BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039699
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 33 SISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEK 92
S+ P L+++GDQDP +G+ +L N ++++++G GH + D+PE H
Sbjct: 149 SVKTPALIVYGDQDP-------MGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTG 201
Query: 93 MLLWL 97
+L +L
Sbjct: 202 LLDFL 206
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDR 85
+++ +P ++ PVLV+ G+ D TP K + + +V+ V G HC H ++
Sbjct: 254 SVIDRLPDVTAPVLVIAGEHDEATP------KTWQPFVDHIPDVRSHVFPGTSHCTHLEK 307
Query: 86 PE 87
PE
Sbjct: 308 PE 309
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 37 PVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLW 96
PVL++ GDQD P + V + + N KL+ + G HC +D ELV E + +
Sbjct: 191 PVLIVHGDQDEAVPYEASV-----AFSKQYKNCKLVTIPGDTHC-YDHHLELVTEAVKEF 244
Query: 97 LAE 99
+ E
Sbjct: 245 MLE 247
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 8 EEGALDAFVSIVTGP--------PGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYF 59
EE A+D ++ P P P+ + +++P LV+ + DP P P GK+
Sbjct: 202 EERAIDHAGGVLAEPYAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHL 259
Query: 60 SSLPSKLSNVKLIVLEGVGHC 80
+ L + +L + G+GH
Sbjct: 260 AGL---IPTARLAEIPGMGHA 277
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPE 87
+ +++P L+L D P VGKY + L L +E GHCPH P+
Sbjct: 206 LSKVTVPSLILQCADDIIAP--ATVGKY---MHQHLPYSSLKQMEARGHCPHMSHPD 257
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 12 LDAFVSIVTGPPG--PNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV 69
L+ FV + P P+ + I L++WG D F P+D + L S ++
Sbjct: 204 LENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGL-----RLLSGIAGS 258
Query: 70 KLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99
+L + GH + + ++ +L +LA
Sbjct: 259 ELHIFRDCGHWAQWEHADAFNQLVLNFLAR 288
>pdb|1JFR|A Chain A, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
pdb|1JFR|B Chain B, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
Length = 262
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 4 EPANEEGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLP 63
E A +L A + + G N + P + P LV+ D D P+ ++ SLP
Sbjct: 139 EAAKSRTSLKAAIPLT----GWNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLP 194
Query: 64 SKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWL 97
L L L G H + + + + WL
Sbjct: 195 GSLDKAYL-ELRGASHFTPNTSDTTIAKYSISWL 227
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPE 87
I L++WG +D P+ + K ++S+ +S +L ++EG GH + ++PE
Sbjct: 144 KKIRQKTLLVWGSKDHVVPI--ALSKEYASI---ISGSRLEIVEGSGHPVYIEKPE 194
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGH 79
+ + + IP LV+ GD D P+D K +P N +L V EG H
Sbjct: 203 DFTEDLKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIP----NAELKVYEGSSH 252
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPEL 88
+ +P +++P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 222 RALPKLTVPFLLLQGSADR---LCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPEV 278
Query: 89 ---VHEKMLLWLAE 99
V ++ +W+++
Sbjct: 279 TNSVFHEINMWVSQ 292
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPEL 88
+ +P +++P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 239 RALPKLTVPFLLLQGSADR---LCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPEV 295
Query: 89 ---VHEKMLLWLAE 99
V ++ +W+++
Sbjct: 296 TNSVFHEINMWVSQ 309
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPEL 88
+ +P +++P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 240 RALPKLTVPFLLLQGSADR---LCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPEV 296
Query: 89 ---VHEKMLLWLAE 99
V ++ +W+++
Sbjct: 297 TNSVFHEINMWVSQ 310
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVH 90
+P I +P L+L G D P++ + +LPS + + +EG H E V+
Sbjct: 213 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPHGLLWTHAEEVN 268
Query: 91 EKMLLWLAE 99
+L +LA+
Sbjct: 269 TALLAFLAK 277
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVH 90
+P I +P L+L G D P++ + +LPS + + +EG H E V+
Sbjct: 213 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPHGLLWTHAEEVN 268
Query: 91 EKMLLWLAE 99
+L +LA+
Sbjct: 269 TALLAFLAK 277
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVH 90
+P I +P L+L G D P++ + +LPS + + +EG H E V+
Sbjct: 213 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPHGLLWTHAEEVN 268
Query: 91 EKMLLWLAE 99
+L +LA+
Sbjct: 269 TALLAFLAK 277
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPEL 88
+ +P +++P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 239 RALPKLTVPFLLLQGSADR---LCDSKGAYLLXELAKSQDKTLKIYEGAYHVLHKELPEV 295
Query: 89 ---VHEKMLLWLAE 99
V ++ W+++
Sbjct: 296 TNSVFHEINXWVSQ 309
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 37 PVLVLWGDQDPFTPLDG 53
PVL++WG +D PLDG
Sbjct: 252 PVLLIWGREDRVNPLDG 268
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 37 PVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPH 82
PVL++WG +D PLDG + L + L G C H
Sbjct: 232 PVLLIWGREDRVNPLDGAL--------VALKTIPRAQLHVFGQCGH 269
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 1 IIREPANEEGALDAFV-SIVTGP----------PGPNLV--QLMPSISIPVLVLWGDQDP 47
I+R+ NEEG + + S V G P++V + +P+ P L + G P
Sbjct: 148 IMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSP 207
Query: 48 FTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99
+ +Y L ++ + V+ G GH H ++P+ V + +L +
Sbjct: 208 YVS-----EQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 1 IIREPANEEGALDAFV-SIVTGP----------PGPNLV--QLMPSISIPVLVLWGDQDP 47
I+R+ NEEG + + S V G P++V + +P+ P L + G P
Sbjct: 148 IMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSP 207
Query: 48 FTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99
+ +Y L ++ + V+ G GH H ++P+ V + +L +
Sbjct: 208 YVS-----EQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGH 79
+P I +P L+L G D P++ + +LPS + + +EG H
Sbjct: 214 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPH 258
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 2 IREPANEEGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSS 61
I A+ +G LD +T + + + +IP L++ GD D P + +
Sbjct: 192 IAAGASPKGTLDC----ITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA 247
Query: 62 LPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99
+P N K+ +++G H + + +E +LL+L +
Sbjct: 248 IP----NSKVALIKGGPHGLNATHAKEFNEALLLFLKD 281
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 4 EPANEEGALDAFVSIVTGPPGPNLVQLMPSIS-IPVLVLWGDQD---PFTPLDGPVGKYF 59
+P N G + + + + P L ++S +PV ++WG D P+ PL V KY+
Sbjct: 204 KPDNIHGGFNYYRANIR-PDAALWTDLDHTMSDLPVTMIWGLGDTCVPYAPLIEFVPKYY 262
Query: 60 SSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKM 93
S N + +E GH ++PE+ +++
Sbjct: 263 S-------NYTMETIEDCGHFLMVEKPEIAIDRI 289
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 9 EGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTP 50
E +D P G L+P + P L++ G++DP P
Sbjct: 170 EKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 9 EGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTP 50
E +D P G L+P + P L++ G++DP P
Sbjct: 170 EKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 9 EGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTP 50
E +D P G L+P + P L++ G++DP P
Sbjct: 170 EKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 23 PGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSS-LPSKLSNVKLIVLEGVGHCP 81
P N + +I+ PVLV+ D TP Y + L N + + + GH
Sbjct: 219 PQTNRLPAYRNIAAPVLVIGFADDVVTP------PYLGREVADALPNGRYLQIPDAGHLG 272
Query: 82 HDDRPELVHEKMLLWLAE 99
+RPE V+ ML + A
Sbjct: 273 FFERPEAVNTAMLKFFAS 290
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 2 IREPANEEGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSS 61
+ E E A D V+ + P + +SIP L+L+ D P + G GK ++
Sbjct: 46 VLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGK--AA 103
Query: 62 LPSKLSNV 69
L +LS+V
Sbjct: 104 LLRELSDV 111
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 24 GPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV---KLIVLEGVGHC 80
G N ++ +P+ V+ G +PF LD + S + K N+ K V++ GH
Sbjct: 197 GGNQRDIVAEAQLPIAVVNGRDEPFVELD-----FVSKV--KFGNLWEGKTHVIDNAGHA 249
Query: 81 PHDDRP 86
P + P
Sbjct: 250 PFREAP 255
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 24 GPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV---KLIVLEGVGHC 80
G N ++ +P+ V+ G +PF LD + S + K N+ K V++ GH
Sbjct: 197 GGNQRDIVAEAQLPIAVVNGRDEPFVELD-----FVSKV--KFGNLWEGKTHVIDNAGHA 249
Query: 81 PHDDRP 86
P + P
Sbjct: 250 PFREAP 255
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 26 NLVQLMPSISIPVLVLWGDQDPFTPL-DGPVGKYFSSLPSKL-SNVKLIVLEGVGH 79
+ + I+IPVLV+ GD D P D V L +KL N KLI +G H
Sbjct: 211 DFTNDLKGITIPVLVIHGDDDQVVPYADSGV------LSAKLVKNGKLITYKGAPH 260
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 1 IIREPANEEGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFS 60
++ E A E A D V+ + P + +SIP L+L+ D P + G GK +
Sbjct: 51 VLEEIATER-ATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGK--A 107
Query: 61 SLPSKLSNV 69
+L +LS+V
Sbjct: 108 ALLRELSDV 116
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 1 IIREPANEEGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFS 60
++ E A E A D V+ + P + +SIP L+L+ D P + G GK +
Sbjct: 48 VLEEIATER-ATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGK--A 104
Query: 61 SLPSKLSNV 69
+L +LS+V
Sbjct: 105 ALLRELSDV 113
>pdb|3GIW|A Chain A, Crystal Structure Of A Duf574 Family Protein (sav_2177)
From Streptomyces Avermitilis Ma-4680 At 1.45 A
Resolution
pdb|3GO4|A Chain A, Crystal Structure Of A Duf574 Family Protein (Sav_2177)
From Streptomyces Avermitilis Ma-4680 At 1.80 A
Resolution
Length = 277
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 8 EEGALDAFVSIVTG-PPGPNLVQLMPSISIPVLVLWGDQDPF 48
+E + F+ I TG P PNL ++ S++ V++ D DP
Sbjct: 75 KEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPI 116
>pdb|2F6K|A Chain A, Crystal Structure Of Amidohydrorolase Ii; Northeast
Structural Genomics Target Lpr24
pdb|2F6K|B Chain B, Crystal Structure Of Amidohydrorolase Ii; Northeast
Structural Genomics Target Lpr24
Length = 307
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 19 VTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVG 78
V G P + + S++ P +L+G P+TPLDG L L+ L+ E
Sbjct: 240 VAGAVLPRQLPTLXSLAQPEHLLYGSDIPYTPLDGS-----RQLGHALATTDLLTNEQKQ 294
Query: 79 HCPHDDRPELVHE 91
+D+ L+ E
Sbjct: 295 AIFYDNAHRLLTE 307
>pdb|3RNF|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
Length = 498
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSALTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 24 GPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV---KLIVLEGVGHC 80
G N ++ +P+ V+ G PF LD + S + K N+ K V++ GH
Sbjct: 197 GGNQRDIVAEAQLPIAVVNGRDGPFVELD-----FVSKV--KFGNLWEGKTHVIDNAGHA 249
Query: 81 PHDDRP 86
P + P
Sbjct: 250 PFREAP 255
>pdb|3RNG|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 498
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3RNC|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
Length = 498
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3N1X|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
Length = 498
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|1T0Q|A Chain A, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|A Chain A, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
Length = 498
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3RNA|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
Length = 498
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3N1Z|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
Length = 498
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3N1Y|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
Length = 498
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|2RDB|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
Length = 498
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3RNB|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
Length = 498
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|3N20|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
Length = 498
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|2INC|A Chain A, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
pdb|2IND|A Chain A, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 491
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 259 VAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWI 297
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 25 PNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV----KLIVLEGVGHC 80
PNL + I +P L+L G+ D + F + K++N+ K ++ GH
Sbjct: 197 PNLWPRLKEIKVPTLILAGEYD----------EKFVQIAKKMANLIPNSKCKLISATGHT 246
Query: 81 PHDDRPELVHEKMLLWLAETFN 102
H + + +L +L E N
Sbjct: 247 IHVEDSDEFDTMILGFLKEEQN 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.142 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,559,532
Number of Sequences: 62578
Number of extensions: 139517
Number of successful extensions: 306
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 61
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)