BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039701
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 141/511 (27%), Positives = 219/511 (42%), Gaps = 72/511 (14%)
Query: 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQ 60
M + A + H ++ P+ QGH+ P+ +A+LL G +T V T N R + RG +
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRL--LKSRGPK 58
Query: 61 SGLRIQVIEF------YFPCQEVG-----LPEGCESWDK---LPSMALLPKFFAAIEMLR 106
+ F P + G +P C+S K P LL + + +
Sbjct: 59 AFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNV-- 116
Query: 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVXXXXXXXXXXXXXXXXVSKAH 166
P CL+SD C+ +T+ +A +F +P ++
Sbjct: 117 -----------PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVER 165
Query: 167 ESVSSDSEYFL-----------VPGLP-----DRVEITKAQLPEILKLKSFGEPILAAEM 210
+ E +L +PGL D V+ + P + L+ F E +
Sbjct: 166 GIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIE-VADRVN 224
Query: 211 ASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSN---DGS 267
+++N+F ELE + + ++ +GP+ K+ + SN + +
Sbjct: 225 KDTTILLNTFNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDT 283
Query: 268 GCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRP-----GDQAF 322
CL WL+S +PGS VYV GS + QL+E GL KK F+W+IRP G F
Sbjct: 284 ECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIF 343
Query: 323 E-KFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFAD 381
+F I RGL I W PQ +L+HP+IGGFLTHCGWNS E++ G+PM+ WPFFAD
Sbjct: 344 SSEFTNEIADRGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFAD 402
Query: 382 QFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXX 441
Q + + + IG+ I VK+E++ K IN ++
Sbjct: 403 QPTDCRFICNEWEIGMEIDTN--------------VKREELAKLINEVIAGDKGKKMKQK 448
Query: 442 XXXXXXXTAKTAIEEGGSSYLNIKLLIKDIL 472
A+ GG SY+N+ +IKD+L
Sbjct: 449 AMELKKK-AEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 209/468 (44%), Gaps = 95/468 (20%)
Query: 10 HFILFPFLAQGHMIPMIDIA-RLLAQHGALVTIVTT---PMNAARFQNVIERGIQSGLRI 65
H + P GH+IP+++ A RL+ HG VT V P + A +R + L
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKA------QRTVLDSLPS 61
Query: 66 QVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLIS 125
+ + P ++ S ++ S L + E LR ++ F E P L+
Sbjct: 62 SISSVFLPPVDL---TDLSSSTRIESRISLTVTRSNPE-LRKVFDS-FVEGGRLPTALVV 116
Query: 126 DVCLPWTVSSACKFNVPRIVXXXXXXXXXXXXXXXXVSKAHESVSSDSEYFL-VPGLPDR 184
D+ A +F+VP + + + ++ +FL +P L +
Sbjct: 117 DLFGTDAFDVAVEFHVPPYIF-------------------YPTTANVLSFFLHLPKLDET 157
Query: 185 VEITKAQLPEILKL--------KSFGEPILAAEMASY--------------GVIVNSFEE 222
V +L E L L K F +P + +Y G++VN+F E
Sbjct: 158 VSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFE 217
Query: 223 LEPAYVEEYKNARDGK--VWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGS 280
LEP ++ + K V+ VGP+ K++ + E S CLKWLD+ GS
Sbjct: 218 LEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEE--------SECLKWLDNQPLGS 269
Query: 281 AVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRP-----GDQAFEK----------- 324
+YV GS + QL EL LGL +++ F+WVIR F+
Sbjct: 270 VLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLP 329
Query: 325 --FEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 382
F ER + RG +I WAPQ +L+HP+ GGFLTHCGWNS LE+V +G+P++ WP +A+Q
Sbjct: 330 PGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 389
Query: 383 FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 430
N L+ + +R A RP + D G+ V++E+V + + LM
Sbjct: 390 KMNAVLLSEDIR-----AALRPRAGDD----GL-VRREEVARVVKGLM 427
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 145/303 (47%), Gaps = 40/303 (13%)
Query: 177 LVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYG--------VIVNSFEELEPAYV 228
++PG P E+ + LPE + +K P A + G V +NSF + P +
Sbjct: 178 VLPGFP---ELKASDLPEGV-IKDIDVP-FATMLHKMGLELPRANAVAINSFATIHP-LI 231
Query: 229 EEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGS 288
E N++ + VGP +L + + +D GCL+WLD + S VY+ GS
Sbjct: 232 ENELNSKFKLLLNVGPFNLTTPQ---------RKVSDEHGCLEWLDQHENSSVVYISFGS 282
Query: 289 LCDCSTRQLIELGLGLEATKKPFIWVIR--PGDQAFEKFEERIEGRGLLIRGWAPQVVIL 346
+ +L L LE PFIW R P ++ + F ER + +G ++ WAPQV IL
Sbjct: 283 VVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIV-AWAPQVEIL 341
Query: 347 SHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPS 406
H ++G FLTH GWNSVLE + G+PM++ PFF DQ N L VL IGV +
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV------- 394
Query: 407 LADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXXXXXXXXXTAKTAIEEGGSSYLNIKL 466
NGV + KE +KKA+ + M K A+E+ G+S ++
Sbjct: 395 -----DNGV-LTKESIKKALELTMSSEKGGIMRQKIVKLKESAFK-AVEQNGTSAMDFTT 447
Query: 467 LIK 469
LI+
Sbjct: 448 LIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 13/188 (6%)
Query: 214 GVIVNSFEELEPAYVEEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWL 273
V +NSFEEL+ + + K ++ +GP +L + + +GCL+WL
Sbjct: 216 AVFINSFEELDDSLTNDLK-SKLKTYLNIGPFNLITPPPV---------VPNTTGCLQWL 265
Query: 274 DSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAF--EKFEERIEG 331
+P S VY+ G++ +++ L LEA++ PFIW +R + E F E+ G
Sbjct: 266 KERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRG 325
Query: 332 RGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQ 391
G+++ WAPQ +L+H A+G F+THCGWNS+ E+V+ G+P++ PFF DQ N ++V
Sbjct: 326 YGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED 384
Query: 392 VLRIGVTI 399
VL IGV I
Sbjct: 385 VLEIGVRI 392
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 217/487 (44%), Gaps = 47/487 (9%)
Query: 3 SQAGSQLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN-VIERGI 59
S I P GH+ ++ A+LL H +T+ F + I+ +
Sbjct: 4 SDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL 63
Query: 60 QSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPK 119
S +IQ+I+ EV P + K P +L + I ++ ++T+ K
Sbjct: 64 ASQPQIQLIDL----PEVEPPP--QELLKSPEFYILTFLESLIPHVKATIKTILSN---K 114
Query: 120 PGCLISDVCLPWTVSSACKFNVPR---IVXXXXXXXXXXXXXXXXVSKAHESVSSDSEYF 176
L+ D + +F +P + + + + D +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL 174
Query: 177 LVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMA-----SYGVIVNSFEELEPAYVEEY 231
+PG+ ++V LP+ K G I ++A + G+IVN+F +LE + ++
Sbjct: 175 NIPGISNQV--PSNVLPDACFNKD-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 232 KNARDGKV---WCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGS 288
+ D K+ + VGP+ + KL D+ +D LKWLD S V++C GS
Sbjct: 232 YD-HDEKIPPIYAVGPLLDLKGQPNPKL---DQAQHDL--ILKWLDEQPDKSVVFLCFGS 285
Query: 289 L-CDCSTRQLIELGLGLEATKKPFIWVIRPGDQAF-EKFEE--RIEGRGLLIRGWAPQVV 344
+ Q+ E+ LGL+ + F+W + F E F E +EG+G+ I GWAPQV
Sbjct: 286 MGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGM-ICGWAPQVE 344
Query: 345 ILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 404
+L+H AIGGF++HCGWNS+LE++ G+P++TWP +A+Q N +V+ GV +G
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVGLGLR-- 400
Query: 405 PSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXXXXXXXXXTAKTAIEEGGSSYLNI 464
D + V E+++K + LM ++ A+ +GGSS +++
Sbjct: 401 ---VDYRKGSDVVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 465 KLLIKDI 471
LI DI
Sbjct: 455 GKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 217/487 (44%), Gaps = 47/487 (9%)
Query: 3 SQAGSQLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN-VIERGI 59
S I P GH+ ++ A+LL H +T+ F + I+ +
Sbjct: 4 SDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL 63
Query: 60 QSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPK 119
S +IQ+I+ EV P + K P +L + I ++ ++T+ K
Sbjct: 64 ASQPQIQLIDL----PEVEPPP--QELLKSPEFYILTFLESLIPHVKATIKTILSN---K 114
Query: 120 PGCLISDVCLPWTVSSACKFNVPR---IVXXXXXXXXXXXXXXXXVSKAHESVSSDSEYF 176
L+ D + +F +P + + + + D +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL 174
Query: 177 LVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMA-----SYGVIVNSFEELEPAYVEEY 231
+PG+ ++V LP+ K G I ++A + G+IVN+F +LE + ++
Sbjct: 175 NIPGISNQV--PSNVLPDACFNKD-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 232 KNARDGKV---WCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGS 288
+ D K+ + VGP+ + KL D+ +D LKWLD S V++C GS
Sbjct: 232 YD-HDEKIPPIYAVGPLLDLKGQPNPKL---DQAQHDL--ILKWLDEQPDKSVVFLCFGS 285
Query: 289 L-CDCSTRQLIELGLGLEATKKPFIWVIRPGDQAF-EKFEE--RIEGRGLLIRGWAPQVV 344
+ Q+ E+ LGL+ + F+W + F E F E +EG+G+ I GWAPQV
Sbjct: 286 MGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGM-ICGWAPQVE 344
Query: 345 ILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 404
+L+H AIGGF++HCGWNS+LE++ G+P++TWP +A+Q N +V+ GV +G
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVGLGLR-- 400
Query: 405 PSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXXXXXXXXXTAKTAIEEGGSSYLNI 464
D + V E+++K + LM ++ A+ +GGSS +++
Sbjct: 401 ---VDYRKGSDVVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 465 KLLIKDI 471
LI DI
Sbjct: 455 GKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 339 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCN 385
W PQ +L HP F+TH G N + EA+ +G+P V P FADQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 336 IRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV 392
+ W PQ+ IL+ + F+TH G S +EA+SN +PMV P A+Q N + +V++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 336 IRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLV 389
+ W PQ+ IL + F+TH G E ++ PM+ P DQF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 339 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 383
W PQ +L H + + H G + L A+ G+P +++P+ D F
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48
Q H + GH+ P + + LA+ G +T VTTP+ A
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFA 44
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 339 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 382
W P +L+H LTH +VLEA + G+P+V P FA +
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3RNB|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3RNF|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3RN9|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3RNG|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3RNC|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|2RDB|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
Length = 498
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|1T0Q|A Chain A, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|A Chain A, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
Length = 498
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3RNE|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI276E DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3RNA|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3N1Z|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
Length = 498
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3N20|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
Length = 498
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|2INC|A Chain A, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
pdb|2IND|A Chain A, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 491
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 303 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 350
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 351 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 397
>pdb|3N1X|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
Length = 498
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|3N1Y|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
Length = 498
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIG-- 352
RQL++LGL KP+ W DQ + +E G L + W P + PA G
Sbjct: 304 RQLLDLGL-----DKPWYW-----DQFMQDLDETHHGMHLGVWYWRP--TVWWDPAAGVS 351
Query: 353 ------------GFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCN 385
G+ G W+ + + + NG P +T P CN
Sbjct: 352 PEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICN 398
>pdb|4EOG|A Chain A, Crystal Structure Of Csx1 Of Pyrococcus Furiosus
Length = 480
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 360 WNSVLEAVSNGLPMVTWPFF-----ADQFCNEKLVVQVLRIGVTIG 400
WN+ + +V+NG P+V F+ + + N+KL + +G+ +G
Sbjct: 242 WNAFISSVANGFPLVFASFYPNIRDVEDYLNKKL--EEFLVGIEVG 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,212,293
Number of Sequences: 62578
Number of extensions: 528991
Number of successful extensions: 1097
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 30
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)