.00059 23.9 0.6 24 26-49 98-121 (371)
175 PF04768 DUF619: Protein of un 27.3 19 0.00042 23.8 -0.1 20 22-46 150-169 (170)
176 PRK10878 hypothetical protein; 27.0 59 0.0013 19.3 1.9 26 24-49 39-65 (72)
177 cd07989 LPLAT_AGPAT-like Lysop 26.7 45 0.00097 19.7 1.4 34 15-48 61-98 (184)
178 PF13356 DUF4102: Domain of un 26.6 63 0.0014 18.2 1.9 21 30-50 60-80 (89)
179 PLN02150 terpene synthase/cycl 26.6 59 0.0013 19.6 1.9 16 29-44 20-35 (96)
180 TIGR02163 napH_ ferredoxin-typ 26.4 1.2E+02 0.0026 20.6 3.5 27 4-30 45-79 (255)
181 TIGR00383 corA magnesium Mg(2+ 26.1 71 0.0015 21.3 2.4 25 3-29 259-283 (318)
182 PF12354 Internalin_N: Bacteri 25.9 23 0.00049 20.3 0.0 27 5-31 4-30 (57)
183 PF15151 RGCC: Response gene t 25.5 48 0.001 22.4 1.5 14 34-47 104-117 (121)
184 PRK09467 envZ osmolarity senso 25.5 2.1E+02 0.0045 19.0 6.3 36 14-49 159-196 (435)
185 KOG3259 Peptidyl-prolyl cis-tr 25.4 66 0.0014 22.7 2.2 21 29-49 81-101 (163)
186 PRK08808 general secretion pat 25.2 2.3E+02 0.005 19.4 5.2 16 2-17 6-21 (211)
187 PF09247 TBP-binding: TATA box 25.1 28 0.00061 21.0 0.3 7 24-30 14-20 (62)
188 PF03245 Phage_lysis: Bacterio 25.0 78 0.0017 19.8 2.3 19 31-49 45-63 (125)
189 PF07606 DUF1569: Protein of u 24.9 1.1E+02 0.0024 19.4 3.0 24 31-54 100-124 (152)
190 PF10056 DUF2293: Uncharacteri 24.8 68 0.0015 19.6 2.0 19 28-46 65-83 (86)
191 KOG0059 Lipid exporter ABCA1 a 24.8 53 0.0011 26.3 1.8 18 32-49 732-749 (885)
192 PTZ00413 lipoate synthase; Pro 24.7 29 0.00062 26.8 0.4 26 24-49 299-324 (398)
193 PF04356 DUF489: Protein of un 24.6 73 0.0016 22.1 2.3 14 9-22 2-15 (193)
194 PTZ00443 Thioredoxin domain-co 24.6 1.2E+02 0.0026 20.7 3.3 22 12-33 177-198 (224)
195 PF15168 TRIQK: Triple QxxK/R 24.5 87 0.0019 19.8 2.4 18 13-30 55-72 (79)
196 PRK09835 sensor kinase CusS; P 24.4 2.2E+02 0.0048 19.0 5.1 8 19-26 29-36 (482)
197 PRK09877 2,3-diketo-L-gulonate 24.1 1.8E+02 0.004 17.9 3.9 25 5-30 80-104 (157)
198 PF06464 DMAP_binding: DMAP1-b 24.0 78 0.0017 19.5 2.2 18 31-48 7-24 (111)
199 PRK01265 heat shock protein Ht 23.9 1.4E+02 0.0031 21.7 3.7 39 11-49 48-97 (324)
200 PRK15041 methyl-accepting chem 23.8 3E+02 0.0065 20.2 6.3 32 18-49 206-237 (554)
201 COG4795 PulJ Type II secretory 23.6 84 0.0018 21.6 2.4 19 4-22 8-26 (194)
202 PF13291 ACT_4: ACT domain; PD 23.6 68 0.0015 17.2 1.6 14 34-47 59-72 (80)
203 PRK14789 lipoprotein signal pe 23.6 1.2E+02 0.0025 20.8 3.1 40 12-53 135-178 (191)
204 PF00421 PSII: Photosystem II 23.6 88 0.0019 24.7 2.8 40 8-47 240-289 (437)
205 cd04877 ACT_TyrR N-terminal AC 23.4 74 0.0016 17.1 1.8 16 33-48 47-62 (74)
206 PF06645 SPC12: Microsomal sig 23.4 1.2E+02 0.0026 17.7 2.8 15 15-29 18-32 (76)
207 cd01833 XynB_like SGNH_hydrola 23.3 85 0.0018 18.0 2.1 21 29-49 58-78 (157)
208 PRK14429 acylphosphatase; Prov 23.2 54 0.0012 19.2 1.3 15 33-47 49-63 (90)
209 PRK00218 putative lysogenizati 23.2 1E+02 0.0023 21.6 2.9 21 1-22 1-21 (207)
210 TIGR01241 FtsH_fam ATP-depende 23.1 3E+02 0.0066 20.0 5.5 18 29-46 59-76 (495)
211 PF12390 Se-cys_synth_N: Selen 23.0 85 0.0018 16.1 1.9 18 28-45 23-40 (40)
212 PF07577 DUF1547: Domain of Un 23.0 80 0.0017 18.6 1.9 17 34-50 25-41 (58)
213 PF03327 Herpes_VP19C: Herpesv 22.9 1.8E+02 0.0039 20.7 4.1 32 12-47 61-92 (270)
214 PF08628 Nexin_C: Sorting nexi 22.9 1.7E+02 0.0037 17.1 3.8 34 13-46 77-110 (113)
215 KOG1440 CDP-diacylglycerol syn 22.8 39 0.00085 26.6 0.8 12 20-31 235-246 (432)
216 cd04881 ACT_HSDH-Hom ACT_HSDH_ 22.7 67 0.0014 15.9 1.4 17 31-47 50-66 (79)
217 TIGR02161 napC_nirT periplasmi 22.6 1.8E+02 0.0039 19.6 3.8 21 10-30 19-39 (185)
218 cd06550 TM_ABC_iron-siderophor 22.6 1.2E+02 0.0025 20.0 2.9 26 6-31 212-237 (261)
219 PF14811 TPD: Protein of unkno 22.5 7.5 0.00016 25.8 -2.8 10 18-27 113-122 (139)
220 PLN02777 photosystem I P subun 22.3 2.2E+02 0.0047 20.0 4.3 27 21-47 135-162 (167)
221 COG3607 Predicted lactoylgluta 21.9 21 0.00046 24.3 -0.7 8 24-31 106-113 (133)
222 PF04740 LXG: LXG domain of WX 21.9 89 0.0019 19.5 2.1 24 25-48 142-165 (204)
223 PRK10987 regulatory protein Am 21.7 99 0.0021 21.5 2.5 22 27-48 81-102 (284)
224 PLN02448 UDP-glycosyltransfera 21.6 74 0.0016 23.1 1.9 16 32-47 443-458 (459)
225 PRK04325 hypothetical protein; 21.6 1E+02 0.0022 17.9 2.2 13 33-45 42-54 (74)
226 PRK13413 mpi multiple promoter 21.5 58 0.0013 20.6 1.3 16 33-48 48-63 (200)
227 cd01827 sialate_O-acetylestera 21.4 1.1E+02 0.0024 18.0 2.3 20 30-49 88-107 (188)
228 PF07295 DUF1451: Protein of u 21.3 1.5E+02 0.0033 19.4 3.2 28 21-48 73-100 (146)
229 COG2900 SlyX Uncharacterized p 21.2 1.3E+02 0.0027 18.6 2.7 19 31-49 39-57 (72)
230 PF08040 NADH_oxidored: MNLL s 21.1 1.3E+02 0.0027 18.1 2.6 25 5-31 2-26 (59)
231 cd04501 SGNH_hydrolase_like_4 21.0 1.5E+02 0.0031 17.5 2.8 21 29-49 77-97 (183)
232 smart00755 Grip golgin-97, Ran 21.0 1E+02 0.0022 16.9 2.0 22 23-44 11-32 (46)
233 COG2715 SpmA Uncharacterized m 20.9 81 0.0018 22.9 2.0 17 15-31 43-59 (206)
234 PF00669 Flagellin_N: Bacteria 20.9 1.1E+02 0.0023 18.0 2.2 17 29-45 104-120 (139)
235 PLN02676 polyamine oxidase 20.9 83 0.0018 23.1 2.1 26 22-47 450-476 (487)
236 MTH00045 ND6 NADH dehydrogenas 20.9 1.7E+02 0.0036 19.0 3.3 21 7-27 31-52 (162)
237 MTH00048 COX1 cytochrome c oxi 20.9 98 0.0021 24.1 2.6 23 12-34 384-406 (511)
238 COG0395 UgpE ABC-type sugar tr 20.8 1.3E+02 0.0028 21.2 2.9 20 10-29 199-218 (281)
239 PLN02428 lipoic acid synthase 20.7 35 0.00075 25.2 0.1 28 22-49 249-276 (349)
240 PRK06760 hypothetical protein; 20.7 52 0.0011 23.9 1.0 39 1-41 1-49 (223)
241 PF10589 NADH_4Fe-4S: NADH-ubi 20.6 54 0.0012 17.5 0.8 15 36-50 28-42 (46)
242 PF11213 DUF3006: Protein of u 20.6 1.1E+02 0.0024 17.2 2.2 17 30-46 55-71 (71)
243 PF01122 Cobalamin_bind: Eukar 20.5 1.8E+02 0.004 21.6 3.8 36 9-46 187-222 (326)
244 COG0738 FucP Fucose permease [ 20.5 1.1E+02 0.0024 23.8 2.8 16 15-30 274-289 (422)
245 PRK10633 hypothetical protein; 20.5 2.1E+02 0.0047 17.5 3.6 18 16-33 19-36 (80)
246 PLN02976 amine oxidase 20.4 89 0.0019 28.6 2.5 29 21-49 1162-1191(1713)
247 PF10883 DUF2681: Protein of u 20.4 2.3E+02 0.0049 17.6 5.3 28 12-41 9-36 (87)
248 KOG0055 Multidrug/pheromone ex 20.4 1.3E+02 0.0027 26.5 3.3 23 6-28 788-810 (1228)
249 PF04186 FxsA: FxsA cytoplasmi 20.2 2.3E+02 0.005 17.6 6.3 26 25-50 38-63 (119)
250 PRK10294 6-phosphofructokinase 20.2 1.2E+02 0.0026 19.8 2.6 39 4-45 269-308 (309)
251 PRK14443 acylphosphatase; Prov 20.1 75 0.0016 19.3 1.5 16 34-49 52-67 (93)
252 cd01834 SGNH_hydrolase_like_2 20.0 1.6E+02 0.0034 16.9 2.8 18 29-46 83-100 (191)
No 1
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=91.74 E-value=0.64 Score=28.06 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHh
Q 039697 2 EKRFSLIQTIATAAAFSAVTAWYGFMFG----RESARKDLEHLIEDLK 45 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs~WYGFMfG----RESaRkeL~~lIedLr 45 (54)
++.|||+..+.+-.+++.++..--..+. +-..+++..++..+|+
T Consensus 3 ~~GFTLiEllvvlaIiail~~~~~~~~~~~~~~~~~~~~a~~l~~~l~ 50 (143)
T TIGR01708 3 QSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLR 50 (143)
T ss_pred CCcEEHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 5789999988777766655544434433 3344444444444443
No 2
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.43 E-value=1.5 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=15.2
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 039697 1 MEKRFSLIQTIATAAAFSAVT 21 (54)
Q Consensus 1 m~k~~tL~QTvatagvFSAvs 21 (54)
+++.||||..+..-.+++.++
T Consensus 6 ~qrGFTLiElLVvl~Iigil~ 26 (149)
T COG2165 6 KQRGFTLIELLVVLAIIGILA 26 (149)
T ss_pred ccCCcchHHHHHHHHHHHHHH
Confidence 357899999887766666544
No 3
>PRK10506 hypothetical protein; Provisional
Probab=88.92 E-value=1.6 Score=27.70 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=22.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697 2 EKRFSLIQTIATAAAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs~WYGFMfGRE 31 (54)
++.|||+.++.+-.+.+.+..+-..-|..-
T Consensus 8 ~~GFTLiEllvvl~Ii~il~~~a~p~~~~~ 37 (162)
T PRK10506 8 QRGYTLIELLVVMTIVSILSAWGLYGWQRW 37 (162)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999888888877776655555543
No 4
>PF00918 Gastrin: Gastrin/cholecystokinin family; InterPro: IPR001651 Gastrin and cholecystokinin (CCK) are structurally and functionally related peptide hormones that function as hormonal regulators of various digestive processes and feeding behaviors. They are known to induce gastric secretion, stimulate pancreatic secretion, increase blood circulation and water secretion in the stomach and intestine, and stimulate smooth muscle contraction. Originally found in the gut, these hormones have since been shown to be present in various parts of the nervous system. Like many other active peptides they are synthesized as larger protein precursors that are enzymatically converted to their mature forms. They are found in several molecular forms due to tissue-specific post-translational processing. The biological activity of gastrin and CCK is associated with the last five C-terminal residues. One or two positions downstream, there is a conserved sulphated tyrosine residue. The amphibian caerulein skin peptide, the cockroach leukosulphakinin I and II (LSK) peptides, Drosophila melanogaster (Fruit fly) putative CCK-homologs Drosulphakinins I and II, cionin, a Gallus gallus (Chicken) gastrin/cholecystokinin-like peptide and cionin, a neuropeptide from the protochordate Ciona intestinalis belong to the same family.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=88.07 E-value=0.099 Score=33.21 Aligned_cols=12 Identities=58% Similarity=1.088 Sum_probs=9.6
Q ss_pred HHHH-hhhhhHHH
Q 039697 24 YGFM-FGRESARK 35 (54)
Q Consensus 24 YGFM-fGRESaRk 35 (54)
.|+| |||-||..
T Consensus 99 ~GWMDFGRRSAEE 111 (116)
T PF00918_consen 99 MGWMDFGRRSAEE 111 (116)
T ss_pred Ccccccccccccc
Confidence 3988 99999853
No 5
>PRK11469 hypothetical protein; Provisional
Probab=85.05 E-value=3.7 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfGRE 31 (54)
+..+.|....|+++.+.+|-|+..||-
T Consensus 131 ~~~~~~~~~ig~~s~~~~~~G~~lG~~ 157 (188)
T PRK11469 131 VNIIATALAIGCATLIMSTLGMMVGRF 157 (188)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999993
No 6
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=84.97 E-value=3.3 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMFGRESA 33 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMfGRESa 33 (54)
.+++.+++=|+|++..+|-=|-.=++|-
T Consensus 4 ei~k~~~sQG~fA~LFv~Ll~yvlK~~~ 31 (71)
T PF10960_consen 4 EIIKLALSQGIFAVLFVWLLFYVLKENK 31 (71)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHhH
Confidence 3678889999999999999998888887
No 7
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=83.65 E-value=4.6 Score=24.90 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 039697 3 KRFSLIQTIATAAAFSAVT 21 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs 21 (54)
|.|||+..+..-.+++.+.
T Consensus 1 ~GFTLiEllivlaIigil~ 19 (134)
T TIGR01710 1 RGFTLLEIMVVLVILGLLA 19 (134)
T ss_pred CceeHHHHHHHHHHHHHHH
Confidence 4699999877766665553
No 8
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=81.80 E-value=0.35 Score=29.12 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 20 VTAWYGFMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 20 vs~WYGFMfGRESaRkeL~~lIedLr~g~~ 49 (54)
+.+|||=...+++|...+.+-||||.+-++
T Consensus 21 ctYyFGPF~s~~eA~~~~~gyieDL~~Ega 50 (68)
T PF08846_consen 21 CTYYFGPFDSREEAEAALPGYIEDLESEGA 50 (68)
T ss_pred EEEEeCCcCCHHHHHHHhccHHHHHHhhCc
Confidence 457899999999999999999999998655
No 9
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=81.28 E-value=6.4 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 039697 3 KRFSLIQTIATAAAFSAVTA 22 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs~ 22 (54)
+.||||+.+.+-++|+.++.
T Consensus 1 ~GFTLiEllval~I~ail~~ 20 (192)
T TIGR01711 1 RGFTLLELLVAIAIFASLSL 20 (192)
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 57999999988888887764
No 10
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=77.97 E-value=1.4 Score=28.15 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 039697 11 IATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGR 30 (54)
-.+||.|.. +||||.+|-
T Consensus 70 ~~~AG~~tn--~fyGf~igL 87 (97)
T PF05440_consen 70 YYIAGIFTN--MFYGFIIGL 87 (97)
T ss_pred eeehhhhhh--HHHHHHHHH
Confidence 356888874 799999984
No 11
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=77.69 E-value=5.7 Score=26.17 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 039697 10 TIATAAAFSAVTAWYGFMFGRESARKDLE 38 (54)
Q Consensus 10 TvatagvFSAvs~WYGFMfGRESaRkeL~ 38 (54)
+|.++.++.+|+++-||.+.+-..++.+.
T Consensus 2 ~ii~~i~~~~vG~~~G~~~~~~~~~~~~~ 30 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLVRKKINRKKLE 30 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999998765554443
No 12
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=77.60 E-value=8.9 Score=22.71 Aligned_cols=50 Identities=26% Similarity=0.257 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCC
Q 039697 2 EKRFSLIQTIATAAAFSAVT--AWYGFMFGRESARKDLEHLIEDLKRGNSPPPHS 54 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs--~WYGFMfGRESaRkeL~~lIedLr~g~~~~phs 54 (54)
+++||..|+.+.-.+.-.+- ++. =....|.+-+++++++ ++.+...||++
T Consensus 9 ~~~fs~~q~s~~~~i~~~ll~~~i~-~~~~~~~~~~~fk~~l--~~~sv~rpp~~ 60 (101)
T PF14769_consen 9 EQGFSWEQTSAFLSILKELLEKNIE-KGMSLEDSFKYFKELL--LRHSVQRPPFS 60 (101)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHH--HHhccCCCCcc
Confidence 46788888877666544332 344 4456788888898888 56666667664
No 13
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=76.65 E-value=1.1 Score=28.56 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039697 10 TIATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 10 TvatagvFSAvs~WYGFMfGR 30 (54)
|-.+||.|. .+||||.+|-
T Consensus 70 ~~~~AG~~t--n~fyGf~igL 88 (96)
T PRK00965 70 TYYIAGIFT--NMFYGFWIGL 88 (96)
T ss_pred eeeehhhhh--HHHHHHHHHH
Confidence 345788887 4799999884
No 14
>PRK10574 putative major pilin subunit; Provisional
Probab=76.25 E-value=12 Score=24.33 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=10.9
Q ss_pred cchhHHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAFS 18 (54)
Q Consensus 2 ~k~~tL~QTvatagvFS 18 (54)
+|.||||+.+..-++++
T Consensus 4 q~GFTLIELmIViaIig 20 (146)
T PRK10574 4 QRGFTLIELMVVIAIIA 20 (146)
T ss_pred cCceeHHHHHHHHHHHH
Confidence 57899998654444433
No 15
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=73.75 E-value=3.8 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 039697 3 KRFSLIQTIATAAAFSAVT 21 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs 21 (54)
|.|||+..+.+-.+++.++
T Consensus 1 ~GFTLiE~~v~l~i~~i~~ 19 (20)
T PF07963_consen 1 KGFTLIELLVALAIIAILA 19 (20)
T ss_pred CceeHHHHHHHHHHHHHHh
Confidence 6799999998888877654
No 16
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=73.62 E-value=4.5 Score=19.77 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=16.8
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAFSAVTA 22 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs~ 22 (54)
+|.|||++.+.+-.+++.+..
T Consensus 1 ~~GfTLiEllial~i~~i~~~ 21 (26)
T TIGR02532 1 QRGFTLIELLVVLAILGILAA 21 (26)
T ss_pred CCceeHHHHHHHHHHHHHHHH
Confidence 578999999988877776654
No 17
>PRK14756 hypothetical protein; Provisional
Probab=72.14 E-value=6.3 Score=21.13 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 039697 3 KRFSLIQTIATAAAFSAVTA 22 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs~ 22 (54)
-||||+-||..-++.-|.|+
T Consensus 5 LK~SL~tTvvaL~~Iva~~~ 24 (29)
T PRK14756 5 LKFSLVTTIIVLGLIVAVGL 24 (29)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 37999999999888877765
No 18
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=70.66 E-value=8.4 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMFGRESARK 35 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMfGRESaRk 35 (54)
..+.|+...|+.+.+.+|.|+..||--.++
T Consensus 155 ~~~~~~~~igivs~i~~~~G~~lG~~~~~~ 184 (206)
T TIGR02840 155 NPLATSILVAVMSFIFVSLGLFLGKKISKK 184 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999975543
No 19
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=69.91 E-value=12 Score=25.17 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Q 039697 16 AFSAVTAWYGFMFGRESARKDLE 38 (54)
Q Consensus 16 vFSAvs~WYGFMfGRESaRkeL~ 38 (54)
+...+..=++|||||=|-|+-..
T Consensus 76 ~LAVI~vG~swmfGrldl~~a~~ 98 (120)
T PRK13857 76 VLGIVAIGISWMFGRASLGLVAG 98 (120)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445567889999999887543
No 20
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=69.67 E-value=6.2 Score=19.91 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=10.9
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAFSAV 20 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAv 20 (54)
++.|||+..+.+-.+++.+
T Consensus 13 ~~GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 13 QRGFTLIELLVAMAILAIL 31 (31)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHC
Confidence 4689999998887777643
No 21
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=69.59 E-value=17 Score=25.03 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFGRESARKDLE 38 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfGRESaRkeL~ 38 (54)
|||+..+..-.+++.++..-...|..-..+.+|.
T Consensus 1 FTLIELLVVLaIiaILaaia~P~l~~~~~~~~L~ 34 (195)
T TIGR02596 1 FTLVELLVVIAIIAVLMALSTPVVNQVLAAQQLG 34 (195)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6787776665555555544444444433333333
No 22
>MTH00064 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=69.32 E-value=7.7 Score=26.15 Aligned_cols=22 Identities=14% Similarity=0.540 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHh
Q 039697 7 LIQTIATAAAFSA--VTAWYGFMF 28 (54)
Q Consensus 7 L~QTvatagvFSA--vs~WYGFMf 28 (54)
++||+.++...+. .+.||++++
T Consensus 31 i~~tl~~s~~i~~~~~ssWysyiL 54 (151)
T MTH00064 31 VVNSLISSLICYLVYGFSWYSLLF 54 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4899999988765 467999875
No 23
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=65.32 E-value=20 Score=19.42 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 039697 7 LIQTIATAAAFSAVTAWYGFMFGRESARKDLEH 39 (54)
Q Consensus 7 L~QTvatagvFSAvs~WYGFMfGRESaRkeL~~ 39 (54)
.+.+...-|+|+.+..+-|+.+|+--.+ -+++
T Consensus 22 ~~~~~~~ig~~~~~~~~~G~~~G~~~~~-~~~~ 53 (67)
T PF02659_consen 22 ILLIALIIGIFQFIMPLLGLLLGRRLGR-FIGS 53 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5667778889999999999999987766 3443
No 24
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=64.57 E-value=6.5 Score=20.26 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHhcCCC
Q 039697 12 ATAAAFSAVTAWYGFMFGRESAR--KDLEHLIEDLKRGNS 49 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaR--keL~~lIedLr~g~~ 49 (54)
....+..+++.+.++.+.|.-.| ++|.+-++.+.+|+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~~~~i~~g~~ 42 (70)
T PF00672_consen 3 VLFLIILLLSLLLAWLLARRITRPLRRLSDAMQRIAQGDL 42 (70)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCCCHHHHHHHCCCCHTTBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34556667777788877775543 344444455555543
No 25
>MTH00015 ND6 NADH dehydrogenase subunit 6; Validated
Probab=63.38 E-value=12 Score=23.79 Aligned_cols=21 Identities=19% Similarity=0.759 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH
Q 039697 7 LIQTIATAAAFSA-VTAWYGFM 27 (54)
Q Consensus 7 L~QTvatagvFSA-vs~WYGFM 27 (54)
++||+.++...+. .+.||+|+
T Consensus 31 i~~tl~~~~~~~~~~~sW~syi 52 (155)
T MTH00015 31 LMMALLLATTMASALSSWFAFL 52 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998887774 35599986
No 26
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=62.76 E-value=7.2 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=17.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 039697 1 MEKRFSLIQTIATAAAFSAVTAW 23 (54)
Q Consensus 1 m~k~~tL~QTvatagvFSAvs~W 23 (54)
|.||+++. .||++-+++.+|++
T Consensus 3 ~~kkl~~~-~v~~~l~lg~~sa~ 24 (170)
T PRK12750 3 LAKKLVLA-AVVLPLTLGTASAF 24 (170)
T ss_pred hHHHHHHH-HHHHHHHHHhhhhh
Confidence 67899988 78888888666663
No 27
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=61.66 E-value=18 Score=24.32 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHH-hhhh
Q 039697 5 FSLIQTIATAAAFSAVTAWY-GFM-FGRE 31 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WY-GFM-fGRE 31 (54)
|---...+.+|.-.++..|+ ||| .|-|
T Consensus 98 F~~Ak~~a~~Gl~~~~l~w~~gF~~iGGe 126 (160)
T PF09933_consen 98 FNRAKRWAIAGLTLGFLLWFFGFMVIGGE 126 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678888888888885 888 4544
No 28
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=61.39 E-value=16 Score=21.99 Aligned_cols=35 Identities=37% Similarity=0.585 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 11 IATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
+|+..-|-.=..|||-.||+.-+| +.+---||.|.
T Consensus 6 vaa~~~~~~G~lWY~plFg~~W~~-~~g~~~~~~~~ 40 (126)
T PF08570_consen 6 VAAIAAFVLGFLWYGPLFGKAWMR-AMGITPEDAKK 40 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HcCCCcccccC
Confidence 344444555578999999987543 33333344333
No 29
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=61.31 E-value=8 Score=28.47 Aligned_cols=20 Identities=45% Similarity=0.823 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~p 52 (54)
-.|.|.+|+||||.+.-||+
T Consensus 181 t~k~l~eIle~L~~~k~pp~ 200 (233)
T KOG3196|consen 181 TPKKLVEILEDLKAGKKPPA 200 (233)
T ss_pred CHHHHHHHHHHHhcCCCCCC
Confidence 35789999999999987765
No 30
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=61.03 E-value=8.4 Score=26.41 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHh
Q 039697 16 AFSAVTAWYGFMFGR-ESARKDLEHLIEDLK 45 (54)
Q Consensus 16 vFSAvs~WYGFMfGR-ESaRkeL~~lIedLr 45 (54)
-.-+|+|.||--||- -..||.|-.+|.||-
T Consensus 92 WLlsvAfy~gar~~~~~~~R~rLF~mIN~lp 122 (137)
T PF12165_consen 92 WLLSVAFYFGARFGFDKNERKRLFSMINDLP 122 (137)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHhcCc
Confidence 455899999988652 246999999999873
No 31
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=60.52 E-value=10 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhh---hHHHHHHHHHHHHhcCCC
Q 039697 17 FSAVTAWYGFMFGRE---SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 17 FSAvs~WYGFMfGRE---SaRkeL~~lIedLr~g~~ 49 (54)
-+.+.=|+.|..||+ +-+.++..|.++++.++-
T Consensus 25 ~~~~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~y 60 (76)
T PF07624_consen 25 RCFAEKLLTYALGRPLEFSDRCEIDRIVEAFKANGY 60 (76)
T ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHcCC
Confidence 345677999999997 456778888888877654
No 32
>MTH00166 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=60.21 E-value=16 Score=23.17 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHh
Q 039697 7 LIQTIATAAAFSA--VTAWYGFMF 28 (54)
Q Consensus 7 L~QTvatagvFSA--vs~WYGFMf 28 (54)
++||+..+...+- -++||+++.
T Consensus 29 i~~tl~~~~~~~~~~~s~W~syiL 52 (160)
T MTH00166 29 IIQTILISLLLGLMMKSFWFSYIL 52 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799888888774 456999863
No 33
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=58.94 E-value=44 Score=21.17 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 10 TIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 10 TvatagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~g~~~~ph 53 (54)
.......+.....++.+.++.+.....+...++++.....+.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 181 (240)
T PF05705_consen 138 LWPLLQFLLRLSIISYFIFGYPDVQEYYRRALNDFANSPSRCPR 181 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCe
Confidence 44555667777888889999999999999999999887665553
No 34
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=57.68 E-value=10 Score=23.15 Aligned_cols=26 Identities=31% Similarity=0.667 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh-HHHHHHHH
Q 039697 13 TAAAFSAVTAWYGFMFGRES-ARKDLEHL 40 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGRES-aRkeL~~l 40 (54)
+..++..+|.-|+| |+|. .+-|.+++
T Consensus 40 ~l~ly~~~~ai~~~--Gk~~g~~~~IeHI 66 (85)
T PF13150_consen 40 ALCLYMTVSAIYDI--GKEDGERMEIEHI 66 (85)
T ss_pred HHHHHHHHHHHHHh--ccCcccCccceec
Confidence 33344445556665 8776 66666554
No 35
>MTH00223 COX1 cytochrome c oxidase subunit I; Provisional
Probab=57.49 E-value=13 Score=28.69 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKDLEH 39 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRkeL~~ 39 (54)
++.++|+++.+|+-.|+||+-.+| |+.
T Consensus 382 ~v~~~f~g~~yw~P~~tGr~~~~~-l~~ 408 (512)
T MTH00223 382 AVFALFAGFNHWFPLFTGVTLHRR-WAK 408 (512)
T ss_pred HHHHHHHHHHHHhhhhccchhHHH-HHH
Confidence 456789999999999999987544 544
No 36
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.70 E-value=9 Score=20.71 Aligned_cols=14 Identities=50% Similarity=0.563 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHH
Q 039697 29 GRESARKDLEHLIE 42 (54)
Q Consensus 29 GRESaRkeL~~lIe 42 (54)
-.|+||+.|.++++
T Consensus 14 d~e~Ar~lL~evl~ 27 (44)
T TIGR03504 14 DLEGARELLEEVIE 27 (44)
T ss_pred ChHHHHHHHHHHHH
Confidence 46899999999985
No 37
>MTH00152 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=56.35 E-value=20 Score=23.00 Aligned_cols=22 Identities=18% Similarity=0.744 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHh
Q 039697 7 LIQTIATAAAFSAV-TAWYGFMF 28 (54)
Q Consensus 7 L~QTvatagvFSAv-s~WYGFMf 28 (54)
++||+..+...+.. +.|||++.
T Consensus 31 ~~~t~~~~~~~~~~~~~w~s~il 53 (163)
T MTH00152 31 LLLSLFVCVEIGLTLSSWYGYLL 53 (163)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 47888888887754 66999863
No 38
>MTH00212 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=55.82 E-value=20 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.754 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHh
Q 039697 7 LIQTIATAAAFSAV-TAWYGFMF 28 (54)
Q Consensus 7 L~QTvatagvFSAv-s~WYGFMf 28 (54)
++||+..+...+.. +.|||++.
T Consensus 31 i~~t~~~~~~~~~~~~sw~s~il 53 (160)
T MTH00212 31 LLSSLLSCLIITMESNSWYGYIL 53 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999888753 55999863
No 39
>PF03062 MBOAT: MBOAT, membrane-bound O-acyltransferase family; InterPro: IPR004299 The MBOAT (membrane bound O-acyl transferase) family of membrane proteins contains a variety of acyltransferase enzymes. A conserved histidine has been suggested to be the active site residue [].
Probab=54.87 E-value=11 Score=24.30 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039697 4 RFSLIQTIATAAAFSAVTAWYGFMFG 29 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs~WYGFMfG 29 (54)
+..+-...|+..+|..+.+|.|+..|
T Consensus 239 ~~~~~~~~a~~~tf~~sa~WHg~~~~ 264 (322)
T PF03062_consen 239 RGKLSKFLATLATFLFSALWHGFYPG 264 (322)
T ss_pred ccchhhHHHHHHHHHHHHHHhccchh
Confidence 34456788899999999999987665
No 40
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=54.45 E-value=14 Score=22.42 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
.-|.+.+||..|++.|-+|.-
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel 31 (81)
T COG1722 11 SFEEALAELEEIVESLESGEL 31 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcc
Confidence 348999999999999998864
No 41
>PF12910 RelB_N: Antitoxin of toxin-antitoxin stability system N-terminal; PDB: 3K6Q_C.
Probab=53.17 E-value=9.6 Score=20.32 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 039697 32 SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~~ 49 (54)
-||..|+.||+...+|.+
T Consensus 8 eAR~~ls~l~d~v~~~~~ 25 (46)
T PF12910_consen 8 EARNNLSKLIDRVVNGEE 25 (46)
T ss_dssp HHHHTHHHHHHHHHHT--
T ss_pred HHHHhHHHHHHHHHcCCC
Confidence 589999999999888765
No 42
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=53.03 E-value=18 Score=19.10 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHhcCC
Q 039697 29 GRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~ 48 (54)
-++.+++++..+|++|+..+
T Consensus 46 ~~~~~~~dv~~fl~~L~~~g 65 (68)
T PF05402_consen 46 DPEEAEEDVEEFLEQLREKG 65 (68)
T ss_dssp -HHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHCc
Confidence 45678999999999998754
No 43
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=53.01 E-value=18 Score=21.78 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=19.5
Q ss_pred HhhhhhHH----HHHHHHHHHHhcCCC
Q 039697 27 MFGRESAR----KDLEHLIEDLKRGNS 49 (54)
Q Consensus 27 MfGRESaR----keL~~lIedLr~g~~ 49 (54)
.||.+|++ .||..+|+.|++-+-
T Consensus 13 ~~Gk~S~k~lt~~el~~vl~~l~~~G~ 39 (119)
T PF06252_consen 13 VTGKSSSKDLTEAELEKVLDELKRLGF 39 (119)
T ss_pred HhChhhHHHCCHHHHHHHHHHHHHccC
Confidence 58888887 599999999998665
No 44
>PF02405 Permease: Permease; InterPro: IPR003453 This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long.
Probab=52.55 E-value=22 Score=23.95 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMFG 29 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMfG 29 (54)
.++.++..+-+.+.++||||+--.
T Consensus 160 ~l~K~~~fg~~i~~i~c~~Gl~~~ 183 (215)
T PF02405_consen 160 GLLKALVFGLIIALIACYYGLRAS 183 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcC
Confidence 567788888889999999999643
No 45
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.24 E-value=16 Score=26.10 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=23.1
Q ss_pred CcchhHHHHHHHHHHH-HHHHHHHHHHHhh
Q 039697 1 MEKRFSLIQTIATAAA-FSAVTAWYGFMFG 29 (54)
Q Consensus 1 m~k~~tL~QTvatagv-FSAvs~WYGFMfG 29 (54)
|.++..|.|.+-.|-+ -||.-+|=|+|+=
T Consensus 14 mn~Rq~l~Q~ln~~mivssA~MiwK~l~vv 43 (180)
T KOG3342|consen 14 MNIRQLLYQVLNFAMIVSSAYMIWKGLMVV 43 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 5677788898877765 4789999999984
No 46
>PRK02119 hypothetical protein; Provisional
Probab=50.02 E-value=22 Score=20.81 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHhc
Q 039697 32 SARKDLEHLIEDLKR 46 (54)
Q Consensus 32 SaRkeL~~lIedLr~ 46 (54)
..+++|..|.+.|+.
T Consensus 41 ~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 41 KMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345667777665543
No 47
>PRK09784 hypothetical protein; Provisional
Probab=49.37 E-value=5.6 Score=30.95 Aligned_cols=10 Identities=60% Similarity=1.032 Sum_probs=7.2
Q ss_pred HHHHHHhhhh
Q 039697 22 AWYGFMFGRE 31 (54)
Q Consensus 22 ~WYGFMfGRE 31 (54)
+|||||==-|
T Consensus 135 ywygfmeyie 144 (417)
T PRK09784 135 YWYGFMEYIE 144 (417)
T ss_pred eehhHHHHHh
Confidence 6999995433
No 48
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=48.92 E-value=67 Score=20.33 Aligned_cols=24 Identities=4% Similarity=-0.093 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMfGR 30 (54)
.+.|+|.++-+| ++-+|+.|.|+.
T Consensus 11 ~~w~~i~f~il~-~iL~~~k~l~~p 34 (167)
T PRK14475 11 EFWVGAGLLIFF-GILIALKVLPKA 34 (167)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 467887777544 455677776663
No 49
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.47 E-value=20 Score=20.89 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHh
Q 039697 34 RKDLEHLIEDLK 45 (54)
Q Consensus 34 RkeL~~lIedLr 45 (54)
+++|..|.+.|+
T Consensus 42 ~~~l~~L~~rl~ 53 (72)
T PRK02793 42 RDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 50
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=48.46 E-value=25 Score=18.94 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
|.+.++|.++++.|.++.-
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~ 20 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGEL 20 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 6788999999999998754
No 51
>COG3381 TorD Uncharacterized component of anaerobic dehydrogenases [General function prediction only]
Probab=47.80 E-value=24 Score=24.58 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Q 039697 16 AFSAVTAWYGFMFGRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 16 vFSAvs~WYGFMfGRESaRkeL~~lIedLr~g~ 48 (54)
-||.+.-|+|-+|.||--..+|..+..-+++.+
T Consensus 9 ~~s~~~r~Lg~LFy~~p~~~~l~~l~~~~~~~~ 41 (204)
T COG3381 9 NFSLLYRLLGALFYREPDDPLLAPLFSALRQDG 41 (204)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHhcCch
Confidence 589999999999999999999999999888875
No 52
>PHA00276 phage lambda Rz-like lysis protein
Probab=47.78 E-value=18 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.400 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
+.++++...||.|||+|+-
T Consensus 66 adaK~~~DrLiadlRsGn~ 84 (144)
T PHA00276 66 AALEGSTDRVIADLRSDNK 84 (144)
T ss_pred HHHHhhHHHHHHHHHcCCc
Confidence 4567777889999999975
No 53
>TIGR01903 cas_TM1808_csm4 CRISPR-associated RAMP protein, Csm4 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.
Probab=47.74 E-value=31 Score=24.05 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~g 47 (54)
..--.|||+..+|--+.|.|+ |.++++..+.+
T Consensus 17 ~SDTLFsAl~~~~~~l~g~e~----l~~~l~~~~~~ 48 (297)
T TIGR01903 17 HSDTIFSAIINAYIKLYGRDE----VDKLIEKFKDD 48 (297)
T ss_pred CchhHHHHHHHHHHHHcChHH----HHHHHHHhhcC
Confidence 344579999999999999874 66677777654
No 54
>PRK04406 hypothetical protein; Provisional
Probab=47.29 E-value=21 Score=21.13 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhc
Q 039697 33 ARKDLEHLIEDLKR 46 (54)
Q Consensus 33 aRkeL~~lIedLr~ 46 (54)
-+++|..|.+.|+.
T Consensus 44 L~~ql~~L~~rl~~ 57 (75)
T PRK04406 44 MQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHh
Confidence 35666666665543
No 55
>MTH00037 COX1 cytochrome c oxidase subunit I; Provisional
Probab=47.04 E-value=16 Score=28.21 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Q 039697 11 IATAAAFSAVTAWYGFMFGRESAR 34 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGRESaR 34 (54)
-+..++|+++.+|+..|+||+-.+
T Consensus 384 g~v~~~f~g~~yw~P~~tG~~~~~ 407 (517)
T MTH00037 384 GAVFAIFAGFTHWFPLFSGVSLHP 407 (517)
T ss_pred hHHHHHHHHHHHhhhhhcCcchhh
Confidence 366788999999999999997743
No 56
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=46.90 E-value=35 Score=19.73 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAFSAVTAWYGF 26 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs~WYGF 26 (54)
+|+-++++++.++-....+-+|.++
T Consensus 8 ~K~k~~l~~~~isi~~~lvi~~i~~ 32 (96)
T PF13800_consen 8 AKRKSRLRTVVISIISALVIFIISF 32 (96)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4667889988777666556666555
No 57
>PRK00295 hypothetical protein; Provisional
Probab=46.49 E-value=24 Score=20.34 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHh
Q 039697 33 ARKDLEHLIEDLK 45 (54)
Q Consensus 33 aRkeL~~lIedLr 45 (54)
.+++|..|.+.|+
T Consensus 38 L~~ql~~L~~rl~ 50 (68)
T PRK00295 38 LQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555554443
No 58
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=46.11 E-value=74 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.674 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhhHH--HHHHHHH
Q 039697 17 FSAVTAWYGFMFGRESAR--KDLEHLI 41 (54)
Q Consensus 17 FSAvs~WYGFMfGRESaR--keL~~lI 41 (54)
.-+-|.|.||.++++=.+ ++|.+|+
T Consensus 8 Ii~s~~~~G~~~a~~~~~R~~~L~~l~ 34 (170)
T TIGR02833 8 IVLSSTWIGFLYANRFKERPRQLRQLI 34 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577899999987554 3444443
No 59
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=45.76 E-value=5.3 Score=31.43 Aligned_cols=24 Identities=38% Similarity=0.812 Sum_probs=20.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 23 WYGFMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 23 WYGFMfGRESaRkeL~~lIedLr~g~~ 49 (54)
||--|||+.|. |.-||+.||+.|-
T Consensus 245 wYT~MlGKKss---lk~l~~kL~e~gv 268 (419)
T KOG2912|consen 245 WYTCMLGKKSS---LKPLISKLREQGV 268 (419)
T ss_pred EEeeecccccc---cHHHHHHHHHcCC
Confidence 99999999987 4567899998774
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=45.35 E-value=25 Score=23.82 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.7
Q ss_pred HhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~~~~ph 53 (54)
+.||+...+.|..+++..+..+.+++|
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~ 53 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDH 53 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCc
Confidence 479999999999999988766655554
No 61
>PRK00736 hypothetical protein; Provisional
Probab=45.03 E-value=29 Score=20.00 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHh
Q 039697 32 SARKDLEHLIEDLK 45 (54)
Q Consensus 32 SaRkeL~~lIedLr 45 (54)
..+++|..|.+.|+
T Consensus 37 ~L~~ql~~L~~rl~ 50 (68)
T PRK00736 37 QMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666555
No 62
>MTH00142 COX1 cytochrome c oxidase subunit I; Provisional
Probab=44.41 E-value=28 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKDLEH 39 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRkeL~~ 39 (54)
+.-++|+++.+|+-.|+||+-.+| |+.
T Consensus 383 ~v~~~f~g~~yw~P~~tGr~~~~~-l~~ 409 (511)
T MTH00142 383 AVFALFAGFIHWFPLFTGLTLNPR-WLK 409 (511)
T ss_pred HHHHHHHHHHHHHHhhcCccchHH-HHH
Confidence 445889999999999999977444 443
No 63
>PRK10404 hypothetical protein; Provisional
Probab=44.27 E-value=22 Score=22.03 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 039697 28 FGRESARKDLEHLIEDLK 45 (54)
Q Consensus 28 fGRESaRkeL~~lIedLr 45 (54)
|++|..+.||..|++|+.
T Consensus 5 ~~~~~l~~dl~~L~~dle 22 (101)
T PRK10404 5 FGDTRIDDDLTLLSETLE 22 (101)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 688999999999988874
No 64
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=43.83 E-value=32 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
.-|.+.++|..|++.|.+|.-
T Consensus 7 sfEeal~~Le~IV~~LE~gdl 27 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETV 27 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCC
Confidence 348899999999999998865
No 65
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=43.67 E-value=59 Score=18.14 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 039697 7 LIQTIATAAAFSAVTAWYGFMFGRESA 33 (54)
Q Consensus 7 L~QTvatagvFSAvs~WYGFMfGRESa 33 (54)
..+.+..+.+-+.++.+-.|.+||--.
T Consensus 16 ~~~~~~~~~~g~~~g~~~~y~lgr~~~ 42 (123)
T PF09335_consen 16 PWLGFLIATLGAVLGSLLAYLLGRYFG 42 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444554444
No 66
>PRK10557 hypothetical protein; Provisional
Probab=43.34 E-value=97 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=13.6
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAFSAV 20 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAv 20 (54)
++.|||+..+.+-.+.+.+
T Consensus 6 q~GfSLiElmIAm~Ig~il 24 (192)
T PRK10557 6 QRGFSLLEVLLAMAIGSVL 24 (192)
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 4689999987766665544
No 67
>PRK00846 hypothetical protein; Provisional
Probab=43.29 E-value=23 Score=21.52 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhc
Q 039697 33 ARKDLEHLIEDLKR 46 (54)
Q Consensus 33 aRkeL~~lIedLr~ 46 (54)
-++.|..|.+.|+.
T Consensus 46 L~~ql~~L~~rL~~ 59 (77)
T PRK00846 46 NAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666654
No 68
>MTH00167 COX1 cytochrome c oxidase subunit I; Provisional
Probab=42.97 E-value=40 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARK 35 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRk 35 (54)
++.++|+++.+|+-.|+||.-.+|
T Consensus 385 ~v~~~f~g~~yw~P~~~G~~~~~~ 408 (512)
T MTH00167 385 AVFAIMAGFTHWFPLFTGLTLNET 408 (512)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHH
Confidence 556888999999999999976443
No 69
>PRK10332 hypothetical protein; Provisional
Probab=42.79 E-value=38 Score=21.83 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.6
Q ss_pred cchhHHHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAFSA 19 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSA 19 (54)
++.|||+.++.+..+++.
T Consensus 8 q~GFsL~EvlvAm~i~~i 25 (107)
T PRK10332 8 QRGFSLPEVLLAMVLMVM 25 (107)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 578999999888777764
No 70
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=42.59 E-value=94 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.678 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhhhHH--HHHHHHH
Q 039697 17 FSAVTAWYGFMFGRESAR--KDLEHLI 41 (54)
Q Consensus 17 FSAvs~WYGFMfGRESaR--keL~~lI 41 (54)
.-+.|.|.||.++++=.+ ++|.+|+
T Consensus 9 Ii~s~~~~G~~~a~~~~~R~~~L~~l~ 35 (171)
T PRK08307 9 IIAASTWIGFLYAKRYKERPRQLRELK 35 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577899999987554 3444443
No 71
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=42.51 E-value=25 Score=25.57 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMF 28 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMf 28 (54)
..++.++..+.+.+.|+|.|||--
T Consensus 233 ~gliKs~vFG~iIali~cy~Gl~~ 256 (292)
T PLN03100 233 SAMIKSQVFGAIISVISCAWGVTT 256 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCccCC
Confidence 357788888999999999999864
No 72
>PRK02166 hypothetical protein; Reviewed
Probab=42.33 E-value=31 Score=23.25 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhc
Q 039697 33 ARKDLEHLIEDLKR 46 (54)
Q Consensus 33 aRkeL~~lIedLr~ 46 (54)
...|..+.|+||+.
T Consensus 122 ~s~e~~E~l~Dl~~ 135 (184)
T PRK02166 122 LSGEAKEVLQDLAA 135 (184)
T ss_pred CCHHHHHHHHHHHH
Confidence 45589999999975
No 73
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=42.21 E-value=35 Score=20.20 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCC
Q 039697 30 RESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~~ 50 (54)
-|.+-++|..|+++|.+|.-|
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~ 28 (75)
T PRK14064 8 FEEAIAELETIVEALENGSAS 28 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 378899999999999988653
No 74
>MTH00116 COX1 cytochrome c oxidase subunit I; Provisional
Probab=41.91 E-value=34 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKDLEH 39 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRkeL~~ 39 (54)
++-++|+++.+|+..|+||+-.+| |+.
T Consensus 385 ~v~~~~~g~~yw~P~~~Gr~~~~~-l~~ 411 (515)
T MTH00116 385 AVFAIMAGFTHWFPLFTGYTLHQT-WTK 411 (515)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH-HHH
Confidence 344788899999999999986433 443
No 75
>PF03533 SPO11_like: SPO11 homologue; InterPro: IPR004084 Spo11 is a meiosis-specific protein in yeast that covalently binds to DNA double-strand breaks (DSBs) during the early stages of meiosis []. These DSBs initiate homologous recombination, which is required for chromosomal segregation and generation of genetic diversity during meiosis. Mouse and human homologues of Spo11 have been cloned and characterised. The proteins are 82% identical and share ~25% identity with other family members. Mouse Spo11 has been localised to chromosome 2H4, and human SPO11 to chromosome 20q13.2-q13.3, a region amplified in some breast and ovarian tumours []. Similarity between SPO11 and archaebacterial TOP6A proteins points to evolutionary specialisation of a DNA-cleavage function for meiotic recombination []. Note that the yeast SPO11 protein shares far less similarity to other SPO11 proteins than the human and mouse homologues do to each other.; GO: 0003677 DNA binding, 0007131 reciprocal meiotic recombination
Probab=41.72 E-value=21 Score=20.48 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCCC
Q 039697 38 EHLIEDLKRGNSPPP 52 (54)
Q Consensus 38 ~~lIedLr~g~~~~p 52 (54)
..|+.+||+|+..||
T Consensus 20 asLlaal~~gggE~p 34 (43)
T PF03533_consen 20 ASLLAALRRGGGEPP 34 (43)
T ss_pred HHHHHHHHccCCCCC
Confidence 458899999998765
No 76
>COG1971 Predicted membrane protein [Function unknown]
Probab=41.29 E-value=51 Score=23.07 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 039697 9 QTIATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 9 QTvatagvFSAvs~WYGFMfGR 30 (54)
-++..-|+++.+..|.|++.|+
T Consensus 137 ~~av~iG~~T~il~~~G~~IG~ 158 (190)
T COG1971 137 LAAVAIGLITLILSALGAIIGR 158 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555668999999999999994
No 77
>PF03945 Endotoxin_N: delta endotoxin, N-terminal domain; InterPro: IPR005639 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain (IPR005638 from INTERPRO) that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved N-terminal domain.; GO: 0009405 pathogenesis; PDB: 3EB7_A 1I5P_A 2C9K_A 1CIY_A 1JI6_A 1DLC_A 1W99_A.
Probab=41.28 E-value=91 Score=19.67 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=19.9
Q ss_pred hhHHHHHHHHH-------HHHHHHHHHHHHHhhhhh
Q 039697 4 RFSLIQTIATA-------AAFSAVTAWYGFMFGRES 32 (54)
Q Consensus 4 ~~tL~QTvata-------gvFSAvs~WYGFMfGRES 32 (54)
.++++|++..+ .+.+++|.--++++.-.+
T Consensus 4 ~~~i~~~il~~~~~p~~g~v~~~~s~l~~~lwp~~~ 39 (226)
T PF03945_consen 4 GLTIVGTILGAIGVPVIGAVLGILSTLIGILWPSSS 39 (226)
T ss_dssp HHHHHHHHHHHTTSCTHHHHHHHHHHHHHHCSSTGS
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCC
Confidence 46788888764 345667777888886554
No 78
>PF04917 Shufflon_N: Bacterial shufflon protein, N-terminal constant region; InterPro: IPR007001 This domain represents the high-similarity N-terminal constant region shared by shufflon proteins. Shufflon proteins are created as a result of a clustered inversion region. The proteins retain a constant N-terminal domain, with different C-terminal domains.
Probab=41.19 E-value=1.2e+02 Score=22.45 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697 2 EKRFSLIQTIATAAAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs~WYGFMfGRE 31 (54)
+|.|+|+.+++.-+|+..+.+|.--+.-..
T Consensus 5 ~rGf~llE~~~aL~I~~~~~~~~~~~~~~~ 34 (356)
T PF04917_consen 5 DRGFTLLELIIALAILALMAPGGAQWMSDY 34 (356)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999888776555444
No 79
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=40.27 E-value=26 Score=27.23 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHH--H------HhhhhhHHHH
Q 039697 8 IQTIATAAAFSAVTAWYG--F------MFGRESARKD 36 (54)
Q Consensus 8 ~QTvatagvFSAvs~WYG--F------MfGRESaRke 36 (54)
-|.++..+++|++.+|.- | +|.||=|||.
T Consensus 95 ~~Ai~lv~~vs~i~s~inWG~gLV~gallArelarr~ 131 (453)
T PF02667_consen 95 RQAIVLVALVSMIASWINWGFGLVVGALLARELARRV 131 (453)
T ss_pred cceeeHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 377788899999999953 2 5668888763
No 80
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=39.60 E-value=46 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 15 AAFSAVTAWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 15 gvFSAvs~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
++..++++.+.+.+-+|+.+|.++++.+..++
T Consensus 443 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 443 GCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 33445555666667788888877776665544
No 81
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=39.48 E-value=27 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.0
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 039697 1 MEKRFSLIQTIATAAAFSAVT 21 (54)
Q Consensus 1 m~k~~tL~QTvatagvFSAvs 21 (54)
+++|+.||=|..=|+|.|.|-
T Consensus 46 LE~K~glV~TL~KaSVYslvl 66 (78)
T PF08656_consen 46 LERKIGLVYTLFKASVYSLVL 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998773
No 82
>TIGR02523 type_IV_pilV type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc.
Probab=39.28 E-value=1e+02 Score=19.68 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHH----------hhhhhHHHHHHHHHHHHhcC
Q 039697 2 EKRFSLIQTIATAAAFSAVTA-WYGFM----------FGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 2 ~k~~tL~QTvatagvFSAvs~-WYGFM----------fGRESaRkeL~~lIedLr~g 47 (54)
++.||||..+.+-.|++.... ..+.. .-|..|-.-..+++|.+|..
T Consensus 1 q~GfTLIEvLVAl~Ilaigllg~~~~~~~~~~~~~~~~~r~~A~~la~~~~e~~r~~ 57 (139)
T TIGR02523 1 QAGFSMIEVLVALLVLAIGVLGMAALQLKAVRYTRSASTRTIASMLAYNLLDRMRAN 57 (139)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999998777666653221 11111 11223333456788888865
No 83
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=39.11 E-value=24 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 039697 14 AAAFSAVTAWYGFM 27 (54)
Q Consensus 14 agvFSAvs~WYGFM 27 (54)
-|++||||+..|..
T Consensus 23 lg~~savSsf~gm~ 36 (80)
T PF10810_consen 23 LGVASAVSSFFGMV 36 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999998853
No 84
>PHA02554 13 neck protein; Provisional
Probab=39.07 E-value=33 Score=25.99 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCC
Q 039697 31 ESARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~~~p 52 (54)
|-||.|.+.|=|+|+..-++||
T Consensus 286 eeA~~eie~Lr~eL~~~~~~pp 307 (311)
T PHA02554 286 EEARQEKEKLREELLLLYEPPP 307 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCCCc
Confidence 7899999999999999998887
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=38.81 E-value=28 Score=27.24 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 039697 19 AVTAWYGFMFGRESARKDLEHLIEDLK 45 (54)
Q Consensus 19 Avs~WYGFMfGRESaRkeL~~lIedLr 45 (54)
-|.+=||+..||-||+|...+.-..|-
T Consensus 10 Pvaaa~GWymgrrsaqq~~~~qa~~ls 36 (389)
T COG2956 10 PVAAAYGWYMGRRSAQQDKQDQANRLS 36 (389)
T ss_pred HHHHHHHHHHhhhHHHhhHHHHHhhcc
Confidence 355669999999999998876655443
No 86
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=38.46 E-value=41 Score=18.76 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHh
Q 039697 31 ESARKDLEHLIEDLK 45 (54)
Q Consensus 31 ESaRkeL~~lIedLr 45 (54)
..-|++|+.|+..|.
T Consensus 25 ~~t~~~Ls~LvN~LL 39 (65)
T PF08154_consen 25 NITRKELSELVNQLL 39 (65)
T ss_pred CCCHHHHHHHHHHHh
Confidence 346899999999999
No 87
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=38.36 E-value=97 Score=22.12 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 039697 17 FSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 17 FSAvs~WYGFMfGRESaRkeL~~lIedLr~g 47 (54)
++-..+++|+-.|++.. +.+.+.++.+.++
T Consensus 147 ~~~~~~~~GY~~G~~~i-~~l~~~~~~it~~ 176 (263)
T PRK09855 147 LRVGWTHVGYSVGVKAI-DKVRENSQMIARS 176 (263)
T ss_pred HHHHHHHHHHHhHHHHH-HHHHhHHHHHHHH
Confidence 34445566666777777 5666767766543
No 88
>PHA03171 UL37 tegument protein; Provisional
Probab=38.21 E-value=57 Score=26.35 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 11 IATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
.++||.|..+|..-.+.||+ |+ +||||+|.
T Consensus 452 sVaaGsiaLLsLFCilli~~---RR---dLleDfRy 481 (499)
T PHA03171 452 SAAAGSIAILSLFCILLFGL---RR---DLIEDFRY 481 (499)
T ss_pred HHHHhHHHHHHHHHHHHHHH---HH---HHHHHHHH
Confidence 35678888999999999987 33 57888885
No 89
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.09 E-value=44 Score=19.82 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
|.+-++|..|++.|-+|.-
T Consensus 7 Eeal~~LE~IV~~LE~g~l 25 (75)
T PRK14066 7 ETALKKLEEVVKKLEGGEL 25 (75)
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 7899999999999988864
No 90
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=38.09 E-value=42 Score=17.06 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHhcCC
Q 039697 31 ESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~ 48 (54)
..+|+.++++++....++
T Consensus 5 te~r~~~~~~l~~v~~~~ 22 (52)
T TIGR01552 5 SEAKNKLGELLKRVRDGE 22 (52)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 357999999999998876
No 91
>MTH00183 COX1 cytochrome c oxidase subunit I; Provisional
Probab=37.99 E-value=43 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 039697 13 TAAAFSAVTAWYGFMFGRESARKDLEHL 40 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGRESaRkeL~~l 40 (54)
+-++|+++-+|+-.|+||+-.+| |+.+
T Consensus 386 v~~~~~~~yyw~P~~~Gr~~~~~-l~~~ 412 (516)
T MTH00183 386 VFAIMAAFVHWFPLFSGYTLHST-WTKI 412 (516)
T ss_pred HHHHHHHHHHHHHhhcCcchhHH-HHHH
Confidence 34667799999999999987644 6543
No 92
>PRK14422 acylphosphatase; Provisional
Probab=37.84 E-value=24 Score=21.07 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPP 51 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~ 51 (54)
....|.+++++|+.| |++
T Consensus 53 ~~~~i~~f~~~l~~g-p~~ 70 (93)
T PRK14422 53 PRAACEKLLQLLRGD-DTP 70 (93)
T ss_pred CHHHHHHHHHHHHhC-CCC
Confidence 455699999999997 443
No 93
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=37.34 E-value=27 Score=20.25 Aligned_cols=15 Identities=40% Similarity=0.820 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCC
Q 039697 34 RKDLEHLIEDLKRGN 48 (54)
Q Consensus 34 RkeL~~lIedLr~g~ 48 (54)
|.+|..|+++++.|.
T Consensus 51 Rp~l~~ll~~~~~g~ 65 (148)
T smart00857 51 RPGLQRLLADLRAGD 65 (148)
T ss_pred CHHHHHHHHHHHcCC
Confidence 899999999999985
No 94
>PRK14420 acylphosphatase; Provisional
Probab=37.14 E-value=24 Score=20.57 Aligned_cols=15 Identities=13% Similarity=0.576 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhcC
Q 039697 33 ARKDLEHLIEDLKRG 47 (54)
Q Consensus 33 aRkeL~~lIedLr~g 47 (54)
..+.|..++++|+.+
T Consensus 49 ~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 49 PEEALQLFLDAIEKG 63 (91)
T ss_pred CHHHHHHHHHHHHhC
Confidence 356799999999987
No 95
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=37.05 E-value=57 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=18.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhc
Q 039697 26 FMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 26 FMfGRESaRkeL~~lIedLr~ 46 (54)
||+|+|.+.+-+..|+++|+.
T Consensus 228 ~~~g~~~~~~~~~~L~~el~~ 248 (413)
T TIGR02260 228 AFRGTADAIEYYGFLRAEIEQ 248 (413)
T ss_pred HhCCCHHHHHHHHHHHHHHHH
Confidence 489999999999999999883
No 96
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=36.98 E-value=23 Score=28.47 Aligned_cols=18 Identities=44% Similarity=1.115 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHH
Q 039697 20 VTAWYGFMFGRESARKDLEHLIED 43 (54)
Q Consensus 20 vs~WYGFMfGRESaRkeL~~lIed 43 (54)
|-=||||-|- ||+.+|+|
T Consensus 181 vrEwYGwHFP------EL~kii~d 198 (498)
T KOG2572|consen 181 VKEWYGWHFP------ELAKIIQD 198 (498)
T ss_pred HHHHHhhhhH------HHHHHHHh
Confidence 4569999994 88888887
No 97
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=36.92 E-value=55 Score=22.56 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFG 29 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfG 29 (54)
.+-+++++.+++-.+++++-|..||
T Consensus 210 ~~~l~~~~~G~~aa~vsy~iG~l~~ 234 (234)
T cd02433 210 ISALRQLAIGGGAAAVTYLLGLLFG 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567888888888889998888776
No 98
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=36.63 E-value=50 Score=18.97 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 039697 30 RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~ 49 (54)
-|.+.++|..|++.|-+|.-
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l 22 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDL 22 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 47889999999999988764
No 99
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=36.56 E-value=59 Score=17.03 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 039697 15 AAFSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 15 gvFSAvs~WYGFMfGRESaRkeL~~lIedLr~g 47 (54)
-+|-||--|.-+.- +.|+.+..+++-+|-.
T Consensus 61 ~v~~av~~W~~~~~---~~~~~~~~ll~~ir~~ 90 (101)
T smart00875 61 EVFEAVLRWVKHDP---ERRRHLPELLSHVRFP 90 (101)
T ss_pred HHHHHHHHHHHCCH---HHHHHHHHHHHhCCCC
Confidence 47899999998764 3444677888877643
No 100
>MTH00079 COX1 cytochrome c oxidase subunit I; Provisional
Probab=36.32 E-value=40 Score=25.98 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q 039697 11 IATAAAFSAVTAWYGFMFGRESA 33 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGRESa 33 (54)
-+..++|.++.+|+--|+||+-.
T Consensus 384 g~v~~~~~g~~yw~P~~tG~~~~ 406 (508)
T MTH00079 384 GAVFGIFTGISLWWPFMTGIVYD 406 (508)
T ss_pred HHHHHHHHHHHHHHHHHhccchH
Confidence 45667899999999999999753
No 101
>PF07167 PhaC_N: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; InterPro: IPR010941 This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond [].; GO: 0016746 transferase activity, transferring acyl groups, 0042619 poly-hydroxybutyrate biosynthetic process
Probab=36.30 E-value=43 Score=22.97 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHhcCCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~~ 50 (54)
|-+|..+.+..+++||.++...
T Consensus 80 ~G~sL~~G~~nl~~Dl~~~~~~ 101 (172)
T PF07167_consen 80 GGESLVRGLRNLLEDLERGGGK 101 (172)
T ss_pred CCHHHHHHHHHHHHHHHhhCCC
Confidence 5578899999999999999653
No 102
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=36.14 E-value=23 Score=21.60 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHhcCC
Q 039697 29 GRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~ 48 (54)
|....|.+|..||++++.|.
T Consensus 43 G~~~~Rp~l~~ll~~i~~g~ 62 (134)
T cd03769 43 GLNEKRKGLLKLLEDVLAGK 62 (134)
T ss_pred ccccCCHHHHHHHHHHHcCC
Confidence 44457999999999999985
No 103
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=35.97 E-value=1.2e+02 Score=19.40 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhHHH
Q 039697 18 SAVTAWYGFMFGRESARK 35 (54)
Q Consensus 18 SAvs~WYGFMfGRESaRk 35 (54)
-+-+.++||+++++=.|+
T Consensus 9 i~a~~~~G~~~a~~~~~R 26 (170)
T PF09548_consen 9 IAASSGIGFLYARRLKRR 26 (170)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344667889988876663
No 104
>PRK14431 acylphosphatase; Provisional
Probab=35.76 E-value=35 Score=20.25 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCCC
Q 039697 34 RKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~ 50 (54)
...|..+|++|+.|.||
T Consensus 49 ~~~l~~f~~~l~~g~p~ 65 (89)
T PRK14431 49 DADLERFIQGVIEGASP 65 (89)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 45689999999997654
No 105
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=35.74 E-value=79 Score=17.98 Aligned_cols=23 Identities=35% Similarity=0.780 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 039697 3 KRFSLIQTIATAAAFSAVTAWYGF 26 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs~WYGF 26 (54)
+-+.++..+ ...+|+++-+|+|+
T Consensus 63 ~~~~~i~~~-~~~~~~~~l~~~~~ 85 (133)
T PF04290_consen 63 RILDIIASL-LILVFFAVLAWYGW 85 (133)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345556665 45568888999999
No 106
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=35.66 E-value=47 Score=21.14 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=14.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 039697 1 MEKRFSLIQTIATAAAFSAVTAW 23 (54)
Q Consensus 1 m~k~~tL~QTvatagvFSAvs~W 23 (54)
|.|+++++=.....-.+++.+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (320)
T TIGR02122 1 MKKRLFLLGAALAIVGAALAACA 23 (320)
T ss_pred CchHHHHHHHHHHHHHHHHHhhc
Confidence 77888776554444456666777
No 107
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.39 E-value=38 Score=22.98 Aligned_cols=27 Identities=15% Similarity=0.529 Sum_probs=18.6
Q ss_pred CcchhHHHHH---HHHHHHHHHHH--HHHHHH
Q 039697 1 MEKRFSLIQT---IATAAAFSAVT--AWYGFM 27 (54)
Q Consensus 1 m~k~~tL~QT---vatagvFSAvs--~WYGFM 27 (54)
++|.||||.. ||+.||.+++. .|=++.
T Consensus 4 ~~rGFTLIELmIvVaIv~ILa~IAyPSY~~yv 35 (139)
T COG4968 4 VQRGFTLIELMIVVAIVGILALIAYPSYQNYV 35 (139)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 4688999874 66677777664 366665
No 108
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=35.32 E-value=41 Score=20.36 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 039697 4 RFSLIQTIATAAAFSAVT 21 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs 21 (54)
.||||..+.+-++|+.+.
T Consensus 1 GFTLiEvlvAlaI~ai~~ 18 (101)
T TIGR01707 1 GFTLLEVLVALAIFAAAA 18 (101)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 489999888777776543
No 109
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=35.30 E-value=32 Score=26.64 Aligned_cols=29 Identities=34% Similarity=0.710 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHH--HH------HhhhhhHHHH
Q 039697 8 IQTIATAAAFSAVTAWY--GF------MFGRESARKD 36 (54)
Q Consensus 8 ~QTvatagvFSAvs~WY--GF------MfGRESaRke 36 (54)
-|.++...+.|++.+|- || +|.||=|||.
T Consensus 92 ~~ai~~v~~vs~~~s~inWG~gLV~gallAre~Ar~~ 128 (438)
T TIGR00366 92 KQAVALVTFIGSIACWINWGFGLVVGAIFAREVARRV 128 (438)
T ss_pred CceeehHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 37778888889999884 33 5678888763
No 110
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.21 E-value=52 Score=19.44 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 039697 30 RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~ 49 (54)
-|.+-++|..|+..|.+|.-
T Consensus 7 fEeal~~LE~Iv~~LE~~~l 26 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDV 26 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 47889999999999998864
No 111
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.96 E-value=44 Score=18.36 Aligned_cols=20 Identities=20% Similarity=0.660 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~p 52 (54)
.++||..+|+.+|+.+-+.|
T Consensus 10 ~~~el~~~l~~~r~~~~~~~ 29 (58)
T PF12646_consen 10 SGEELDKFLDALRKAGIPIP 29 (58)
T ss_pred CHHHHHHHHHHHHHcCCCcc
Confidence 36799999999999866444
No 112
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.44 E-value=34 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039697 4 RFSLIQTIATAAAFSAVTAWYGFMFG 29 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs~WYGFMfG 29 (54)
.+|.+=++.. ..+.|+-|||.-|+
T Consensus 266 ~Ltilt~Ifl--PlT~IaGiyGMNf~ 289 (324)
T PRK09546 266 TMSLMAMVFL--PTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHH--HHHHHHhhhccccC
Confidence 4454444333 55788889998774
No 113
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=34.42 E-value=25 Score=21.32 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHhcCC
Q 039697 32 SARKDLEHLIEDLKRGN 48 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~ 48 (54)
.-|.+|..|+++++.|.
T Consensus 52 ~~Rp~l~~ll~~~~~g~ 68 (140)
T cd03770 52 FDRPGFNRMIEDIEAGK 68 (140)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 45999999999999984
No 114
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.32 E-value=55 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
.-|.+-++|..|+..|.+|.-
T Consensus 8 sfEeal~~LEeIV~~LE~~~l 28 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDL 28 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCC
Confidence 348899999999999988764
No 115
>PF09719 C_GCAxxG_C_C: Putative redox-active protein (C_GCAxxG_C_C); InterPro: IPR010181 This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.; PDB: 1H21_A.
Probab=34.09 E-value=92 Score=18.33 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHh
Q 039697 14 AAAFSAVTAWYGFMFGRES----ARKDLEHLIEDLK 45 (54)
Q Consensus 14 agvFSAvs~WYGFMfGRES----aRkeL~~lIedLr 45 (54)
-|+++.-..--|.++||+. .++++-.++.+|.
T Consensus 40 CGAl~Ga~~~lgl~~g~~~~~~~~~~~~~~~~~~l~ 75 (120)
T PF09719_consen 40 CGALSGAVMALGLVYGRGDEDEESKEELYELAQELH 75 (120)
T ss_dssp -HHHHHHHHHHHHHS-HHH-HHHHHHHHHHHH----
T ss_pred ccCcHHHHHHHHHHcCCcccchhHHHHHHHHHHHHh
Confidence 3455555555677888865 3445555555443
No 116
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.89 E-value=57 Score=19.33 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
.-|.+.++|..|++.|.+|.-
T Consensus 11 sfEea~~~LEeIv~~LE~~~l 31 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDL 31 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCC
Confidence 348899999999999998764
No 117
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=33.83 E-value=40 Score=20.49 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q 039697 28 FGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 28 fGRESaRkeL~~lIedLr~ 46 (54)
.|++-||+-+.+++++++.
T Consensus 12 Lg~~eAr~~~e~~a~~l~~ 30 (91)
T TIGR02610 12 LGPAAARAKAEDLARKLTD 30 (91)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999874
No 118
>COG1961 PinR Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]
Probab=33.75 E-value=25 Score=22.50 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCC
Q 039697 34 RKDLEHLIEDLKRGN 48 (54)
Q Consensus 34 RkeL~~lIedLr~g~ 48 (54)
|-+|..+++|++.|.
T Consensus 50 Rp~l~~ll~~i~~g~ 64 (222)
T COG1961 50 RPGLQRLLEDIEEGK 64 (222)
T ss_pred CHHHHHHHHHHHcCC
Confidence 999999999999984
No 119
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=33.65 E-value=45 Score=17.67 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCCC
Q 039697 33 ARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~ 49 (54)
.++++..+.++++.|.+
T Consensus 31 l~~~~~~~~~~l~~G~~ 47 (124)
T PF00482_consen 31 LREELQKIRRRLRNGGS 47 (124)
T ss_dssp HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 57889999999999875
No 120
>PRK14427 acylphosphatase; Provisional
Probab=33.52 E-value=29 Score=20.74 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 039697 34 RKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~~p 52 (54)
...|.++|++|+.+ |++.
T Consensus 54 ~~~i~~f~~~l~~~-p~~a 71 (94)
T PRK14427 54 GEQVEKLLDWLNSD-RAPG 71 (94)
T ss_pred HHHHHHHHHHHhhC-CCCc
Confidence 45699999999987 4443
No 121
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=33.48 E-value=43 Score=20.37 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039697 7 LIQTIATAAAFSAVTAWYG 25 (54)
Q Consensus 7 L~QTvatagvFSAvs~WYG 25 (54)
|+=.+..-|.++|+.-|||
T Consensus 11 lil~vl~~~~lyALPnlyg 29 (101)
T PF13721_consen 11 LILVVLLLGALYALPNLYG 29 (101)
T ss_pred HHHHHHHHHHHHHhhhccC
Confidence 4445666788999999997
No 122
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=33.12 E-value=34 Score=20.01 Aligned_cols=17 Identities=29% Similarity=0.687 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHhcCC
Q 039697 32 SARKDLEHLIEDLKRGN 48 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~ 48 (54)
+.+.||.+-++|.|+|.
T Consensus 86 nt~eeI~qA~~dy~~g~ 102 (104)
T PF05726_consen 86 NTREEIEQAFEDYQNGK 102 (104)
T ss_dssp SSHHHHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 56899999999999885
No 123
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.02 E-value=89 Score=17.15 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 039697 3 KRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHL 40 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs~WYGFMfGRESaRkeL~~l 40 (54)
|++.++ ++.+.+++++++.|.-+-=| ..++|+..+
T Consensus 2 ~~l~~~--l~~~v~~~~~~~v~~~~~~~-~~~~~~~~~ 36 (85)
T TIGR02209 2 KKLYVL--LLLAILVSAISVVSAQHQTR-QLNNELQKL 36 (85)
T ss_pred chHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344443 45555666666665544333 333444443
No 124
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=32.92 E-value=59 Score=21.19 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=19.7
Q ss_pred HhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~~~~ph 53 (54)
+.|+|...++|...|+..+..+..++|
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~ 32 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDH 32 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 479999999999999766555444433
No 125
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.77 E-value=98 Score=17.52 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhc
Q 039697 12 ATAAAFSAVTAWYGFMFGRESA--RKDLEHLIEDLKR 46 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESa--RkeL~~lIedLr~ 46 (54)
+.+++.-++-.+|.+++=+.-. =+|+...++++..
T Consensus 4 lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~ 40 (90)
T PF06103_consen 4 LIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQE 40 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667788888776543 2344555555443
No 126
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=32.74 E-value=1.1e+02 Score=19.60 Aligned_cols=26 Identities=12% Similarity=0.465 Sum_probs=17.4
Q ss_pred HHHHHhhhh-hHHHHHHHHHHHHhcCCC
Q 039697 23 WYGFMFGRE-SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 23 WYGFMfGRE-SaRkeL~~lIedLr~g~~ 49 (54)
+| ||+=+. --+||..++++.|+.|..
T Consensus 16 ~y-f~iRPQkKr~Ke~~em~~sLk~GD~ 42 (113)
T PRK06531 16 IF-FMQRQQKKQAQERQNQLNAIQKGDE 42 (113)
T ss_pred HH-heechHHHHHHHHHHHHHhcCCCCE
Confidence 34 675333 334688899999998853
No 127
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=32.55 E-value=98 Score=17.47 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Q 039697 15 AAFSAVTAWYGFMFGRESARKDL 37 (54)
Q Consensus 15 gvFSAvs~WYGFMfGRESaRkeL 37 (54)
++...+-+=|.+|||+++.|+-+
T Consensus 58 ~~i~ii~~g~~~~~g~~~~~~~~ 80 (99)
T PF04956_consen 58 AIIAIIVAGIMMMFGRQSWRWFI 80 (99)
T ss_pred HHHHHHHHHHHHHhCCcCHHHHH
Confidence 34445556677889998855543
No 128
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=32.54 E-value=15 Score=22.23 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHH
Q 039697 11 IATAAAFSAVTAWYGFMF-----GRESARKDLEHLIEDL 44 (54)
Q Consensus 11 vatagvFSAvs~WYGFMf-----GRESaRkeL~~lIedL 44 (54)
++.+|++-++.+.|-+++ .++.+++++..+-+++
T Consensus 19 l~~~~~~l~~~l~~~~~~~P~~~~~~~~~~~l~~~~~~l 57 (160)
T PF04612_consen 19 LLVLGVVLLLALLYLLLWQPLLERRDQLQQQLQQLQQQL 57 (160)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444 5677777666554443
No 129
>COG3411 Ferredoxin [Energy production and conversion]
Probab=32.50 E-value=34 Score=20.64 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhHHHHHHH------HHHHHhcCCCCCCC
Q 039697 22 AWYGFMFGRESARKDLEH------LIEDLKRGNSPPPH 53 (54)
Q Consensus 22 ~WYGFMfGRESaRkeL~~------lIedLr~g~~~~ph 53 (54)
.||+.+ -.|.|++=+.. .+||++....|+++
T Consensus 27 vWY~~V-~p~~a~rIv~~hl~~Gr~Ve~~~~~~~P~~~ 63 (64)
T COG3411 27 VWYTRV-DPEDARRIVQSHLLGGRPVEELIYHTGPEAA 63 (64)
T ss_pred eeEecc-CHHHHHHHHHHHHhCCCcchhhcccCCCCCC
Confidence 599887 57888876543 45688877766654
No 130
>PRK03001 M48 family peptidase; Provisional
Probab=32.39 E-value=74 Score=21.67 Aligned_cols=39 Identities=10% Similarity=0.345 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHH-----HhhhhhHH----HHHHHHHHHHhcCCC
Q 039697 11 IATAAAFSAVTAWYGF-----MFGRESAR----KDLEHLIEDLKRGNS 49 (54)
Q Consensus 11 vatagvFSAvs~WYGF-----MfGRESaR----keL~~lIedLr~g~~ 49 (54)
++.+.+++.++.|++- +||.+... .||.++|++|-+...
T Consensus 34 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~p~L~~~v~~la~~~g 81 (283)
T PRK03001 34 LLFALGMNFFSYWFSDKMVLKMYNAQEVDENTAPQFYRMVRELAQRAG 81 (283)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCEECCccccHHHHHHHHHHHHHcC
Confidence 3456667777777762 45544432 389999999975443
No 131
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=32.36 E-value=41 Score=24.86 Aligned_cols=28 Identities=32% Similarity=0.684 Sum_probs=19.7
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhhhhhHH
Q 039697 7 LIQTIA--TAAAFSAVTAWYGFMFGRESAR 34 (54)
Q Consensus 7 L~QTva--tagvFSAvs~WYGFMfGRESaR 34 (54)
.+||+. .....=-+-+||+=|||-+..|
T Consensus 249 ~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~ 278 (310)
T PF10319_consen 249 IVQTVIPICVSFSPCVLSWYGPIFGIDLGR 278 (310)
T ss_pred HHHHHhHHHHhhccHHHHHhHHHHcCChhH
Confidence 468876 4455556778999999966543
No 132
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=32.23 E-value=44 Score=19.85 Aligned_cols=20 Identities=45% Similarity=0.665 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHHhcC
Q 039697 28 FGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 28 fGRESaRkeL~~lIedLr~g 47 (54)
.|+|.||+-+.++++.|+..
T Consensus 9 Lg~~eAr~~~~~~~~~l~~~ 28 (87)
T PF09650_consen 9 LGREEARRRAEELAEKLAEE 28 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999753
No 133
>PRK14434 acylphosphatase; Provisional
Probab=32.07 E-value=40 Score=20.11 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCCCC
Q 039697 35 KDLEHLIEDLKRGNSPP 51 (54)
Q Consensus 35 keL~~lIedLr~g~~~~ 51 (54)
+.|..+|++|++|.||.
T Consensus 53 ~~l~~f~~~l~~g~pp~ 69 (92)
T PRK14434 53 AKLAKFIQEIRKGPSKW 69 (92)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 46889999999876543
No 134
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=32.02 E-value=22 Score=24.97 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=11.0
Q ss_pred HhhhhhHHHHHHH
Q 039697 27 MFGRESARKDLEH 39 (54)
Q Consensus 27 MfGRESaRkeL~~ 39 (54)
.+|||.++.|||.
T Consensus 127 frGRe~~h~elG~ 139 (176)
T COG0290 127 FRGREMAHQELGV 139 (176)
T ss_pred EechhhhhHHHHH
Confidence 3699999999874
No 135
>COG3272 Uncharacterized conserved protein [Function unknown]
Probab=31.93 E-value=44 Score=23.49 Aligned_cols=18 Identities=44% Similarity=0.890 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~ 50 (54)
-|+||-++||.-|+|.-|
T Consensus 105 er~~l~e~Ie~YR~G~~P 122 (163)
T COG3272 105 ERQELAELIESYRRGEQP 122 (163)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 488999999999999864
No 136
>PRK13925 rnhB ribonuclease HII; Provisional
Probab=31.84 E-value=27 Score=23.59 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHH------HHHHH------HHHHhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 6 SLIQTIATAAAFS------AVTAW------YGFMFGRESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 6 tL~QTvatagvFS------Avs~W------YGFMfGRESaRkeL~~lIedLr~g~~~~ph 53 (54)
+....||+|.+.+ .+..| |||-++-----++- ++.+++.++.|.|
T Consensus 130 ~~~~~VaAASIiAKV~RD~~m~~l~~~yp~y~f~~~kGY~t~~h---~~~i~~~G~~p~h 186 (198)
T PRK13925 130 SKSAAIAAASILAKVWRDDLIKRLAKKYPGYGLEKNKGYGTAQH---RQALLKLGPTPLH 186 (198)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccCCCCCcHHH---HHHHHHhCcCHHH
Confidence 4567899999988 45567 88776654444443 5555555555555
No 137
>COG2031 AtoE Short chain fatty acids transporter [Lipid metabolism]
Probab=31.83 E-value=35 Score=27.09 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHH--------HHHhhhhhHHHH
Q 039697 9 QTIATAAAFSAVTAWY--------GFMFGRESARKD 36 (54)
Q Consensus 9 QTvatagvFSAvs~WY--------GFMfGRESaRke 36 (54)
|.+....++|.+.||- |-||+||=|||-
T Consensus 96 qa~~lv~~v~~ia~~inWGlgLvvgaifakeia~~~ 131 (446)
T COG2031 96 QAVVLVAFVSSIASWINWGLGLVVGAIFAKEIARRV 131 (446)
T ss_pred eeEeHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 5666677778787773 558889999874
No 138
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.81 E-value=36 Score=27.23 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHhcCC
Q 039697 29 GRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~ 48 (54)
|.|.|+.||.++++.||..+
T Consensus 154 G~dEakeel~EiVdfLk~p~ 173 (596)
T COG0465 154 GVDEAKEELSELVDFLKNPK 173 (596)
T ss_pred CcHHHHHHHHHHHHHHhCch
Confidence 66889999999999999765
No 139
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=31.80 E-value=39 Score=24.76 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHhc
Q 039697 29 GRESARKDLEHLIEDLKR 46 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~ 46 (54)
-.|-.|+++|++|.+||+
T Consensus 131 ~~~i~~e~igk~I~~lR~ 148 (221)
T COG1458 131 KEEIIREVVGKIIRKLRE 148 (221)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 345568999999999986
No 140
>TIGR00056 conserved hypothetical integral membrane protein. This model describes a subfamily of the DUF140 family, a set of proteins found so far in Bacteria and chloroplast. Members have multiple predicted transmembrane helical regions. One member of this family has been associated with the toluene tolerance phenotype of Pseudomonas putida. Many bacterial species have one or two members. The Mycobacteria have large paralogous families included in the DUF140 family but excluded from this subfamily on based on extreme divergence at the amino end and on phylogenetic and UPGMA trees on the more conserved regions.
Probab=31.66 E-value=47 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.413 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMF 28 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMf 28 (54)
..++.++..+.+.+.|+|.||+--
T Consensus 200 ~gliKs~~Fg~~I~~i~cy~Gl~~ 223 (259)
T TIGR00056 200 AGLVKAPFFGVAIAIIGCYYGFTT 223 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCC
Confidence 356777788888899999999854
No 141
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=31.45 E-value=57 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCC
Q 039697 35 KDLEHLIEDLKRGNS 49 (54)
Q Consensus 35 keL~~lIedLr~g~~ 49 (54)
|-+.+.|+..|.|.+
T Consensus 35 K~~~~~I~~~~aG~p 49 (59)
T smart00685 35 KQFDDAIKAARAGRP 49 (59)
T ss_pred hhHHHHHHHHHCCCC
Confidence 678899999999988
No 142
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=31.42 E-value=77 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHH------HHHHHHHhhh
Q 039697 8 IQTIATAAAFSAV------TAWYGFMFGR 30 (54)
Q Consensus 8 ~QTvatagvFSAv------s~WYGFMfGR 30 (54)
+..++.++.+-.+ .+|.||.||-
T Consensus 42 ~~~~~l~~l~~~l~~~~~~a~~~G~~~G~ 70 (418)
T PRK12291 42 SSLLALLGLYLLLKSPRNSAFASGFFVGI 70 (418)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445566666555 6788888873
No 143
>PRK01736 hypothetical protein; Reviewed
Probab=31.36 E-value=77 Score=21.13 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=16.4
Q ss_pred HHHHH-HHHHhhhhhH-------HHHHHHHHHHHhc
Q 039697 19 AVTAW-YGFMFGRESA-------RKDLEHLIEDLKR 46 (54)
Q Consensus 19 Avs~W-YGFMfGRESa-------RkeL~~lIedLr~ 46 (54)
|++-| .||+.|-.-+ ..|..+.|+||..
T Consensus 102 AL~~W~~GFl~G~gl~~~~~~~~~~e~~E~l~Dl~~ 137 (190)
T PRK01736 102 ALAGWVNHFLLGLGLAQPKLDKVSGETGEAIDDLRN 137 (190)
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 45556 4666543222 3477888888863
No 144
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.31 E-value=63 Score=20.35 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCC
Q 039697 30 RESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~~ 50 (54)
-|.+-++|..|++.|.+|.-|
T Consensus 10 FEeal~~LEeIV~~LEsgdl~ 30 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFS 30 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 488999999999999988653
No 145
>MTH00007 COX1 cytochrome c oxidase subunit I; Validated
Probab=31.22 E-value=28 Score=26.77 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHH
Q 039697 14 AAAFSAVTAWYGFMFGRESAR 34 (54)
Q Consensus 14 agvFSAvs~WYGFMfGRESaR 34 (54)
-++|+++.+|+..|+||+-.+
T Consensus 384 ~~~~~g~~yw~P~~tGr~~~~ 404 (511)
T MTH00007 384 FAIFAAFNHWFPLFTGLTLHD 404 (511)
T ss_pred HHHHHHHhhhcccccceehhH
Confidence 367889999999999998654
No 146
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=31.18 E-value=41 Score=24.03 Aligned_cols=15 Identities=60% Similarity=0.922 Sum_probs=11.4
Q ss_pred hhHHHHH--HHHHHHHh
Q 039697 31 ESARKDL--EHLIEDLK 45 (54)
Q Consensus 31 ESaRkeL--~~lIedLr 45 (54)
+|||.|| ++|||++-
T Consensus 149 ~sAReeL~REELiEEIE 165 (180)
T PLN00180 149 ESARAELWREELIEEIE 165 (180)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6899888 57888763
No 147
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like. Bacterial ribonuclease (RNase) HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII- double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.
Probab=31.17 E-value=31 Score=22.60 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHH------HHHHH------HHHHhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 6 SLIQTIATAAAFS------AVTAW------YGFMFGRESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 6 tL~QTvatagvFS------Avs~W------YGFMfGRESaRkeL~~lIedLr~g~~~~ph 53 (54)
+...+||+|.+.+ .+..| |||-+|.--.-++-- +-+++.+.+|.|
T Consensus 115 ~~~~~VaAASIvAKv~RD~~m~~l~~~~~~yg~~~~~GY~s~~h~---~~i~~~G~~~~h 171 (179)
T cd07182 115 AKSASIAAASILAKVTRDRLMIELDKKYPGYGFAKHKGYGTKEHL---EALKKYGPTPIH 171 (179)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCcCCCCCCcHHHH---HHHHHhCcCHhh
Confidence 4567899999888 45667 787665443333322 234454555545
No 148
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=30.75 E-value=54 Score=19.82 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
+.-|+++-++||+.|+|.-
T Consensus 68 ~~EK~~~~~~i~~yr~g~i 86 (117)
T PF08349_consen 68 SEEKQHFLDLIEDYREGKI 86 (117)
T ss_pred HHHHHHHHHHHHHHHcCCc
Confidence 3457889999999999965
No 149
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=30.54 E-value=63 Score=18.65 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcCC
Q 039697 25 GFMFGRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 25 GFMfGRESaRkeL~~lIedLr~g~ 48 (54)
+..-+++-.+++|..|-++|+.|.
T Consensus 86 ~~~~~~~~~~~~l~~i~~~l~~~~ 109 (109)
T PF14412_consen 86 SKKENREEFRKELQKIKNELRNGK 109 (109)
T ss_pred HhhcCHHHHHHHHHHHHHHHHcCC
Confidence 344468889999999999998873
No 150
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=30.41 E-value=1.4e+02 Score=18.54 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhc
Q 039697 14 AAAFSAVTAW-YGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 14 agvFSAvs~W-YGFMfGRESaRkeL~~lIedLr~ 46 (54)
-..++.+..| |+|-..-.++.+...+-.+-+|+
T Consensus 159 ~~~~~~l~~~~~~~e~~~~~~~~~~~er~~~~~~ 192 (219)
T PF07264_consen 159 FVLWFWLNAYFLGFEYLWSSLGRSFEERKRFLER 192 (219)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555 66665555554455555555544
No 151
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=30.37 E-value=9.3 Score=26.16 Aligned_cols=8 Identities=50% Similarity=0.945 Sum_probs=6.8
Q ss_pred HHhhhhhH
Q 039697 26 FMFGRESA 33 (54)
Q Consensus 26 FMfGRESa 33 (54)
||||+||.
T Consensus 99 llFG~Es~ 106 (155)
T COG0219 99 LLFGPESR 106 (155)
T ss_pred EEECCCCC
Confidence 78999984
No 152
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=30.27 E-value=61 Score=20.14 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~~ 50 (54)
-.+..|+++.++|+.|..-|+.
T Consensus 20 ~~~~~~~~i~~~v~~LE~~np~ 41 (198)
T PF04755_consen 20 ASPEDREEIEELVEELEALNPT 41 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhCCC
Confidence 4567899999999999988873
No 153
>PRK10167 hypothetical protein; Provisional
Probab=30.17 E-value=52 Score=22.09 Aligned_cols=17 Identities=41% Similarity=0.866 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCCC
Q 039697 34 RKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~ 50 (54)
|.|+.++|++.|+|.-|
T Consensus 112 Kq~l~~lI~~Yr~g~vp 128 (169)
T PRK10167 112 RQQLAALIDSYRRGEQP 128 (169)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 44889999999999764
No 154
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=30.17 E-value=70 Score=18.47 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
+.|++-+.++++|+|.|++
T Consensus 102 ~~a~~~~~~~~~~~~~g~~ 120 (128)
T PF11871_consen 102 QEAKQVVRSLFNDVRAGKA 120 (128)
T ss_pred HHHHHHHHHHHHHHHcCCc
Confidence 4577788999999999976
No 155
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=30.10 E-value=66 Score=21.31 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039697 5 FSLIQTIATAAAFSAVTAW 23 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~W 23 (54)
+||.-.|+..|.|..++|.
T Consensus 23 ItLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 23 ITLASVVVAVGLFAGLFFC 41 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766653
No 156
>PF07596 SBP_bac_10: Protein of unknown function (DUF1559); InterPro: IPR011453 This is a large family of paralogous proteins apparently unique to planctomycetes.
Probab=29.79 E-value=25 Score=22.26 Aligned_cols=6 Identities=67% Similarity=1.066 Sum_probs=5.0
Q ss_pred hhhHHH
Q 039697 30 RESARK 35 (54)
Q Consensus 30 RESaRk 35 (54)
||+|||
T Consensus 4 REAARR 9 (265)
T PF07596_consen 4 REAARR 9 (265)
T ss_pred HHHHHH
Confidence 888886
No 157
>PRK14426 acylphosphatase; Provisional
Probab=29.73 E-value=40 Score=19.91 Aligned_cols=19 Identities=32% Similarity=0.491 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPP 51 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~ 51 (54)
..+.+.+++++|+.|.|+.
T Consensus 51 ~~~~i~~f~~~l~~g~P~~ 69 (92)
T PRK14426 51 EEEQVEKLMEWLKEGGPRS 69 (92)
T ss_pred CHHHHHHHHHHHhcCCCCC
Confidence 3456899999999865543
No 158
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=29.60 E-value=83 Score=24.95 Aligned_cols=30 Identities=37% Similarity=0.269 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 039697 4 RFSLIQTIATAAAFSAVTAWYGFMFGRESA 33 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs~WYGFMfGRESa 33 (54)
++++.||+-..++.+++++|-|--+=||-|
T Consensus 604 ~l~lFqTL~~~~~lg~~t~~~G~r~L~~~a 633 (636)
T PF05817_consen 604 GLNLFQTLPYLAVLGAVTFLSGNRALRELA 633 (636)
T ss_pred hccHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 468999999999999999998865544433
No 159
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=29.49 E-value=30 Score=21.23 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHHhcCC
Q 039697 29 GRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~ 48 (54)
|....|.++..|+++++.|.
T Consensus 42 G~~~~Rp~~~~ll~~~~~gd 61 (146)
T cd03767 42 GAKLDRPELFRLLDDAQSGD 61 (146)
T ss_pred CCCCCCHHHHHHHHHhhCCC
Confidence 44556999999999999873
No 160
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=29.42 E-value=72 Score=19.84 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 039697 17 FSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 17 FSAvs~WYGFMfGRESaRkeL~~lIedLr~g 47 (54)
|-.+--||-=|..|++.++-+.+-.++|+.|
T Consensus 180 ~p~l~~w~~~~~~rp~~~~~~~~~~~~~~~~ 210 (211)
T PRK09481 180 AKELKGYMTRVFERDSFLASLTEAEREMRLG 210 (211)
T ss_pred ChhHHHHHHHHhccHHHHHHcCHHHHHHhcc
Confidence 4578889999999999999888888888865
No 161
>PLN02738 carotene beta-ring hydroxylase
Probab=29.21 E-value=14 Score=28.14 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHh
Q 039697 17 FSAVTAWYGFMF 28 (54)
Q Consensus 17 FSAvs~WYGFMf 28 (54)
.+|++.||.|.+
T Consensus 122 laa~t~~ye~y~ 133 (633)
T PLN02738 122 LAFLFTWVEAGE 133 (633)
T ss_pred HHHHHccccccc
Confidence 679999999998
No 162
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=29.19 E-value=84 Score=21.51 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMfGR 30 (54)
++-|++..+.+++.++.|-|+...-
T Consensus 209 ~~~~~~~~s~l~~~~~~~~G~~lS~ 233 (257)
T PF00950_consen 209 SFRRMIILSVLIGLLSSVLGLLLSY 233 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998753
No 163
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=29.05 E-value=85 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhc
Q 039697 24 YGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 24 YGFMfGRESaRkeL~~lIedLr~ 46 (54)
.||+.|.=|-.++-.+-|.+|.+
T Consensus 84 ~Gy~~GK~SY~~~C~eKf~~L~n 106 (111)
T PF07051_consen 84 LGYFVGKISYQGTCQEKFMQLPN 106 (111)
T ss_pred HHHhhhHHHHHHHHHHHHHhCcC
Confidence 48999999999998888887764
No 164
>TIGR01909 C_GCAxxG_C_C C_GCAxxG_C_C family probable redox protein. This model represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.
Probab=28.79 E-value=93 Score=19.09 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 039697 14 AAAFSAVTAWYG 25 (54)
Q Consensus 14 agvFSAvs~WYG 25 (54)
+|...|++..||
T Consensus 45 sGa~~~lgl~~g 56 (120)
T TIGR01909 45 TGAVMALGLYFG 56 (120)
T ss_pred HHHHHHHHHHhC
Confidence 344444444444
No 165
>MTH00077 COX1 cytochrome c oxidase subunit I; Provisional
Probab=28.65 E-value=70 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 039697 15 AAFSAVTAWYGFMFGRESARKDLEHL 40 (54)
Q Consensus 15 gvFSAvs~WYGFMfGRESaRkeL~~l 40 (54)
+.|+++-+|+-.|+||+-.+| |+.+
T Consensus 388 ~~~~~~y~~~P~~~Gr~~~~~-l~~~ 412 (514)
T MTH00077 388 AIMGGFVHWFPLFSGYTLHST-WSKI 412 (514)
T ss_pred HHHHHHHHHhhhhcccchHHH-HHHH
Confidence 677888899999999987554 5543
No 166
>COG3744 PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms]
Probab=28.32 E-value=10 Score=25.18 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039697 6 SLIQTIATAAAFSAVTAW 23 (54)
Q Consensus 6 tL~QTvatagvFSAvs~W 23 (54)
+++|.....-.+||+|+|
T Consensus 27 ~lIe~~~n~i~vSaaS~W 44 (130)
T COG3744 27 SLIEDARNSIFVSAASAW 44 (130)
T ss_pred HHHhCcCccEEEehHHHH
Confidence 455555555568999999
No 167
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=28.32 E-value=54 Score=18.54 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-|.+|..|+++++.+.
T Consensus 50 ~R~~~~~ll~~~~~~~ 65 (137)
T cd00338 50 DRPGLQRLLADVKAGK 65 (137)
T ss_pred CCHHHHHHHHHHHcCC
Confidence 4899999999999754
No 168
>PF00499 Oxidored_q3: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; InterPro: IPR001457 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents chain 6 from NADH:ubiquinone oxidoreductase and NADH-plastoquinone oxidoreductase. Bacterial proton-translocating NADH-quinone oxidoreductase (NDH-1) is composed of 14 different subunits. The chain belonging to this family is a subunit that constitutes the membrane sector of the complex. It reduces ubiquinone to ubiquinol utilising NADH. Plant chloroplastic NADH-plastoquinone oxidoreductase reduces plastoquinone to plastoquinol. Mitochondrial NADH-ubiquinone oxidoreductase from a variety of sources reduces ubiquinone to ubiquinol.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 3RKO_J.
Probab=28.26 E-value=91 Score=17.83 Aligned_cols=22 Identities=18% Similarity=0.736 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHh
Q 039697 7 LIQTIATAAAFSAV-TAWYGFMF 28 (54)
Q Consensus 7 L~QTvatagvFSAv-s~WYGFMf 28 (54)
+.+++..+.+++.. +.|||+++
T Consensus 21 i~~~l~~~~~~~~~~~~~~~~i~ 43 (144)
T PF00499_consen 21 ILLSLFISFLYSLLGSSWYGLIL 43 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566666665554 57887753
No 169
>MTH00103 COX1 cytochrome c oxidase subunit I; Validated
Probab=28.03 E-value=64 Score=25.03 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESAR 34 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaR 34 (54)
++-++|+++-+|+..|+||+-.+
T Consensus 385 ~v~~~~~~~y~w~p~~~G~~~~~ 407 (513)
T MTH00103 385 AVFAIMGGFVHWFPLFSGYTLND 407 (513)
T ss_pred HHHHHHHHHHHHHHhhcCcChHH
Confidence 45567889999999999998654
No 170
>PRK13926 ribonuclease HII; Provisional
Probab=27.95 E-value=32 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHH------HHHHH------HHHHhhhhhHHHHH
Q 039697 6 SLIQTIATAAAFS------AVTAW------YGFMFGRESARKDL 37 (54)
Q Consensus 6 tL~QTvatagvFS------Avs~W------YGFMfGRESaRkeL 37 (54)
+...+||+|.+.+ .+--| |||-++.--.-++-
T Consensus 136 ~~~~~VaAASIvAKv~RD~~m~~l~~~~~~yg~~~~kGY~t~~h 179 (207)
T PRK13926 136 ALSPTVAAASLLAKTERDRLMRELDARYPGYGFARHKGYGTPAH 179 (207)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcCCCCCCCHHH
Confidence 4567899999988 44556 77777655444443
No 171
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=27.87 E-value=19 Score=20.15 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhhhH--HHH-HHHHHHHHhcCCCCCC
Q 039697 19 AVTAWYGFMFGRESA--RKD-LEHLIEDLKRGNSPPP 52 (54)
Q Consensus 19 Avs~WYGFMfGRESa--Rke-L~~lIedLr~g~~~~p 52 (54)
..++.|.+++.+++- ++| |.+|.+-+.+|.=.|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~ 99 (127)
T PF13602_consen 63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPP 99 (127)
T ss_dssp CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS---
T ss_pred ccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEe
Confidence 356677777765432 555 9999998888876443
No 172
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=27.83 E-value=33 Score=23.39 Aligned_cols=14 Identities=43% Similarity=0.949 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhH
Q 039697 20 VTAWYGFMFGRESA 33 (54)
Q Consensus 20 vs~WYGFMfGRESa 33 (54)
|..++.|||.||-.
T Consensus 12 ~~~~~~~~~~~~~~ 25 (300)
T PTZ00319 12 VAAFFAFMFSRSPP 25 (300)
T ss_pred HHHHHHHHhccCCc
Confidence 56678999998743
No 173
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.60 E-value=8.5 Score=30.81 Aligned_cols=10 Identities=50% Similarity=1.205 Sum_probs=7.9
Q ss_pred HHHHHHhhhh
Q 039697 22 AWYGFMFGRE 31 (54)
Q Consensus 22 ~WYGFMfGRE 31 (54)
+||||.||-+
T Consensus 372 rw~GFnFg~d 381 (488)
T KOG4682|consen 372 RWTGFNFGFD 381 (488)
T ss_pred EEEeeeecce
Confidence 5899999853
No 174
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=27.48 E-value=27 Score=23.90 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.1
Q ss_pred HHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 26 FMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 26 FMfGRESaRkeL~~lIedLr~g~~ 49 (54)
+.||.|-||+.+.++++-|.|...
T Consensus 98 ilige~lA~~gi~~~lD~l~R~~~ 121 (371)
T TIGR02887 98 IVFGEKLARDGIEEVLDFLIRDPE 121 (371)
T ss_pred EEEeHHHHhhCHHHhhhHHhcChh
Confidence 469999999999999999988765
No 175
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=27.29 E-value=19 Score=23.80 Aligned_cols=20 Identities=30% Similarity=0.810 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 22 AWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 22 ~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
||||++ -..|+..+|++.+.
T Consensus 150 Fw~G~~-----d~~~v~~~i~~~~~ 169 (170)
T PF04768_consen 150 FWYGIE-----DLNEVEKLIKEFRD 169 (170)
T ss_dssp EEESS-------HHHHHHHHHHHHC
T ss_pred EEcCCC-----CHHHHHHHHHHhhc
Confidence 788832 35677888887763
No 176
>PRK10878 hypothetical protein; Provisional
Probab=27.01 E-value=59 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=19.4
Q ss_pred HHHHhh-hhhHHHHHHHHHHHHhcCCC
Q 039697 24 YGFMFG-RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 24 YGFMfG-RESaRkeL~~lIedLr~g~~ 49 (54)
|.+.+| .+..-.||..+|+.+|+.+.
T Consensus 39 ~~W~~g~~~p~d~~l~~iV~~Ir~~~~ 65 (72)
T PRK10878 39 FNWLMNHGKPADAELERMVRLIQTRNR 65 (72)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcC
Confidence 455666 45567999999999998655
No 177
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=26.65 E-value=45 Score=19.69 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhh-hhh---HHHHHHHHHHHHhcCC
Q 039697 15 AAFSAVTAWYGFMFG-RES---ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 15 gvFSAvs~WYGFMfG-RES---aRkeL~~lIedLr~g~ 48 (54)
-++..+.-|+|..+. |.+ .++.+..+++.||+|+
T Consensus 61 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~l~~g~ 98 (184)
T cd07989 61 PFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGE 98 (184)
T ss_pred chHHHHHHHCCeEEEecCCchhHHHHHHHHHHHHHCCC
Confidence 445666667787765 333 3677888999999876
No 178
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=26.63 E-value=63 Score=18.22 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCC
Q 039697 30 RESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~~ 50 (54)
-+.||++-.++.++++.|..|
T Consensus 60 l~~AR~~a~~~~~~~~~G~dP 80 (89)
T PF13356_consen 60 LAEAREKARELRALVRQGIDP 80 (89)
T ss_dssp HHHHHHHHHHHHHHHCTT--G
T ss_pred HHHHHHHHHHHHHHHHcCCCH
Confidence 367999999999999988764
No 179
>PLN02150 terpene synthase/cyclase family protein
Probab=26.58 E-value=59 Score=19.58 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHH
Q 039697 29 GRESARKDLEHLIEDL 44 (54)
Q Consensus 29 GRESaRkeL~~lIedL 44 (54)
..|-||+++..+|||.
T Consensus 20 seeeA~~~i~~li~~~ 35 (96)
T PLN02150 20 TKEEAVSELKKMIRDN 35 (96)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4788999999999876
No 180
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=26.39 E-value=1.2e+02 Score=20.55 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=18.3
Q ss_pred hhHHHHHHHHH------HHHHH--HHHHHHHHhhh
Q 039697 4 RFSLIQTIATA------AAFSA--VTAWYGFMFGR 30 (54)
Q Consensus 4 ~~tL~QTvata------gvFSA--vs~WYGFMfGR 30 (54)
-+..+|+++++ .+.++ |-..|++.+||
T Consensus 45 P~~~lq~~~a~~~~~~~~~~~~~iv~~~~~l~~GR 79 (255)
T TIGR02163 45 PLITLQILLAGHSPPTNALIGALIIVAFYALFGGR 79 (255)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhcc
Confidence 45677877665 34455 34788999998
No 181
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=26.14 E-value=71 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039697 3 KRFSLIQTIATAAAFSAVTAWYGFMFG 29 (54)
Q Consensus 3 k~~tL~QTvatagvFSAvs~WYGFMfG 29 (54)
|.+|++-+|.+ .-+.|+.|||.-|.
T Consensus 259 k~LTvvt~Ifl--P~t~IaGiyGMNf~ 283 (318)
T TIGR00383 259 KILTVVSTIFI--PLTFIAGIYGMNFK 283 (318)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhCCcc
Confidence 45555554433 45677888886663
No 182
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=25.86 E-value=23 Score=20.27 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfGRE 31 (54)
-..++.+.++.+...+++|-|.-.|-+
T Consensus 4 ~~~lk~~l~~~lv~~i~~~i~~~~~~~ 30 (57)
T PF12354_consen 4 KNWLKNLLILLLVIIISIWIGTSNGTK 30 (57)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCcce
Confidence 345566667778888889999877644
No 183
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=25.52 E-value=48 Score=22.39 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcC
Q 039697 34 RKDLEHLIEDLKRG 47 (54)
Q Consensus 34 RkeL~~lIedLr~g 47 (54)
-|||++.|.||-+.
T Consensus 104 TkeLedFIadLd~t 117 (121)
T PF15151_consen 104 TKELEDFIADLDKT 117 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 38999999999653
No 184
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=25.45 E-value=2.1e+02 Score=18.95 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHhcCCC
Q 039697 14 AAAFSAVTAWYGFMFGRESAR--KDLEHLIEDLKRGNS 49 (54)
Q Consensus 14 agvFSAvs~WYGFMfGRESaR--keL~~lIedLr~g~~ 49 (54)
..++.++++..+++|-|-..| +.|...++.+.+|+-
T Consensus 159 ~~~~~l~~~~~~~~~~r~~~~pl~~l~~~~~~~~~g~~ 196 (435)
T PRK09467 159 TLAIGLLSVAGGWLFIRIQNRPLVALEHAALQVGKGEI 196 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Confidence 344455556666667665443 455566667766664
No 185
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=66 Score=22.66 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
-+|-|...|..+++||+.|..
T Consensus 81 skeeA~~llk~~~~~l~~g~~ 101 (163)
T KOG3259|consen 81 SKEEALDLLKGYHEDLKSGSG 101 (163)
T ss_pred hHHHHHHHHHHhHHHhhcCcc
Confidence 368899999999999998865
No 186
>PRK08808 general secretion pathway protein J; Validated
Probab=25.23 E-value=2.3e+02 Score=19.42 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=10.8
Q ss_pred cchhHHHHHHHHHHHH
Q 039697 2 EKRFSLIQTIATAAAF 17 (54)
Q Consensus 2 ~k~~tL~QTvatagvF 17 (54)
++.||||....+-.++
T Consensus 6 ~~GFTLiEllia~ai~ 21 (211)
T PRK08808 6 AAGFTLIEVLLATVLL 21 (211)
T ss_pred CCCeeHHHHHHHHHHH
Confidence 4679999876554444
No 187
>PF09247 TBP-binding: TATA box-binding protein binding; InterPro: IPR009067 In eukaryotes, the general transcription factor TFIID helps to regulate transcription by RNA polymerase II from class II promoters. TFIID consists of TATA-box-binding proteins (TBP) and TBP-associated factors (TAFIIs), which together mediate both activation and inhibition of transcription. In Drosophila, the N-terminal region of TAFII-230 (the TFIID 230kDa subunit) binds directly to TBP, thereby inhibiting the binding of TBP to the TATA box. The structure of TAFII-230 is comprised of three short helices in an irregular array, which forms the core that occupies the DNA-binding surface of TBP []. Note, the Gene3D model in this entry is hitting fewer proteins than it should and is under revision.; PDB: 1TBA_A.
Probab=25.09 E-value=28 Score=20.96 Aligned_cols=7 Identities=57% Similarity=1.350 Sum_probs=4.9
Q ss_pred HHHHhhh
Q 039697 24 YGFMFGR 30 (54)
Q Consensus 24 YGFMfGR 30 (54)
-|||||-
T Consensus 14 tGflFGN 20 (62)
T PF09247_consen 14 TGFLFGN 20 (62)
T ss_dssp TTHHHH-
T ss_pred eeeeecc
Confidence 4899984
No 188
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=25.05 E-value=78 Score=19.82 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
.-|+.|...|+.||+.|+-
T Consensus 45 ~~Ak~e~~~Lr~dl~aG~~ 63 (125)
T PF03245_consen 45 ADAKAEIDRLRADLAAGNK 63 (125)
T ss_pred HHHHhhHHHHHHHHHcCCc
Confidence 4678888999999999953
No 189
>PF07606 DUF1569: Protein of unknown function (DUF1569); InterPro: IPR011463 This entry represents a family of hypothetical proteins identified in Rhodopirellula baltica and other bacteria.
Probab=24.94 E-value=1.1e+02 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS-PPPHS 54 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~-~~phs 54 (54)
|.++.+|.+.|++....+. -+||+
T Consensus 100 ~~~~~~L~~~i~~f~~~~~~~~~Hp 124 (152)
T PF07606_consen 100 EEEKERLIEAIQRFQAHPGELAPHP 124 (152)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 5567788888888775433 45664
No 190
>PF10056 DUF2293: Uncharacterized conserved protein (DUF2293); InterPro: IPR018744 Proteins in this entry are found the bacteria and fungi, they have no known function.
Probab=24.83 E-value=68 Score=19.62 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q 039697 28 FGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 28 fGRESaRkeL~~lIedLr~ 46 (54)
..|++||+.+.+.++++..
T Consensus 65 ~~R~~AR~~V~~~~~~~L~ 83 (86)
T PF10056_consen 65 YDRDEARRFVADRVNAVLR 83 (86)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3699999999999988754
No 191
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=24.79 E-value=53 Score=26.26 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 039697 32 SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~~ 49 (54)
.||+++-++|.++|+++.
T Consensus 732 ~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 732 KARRHLWDIIARLRKNGK 749 (885)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 689999999999999773
No 192
>PTZ00413 lipoate synthase; Provisional
Probab=24.67 E-value=29 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=23.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 24 YGFMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 24 YGFMfGRESaRkeL~~lIedLr~g~~ 49 (54)
-|+|+|---.++|+-++++|||+-+-
T Consensus 299 SGiIVGLGET~eEvie~m~dLrelGV 324 (398)
T PTZ00413 299 SSIMLGLGETEEEVRQTLRDLRTAGV 324 (398)
T ss_pred eeeEecCCCCHHHHHHHHHHHHHcCC
Confidence 38999999999999999999998664
No 193
>PF04356 DUF489: Protein of unknown function (DUF489); InterPro: IPR007451 Protein of unknown function, cotranscribed with purB in Escherichia coli, but with function unrelated to purine biosynthesis [].; PDB: 1QZ4_A 1SDI_A.
Probab=24.65 E-value=73 Score=22.14 Aligned_cols=14 Identities=36% Similarity=0.285 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 039697 9 QTIATAAAFSAVTA 22 (54)
Q Consensus 9 QTvatagvFSAvs~ 22 (54)
||+|.||||=|..+
T Consensus 2 q~lALAgi~Qaa~l 15 (193)
T PF04356_consen 2 QTLALAGICQAAQL 15 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988765
No 194
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=24.59 E-value=1.2e+02 Score=20.74 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESA 33 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESa 33 (54)
+.-.+.|.+||-.||.+|+=.+
T Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~ 198 (224)
T PTZ00443 177 AGFFTISSFAFLFGILMGLMIA 198 (224)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999997543
No 195
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=24.46 E-value=87 Score=19.81 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039697 13 TAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGR 30 (54)
.++++...-..|+|||=+
T Consensus 55 l~ail~lL~a~Ya~fyl~ 72 (79)
T PF15168_consen 55 LAAILVLLLAFYAFFYLN 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 567788888899999855
No 196
>PRK09835 sensor kinase CusS; Provisional
Probab=24.45 E-value=2.2e+02 Score=18.96 Aligned_cols=8 Identities=13% Similarity=0.301 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 039697 19 AVTAWYGF 26 (54)
Q Consensus 19 Avs~WYGF 26 (54)
+++.|+.+
T Consensus 29 ~~~~~~~~ 36 (482)
T PRK09835 29 FAFTWIMI 36 (482)
T ss_pred HHHHHHHH
Confidence 33444433
No 197
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=24.15 E-value=1.8e+02 Score=17.95 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfGR 30 (54)
+.++..+..+ +|+++-+|||+.+-.
T Consensus 80 l~~l~~l~~~-~f~~~~~~~~~~~~~ 104 (157)
T PRK09877 80 VSLLTHSLIL-LLCGALAWGATLKTI 104 (157)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444444444 577888898886643
No 198
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=23.97 E-value=78 Score=19.50 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHhcCC
Q 039697 31 ESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~ 48 (54)
+..|..|.+|.+||..|.
T Consensus 7 ~evq~~L~~L~~el~~Gd 24 (111)
T PF06464_consen 7 PEVQNRLQELDLELEEGD 24 (111)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 457889999999998874
No 199
>PRK01265 heat shock protein HtpX; Provisional
Probab=23.85 E-value=1.4e+02 Score=21.70 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHH-----HHhh-hhh---H--HHHHHHHHHHHhcCCC
Q 039697 11 IATAAAFSAVTAWYG-----FMFG-RES---A--RKDLEHLIEDLKRGNS 49 (54)
Q Consensus 11 vatagvFSAvs~WYG-----FMfG-RES---a--RkeL~~lIedLr~g~~ 49 (54)
++.+.+|..+++|++ .||| |+- . -.||.++|++|-+...
T Consensus 48 ~~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g 97 (324)
T PRK01265 48 LIFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNG 97 (324)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcC
Confidence 445667777787776 4666 221 1 2478999999866543
No 200
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=23.84 E-value=3e+02 Score=20.24 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 18 SAVTAWYGFMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 18 SAvs~WYGFMfGRESaRkeL~~lIedLr~g~~ 49 (54)
.++.+|+++...--.-=++|...++++..|+-
T Consensus 206 ~~~~~~~~i~~~I~~pL~~l~~~~~~ia~GDL 237 (554)
T PRK15041 206 VIFAVWFGIKASLVAPMNRLIDSIRHIAGGDL 237 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555432212222455666677776654
No 201
>COG4795 PulJ Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
Probab=23.62 E-value=84 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 039697 4 RFSLIQTIATAAAFSAVTA 22 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs~ 22 (54)
.|||+..+.+-..||.++.
T Consensus 8 GFTLLEvmvAl~i~All~l 26 (194)
T COG4795 8 GFTLLEVLVALAIFALLLL 26 (194)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 7999999888888887654
No 202
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=23.57 E-value=68 Score=17.17 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcC
Q 039697 34 RKDLEHLIEDLKRG 47 (54)
Q Consensus 34 RkeL~~lIedLr~g 47 (54)
+++|..+|+.||.-
T Consensus 59 ~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 59 LEHLNQIIRKLRQI 72 (80)
T ss_dssp HHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHCC
Confidence 57899999999864
No 203
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=23.56 E-value=1.2e+02 Score=20.82 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHhcCCCCCCC
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKD----LEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRke----L~~lIedLr~g~~~~ph 53 (54)
.+.|++ +-.++.+.+|.+..+++ =+++.+||-+..|+||.
T Consensus 135 I~iGvi--lLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (191)
T PRK14789 135 ITIGVA--ALAFHIIFIGEEPAPTEPEPIDDELLSELLSRDPSPPA 178 (191)
T ss_pred HHHHHH--HHHHHHHHhccCCCCccCCCCchHHHHHHHhcCCCCCC
Confidence 344443 23445556777655544 35788999888887773
No 204
>PF00421 PSII: Photosystem II protein; InterPro: IPR000932 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the intrinsic antenna proteins CP43 (PsbC) and CP47 (PsbB) found in the reaction centre of PSII. These polypeptides bind to chlorophyll a and beta-carotene and pass the excitation energy on to the reaction centre []. This family also includes the iron-stress induced chlorophyll-binding protein CP43' (IsiA), which evolved in cyanobacteria from a PSII protein to cope with light limitations and stress conditions. Under iron-deficient growth conditions, CP43' associates with PSI to form a complex that consists of a ring of 18 or more CP43' molecules around a PSI trimer, which significantly increases the light-harvesting system of PSI. IsiA can also provide photoprotection for PSII [].; GO: 0016168 chlorophyll binding, 0009767 photosynthetic electron transport chain, 0019684 photosynthesis, light reaction, 0009521 photosystem, 0016020 membrane; PDB: 3A0B_b 3A0H_b 3ARC_b 2AXT_B 1S5L_B 3BZ1_B 1IZL_L 1W5C_B 3KZI_B 4FBY_N ....
Probab=23.55 E-value=88 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.501 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------hhh----hhHHHHHHHHHHHHhcC
Q 039697 8 IQTIATAAAFSAVTAWYGFM------FGR----ESARKDLEHLIEDLKRG 47 (54)
Q Consensus 8 ~QTvatagvFSAvs~WYGFM------fGR----ESaRkeL~~lIedLr~g 47 (54)
+=.|+.+|..+|..|||+=. ||- -|..+|..-+++|.|-|
T Consensus 240 Laav~~~gfiaA~~~wyn~tayP~EfyGPt~~e~~q~Q~~~~lVrd~~l~ 289 (437)
T PF00421_consen 240 LAAVAFMGFIAAYFMWYNTTAYPSEFYGPTRYEASQAQEFTFLVRDQRLG 289 (437)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTSTCCCS--THHHHHTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhhhheeCCccCchhhcCcccccccccceeeeeeccCchh
Confidence 34688899999999999842 442 13356666777766543
No 205
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=23.45 E-value=74 Score=17.06 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-+++|..|++.||+=.
T Consensus 47 ~~~~L~~li~~L~~i~ 62 (74)
T cd04877 47 EFEKLQTLMPEIRRID 62 (74)
T ss_pred CHHHHHHHHHHHhCCC
Confidence 3578999999998744
No 206
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.41 E-value=1.2e+02 Score=17.72 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhh
Q 039697 15 AAFSAVTAWYGFMFG 29 (54)
Q Consensus 15 gvFSAvs~WYGFMfG 29 (54)
.+++++||-+||..+
T Consensus 18 ~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 18 IISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356778888998764
No 207
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.26 E-value=85 Score=18.00 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
.-+..++++..+|+.+|...+
T Consensus 58 ~~~~~~~~~~~~i~~i~~~~p 78 (157)
T cd01833 58 DPDTAPDRLRALIDQMRAANP 78 (157)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 456778999999999998654
No 208
>PRK14429 acylphosphatase; Provisional
Probab=23.19 E-value=54 Score=19.19 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcC
Q 039697 33 ARKDLEHLIEDLKRG 47 (54)
Q Consensus 33 aRkeL~~lIedLr~g 47 (54)
....|.+++++|+.|
T Consensus 49 ~~~~i~~f~~~l~~g 63 (90)
T PRK14429 49 SDPAVDNLIAWCEVG 63 (90)
T ss_pred CHHHHHHHHHHHhhC
Confidence 345699999999976
No 209
>PRK00218 putative lysogenization regulator; Reviewed
Probab=23.17 E-value=1e+02 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=14.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 039697 1 MEKRFSLIQTIATAAAFSAVTA 22 (54)
Q Consensus 1 m~k~~tL~QTvatagvFSAvs~ 22 (54)
|.+.+- -||+|.||||=|...
T Consensus 1 M~~~~~-~~tlALAgi~QAa~l 21 (207)
T PRK00218 1 MAKNYQ-DRTLALAGICQAAQL 21 (207)
T ss_pred CCccHH-HHHHHHHHHHHHHHH
Confidence 444443 399999999987653
No 210
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=23.11 E-value=3e+02 Score=20.02 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHhc
Q 039697 29 GRESARKDLEHLIEDLKR 46 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~ 46 (54)
|-+.++++|.++++.+++
T Consensus 59 g~~~~k~~l~~~~~~l~~ 76 (495)
T TIGR01241 59 GIDEAKEELMEIVDFLKN 76 (495)
T ss_pred CHHHHHHHHHHHHHHHHC
Confidence 668899999999998875
No 211
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=22.98 E-value=85 Score=16.06 Aligned_cols=18 Identities=17% Similarity=0.582 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 039697 28 FGRESARKDLEHLIEDLK 45 (54)
Q Consensus 28 fGRESaRkeL~~lIedLr 45 (54)
+||+..+.-+...++++|
T Consensus 23 ~~r~~v~~~vR~~ld~~R 40 (40)
T PF12390_consen 23 YGRPLVVDAVREVLDELR 40 (40)
T ss_pred cCHHHHHHHHHHHHHHhC
Confidence 577777776777777665
No 212
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=22.97 E-value=80 Score=18.61 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCCC
Q 039697 34 RKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~ 50 (54)
-..||++|.|.+.+.++
T Consensus 25 nq~LG~vI~~~e~gt~~ 41 (58)
T PF07577_consen 25 NQNLGDVIRDFENGTGS 41 (58)
T ss_pred CCCHHHHHHHHhccCCC
Confidence 45799999999966654
No 213
>PF03327 Herpes_VP19C: Herpesvirus capsid shell protein VP19C; InterPro: IPR004999 The family is the capsid assembly protein, which binds DNA and may be involved in anchoring DNA in the capsid.; GO: 0003677 DNA binding, 0019069 viral capsid assembly
Probab=22.94 E-value=1.8e+02 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~g 47 (54)
+++++..++..||| .+-+...|.++++.|+.-
T Consensus 61 ~a~a~r~~~~~~Y~----~~~~~~~l~~l~~~l~~l 92 (270)
T PF03327_consen 61 VAPATRAHLIANYG----SSRMEARLDWLDPNLQAL 92 (270)
T ss_pred ccHHHHHHHHHHhc----CchhHHHHHHHHHHHHHH
Confidence 45678889999996 555667788888877643
No 214
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=22.86 E-value=1.7e+02 Score=17.09 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 13 TAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
-.-+.+.+.-.-+-++|++++|+=+..+.+-|-+
T Consensus 77 ~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~ 110 (113)
T PF08628_consen 77 RELLLSLLPDTLKKVVGSENSRRGARRIFEMLQN 110 (113)
T ss_pred HHHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCC
Confidence 3455677777888899999999999998887754
No 215
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=22.76 E-value=39 Score=26.62 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhh
Q 039697 20 VTAWYGFMFGRE 31 (54)
Q Consensus 20 vs~WYGFMfGRE 31 (54)
-++|.||+|||-
T Consensus 235 ~AY~~Gf~fGkt 246 (432)
T KOG1440|consen 235 FAYLFGFFFGKT 246 (432)
T ss_pred HHHHHhhhhcCC
Confidence 368999999975
No 216
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.68 E-value=67 Score=15.88 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHhcC
Q 039697 31 ESARKDLEHLIEDLKRG 47 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g 47 (54)
+..+.+|..+++.|+.-
T Consensus 50 ~~~~~~l~~~i~~L~~~ 66 (79)
T cd04881 50 ETSEAALNAALAEIEAL 66 (79)
T ss_pred cCCHHHHHHHHHHHHcC
Confidence 56689999999999963
No 217
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=22.56 E-value=1.8e+02 Score=19.58 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039697 10 TIATAAAFSAVTAWYGFMFGR 30 (54)
Q Consensus 10 TvatagvFSAvs~WYGFMfGR 30 (54)
++..+|++..|.+|.||-.+-
T Consensus 19 ~ll~~g~~~G~~~~~~~~~~~ 39 (185)
T TIGR02161 19 TLLLGGFVGGIVFWGGFNTGL 39 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888999887665
No 218
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=22.56 E-value=1.2e+02 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMfGRE 31 (54)
++-+.+..+.++++++.+-|++..+.
T Consensus 212 ~~~~~~~~s~l~g~~~~~~g~~ls~~ 237 (261)
T cd06550 212 SHRYLLPLSALLGAILLLLGDLLSRT 237 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999998763
No 219
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=22.52 E-value=7.5 Score=25.76 Aligned_cols=10 Identities=50% Similarity=1.291 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q 039697 18 SAVTAWYGFM 27 (54)
Q Consensus 18 SAvs~WYGFM 27 (54)
.+|-+||||.
T Consensus 113 G~VIyw~G~~ 122 (139)
T PF14811_consen 113 GAVIYWFGFI 122 (139)
T ss_pred ceEEEeccch
Confidence 3677999984
No 220
>PLN02777 photosystem I P subunit (PSI-P)
Probab=22.25 E-value=2.2e+02 Score=19.96 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=18.7
Q ss_pred HHHHHHH-hhhhhHHHHHHHHHHHHhcC
Q 039697 21 TAWYGFM-FGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 21 s~WYGFM-fGRESaRkeL~~lIedLr~g 47 (54)
+.||.+- .=+.+-|+||.+-|++++..
T Consensus 135 s~WF~yRyLLfke~ReeL~~ki~~lk~~ 162 (167)
T PLN02777 135 TGWFAYKNLVFKPDREALIEKIKDTYKE 162 (167)
T ss_pred hhhhhhhHhcCcccHHHHHHHHHHHHHH
Confidence 4555542 23567899999999998763
No 221
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=21.91 E-value=21 Score=24.28 Aligned_cols=8 Identities=63% Similarity=1.323 Sum_probs=6.6
Q ss_pred HHHHhhhh
Q 039697 24 YGFMFGRE 31 (54)
Q Consensus 24 YGFMfGRE 31 (54)
||||+||+
T Consensus 106 ~gfMYg~~ 113 (133)
T COG3607 106 EGFMYGRS 113 (133)
T ss_pred ccccccee
Confidence 78999875
No 222
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.90 E-value=89 Score=19.54 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcCC
Q 039697 25 GFMFGRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 25 GFMfGRESaRkeL~~lIedLr~g~ 48 (54)
.|.=.-+.++++|.+.++.|+.=+
T Consensus 142 ~~~~~~~~~~~~l~~~lekL~~fd 165 (204)
T PF04740_consen 142 SFIDSLEKAKKKLQETLEKLRAFD 165 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455889999999999998643
No 223
>PRK10987 regulatory protein AmpE; Provisional
Probab=21.73 E-value=99 Score=21.47 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.8
Q ss_pred HhhhhhHHHHHHHHHHHHhcCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~ 48 (54)
.||..+-+++..++.+.|++|+
T Consensus 81 ~lg~r~L~~~~~~v~~AL~~gD 102 (284)
T PRK10987 81 CIGAGKQRLHYKAYLQAACRGD 102 (284)
T ss_pred HhCCchHHHHHHHHHHHHHCCC
Confidence 4899999999999999999875
No 224
>PLN02448 UDP-glycosyltransferase family protein
Probab=21.62 E-value=74 Score=23.06 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHhcC
Q 039697 32 SARKDLEHLIEDLKRG 47 (54)
Q Consensus 32 SaRkeL~~lIedLr~g 47 (54)
|+.|.|.++|+++++|
T Consensus 443 ss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 443 SSDTNLDAFIRDISQG 458 (459)
T ss_pred cHHHHHHHHHHHHhcc
Confidence 6778888888888877
No 225
>PRK04325 hypothetical protein; Provisional
Probab=21.56 E-value=1e+02 Score=17.93 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHh
Q 039697 33 ARKDLEHLIEDLK 45 (54)
Q Consensus 33 aRkeL~~lIedLr 45 (54)
.+++|..|.+.|+
T Consensus 42 L~~ql~~L~~rl~ 54 (74)
T PRK04325 42 LQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666655443
No 226
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=21.52 E-value=58 Score=20.62 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-|.+|..||++++.|.
T Consensus 48 ~R~~l~~ll~~~~~gd 63 (200)
T PRK13413 48 KDRKLGKLLKKMRKGD 63 (200)
T ss_pred ccccHHHHHHHHhCCC
Confidence 3789999999999874
No 227
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.36 E-value=1.1e+02 Score=18.01 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 039697 30 RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~ 49 (54)
.+..++.+..+|+.+|+-++
T Consensus 88 ~~~~~~~l~~li~~i~~~~~ 107 (188)
T cd01827 88 KDDFKKDYETMIDSFQALPS 107 (188)
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 46678899999999987544
No 228
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.32 E-value=1.5e+02 Score=19.40 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCC
Q 039697 21 TAWYGFMFGRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 21 s~WYGFMfGRESaRkeL~~lIedLr~g~ 48 (54)
|.|.+|.==-+-.+=|+..|.+|+++.+
T Consensus 73 slw~~L~~ItDkTqvEw~el~~d~~h~g 100 (146)
T PF07295_consen 73 SLWDELSSITDKTQVEWAELAQDLEHHG 100 (146)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhcC
Confidence 5677776666777889999999999876
No 229
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=1.3e+02 Score=18.58 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
+--|.-|..|++.|+.-.+
T Consensus 39 ~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 39 DKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4456667777777765443
No 230
>PF08040 NADH_oxidored: MNLL subunit; InterPro: IPR012575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the MNLL subunits of NADH:ubiquinone oxidoreductase complex []. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear [].; GO: 0003954 NADH dehydrogenase activity, 0005739 mitochondrion
Probab=21.10 E-value=1.3e+02 Score=18.12 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfGRE 31 (54)
+.++|.|----+-.+|-. ||++|-=
T Consensus 2 ~n~~~~vr~~~~~~~vPl--gf~iG~y 26 (59)
T PF08040_consen 2 VNLIQIVRDHWVWILVPL--GFVIGCY 26 (59)
T ss_pred ccHHHHHHHHHHHHHHhh--Hhhheee
Confidence 357777777777777777 9998853
No 231
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.04 E-value=1.5e+02 Score=17.47 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
..+...+.+..+|+.+|+.+.
T Consensus 77 ~~~~~~~~~~~li~~~~~~~~ 97 (183)
T cd04501 77 SLEMIKDNIRSMVELAEANGI 97 (183)
T ss_pred CHHHHHHHHHHHHHHHHHCCC
Confidence 456788899999999998655
No 232
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=20.98 E-value=1e+02 Score=16.88 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 039697 23 WYGFMFGRESARKDLEHLIEDL 44 (54)
Q Consensus 23 WYGFMfGRESaRkeL~~lIedL 44 (54)
-+.||-+||+.|+.|--.|--+
T Consensus 11 ll~fl~~~e~~r~~ll~vi~tl 32 (46)
T smart00755 11 LLQFLTLRESERETLLKVISTV 32 (46)
T ss_pred HHHHhccCcchHHHHHHHHHHH
Confidence 4789999998777777666543
No 233
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=20.94 E-value=81 Score=22.93 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039697 15 AAFSAVTAWYGFMFGRE 31 (54)
Q Consensus 15 gvFSAvs~WYGFMfGRE 31 (54)
|.++...+|.|+|==-|
T Consensus 43 gL~gim~lWlG~MrIaE 59 (206)
T COG2715 43 GLIGIMALWLGLMRIAE 59 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788889999995444
No 234
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=20.90 E-value=1.1e+02 Score=17.97 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=15.0
Q ss_pred hhhhHHHHHHHHHHHHh
Q 039697 29 GRESARKDLEHLIEDLK 45 (54)
Q Consensus 29 GRESaRkeL~~lIedLr 45 (54)
-|+.+..||.+|++.|-
T Consensus 104 ~~~~~~~el~~l~~~l~ 120 (139)
T PF00669_consen 104 DRQAIAAELQQLLDQLN 120 (139)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHH
Confidence 68899999999999886
No 235
>PLN02676 polyamine oxidase
Probab=20.88 E-value=83 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.1
Q ss_pred HHHHHHhh-hhhHHHHHHHHHHHHhcC
Q 039697 22 AWYGFMFG-RESARKDLEHLIEDLKRG 47 (54)
Q Consensus 22 ~WYGFMfG-RESaRkeL~~lIedLr~g 47 (54)
-|+|+|=| -+|.+++-.++++.|...
T Consensus 450 ~~~g~~eGA~~SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 450 KYNGYVHGAYLAGIDTANDLLECIKKK 476 (487)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccC
Confidence 49999988 599999999999988653
No 236
>MTH00045 ND6 NADH dehydrogenase subunit 6; Validated
Probab=20.87 E-value=1.7e+02 Score=19.02 Aligned_cols=21 Identities=5% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHH
Q 039697 7 LIQTIATAAAFSAVTA-WYGFM 27 (54)
Q Consensus 7 L~QTvatagvFSAvs~-WYGFM 27 (54)
++|++.+++.+..... |++++
T Consensus 31 i~~~~~~~~~~~~~~~~f~~~i 52 (162)
T MTH00045 31 VLVSLSGCLLLSLLGLSFLALL 52 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3677888887765544 77765
No 237
>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional
Probab=20.86 E-value=98 Score=24.06 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESAR 34 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaR 34 (54)
++.++|+++-+|+-.|+||.-.+
T Consensus 384 ~v~~~~~~~~~w~P~~tG~~l~~ 406 (511)
T MTH00048 384 SYSSVVIMFIWWWPLITGLSLNK 406 (511)
T ss_pred HHHHHHHHHHHHHHHhcccchhH
Confidence 45568899999999999996653
No 238
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.78 E-value=1.3e+02 Score=21.19 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039697 10 TIATAAAFSAVTAWYGFMFG 29 (54)
Q Consensus 10 TvatagvFSAvs~WYGFMfG 29 (54)
.+|++++|+.+..|--|++-
T Consensus 199 ~laa~~I~~fi~~WN~fl~p 218 (281)
T COG0395 199 GLAAVAIFTFIGAWNEFLWP 218 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999875
No 239
>PLN02428 lipoic acid synthase
Probab=20.72 E-value=35 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=22.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 22 AWYGFMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 22 ~WYGFMfGRESaRkeL~~lIedLr~g~~ 49 (54)
..-|||+|-.--..|+.++++|||+-+.
T Consensus 249 tkSg~MvGLGET~Edv~e~l~~Lrelgv 276 (349)
T PLN02428 249 TKTSIMLGLGETDEEVVQTMEDLRAAGV 276 (349)
T ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCC
Confidence 3457888865678899999999998773
No 240
>PRK06760 hypothetical protein; Provisional
Probab=20.69 E-value=52 Score=23.86 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=24.8
Q ss_pred CcchhHHH-HHHHHHHHHHHHHHHHH---------HHhhhhhHHHHHHHHH
Q 039697 1 MEKRFSLI-QTIATAAAFSAVTAWYG---------FMFGRESARKDLEHLI 41 (54)
Q Consensus 1 m~k~~tL~-QTvatagvFSAvs~WYG---------FMfGRESaRkeL~~lI 41 (54)
|.|.+++. =++...++|||.| +| .|.|-|..+...-+.-
T Consensus 1 MKK~l~i~~~~~i~~~~fsaCS--~~~~~~PaNGvl~iG~E~~~~~I~~~y 49 (223)
T PRK06760 1 MKKTLTIFMLTILLLISFSACS--KKENSFPANGVLIIGDENNISPIINRY 49 (223)
T ss_pred CceeeehHHHHHHHHHHHhccC--CCcccCCccceEEEcchhhHHHHHHHH
Confidence 55666653 4556678888888 55 5677776665554443
No 241
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.63 E-value=54 Score=17.48 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCCC
Q 039697 36 DLEHLIEDLKRGNSP 50 (54)
Q Consensus 36 eL~~lIedLr~g~~~ 50 (54)
.|.++++++.+|...
T Consensus 28 ~l~~~l~~i~~G~~~ 42 (46)
T PF10589_consen 28 QLAEILEKIVRGEGT 42 (46)
T ss_dssp HHHHHHHHHTBT---
T ss_pred HHHHHHHHHHcCCCC
Confidence 789999999998764
No 242
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=20.62 E-value=1.1e+02 Score=17.22 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHhc
Q 039697 30 RESARKDLEHLIEDLKR 46 (54)
Q Consensus 30 RESaRkeL~~lIedLr~ 46 (54)
.+..|++...+.++|++
T Consensus 55 T~~r~~~i~~l~~~L~e 71 (71)
T PF11213_consen 55 TEARRKEIQDLLDRLWE 71 (71)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 35678899999999874
No 243
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=20.49 E-value=1.8e+02 Score=21.59 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 9 QTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 9 QTvatagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
-|.|.|+. |.+|-|.-.+-.+.-|+++...|+.+++
T Consensus 187 DT~AmA~L--ALtCv~~~~~~~~~~~~~i~~~i~~~~~ 222 (326)
T PF01122_consen 187 DTGAMAVL--ALTCVKNSNPNGPELRRRIQQAIRSLVE 222 (326)
T ss_dssp HHHHHHHH--HHHHHHTTTSTTGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHH--HHHHHhccCcCcHhHHHHHHHHHHHHHH
Confidence 56666664 8999998887767788888888888754
No 244
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=20.47 E-value=1.1e+02 Score=23.85 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 039697 15 AAFSAVTAWYGFMFGR 30 (54)
Q Consensus 15 gvFSAvs~WYGFMfGR 30 (54)
+.-....+|-|||.||
T Consensus 274 aa~~~s~~~~~~~vGR 289 (422)
T COG0738 274 AAYYLSFFWVGFMVGR 289 (422)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445678999999999
No 245
>PRK10633 hypothetical protein; Provisional
Probab=20.45 E-value=2.1e+02 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 039697 16 AFSAVTAWYGFMFGRESA 33 (54)
Q Consensus 16 vFSAvs~WYGFMfGRESa 33 (54)
...-+..||+|.++-.+.
T Consensus 19 ~l~y~~~W~~~aY~~~~~ 36 (80)
T PRK10633 19 TLLYLAAWLVAAYLPGNA 36 (80)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 344567899998875543
No 246
>PLN02976 amine oxidase
Probab=20.44 E-value=89 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=25.4
Q ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHhcCCC
Q 039697 21 TAWYGFMFG-RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 21 s~WYGFMfG-RESaRkeL~~lIedLr~g~~ 49 (54)
.-|||+|=| -+|.+++-.+|++.|++|++
T Consensus 1162 ~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1162 KEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 459999988 59999999999999999875
No 247
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.43 E-value=2.3e+02 Score=17.57 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 039697 12 ATAAAFSAVTAWYGFMFGRESARKDLEHLI 41 (54)
Q Consensus 12 atagvFSAvs~WYGFMfGRESaRkeL~~lI 41 (54)
+.+|||+++-+|- +|=-..|++|...|.
T Consensus 9 ~~~~v~~~i~~y~--~~k~~ka~~~~~kL~ 36 (87)
T PF10883_consen 9 GVGAVVALILAYL--WWKVKKAKKQNAKLQ 36 (87)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4445555544443 445567777744443
No 248
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.38 E-value=1.3e+02 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039697 6 SLIQTIATAAAFSAVTAWYGFMF 28 (54)
Q Consensus 6 tL~QTvatagvFSAvs~WYGFMf 28 (54)
.++|+++...+--+++||||+=.
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~l 810 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRL 810 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988888888999999743
No 249
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=20.22 E-value=2.3e+02 Score=17.58 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=17.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCC
Q 039697 25 GFMFGRESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 25 GFMfGRESaRkeL~~lIedLr~g~~~ 50 (54)
|...=|..-++-+.++-+++++|..|
T Consensus 38 G~~llr~~g~~~~~~~~~~~~~g~~p 63 (119)
T PF04186_consen 38 GIWLLRRQGRRALRRLQQSLRQGEMP 63 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 44445566666777777788877654
No 250
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=20.21 E-value=1.2e+02 Score=19.77 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHh
Q 039697 4 RFSLIQTIATAAAFSAVTAWYGFMFG-RESARKDLEHLIEDLK 45 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs~WYGFMfG-RESaRkeL~~lIedLr 45 (54)
..++.+.+..|.+.++..+.. -| +...|++++++.+.+.
T Consensus 269 g~~~~~al~~a~a~aa~~v~~---~G~~~~~~~~~~~~~~~~~ 308 (309)
T PRK10294 269 NASLEEMVRFGVAAGSAATLN---QGTRLCSHDDTQKIYAYLS 308 (309)
T ss_pred CCCHHHHHHHHHHHHHHHhcC---CCCCCCCHHHHHHHHHHhc
Confidence 345667777777777777765 33 3456777777776543
No 251
>PRK14443 acylphosphatase; Provisional
Probab=20.11 E-value=75 Score=19.26 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCCC
Q 039697 34 RKDLEHLIEDLKRGNS 49 (54)
Q Consensus 34 RkeL~~lIedLr~g~~ 49 (54)
..+|..+++.|+.|.|
T Consensus 52 ~~~l~~f~~~l~~g~p 67 (93)
T PRK14443 52 EENLNKFIDAIKKGPS 67 (93)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4569999999999754
No 252
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.01 E-value=1.6e+02 Score=16.93 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHhc
Q 039697 29 GRESARKDLEHLIEDLKR 46 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~ 46 (54)
.-+..+.++..+|+.+|.
T Consensus 83 ~~~~~~~~l~~~v~~~~~ 100 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKN 100 (191)
T ss_pred cHHHHHHHHHHHHHHHHc
Confidence 456778999999999974
Done!