Query 039699
Match_columns 103
No_of_seqs 132 out of 1136
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02679 hydrolase, alpha/beta 99.6 1.6E-15 3.5E-20 101.2 7.8 91 12-102 269-359 (360)
2 PLN02824 hydrolase, alpha/beta 99.5 1.7E-14 3.8E-19 93.4 6.6 67 28-99 227-293 (294)
3 PRK10349 carboxylesterase BioH 99.5 3.1E-14 6.7E-19 90.5 4.8 69 26-99 187-255 (256)
4 TIGR03343 biphenyl_bphD 2-hydr 99.5 5.4E-14 1.2E-18 90.3 5.6 67 27-98 215-281 (282)
5 PLN02965 Probable pheophorbida 99.5 9.5E-14 2.1E-18 88.5 5.3 66 30-100 188-253 (255)
6 TIGR01738 bioH putative pimelo 99.5 1.1E-13 2.3E-18 86.1 5.2 67 26-97 179-245 (245)
7 KOG1454 Predicted hydrolase/ac 99.5 1.8E-13 3.8E-18 90.4 6.2 71 26-101 254-325 (326)
8 PLN02578 hydrolase 99.4 7.4E-13 1.6E-17 88.2 7.7 68 25-98 286-353 (354)
9 PRK06489 hypothetical protein; 99.4 5.1E-13 1.1E-17 89.1 6.1 73 25-101 282-358 (360)
10 PRK03592 haloalkane dehalogena 99.4 2.2E-13 4.8E-18 88.3 3.9 69 29-101 222-290 (295)
11 TIGR02240 PHA_depoly_arom poly 99.4 8.3E-13 1.8E-17 85.0 5.3 67 29-101 201-267 (276)
12 PRK07581 hypothetical protein; 99.4 7.4E-13 1.6E-17 87.5 5.1 70 26-100 266-336 (339)
13 TIGR03056 bchO_mg_che_rel puta 99.4 1.8E-12 3.9E-17 82.7 6.5 65 29-98 214-278 (278)
14 PRK00870 haloalkane dehalogena 99.4 9.8E-13 2.1E-17 85.6 5.3 66 29-100 233-301 (302)
15 TIGR03611 RutD pyrimidine util 99.4 1.5E-12 3.1E-17 81.8 5.1 68 27-99 190-257 (257)
16 PRK03204 haloalkane dehalogena 99.4 1.2E-12 2.6E-17 84.9 4.8 60 35-98 227-286 (286)
17 KOG2984 Predicted hydrolase [G 99.3 3.4E-12 7.5E-17 78.7 6.4 72 23-99 204-275 (277)
18 PRK10673 acyl-CoA esterase; Pr 99.3 2.2E-12 4.8E-17 81.6 5.7 65 30-99 190-254 (255)
19 PLN03087 BODYGUARD 1 domain co 99.3 2.2E-12 4.7E-17 88.9 5.1 64 32-100 415-479 (481)
20 TIGR02427 protocat_pcaD 3-oxoa 99.3 3.4E-12 7.4E-17 79.5 5.6 68 26-98 184-251 (251)
21 PRK00175 metX homoserine O-ace 99.3 8.6E-13 1.9E-17 88.7 3.0 71 26-101 300-375 (379)
22 TIGR01392 homoserO_Ac_trn homo 99.3 1.2E-12 2.6E-17 87.0 3.2 68 26-98 279-351 (351)
23 PRK08775 homoserine O-acetyltr 99.3 3.4E-12 7.3E-17 84.7 3.2 65 31-100 273-339 (343)
24 PLN02385 hydrolase; alpha/beta 99.2 1E-11 2.2E-16 82.5 5.0 69 28-101 272-346 (349)
25 TIGR01250 pro_imino_pep_2 prol 99.2 1.2E-11 2.5E-16 78.7 5.0 65 28-98 224-288 (288)
26 PLN03084 alpha/beta hydrolase 99.2 2.2E-11 4.8E-16 82.1 5.6 61 33-99 323-383 (383)
27 KOG4178 Soluble epoxide hydrol 99.2 3.4E-11 7.3E-16 78.6 6.2 87 9-101 234-321 (322)
28 PRK11126 2-succinyl-6-hydroxy- 99.2 3.8E-11 8.2E-16 75.5 6.0 64 25-99 178-241 (242)
29 TIGR03695 menH_SHCHC 2-succiny 99.2 4.3E-11 9.3E-16 74.3 5.4 67 26-98 185-251 (251)
30 PRK06765 homoserine O-acetyltr 99.2 5.1E-11 1.1E-15 80.5 5.2 69 26-99 314-387 (389)
31 PHA02857 monoglyceride lipase; 99.2 9.8E-11 2.1E-15 75.2 5.9 69 28-101 202-274 (276)
32 KOG2382 Predicted alpha/beta h 99.2 7.1E-11 1.5E-15 77.1 5.1 64 32-100 250-313 (315)
33 PLN02894 hydrolase, alpha/beta 99.1 9.7E-11 2.1E-15 79.4 5.9 69 26-100 316-385 (402)
34 PLN02511 hydrolase 99.1 1.4E-10 3E-15 78.4 5.0 69 28-100 291-365 (388)
35 PRK14875 acetoin dehydrogenase 99.1 2.4E-10 5.1E-15 76.1 4.7 65 27-99 306-370 (371)
36 PLN02980 2-oxoglutarate decarb 99.0 4.1E-10 9E-15 86.8 5.9 71 25-101 1558-1640(1655)
37 PLN02211 methyl indole-3-aceta 99.0 7.4E-10 1.6E-14 71.6 6.1 64 31-100 206-270 (273)
38 PLN02298 hydrolase, alpha/beta 99.0 3.6E-10 7.8E-15 74.5 4.4 67 29-100 245-317 (330)
39 PF12697 Abhydrolase_6: Alpha/ 99.0 4.2E-11 9E-16 73.4 -0.5 62 26-92 167-228 (228)
40 PRK05855 short chain dehydroge 99.0 1E-09 2.2E-14 76.7 5.9 64 31-100 229-292 (582)
41 PRK10749 lysophospholipase L2; 99.0 5.3E-10 1.1E-14 73.9 3.7 67 29-100 253-329 (330)
42 PLN02652 hydrolase; alpha/beta 98.9 1.9E-09 4.1E-14 73.1 5.0 68 28-100 317-387 (395)
43 PF00561 Abhydrolase_1: alpha/ 98.9 4.4E-10 9.6E-15 69.6 1.4 63 27-94 167-229 (230)
44 PRK10985 putative hydrolase; P 98.8 1.4E-08 3E-13 67.1 5.2 69 27-100 247-320 (324)
45 TIGR01249 pro_imino_pep_1 prol 98.7 2.3E-08 4.9E-13 65.5 4.3 64 28-99 240-304 (306)
46 PRK05077 frsA fermentation/res 98.6 9.4E-08 2E-12 65.3 5.7 61 32-100 352-412 (414)
47 KOG4409 Predicted hydrolase/ac 98.6 9.2E-08 2E-12 63.4 5.3 64 31-100 297-364 (365)
48 COG0596 MhpC Predicted hydrola 98.6 1.1E-07 2.4E-12 58.7 5.5 66 28-98 214-280 (282)
49 COG3208 GrsT Predicted thioest 98.6 9E-08 2E-12 60.6 3.8 89 3-98 145-234 (244)
50 TIGR03100 hydr1_PEP hydrolase, 98.5 4.3E-08 9.3E-13 63.4 1.4 69 29-99 201-274 (274)
51 TIGR01607 PST-A Plasmodium sub 98.5 3.7E-07 8.1E-12 60.7 5.4 59 35-98 270-331 (332)
52 PLN02872 triacylglycerol lipas 98.5 3.5E-07 7.5E-12 62.2 5.1 65 31-100 319-389 (395)
53 PF08386 Abhydrolase_4: TAP-li 98.5 4.4E-07 9.5E-12 50.8 4.7 61 34-99 33-93 (103)
54 PRK07868 acyl-CoA synthetase; 98.4 2.6E-07 5.6E-12 69.0 4.1 67 30-101 292-362 (994)
55 PF00326 Peptidase_S9: Prolyl 98.4 2.5E-07 5.4E-12 57.6 3.4 67 34-101 143-210 (213)
56 TIGR01838 PHA_synth_I poly(R)- 98.4 2.5E-07 5.3E-12 65.0 3.0 56 27-87 407-462 (532)
57 COG0429 Predicted hydrolase of 98.4 1.9E-06 4E-11 57.0 6.6 69 27-100 266-340 (345)
58 PRK10566 esterase; Provisional 98.3 1.4E-06 3E-11 55.2 4.1 63 29-100 179-248 (249)
59 KOG2551 Phospholipase/carboxyh 98.2 2.8E-06 6.1E-11 53.3 5.1 61 31-99 159-219 (230)
60 TIGR01836 PHA_synth_III_C poly 98.2 1.5E-06 3.4E-11 58.0 3.3 63 31-99 282-349 (350)
61 KOG1552 Predicted alpha/beta h 98.2 5.3E-06 1.1E-10 53.1 5.1 67 28-100 185-252 (258)
62 COG1647 Esterase/lipase [Gener 98.1 1.9E-06 4.2E-11 54.1 2.4 68 27-99 173-243 (243)
63 PRK13604 luxD acyl transferase 98.1 9.1E-06 2E-10 53.6 5.0 55 29-89 196-252 (307)
64 COG1506 DAP2 Dipeptidyl aminop 98.1 9.6E-06 2.1E-10 58.1 5.4 70 31-101 547-617 (620)
65 PRK11071 esterase YqiA; Provis 98.0 7.2E-06 1.6E-10 50.6 4.0 55 34-98 135-189 (190)
66 COG2267 PldB Lysophospholipase 98.0 1.7E-05 3.7E-10 52.2 5.7 68 29-101 222-295 (298)
67 KOG1455 Lysophospholipase [Lip 98.0 5.7E-06 1.2E-10 54.1 2.9 70 26-100 237-312 (313)
68 PF08840 BAAT_C: BAAT / Acyl-C 98.0 1.9E-06 4.2E-11 54.1 0.5 51 31-81 111-163 (213)
69 PRK11460 putative hydrolase; P 97.9 9.3E-06 2E-10 51.5 2.8 64 33-97 146-209 (232)
70 KOG4667 Predicted esterase [Li 97.8 3.2E-05 7E-10 48.7 3.4 58 34-97 198-255 (269)
71 PF12695 Abhydrolase_5: Alpha/ 97.8 7.2E-06 1.6E-10 47.6 0.5 48 28-80 97-145 (145)
72 PF01738 DLH: Dienelactone hyd 97.7 2.8E-05 6.2E-10 48.6 2.9 68 31-99 141-216 (218)
73 PF08538 DUF1749: Protein of u 97.6 3.3E-05 7.2E-10 50.8 2.2 73 26-98 223-303 (303)
74 PF03096 Ndr: Ndr family; Int 97.6 9E-05 2E-09 48.4 3.5 69 26-100 210-279 (283)
75 COG2945 Predicted hydrolase of 97.6 0.00016 3.5E-09 44.7 4.2 62 30-98 144-205 (210)
76 PF02230 Abhydrolase_2: Phosph 97.5 5.7E-05 1.2E-09 47.3 2.1 60 35-99 155-214 (216)
77 KOG1838 Alpha/beta hydrolase [ 97.5 0.00064 1.4E-08 46.5 6.4 70 26-99 313-387 (409)
78 KOG2931 Differentiation-relate 97.4 0.0012 2.7E-08 43.4 7.4 61 33-99 244-305 (326)
79 PLN02442 S-formylglutathione h 97.4 0.00016 3.6E-09 47.1 3.5 51 32-82 214-264 (283)
80 KOG4391 Predicted alpha/beta h 97.4 0.00018 3.9E-09 45.6 3.3 67 28-100 214-282 (300)
81 PTZ00472 serine carboxypeptida 97.2 0.00067 1.5E-08 47.3 4.5 65 35-100 364-459 (462)
82 PF03959 FSH1: Serine hydrolas 97.2 7.3E-05 1.6E-09 46.9 -0.3 50 31-86 157-207 (212)
83 COG1073 Hydrolases of the alph 97.2 0.0014 2.9E-08 42.0 5.5 69 27-100 223-297 (299)
84 PF05705 DUF829: Eukaryotic pr 97.1 0.00053 1.1E-08 43.6 3.1 64 33-97 176-240 (240)
85 COG2021 MET2 Homoserine acetyl 97.1 0.00076 1.6E-08 45.5 3.7 68 27-99 298-367 (368)
86 PF10142 PhoPQ_related: PhoPQ- 97.1 0.0015 3.3E-08 44.3 5.0 62 30-99 257-319 (367)
87 PF00450 Peptidase_S10: Serine 97.0 0.00052 1.1E-08 46.6 2.6 64 35-98 330-414 (415)
88 PF06821 Ser_hydrolase: Serine 96.9 0.00042 9E-09 42.2 1.0 52 32-89 111-162 (171)
89 KOG2564 Predicted acetyltransf 96.9 0.0026 5.7E-08 41.8 4.7 61 32-100 267-327 (343)
90 KOG3043 Predicted hydrolase re 96.9 0.0017 3.7E-08 41.2 3.7 71 28-100 157-240 (242)
91 COG0412 Dienelactone hydrolase 96.7 0.0086 1.9E-07 38.3 6.1 70 31-101 154-234 (236)
92 PF05448 AXE1: Acetyl xylan es 96.6 0.005 1.1E-07 41.1 4.7 62 29-99 256-319 (320)
93 COG0400 Predicted esterase [Ge 96.6 0.0022 4.8E-08 40.3 2.6 60 34-99 145-204 (207)
94 COG3571 Predicted hydrolase of 96.5 0.0068 1.5E-07 36.9 4.3 67 29-101 136-212 (213)
95 TIGR01849 PHB_depoly_PhaZ poly 96.5 0.0018 4E-08 44.5 2.1 64 31-99 333-405 (406)
96 PF09752 DUF2048: Uncharacteri 96.5 0.005 1.1E-07 41.5 3.9 58 35-98 289-347 (348)
97 PLN02213 sinapoylglucose-malat 96.3 0.012 2.6E-07 39.2 5.3 64 35-100 233-317 (319)
98 PRK10162 acetyl esterase; Prov 96.3 0.01 2.3E-07 39.4 4.9 62 36-100 249-315 (318)
99 PRK05371 x-prolyl-dipeptidyl a 96.3 0.012 2.5E-07 43.7 5.3 72 26-99 446-518 (767)
100 KOG1282 Serine carboxypeptidas 96.2 0.015 3.2E-07 40.7 5.3 65 36-100 364-448 (454)
101 PLN02209 serine carboxypeptida 96.0 0.018 3.9E-07 40.1 5.0 65 35-100 351-435 (437)
102 KOG2565 Predicted hydrolases o 96.0 0.0086 1.9E-07 40.9 3.2 84 9-100 379-463 (469)
103 TIGR02821 fghA_ester_D S-formy 95.8 0.027 5.9E-07 36.6 5.0 50 34-83 210-259 (275)
104 PF05728 UPF0227: Uncharacteri 95.7 0.028 6.2E-07 34.8 4.3 54 35-98 134-187 (187)
105 PLN03016 sinapoylglucose-malat 95.6 0.034 7.4E-07 38.7 5.1 65 35-100 347-431 (433)
106 COG3243 PhaC Poly(3-hydroxyalk 95.6 0.0081 1.7E-07 41.5 1.9 50 31-86 326-376 (445)
107 PRK10115 protease 2; Provision 95.6 0.035 7.7E-07 40.8 5.1 58 30-88 600-661 (686)
108 TIGR01839 PHA_synth_II poly(R) 95.4 0.018 3.8E-07 41.3 3.2 50 31-86 437-487 (560)
109 PF07859 Abhydrolase_3: alpha/ 94.8 0.0059 1.3E-07 37.7 -0.6 44 36-82 167-210 (211)
110 KOG3253 Predicted alpha/beta h 94.7 0.087 1.9E-06 38.3 4.8 50 29-83 298-348 (784)
111 PF03583 LIP: Secretory lipase 94.6 0.034 7.4E-07 36.6 2.6 48 34-82 218-266 (290)
112 KOG2112 Lysophospholipase [Lip 94.5 0.059 1.3E-06 33.9 3.3 60 35-99 144-203 (206)
113 COG3545 Predicted esterase of 94.0 0.038 8.2E-07 33.9 1.7 62 32-99 114-178 (181)
114 PF02273 Acyl_transf_2: Acyl t 93.9 0.2 4.4E-06 32.7 4.9 56 29-90 189-246 (294)
115 PF06057 VirJ: Bacterial virul 93.8 0.42 9E-06 29.8 6.0 62 26-99 129-191 (192)
116 KOG1551 Uncharacterized conser 93.8 0.23 4.9E-06 32.9 5.0 58 38-101 309-367 (371)
117 KOG1515 Arylacetamide deacetyl 93.7 0.085 1.8E-06 35.7 3.1 64 33-99 265-334 (336)
118 PLN00021 chlorophyllase 93.6 0.41 8.9E-06 32.0 6.2 51 33-86 187-246 (313)
119 PF00975 Thioesterase: Thioest 93.1 0.17 3.6E-06 31.5 3.7 60 35-97 168-229 (229)
120 PF06850 PHB_depo_C: PHB de-po 92.8 0.18 4E-06 31.5 3.4 62 36-99 135-201 (202)
121 KOG3975 Uncharacterized conser 92.4 0.24 5.1E-06 32.4 3.6 57 35-97 242-300 (301)
122 PF11339 DUF3141: Protein of u 92.3 0.38 8.2E-06 34.5 4.7 64 30-97 292-365 (581)
123 COG3458 Acetyl esterase (deace 92.0 0.61 1.3E-05 31.0 5.1 62 31-100 255-317 (321)
124 COG4188 Predicted dienelactone 91.8 0.22 4.7E-06 34.0 3.0 57 29-89 245-303 (365)
125 COG4287 PqaA PhoPQ-activated p 91.4 0.49 1.1E-05 32.7 4.3 59 32-98 326-385 (507)
126 COG0657 Aes Esterase/lipase [L 91.3 0.47 1E-05 31.3 4.2 61 35-98 245-308 (312)
127 COG4757 Predicted alpha/beta h 90.8 0.14 3E-06 33.1 1.3 67 26-97 207-280 (281)
128 KOG4627 Kynurenine formamidase 90.7 0.086 1.9E-06 33.5 0.3 50 31-85 203-252 (270)
129 PF07519 Tannase: Tannase and 90.4 0.7 1.5E-05 32.8 4.6 66 33-99 351-426 (474)
130 PRK04940 hypothetical protein; 89.8 0.96 2.1E-05 28.0 4.3 54 36-99 125-179 (180)
131 KOG2100 Dipeptidyl aminopeptid 89.0 0.98 2.1E-05 33.9 4.6 70 29-99 675-746 (755)
132 smart00824 PKS_TE Thioesterase 88.9 1 2.2E-05 27.1 4.1 60 32-96 150-211 (212)
133 PF05576 Peptidase_S37: PS-10 88.4 1.7 3.6E-05 30.5 5.1 57 35-98 351-412 (448)
134 COG2939 Carboxypeptidase C (ca 88.3 1.8 3.8E-05 31.0 5.2 63 36-99 426-490 (498)
135 KOG2624 Triglyceride lipase-ch 87.9 1.2 2.6E-05 31.0 4.2 64 31-99 328-397 (403)
136 PF06500 DUF1100: Alpha/beta h 86.6 0.76 1.7E-05 32.0 2.7 60 32-99 349-408 (411)
137 PRK10252 entF enterobactin syn 82.3 3.2 6.8E-05 32.7 4.6 49 32-86 1233-1281(1296)
138 PF06342 DUF1057: Alpha/beta h 78.7 1.7 3.8E-05 28.9 2.0 87 10-97 185-296 (297)
139 PF10605 3HBOH: 3HB-oligomer h 76.4 4.1 8.8E-05 30.1 3.4 49 32-80 551-603 (690)
140 TIGR01840 esterase_phb esteras 75.4 1.7 3.7E-05 27.0 1.2 19 35-53 168-186 (212)
141 PF02129 Peptidase_S15: X-Pro 75.1 1.7 3.6E-05 28.2 1.2 49 29-80 222-271 (272)
142 PF12740 Chlorophyllase2: Chlo 63.9 18 0.0004 23.8 4.1 50 34-86 153-211 (259)
143 PF10230 DUF2305: Uncharacteri 63.8 8.1 0.00018 25.2 2.5 40 35-79 221-263 (266)
144 KOG1283 Serine carboxypeptidas 63.1 5 0.00011 27.5 1.5 33 64-96 378-410 (414)
145 COG4553 DepA Poly-beta-hydroxy 61.1 13 0.00029 25.3 3.1 64 36-101 340-408 (415)
146 PF06500 DUF1100: Alpha/beta h 60.2 8.8 0.00019 27.0 2.3 62 34-101 188-256 (411)
147 PF04301 DUF452: Protein of un 59.9 5 0.00011 25.6 1.0 37 39-83 169-205 (213)
148 KOG2521 Uncharacterized conser 56.9 18 0.00039 25.0 3.3 64 35-99 225-289 (350)
149 PF03403 PAF-AH_p_II: Platelet 56.5 4.5 9.8E-05 27.9 0.4 52 31-86 270-321 (379)
150 PF10503 Esterase_phd: Esteras 54.8 9.8 0.00021 24.3 1.7 17 36-52 170-186 (220)
151 KOG3847 Phospholipase A2 (plat 54.8 23 0.00049 24.4 3.4 65 30-98 282-346 (399)
152 PF06289 FlbD: Flagellar prote 53.3 24 0.00052 17.8 2.6 34 65-99 24-57 (60)
153 COG3319 Thioesterase domains o 50.1 60 0.0013 21.4 4.8 39 61-100 212-252 (257)
154 COG1582 FlgEa Uncharacterized 49.7 36 0.00078 17.4 3.0 42 58-101 18-59 (67)
155 cd08769 DAP_dppA_2 Peptidase M 48.6 63 0.0014 21.5 4.7 55 32-97 144-200 (270)
156 PF05577 Peptidase_S28: Serine 47.8 31 0.00067 24.1 3.4 37 36-80 377-413 (434)
157 PF06028 DUF915: Alpha/beta hy 46.9 22 0.00047 23.3 2.4 60 35-97 184-252 (255)
158 COG4099 Predicted peptidase [G 43.0 26 0.00055 24.0 2.3 24 31-54 310-334 (387)
159 COG3946 VirJ Type IV secretory 39.4 1.4E+02 0.0031 21.4 6.0 59 26-98 386-447 (456)
160 COG3411 Ferredoxin [Energy pro 39.2 57 0.0012 16.7 2.9 30 68-98 17-46 (64)
161 PF10929 DUF2811: Protein of u 38.7 39 0.00084 16.9 2.0 19 84-102 5-23 (57)
162 cd03148 GATase1_EcHsp31_like T 37.5 65 0.0014 20.7 3.5 31 68-99 96-128 (232)
163 PF06107 DUF951: Bacterial pro 36.1 19 0.00042 17.9 0.8 28 68-97 29-56 (57)
164 PLN02733 phosphatidylcholine-s 35.3 36 0.00078 24.2 2.2 29 69-99 393-421 (440)
165 TIGR00976 /NonD putative hydro 34.5 80 0.0017 22.9 3.9 23 29-51 226-248 (550)
166 COG0420 SbcD DNA repair exonuc 32.7 72 0.0016 22.0 3.3 21 31-51 71-91 (390)
167 cd00281 DAP_dppA Peptidase M55 31.3 1.6E+02 0.0035 19.6 4.7 55 32-97 143-199 (265)
168 COG0693 ThiJ Putative intracel 30.9 67 0.0015 19.4 2.7 32 68-99 66-98 (188)
169 COG2830 Uncharacterized protei 29.6 41 0.00088 20.9 1.5 33 41-81 170-202 (214)
170 TIGR02069 cyanophycinase cyano 29.5 1.5E+02 0.0033 19.3 4.2 36 39-79 2-39 (250)
171 KOG4150 Predicted ATP-dependen 27.5 89 0.0019 23.7 3.1 44 36-79 899-942 (1034)
172 cd08770 DAP_dppA_3 Peptidase M 25.8 2.1E+02 0.0045 19.1 4.4 55 32-97 144-199 (263)
173 PF13709 DUF4159: Domain of un 25.4 1E+02 0.0022 19.5 2.9 39 34-77 52-90 (207)
174 cd03145 GAT1_cyanophycinase Ty 24.9 1.9E+02 0.0041 18.3 4.1 11 68-78 29-39 (217)
175 COG2382 Fes Enterochelin ester 24.7 99 0.0021 21.0 2.8 40 43-86 247-286 (299)
176 PF08384 NPP: Pro-opiomelanoco 24.6 48 0.001 15.7 1.0 15 69-83 30-44 (45)
177 KOG2281 Dipeptidyl aminopeptid 23.9 1.5E+02 0.0032 22.9 3.7 67 32-99 799-866 (867)
178 PF10367 Vps39_2: Vacuolar sor 23.0 62 0.0013 17.5 1.4 18 67-85 89-106 (109)
179 PRK15118 universal stress glob 22.4 60 0.0013 18.5 1.3 18 29-46 125-142 (144)
180 TIGR00583 mre11 DNA repair pro 22.2 69 0.0015 22.6 1.8 18 33-50 108-125 (405)
181 PLN02606 palmitoyl-protein thi 22.0 1.5E+02 0.0033 20.2 3.3 31 68-101 267-297 (306)
182 PF04275 P-mevalo_kinase: Phos 21.7 94 0.002 17.9 2.0 36 12-47 64-100 (116)
183 COG3910 Predicted ATPase [Gene 21.5 2.2E+02 0.0047 18.5 3.6 35 66-100 193-227 (233)
184 cd03147 GATase1_Ydr533c_like T 20.6 1.5E+02 0.0032 19.1 3.0 31 68-99 94-126 (231)
No 1
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.63 E-value=1.6e-15 Score=101.15 Aligned_cols=91 Identities=80% Similarity=1.425 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCCCCCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHH
Q 039699 12 LDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHE 91 (103)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~ 91 (103)
...+.+........+....+.++++|+++|+|++|.+++.+..+.+..+.+.+.++++++.+++++||++++|+|+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~ 348 (360)
T PLN02679 269 LDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHE 348 (360)
T ss_pred HHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHH
Confidence 34444444333334455667889999999999999998876211112345677789999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 039699 92 KMLLWLAETFN 102 (103)
Q Consensus 92 ~i~~fl~~~~~ 102 (103)
.|.+|+++.++
T Consensus 349 ~I~~FL~~~~~ 359 (360)
T PLN02679 349 KLLPWLAQLPS 359 (360)
T ss_pred HHHHHHHhcCC
Confidence 99999987653
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.54 E-value=1.7e-14 Score=93.41 Aligned_cols=67 Identities=37% Similarity=0.795 Sum_probs=60.4
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
...+.++++|+++|+|++|..++.+ ..+.+.+..++.++.+++++||++++|+|+++++.|.+|+++
T Consensus 227 ~~~l~~i~~P~lvi~G~~D~~~~~~-----~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 227 EELLPAVKCPVLIAWGEKDPWEPVE-----LGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred HHHHhhcCCCeEEEEecCCCCCChH-----HHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 4557889999999999999999887 567788877889999999999999999999999999999975
No 3
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.50 E-value=3.1e-14 Score=90.53 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=61.9
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
+....+.++++|+++++|++|..++.+ ..+.+++.++++++++++++||++++|+|+.|++.|..|-++
T Consensus 187 ~~~~~l~~i~~P~lii~G~~D~~~~~~-----~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 187 DLRQPLQNVSMPFLRLYGYLDGLVPRK-----VVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred ccHHHHhhcCCCeEEEecCCCccCCHH-----HHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 455667889999999999999998887 567888888999999999999999999999999999999764
No 4
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.49 E-value=5.4e-14 Score=90.25 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=61.1
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
....++++++|+++++|++|..++.+ ..+.+++.+|++++.+++++||+++.|+|+.+++.|.+|++
T Consensus 215 ~~~~l~~i~~Pvlli~G~~D~~v~~~-----~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 215 VTARLGEIKAKTLVTWGRDDRFVPLD-----HGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred HHHHHhhCCCCEEEEEccCCCcCCch-----hHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 44557889999999999999999887 67888888999999999999999999999999999999986
No 5
>PLN02965 Probable pheophorbidase
Probab=99.47 E-value=9.5e-14 Score=88.47 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=60.5
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
.+..+++|+++++|++|..+++. ..+.+++.++++++.+++++||++++|+|++|++.|.+|++.+
T Consensus 188 ~~~~i~vP~lvi~g~~D~~~~~~-----~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 188 NPEAEKVPRVYIKTAKDNLFDPV-----RQDVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred hhhcCCCCEEEEEcCCCCCCCHH-----HHHHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHh
Confidence 34579999999999999999887 7888999999999999999999999999999999999998864
No 6
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.46 E-value=1.1e-13 Score=86.14 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=59.3
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
+....+.++++|+++++|++|..++.+ ..+.+.+.+++.++.+++++||++++++|+++++.|.+|+
T Consensus 179 ~~~~~l~~i~~Pvlii~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 179 DLRQPLQNISVPFLRLYGYLDGLVPAK-----VVPYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred cHHHHHhcCCCCEEEEeecCCcccCHH-----HHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 344556789999999999999999887 5677778889999999999999999999999999999985
No 7
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=90.44 Aligned_cols=71 Identities=39% Similarity=0.713 Sum_probs=63.2
Q ss_pred CccccCCccC-ccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhhc
Q 039699 26 NLVQLMPSIS-IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 26 ~~~~~~~~i~-~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~~ 101 (103)
+....+.++. +|++|+||+.|+.++.+ ..+.+.+.+|++++++++++||.+|++.|+++++.|..|++...
T Consensus 254 ~~~~~~~~i~~~pvlii~G~~D~~~p~~-----~~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 254 NLLSLIKKIWKCPVLIIWGDKDQIVPLE-----LAEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARLR 325 (326)
T ss_pred hHHHhhccccCCceEEEEcCcCCccCHH-----HHHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHhc
Confidence 4444567777 99999999999999998 67888888899999999999999999999999999999998754
No 8
>PLN02578 hydrolase
Probab=99.43 E-value=7.4e-13 Score=88.21 Aligned_cols=68 Identities=37% Similarity=0.748 Sum_probs=60.3
Q ss_pred CCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 25 PNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 25 ~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
.+..+.+.++++|+++|+|++|.+++.+ ..+.+.+.+++.+++++ ++||+++.|+|+++++.|.+|++
T Consensus 286 ~~~~~~l~~i~~PvLiI~G~~D~~v~~~-----~~~~l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 286 YTLDSLLSKLSCPLLLLWGDLDPWVGPA-----KAEKIKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCHHHHhhcCCCCEEEEEeCCCCCCCHH-----HHHHHHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 3455667899999999999999998887 57888888899999999 58999999999999999999986
No 9
>PRK06489 hypothetical protein; Provisional
Probab=99.41 E-value=5.1e-13 Score=89.09 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=61.7
Q ss_pred CCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCC----CCCCCCCChHHHHHHHHHHHHhh
Q 039699 25 PNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV----GHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 25 ~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
.+..+.+.+|++|+++|+|++|..++.+.+ .++.+++.+|++++++++++ ||.++ ++|+.|++.|.+|++..
T Consensus 282 ~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~---~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 282 YNPSPDLEKIKAPVLAINSADDERNPPETG---VMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred cChHHHHHhCCCCEEEEecCCCcccChhhH---HHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhc
Confidence 355667889999999999999999988720 12677888999999999996 99997 89999999999999876
Q ss_pred c
Q 039699 101 F 101 (103)
Q Consensus 101 ~ 101 (103)
.
T Consensus 358 ~ 358 (360)
T PRK06489 358 P 358 (360)
T ss_pred c
Confidence 4
No 10
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.40 E-value=2.2e-13 Score=88.30 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=57.2
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhhc
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~~ 101 (103)
..+.++++|+++|+|++|..+++.. ..+.+.+..+++++++++++||++++++|+++++.|.+|+++..
T Consensus 222 ~~l~~i~~P~lii~G~~D~~~~~~~----~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 222 QWLATSDVPKLLINAEPGAILTTGA----IRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred HHhccCCCCeEEEeccCCcccCcHH----HHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhc
Confidence 3467899999999999999985542 23344555678999999999999999999999999999998753
No 11
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.38 E-value=8.3e-13 Score=84.96 Aligned_cols=67 Identities=33% Similarity=0.477 Sum_probs=60.3
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhhc
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~~ 101 (103)
..+.++++|+++|+|++|++++.+ ..+++.+.++++++.++++ ||++++++|+++++.|.+|+++..
T Consensus 201 ~~l~~i~~P~lii~G~~D~~v~~~-----~~~~l~~~~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 201 HWLHKIQQPTLVLAGDDDPIIPLI-----NMRLLAWRIPNAELHIIDD-GHLFLITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred hHhhcCCCCEEEEEeCCCCcCCHH-----HHHHHHHhCCCCEEEEEcC-CCchhhccHHHHHHHHHHHHHHhh
Confidence 457889999999999999999988 6788888899999999985 999999999999999999998753
No 12
>PRK07581 hypothetical protein; Validated
Probab=99.38 E-value=7.4e-13 Score=87.51 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=63.0
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecC-CCCCCCCCChHHHHHHHHHHHHhh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEG-VGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+....+.++++|+++|+|++|..++.. ..+.+.+.+++++++++++ +||++++++|+.+...|.+|++..
T Consensus 266 d~~~~L~~I~~PtLvI~G~~D~~~p~~-----~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 266 DLAAALGSITAKTFVMPISTDLYFPPE-----DCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHH-----HHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 455667889999999999999999887 5678888889999999998 899999999999999999999874
No 13
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.37 E-value=1.8e-12 Score=82.66 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=58.9
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
..+.++++|+++++|++|..++.. ..+.+.+.+++.++..++++||+++++.|+++++.|.+|++
T Consensus 214 ~~~~~i~~P~lii~g~~D~~vp~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 214 RDLPRITIPLHLIAGEEDKAVPPD-----ESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred hhcccCCCCEEEEEeCCCcccCHH-----HHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 456788999999999999999887 67788888899999999999999999999999999999984
No 14
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.37 E-value=9.8e-13 Score=85.63 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=57.6
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCce---EEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVK---LIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
..+.++++|+++|+|++|..++.. . +.+.+.+++.+ +.+++++||++++++|+++++.|.+|++..
T Consensus 233 ~~l~~i~~P~lii~G~~D~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 233 AVLERWDKPFLTAFSDSDPITGGG-----D-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HhhhcCCCceEEEecCCCCcccCc-----h-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 346789999999999999998876 3 67777778765 889999999999999999999999999864
No 15
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.35 E-value=1.5e-12 Score=81.80 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=60.2
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
....+..+++|+++++|++|..++.+ ..+.+.+.+++.++..++++||++++++|+++.+.|.+|+++
T Consensus 190 ~~~~~~~i~~P~l~i~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 190 VSARLDRIQHPVLLIANRDDMLVPYT-----QSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred cHHHhcccCccEEEEecCcCcccCHH-----HHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 44556789999999999999999887 567777888999999999999999999999999999999863
No 16
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.35 E-value=1.2e-12 Score=84.91 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=53.5
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
++|+++|+|++|.++++.. ..+.+++.+|+.++.+++++||++++++|+++++.|.+|+.
T Consensus 227 ~~PtliI~G~~D~~~~~~~----~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~~ 286 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKT----ILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERFG 286 (286)
T ss_pred CCCeEEEecCCCcccCcHH----HHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhcC
Confidence 8999999999999876541 35778888999999999999999999999999999999973
No 17
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.35 E-value=3.4e-12 Score=78.70 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=64.7
Q ss_pred CCCCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 23 PGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 23 ~~~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.+.-++-.+++++||++|++|..|++++.. ..-.+..+.+.+++.+.|.++|.+++.-+++|+..+.+||++
T Consensus 204 dG~fCr~~lp~vkcPtli~hG~kDp~~~~~-----hv~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 204 DGRFCRLVLPQVKCPTLIMHGGKDPFCGDP-----HVCFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCchHhhhcccccCCeeEeeCCcCCCCCCC-----CccchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhc
Confidence 334456668999999999999999999988 678888888999999999999999999999999999999986
No 18
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.35 E-value=2.2e-12 Score=81.63 Aligned_cols=65 Identities=23% Similarity=0.521 Sum_probs=59.1
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.+..+++|+++|+|++|..++.+ ..+.+++.++++++.+++++||++++++|+++.+.|.+|+..
T Consensus 190 ~~~~~~~P~l~i~G~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 190 KIPAWPHPALFIRGGNSPYVTEA-----YRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred ccCCCCCCeEEEECCCCCCCCHH-----HHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 35678899999999999988877 678888889999999999999999999999999999999974
No 19
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.33 E-value=2.2e-12 Score=88.94 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=58.7
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHHHhh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAET 100 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~~ 100 (103)
+++++|+++++|++|..+|.+ ..+.+++.+|++++.+++++||++++ ++|+.+++.|.+|++..
T Consensus 415 ~~I~vPtLII~Ge~D~ivP~~-----~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 415 DQLKCDVAIFHGGDDELIPVE-----CSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred HhCCCCEEEEEECCCCCCCHH-----HHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 368999999999999999988 67888899999999999999999886 99999999999999754
No 20
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.32 E-value=3.4e-12 Score=79.47 Aligned_cols=68 Identities=24% Similarity=0.475 Sum_probs=59.5
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
+....+.++++|+++++|++|..++.+ ..+.+.+.+++.++..++++||++++++|+.+.+.|.+|++
T Consensus 184 ~~~~~~~~~~~Pvlii~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 184 DFRDRLGAIAVPTLCIAGDQDGSTPPE-----LVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred cHHHHhhhcCCCeEEEEeccCCcCChH-----HHHHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 344556788999999999999999987 56777777888999999999999999999999999999974
No 21
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.32 E-value=8.6e-13 Score=88.66 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=61.9
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCc----eEEEec-CCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV----KLIVLE-GVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~-~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+.++.+.+|++|+++|+|++|.+++++ ..+.+++.++++ ++.+++ ++||++++++|+++++.|.+||++.
T Consensus 300 d~~~~l~~I~~PtLvI~G~~D~~~p~~-----~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 300 DLAAALARIKARFLVVSFTSDWLFPPA-----RSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERA 374 (379)
T ss_pred CHHHHHhcCCCCEEEEEECCccccCHH-----HHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhh
Confidence 456778899999999999999999888 677788888876 777775 8999999999999999999999875
Q ss_pred c
Q 039699 101 F 101 (103)
Q Consensus 101 ~ 101 (103)
.
T Consensus 375 ~ 375 (379)
T PRK00175 375 A 375 (379)
T ss_pred h
Confidence 3
No 22
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.31 E-value=1.2e-12 Score=87.03 Aligned_cols=68 Identities=22% Similarity=0.193 Sum_probs=59.8
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEE-----EecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLI-----VLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
+..+.+.+|++|+++|+|++|.+++++ ..+.+++.++++++. +++++||++++++|+++++.|.+||+
T Consensus 279 ~~~~~l~~I~~P~Lvi~G~~D~~~p~~-----~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 279 SLTEALSRIKAPFLVVSITSDWLFPPA-----ESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred CHHHHHhhCCCCEEEEEeCCccccCHH-----HHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 456778899999999999999999988 678888888887765 56789999999999999999999984
No 23
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.26 E-value=3.4e-12 Score=84.67 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCC-CCceEEEecC-CCCCCCCCChHHHHHHHHHHHHhh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEG-VGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+.+|++|+++++|++|.+++.+ ..+.+.+.+ ++++++++++ +||++++|+|++|++.|.+||++.
T Consensus 273 l~~I~~PtLvi~G~~D~~~p~~-----~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 273 PEAIRVPTVVVAVEGDRLVPLA-----DLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRST 339 (343)
T ss_pred hhcCCCCeEEEEeCCCEeeCHH-----HHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhc
Confidence 5789999999999999999876 456676666 6899999985 999999999999999999999864
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.25 E-value=1e-11 Score=82.52 Aligned_cols=69 Identities=26% Similarity=0.389 Sum_probs=57.5
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC--CCceEEEecCCCCCCCCCChHH----HHHHHHHHHHhhc
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVGHCPHDDRPEL----VHEKMLLWLAETF 101 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~~~p~~----~~~~i~~fl~~~~ 101 (103)
...+.++++|+++|+|++|.+++.. ..+.+.+.+ ++.++++++++||+++.++|++ +.+.|.+||++..
T Consensus 272 ~~~l~~i~~P~Lii~G~~D~vv~~~-----~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 272 EMQLEEVSLPLLILHGEADKVTDPS-----VSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHhcccCCCCEEEEEeCCCCccChH-----HHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 3446789999999999999999987 456665555 5689999999999999999987 7788999998754
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.25 E-value=1.2e-11 Score=78.68 Aligned_cols=65 Identities=15% Similarity=0.308 Sum_probs=56.0
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
...+..+++|+++++|++|.. ++. ..+.+++.+++.++.+++++||+++.++|+++.+.|.+|++
T Consensus 224 ~~~l~~i~~P~lii~G~~D~~-~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 224 TDKLSEIKVPTLLTVGEFDTM-TPE-----AAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHhhccCCCEEEEecCCCcc-CHH-----HHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 345678899999999999985 444 46777778889999999999999999999999999999984
No 26
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.22 E-value=2.2e-11 Score=82.11 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=53.9
Q ss_pred ccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 33 SISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 33 ~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.+++|+++|+|++|.+++.+ ..+.+++. ++.++.+++++||++++|+|+++++.|.+|+++
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~-----~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYD-----GVEDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHH-----HHHHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 57999999999999988877 56666665 588999999999999999999999999999863
No 27
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.22 E-value=3.4e-11 Score=78.65 Aligned_cols=87 Identities=24% Similarity=0.484 Sum_probs=67.9
Q ss_pred hhHHHHHHHHhcCCCCCCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCc-eEEEecCCCCCCCCCChH
Q 039699 9 EGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV-KLIVLEGVGHCPHDDRPE 87 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~~~p~ 87 (103)
.+-+.+|+.+...+. .....+.++++|+++++|+.|.+.+... ..+.+++.++.. +..+++++|||+++|+|+
T Consensus 234 ~gplNyyrn~~r~w~--a~~~~~~~i~iPv~fi~G~~D~v~~~p~----~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~ 307 (322)
T KOG4178|consen 234 TGPLNYYRNFRRNWE--AAPWALAKITIPVLFIWGDLDPVLPYPI----FGELYRKDVPRLTERVVIEGIGHFVQQEKPQ 307 (322)
T ss_pred cccchhhHHHhhCch--hccccccccccceEEEEecCcccccchh----HHHHHHHhhccccceEEecCCcccccccCHH
Confidence 344556666655443 3344567899999999999999877652 456777777875 788999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 039699 88 LVHEKMLLWLAETF 101 (103)
Q Consensus 88 ~~~~~i~~fl~~~~ 101 (103)
++++.|.+|+++..
T Consensus 308 ~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 308 EVNQAILGFINSFS 321 (322)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998753
No 28
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.21 E-value=3.8e-11 Score=75.54 Aligned_cols=64 Identities=22% Similarity=0.405 Sum_probs=52.5
Q ss_pred CCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 25 PNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 25 ~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.+..+.+.++++|+++++|++|..+. .+++. .++++++++++||++++|+|+++++.|..|++.
T Consensus 178 ~~~~~~l~~i~~P~lii~G~~D~~~~----------~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 178 PDLRPALQALTFPFYYLCGERDSKFQ----------ALAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred CcHHHHhhccCCCeEEEEeCCcchHH----------HHHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 34556778999999999999998542 11222 378999999999999999999999999999975
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.19 E-value=4.3e-11 Score=74.31 Aligned_cols=67 Identities=27% Similarity=0.468 Sum_probs=56.6
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
+....+..+++|+++++|++|..++ . ..+.+.+..++.++..++++||++++++|+.+.+.|.+|++
T Consensus 185 ~~~~~~~~~~~P~l~i~g~~D~~~~-~-----~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 185 SLWPKLQALTIPVLYLCGEKDEKFV-Q-----IAKEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred chHHHhhCCCCceEEEeeCcchHHH-H-----HHHHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 3444567899999999999998654 3 35667777889999999999999999999999999999974
No 30
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.17 E-value=5.1e-11 Score=80.50 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=59.5
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC----CceEEEecC-CCCCCCCCChHHHHHHHHHHHHh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS----NVKLIVLEG-VGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~-~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
+..+.+..+++|+++|+|++|.+++.+ ..+.+.+.++ +++++++++ +||..++++|+.+++.|.+|+++
T Consensus 314 dl~~~L~~I~~PtLvI~G~~D~l~p~~-----~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 314 SLEEALSNIEANVLMIPCKQDLLQPPR-----YNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHH-----HHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 456678899999999999999999987 5566666665 689999985 89999999999999999999975
No 31
>PHA02857 monoglyceride lipase; Provisional
Probab=99.15 E-value=9.8e-11 Score=75.19 Aligned_cols=69 Identities=19% Similarity=0.395 Sum_probs=57.4
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC-CCceEEEecCCCCCCCCCCh---HHHHHHHHHHHHhhc
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVGHCPHDDRP---ELVHEKMLLWLAETF 101 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~~~~ 101 (103)
...+.++++|+++++|++|.+++.+ ..+.+.+.+ ++.++.+++++||.++.|++ +++.+.+.+|++...
T Consensus 202 ~~~l~~i~~Pvliv~G~~D~i~~~~-----~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 202 RKIIPKIKTPILILQGTNNEISDVS-----GAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHhcccCCCCEEEEecCCCCcCChH-----HHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 3457789999999999999999988 566766655 46899999999999999877 467788899998753
No 32
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.15 E-value=7.1e-11 Score=77.08 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=59.3
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
.....||+++.|.++.+++.+ ....+.+.+|.+++..++++|||+|.|+|+.|.+.|.+|+...
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~-----~~~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDE-----HYPRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChh-----HHHHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 678899999999999999988 6788888899999999999999999999999999999998754
No 33
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.15 E-value=9.7e-11 Score=79.44 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=54.9
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC-CCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+....+..+++|+++|+|++|.+.+.. .+.+.+.. +..++++++++||++++|+|+.|++.|.+|++..
T Consensus 316 ~~~~~l~~I~vP~liI~G~~D~i~~~~------~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 316 PLLESASEWKVPTTFIYGRHDWMNYEG------AVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKY 385 (402)
T ss_pred hHhhhcccCCCCEEEEEeCCCCCCcHH------HHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHh
Confidence 444557889999999999999876533 33343333 3588999999999999999999999999998764
No 34
>PLN02511 hydrolase
Probab=99.10 E-value=1.4e-10 Score=78.39 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=56.6
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHH------HHHHHHHHHHhh
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPEL------VHEKMLLWLAET 100 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~------~~~~i~~fl~~~ 100 (103)
...+.+|++|+++|+|++|++++... ......+.++++++++++++||..++|+|+. +.+.+.+|++..
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p~~~----~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAPARG----IPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCCccc----CcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHH
Confidence 45678899999999999999998762 1133456678999999999999999999875 588999999763
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.06 E-value=2.4e-10 Score=76.06 Aligned_cols=65 Identities=34% Similarity=0.582 Sum_probs=54.5
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
....+..+++|+++++|++|..++.. ..+.+ .++.++.+++++||++++++|+++++.|.+|+++
T Consensus 306 ~~~~l~~i~~Pvlii~g~~D~~vp~~-----~~~~l---~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 306 LRDRLASLAIPVLVIWGEQDRIIPAA-----HAQGL---PDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred HHHHHhcCCCCEEEEEECCCCccCHH-----HHhhc---cCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 34456788999999999999998876 33433 2468999999999999999999999999999975
No 36
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.04 E-value=4.1e-10 Score=86.80 Aligned_cols=71 Identities=17% Similarity=0.332 Sum_probs=56.9
Q ss_pred CCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC------------ceEEEecCCCCCCCCCChHHHHHH
Q 039699 25 PNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN------------VKLIVLEGVGHCPHDDRPELVHEK 92 (103)
Q Consensus 25 ~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~gH~~~~~~p~~~~~~ 92 (103)
.+.++.+.++++|+++|+|++|..++ . ..+++.+.+++ +++.+++++||++++|+|+++++.
T Consensus 1558 ~dl~~~L~~I~~PtLlI~Ge~D~~~~-~-----~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~ 1631 (1655)
T PLN02980 1558 PSLWEDLKQCDTPLLLVVGEKDVKFK-Q-----IAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRA 1631 (1655)
T ss_pred chHHHHHhhCCCCEEEEEECCCCccH-H-----HHHHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHH
Confidence 34556788999999999999999764 3 23444444443 589999999999999999999999
Q ss_pred HHHHHHhhc
Q 039699 93 MLLWLAETF 101 (103)
Q Consensus 93 i~~fl~~~~ 101 (103)
|.+|+++..
T Consensus 1632 I~~FL~~~~ 1640 (1655)
T PLN02980 1632 LRKFLTRLH 1640 (1655)
T ss_pred HHHHHHhcc
Confidence 999998743
No 37
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.04 E-value=7.4e-10 Score=71.62 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=56.1
Q ss_pred CCcc-CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 31 MPSI-SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 31 ~~~i-~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
...+ ++|+++|+|++|..+|++ ..+.+.+.+++.++..++ +||.+++++|+++.+.|.++....
T Consensus 206 ~~~~~~vP~l~I~g~~D~~ip~~-----~~~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~~ 270 (273)
T PLN02211 206 TGDIDKVPRVYIKTLHDHVVKPE-----QQEAMIKRWPPSQVYELE-SDHSPFFSTPFLLFGLLIKAAASV 270 (273)
T ss_pred ccccCccceEEEEeCCCCCCCHH-----HHHHHHHhCCccEEEEEC-CCCCccccCHHHHHHHHHHHHHHh
Confidence 3455 789999999999999988 677888888888999997 799999999999999999987654
No 38
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.02 E-value=3.6e-10 Score=74.50 Aligned_cols=67 Identities=27% Similarity=0.442 Sum_probs=54.4
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC--CCceEEEecCCCCCCCCCChHH----HHHHHHHHHHhh
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVGHCPHDDRPEL----VHEKMLLWLAET 100 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~~~p~~----~~~~i~~fl~~~ 100 (103)
..+.++++|+|+++|++|.+++.+ ..+.+.+.+ ++.++.+++++||.+++++|+. +.+.|.+|+...
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp~~-----~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTDPD-----VSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNER 317 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCCHH-----HHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 446789999999999999999988 556665554 4689999999999999998864 566778888764
No 39
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.01 E-value=4.2e-11 Score=73.40 Aligned_cols=62 Identities=37% Similarity=0.705 Sum_probs=53.8
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEK 92 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~ 92 (103)
+....+..+++|+++++|++|..++.+ ..+.+.+.+++.++.+++++||++++++|++++++
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVPPE-----SAEELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSHHH-----HHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred cccccccccCCCeEEeecCCCCCCCHH-----HHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 344556788999999999999999866 67888877899999999999999999999999764
No 40
>PRK05855 short chain dehydrogenase; Validated
Probab=98.99 E-value=1e-09 Score=76.67 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=56.0
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+..+++|+++|+|++|.+++.. ..+.+.+.+++.++.+++ +||++++++|+++.+.|.+|+...
T Consensus 229 ~~~~~~P~lii~G~~D~~v~~~-----~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 229 ERYTDVPVQLIVPTGDPYVRPA-----LYDDLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAV 292 (582)
T ss_pred cCCccCceEEEEeCCCcccCHH-----HhccccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhc
Confidence 4568999999999999999987 567777778888888887 699999999999999999999864
No 41
>PRK10749 lysophospholipase L2; Provisional
Probab=98.97 E-value=5.3e-10 Score=73.93 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=53.0
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC-------CCceEEEecCCCCCCCCCCh---HHHHHHHHHHHH
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-------SNVKLIVLEGVGHCPHDDRP---ELVHEKMLLWLA 98 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~ 98 (103)
..+.++++|+|+|+|++|.+++.+ ..+.+.+.+ ++.++++++++||.++.|.+ +.+.+.|.+|++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~-----~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~ 327 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNR-----MHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFN 327 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHH-----HHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHh
Confidence 446789999999999999999987 344444332 45689999999999999886 567788889987
Q ss_pred hh
Q 039699 99 ET 100 (103)
Q Consensus 99 ~~ 100 (103)
+.
T Consensus 328 ~~ 329 (330)
T PRK10749 328 RH 329 (330)
T ss_pred hc
Confidence 64
No 42
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.92 E-value=1.9e-09 Score=73.12 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=55.8
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC--CceEEEecCCCCCCCCC-ChHHHHHHHHHHHHhh
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVGHCPHDD-RPELVHEKMLLWLAET 100 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~~-~p~~~~~~i~~fl~~~ 100 (103)
.+.+.++++|+++++|++|.+++.+ ..+.+.+.++ +.++.++++++|.++.+ .++++.+.+.+|++..
T Consensus 317 ~~~L~~I~vPvLIi~G~~D~vvp~~-----~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 317 TRNFKSVTVPFMVLHGTADRVTDPL-----ASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred HhhcccCCCCEEEEEeCCCCCCCHH-----HHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 3456789999999999999999987 4555544433 47899999999998776 7899999999999864
No 43
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.91 E-value=4.4e-10 Score=69.62 Aligned_cols=63 Identities=27% Similarity=0.648 Sum_probs=56.2
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHH
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKML 94 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~ 94 (103)
....+..+++|+++++|++|.+++.. ....+.+.+|+.++.+++++||+.+++.|+++++.|.
T Consensus 167 ~~~~l~~i~~p~l~i~~~~D~~~p~~-----~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 167 PSPALSNIKVPTLIIWGEDDPLVPPE-----SSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHHHTTTTSEEEEEEETTCSSSHHH-----HHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred ccccccccCCCeEEEEeCCCCCCCHH-----HHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 44456779999999999999999988 6777888899999999999999999999999998875
No 44
>PRK10985 putative hydrolase; Provisional
Probab=98.78 E-value=1.4e-08 Score=67.07 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=55.0
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh-----HHHHHHHHHHHHhh
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP-----ELVHEKMLLWLAET 100 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p-----~~~~~~i~~fl~~~ 100 (103)
....+.++++|+++|+|++|++++.+ ..+.+.+..+++++.+++++||+.+++.. .+..+.+.+|++..
T Consensus 247 ~~~~l~~i~~P~lii~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 247 ALPLLNQIRKPTLIIHAKDDPFMTHE-----VIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred hHHHHhCCCCCEEEEecCCCCCCChh-----hChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 34557889999999999999998877 45556666788999999999999998752 35566788888754
No 45
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.70 E-value=2.3e-08 Score=65.47 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=50.3
Q ss_pred cccCCcc-CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 28 VQLMPSI-SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 28 ~~~~~~i-~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
...+.++ ++|+++|+|++|.+++.+ ..+.+.+.+++.++.+++++||.++. | ...+.|.+|+..
T Consensus 240 ~~~~~~i~~~P~lii~g~~D~~~p~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~i~~~~~~ 304 (306)
T TIGR01249 240 LDNISKIRNIPTYIVHGRYDLCCPLQ-----SAWALHKAFPEAELKVTNNAGHSAFD--P-NNLAALVHALET 304 (306)
T ss_pred HHhhhhccCCCeEEEecCCCCCCCHH-----HHHHHHHhCCCCEEEEECCCCCCCCC--h-HHHHHHHHHHHH
Confidence 3445667 599999999999999987 67888888899999999999999863 2 344666666654
No 46
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.62 E-value=9.4e-08 Score=65.29 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=53.6
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
.++++|+|+|+|++|+++|.+ ..+.+.+..++++++.+|++ ++.+.++++.+.+.+||+..
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~-----~a~~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEE-----DSRLIASSSADGKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHH-----HHHHHHHhCCCCeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 468999999999999999998 67777888899999999986 45589999999999999864
No 47
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.62 E-value=9.2e-08 Score=63.37 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=49.7
Q ss_pred CCccC--ccEEEEecCCCCCCCCCCCccchhhhccc--CCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 31 MPSIS--IPVLVLWGDQDPFTPLDGPVGKYFSSLPS--KLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 31 ~~~i~--~p~lii~g~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+..+. ||+++|+|++|.+-...+ .++.. ....++.+++|++||++..++|+.|++.|..+++..
T Consensus 297 ~~~l~~~~pv~fiyG~~dWmD~~~g------~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 297 LRELKKDVPVTFIYGDRDWMDKNAG------LEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred HHhhccCCCEEEEecCcccccchhH------HHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 44455 999999999998755442 23322 223589999999999999999999999999998753
No 48
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=58.70 Aligned_cols=66 Identities=32% Similarity=0.682 Sum_probs=52.1
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
...+..+.+|+++++|++|...+.. ....+.+.+++ .++.+++++||+++.++|+.+.+.+..|++
T Consensus 214 ~~~~~~~~~P~l~i~g~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 214 RAALARITVPTLIIHGEDDPVVPAE-----LARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred chhhccCCCCeEEEecCCCCcCCHH-----HHHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 3446678899999999999555543 23555566665 899999999999999999999998888543
No 49
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.55 E-value=9e-08 Score=60.62 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=67.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCCC
Q 039699 3 REPANEEGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHCP 81 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~ 81 (103)
.+++...-.+..+++-+.....+.+... ..+.||+.++.|++|..+..+ .+..++++.. ..++..++| |||.
T Consensus 145 ed~El~~l~LPilRAD~~~~e~Y~~~~~-~pl~~pi~~~~G~~D~~vs~~-----~~~~W~~~t~~~f~l~~fdG-gHFf 217 (244)
T COG3208 145 EDPELMALFLPILRADFRALESYRYPPP-APLACPIHAFGGEKDHEVSRD-----ELGAWREHTKGDFTLRVFDG-GHFF 217 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccccCCC-CCcCcceEEeccCcchhccHH-----HHHHHHHhhcCCceEEEecC-ccee
Confidence 3444445555666665544444444443 579999999999999998877 5777777766 589999996 9999
Q ss_pred CCCChHHHHHHHHHHHH
Q 039699 82 HDDRPELVHEKMLLWLA 98 (103)
Q Consensus 82 ~~~~p~~~~~~i~~fl~ 98 (103)
..++.+++...|.+.+.
T Consensus 218 l~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 218 LNQQREEVLARLEQHLA 234 (244)
T ss_pred hhhhHHHHHHHHHHHhh
Confidence 99999999999988885
No 50
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.50 E-value=4.3e-08 Score=63.44 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=49.8
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccc--hhhhcccCC--CCceEEEecCCCCCCCCCCh-HHHHHHHHHHHHh
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGK--YFSSLPSKL--SNVKLIVLEGVGHCPHDDRP-ELVHEKMLLWLAE 99 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~--~~~~~~~~~--~~~~~~~i~~~gH~~~~~~p-~~~~~~i~~fl~~ 99 (103)
..+..+++|+++++|.+|...+... +. ..+.+++.+ ++.++..+++++|++..+.+ +++.+.|.+||++
T Consensus 201 ~~l~~~~~P~ll~~g~~D~~~~~~~--~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 201 AGLERFQGPVLFILSGNDLTAQEFA--DSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHHHhcCCcEEEEEcCcchhHHHHH--HHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 4456789999999999998753210 00 003344434 78999999999999856555 8999999999963
No 51
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.47 E-value=3.7e-07 Score=60.66 Aligned_cols=59 Identities=29% Similarity=0.406 Sum_probs=48.4
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCC--CCceEEEecCCCCCCCCCC-hHHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVGHCPHDDR-PELVHEKMLLWLA 98 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~~~-p~~~~~~i~~fl~ 98 (103)
++|+++++|++|.+++.+ ..+.+.+.. ++.++.++++++|.++.|. ++++.+.|.+|+.
T Consensus 270 ~~P~Lii~G~~D~vv~~~-----~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYE-----GTVSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHH-----HHHHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 699999999999999887 344443332 5789999999999999875 6889999999985
No 52
>PLN02872 triacylglycerol lipase
Probab=98.46 E-value=3.5e-07 Score=62.22 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=53.8
Q ss_pred CCcc--CccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCC---CCCCChHHHHHHHHHHHHhh
Q 039699 31 MPSI--SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHC---PHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 31 ~~~i--~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~---~~~~~p~~~~~~i~~fl~~~ 100 (103)
+..+ ++|+++++|++|.++++. ..+.+.+.+++ .++..++++||. ...+.|+.+.+.|.+|+++.
T Consensus 319 l~~i~~~~Pv~i~~G~~D~lv~~~-----dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 319 LSLIPKSLPLWMGYGGTDGLADVT-----DVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred cccCCCCccEEEEEcCCCCCCCHH-----HHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 4566 589999999999999877 45666667776 688899999994 56699999999999999864
No 53
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.46 E-value=4.4e-07 Score=50.84 Aligned_cols=61 Identities=26% Similarity=0.455 Sum_probs=52.0
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
-..|+|++.++.|+.++.+ .++.+++.+++++++.+++.||-.......-+.+.+.+||..
T Consensus 33 ~~~piL~l~~~~Dp~TP~~-----~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYE-----GARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCCEEEEecCcCCCCcHH-----HHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 3599999999999999999 789999999999999999999988753334567788899874
No 54
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.43 E-value=2.6e-07 Score=69.01 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceE-EEecCCCCCCCC---CChHHHHHHHHHHHHhhc
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKL-IVLEGVGHCPHD---DRPELVHEKMLLWLAETF 101 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~gH~~~~---~~p~~~~~~i~~fl~~~~ 101 (103)
.+.+|++|+++|+|++|.+++++ ..+.+.+.+++.++ .+++++||+.++ ..++.+...|.+||+..+
T Consensus 292 ~L~~i~~P~L~i~G~~D~ivp~~-----~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~ 362 (994)
T PRK07868 292 TLADITCPVLAFVGEVDDIGQPA-----SVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLE 362 (994)
T ss_pred chhhCCCCEEEEEeCCCCCCCHH-----HHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhc
Confidence 47899999999999999999988 67788888899887 678999999777 345677899999998654
No 55
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.42 E-value=2.5e-07 Score=57.59 Aligned_cols=67 Identities=24% Similarity=0.430 Sum_probs=50.0
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHHHhhc
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAETF 101 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 101 (103)
+..|+|+++|++|..++...+ .+..+.+.+.....++.++|++||.+.. ++...+.+.+.+|+++..
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s-~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQS-LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHH-HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEccCCCCccCHHHH-HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 889999999999999988743 2234455554456899999999995553 555677888999998753
No 56
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.39 E-value=2.5e-07 Score=64.96 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=48.6
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChH
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPE 87 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~ 87 (103)
....+..|++|+++++|.+|.+++.+ ..+.+.+.+++.+..+++++||.+++++|.
T Consensus 407 ~~~dL~~I~vPvLvV~G~~D~IvP~~-----sa~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 407 VRLDLSKVKVPVYIIATREDHIAPWQ-----SAYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred EecchhhCCCCEEEEeeCCCCcCCHH-----HHHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 44567889999999999999999887 567777788888889999999999999885
No 57
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=56.99 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=53.9
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhccc-CCCCceEEEecCCCCCCCCC----ChH-HHHHHHHHHHHhh
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPS-KLSNVKLIVLEGVGHCPHDD----RPE-LVHEKMLLWLAET 100 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~gH~~~~~----~p~-~~~~~i~~fl~~~ 100 (103)
..+.+++|.+|++||++.+|++++.+ ....... ..|++.+...+.+||.-.+. +|. +..+++.+|++..
T Consensus 266 s~~~L~~Ir~PtLii~A~DDP~~~~~-----~iP~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 266 SLPLLPKIRKPTLIINAKDDPFMPPE-----VIPKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred ccccccccccceEEEecCCCCCCChh-----hCCcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 44567899999999999999999986 3444444 66889999999999976665 454 5567788998764
No 58
>PRK10566 esterase; Provisional
Probab=98.26 E-value=1.4e-06 Score=55.19 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=45.6
Q ss_pred ccCCcc-CccEEEEecCCCCCCCCCCCccchhhhcccCCC------CceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 29 QLMPSI-SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS------NVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 29 ~~~~~i-~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
..+.++ ++|+++++|++|..++.+ ..+.+.+.++ +.++..++++||.+. + ...+.+.+||++.
T Consensus 179 ~~~~~i~~~P~Lii~G~~D~~v~~~-----~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~~ 248 (249)
T PRK10566 179 HQLEQLADRPLLLWHGLADDVVPAA-----ESLRLQQALRERGLDKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQH 248 (249)
T ss_pred hhhhhcCCCCEEEEEcCCCCcCCHH-----HHHHHHHHHHhcCCCcceEEEecCCCCCccC---H-HHHHHHHHHHHhh
Confidence 334565 699999999999999987 3444444332 357778999999853 4 4568888998763
No 59
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.25 E-value=2.8e-06 Score=53.25 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=50.7
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
...+++|+|-|.|+.|.+++.. ..+.+++.+++..+..-|+ ||+++-.. ...+.|.+|++.
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~-----~s~~L~~~~~~a~vl~Hpg-gH~VP~~~--~~~~~i~~fi~~ 219 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSE-----RSEQLAESFKDATVLEHPG-GHIVPNKA--KYKEKIADFIQS 219 (230)
T ss_pred ccCCCCCeeEEecccceeecch-----HHHHHHHhcCCCeEEecCC-CccCCCch--HHHHHHHHHHHH
Confidence 3578999999999999999988 6789999999998888885 99999766 555666666664
No 60
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.19 E-value=1.5e-06 Score=57.96 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=49.4
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEecCCCCCCCCCCh---HHHHHHHHHHHHh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVGHCPHDDRP---ELVHEKMLLWLAE 99 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~~ 99 (103)
+.++++|+++++|++|.++++. ..+.+.+.+++ .++.+++ +||...+.++ +++.+.|.+|+..
T Consensus 282 l~~i~~Pvliv~G~~D~i~~~~-----~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 282 LKNIKMPILNIYAERDHLVPPD-----ASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred HHhCCCCeEEEecCCCCcCCHH-----HHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 5678999999999999999987 45666666653 5667777 6998776554 7888899999875
No 61
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.16 E-value=5.3e-06 Score=53.11 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=52.9
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
-+.+..++||+++++|.+|++++.. +...+-+..++ .+..++.|+||.-..-.| ++...+..|+...
T Consensus 185 i~kI~~i~~PVLiiHgtdDevv~~s-----Hg~~Lye~~k~~~epl~v~g~gH~~~~~~~-~yi~~l~~f~~~~ 252 (258)
T KOG1552|consen 185 IEKISKITCPVLIIHGTDDEVVDFS-----HGKALYERCKEKVEPLWVKGAGHNDIELYP-EYIEHLRRFISSV 252 (258)
T ss_pred cCcceeccCCEEEEecccCceeccc-----ccHHHHHhccccCCCcEEecCCCcccccCH-HHHHHHHHHHHHh
Confidence 3456788999999999999999998 66677666665 588889999998765554 6678888888754
No 62
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.11 E-value=1.9e-06 Score=54.10 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=54.5
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC--CceEEEecCCCCCCCC-CChHHHHHHHHHHHHh
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAE 99 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~ 99 (103)
..+.+..|..|++|+.|.+|+.++.+ .+..+-+.+. +-++.+++++||-+.. ++.+.+.+.+..||+.
T Consensus 173 ~~~~~~~I~~pt~vvq~~~D~mv~~~-----sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 173 ARRSLDKIYSPTLVVQGRQDEMVPAE-----SANFIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred HHhhhhhcccchhheecccCCCCCHH-----HHHHHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 44567789999999999999999988 4555554443 4689999999997665 6668999999999973
No 63
>PRK13604 luxD acyl transferase; Provisional
Probab=98.07 E-value=9.1e-06 Score=53.60 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=43.8
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC--CceEEEecCCCCCCCCCChHHH
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVGHCPHDDRPELV 89 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~~~p~~~ 89 (103)
+.+.++++|+++|+|.+|..++.+ .++.+.+.++ +.+++++||++|.+. +++..+
T Consensus 196 ~~~~~l~~PvLiIHG~~D~lVp~~-----~s~~l~e~~~s~~kkl~~i~Ga~H~l~-~~~~~~ 252 (307)
T PRK13604 196 NKMKGLDIPFIAFTANNDSWVKQS-----EVIDLLDSIRSEQCKLYSLIGSSHDLG-ENLVVL 252 (307)
T ss_pred HHHhhcCCCEEEEEcCCCCccCHH-----HHHHHHHHhccCCcEEEEeCCCccccC-cchHHH
Confidence 446678899999999999999998 5666655554 689999999999877 666433
No 64
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.06 E-value=9.6e-06 Score=58.13 Aligned_cols=70 Identities=23% Similarity=0.432 Sum_probs=53.2
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHHHhhc
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAETF 101 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 101 (103)
..++++|+|+|||..|..++.+.++ +..+.++......+++++|+.||.+.. ++-..+...+.+|+++..
T Consensus 547 ~~~i~~P~LliHG~~D~~v~~~q~~-~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 547 ADNIKTPLLLIHGEEDDRVPIEQAE-QLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred hcccCCCEEEEeecCCccCChHHHH-HHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 4678999999999999999988532 223445544456899999999997766 555667788888888754
No 65
>PRK11071 esterase YqiA; Provisional
Probab=98.04 E-value=7.2e-06 Score=50.57 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=44.6
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
.++|+++++|.+|++++.+ .+.++.+ +.+...++|++|.. ++.+...+.+.+|++
T Consensus 135 ~~~~v~iihg~~De~V~~~-----~a~~~~~---~~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYR-----QAVAYYA---ACRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHH-----HHHHHHH---hcceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 7788999999999999998 5556554 45677889999976 555888899999875
No 66
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.03 E-value=1.7e-05 Score=52.18 Aligned_cols=68 Identities=29% Similarity=0.506 Sum_probs=50.4
Q ss_pred ccCCccCccEEEEecCCCCCCC-CCCCccchhhhcc--cCCCCceEEEecCCCCCCCCCCh---HHHHHHHHHHHHhhc
Q 039699 29 QLMPSISIPVLVLWGDQDPFTP-LDGPVGKYFSSLP--SKLSNVKLIVLEGVGHCPHDDRP---ELVHEKMLLWLAETF 101 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~-~~~~~~~~~~~~~--~~~~~~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~~~~ 101 (103)
.....+.+|+++++|++|.++. .+. ..++. ...++.++.+++|+.|.++.|.. +++.+.+..|+.+..
T Consensus 222 ~~~~~~~~PvLll~g~~D~vv~~~~~-----~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 222 RDAPAIALPVLLLQGGDDRVVDNVEG-----LARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred hccccccCCEEEEecCCCccccCcHH-----HHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 3346789999999999999988 452 23332 22356899999999998777544 567788888887654
No 67
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.99 E-value=5.7e-06 Score=54.12 Aligned_cols=70 Identities=26% Similarity=0.417 Sum_probs=53.8
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC--CCceEEEecCCCCCCCC----CChHHHHHHHHHHHHh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVGHCPHD----DRPELVHEKMLLWLAE 99 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~----~~p~~~~~~i~~fl~~ 99 (103)
+..+.+..+++|.+|++|++|.++.+.. ++.+-+.. .+-++.++||.-|-++. ++-+.+...|.+||+.
T Consensus 237 ~le~~l~~vtvPflilHG~dD~VTDp~~-----Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 237 DLEKNLNEVTVPFLILHGTDDKVTDPKV-----SKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDE 311 (313)
T ss_pred HHHHhcccccccEEEEecCCCcccCcHH-----HHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHh
Confidence 4566778999999999999999999883 44444333 36799999999998774 4445667778888875
Q ss_pred h
Q 039699 100 T 100 (103)
Q Consensus 100 ~ 100 (103)
.
T Consensus 312 r 312 (313)
T KOG1455|consen 312 R 312 (313)
T ss_pred c
Confidence 3
No 68
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.98 E-value=1.9e-06 Score=54.06 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=29.7
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCC-C-CceEEEecCCCCCC
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-S-NVKLIVLEGVGHCP 81 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~gH~~ 81 (103)
++++++|+|+|.|.+|...+......+..+++++.. + +.++..+|++||++
T Consensus 111 vE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 111 VEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S--
T ss_pred HHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCcee
Confidence 567899999999999999887742222234454443 3 36888999999985
No 69
>PRK11460 putative hydrolase; Provisional
Probab=97.91 E-value=9.3e-06 Score=51.51 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=41.2
Q ss_pred ccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 33 SISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 33 ~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
....|+++++|++|++++.+.+ .+..+.+.+.-.+.++..++++||.+..+.-+...+.+..++
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~-~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHA-VAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHH-HHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999998831 112233333323578889999999986444444444444443
No 70
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.77 E-value=3.2e-05 Score=48.70 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=46.9
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
.+||+|-++|..|.++|.+ .+.++++.+|+-.+.+++|+.|..-..+ .++......|.
T Consensus 198 ~~C~VLTvhGs~D~IVPve-----~AkefAk~i~nH~L~iIEgADHnyt~~q-~~l~~lgl~f~ 255 (269)
T KOG4667|consen 198 KQCRVLTVHGSEDEIVPVE-----DAKEFAKIIPNHKLEIIEGADHNYTGHQ-SQLVSLGLEFI 255 (269)
T ss_pred ccCceEEEeccCCceeech-----hHHHHHHhccCCceEEecCCCcCccchh-hhHhhhcceeE
Confidence 4699999999999999999 6789999999999999999999866544 34444444444
No 71
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=97.77 E-value=7.2e-06 Score=47.59 Aligned_cols=48 Identities=31% Similarity=0.598 Sum_probs=36.1
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCC
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHC 80 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~ 80 (103)
...+...+.|+++++|++|..++.+ ..+.+.+.++ +.+++++++++|+
T Consensus 97 ~~~~~~~~~pv~~i~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 SEDLAKIRIPVLFIHGENDPLVPPE-----QVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp CHHHTTTTSEEEEEEETT-SSSHHH-----HHHHHHHHHCSSEEEEEETTS-TT
T ss_pred hhhhhccCCcEEEEEECCCCcCCHH-----HHHHHHHHcCCCcEEEEeCCCcCc
Confidence 3446678899999999999999877 4555544445 6899999999996
No 72
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=97.74 E-value=2.8e-05 Score=48.56 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=39.6
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChH--------HHHHHHHHHHHh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPE--------LVHEKMLLWLAE 99 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~--------~~~~~i~~fl~~ 99 (103)
...+++|+++++|++|+.++.+. +.+..+.+.+.....++.++||++|-++..... .-.+.+.+||++
T Consensus 141 ~~~~~~P~l~~~g~~D~~~~~~~-~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~ 216 (218)
T PF01738_consen 141 APKIKAPVLILFGENDPFFPPEE-VEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKR 216 (218)
T ss_dssp GGG--S-EEEEEETT-TTS-HHH-HHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC
T ss_pred hcccCCCEeecCccCCCCCChHH-HHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 56789999999999999988772 112233444444678999999999976653322 223456666654
No 73
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.64 E-value=3.3e-05 Score=50.79 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=14.3
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCc----eEEEecCCCCCCCCCChH----HHHHHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV----KLIVLEGVGHCPHDDRPE----LVHEKMLLWL 97 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~gH~~~~~~p~----~~~~~i~~fl 97 (103)
.+...++.+.+|+|++.+.+|+.+|..-...+..+++++..+.. .--+|||+.|.+--+..+ .+.+.+..||
T Consensus 223 ~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 223 RLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp HHHHTGGG--S-EEEEEE--TT----------------------------------------------------------
T ss_pred HHHHHhccCCCceEEEecCCCceecccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 45566788999999999999999988743334455665544321 234899999987754432 4677777776
Q ss_pred H
Q 039699 98 A 98 (103)
Q Consensus 98 ~ 98 (103)
+
T Consensus 303 ~ 303 (303)
T PF08538_consen 303 K 303 (303)
T ss_dssp -
T ss_pred C
Confidence 4
No 74
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.57 E-value=9e-05 Score=48.36 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=48.2
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+.........||++++.|+..+..... .+-..+.-| ..++..++++|=.+..|+|..+++.+.-|+++.
T Consensus 210 DL~~~~~~~~c~vLlvvG~~Sp~~~~v------v~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 210 DLSIERPSLGCPVLLVVGDNSPHVDDV------VEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp ---SECTTCCS-EEEEEETTSTTHHHH------HHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHT
T ss_pred cchhhcCCCCCCeEEEEecCCcchhhH------HHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHccC
Confidence 444445677799999999999875543 233333334 478999999999999999999999999999874
No 75
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.56 E-value=0.00016 Score=44.72 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=48.2
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
.+...++|.++|+|+.|.++... ..-++.+. ...+.+.++++.||++-+- ..+.+.|.+|+.
T Consensus 144 ~l~P~P~~~lvi~g~~Ddvv~l~-----~~l~~~~~-~~~~~i~i~~a~HFF~gKl-~~l~~~i~~~l~ 205 (210)
T COG2945 144 FLAPCPSPGLVIQGDADDVVDLV-----AVLKWQES-IKITVITIPGADHFFHGKL-IELRDTIADFLE 205 (210)
T ss_pred hccCCCCCceeEecChhhhhcHH-----HHHHhhcC-CCCceEEecCCCceecccH-HHHHHHHHHHhh
Confidence 35567899999999999988876 33344443 4578999999999998655 588899999985
No 76
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.53 E-value=5.7e-05 Score=47.26 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=39.8
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
..|+++++|.+|+++|.+.. ++..+.+++...+.++..+++.||.+. .+..+.+.+||++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~-~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWA-EKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHH-HHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHH-HHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhh
Confidence 67999999999999987631 223445555555789999999999865 3445668888875
No 77
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=97.45 E-value=0.00064 Score=46.50 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=51.7
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCC----hHHHHHH-HHHHHHh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDR----PELVHEK-MLLWLAE 99 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~----p~~~~~~-i~~fl~~ 99 (103)
.....+..|.+|++.|.+.+|++++.... =.......|+.-+++-..+||.-.++. +..+.+. +.+|+..
T Consensus 313 Ss~~~v~~I~VP~L~ina~DDPv~p~~~i----p~~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 313 SSSNYVDKIKVPLLCINAADDPVVPEEAI----PIDDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred chhhhcccccccEEEEecCCCCCCCcccC----CHHHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 44566789999999999999999998631 122334458888999999999877766 3445554 7777765
No 78
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.45 E-value=0.0012 Score=43.38 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=49.1
Q ss_pred ccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 33 SISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 33 ~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.++||++++.|+..+..... .+--.+.-| +.++..+.++|=.+..++|..+.+.+.=|+++
T Consensus 244 tlkc~vllvvGd~Sp~~~~v------v~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 244 TLKCPVLLVVGDNSPHVSAV------VECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cccccEEEEecCCCchhhhh------hhhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHcc
Confidence 67799999999999876543 223333333 57899999999999999999999999999986
No 79
>PLN02442 S-formylglutathione hydrolase
Probab=97.44 E-value=0.00016 Score=47.13 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=36.4
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCC
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPH 82 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 82 (103)
....+|+++++|++|++++.....+...+.+++...+.++.++|+.+|..+
T Consensus 214 ~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 214 NDVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred cccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 456899999999999988753111223455555545689999999999755
No 80
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=97.43 E-value=0.00018 Score=45.58 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=54.3
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
.+.+++...|.+++.|..|+++|+. .++.+-+.+|. -++.++|++.|.=.+-+ +..-++|.+|+...
T Consensus 214 ~~ki~~~~~P~LFiSGlkDelVPP~-----~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i~-dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 214 YRKIGQCRMPFLFISGLKDELVPPV-----MMRQLYELCPSRTKRLAEFPDGTHNDTWIC-DGYFQAIEDFLAEV 282 (300)
T ss_pred hhhhccccCceEEeecCccccCCcH-----HHHHHHHhCchhhhhheeCCCCccCceEEe-ccHHHHHHHHHHHh
Confidence 3445677899999999999999999 78888888774 57999999999866554 46678899998753
No 81
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.21 E-value=0.00067 Score=47.32 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=47.4
Q ss_pred CccEEEEecCCCCCCCCCCCccchhh--------------------------hcccCCC-----CceEEEecCCCCCCCC
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFS--------------------------SLPSKLS-----NVKLIVLEGVGHCPHD 83 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~--------------------------~~~~~~~-----~~~~~~i~~~gH~~~~ 83 (103)
..+|+|..|+.|.+++..+. .++++ -+.+... +.+++.+.++||+++.
T Consensus 364 gikVLiYnGd~D~icn~~Gt-~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~ 442 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGN-KAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPM 442 (462)
T ss_pred CceEEEEECCcCeecCcHhH-HHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChh
Confidence 47999999999988776531 00000 0111123 5678889999999999
Q ss_pred CChHHHHHHHHHHHHhh
Q 039699 84 DRPELVHEKMLLWLAET 100 (103)
Q Consensus 84 ~~p~~~~~~i~~fl~~~ 100 (103)
++|+...+.|..|+...
T Consensus 443 d~P~~~~~~i~~fl~~~ 459 (462)
T PTZ00472 443 DQPAVALTMINRFLRNR 459 (462)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 99999999999999753
No 82
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.20 E-value=7.3e-05 Score=46.86 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=31.8
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCCh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p 86 (103)
-..|++|++.|+|.+|.+++.+ ..+.+.+.+.+ .+++..++ ||.++...+
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~-----~s~~L~~~~~~~~~v~~h~g-GH~vP~~~~ 207 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPE-----RSEALAEMFDPDARVIEHDG-GHHVPRKKE 207 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HH-----HHHHHHHHHHHHEEEEEESS-SSS----HH
T ss_pred cccCCCCeEEEEeCCCCCcchH-----HHHHHHHhccCCcEEEEECC-CCcCcCChh
Confidence 3568999999999999999866 45677777666 78888885 999887653
No 83
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.18 E-value=0.0014 Score=41.97 Aligned_cols=69 Identities=28% Similarity=0.367 Sum_probs=47.8
Q ss_pred ccccCCccC-ccEEEEecCCCCCCCCCCCccchhhhcccCCC--CceEEEecCCCCCCCCCChH---HHHHHHHHHHHhh
Q 039699 27 LVQLMPSIS-IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVGHCPHDDRPE---LVHEKMLLWLAET 100 (103)
Q Consensus 27 ~~~~~~~i~-~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~~~p~---~~~~~i~~fl~~~ 100 (103)
....+..+. .|+++++|.+|..++.. ..+.+..... .....++++++|......+. +....+.+|+.+.
T Consensus 223 ~~~~~~~i~~~P~l~~~G~~D~~vp~~-----~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 223 PFDDAEKISPRPVLLVHGERDEVVPLR-----DAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred chhhHhhcCCcceEEEecCCCcccchh-----hhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 334445555 79999999999999987 3344433333 35778888899987764443 5677788888764
No 84
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.13 E-value=0.00053 Score=43.60 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=50.8
Q ss_pred ccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHH
Q 039699 33 SISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWL 97 (103)
Q Consensus 33 ~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl 97 (103)
...+|-+++++..|.+++.+. +.+.++..++..-+++...++++.|-.|+ .+|++..+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~-ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRD-VEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHH-HHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 456899999999999998874 34455555554345788889999998777 89999999999885
No 85
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00076 Score=45.49 Aligned_cols=68 Identities=25% Similarity=0.211 Sum_probs=54.6
Q ss_pred ccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCce-EE-EecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 27 LVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVK-LI-VLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 27 ~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
+...++++++|++++.-..|...|++ ..+.+++.++... +. +-...||-.++...+.+...|..||+.
T Consensus 298 l~~al~~i~~~~lv~gi~sD~lfp~~-----~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 298 LTAALARIKAPVLVVGITSDWLFPPE-----LQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred HHHHHhcCccCEEEEEecccccCCHH-----HHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 34448899999999999999999998 5677777777654 53 445569998888888999999999974
No 86
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.07 E-value=0.0015 Score=44.31 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=48.7
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
...++.+|.+||.|..|++..++. ...+-..+|+ -.+.++|+++|..-. ..+.+.+..|+..
T Consensus 257 Y~~rL~~PK~ii~atgDeFf~pD~-----~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 257 YRDRLTMPKYIINATGDEFFVPDS-----SNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNR 319 (367)
T ss_pred HHHhcCccEEEEecCCCceeccCc-----hHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHH
Confidence 346789999999999999887773 4566666675 678999999998765 5666778888875
No 87
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.04 E-value=0.00052 Score=46.64 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=42.1
Q ss_pred CccEEEEecCCCCCCCCCCC-----------cc----------chhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGP-----------VG----------KYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKM 93 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~-----------~~----------~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i 93 (103)
..+|+|..|+.|.+++.-+. .+ ....-+.+...+.++..+.++||+++.++|+...+.+
T Consensus 330 ~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~ 409 (415)
T PF00450_consen 330 GIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMF 409 (415)
T ss_dssp T-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH
T ss_pred cceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHH
Confidence 38999999999998884320 00 0111111223456789999999999999999999999
Q ss_pred HHHHH
Q 039699 94 LLWLA 98 (103)
Q Consensus 94 ~~fl~ 98 (103)
..|++
T Consensus 410 ~~fl~ 414 (415)
T PF00450_consen 410 RRFLK 414 (415)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99986
No 88
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=96.89 E-value=0.00042 Score=42.22 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=38.5
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHH
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELV 89 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~ 89 (103)
..++.|.+++.+++|+.++.+ ..+++++.+ +++++.++++||+.-.+.-..+
T Consensus 111 ~~l~~~~~viaS~nDp~vp~~-----~a~~~A~~l-~a~~~~~~~~GHf~~~~G~~~~ 162 (171)
T PF06821_consen 111 DPLPFPSIVIASDNDPYVPFE-----RAQRLAQRL-GAELIILGGGGHFNAASGFGPW 162 (171)
T ss_dssp CHHHCCEEEEEETTBSSS-HH-----HHHHHHHHH-T-EEEEETS-TTSSGGGTHSS-
T ss_pred cccCCCeEEEEcCCCCccCHH-----HHHHHHHHc-CCCeEECCCCCCcccccCCCch
Confidence 346788999999999999988 677887765 7899999999999765443333
No 89
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.88 E-value=0.0026 Score=41.78 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=46.1
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
=.+++|.++|....|..-..- ..-++ -...++++++.+||+++.+.|..++..+..|+.+.
T Consensus 267 l~~p~~klLilAg~d~LDkdL-----tiGQM---QGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn 327 (343)
T KOG2564|consen 267 LGLPVPKLLILAGVDRLDKDL-----TIGQM---QGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRN 327 (343)
T ss_pred hCCCccceeEEecccccCcce-----eeeee---ccceeeeeecccCceeccCCcchHHHHHHHHHhhh
Confidence 357899999888888753322 11111 13468999999999999999999999999999763
No 90
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=96.87 E-value=0.0017 Score=41.17 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=46.0
Q ss_pred cccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEecCCCCCCC-----CCChH------HHHHHHH
Q 039699 28 VQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVGHCPH-----DDRPE------LVHEKML 94 (103)
Q Consensus 28 ~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~-----~~~p~------~~~~~i~ 94 (103)
.....++.+|++++.|+.|..+|... +.++-+.+. ..+. .++.++++-+|-.+ ...|+ +-.+.+.
T Consensus 157 ~~D~~~vk~Pilfl~ae~D~~~p~~~-v~~~ee~lk-~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~ 234 (242)
T KOG3043|consen 157 SADIANVKAPILFLFAELDEDVPPKD-VKAWEEKLK-ENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFI 234 (242)
T ss_pred hhHHhcCCCCEEEEeecccccCCHHH-HHHHHHHHh-cCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHH
Confidence 34467889999999999999998884 122222222 2232 47999999999655 34453 3334566
Q ss_pred HHHHhh
Q 039699 95 LWLAET 100 (103)
Q Consensus 95 ~fl~~~ 100 (103)
.|++.+
T Consensus 235 ~Wf~~y 240 (242)
T KOG3043|consen 235 SWFKHY 240 (242)
T ss_pred HHHHHh
Confidence 666654
No 91
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.71 E-value=0.0086 Score=38.30 Aligned_cols=70 Identities=26% Similarity=0.462 Sum_probs=46.5
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCC--------h---HHHHHHHHHHHHh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDR--------P---ELVHEKMLLWLAE 99 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~--------p---~~~~~~i~~fl~~ 99 (103)
..++++|++++.|+.|..++.... +...+.+.+.....++.+++++.|-++-.. + +.-.+.+.+|+++
T Consensus 154 ~~~~~~pvl~~~~~~D~~~p~~~~-~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~ 232 (236)
T COG0412 154 APKIKVPVLLHLAGEDPYIPAADV-DALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKR 232 (236)
T ss_pred cccccCcEEEEecccCCCCChhHH-HHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 358999999999999999988731 112223333223578999999889766432 2 2334667778876
Q ss_pred hc
Q 039699 100 TF 101 (103)
Q Consensus 100 ~~ 101 (103)
..
T Consensus 233 ~~ 234 (236)
T COG0412 233 LL 234 (236)
T ss_pred hc
Confidence 53
No 92
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.61 E-value=0.005 Score=41.12 Aligned_cols=62 Identities=27% Similarity=0.308 Sum_probs=38.9
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCCCCCCChHHH-HHHHHHHHHh
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHCPHDDRPELV-HEKMLLWLAE 99 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~~~p~~~-~~~i~~fl~~ 99 (103)
..-.+|+||+++-.|-.|+++|+.. .-..-+.++ ..++.++|..||... ..+ .+....||++
T Consensus 256 nfA~ri~~pvl~~~gl~D~~cPP~t-----~fA~yN~i~~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~ 319 (320)
T PF05448_consen 256 NFARRIKCPVLFSVGLQDPVCPPST-----QFAAYNAIPGPKELVVYPEYGHEYG----PEFQEDKQLNFLKE 319 (320)
T ss_dssp HHGGG--SEEEEEEETT-SSS-HHH-----HHHHHCC--SSEEEEEETT--SSTT----HHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEecCCCCCCchh-----HHHHHhccCCCeeEEeccCcCCCch----hhHHHHHHHHHHhc
Confidence 3346789999999999999999983 333344444 478999999999643 334 6677777765
No 93
>COG0400 Predicted esterase [General function prediction only]
Probab=96.56 E-value=0.0022 Score=40.27 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=40.2
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
-..|+++++|..|++++.... .+..+.+.+...+++...++ .||.+..+. .+.+.+|+..
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~-~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~----~~~~~~wl~~ 204 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALA-EALAEYLTASGADVEVRWHE-GGHEIPPEE----LEAARSWLAN 204 (207)
T ss_pred CCCeEEEeccCcCCccCHHHH-HHHHHHHHHcCCCEEEEEec-CCCcCCHHH----HHHHHHHHHh
Confidence 358999999999999998831 11233344444467888898 699876543 3455556654
No 94
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.52 E-value=0.0068 Score=36.92 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=45.6
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC----------CChHHHHHHHHHHHH
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD----------DRPELVHEKMLLWLA 98 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~----------~~p~~~~~~i~~fl~ 98 (103)
+.+..+..|++|++|..|++-..+ ....+. .-+..+++++.++.|-+-- ++-...++.|..|..
T Consensus 136 ~HL~gl~tPtli~qGtrD~fGtr~-----~Va~y~-ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~ 209 (213)
T COG3571 136 EHLTGLKTPTLITQGTRDEFGTRD-----EVAGYA-LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWAR 209 (213)
T ss_pred hhccCCCCCeEEeecccccccCHH-----HHHhhh-cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 457789999999999999997766 232222 2256899999999995321 122345666777776
Q ss_pred hhc
Q 039699 99 ETF 101 (103)
Q Consensus 99 ~~~ 101 (103)
++.
T Consensus 210 ~l~ 212 (213)
T COG3571 210 RLA 212 (213)
T ss_pred hcC
Confidence 543
No 95
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=96.50 E-value=0.0018 Score=44.48 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=47.5
Q ss_pred CCccC-ccEEEEecCCCCCCCCCCCccchhhhcccC---CCC--ceEEEecCCCCCCCCCCh---HHHHHHHHHHHHh
Q 039699 31 MPSIS-IPVLVLWGDQDPFTPLDGPVGKYFSSLPSK---LSN--VKLIVLEGVGHCPHDDRP---ELVHEKMLLWLAE 99 (103)
Q Consensus 31 ~~~i~-~p~lii~g~~D~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~~ 99 (103)
+++|+ +|++.+.|++|.++++.+ .+.+.+. ++. .+....+++||+-....+ +++...|.+|+..
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~q-----t~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQ-----TKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHH-----hHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 56799 999999999999999983 4444444 342 356777789998666443 5667889999875
No 96
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.47 E-value=0.005 Score=41.47 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=46.9
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCC-CCCCChHHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHC-PHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~-~~~~~p~~~~~~i~~fl~ 98 (103)
+-.+.++.+++|..+|.. ....+.+..|++++.++++ ||. ..+-+.+.|.+.|.+-++
T Consensus 289 p~~ii~V~A~~DaYVPr~-----~v~~Lq~~WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 289 PSAIIFVAAKNDAYVPRH-----GVLSLQEIWPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CCcEEEEEecCceEechh-----hcchHHHhCCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 345788889999999987 4568888899999999997 995 444667899999987664
No 97
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.35 E-value=0.012 Score=39.22 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=44.7
Q ss_pred CccEEEEecCCCCCCCCCCCccchh--------------------hhcccCCC-CceEEEecCCCCCCCCCChHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYF--------------------SSLPSKLS-NVKLIVLEGVGHCPHDDRPELVHEKM 93 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~~~i~~~gH~~~~~~p~~~~~~i 93 (103)
..++||..|+.|.+++.-+. .++. .-+.+... +.++..+-++||+++ .+|+...+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~-~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~ 310 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLAT-QAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMF 310 (319)
T ss_pred CceEEEEECCcCeeCCcHhH-HHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHH
Confidence 37999999999977766421 0000 11111223 378888999999997 5999999999
Q ss_pred HHHHHhh
Q 039699 94 LLWLAET 100 (103)
Q Consensus 94 ~~fl~~~ 100 (103)
..|+...
T Consensus 311 ~~fi~~~ 317 (319)
T PLN02213 311 QRWISGQ 317 (319)
T ss_pred HHHHcCC
Confidence 9999753
No 98
>PRK10162 acetyl esterase; Provisional
Probab=96.33 E-value=0.01 Score=39.37 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=43.4
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCC-----ChHHHHHHHHHHHHhh
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDD-----RPELVHEKMLLWLAET 100 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~-----~p~~~~~~i~~fl~~~ 100 (103)
.|++|++|+.|++.+.. ....+.+.+..-..++..+++..|-+... ......+.+..|+++.
T Consensus 249 Pp~~i~~g~~D~L~de~---~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~ 315 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDS---RLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQ 315 (318)
T ss_pred CCeEEEecCCCcCcChH---HHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHH
Confidence 59999999999986533 33556666554468999999999954322 2345566777888764
No 99
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=96.28 E-value=0.012 Score=43.72 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=46.1
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHHHh
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAE 99 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~ 99 (103)
+....+.++++|+++++|-.|..++...+ .+..+.+.+.-...++++.+ ++|..+. ..+..+.+.+.+|+..
T Consensus 446 n~~~~~~kIkvPvLlIhGw~D~~V~~~~s-~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~ 518 (767)
T PRK05371 446 NYLKDADKIKASVLVVHGLNDWNVKPKQV-YQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTH 518 (767)
T ss_pred CHhhHhhCCCCCEEEEeeCCCCCCChHHH-HHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHh
Confidence 34455678999999999999999886521 11233443322345666666 4885443 4456777778888865
No 100
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.23 E-value=0.015 Score=40.72 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=46.6
Q ss_pred ccEEEEecCCCCCCCCCCC-----------ccchhhhcc---------cCCCCceEEEecCCCCCCCCCChHHHHHHHHH
Q 039699 36 IPVLVLWGDQDPFTPLDGP-----------VGKYFSSLP---------SKLSNVKLIVLEGVGHCPHDDRPELVHEKMLL 95 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~-----------~~~~~~~~~---------~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~ 95 (103)
.+++|..|+.|.+++.-.. ..++...+. +...+..+..+.|+||+++.++|+.....+.+
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 7999999999998887631 000101111 11223566889999999999999999999999
Q ss_pred HHHhh
Q 039699 96 WLAET 100 (103)
Q Consensus 96 fl~~~ 100 (103)
|+...
T Consensus 444 fl~g~ 448 (454)
T KOG1282|consen 444 FLNGQ 448 (454)
T ss_pred HHcCC
Confidence 99863
No 101
>PLN02209 serine carboxypeptidase
Probab=96.03 E-value=0.018 Score=40.10 Aligned_cols=65 Identities=20% Similarity=0.357 Sum_probs=46.0
Q ss_pred CccEEEEecCCCCCCCCCCC-------------------ccchhhhcccCCCC-ceEEEecCCCCCCCCCChHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGP-------------------VGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPELVHEKML 94 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~-------------------~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~~~~~~i~ 94 (103)
..+++|..|+.|.+++.-+. +.....-+.+...+ .++..+-++||+++ .+|++..+.+.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 37999999999998887531 00001111122343 78888999999996 69999999999
Q ss_pred HHHHhh
Q 039699 95 LWLAET 100 (103)
Q Consensus 95 ~fl~~~ 100 (103)
+|+...
T Consensus 430 ~fi~~~ 435 (437)
T PLN02209 430 RWISGQ 435 (437)
T ss_pred HHHcCC
Confidence 999753
No 102
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.00 E-value=0.0086 Score=40.90 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhcCCCCCCccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCChH
Q 039699 9 EGALDAFVSIVTGPPGPNLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPE 87 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~ 87 (103)
..+.+.|.+++.........+. ..+.+|+-.-.+..+..-..+ ..++...++ .+....+++|||.++|.|+
T Consensus 379 ~ss~r~y~e~~~~~~r~~~~~r-~~v~vPtg~a~f~~el~~~~~-------~~lrdky~nL~~~s~~~~GGhFaalE~p~ 450 (469)
T KOG2565|consen 379 TSSQRFYDESFNQRQRDLALDR-VQVRVPTGCARFKFELWHTSD-------DVLRDKYPNLTHSSYHPKGGHFAALEDPK 450 (469)
T ss_pred hhhHHHHHHHHhHHHHHHHhhc-cccccchhhhccccchhhCcH-------HHHhhhcccceeeEeccCCcchhhhhCcH
Confidence 3455566655543211112221 356778877777777654333 355666777 4566778889999999999
Q ss_pred HHHHHHHHHHHhh
Q 039699 88 LVHEKMLLWLAET 100 (103)
Q Consensus 88 ~~~~~i~~fl~~~ 100 (103)
.+++.+..|++..
T Consensus 451 ~La~D~~~FV~~~ 463 (469)
T KOG2565|consen 451 KLAQDFFSFVEKL 463 (469)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 103
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.84 E-value=0.027 Score=36.56 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=34.0
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD 83 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~ 83 (103)
...|+++.+|+.|+.++......+..+.+.+.....++..+||.+|....
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~ 259 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYF 259 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchh
Confidence 45799999999999888721111234444444345789999999996553
No 104
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=95.67 E-value=0.028 Score=34.77 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=37.9
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
+.+++++.+..|++++.. +. .+...+....+.+|++|-+. +-+.....|.+|++
T Consensus 134 ~~~~lvll~~~DEvLd~~-------~a-~~~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f~~ 187 (187)
T PF05728_consen 134 PERYLVLLQTGDEVLDYR-------EA-VAKYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAFLQ 187 (187)
T ss_pred CccEEEEEecCCcccCHH-------HH-HHHhcCceEEEEeCCCCCCc--cHHHHHHHHHHhhC
Confidence 578999999999998865 22 23334555667788899644 44577778888863
No 105
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.63 E-value=0.034 Score=38.72 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=45.6
Q ss_pred CccEEEEecCCCCCCCCCCC-----------ccc--------hhhhcccCCC-CceEEEecCCCCCCCCCChHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGP-----------VGK--------YFSSLPSKLS-NVKLIVLEGVGHCPHDDRPELVHEKML 94 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~-----------~~~--------~~~~~~~~~~-~~~~~~i~~~gH~~~~~~p~~~~~~i~ 94 (103)
..+++|..|+.|.+++.-+. ..+ ...-+.+... +.++..+-++||+++ .+|+...+.+.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 37999999999988876631 000 0001111223 377888999999997 69999999999
Q ss_pred HHHHhh
Q 039699 95 LWLAET 100 (103)
Q Consensus 95 ~fl~~~ 100 (103)
.|+...
T Consensus 426 ~Fi~~~ 431 (433)
T PLN03016 426 RWISGQ 431 (433)
T ss_pred HHHcCC
Confidence 999764
No 106
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=95.60 E-value=0.0081 Score=41.46 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCCh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p 86 (103)
+.+|+||++.+.|++|.++|.. -....+..+++ .+++..+ +||....-+|
T Consensus 326 L~~It~pvy~~a~~~DhI~P~~-----Sv~~g~~l~~g~~~f~l~~-sGHIa~vVN~ 376 (445)
T COG3243 326 LGDITCPVYNLAAEEDHIAPWS-----SVYLGARLLGGEVTFVLSR-SGHIAGVVNP 376 (445)
T ss_pred hhhcccceEEEeecccccCCHH-----HHHHHHHhcCCceEEEEec-CceEEEEeCC
Confidence 6789999999999999988887 34555566666 6666665 7998776653
No 107
>PRK10115 protease 2; Provisional
Probab=95.56 E-value=0.035 Score=40.76 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=38.0
Q ss_pred cCCccCcc-EEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEe---cCCCCCCCCCChHH
Q 039699 30 LMPSISIP-VLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVL---EGVGHCPHDDRPEL 88 (103)
Q Consensus 30 ~~~~i~~p-~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~gH~~~~~~p~~ 88 (103)
.+.++..| +|+++|.+|..++...+ .++..++++.-...+.+++ +++||...-.+-+.
T Consensus 600 ~v~~~~~P~lLi~~g~~D~RV~~~~~-~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 600 NVTAQAYPHLLVTTGLHDSQVQYWEP-AKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred ccCccCCCceeEEecCCCCCcCchHH-HHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 34667889 56779999999998853 2334444444344567777 89999844333333
No 108
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.45 E-value=0.018 Score=41.27 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=38.0
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCCCCCCCh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~~~p 86 (103)
+.+|+||++++.|..|.++|.+ ........++ +.+++..+ +||.-=+-+|
T Consensus 437 L~~I~~Pvl~va~~~DHIvPw~-----s~~~~~~l~gs~~~fvl~~-gGHIggivnp 487 (560)
T TIGR01839 437 LKKVKCDSFSVAGTNDHITPWD-----AVYRSALLLGGKRRFVLSN-SGHIQSILNP 487 (560)
T ss_pred hhcCCCCeEEEecCcCCcCCHH-----HHHHHHHHcCCCeEEEecC-CCccccccCC
Confidence 6889999999999999999998 4566666655 46777776 6997544443
No 109
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=94.75 E-value=0.0059 Score=37.69 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=33.0
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCC
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPH 82 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 82 (103)
.|++++.|+.|.+.+.. ....+++++..-.+++.++++.+|.+.
T Consensus 167 Pp~~i~~g~~D~l~~~~---~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDS---LRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HEEEEEEETTSTTHHHH---HHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred CCeeeeccccccchHHH---HHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 48999999999876533 345667766555689999999999654
No 110
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.67 E-value=0.087 Score=38.31 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.7
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-CceEEEecCCCCCCCC
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVGHCPHD 83 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~ 83 (103)
+.+-.++.|+|++.|..|..+.+. .++.+++.+. ..+++++.+++|.+-.
T Consensus 298 E~Lldmk~PVLFV~Gsnd~mcspn-----~ME~vreKMqA~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 298 EALLDMKQPVLFVIGSNDHMCSPN-----SMEEVREKMQAEVELHVIGGADHSMAI 348 (784)
T ss_pred hhhHhcCCceEEEecCCcccCCHH-----HHHHHHHHhhccceEEEecCCCccccC
Confidence 445578999999999999999988 6777766654 4789999999997654
No 111
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=94.62 E-value=0.034 Score=36.63 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=36.6
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCC-CCceEEEecCCCCCCC
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVGHCPH 82 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~ 82 (103)
-.+|++|.+|..|.++|... .++..+++.+.- .++++..+++.+|...
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~-~~~l~~~~c~~G~a~V~~~~~~~~~H~~~ 266 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPAD-TDALVAKWCAAGGADVEYVRYPGGGHLGA 266 (290)
T ss_pred CCCCEEEEecCCCCCCChHH-HHHHHHHHHHcCCCCEEEEecCCCChhhh
Confidence 46999999999999998874 234455565555 4678888999999754
No 112
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=94.49 E-value=0.059 Score=33.85 Aligned_cols=60 Identities=25% Similarity=0.432 Sum_probs=41.7
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
..|++..+|+.|+++|.... .+..+.+.......++..+++.+|. ..|+++ +.+..|+..
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g-~~s~~~l~~~~~~~~f~~y~g~~h~---~~~~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFG-EKSAQFLKSLGVRVTFKPYPGLGHS---TSPQEL-DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHH-HHHHHHHHHcCCceeeeecCCcccc---ccHHHH-HHHHHHHHH
Confidence 56899999999999998832 1123444444445899999999998 445555 455666654
No 113
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=93.99 E-value=0.038 Score=33.92 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=44.3
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCC---hHHHHHHHHHHHHh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDR---PELVHEKMLLWLAE 99 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~---p~~~~~~i~~fl~~ 99 (103)
..+.-|.+++.+.+|+.++.+ .++.+++.. ++.++.+.++||+--.+- ..+....+.+|+.+
T Consensus 114 ~~lpfps~vvaSrnDp~~~~~-----~a~~~a~~w-gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 114 EPLPFPSVVVASRNDPYVSYE-----HAEDLANAW-GSALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred ccCCCceeEEEecCCCCCCHH-----HHHHHHHhc-cHhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 456789999999999999998 778887765 557888888899754322 23444555565544
No 114
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=93.93 E-value=0.2 Score=32.66 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=35.1
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCC--CceEEEecCCCCCCCCCChHHHH
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVGHCPHDDRPELVH 90 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~~~p~~~~ 90 (103)
..+.++.+|++.+.+++|..+... ....+...++ ..+++.++|++|-+- |++....
T Consensus 189 ~~~k~l~iP~iaF~A~~D~WV~q~-----eV~~~~~~~~s~~~klysl~Gs~HdL~-enl~vlr 246 (294)
T PF02273_consen 189 NDMKRLSIPFIAFTANDDDWVKQS-----EVEELLDNINSNKCKLYSLPGSSHDLG-ENLVVLR 246 (294)
T ss_dssp HHHTT--S-EEEEEETT-TTS-HH-----HHHHHHTT-TT--EEEEEETT-SS-TT-SSHHHHH
T ss_pred HHHhhCCCCEEEEEeCCCccccHH-----HHHHHHHhcCCCceeEEEecCccchhh-hChHHHH
Confidence 446788999999999999988776 4555555433 378999999999876 7775443
No 115
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=93.83 E-value=0.42 Score=29.84 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=41.1
Q ss_pred CccccCCccC-ccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 26 NLVQLMPSIS-IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 26 ~~~~~~~~i~-~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
+..+.+.+++ .|++-|+|.++.-.. ...+.. ++++.+.+|| ||++- ++.+.+++.|.+-++.
T Consensus 129 ~~~pei~~l~~~~v~CiyG~~E~d~~--------cp~l~~--~~~~~i~lpG-gHHfd-~dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 129 PVIPEIAKLPPAPVQCIYGEDEDDSL--------CPSLRQ--PGVEVIALPG-GHHFD-GDYDALAKRILDALKA 191 (192)
T ss_pred CchHHHHhCCCCeEEEEEcCCCCCCc--------CccccC--CCcEEEEcCC-CcCCC-CCHHHHHHHHHHHHhc
Confidence 4555666676 599999998766321 122322 6889999997 67644 5567788877766653
No 116
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.23 Score=32.85 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=44.9
Q ss_pred EEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCC-CCChHHHHHHHHHHHHhhc
Q 039699 38 VLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPH-DDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 38 ~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~~~p~~~~~~i~~fl~~~~ 101 (103)
+.++.+.+|..++..+ ...+.+..|++++..++ +||-.. +-.-+.|.++|.+-|++..
T Consensus 309 ~ivv~A~~D~Yipr~g-----v~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTG-----VRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLD 367 (371)
T ss_pred EEEEEecCCccccccC-----cHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhh
Confidence 5667788999888863 56777788999999999 599543 3555799999998887653
No 117
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=93.70 E-value=0.085 Score=35.65 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=44.5
Q ss_pred ccCcc-EEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh-----HHHHHHHHHHHHh
Q 039699 33 SISIP-VLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP-----ELVHEKMLLWLAE 99 (103)
Q Consensus 33 ~i~~p-~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p-----~~~~~~i~~fl~~ 99 (103)
...+| ++|+.++.|.+.... ..+.+++++..-..++.+++++.|-++.-.| ..+.+.+.+|+++
T Consensus 265 ~~~lp~tlv~~ag~D~L~D~~---~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 265 GLGLPPTLVVVAGYDVLRDEG---LAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred ccCCCceEEEEeCchhhhhhh---HHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 34454 999999999877555 3356777665445678889999997665444 3566677778765
No 118
>PLN00021 chlorophyllase
Probab=93.62 E-value=0.41 Score=32.00 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=33.0
Q ss_pred ccCccEEEEecCCCC-----C----CCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh
Q 039699 33 SISIPVLVLWGDQDP-----F----TPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 33 ~i~~p~lii~g~~D~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p 86 (103)
++.+|++++.+..|. . .+.... +.+-+.++-+...+.+++++||+-+++..
T Consensus 187 ~~~~P~liig~g~~~~~~~~~~p~~ap~~~~---~~~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 187 NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVN---HAEFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred cCCCCeEEEecCCCcccccccccccCCCCCC---HHHHHHhcCCCeeeeeecCCCcceeecCC
Confidence 477999999988663 2 223311 23334444456788899999998776554
No 119
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=93.13 E-value=0.17 Score=31.55 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=41.5
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCC-ChHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDD-RPELVHEKMLLWL 97 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~-~p~~~~~~i~~fl 97 (103)
.+|..+....+|+...... .+....+.+..++ .++..++| +|+.++. +..++.+.|.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~--~~~~~~W~~~~~~~~~~~~v~G-~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDR--LEEADRWWDYTSGDVEVHDVPG-DHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHC--GGHHCHHHGCBSSSEEEEEESS-ETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchh--hhhHHHHHHhcCCCcEEEEEcC-CCcEecchHHHHHHHHHhccC
Confidence 5678888888888755441 0112235555554 67888986 9999987 7778888887765
No 120
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=92.85 E-value=0.18 Score=31.54 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=43.5
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEecCCCCCCCCCCh---HHHHHHHHHHHHh
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVGHCPHDDRP---ELVHEKMLLWLAE 99 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~~ 99 (103)
++.+.|=|+.|.++...+ ...+..+...+|. -...+.+++||+-...-+ +++...|.+|+.+
T Consensus 135 taLlTVEGe~DDIsg~GQ--T~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 135 TALLTVEGERDDISGPGQ--THAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred ceeEEeecCcccCCcchH--HHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 677778999999988874 2234455555564 356788999998766555 4566778888764
No 121
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.24 Score=32.41 Aligned_cols=57 Identities=12% Similarity=0.263 Sum_probs=47.6
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
.+-+.+.+|..|..+|.. +++.+++.+|. +++.+ ++.-|.+...+.+..+..+.+.+
T Consensus 242 ~d~l~Fyygt~DgW~p~~-----~~d~~kdd~~eed~~Lde-dki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVPSH-----YYDYYKDDVPEEDLKLDE-DKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred CcEEEEEccCCCCCcchH-----HHHHHhhhcchhceeecc-ccCCcceeecccHHHHHHHHHhh
Confidence 567889999999999988 88999999885 55555 88999988888888888877654
No 122
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=92.32 E-value=0.38 Score=34.52 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=39.9
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC----------ceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN----------VKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
.|++|.||+.++.|..|.++|+.+. ...+.+..++ +-..+.+..||.-..-....-...=.+|+
T Consensus 292 DLr~Ir~Piivfas~gDnITPP~Qa----L~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGIFVS~~VarkEH~~i~ 365 (581)
T PF11339_consen 292 DLRNIRSPIIVFASYGDNITPPQQA----LNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGIFVSGKVARKEHREIA 365 (581)
T ss_pred ehhhCCCCEEEEeccCCCCCChhHh----ccchHhhcCCHHHHHhCCCEEEEEecCCCCceEEEeccHhhHHHHHHHH
Confidence 4788999999999999999999852 1222222221 22345677899765555444444434443
No 123
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.01 E-value=0.61 Score=30.95 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=43.0
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
..++++|+++..|-.|+++++.. .=.+.+.++. -+..+++.=+|. .-|.-..+.+..|++.+
T Consensus 255 A~RiK~pvL~svgL~D~vcpPst-----qFA~yN~l~~~K~i~iy~~~aHe---~~p~~~~~~~~~~l~~l 317 (321)
T COG3458 255 AARIKVPVLMSVGLMDPVCPPST-----QFAAYNALTTSKTIEIYPYFAHE---GGPGFQSRQQVHFLKIL 317 (321)
T ss_pred HHhhccceEEeecccCCCCCChh-----hHHHhhcccCCceEEEeeccccc---cCcchhHHHHHHHHHhh
Confidence 46789999999999999999983 3333444453 466677765665 44545556677787754
No 124
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=91.81 E-value=0.22 Score=34.04 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=44.0
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCc--eEEEecCCCCCCCCCChHHH
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV--KLIVLEGVGHCPHDDRPELV 89 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~gH~~~~~~p~~~ 89 (103)
..+..++.|++++.|..|.+.+... ...+....+++. .+..+|++.|+-..+-.+++
T Consensus 245 tgl~~v~~P~~~~a~s~D~~aP~~~----~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 245 TGLVKVTDPVLLAAGSADGFAPPVT----EQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred ccceeeecceeeecccccccCCccc----ccccccccCCcchhheeecCCCccccccccCccc
Confidence 3456789999999999999877763 345556667776 67889999999888776664
No 125
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=91.40 E-value=0.49 Score=32.75 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=42.7
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCC-ceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
.++..|..|+.|..|.+..++ ....+-+.+|+ ..+.++|+..|... +..+.+.+..|+.
T Consensus 326 ~RLalpKyivnaSgDdff~pD-----sa~lYyd~LPG~kaLrmvPN~~H~~~---n~~i~esl~~fln 385 (507)
T COG4287 326 LRLALPKYIVNASGDDFFVPD-----SANLYYDDLPGEKALRMVPNDPHNLI---NQFIKESLEPFLN 385 (507)
T ss_pred hhccccceeecccCCcccCCC-----ccceeeccCCCceeeeeCCCCcchhh---HHHHHHHHHHHHH
Confidence 568899999999988877777 35677788887 46789999999844 2334444555554
No 126
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=91.30 E-value=0.47 Score=31.27 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=40.9
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCC-hHHH--HHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDR-PELV--HEKMLLWLA 98 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~-p~~~--~~~i~~fl~ 98 (103)
--|++++.|+.|.+.+.. ..+.+++++..-..++..+++..|.+..-. |+.. ...+..|+.
T Consensus 245 lPP~~i~~a~~D~l~~~~---~~~a~~L~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 245 LPPTLIQTAEFDPLRDEG---EAYAERLRAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred CCCEEEEecCCCcchhHH---HHHHHHHHHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 467999999999988843 335667766655679999999999554333 3222 234555554
No 127
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=90.81 E-value=0.14 Score=33.12 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=47.5
Q ss_pred CccccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCc--eEEEecC----CCCCCCCCCh-HHHHHHHHHHH
Q 039699 26 NLVQLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV--KLIVLEG----VGHCPHDDRP-ELVHEKMLLWL 97 (103)
Q Consensus 26 ~~~~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~----~gH~~~~~~p-~~~~~~i~~fl 97 (103)
+..+..+.+..|++.+...+|+.+|+. ..+.+....+++ +...++. .||+--.-+| |.+.+.+.+|+
T Consensus 207 ~~~q~yaaVrtPi~~~~~~DD~w~P~A-----s~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 207 NYRQVYAAVRTPITFSRALDDPWAPPA-----SRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHhcCceeeeccCCCCcCCHH-----HHHHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 345556788999999999999999988 456666655554 3344444 4998777777 66766666654
No 128
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=90.71 E-value=0.086 Score=33.51 Aligned_cols=50 Identities=8% Similarity=0.209 Sum_probs=38.8
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCC
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDR 85 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~ 85 (103)
+..++.|++++.+.++...-.+ .-+.+++....+++..+++.+|+-.+++
T Consensus 203 ~~~v~~~ilVv~~~~espklie-----Qnrdf~~q~~~a~~~~f~n~~hy~I~~~ 252 (270)
T KOG4627|consen 203 YTDVTVWILVVAAEHESPKLIE-----QNRDFADQLRKASFTLFKNYDHYDIIEE 252 (270)
T ss_pred hcCceeeeeEeeecccCcHHHH-----hhhhHHHHhhhcceeecCCcchhhHHHH
Confidence 5678999999999988755444 3456666667789999999999866654
No 129
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=90.40 E-value=0.7 Score=32.75 Aligned_cols=66 Identities=20% Similarity=0.497 Sum_probs=46.8
Q ss_pred ccCccEEEEecCCCCCCCCCCCccchhhhcccCCC-------C-ceEEEecCCCCCCCCC--ChHHHHHHHHHHHHh
Q 039699 33 SISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLS-------N-VKLIVLEGVGHCPHDD--RPELVHEKMLLWLAE 99 (103)
Q Consensus 33 ~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~i~~~gH~~~~~--~p~~~~~~i~~fl~~ 99 (103)
+--.++++.+|..|+.+++..+ .++++++.+..+ + .++..+||.+|..--. .+-.....|.+|+++
T Consensus 351 ~~GGKLI~~HG~aD~~I~p~~t-i~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 351 ARGGKLILYHGWADPLIPPQGT-IDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred hcCCeEEEEecCCCCccCCCcH-HHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 3458999999999999998864 334455544443 2 5899999999975433 344566788888874
No 130
>PRK04940 hypothetical protein; Provisional
Probab=89.81 E-value=0.96 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=36.7
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCCc-eEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNV-KLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
...+++....|++++.. ...+.+.+. +..+.+|+.|-+ ++-+.....|.+|+..
T Consensus 125 ~r~~vllq~gDEvLDyr--------~a~~~y~~~y~~~v~~GGdH~f--~~fe~~l~~I~~F~~~ 179 (180)
T PRK04940 125 DRCLVILSRNDEVLDSQ--------RTAEELHPYYEIVWDEEQTHKF--KNISPHLQRIKAFKTL 179 (180)
T ss_pred ccEEEEEeCCCcccCHH--------HHHHHhccCceEEEECCCCCCC--CCHHHHHHHHHHHHhc
Confidence 34599999999988754 233333454 788888877743 3445677888888853
No 131
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.98 Score=33.91 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=47.5
Q ss_pred ccCCccCccE-EEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh-HHHHHHHHHHHHh
Q 039699 29 QLMPSISIPV-LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP-ELVHEKMLLWLAE 99 (103)
Q Consensus 29 ~~~~~i~~p~-lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p-~~~~~~i~~fl~~ 99 (103)
..+..++.|. ++++|..|..+....+ .+..+.+....-..++.++|+..|.+-.... ..+...+..|+..
T Consensus 675 ~~~~~~~~~~~LliHGt~DdnVh~q~s-~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~ 746 (755)
T KOG2100|consen 675 SPANNIKTPKLLLIHGTEDDNVHFQQS-AILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRD 746 (755)
T ss_pred chhhhhccCCEEEEEcCCcCCcCHHHH-HHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHH
Confidence 3345666676 9999999998876642 2233444333223789999999998877554 4566777777763
No 132
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=88.87 E-value=1 Score=27.12 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=36.9
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCC-CCceEEEecCCCCCCCC-CChHHHHHHHHHH
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVGHCPHD-DRPELVHEKMLLW 96 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~f 96 (103)
..+.+|+.++.+.+|....... ....+.... ...++..+++ +|+.++ +++..+...|..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~----~~~~W~~~~~~~~~~~~~~g-~H~~~~~~~~~~~~~~~~~~ 211 (212)
T smart00824 150 GPVAAPTLLVRASEPLAEWPDE----DPDGWRAHWPLPHTVVDVPG-DHFTMMEEHAAATARAVHDW 211 (212)
T ss_pred CCCCCCEEEEeccCCCCCCCCC----CcccccCCCCCCceeEEccC-chHHHHHHhHHHHHHHHHhh
Confidence 3578999999999886541111 123344443 3578888885 887764 5555555555544
No 133
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=88.45 E-value=1.7 Score=30.51 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=36.7
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCC-----ChHHHHHHHHHHHH
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDD-----RPELVHEKMLLWLA 98 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~-----~p~~~~~~i~~fl~ 98 (103)
.-.+++|+|++|+..... . .+.+.-.++.+.+.||+.|..-+. +.++....|.+|..
T Consensus 351 ~~rmlFVYG~nDPW~A~~------f-~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 351 GPRMLFVYGENDPWSAEP------F-RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CCeEEEEeCCCCCcccCc------c-ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 457899999999975443 1 222223478899999999975442 22344455666653
No 134
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=88.30 E-value=1.8 Score=30.96 Aligned_cols=63 Identities=27% Similarity=0.226 Sum_probs=36.3
Q ss_pred ccEEEEecCCCCCCCCCCC--ccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 36 IPVLVLWGDQDPFTPLDGP--VGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.+++...|=.|..++...+ .-+.+...+..-+...+.+++ +||+++.++|+...+.+..|+..
T Consensus 426 Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 426 LKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred ceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 3444444555554444421 111222233322234455666 69999999999999988888754
No 135
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=87.94 E-value=1.2 Score=31.05 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceE---EEecCCCCC---CCCCChHHHHHHHHHHHHh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKL---IVLEGVGHC---PHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~gH~---~~~~~p~~~~~~i~~fl~~ 99 (103)
+..+.+|+.+.+|.+|.++.+++ .+.+....++... ..+++=.|+ .-.+-++.+.+.|.+.++.
T Consensus 328 l~~i~~P~~l~~g~~D~l~~~~D-----V~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~ 397 (403)
T KOG2624|consen 328 LTNIKVPTALYYGDNDWLADPED-----VLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRL 397 (403)
T ss_pred ccccccCEEEEecCCcccCCHHH-----HHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHh
Confidence 56789999999999999998883 4544444455433 226777884 2335678888888888764
No 136
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=86.65 E-value=0.76 Score=32.02 Aligned_cols=60 Identities=17% Similarity=0.356 Sum_probs=36.5
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
++.++|+|.+.|.+|+++|.+ -.+.++..-.+.+...++... +++-- +.-...+..||+.
T Consensus 349 rr~~~plL~i~~~~D~v~P~e-----D~~lia~~s~~gk~~~~~~~~--~~~gy-~~al~~~~~Wl~~ 408 (411)
T PF06500_consen 349 RRCPTPLLAINGEDDPVSPIE-----DSRLIAESSTDGKALRIPSKP--LHMGY-PQALDEIYKWLED 408 (411)
T ss_dssp S-BSS-EEEEEETT-SSS-HH-----HHHHHHHTBTT-EEEEE-SSS--HHHHH-HHHHHHHHHHHHH
T ss_pred CCCCcceEEeecCCCCCCCHH-----HHHHHHhcCCCCceeecCCCc--cccch-HHHHHHHHHHHHH
Confidence 678899999999999999988 345555554567888888643 22222 3445667777764
No 137
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=82.25 E-value=3.2 Score=32.68 Aligned_cols=49 Identities=2% Similarity=-0.041 Sum_probs=33.7
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p 86 (103)
..+.+|++++.|..|...... ....+.+..++.+...++ ++|+.++..+
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~-----~~~~W~~~~~~~~~~~v~-g~H~~~~~~~ 1281 (1296)
T PRK10252 1233 VPFDGKATLFVAERTLQEGMS-----PEQAWSPWIAELDVYRQD-CAHVDIISPE 1281 (1296)
T ss_pred CcccCceEEEEcCCCCcccCC-----cccchhhhcCCCEEEECC-CCHHHHCCcH
Confidence 457789999999888654443 234455444567888886 5999887554
No 138
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=78.74 E-value=1.7 Score=28.90 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=47.5
Q ss_pred hHHHHHHHHhcCCC--CCCccccCCccCccEEEEecCCCCCCCCCCC-------------------ccchhhhcccCC--
Q 039699 10 GALDAFVSIVTGPP--GPNLVQLMPSISIPVLVLWGDQDPFTPLDGP-------------------VGKYFSSLPSKL-- 66 (103)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~i~~p~lii~g~~D~~~~~~~~-------------------~~~~~~~~~~~~-- 66 (103)
.+..+.+.+..-.. +...-+.+..-+.|+++++|.+|.++-.+-+ ..+....+.+.+
T Consensus 185 eA~na~r~m~~~df~~q~~~I~~ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~ 264 (297)
T PF06342_consen 185 EAINAMRSMQNCDFEEQKEYIDKLNKKPIKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFAS 264 (297)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccCCCcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhc
Confidence 34445554433221 1223344555669999999999987544310 000111121111
Q ss_pred --CCceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 67 --SNVKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 67 --~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
..+++ .+.+.||+.+=.+++-+++.+...|
T Consensus 265 ~~~~~sv-~f~~dgHf~qK~~A~lIA~~i~~mf 296 (297)
T PF06342_consen 265 GQKGASV-FFAKDGHFQQKFRADLIAEAIKKMF 296 (297)
T ss_pred CCceeEE-EEecCChHHhHHHHHHHHHHHHHhh
Confidence 12233 4445699988888888888877665
No 139
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=76.43 E-value=4.1 Score=30.10 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=33.7
Q ss_pred Ccc-CccEEEEecCCCCCCCCCCCccchhhhcccC---CCCceEEEecCCCCC
Q 039699 32 PSI-SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSK---LSNVKLIVLEGVGHC 80 (103)
Q Consensus 32 ~~i-~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~ 80 (103)
.++ ..|.+|++|..|-++|..-..+-+....+.. ....+++.+.++-||
T Consensus 551 g~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHf 603 (690)
T PF10605_consen 551 GNLHGKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHF 603 (690)
T ss_pred CCcCCCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeec
Confidence 345 5899999999999999885444443333221 124678889998887
No 140
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=75.42 E-value=1.7 Score=26.98 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=15.5
Q ss_pred CccEEEEecCCCCCCCCCC
Q 039699 35 SIPVLVLWGDQDPFTPLDG 53 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~ 53 (103)
..|+++++|.+|.+++.+.
T Consensus 168 ~p~~~i~hG~~D~vVp~~~ 186 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGN 186 (212)
T ss_pred CCeEEEEEcCCCceeCcch
Confidence 3456799999999999883
No 141
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=75.13 E-value=1.7 Score=28.20 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred ccCCccCccEEEEecCCCCCCCCCCCccchhhhcccCC-CCceEEEecCCCCC
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVGHC 80 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~ 80 (103)
..+.++++|++++.|-.|...... .-+..+.+.+.- .+.++++-| .+|.
T Consensus 222 ~~~~~i~vP~l~v~Gw~D~~~~~~--~~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 222 ERLDKIDVPVLIVGGWYDTLFLRG--ALRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp HHHGG--SEEEEEEETTCSSTSHH--HHHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred HHHhhCCCCEEEecccCCcccchH--HHHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 345789999999999999544433 111223333322 122666665 4774
No 142
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=63.88 E-value=18 Score=23.80 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=31.4
Q ss_pred cCccEEEEecCCCC--------CCCCCCCccchhhhc-ccCCCCceEEEecCCCCCCCCCCh
Q 039699 34 ISIPVLVLWGDQDP--------FTPLDGPVGKYFSSL-PSKLSNVKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 34 i~~p~lii~g~~D~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~gH~~~~~~p 86 (103)
..+|+++|....+. .+.+++. ..+++ .+.-+..-..+.++.||+=+++..
T Consensus 153 ~~~P~lviGtGLg~~~~~~~~~~CaP~g~---n~~~Ff~~~~~p~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 153 FSMPALVIGTGLGGEPRNPLFPPCAPAGV---NYREFFDECKPPSWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCCeEEEecccCcccccccCCCCCCCCC---CHHHHHHhcCCCEEEEEeCCCCchHhhcCC
Confidence 45999999877664 2333321 23344 333344566677889999888766
No 143
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=63.77 E-value=8.1 Score=25.21 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=29.7
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEe-cCCCC
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVL-EGVGH 79 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i-~~~gH 79 (103)
..++.+++|.+|..++.+ ..+++.+..++ .++.+. ++.-|
T Consensus 221 ~~kl~f~fg~~D~Wvp~~-----~~~~l~~~~~~~~~~~~v~~~~i~H 263 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNE-----TRDELIERYPGHEPDVVVDEEGIPH 263 (266)
T ss_pred CCEEEEEEeCCCCCCCHH-----HHHHHHHHcCCCCCeEEEecCCCCC
Confidence 679999999999999998 78888888773 333332 44455
No 144
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=63.08 E-value=5 Score=27.49 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=25.2
Q ss_pred cCCCCceEEEecCCCCCCCCCChHHHHHHHHHH
Q 039699 64 SKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLW 96 (103)
Q Consensus 64 ~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~f 96 (103)
+-..+..+..++.+||+++-++|+...-.++.+
T Consensus 378 ktyknl~f~wilraghmvp~Dnp~~a~hmlr~v 410 (414)
T KOG1283|consen 378 KTYKNLSFFWILRAGHMVPADNPAAASHMLRHV 410 (414)
T ss_pred hhhccceeEEeecccCcccCCCHHHHhhheeec
Confidence 334577889999999999999998766555444
No 145
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=61.14 E-value=13 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=44.0
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCC--ceEEEecCCCCCCCCCCh---HHHHHHHHHHHHhhc
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVGHCPHDDRP---ELVHEKMLLWLAETF 101 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~~~p---~~~~~~i~~fl~~~~ 101 (103)
+-.+-+-|+.|.+....+ .+.+..+-..+|. -+...-|++||+-...-. +++...|.+|+.+..
T Consensus 340 ~aL~tvEGEnDDIsgvGQ--TkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d 408 (415)
T COG4553 340 VALFTVEGENDDISGVGQ--TKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYD 408 (415)
T ss_pred eeEEEeecccccccccch--hHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhC
Confidence 667778899998866553 2245555555664 256788999998666443 566778889988754
No 146
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=60.18 E-value=8.8 Score=26.98 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=32.9
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCC-C-C--ceEEEecCCCCCC---CCCChHHHHHHHHHHHHhhc
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKL-S-N--VKLIVLEGVGHCP---HDDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~i~~~gH~~---~~~~p~~~~~~i~~fl~~~~ 101 (103)
-+.|++|+.|.-|..-.. ....+.+.+ + + .-.+.+||.|+.. ..++.+.+.+.|.+++...+
T Consensus 188 ~p~P~VIv~gGlDs~qeD------~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p 256 (411)
T PF06500_consen 188 KPYPTVIVCGGLDSLQED------LYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRP 256 (411)
T ss_dssp S-EEEEEEE--TTS-GGG------GHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHST
T ss_pred CCCCEEEEeCCcchhHHH------HHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCC
Confidence 357999999999986433 222222222 1 3 2345578887743 33455677888888887643
No 147
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=59.94 E-value=5 Score=25.55 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=23.9
Q ss_pred EEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC
Q 039699 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD 83 (103)
Q Consensus 39 lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~ 83 (103)
.++.|.+|.+.|+. ..+++=+ ....+..++ ++|++..
T Consensus 169 ~aiIg~~D~IFpp~-----nQ~~~W~--~~~~~~~~~-~~Hy~F~ 205 (213)
T PF04301_consen 169 KAIIGKKDRIFPPE-----NQKRAWQ--GRCTIVEID-APHYPFF 205 (213)
T ss_pred EEEEcCCCEEeCHH-----HHHHHHh--CcCcEEEec-CCCcCch
Confidence 37789999999988 2233221 224566676 6998653
No 148
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.92 E-value=18 Score=24.96 Aligned_cols=64 Identities=25% Similarity=0.275 Sum_probs=45.3
Q ss_pred CccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHHHh
Q 039699 35 SIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAE 99 (103)
Q Consensus 35 ~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~ 99 (103)
..+.+.+.+..|.+++.+.. .+..+...+..-++.-.-+.++-|..|. ..|....+...+|++.
T Consensus 225 ~~~~ly~~s~~d~v~~~~~i-e~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~ 289 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEI-EKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRS 289 (350)
T ss_pred cccceeecCCccccccHHHH-HHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHh
Confidence 67788888999999888731 1112233333334566667778897776 8889999999999986
No 149
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=56.51 E-value=4.5 Score=27.91 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=24.9
Q ss_pred CCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh
Q 039699 31 MPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p 86 (103)
...++.|+++|..+.=. .... ....+.+...-++..+..+.|+.|.-+.+-|
T Consensus 270 ~~~i~~P~L~InSe~f~-~~~~---~~~~~~~~~~~~~~~~~ti~gt~H~s~sD~~ 321 (379)
T PF03403_consen 270 YSKIPQPLLFINSESFQ-WWEN---IFRMKKVISNNKESRMLTIKGTAHLSFSDFP 321 (379)
T ss_dssp GGG--S-EEEEEETTT---HHH---HHHHHTT--TTS-EEEEEETT--GGGGSGGG
T ss_pred ccCCCCCEEEEECcccC-Chhh---HHHHHHHhccCCCcEEEEECCCcCCCcchhh
Confidence 35789999999876532 2211 0012233333356789999999997554443
No 150
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=54.76 E-value=9.8 Score=24.29 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.5
Q ss_pred ccEEEEecCCCCCCCCC
Q 039699 36 IPVLVLWGDQDPFTPLD 52 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~ 52 (103)
.|++|++|+.|..+.+.
T Consensus 170 ~P~~v~hG~~D~tV~~~ 186 (220)
T PF10503_consen 170 YPRIVFHGTADTTVNPQ 186 (220)
T ss_pred CCEEEEecCCCCccCcc
Confidence 59999999999988887
No 151
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=54.76 E-value=23 Score=24.44 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=44.5
Q ss_pred cCCccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 30 LMPSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 30 ~~~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
...+.+.|+++|.-++=+ .+.. -..++.......+..++.+.|+=|..+-+-|-.+-..|..+++
T Consensus 282 ~~~~arqP~~finv~~fQ-~~en---~~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~ 346 (399)
T KOG3847|consen 282 QYSQARQPTLFINVEDFQ-WNEN---LLVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFK 346 (399)
T ss_pred hhhhccCCeEEEEccccc-chhH---HHHHHhhhCCCccceEEEEccceecccccCccccHHHHHHHhc
Confidence 356788999999854433 3322 1124444444445688999999999888888887777777765
No 152
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=53.29 E-value=24 Score=17.79 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=25.8
Q ss_pred CCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 65 KLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 65 ~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
..|+ +.+.+-++.+++-.|.++++.+.+.+|-++
T Consensus 24 ~~PD-TvItL~~G~k~vV~Es~~eVi~ki~~y~~~ 57 (60)
T PF06289_consen 24 ETPD-TVITLTNGKKYVVKESVEEVIEKIIEYRRK 57 (60)
T ss_pred EcCC-eEEEEeCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4577 445555557788889999999999999775
No 153
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.15 E-value=60 Score=21.36 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=25.6
Q ss_pred hcccCCCCceEEEecCCCCCCCCCCh--HHHHHHHHHHHHhh
Q 039699 61 SLPSKLSNVKLIVLEGVGHCPHDDRP--ELVHEKMLLWLAET 100 (103)
Q Consensus 61 ~~~~~~~~~~~~~i~~~gH~~~~~~p--~~~~~~i~~fl~~~ 100 (103)
.+...+.+.....++ ++|+-+++.| +.+...+.+.+...
T Consensus 212 ~W~~~~~~~~~~~i~-g~H~~ml~ep~~~~~~~~i~~~l~~~ 252 (257)
T COG3319 212 GWSGWIADLDIVRID-GTHFDMLKEPHVATVAPLILAALNAI 252 (257)
T ss_pred cHHHHhCCCCeeecc-ccHHHHhcchhhHHHHHHHHHHHhhc
Confidence 444555555455566 5999888877 45667777777654
No 154
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=49.74 E-value=36 Score=17.42 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=32.1
Q ss_pred hhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhhc
Q 039699 58 YFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 58 ~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~~ 101 (103)
..+.+ +.+|+.++..+.| .-++.-+.-+++.+.|.+|.++..
T Consensus 18 ~IE~i-e~~PDttItLinG-kkyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 18 HIETI-EAFPDTTITLING-KKYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred Hhhhh-hccCCcEEEEEcC-cEEEEcccHHHHHHHHHHHHHHhh
Confidence 34454 4569988888874 678888888999999999987643
No 155
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=48.59 E-value=63 Score=21.48 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=34.7
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCC-CCCCCC-CChHHHHHHHHHHH
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV-GHCPHD-DRPELVHEKMLLWL 97 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-gH~~~~-~~p~~~~~~i~~fl 97 (103)
....+|+.++.|++ . ..++.++.+|+++.+.++.+ |++... -.|++..+.|.+-.
T Consensus 144 g~~gVPV~lVsGDd-~----------~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa 200 (270)
T cd08769 144 GEFGVPVVLVAGDS-E----------LEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAV 200 (270)
T ss_pred hhcCCCEEEEecCH-H----------HHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHH
Confidence 45689999999965 2 23455556688887777654 544443 55566666655444
No 156
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=47.83 E-value=31 Score=24.06 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=21.4
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCC
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHC 80 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~ 80 (103)
-.+++..|..|+..... .... .-+....++||+++|.
T Consensus 377 tnviFtNG~~DPW~~lg-----v~~~---~~~~~~~~~I~g~~Hc 413 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALG-----VTSD---SSDSVPAIVIPGGAHC 413 (434)
T ss_dssp -SEEEEEETT-CCGGGS-------S----SSSSEEEEEETT--TT
T ss_pred CeEEeeCCCCCCccccc-----CCCC---CCCCcccEEECCCeee
Confidence 57999999999975443 1122 1234556789999997
No 157
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=46.94 E-value=22 Score=23.29 Aligned_cols=60 Identities=22% Similarity=0.380 Sum_probs=37.4
Q ss_pred CccEEEEecC------CCCCCCCCCCccchhhhccc-CCCCceEEEecC--CCCCCCCCChHHHHHHHHHHH
Q 039699 35 SIPVLVLWGD------QDPFTPLDGPVGKYFSSLPS-KLSNVKLIVLEG--VGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 35 ~~p~lii~g~------~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~--~gH~~~~~~p~~~~~~i~~fl 97 (103)
.+.+|-|.|+ .|..++... ....+.+.+ .....+-.++.| +.|.-..+++ .+.+.|..||
T Consensus 184 ~i~VLnI~G~~~~g~~sDG~V~~~S--s~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FL 252 (255)
T PF06028_consen 184 NIQVLNIYGDLEDGSNSDGIVPNAS--SLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFL 252 (255)
T ss_dssp T-EEEEEEEESBTTCSBTSSSBHHH--HCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHH
T ss_pred CeEEEEEecccCCCCCCCeEEeHHH--HHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHh
Confidence 4678999998 666666652 112333332 223345566654 5798777887 6668898887
No 158
>COG4099 Predicted peptidase [General function prediction only]
Probab=43.03 E-value=26 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=19.7
Q ss_pred CCcc-CccEEEEecCCCCCCCCCCC
Q 039699 31 MPSI-SIPVLVLWGDQDPFTPLDGP 54 (103)
Q Consensus 31 ~~~i-~~p~lii~g~~D~~~~~~~~ 54 (103)
++.+ +.|++++++.+|.++|.+.+
T Consensus 310 v~~lk~~piWvfhs~dDkv~Pv~nS 334 (387)
T COG4099 310 VRTLKKAPIWVFHSSDDKVIPVSNS 334 (387)
T ss_pred hhhhccCceEEEEecCCCccccCcc
Confidence 3444 48999999999999999865
No 159
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=39.38 E-value=1.4e+02 Score=21.41 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=35.6
Q ss_pred CccccCCccC-ccEEEEecCCCC--CCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 26 NLVQLMPSIS-IPVLVLWGDQDP--FTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 26 ~~~~~~~~i~-~p~lii~g~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
+..+.+.+|+ ..+.-|+|.++. .+|.. .. .+.+.+.+|| ||.+- ++-+.+++.|.+=++
T Consensus 386 ~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~l----------~~--~~~~~v~lpG-gHHFd-~dy~~la~~il~~~~ 447 (456)
T COG3946 386 DVVPDIAKLPLARVQCIYGQEEKDTACPSL----------KA--KGVDTVKLPG-GHHFD-GDYEKLAKAILQGMR 447 (456)
T ss_pred CcchhhhhCCcceeEEEecCccccccCCcc----------hh--hcceeEecCC-CcccC-ccHHHHHHHHHHHHH
Confidence 3344455554 457777887544 44433 11 3667889997 66533 566788888776654
No 160
>COG3411 Ferredoxin [Energy production and conversion]
Probab=39.25 E-value=57 Score=16.71 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=24.1
Q ss_pred CceEEEecCCCCCCCCCChHHHHHHHHHHHH
Q 039699 68 NVKLIVLEGVGHCPHDDRPELVHEKMLLWLA 98 (103)
Q Consensus 68 ~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~ 98 (103)
+-.++++|+ |+|.-.-.|+...+.+.+.+.
T Consensus 17 gPvl~vYpe-gvWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPE-GVWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecC-CeeEeccCHHHHHHHHHHHHh
Confidence 346788887 899999999888888887776
No 161
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=38.72 E-value=39 Score=16.88 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHhhcC
Q 039699 84 DRPELVHEKMLLWLAETFN 102 (103)
Q Consensus 84 ~~p~~~~~~i~~fl~~~~~ 102 (103)
|=|+.+.+.+..|++..+.
T Consensus 5 eiPe~L~~~m~~fie~hP~ 23 (57)
T PF10929_consen 5 EIPEDLHQAMKDFIETHPN 23 (57)
T ss_pred cccHHHHHHHHHHHHcCCC
Confidence 5578888888888877654
No 162
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=37.48 E-value=65 Score=20.72 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=21.7
Q ss_pred CceEEEecCCCCCCCCCCh--HHHHHHHHHHHHh
Q 039699 68 NVKLIVLEGVGHCPHDDRP--ELVHEKMLLWLAE 99 (103)
Q Consensus 68 ~~~~~~i~~~gH~~~~~~p--~~~~~~i~~fl~~ 99 (103)
+...+++|| ||..+.+-+ +.+.+.+..|.+.
T Consensus 96 dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~ 128 (232)
T cd03148 96 EYAAVFIPG-GHGALIGIPESQDVAAALQWAIKN 128 (232)
T ss_pred hceEEEECC-CCCChhhcccCHHHHHHHHHHHHc
Confidence 467889996 898775433 4677777777754
No 163
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=36.09 E-value=19 Score=17.93 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=19.7
Q ss_pred CceEEEecCCCCCCCCCChHHHHHHHHHHH
Q 039699 68 NVKLIVLEGVGHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 68 ~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl 97 (103)
+..+. ..++||.+++.++ .|...+...+
T Consensus 29 Dikik-C~gCg~~imlpR~-~feK~~Kkvi 56 (57)
T PF06107_consen 29 DIKIK-CLGCGRQIMLPRS-KFEKRLKKVI 56 (57)
T ss_pred cEEEE-ECCCCCEEEEeHH-HHHHHHHHhc
Confidence 44454 7789999999886 6666666554
No 164
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=35.26 E-value=36 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=20.9
Q ss_pred ceEEEecCCCCCCCCCChHHHHHHHHHHHHh
Q 039699 69 VKLIVLEGVGHCPHDDRPELVHEKMLLWLAE 99 (103)
Q Consensus 69 ~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~ 99 (103)
.....++ +.|..++.++ .+.+.|..||+.
T Consensus 393 ~~~~~l~-~~H~~il~n~-~v~~~I~~fL~~ 421 (440)
T PLN02733 393 VARVGVP-GDHRGILRDE-HVFRILKHWLKV 421 (440)
T ss_pred cccccCC-chHHHHhcCH-HHHHHHHHHHhc
Confidence 3345556 6898888775 667888899864
No 165
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=34.54 E-value=80 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.0
Q ss_pred ccCCccCccEEEEecCCCCCCCC
Q 039699 29 QLMPSISIPVLVLWGDQDPFTPL 51 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D~~~~~ 51 (103)
..+.++++|++++.|=.|..+..
T Consensus 226 ~~~~~i~vP~l~~~gw~D~~~~g 248 (550)
T TIGR00976 226 RDLGGSDVPTLVTGGWYDNHSRG 248 (550)
T ss_pred hHhcCCCCCEEEeCcccCCCCch
Confidence 35668999999999999964443
No 166
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=32.69 E-value=72 Score=21.97 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=16.3
Q ss_pred CCccCccEEEEecCCCCCCCC
Q 039699 31 MPSISIPVLVLWGDQDPFTPL 51 (103)
Q Consensus 31 ~~~i~~p~lii~g~~D~~~~~ 51 (103)
+....+|+++|.|+.|.....
T Consensus 71 l~~~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 71 LKDAGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred hccCCCcEEEecCCCCchhcc
Confidence 344679999999999986433
No 167
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=31.28 E-value=1.6e+02 Score=19.59 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=34.4
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCC-CCCCCC-CChHHHHHHHHHHH
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV-GHCPHD-DRPELVHEKMLLWL 97 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-gH~~~~-~~p~~~~~~i~~fl 97 (103)
....+|+.++.|++- + .++.++.+|+++.+.++.+ |++... -.|.+..+.|.+-.
T Consensus 143 g~~gVPV~lvsGDd~-~----------~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a 199 (265)
T cd00281 143 GYYGVPVVMVAGDAE-V----------CKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGT 199 (265)
T ss_pred hhcCCCEEEEecCHH-H----------HHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHHHH
Confidence 456899999988543 2 2334556688887777654 544443 45666666665544
No 168
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=30.88 E-value=67 Score=19.44 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=24.3
Q ss_pred CceEEEecCCCCCCCCCCh-HHHHHHHHHHHHh
Q 039699 68 NVKLIVLEGVGHCPHDDRP-ELVHEKMLLWLAE 99 (103)
Q Consensus 68 ~~~~~~i~~~gH~~~~~~p-~~~~~~i~~fl~~ 99 (103)
+....++||+.|......+ +.+.+.+.+|.+.
T Consensus 66 ~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~ 98 (188)
T COG0693 66 DYDALVIPGGDHGPEYLRPDPDLLAFVRDFYAN 98 (188)
T ss_pred HCCEEEECCCccchhhccCcHHHHHHHHHHHHc
Confidence 6789999984499888777 6677777777654
No 169
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.59 E-value=41 Score=20.93 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=21.9
Q ss_pred EecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCC
Q 039699 41 LWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCP 81 (103)
Q Consensus 41 i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~ 81 (103)
+.|.+|.+.|+. ....+.. +...++.+.| +|+.
T Consensus 170 ~v~skDkIFpp~-----nq~ayw~--~rc~v~ei~g-~H~~ 202 (214)
T COG2830 170 YVGSKDKIFPPA-----NQHAYWN--ARCAVIEING-EHYL 202 (214)
T ss_pred hccCCCcccCCc-----chhhhhc--cceeEEEecC-cceE
Confidence 458899988887 2333332 4567888875 8854
No 170
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=29.49 E-value=1.5e+02 Score=19.32 Aligned_cols=36 Identities=8% Similarity=0.309 Sum_probs=18.6
Q ss_pred EEEecCCCCCCCCCCCccchhhhcccCC--CCceEEEecCCCC
Q 039699 39 LVLWGDQDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVGH 79 (103)
Q Consensus 39 lii~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH 79 (103)
++|.|..|...... ..+++.+.. ++.++.++|-++.
T Consensus 2 ~~iGG~~~~~~~~~-----i~~~~~~lag~~~~rI~~iptAS~ 39 (250)
T TIGR02069 2 VIIGGAEDKVGDRE-----ILREFVSRAGGEDAIIVIITSASE 39 (250)
T ss_pred eEEeCccccCChHH-----HHHHHHHHhCCCCceEEEEeCCCC
Confidence 45666666533332 233443332 2457788887653
No 171
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.53 E-value=89 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=31.0
Q ss_pred ccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCC
Q 039699 36 IPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGH 79 (103)
Q Consensus 36 ~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH 79 (103)
+|++|..|.+|-.+--..+..+..++--++...++++.++.+|-
T Consensus 899 ~P~FI~~~~~dI~TECKApEKEfaErqt~R~RPaRLIFYD~~G~ 942 (1034)
T KOG4150|consen 899 VPTFITCNYSDIATECKAPEKEFAERQTQRYRPARLIFYDPGGT 942 (1034)
T ss_pred cceEEecCchhhcccCCCchHHHHHhhhhccCcceEEEEcCCCC
Confidence 79999999888765544444455555555555689999987765
No 172
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=25.77 E-value=2.1e+02 Score=19.07 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=34.3
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCC-CCCCCCCChHHHHHHHHHHH
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV-GHCPHDDRPELVHEKMLLWL 97 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-gH~~~~~~p~~~~~~i~~fl 97 (103)
....+|+.++.|++- + .++.++.+|+++.+.++.+ |...---.|+...+.|.+-.
T Consensus 144 g~~gVPV~lvsGD~~-~----------~~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~ 199 (263)
T cd08770 144 AYLGVPVVFVSGDAG-L----------CAEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGV 199 (263)
T ss_pred hhcCCCEEEEecCHH-H----------HHHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHH
Confidence 456899999988543 2 2334555688877777653 42223356677777776655
No 173
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=25.40 E-value=1e+02 Score=19.47 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=30.1
Q ss_pred cCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCC
Q 039699 34 ISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 77 (103)
Q Consensus 34 i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 77 (103)
...|.+++.|..+...+.+ ..+.+++.+.+.=+.+++..
T Consensus 52 ~~yP~ly~~g~~~~~~s~~-----e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 52 FFYPFLYWPGHGDFPLSDE-----EIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred HhCCEEEEeCCCCCCCCHH-----HHHHHHHHHHcCCEEEEECC
Confidence 3689999999999855554 57778888777778888765
No 174
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=24.93 E-value=1.9e+02 Score=18.27 Aligned_cols=11 Identities=9% Similarity=0.480 Sum_probs=6.4
Q ss_pred CceEEEecCCC
Q 039699 68 NVKLIVLEGVG 78 (103)
Q Consensus 68 ~~~~~~i~~~g 78 (103)
+.++.++|-++
T Consensus 29 ~~~i~~iptA~ 39 (217)
T cd03145 29 GARIVVIPAAS 39 (217)
T ss_pred CCcEEEEeCCC
Confidence 45666666554
No 175
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=24.75 E-value=99 Score=20.99 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCCCCh
Q 039699 43 GDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHDDRP 86 (103)
Q Consensus 43 g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~~~p 86 (103)
|..+.++++- ++..+.+.+..-...+..++| ||-.-.-+|
T Consensus 247 ~~~~~~~~pN---r~L~~~L~~~g~~~~yre~~G-gHdw~~Wr~ 286 (299)
T COG2382 247 GEEGDFLRPN---RALAAQLEKKGIPYYYREYPG-GHDWAWWRP 286 (299)
T ss_pred Cccccccchh---HHHHHHHHhcCCcceeeecCC-CCchhHhHH
Confidence 4444455554 334555555444578889997 997554444
No 176
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=24.55 E-value=48 Score=15.69 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=9.8
Q ss_pred ceEEEecCCCCCCCC
Q 039699 69 VKLIVLEGVGHCPHD 83 (103)
Q Consensus 69 ~~~~~i~~~gH~~~~ 83 (103)
++-=++||-||.-+.
T Consensus 30 aEsPv~PGn~hlQP~ 44 (45)
T PF08384_consen 30 AESPVFPGNGHLQPL 44 (45)
T ss_pred CCCCccCCCcccCCC
Confidence 344578888887543
No 177
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=23.94 E-value=1.5e+02 Score=22.86 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=44.2
Q ss_pred CccCccEEEEecCCCCCCCCCCCccchhhhcccCCCCceEEEecCCCCCCCC-CChHHHHHHHHHHHHh
Q 039699 32 PSISIPVLVLWGDQDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVGHCPHD-DRPELVHEKMLLWLAE 99 (103)
Q Consensus 32 ~~i~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-~~p~~~~~~i~~fl~~ 99 (103)
+.=+...++++|--|+-+-..- .......+.+..+.-++.++|+-.|.+=- +.-+-....+..|+++
T Consensus 799 pdepnRLlLvHGliDENVHF~H-ts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 799 PDEPNRLLLVHGLIDENVHFAH-TSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred CCCCceEEEEecccccchhhhh-HHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 3335679999999999776651 00012233333445799999999997654 4445667788899875
No 178
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=22.95 E-value=62 Score=17.48 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=13.6
Q ss_pred CCceEEEecCCCCCCCCCC
Q 039699 67 SNVKLIVLEGVGHCPHDDR 85 (103)
Q Consensus 67 ~~~~~~~i~~~gH~~~~~~ 85 (103)
.+..+.++|+ ||.+|...
T Consensus 89 ~~~~f~~~p~-~~v~H~~C 106 (109)
T PF10367_consen 89 GNSVFVVFPC-GHVVHYSC 106 (109)
T ss_pred CCceEEEeCC-CeEEeccc
Confidence 4577999997 79888654
No 179
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=22.36 E-value=60 Score=18.49 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=12.7
Q ss_pred ccCCccCccEEEEecCCC
Q 039699 29 QLMPSISIPVLVLWGDQD 46 (103)
Q Consensus 29 ~~~~~i~~p~lii~g~~D 46 (103)
..+.+.+||+|++-...|
T Consensus 125 ~v~~~a~~pVLvv~~~~~ 142 (144)
T PRK15118 125 QLINTVHVDMLIVPLRDE 142 (144)
T ss_pred HHHhhCCCCEEEecCCcC
Confidence 345678899999876444
No 180
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=22.24 E-value=69 Score=22.59 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=14.9
Q ss_pred ccCccEEEEecCCCCCCC
Q 039699 33 SISIPVLVLWGDQDPFTP 50 (103)
Q Consensus 33 ~i~~p~lii~g~~D~~~~ 50 (103)
.+..|+++|+|..|....
T Consensus 108 ~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 108 NVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred cCCCCEEEEcCCCCCccc
Confidence 367999999999998653
No 181
>PLN02606 palmitoyl-protein thioesterase
Probab=22.01 E-value=1.5e+02 Score=20.19 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred CceEEEecCCCCCCCCCChHHHHHHHHHHHHhhc
Q 039699 68 NVKLIVLEGVGHCPHDDRPELVHEKMLLWLAETF 101 (103)
Q Consensus 68 ~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~~ 101 (103)
...++.+|| .|.-. ..+.+.+.|..||....
T Consensus 267 kl~f~~v~G-~Hl~~--~~~~~~~~i~pyL~~~~ 297 (306)
T PLN02606 267 KVKFISVPG-GHIEI--AEEDLVKYVVPYLQNES 297 (306)
T ss_pred CeEEEecCC-chhee--cHHHHHHHHHHHhccCC
Confidence 457888997 88755 55788889999997543
No 182
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=21.68 E-value=94 Score=17.95 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCCCCccccCCcc-CccEEEEecCCCC
Q 039699 12 LDAFVSIVTGPPGPNLVQLMPSI-SIPVLVLWGDQDP 47 (103)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i-~~p~lii~g~~D~ 47 (103)
+.++........+.-.+..+..+ ..|++||.|.+++
T Consensus 64 i~w~e~~r~~dp~~Fcr~a~~~~~~~~V~iIsd~Rr~ 100 (116)
T PF04275_consen 64 IAWGEEQRNQDPGFFCRAAVEEAADVDVWIISDMRRK 100 (116)
T ss_dssp HHHHHHHHHH-TTTTHHHHSBT----SEEEE----SH
T ss_pred HHHHHHHHhhCcchHHHHHHHhhccCCeEEEeCCCcc
Confidence 33444443333344444556666 8999999988775
No 183
>COG3910 Predicted ATPase [General function prediction only]
Probab=21.54 E-value=2.2e+02 Score=18.46 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCceEEEecCCCCCCCCCChHHHHHHHHHHHHhh
Q 039699 66 LSNVKLIVLEGVGHCPHDDRPELVHEKMLLWLAET 100 (103)
Q Consensus 66 ~~~~~~~~i~~~gH~~~~~~p~~~~~~i~~fl~~~ 100 (103)
+|+++++.+..+|+-...-.-.+--+.++.|+...
T Consensus 193 iP~A~I~~~~~~g~~~~~fe~te~~r~lR~Fl~dp 227 (233)
T COG3910 193 IPGAEIYEISESGIEERDFEETEHFRALRDFLNDP 227 (233)
T ss_pred CCCcEEEEEecCCccccchHHHHHHHHHHHHHhCH
Confidence 58899999999887544322223346778888753
No 184
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=20.60 E-value=1.5e+02 Score=19.06 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=21.0
Q ss_pred CceEEEecCCCCCCCC--CChHHHHHHHHHHHHh
Q 039699 68 NVKLIVLEGVGHCPHD--DRPELVHEKMLLWLAE 99 (103)
Q Consensus 68 ~~~~~~i~~~gH~~~~--~~p~~~~~~i~~fl~~ 99 (103)
+...+++|| ||-.+. .+-+.+.+.+..|.+.
T Consensus 94 dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~ 126 (231)
T cd03147 94 DYGIFFVAG-GHGTLFDFPHATNLQKIAQQIYAN 126 (231)
T ss_pred hCcEEEECC-CCchhhhcccCHHHHHHHHHHHHc
Confidence 457889997 787544 3334677778887764
Done!