Query 039697
Match_columns 54
No_of_seqs 10 out of 12
Neff 1.6
Searched_HMMs 29240
Date Mon Mar 25 21:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 77.0 1.3 4.5E-05 27.8 1.9 33 13-46 447-479 (491)
2 4gyt_A Uncharacterized protein 74.6 3.2 0.00011 25.9 3.3 28 19-46 107-143 (194)
3 1oqw_A Fimbrial protein; type 73.6 11 0.00037 22.0 5.3 18 5-22 1-21 (144)
4 2hi2_A Fimbrial protein; type 68.4 11 0.00036 22.1 4.4 17 5-21 1-17 (158)
5 3gl3_A Putative thiol:disulfid 66.5 3.3 0.00011 22.2 1.8 21 32-52 128-148 (152)
6 3bqz_B HTH-type transcriptiona 61.4 16 0.00053 19.7 4.0 35 14-50 154-188 (194)
7 3sok_A Fimbrial protein; pilus 57.2 28 0.00095 20.6 5.3 17 5-21 1-20 (151)
8 2d6y_A Putative TETR family re 50.7 21 0.00071 20.1 3.4 20 29-48 171-190 (202)
9 2k85_A Glucocorticoid receptor 50.7 13 0.00043 22.0 2.6 23 24-46 46-68 (69)
10 1vp7_A Exodeoxyribonuclease VI 47.7 16 0.00055 22.3 2.8 21 29-49 31-51 (100)
11 3go6_A Ribokinase RBSK; phosph 47.3 7.8 0.00027 24.5 1.4 43 4-49 265-310 (310)
12 2lja_A Putative thiol-disulfid 47.0 17 0.00058 19.2 2.6 21 33-53 130-150 (152)
13 1x4n_A FAR upstream element bi 44.9 17 0.00059 20.1 2.5 20 30-49 71-90 (92)
14 3twe_A Alpha4H; unknown functi 44.0 13 0.00045 18.8 1.7 14 33-46 6-19 (27)
15 2kuc_A Putative disulphide-iso 43.0 19 0.00067 18.7 2.4 20 34-53 109-128 (130)
16 1b37_A Protein (polyamine oxid 41.7 15 0.00051 24.0 2.1 29 23-51 436-465 (472)
17 1izm_A Hypothetical protein HI 40.9 25 0.00086 21.4 3.0 14 19-32 100-114 (184)
18 3g13_A Putative conjugative tr 40.6 14 0.00047 21.5 1.7 16 33-48 60-75 (169)
19 3ilx_A First ORF in transposon 39.9 51 0.0018 19.3 4.1 34 13-46 109-143 (143)
20 2dg8_A Putative TETR-family tr 39.6 8 0.00028 21.4 0.5 18 32-49 165-182 (193)
21 2vvm_A Monoamine oxidase N; FA 39.3 14 0.00048 24.1 1.7 32 22-53 462-494 (495)
22 2lrn_A Thiol:disulfide interch 39.3 24 0.00083 18.9 2.4 19 34-52 129-147 (152)
23 3raz_A Thioredoxin-related pro 39.2 20 0.00068 19.3 2.1 19 34-52 128-146 (151)
24 2f95_B Sensory rhodopsin II tr 39.0 27 0.00093 18.8 2.6 38 11-48 62-101 (163)
25 2ctf_A Vigilin; K homology typ 37.0 21 0.00073 20.5 2.1 20 30-49 79-98 (102)
26 2dg7_A Putative transcriptiona 36.4 37 0.0013 18.5 2.9 30 17-47 155-184 (195)
27 3pfi_A Holliday junction ATP-d 35.8 24 0.00081 21.8 2.3 26 27-52 31-56 (338)
28 3guv_A Site-specific recombina 35.8 18 0.00063 21.0 1.7 16 33-48 58-73 (167)
29 3ljs_A Fructokinase; fructokia 35.7 27 0.00094 21.8 2.6 46 5-53 290-338 (338)
30 3hs2_A PHD protein, prevent HO 35.3 26 0.0009 17.9 2.1 19 31-49 7-25 (58)
31 2hyt_A TETR-family transcripti 34.3 60 0.0021 17.9 5.0 33 21-53 165-197 (197)
32 2bkr_A Sentrin-specific protea 34.0 22 0.00076 21.7 1.9 16 31-46 196-211 (212)
33 3kdg_A DNA mismatch repair pro 33.8 24 0.00081 21.9 2.0 38 16-53 137-176 (197)
34 2c9o_A RUVB-like 1; hexameric 32.7 23 0.00077 23.9 1.9 25 27-51 39-63 (456)
35 3ne5_B Cation efflux system pr 32.6 9.4 0.00032 25.8 0.0 26 1-26 1-26 (413)
36 2hh3_A KH-type splicing regula 32.5 26 0.00088 20.3 1.9 23 30-52 67-89 (106)
37 2gm5_A Transposon gamma-delta 32.5 14 0.00046 21.5 0.7 16 33-48 43-58 (139)
38 3okq_A BUD site selection prot 32.3 20 0.00069 23.3 1.6 12 35-46 31-42 (141)
39 2lch_A Protein OR38; structura 32.0 30 0.001 19.2 2.1 17 36-52 96-112 (113)
40 3k6q_A Putative ligand binding 31.9 25 0.00085 22.8 2.0 18 32-49 9-26 (139)
41 3s64_A AC-SLP-1, saposin-like 31.6 38 0.0013 20.0 2.6 19 32-50 59-77 (87)
42 3uk6_A RUVB-like 2; hexameric 30.6 27 0.00094 21.6 1.9 24 27-50 46-69 (368)
43 3bvp_A INT, TP901-1 integrase; 30.3 13 0.00046 21.1 0.4 16 33-48 56-71 (138)
44 3pkz_A Recombinase SIN; small 30.2 14 0.00048 20.9 0.5 16 32-47 41-56 (124)
45 1rsg_A FMS1 protein; FAD bindi 29.6 24 0.00084 23.5 1.6 26 23-48 485-511 (516)
46 2whn_A PILC, pilus assembly pr 29.2 42 0.0014 18.0 2.3 19 31-49 46-64 (116)
47 3c1q_A General secretion pathw 29.2 41 0.0014 18.4 2.3 19 31-49 45-63 (123)
48 3ia1_A THIO-disulfide isomeras 29.2 31 0.0011 18.3 1.7 21 33-53 131-151 (154)
49 3lhk_A Putative DNA binding pr 28.4 25 0.00084 20.9 1.4 19 30-48 48-66 (154)
50 3mnl_A KSTR, transcriptional r 28.4 74 0.0025 17.0 4.4 37 13-49 165-201 (203)
51 2r0q_C Putative transposon TN5 27.5 18 0.00063 21.9 0.7 15 33-47 42-56 (209)
52 3jtz_A Integrase; four strande 27.1 46 0.0016 18.7 2.3 24 30-53 61-84 (88)
53 3hry_A PHD protein, prevent HO 26.8 50 0.0017 17.6 2.4 19 31-49 7-25 (73)
54 2lj4_A Peptidyl-prolyl CIS-tra 26.6 46 0.0016 19.2 2.3 19 30-48 34-52 (115)
55 2l57_A Uncharacterized protein 26.5 63 0.0022 16.7 2.7 19 34-52 105-123 (126)
56 1hgv_A PH75 inovirus major coa 26.1 24 0.00082 19.7 1.0 11 7-17 15-25 (46)
57 3gpk_A PPIC-type peptidyl-prol 25.0 66 0.0023 18.5 2.8 20 30-49 22-41 (112)
58 2j7a_C Cytochrome C quinol deh 24.8 39 0.0013 20.0 1.8 22 11-32 15-36 (159)
59 2qby_B CDC6 homolog 3, cell di 24.2 59 0.002 20.0 2.6 23 27-49 22-44 (384)
60 3efg_A Protein SLYX homolog; x 23.6 31 0.0011 19.6 1.2 13 33-45 47-59 (78)
61 1gdt_A GD resolvase, protein ( 23.6 18 0.00063 21.3 0.2 17 32-48 43-59 (183)
62 2w6b_A RHO guanine nucleotide 22.3 50 0.0017 18.9 1.9 13 32-44 38-50 (56)
63 2d9d_A BAG family molecular ch 22.2 76 0.0026 19.6 2.8 21 30-50 65-87 (89)
64 2pv1_A Chaperone SURA; surviVa 22.0 88 0.003 16.9 2.8 18 31-48 22-39 (103)
65 4h08_A Putative hydrolase; GDS 21.4 47 0.0016 18.6 1.6 21 29-49 90-110 (200)
66 3cz5_A Two-component response 21.0 65 0.0022 16.9 2.1 17 37-53 134-150 (153)
67 2jvz_A KH type-splicing, FAR u 20.7 75 0.0026 18.0 2.4 18 30-47 147-164 (164)
68 2bjd_A Acylphosphatase; hypert 20.7 62 0.0021 18.6 2.1 14 34-47 62-75 (101)
69 2vh7_A Acylphosphatase-1; hydr 20.6 62 0.0021 18.3 2.0 17 34-50 56-72 (99)
70 3m9l_A Hydrolase, haloacid deh 20.6 51 0.0017 18.1 1.6 17 36-52 187-203 (205)
71 1ydg_A Trp repressor binding p 20.3 40 0.0014 19.6 1.2 18 36-53 192-209 (211)
72 3me7_A Putative uncharacterize 20.3 83 0.0029 17.7 2.6 21 33-53 149-169 (170)
73 2voc_A Thioredoxin; electron t 20.1 61 0.0021 16.6 1.8 20 34-53 93-112 (112)
74 2r6o_A Putative diguanylate cy 20.0 25 0.00087 22.6 0.3 29 24-52 259-287 (294)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=77.01 E-value=1.3 Score=27.76 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 039697 13 TAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~ 46 (54)
..++++++++-+-+.|-.|+..|.|++ ||++=+
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg~tLee-i~~~f~ 479 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKGKTLEE-LEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCCHHH-HGGGTC
T ss_pred HHHHHHHHHHHHHHheecCCCCCCHHH-HHHHhC
Confidence 345566677777788899999999998 566643
No 2
>4gyt_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, predicted legionella effector; 2.05A {Legionella pneumophila subsp}
Probab=74.58 E-value=3.2 Score=25.88 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=18.1
Q ss_pred HHHHH-HHHHhhhhh--------HHHHHHHHHHHHhc
Q 039697 19 AVTAW-YGFMFGRES--------ARKDLEHLIEDLKR 46 (54)
Q Consensus 19 Avs~W-YGFMfGRES--------aRkeL~~lIedLr~ 46 (54)
|++-| .|||.|-.- .-.|..++|+||+.
T Consensus 107 aL~~Wc~GFL~G~gl~~~~~~~~~~~e~~E~l~dl~~ 143 (194)
T 4gyt_A 107 AFSEWCEGFTQGLTIAGVGMEQFYEEESQDALQHLME 143 (194)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHH
Confidence 45555 566655432 34588899999974
No 3
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=73.61 E-value=11 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=10.0
Q ss_pred hHHHHHH---HHHHHHHHHHH
Q 039697 5 FSLIQTI---ATAAAFSAVTA 22 (54)
Q Consensus 5 ~tL~QTv---atagvFSAvs~ 22 (54)
||||..+ +.-|+.+++..
T Consensus 1 FTLiEllivi~Ii~il~~ia~ 21 (144)
T 1oqw_A 1 FTLIELMIVVAIIGILAAIAI 21 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 5666654 45555555543
No 4
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=68.37 E-value=11 Score=22.13 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 039697 5 FSLIQTIATAAAFSAVT 21 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs 21 (54)
||||..+..-.+++.++
T Consensus 1 fTLiEl~vvi~ii~il~ 17 (158)
T 2hi2_A 1 XTLIELMIVIAIVGILA 17 (158)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 56666554444444333
No 5
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=66.55 E-value=3.3 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCC
Q 039697 32 SARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~~~~p 52 (54)
...++|...|+.++.++++++
T Consensus 128 ~~~~~l~~~i~~~~~~~~~~~ 148 (152)
T 3gl3_A 128 ADKEALEQQILAALGGNEGHH 148 (152)
T ss_dssp TTHHHHHHHHHHHTC------
T ss_pred cCHHHHHHHHHHHHccccccc
Confidence 356899999999999988555
No 6
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=61.42 E-value=16 Score=19.69 Aligned_cols=35 Identities=17% Similarity=-0.044 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Q 039697 14 AAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 14 agvFSAvs~WYGFMfGRESaRkeL~~lIedLr~g~~~ 50 (54)
+.+.+.+..|. .-..++.++.+..+++-+..|-.+
T Consensus 154 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 188 (194)
T 3bqz_B 154 NAVNGIVTFTH--EQNINERIKLMNKFSQIFLNGLSK 188 (194)
T ss_dssp HHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHhhhhh
Confidence 34444555555 455677777888888888777663
No 7
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=57.21 E-value=28 Score=20.63 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=9.2
Q ss_pred hHHHHHH---HHHHHHHHHH
Q 039697 5 FSLIQTI---ATAAAFSAVT 21 (54)
Q Consensus 5 ~tL~QTv---atagvFSAvs 21 (54)
||||..+ +.-|+.+++.
T Consensus 1 FTLiEllvviaIigiLaaia 20 (151)
T 3sok_A 1 FTLIELMIVVAIIGILAAFA 20 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 5666654 4555555544
No 8
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=50.71 E-value=21 Score=20.08 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHHhcCC
Q 039697 29 GRESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~ 48 (54)
+.+...+.+..+++-+.+|-
T Consensus 171 ~~~~~~~~~~~~~~~~~~gl 190 (202)
T 2d6y_A 171 GDAGTDGLRDSIKKAARRIV 190 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 9
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=50.69 E-value=13 Score=21.97 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhc
Q 039697 24 YGFMFGRESARKDLEHLIEDLKR 46 (54)
Q Consensus 24 YGFMfGRESaRkeL~~lIedLr~ 46 (54)
|=+.||.+.|+|=...=|..||.
T Consensus 46 yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 46 YVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHhhc
Confidence 67899999999999999999985
No 10
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=47.72 E-value=16 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
.-|.|.+||..|++.|.+|.-
T Consensus 31 sFEeal~eLEeIV~~LE~gel 51 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTL 51 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHcCCC
Confidence 348899999999999998864
No 11
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=47.26 E-value=7.8 Score=24.51 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhcCCC
Q 039697 4 RFSLIQTIATAAAFSAVTAWYGFMFGRE---SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 4 ~~tL~QTvatagvFSAvs~WYGFMfGRE---SaRkeL~~lIedLr~g~~ 49 (54)
..++.+.+..|..++|.++-. .|-. -.++|+.+++++.|++++
T Consensus 265 g~~l~~a~~~A~~~aa~~v~~---~G~~~~~p~~~ev~~~l~~~~~~~~ 310 (310)
T 3go6_A 265 PAERLRALRRACAAGALATLV---SGVGDCAPAAAAIDAALRANRHNGS 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS---SCSTTCCCCHHHHHHHHHTC-----
T ss_pred CCCHHHHHHHHHHHHHHHhCC---CCCCCCCCCHHHHHHHHHhccCCCC
Confidence 678888898888888887743 2321 257889999888887764
No 12
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=47.01 E-value=17 Score=19.24 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~ph 53 (54)
...+|..+|+.+..+++.+.|
T Consensus 130 ~~~~l~~~l~~~~~~~~~~~~ 150 (152)
T 2lja_A 130 SDPKTAEKFNELLGLEGHHHH 150 (152)
T ss_dssp TCHHHHHHHHHHHTCCSSSSS
T ss_pred CHHHHHHHHHHHhcccccccc
Confidence 456899999999988886654
No 13
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=44.93 E-value=17 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 039697 30 RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~ 49 (54)
-+.|++.+.++|++.|++.+
T Consensus 71 v~~A~~~I~~~i~~~~~~p~ 90 (92)
T 1x4n_A 71 VQSAKRLLDQIVEKGRSGPS 90 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHhcccCCC
Confidence 46788999999999887654
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.00 E-value=13 Score=18.82 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhc
Q 039697 33 ARKDLEHLIEDLKR 46 (54)
Q Consensus 33 aRkeL~~lIedLr~ 46 (54)
.-|||++|-|.||.
T Consensus 6 lykeledlqerlrk 19 (27)
T 3twe_A 6 LYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45888888888763
No 15
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=43.00 E-value=19 Score=18.74 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 039697 34 RKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~~ph 53 (54)
.++|...|+.+.+...+.||
T Consensus 109 ~~~l~~~l~~~~~~~~~~~~ 128 (130)
T 2kuc_A 109 APELLKKVKLGVESEGHHHH 128 (130)
T ss_dssp HHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHHHhcccccc
Confidence 46889999999988887776
No 16
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=41.75 E-value=15 Score=24.04 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHhhh-hhHHHHHHHHHHHHhcCCCCC
Q 039697 23 WYGFMFGR-ESARKDLEHLIEDLKRGNSPP 51 (54)
Q Consensus 23 WYGFMfGR-ESaRkeL~~lIedLr~g~~~~ 51 (54)
|+|+|=|- +|+++.-..|+++|++++-++
T Consensus 436 ~~g~v~GA~~SG~~aA~~i~~~l~~~~~~~ 465 (472)
T 1b37_A 436 YNGYVHGAYLSGIDSAEILINCAQKKMCKY 465 (472)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 78888886 899999999999999877643
No 17
>1izm_A Hypothetical protein HI0817; structural genomics, YGFB, structure 2 function project, S2F, unknown function; 1.95A {Haemophilus influenzae} SCOP: a.199.1.1
Probab=40.87 E-value=25 Score=21.40 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=7.8
Q ss_pred HHHHH-HHHHhhhhh
Q 039697 19 AVTAW-YGFMFGRES 32 (54)
Q Consensus 19 Avs~W-YGFMfGRES 32 (54)
|++-| .|||.|-.-
T Consensus 100 al~~W~~GFl~G~~l 114 (184)
T 1izm_A 100 SLSDWANQFLLGIGL 114 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 33445 577777443
No 18
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=40.64 E-value=14 Score=21.51 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-|.+|..|+++++.|.
T Consensus 60 ~Rp~l~~ll~~~~~g~ 75 (169)
T 3g13_A 60 KREDFQRMINDCMNGE 75 (169)
T ss_dssp CSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHcCC
Confidence 5899999999999884
No 19
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=39.89 E-value=51 Score=19.33 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhc
Q 039697 13 TAAAFSAVTAWYGFMFGRESARK-DLEHLIEDLKR 46 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGRESaRk-eL~~lIedLr~ 46 (54)
...++++++.|+.=+.|.-+.++ ++..-++++|+
T Consensus 109 ~~~i~~~~a~fe~~l~~~R~~~~~k~~~~~~~~~~ 143 (143)
T 3ilx_A 109 VEDLATILVSFSGKLHGMRSQKYEKVKKCAEELKN 143 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 45678888999999999777764 78888888764
No 20
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=39.63 E-value=8 Score=21.41 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 039697 32 SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~~ 49 (54)
-...++.++++++-....
T Consensus 165 ~~~~~~~~~~~~ll~~~~ 182 (193)
T 2dg8_A 165 HGRALTLEAIARITTTDR 182 (193)
T ss_dssp CCHHHHHHHHHHHTCCC-
T ss_pred ccHHHHHHHHHHHHhccC
Confidence 346677777777755443
No 21
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=39.33 E-value=14 Score=24.08 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=21.7
Q ss_pred HHHHHHhh-hhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 22 AWYGFMFG-RESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 22 ~WYGFMfG-RESaRkeL~~lIedLr~g~~~~ph 53 (54)
.|+|+|=| -+|+++.-..+++.|++..+.|+|
T Consensus 462 ~~~g~veGAi~SG~raA~~i~~~l~~~~~~~~~ 494 (495)
T 2vvm_A 462 GWRSFIDGAIEEGTRAARVVLEELGTKREVKAR 494 (495)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCceEEEhHHHHHHHHHHHHHHHhccccCCCCC
Confidence 37888865 588999999999999888777665
No 22
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=39.29 E-value=24 Score=18.94 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 039697 34 RKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~~p 52 (54)
.++|.+.|+.|..+..+++
T Consensus 129 ~~~l~~~l~~l~~~~~~~~ 147 (152)
T 2lrn_A 129 GDDLYNTVEKFVNGAKEGH 147 (152)
T ss_dssp TTHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 4578888888877766443
No 23
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=39.17 E-value=20 Score=19.29 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 039697 34 RKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~~p 52 (54)
..+|...|+.|+.+.++..
T Consensus 128 ~~~l~~~l~~l~~~~~~~~ 146 (151)
T 3raz_A 128 EKSLTDAVKLAHSKCREGH 146 (151)
T ss_dssp HHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 5789999999999887544
No 24
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=38.97 E-value=27 Score=18.81 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHhcCC
Q 039697 11 IATAAAFSAVTAWYGFMFGRESAR--KDLEHLIEDLKRGN 48 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGRESaR--keL~~lIedLr~g~ 48 (54)
+....++.++++..++.+.|--.| ++|.+.++++.+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~~~~i~~Gd 101 (163)
T 2f95_B 62 LGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMGDGD 101 (163)
T ss_dssp HHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 333444445555666666654332 34444555555554
No 25
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.97 E-value=21 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 039697 30 RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~ 49 (54)
-+.|+++|..++++|+..-.
T Consensus 79 V~~a~~~I~~~v~el~~~~~ 98 (102)
T 2ctf_A 79 VSVAQEQIEGMVKDLINRSG 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 36899999999999987543
No 26
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=36.44 E-value=37 Score=18.48 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 039697 17 FSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47 (54)
Q Consensus 17 FSAvs~WYGFMfGRESaRkeL~~lIedLr~g 47 (54)
.+++.-|+. .-+.++.+.-+..+++-|++|
T Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 184 (195)
T 2dg7_A 155 GSAFRRWID-AEGHADFGSCLDTVTDRLRAV 184 (195)
T ss_dssp HHHHHHHHH-TTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHHHH
Confidence 344445551 122344455555555555544
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=35.82 E-value=24 Score=21.79 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHHHHHHHHhcCCCCCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~~~~p 52 (54)
+.|++.+.++|...++..++.+.+++
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~~~~~~ 56 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKRNECLD 56 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSCCC
T ss_pred hCChHHHHHHHHHHHHHHHhcCCCCC
Confidence 57999999999999998876554443
No 28
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=35.79 E-value=18 Score=21.02 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-|.+|..|+++++.|.
T Consensus 58 ~Rp~l~~ll~~~~~g~ 73 (167)
T 3guv_A 58 GRIQFNRMMEDIKSGK 73 (167)
T ss_dssp CCHHHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHcCC
Confidence 4889999999999986
No 29
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=35.69 E-value=27 Score=21.84 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh-h--hHHHHHHHHHHHHhcCCCCCCC
Q 039697 5 FSLIQTIATAAAFSAVTAWYGFMFGR-E--SARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 5 ~tL~QTvatagvFSAvs~WYGFMfGR-E--SaRkeL~~lIedLr~g~~~~ph 53 (54)
.++.+.+..|..+++.++-. .|- . -.++|+..++++.+++.-+|-|
T Consensus 290 ~~l~~al~~A~~~aa~~v~~---~Ga~~~~p~~~ev~~~~~~~~~~~~~~~~ 338 (338)
T 3ljs_A 290 ESIVSTLRFAAAVGALAVTR---QGAFTAMPMLSEVLSLIQEQSEGHHHHHH 338 (338)
T ss_dssp HHHHHHHHHHHHHHGGGC-------CCCCTTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCCCCCCCCHHHHHHHHhhhcccccccCC
Confidence 56777777777777666532 231 1 3588999999999887655544
No 30
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=35.30 E-value=26 Score=17.93 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
.-||+.|+.+++....|.+
T Consensus 7 ~ear~~l~~ll~~v~~~e~ 25 (58)
T 3hs2_A 7 RTARGNLSEVLNNVEAGEE 25 (58)
T ss_dssp HHHHHSHHHHHHHHHTTCC
T ss_pred HHHHHhHHHHHHHHhCCCc
Confidence 4589999999999865543
No 31
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=34.33 E-value=60 Score=17.87 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 21 TAWYGFMFGRESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 21 s~WYGFMfGRESaRkeL~~lIedLr~g~~~~ph 53 (54)
..|+--.-..+.....+...++.+-+|-.++||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 197 (197)
T 2hyt_A 165 AFWIAEGEDGNARLAQGVAALELLLRGLLVKPR 197 (197)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHTTBSSCC
T ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHhccCCC
Confidence 445433223445566677888888888777776
No 32
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=34.04 E-value=22 Score=21.74 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHhc
Q 039697 31 ESARKDLEHLIEDLKR 46 (54)
Q Consensus 31 ESaRkeL~~lIedLr~ 46 (54)
...|+|+-++|..||.
T Consensus 196 ~~~R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 196 TKKRGEWKDLIATLAK 211 (212)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3579999999999974
No 33
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=33.82 E-value=24 Score=21.91 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC--CCC
Q 039697 16 AFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSP--PPH 53 (54)
Q Consensus 16 vFSAvs~WYGFMfGRESaRkeL~~lIedLr~g~~~--~ph 53 (54)
++...+|=-..|+|+.=...|...||++|.+-..| -||
T Consensus 137 ~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpH 176 (197)
T 3kdg_A 137 AAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPH 176 (197)
T ss_dssp HHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTT
T ss_pred HHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCC
Confidence 45667888899999999999999999999876553 455
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=32.68 E-value=23 Score=23.87 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.3
Q ss_pred HhhhhhHHHHHHHHHHHHhcCCCCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGNSPP 51 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~~~~ 51 (54)
+.|.+.+++++..+++.++.|..+|
T Consensus 39 iiG~~~~~~~l~~~~~~~~~~~~~~ 63 (456)
T 2c9o_A 39 LVGQENAREACGVIVELIKSKKMAG 63 (456)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTT
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCC
Confidence 5699999999999999999886543
No 35
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=32.56 E-value=9.4 Score=25.75 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH
Q 039697 1 MEKRFSLIQTIATAAAFSAVTAWYGF 26 (54)
Q Consensus 1 m~k~~tL~QTvatagvFSAvs~WYGF 26 (54)
|.+...++=+++.+++.++..+|||-
T Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~ 26 (413)
T 3ne5_B 1 MKKIALIIGSMIAGGIISAAGFTWVA 26 (413)
T ss_dssp --------------------------
T ss_pred CchHHHHHHHHHHHHHHHHhHHHhcc
Confidence 44444445555667777777888874
No 36
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=32.51 E-value=26 Score=20.29 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCC
Q 039697 30 RESARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~~~p 52 (54)
-+.|++.+.++|++...+.+.+|
T Consensus 67 v~~A~~~I~~ii~~~~~g~~g~~ 89 (106)
T 2hh3_A 67 CEHAARIINDLLQSLRSGPPGPP 89 (106)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhccccCCCCCC
Confidence 36788889999999887766443
No 37
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=32.50 E-value=14 Score=21.51 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-|.+|..|+++++.|.
T Consensus 43 ~Rp~l~~ll~~~~~gd 58 (139)
T 2gm5_A 43 DRKGLDLLRMKVKEGD 58 (139)
T ss_dssp CCHHHHHHHHHCCTTC
T ss_pred ccHHHHHHHHHHHCCC
Confidence 4899999999999873
No 38
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=32.28 E-value=20 Score=23.34 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhc
Q 039697 35 KDLEHLIEDLKR 46 (54)
Q Consensus 35 keL~~lIedLr~ 46 (54)
.+|.++||+||.
T Consensus 31 DDLQD~VE~LRk 42 (141)
T 3okq_A 31 DDLQDVIEIMRK 42 (141)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 468899999984
No 39
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=31.97 E-value=30 Score=19.20 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCCCCCC
Q 039697 36 DLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 36 eL~~lIedLr~g~~~~p 52 (54)
.|..++++++.|+.++|
T Consensus 96 ~l~~~l~~~~~~~~~~~ 112 (113)
T 2lch_A 96 MVTRELDKKVSGSYLVP 112 (113)
T ss_dssp HHHHHHGGGGTCCCSCC
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 34444555555544443
No 40
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=31.86 E-value=25 Score=22.80 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 039697 32 SARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~~ 49 (54)
-||++++++|+...++++
T Consensus 9 eaR~~~s~l~d~vv~~kp 26 (139)
T 3k6q_A 9 EIRNNFSYYIDTVVRDKP 26 (139)
T ss_dssp HHHHTHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 589999999999999866
No 41
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=31.59 E-value=38 Score=19.96 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 039697 32 SARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~~~ 50 (54)
=+-+++.-||+.|++|.+|
T Consensus 59 ~v~~~~d~II~eLe~g~~P 77 (87)
T 3s64_A 59 LAKIEMGAIKTLLENGSAP 77 (87)
T ss_dssp HHHHHHHHHHHHHHTTCCT
T ss_pred HHHHhHHHHHHHHHcCCCH
Confidence 3567899999999999875
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.64 E-value=27 Score=21.62 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=20.6
Q ss_pred HhhhhhHHHHHHHHHHHHhcCCCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~~~ 50 (54)
+.|++.+++.+..+++.++.+..+
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~ 69 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIA 69 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCT
T ss_pred ccChHHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999888764
No 43
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=30.30 E-value=13 Score=21.11 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 039697 33 ARKDLEHLIEDLKRGN 48 (54)
Q Consensus 33 aRkeL~~lIedLr~g~ 48 (54)
-|.+|..++++++.|.
T Consensus 56 ~Rp~l~~ll~~~~~g~ 71 (138)
T 3bvp_A 56 ERPAMQRLINDIENKA 71 (138)
T ss_dssp CCHHHHHHHHGGGGTS
T ss_pred CCHHHHHHHHHHHhCC
Confidence 4899999999999884
No 44
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=30.15 E-value=14 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHhcC
Q 039697 32 SARKDLEHLIEDLKRG 47 (54)
Q Consensus 32 SaRkeL~~lIedLr~g 47 (54)
.-|.+|..+++++|.|
T Consensus 41 ~~Rp~l~~ll~~~~~g 56 (124)
T 3pkz_A 41 ENRPILQKALNFVEMG 56 (124)
T ss_dssp TTCHHHHHHHHHCCTT
T ss_pred hcCHHHHHHHHHHHCC
Confidence 4688999999999987
No 45
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=29.57 E-value=24 Score=23.46 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHhh-hhhHHHHHHHHHHHHhcCC
Q 039697 23 WYGFMFG-RESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 23 WYGFMfG-RESaRkeL~~lIedLr~g~ 48 (54)
|+|+|-| -+|.+++-.+|++.++...
T Consensus 485 ~~g~v~GA~~SG~raA~~i~~~~~~~~ 511 (516)
T 1rsg_A 485 GAGCAYGAWESGRREATRISDLLKLEH 511 (516)
T ss_dssp TBTSHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCccchhHHHHHHHHHHHHHHHhhhhh
Confidence 8899987 5899999999999987654
No 46
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=29.24 E-value=42 Score=17.96 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
.-.++++..+.++++.|.+
T Consensus 46 ~~~~~~~~~i~~~l~~G~s 64 (116)
T 2whn_A 46 RKFREILKQVRTDVEGGMA 64 (116)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCc
Confidence 3457889999999999986
No 47
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=29.21 E-value=41 Score=18.41 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
.-.++.+.++.+++++|.+
T Consensus 45 ~~l~~~l~~i~~~l~~G~s 63 (123)
T 3c1q_A 45 PRIRTMLVAVRAKVTEGYT 63 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 3457889999999999987
No 48
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=29.15 E-value=31 Score=18.31 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~ph 53 (54)
...+|.+.|+.+.++.+.++|
T Consensus 131 ~~~~l~~~l~~~~~~~~~~~~ 151 (154)
T 3ia1_A 131 GREALLDALLLAGADLEGHHH 151 (154)
T ss_dssp CHHHHHHHHHHTTCCC-----
T ss_pred CHHHHHHHHHhccCccccccc
Confidence 356888899988877775553
No 49
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=28.45 E-value=25 Score=20.93 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHhcCC
Q 039697 30 RESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~ 48 (54)
...-|.+|..|+++++.|.
T Consensus 48 ~~~~Rp~l~~ll~~~~~g~ 66 (154)
T 3lhk_A 48 LNEKRKNYKKLLKMVMNRK 66 (154)
T ss_dssp TCTTCHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHcCC
Confidence 3346899999999999884
No 50
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=28.40 E-value=74 Score=17.04 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697 13 TAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 13 tagvFSAvs~WYGFMfGRESaRkeL~~lIedLr~g~~ 49 (54)
.+.+++++..|..--...+...+.+..+++-|-+|-+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (203)
T 3mnl_A 165 SDVWLSNLLAWLTRRASATDVSKRLDLAVRLLIGDQD 201 (203)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHcccC
Confidence 4455566666764333445566677777777766544
No 51
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=27.51 E-value=18 Score=21.85 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcC
Q 039697 33 ARKDLEHLIEDLKRG 47 (54)
Q Consensus 33 aRkeL~~lIedLr~g 47 (54)
-|.+|..|+++++.|
T Consensus 42 ~Rp~l~~ll~~~~~g 56 (209)
T 2r0q_C 42 NRPILQKALNFVRMG 56 (209)
T ss_dssp CCHHHHHHHHHCCTT
T ss_pred cCHHHHHHHHHhhCC
Confidence 589999999999987
No 52
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=27.14 E-value=46 Score=18.72 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCC
Q 039697 30 RESARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~~~ph 53 (54)
-+.||++-.++.+.++.|..|.-|
T Consensus 61 L~~AR~~a~~~r~~l~~Gidp~~~ 84 (88)
T 3jtz_A 61 LSDARQQREGIRKMLALNINLEHH 84 (88)
T ss_dssp HHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHHcCCCchhc
Confidence 367999999999999998876543
No 53
>3hry_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, antitoxin; 2.25A {Escherichia coli} PDB: 3k33_B 3kh2_E
Probab=26.76 E-value=50 Score=17.63 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 039697 31 ESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~~ 49 (54)
.-||+.|+.+++....|.+
T Consensus 7 ~ear~~l~~ll~~v~~~e~ 25 (73)
T 3hry_A 7 RTARGNLSEVLNNVEAGEE 25 (73)
T ss_dssp HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhHHHHHHHHhCCCc
Confidence 3589999999999855443
No 54
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=26.58 E-value=46 Score=19.17 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHhcCC
Q 039697 30 RESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~ 48 (54)
+|-|++++..+.+.|+.|.
T Consensus 34 ~~~a~~~~~~i~~~i~~g~ 52 (115)
T 2lj4_A 34 YEDAIKELQKWSQRIASGE 52 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCc
Confidence 4678899999999999885
No 55
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=26.53 E-value=63 Score=16.72 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 039697 34 RKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~~p 52 (54)
..+|..+|+.+....+++|
T Consensus 105 ~~~l~~~l~~~~~~~~~~~ 123 (126)
T 2l57_A 105 KNNIETILNSLGVKEGHHH 123 (126)
T ss_dssp HHHHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHhccccccc
Confidence 4678888888877666544
No 56
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=26.09 E-value=24 Score=19.66 Aligned_cols=11 Identities=45% Similarity=0.368 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 039697 7 LIQTIATAAAF 17 (54)
Q Consensus 7 L~QTvatagvF 17 (54)
.||.||+|||=
T Consensus 15 yi~~iaaagvg 25 (46)
T 1hgv_A 15 YIQAIAAAGVG 25 (46)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHccch
Confidence 47899999873
No 57
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=24.99 E-value=66 Score=18.54 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 039697 30 RESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g~~ 49 (54)
++.|+++...+++.|+.|.+
T Consensus 22 ~~~a~~~A~~i~~~l~~G~~ 41 (112)
T 3gpk_A 22 KPQVFANAEKIVEQLKQGGS 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 56788999999999998753
No 58
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=24.82 E-value=39 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 039697 11 IATAAAFSAVTAWYGFMFGRES 32 (54)
Q Consensus 11 vatagvFSAvs~WYGFMfGRES 32 (54)
+..+|++..+.+|.||-++-+-
T Consensus 15 ~~~~g~~~g~~~~~~~~~~~~~ 36 (159)
T 2j7a_C 15 LVLGGATLGVVALATVAFGMKY 36 (159)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhc
Confidence 3456777777789999887653
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=24.22 E-value=59 Score=19.98 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=19.1
Q ss_pred HhhhhhHHHHHHHHHHHHhcCCC
Q 039697 27 MFGRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 27 MfGRESaRkeL~~lIedLr~g~~ 49 (54)
++||+...++|...++....++.
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~ 44 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEV 44 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCC
T ss_pred CCChHHHHHHHHHHHHHHHcCCC
Confidence 67999999999999988776654
No 60
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.65 E-value=31 Score=19.64 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q 039697 33 ARKDLEHLIEDLK 45 (54)
Q Consensus 33 aRkeL~~lIedLr 45 (54)
.+++|..|.+.|+
T Consensus 47 L~~ql~~L~~rl~ 59 (78)
T 3efg_A 47 NAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 61
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=23.58 E-value=18 Score=21.31 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhcCC
Q 039697 32 SARKDLEHLIEDLKRGN 48 (54)
Q Consensus 32 SaRkeL~~lIedLr~g~ 48 (54)
.-|.+|..|+++++.|.
T Consensus 43 ~~Rp~l~~ll~~~~~gd 59 (183)
T 1gdt_A 43 SDRKGLDLLRMKVEEGD 59 (183)
T ss_dssp SCCHHHHHHHHHCCTTC
T ss_pred cchHHHHHHHhcCCCCC
Confidence 35889999999999873
No 62
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.31 E-value=50 Score=18.91 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q 039697 32 SARKDLEHLIEDL 44 (54)
Q Consensus 32 SaRkeL~~lIedL 44 (54)
-|||+|+.++..+
T Consensus 38 kARk~LE~~vrk~ 50 (56)
T 2w6b_A 38 RARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999988654
No 63
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.19 E-value=76 Score=19.57 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHH--HHhcCCCC
Q 039697 30 RESARKDLEHLIE--DLKRGNSP 50 (54)
Q Consensus 30 RESaRkeL~~lIe--dLr~g~~~ 50 (54)
|-.|-+|...||+ |||..+|+
T Consensus 65 RRrAV~EvQ~lit~lDlkea~~~ 87 (89)
T 2d9d_A 65 RRRAVIEVQTLITYIDLKESGPS 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC
Confidence 5567778888887 77877764
No 64
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=22.00 E-value=88 Score=16.89 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHhcCC
Q 039697 31 ESARKDLEHLIEDLKRGN 48 (54)
Q Consensus 31 ESaRkeL~~lIedLr~g~ 48 (54)
+.++++...+.+.|+.|.
T Consensus 22 ~~a~~~a~~i~~~l~~g~ 39 (103)
T 2pv1_A 22 NEAESQARAIVDQARNGA 39 (103)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 457888899999998765
No 65
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=21.45 E-value=47 Score=18.63 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHhcCCC
Q 039697 29 GRESARKDLEHLIEDLKRGNS 49 (54)
Q Consensus 29 GRESaRkeL~~lIedLr~g~~ 49 (54)
..|..++.|..+|+.+|..++
T Consensus 90 ~~~~~~~~l~~ii~~l~~~~p 110 (200)
T 4h08_A 90 TEEEYDKSFPKLIKIIRKYAP 110 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHhhhCC
Confidence 346678889999999997665
No 66
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.97 E-value=65 Score=16.88 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCCCCCCC
Q 039697 37 LEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 37 L~~lIedLr~g~~~~ph 53 (54)
...+++++++.+++++|
T Consensus 134 ~~~l~~~~~~~~~~~~~ 150 (153)
T 3cz5_A 134 AQEIAEERVEGREGHHH 150 (153)
T ss_dssp HHHHHHHHHTC------
T ss_pred HHHHHhhcCCCcccccc
Confidence 34567888888775544
No 67
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=20.72 E-value=75 Score=18.03 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHhcC
Q 039697 30 RESARKDLEHLIEDLKRG 47 (54)
Q Consensus 30 RESaRkeL~~lIedLr~g 47 (54)
-+.|++.+.++|++++.|
T Consensus 147 v~~A~~~I~~~i~~~~~g 164 (164)
T 2jvz_A 147 CEHAARIINDLLQSLRSG 164 (164)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhhCC
Confidence 467888888888888765
No 68
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=20.66 E-value=62 Score=18.57 Aligned_cols=14 Identities=36% Similarity=0.722 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcC
Q 039697 34 RKDLEHLIEDLKRG 47 (54)
Q Consensus 34 RkeL~~lIedLr~g 47 (54)
...|..+|+.|+.|
T Consensus 62 ~~~i~~f~~~l~~g 75 (101)
T 2bjd_A 62 EEALSKLLERIKQG 75 (101)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 44588999999987
No 69
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=20.58 E-value=62 Score=18.26 Aligned_cols=17 Identities=29% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCCC
Q 039697 34 RKDLEHLIEDLKRGNSP 50 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~ 50 (54)
...|..+|+.|++.+|+
T Consensus 56 ~~~v~~f~~~l~~~~p~ 72 (99)
T 2vh7_A 56 ISKVRHMQEWLETRGSP 72 (99)
T ss_dssp HHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 34588999999866554
No 70
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=20.55 E-value=51 Score=18.14 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCCCCC
Q 039697 36 DLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 36 eL~~lIedLr~g~~~~p 52 (54)
.+.+|++-|++.++.|.
T Consensus 187 ~~~el~~~~~~~~~~~~ 203 (205)
T 3m9l_A 187 DCAQLRDLLSAEGHHHH 203 (205)
T ss_dssp SHHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHhcccccc
Confidence 47788888888777443
No 71
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=20.34 E-value=40 Score=19.65 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 039697 36 DLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 36 eL~~lIedLr~g~~~~ph 53 (54)
+|...+..|+.|++.+-|
T Consensus 192 ~l~~~~~~~~~~~~~~~~ 209 (211)
T 1ydg_A 192 RQVELTAKLLEGGSHHHH 209 (211)
T ss_dssp HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhcCCccccc
Confidence 455677888999886554
No 72
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=20.34 E-value=83 Score=17.73 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 039697 33 ARKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 33 aRkeL~~lIedLr~g~~~~ph 53 (54)
.-+|+...|+.+.+...++||
T Consensus 149 ~~~~i~~~l~~~~~~~~~~~~ 169 (170)
T 3me7_A 149 NYLEFVNALRLARGEGHHHHH 169 (170)
T ss_dssp CHHHHHHHHHHHTTCSCTTSC
T ss_pred CHHHHHHHHHHhhcccccccC
Confidence 356777777777777777776
No 73
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=20.15 E-value=61 Score=16.58 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 039697 34 RKDLEHLIEDLKRGNSPPPH 53 (54)
Q Consensus 34 RkeL~~lIedLr~g~~~~ph 53 (54)
..+|.++|+++...+.+++|
T Consensus 93 ~~~l~~~l~~~~~~~~~~~~ 112 (112)
T 2voc_A 93 KEALQELVNKHLLEHHHHHH 112 (112)
T ss_dssp HHHHHHHHHTTSCSCCCCC-
T ss_pred HHHHHHHHHHHHHhhcccCC
Confidence 34666666655554444444
No 74
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=20.01 E-value=25 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCCC
Q 039697 24 YGFMFGRESARKDLEHLIEDLKRGNSPPP 52 (54)
Q Consensus 24 YGFMfGRESaRkeL~~lIedLr~g~~~~p 52 (54)
=||.|+|-....++..++..-+..+..|.
T Consensus 259 QGy~~~~P~~~~~~~~~l~~~~~~~~~~~ 287 (294)
T 2r6o_A 259 QGNLMSTPQAADAFASLLDRQKASGQRPV 287 (294)
T ss_dssp CSTTTCCCEEHHHHHHHHHHHHC------
T ss_pred EcCccCCCCCHHHHHHHHHhhhccCCCCC
Confidence 38999998888899888888776666444
Done!